Query 042428
Match_columns 106
No_of_seqs 98 out of 100
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 10:13:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jo0_A Hypothetical protein HI 99.8 1.3E-21 4.5E-26 135.1 6.9 71 1-72 14-88 (98)
2 1rq8_A Conserved hypothetical 99.8 3.3E-21 1.1E-25 134.8 7.7 72 1-72 13-88 (104)
3 2d0o_B DIOL dehydratase-reacti 62.4 14 0.00049 25.8 5.0 66 12-82 17-87 (125)
4 3ka5_A Ribosome-associated pro 59.5 21 0.00072 22.4 4.9 29 32-61 1-29 (65)
5 1nbw_B Glycerol dehydratase re 53.6 26 0.00089 24.2 5.0 63 15-82 20-89 (117)
6 3toe_A MTH10B, DNA/RNA-binding 37.8 83 0.0028 20.8 5.4 56 6-61 4-59 (91)
7 3k2t_A LMO2511 protein; lister 35.0 33 0.0011 20.8 2.8 29 32-61 1-29 (57)
8 3lyv_A Ribosome-associated fac 34.5 27 0.00091 22.0 2.4 29 32-61 2-30 (66)
9 1nh9_A MJA10B, DNA-binding pro 32.4 98 0.0034 19.9 5.0 56 5-61 1-56 (87)
10 2bky_A DNA/RNA-binding protein 30.9 1.1E+02 0.0037 20.1 5.1 54 6-59 9-62 (97)
11 1nfj_A ALBA, conserved hypothe 30.1 1.1E+02 0.0038 19.7 5.0 55 7-61 4-58 (89)
12 2id1_A Hypothetical protein; a 28.8 44 0.0015 23.3 3.0 22 36-57 38-59 (130)
13 2ksn_A Ubiquitin domain-contai 27.2 47 0.0016 23.9 2.9 51 48-100 75-129 (137)
14 2h9u_A DNA/RNA-binding protein 26.4 1.4E+02 0.0049 19.7 5.4 54 6-59 6-61 (102)
15 2o5a_A BH1328 protein; BHR21, 26.2 42 0.0014 23.2 2.5 22 36-57 38-59 (125)
16 1eex_B Propanediol dehydratase 25.6 1.2E+02 0.0042 23.2 5.2 65 15-84 86-157 (224)
17 3g5b_A Netrin receptor UNC5B; 25.4 57 0.002 26.7 3.5 37 34-71 172-209 (405)
18 3ups_A Iojap-like protein; PSI 22.7 66 0.0023 22.6 3.0 23 35-57 53-75 (136)
19 1t3q_C Quinoline 2-oxidoreduct 20.3 12 0.0004 28.6 -1.5 58 43-100 11-71 (288)
No 1
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.85 E-value=1.3e-21 Score=135.14 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=65.3
Q ss_pred CCccCCCccccCCCccchhHHHHHHHhhhhcceeEEEecCCChhhHHHHHHHHHHHcCCCC----CccEEEEecCC
Q 042428 1 MAQKRSSCLPSGRRRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQINEFAEEIARLSVPPP----GVDVWLPSDSL 72 (106)
Q Consensus 1 ~g~kmk~~L~IGKrGVf~gVIeniH~hWK~rElVKI~~~~~~~~~~~e~ae~Le~~sGGiv----gg~~ii~yRgk 72 (106)
+|+.++|.++|||.|||++|+++|+.+|++||||||+|.+++..+++++|++|+++|||++ |..++| ||+.
T Consensus 14 ~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~~vL-yR~~ 88 (98)
T 1jo0_A 14 LAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVL-YRPS 88 (98)
T ss_dssp HHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTEEEE-ECCC
T ss_pred HhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEE-EccC
Confidence 4788999999999999999999999999999999999999999999999999999999999 666655 5543
No 2
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.84 E-value=3.3e-21 Score=134.78 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=66.3
Q ss_pred CCccCCCccccCCCccchhHHHHHHHhhhhcceeEEEecCCChhhHHHHHHHHHHHcCCCC----CccEEEEecCC
Q 042428 1 MAQKRSSCLPSGRRRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQINEFAEEIARLSVPPP----GVDVWLPSDSL 72 (106)
Q Consensus 1 ~g~kmk~~L~IGKrGVf~gVIeniH~hWK~rElVKI~~~~~~~~~~~e~ae~Le~~sGGiv----gg~~ii~yRgk 72 (106)
+|+.++|.++|||.|||++|+++|+.+|++||||||+|.+++..+++++|++|+++|||++ |..++||++++
T Consensus 13 ~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~~VLYR~~~ 88 (104)
T 1rq8_A 13 LAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSMIVIYRESK 88 (104)
T ss_dssp HTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTEEEEEECCC
T ss_pred HhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEEEeCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999 77666655443
No 3
>2d0o_B DIOL dehydratase-reactivating factor small subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.51.3.2 PDB: 2d0p_B
Probab=62.41 E-value=14 Score=25.84 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=51.5
Q ss_pred CCCccchhHHHHHHHhhhhcceeEEEecCCChhhHHHHHHHHHHHcCCCC-----CccEEEEecCCCCCCCccccc
Q 042428 12 GRRRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQINEFAEEIARLSVPPP-----GVDVWLPSDSLGTAFPQVDIE 82 (106)
Q Consensus 12 GKrGVf~gVIeniH~hWK~rElVKI~~~~~~~~~~~e~ae~Le~~sGGiv-----gg~~ii~yRgknY~~P~~~~~ 82 (106)
+-..++..|+..|+ -|=|..++......++...|.+.++.|+=-| .++++|-||...-..|.+++.
T Consensus 17 ~~~~~l~evl~GIE-----EEGip~~v~~~~~~d~~~lA~~AA~~S~LgVGIGi~~~~~vih~k~L~~~~pL~~~~ 87 (125)
T 2d0o_B 17 GCDGLWREVLLGIE-----EEGIPFRLQHHPAGEVVDSAWQAARSSPLLVGIACDRHMLVVHYKNLPASAPLFTLM 87 (125)
T ss_dssp TCGGGGHHHHHHHH-----HTTCCEEEEEESSCCHHHHHHHHHHTCTTSEEEEECSSEEEEEETTSCTTCCSEEEE
T ss_pred CcHHHHHHHHhhhc-----ccCCCeEEEecCCCCHHHHHHHHHHhCCCceeEEECCCcEEEEcCCCCCCCChhhCC
Confidence 44567888888888 4555555554555799999999999999887 678999999998888888743
No 4
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=59.51 E-value=21 Score=22.44 Aligned_cols=29 Identities=31% Similarity=0.083 Sum_probs=23.5
Q ss_pred ceeEEEecCCChhhHHHHHHHHHHHcCCCC
Q 042428 32 EIVKVFCKPSKPGQINEFAEEIARLSVPPP 61 (106)
Q Consensus 32 ElVKI~~~~~~~~~~~e~ae~Le~~sGGiv 61 (106)
|+|+.+--.-.+..+.++..+++-. |-.+
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~-gh~F 29 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELL-GHNF 29 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHH-TCSE
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhC-CCcE
Confidence 5778888888899999999999865 5555
No 5
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=53.63 E-value=26 Score=24.21 Aligned_cols=63 Identities=13% Similarity=0.038 Sum_probs=48.2
Q ss_pred ccchhHHHHHHHhhhhcceeEEEecCCCh-hhHHHHHHHHHHHcCCCC------CccEEEEecCCCCCCCccccc
Q 042428 15 RVFGGVILNMHMHWKKHEIVKVFCKPSKP-GQINEFAEEIARLSVPPP------GVDVWLPSDSLGTAFPQVDIE 82 (106)
Q Consensus 15 GVf~gVIeniH~hWK~rElVKI~~~~~~~-~~~~e~ae~Le~~sGGiv------gg~~ii~yRgknY~~P~~~~~ 82 (106)
.++..|+..|+ -|=|..++..... .++...|.+.++.|+=-| .|+++|-||...-..|.|...
T Consensus 20 ~~l~~vl~GIE-----EEGip~~v~~~~~~~d~~~lA~~AA~~S~lgVGIGi~~~G~~vih~~~L~~~~pLf~~~ 89 (117)
T 1nbw_B 20 GAINELCWGLE-----EQGVPCQTITYDGGGDAAALGALAARSSPLRVGIGLSASGEIALTHAQLPADAPLATGH 89 (117)
T ss_dssp HHHHHHHHHHH-----HTTCCEEEEECTTCCCHHHHHHHHHHHCTTSEEEEECTTSEEEEEETTSCTTCCSEEEE
T ss_pred HHHHHHHhhhh-----hcCCCeEEEEeCCCCCHHHHHHHHHHhCCCceEEEECCCCCEEEEcCCCCCCCCcccCC
Confidence 35667777777 5666666655554 799999999999999888 457899999988888876543
No 6
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=37.81 E-value=83 Score=20.79 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=48.2
Q ss_pred CCccccCCCccchhHHHHHHHhhhhcceeEEEecCCChhhHHHHHHHHHHHcCCCC
Q 042428 6 SSCLPSGRRRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQINEFAEEIARLSVPPP 61 (106)
Q Consensus 6 k~~L~IGKrGVf~gVIeniH~hWK~rElVKI~~~~~~~~~~~e~ae~Le~~sGGiv 61 (106)
...+.+|+..+..=|..-+++-=+...-|.|+..+..-..+-.+|+.+.++....+
T Consensus 4 ~~vv~vg~Kpv~~YV~~~i~~~n~g~~eV~ikA~G~aIskAVdvaei~k~R~~~~v 59 (91)
T 3toe_A 4 ENVVYIGNKPVMNYVLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFIPDI 59 (91)
T ss_dssp -CCEECCSSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTCTTC
T ss_pred cCEEEECCCcHHHHHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHhccCCc
Confidence 46789999999999999998744668889999999999999999999998876555
No 7
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=34.98 E-value=33 Score=20.83 Aligned_cols=29 Identities=24% Similarity=0.080 Sum_probs=18.5
Q ss_pred ceeEEEecCCChhhHHHHHHHHHHHcCCCC
Q 042428 32 EIVKVFCKPSKPGQINEFAEEIARLSVPPP 61 (106)
Q Consensus 32 ElVKI~~~~~~~~~~~e~ae~Le~~sGGiv 61 (106)
++|+.+--.-.+..+.++..+++-. |-.+
T Consensus 1 ~ivr~K~~~~kpmsveEAv~qmel~-gh~F 29 (57)
T 3k2t_A 1 EIVRTKQFSLKPMDSEEAVLQMNLL-GHSF 29 (57)
T ss_dssp CCCCCCC---CCBCHHHHHHHHHHH-TCSE
T ss_pred CeEEEEeccCCCCCHHHHHHHHHhC-CCcE
Confidence 3455555566788999999998765 5555
No 8
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=34.45 E-value=27 Score=21.98 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=21.3
Q ss_pred ceeEEEecCCChhhHHHHHHHHHHHcCCCC
Q 042428 32 EIVKVFCKPSKPGQINEFAEEIARLSVPPP 61 (106)
Q Consensus 32 ElVKI~~~~~~~~~~~e~ae~Le~~sGGiv 61 (106)
++|+.+.-.-.+..+.++..+++-. |-.+
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~-gh~F 30 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELL-GHDF 30 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTT-TCSE
T ss_pred eEEEEEEccCCCCCHHHHHHHHHcC-CCcE
Confidence 4566666677889999999998754 5555
No 9
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=32.42 E-value=98 Score=19.88 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=45.6
Q ss_pred CCCccccCCCccchhHHHHHHHhhhhcceeEEEecCCChhhHHHHHHHHHHHcCCCC
Q 042428 5 RSSCLPSGRRRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQINEFAEEIARLSVPPP 61 (106)
Q Consensus 5 mk~~L~IGKrGVf~gVIeniH~hWK~rElVKI~~~~~~~~~~~e~ae~Le~~sGGiv 61 (106)
|++.+.||+..++.=|..-+.+-=+. .-|.|+..+..-..+-.+|+.|.++.++-+
T Consensus 1 ~~n~I~V~~k~v~~YV~~~~~~l~~g-~eV~ikA~G~AIskAV~vaeilk~r~~~~l 56 (87)
T 1nh9_A 1 MDNVVLIGKKPVMNYVVAVLTQLTSN-DEVIIKARGKAINKAVDVAEMIRNRFIKDI 56 (87)
T ss_dssp CCSEEEECSSCHHHHHHHHHHHHHHC-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTC
T ss_pred CCCEEEEeCcchHHHHHHHHHHhcCC-CEEEEEEechHHHHHHHHHHHHHHhccCCe
Confidence 56778899998888777766654455 888999999999999999999999985545
No 10
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=30.92 E-value=1.1e+02 Score=20.13 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=44.2
Q ss_pred CCccccCCCccchhHHHHHHHhhhhcceeEEEecCCChhhHHHHHHHHHHHcCC
Q 042428 6 SSCLPSGRRRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQINEFAEEIARLSVP 59 (106)
Q Consensus 6 k~~L~IGKrGVf~gVIeniH~hWK~rElVKI~~~~~~~~~~~e~ae~Le~~sGG 59 (106)
++.+.||+.|++.=|..-+.+-=+...-|.|+..+..-..+-.+|+.|.++..|
T Consensus 9 ~n~I~V~~k~v~~YV~~a~~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~ 62 (97)
T 2bky_A 9 SNVVLIGKKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLP 62 (97)
T ss_dssp CCEEECCSSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTST
T ss_pred CCEEEEcCcCHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccC
Confidence 467899999987666666654335578899999999999999999999999855
No 11
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=30.11 E-value=1.1e+02 Score=19.70 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=44.6
Q ss_pred CccccCCCccchhHHHHHHHhhhhcceeEEEecCCChhhHHHHHHHHHHHcCCCC
Q 042428 7 SCLPSGRRRVFGGVILNMHMHWKKHEIVKVFCKPSKPGQINEFAEEIARLSVPPP 61 (106)
Q Consensus 7 ~~L~IGKrGVf~gVIeniH~hWK~rElVKI~~~~~~~~~~~e~ae~Le~~sGGiv 61 (106)
+-+.||+.|++.=|..-+.+-=+...-|.|+..+..-..+-.+|+.|.++.+.-+
T Consensus 4 n~I~V~~k~v~~yV~~~~~~l~~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl 58 (89)
T 1nfj_A 4 HVVYVGNKPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGV 58 (89)
T ss_dssp EEEECCSSCHHHHHHHHHHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTC
T ss_pred CEEEEcCCCHHHHHHHHHHHHhCCCCEEEEEEecHHHHHHHHHHHHHHHhccCCc
Confidence 5678999998877777776533557889999999999999999999999984325
No 12
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=28.85 E-value=44 Score=23.33 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=19.8
Q ss_pred EEecCCChhhHHHHHHHHHHHc
Q 042428 36 VFCKPSKPGQINEFAEEIARLS 57 (106)
Q Consensus 36 I~~~~~~~~~~~e~ae~Le~~s 57 (106)
|+|..++..+++.+|+.++.+.
T Consensus 38 VIaTg~S~rqv~Aiad~v~~~l 59 (130)
T 2id1_A 38 IVATGDSNRQVKALANSVQVKL 59 (130)
T ss_dssp EEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHHH
Confidence 7899999999999999998764
No 13
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=27.19 E-value=47 Score=23.86 Aligned_cols=51 Identities=14% Similarity=0.012 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCC-CccEEEEe--cCCCCCCCccccccC-CCCCCCCCCCCCccce
Q 042428 48 EFAEEIARLSVPPP-GVDVWLPS--DSLGTAFPQVDIEDA-GLSTSESDHEDDSLSI 100 (106)
Q Consensus 48 e~ae~Le~~sGGiv-gg~~ii~y--RgknY~~P~~~~~~~-~~~~~~~~~~~~~~~~ 100 (106)
++|+.+-...|=+| .++....| +|..|+-|.+.++++ ||. +.+.++++..|
T Consensus 75 ~tAQ~IldaAgItvp~gdL~~cYDe~G~~Y~LP~yvls~P~Nl~--~~~~~~~~~~~ 129 (137)
T 2ksn_A 75 ELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMI--EEKSDIETLDI 129 (137)
T ss_dssp HHHHHHHHHHSCBCSSCCSSEEEETTTEEEECCGGGTCCSTTTC--CCTTTCSCCCC
T ss_pred HHHHHHHHHcCCcccCCcHHHHHhccCCccCCCeeEeeCCcccc--ccccccchhhH
Confidence 67777777788777 55555577 566899998888875 343 33444555444
No 14
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=26.42 E-value=1.4e+02 Score=19.73 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=45.4
Q ss_pred CCccccCCCccchhHHHHHHHhh-hhcceeEEEecCCChhhHHHHHHHHHHHc-CC
Q 042428 6 SSCLPSGRRRVFGGVILNMHMHW-KKHEIVKVFCKPSKPGQINEFAEEIARLS-VP 59 (106)
Q Consensus 6 k~~L~IGKrGVf~gVIeniH~hW-K~rElVKI~~~~~~~~~~~e~ae~Le~~s-GG 59 (106)
.+.+-||+.|++.-|..-++... +...-|.|+..+..-..+-.+|+.|.++. +|
T Consensus 6 ~n~I~V~~k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~g 61 (102)
T 2h9u_A 6 APEVRIGRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKN 61 (102)
T ss_dssp CCEEECCSSCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTT
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCC
Confidence 47789999999988888883334 44778899999999999999999999999 45
No 15
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=26.20 E-value=42 Score=23.20 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=19.4
Q ss_pred EEecCCChhhHHHHHHHHHHHc
Q 042428 36 VFCKPSKPGQINEFAEEIARLS 57 (106)
Q Consensus 36 I~~~~~~~~~~~e~ae~Le~~s 57 (106)
|+|.+++..+++.+|+.++.+.
T Consensus 38 VIatg~S~rqv~Aiad~v~~~l 59 (125)
T 2o5a_A 38 LICHGNSEKQVQAIAHELKKVA 59 (125)
T ss_dssp EEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHHH
Confidence 7899999999999999988653
No 16
>1eex_B Propanediol dehydratase; coenzyme B12, potassium ION, TIM barrel, lyase; HET: COY; 1.70A {Klebsiella oxytoca} SCOP: c.51.3.1 PDB: 1dio_B* 1egm_B* 1egv_B* 1iwb_B* 1uc4_B* 1uc5_B* 3auj_B*
Probab=25.61 E-value=1.2e+02 Score=23.24 Aligned_cols=65 Identities=18% Similarity=0.036 Sum_probs=47.8
Q ss_pred ccchhHHHHHHHhhhhcceeEEEecC-CChhhHHHHHHHHHHHcCCCC------CccEEEEecCCCCCCCccccccC
Q 042428 15 RVFGGVILNMHMHWKKHEIVKVFCKP-SKPGQINEFAEEIARLSVPPP------GVDVWLPSDSLGTAFPQVDIEDA 84 (106)
Q Consensus 15 GVf~gVIeniH~hWK~rElVKI~~~~-~~~~~~~e~ae~Le~~sGGiv------gg~~ii~yRgknY~~P~~~~~~~ 84 (106)
.++..|+..|+ -|=|..++.+ ....++...|.+.++.|+=-| .+.++|-||.....+|-++..++
T Consensus 86 ~vlreVlaGIE-----EEGIP~rvi~v~~~~Dv~~lA~~AA~~S~LgVGIGI~s~g~~VIH~r~Lpp~~~Lelf~~a 157 (224)
T 1eex_B 86 SILREVIAGIE-----EEGIKARVIRCFKSSDVAFVAVEGNRLSGSGISIGIQSKGTTVIHQQGLPPLSNLELFPQA 157 (224)
T ss_dssp HHHHHHHHHHH-----HTTCEEEEEECCSCCSHHHHHHHHHHHCTTSEEEEECTTCCEEEEETTSCTTCCSEEECCG
T ss_pred HHHHHHHhhhc-----ccCCCeEEEEecCCCCHHHHHHHHHHhCCCceEEEECCCCcEEEEcCCCCCCCcccccccC
Confidence 45667777887 5666666433 445799999999999999877 55789999988887776665433
No 17
>3g5b_A Netrin receptor UNC5B; ZU5, death domain, UPA, apoptosis, developmental protein, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; 2.00A {Rattus norvegicus}
Probab=25.41 E-value=57 Score=26.71 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=27.5
Q ss_pred eEEEecCCChhhHHHHHHHHHHHcCCCC-CccEEEEecC
Q 042428 34 VKVFCKPSKPGQINEFAEEIARLSVPPP-GVDVWLPSDS 71 (106)
Q Consensus 34 VKI~~~~~~~~~~~e~ae~Le~~sGGiv-gg~~ii~yRg 71 (106)
++|.|.+..+...+++.+ .|++.||.+ +-...+.+++
T Consensus 172 lRVY~l~dt~~Al~~v~~-~E~~~GG~ll~~~k~l~f~~ 209 (405)
T 3g5b_A 172 LRVYCLEDTPAALKEVLE-LERTLGGYLVEEPKPLLFKD 209 (405)
T ss_dssp EEEEEEESSHHHHHHHHH-HHHHHTEEECSCCEEEEEES
T ss_pred EEEEEeCCChHHHHHHHH-HHHhhCCEECCCCccccccC
Confidence 889999998877777555 499999999 5544555553
No 18
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=22.72 E-value=66 Score=22.56 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=19.9
Q ss_pred EEEecCCChhhHHHHHHHHHHHc
Q 042428 35 KVFCKPSKPGQINEFAEEIARLS 57 (106)
Q Consensus 35 KI~~~~~~~~~~~e~ae~Le~~s 57 (106)
=|+|.+++..+++.+|+.++...
T Consensus 53 fVIatg~S~rqv~Aiad~v~~~l 75 (136)
T 3ups_A 53 MVIASGRSSRQVTAMAQKLADRI 75 (136)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHHH
Confidence 37899999999999999998664
No 19
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3
Probab=20.28 E-value=12 Score=28.64 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHHcCCCC--CccEEEEecCCCCCCCccccccCCCC-CCCCCCCCCccce
Q 042428 43 PGQINEFAEEIARLSVPPP--GVDVWLPSDSLGTAFPQVDIEDAGLS-TSESDHEDDSLSI 100 (106)
Q Consensus 43 ~~~~~e~ae~Le~~sGGiv--gg~~ii~yRgknY~~P~~~~~~~~~~-~~~~~~~~~~~~~ 100 (106)
+..+.+..+.|++.-++.+ ||+-++.+....-.+|..+|.=++++ +..-..+++.+.|
T Consensus 11 P~sl~ea~~ll~~~~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~I 71 (288)
T 1t3q_C 11 PASLQEVIQVLADDPDARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSAGILSV 71 (288)
T ss_dssp CSSHHHHHHHHHHCTTCEEESSCTTHHHHHHTTCCCCSEEEECTTCGGGGCEEEETTEEEE
T ss_pred CCCHHHHHHHHhhCCCCEEEeCchhHHHHHhcCCCCCCEEEECCCChhhcCeEEcCCEEEE
Confidence 4566777777776334454 78777777666667898999888887 6665566777665
Done!