Query 042429
Match_columns 304
No_of_seqs 113 out of 142
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:14:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wcn_A Transcription elongatio 93.3 0.017 5.8E-07 43.4 0.3 61 195-262 5-66 (70)
2 2kz3_A Putative uncharacterize 90.4 0.26 9E-06 38.2 4.0 39 212-255 17-55 (83)
3 2i1q_A DNA repair and recombin 79.7 0.49 1.7E-05 42.9 0.9 59 197-262 3-61 (322)
4 3lda_A DNA repair protein RAD5 75.6 1.4 4.9E-05 42.3 2.9 61 197-262 81-141 (400)
5 2z43_A DNA repair and recombin 72.6 0.74 2.5E-05 42.1 0.0 57 198-261 13-69 (324)
6 3pzp_A DNA polymerase kappa; D 72.4 1.8 6E-05 43.2 2.6 52 198-259 339-390 (517)
7 3osn_A DNA polymerase IOTA; ho 72.0 1.8 6.2E-05 41.8 2.6 51 199-258 236-286 (420)
8 1b22_A DNA repair protein RAD5 70.9 0.93 3.2E-05 36.9 0.2 61 198-263 24-84 (114)
9 1pzn_A RAD51, DNA repair and r 70.8 2.2 7.6E-05 39.8 2.8 58 198-262 36-93 (349)
10 4dez_A POL IV 1, DNA polymeras 70.2 0.88 3E-05 42.5 -0.1 40 199-243 180-219 (356)
11 1v5w_A DMC1, meiotic recombina 66.8 1.3 4.4E-05 41.1 0.3 75 178-260 9-83 (343)
12 1t94_A Polymerase (DNA directe 66.5 2.8 9.4E-05 40.7 2.6 50 199-258 284-333 (459)
13 2aq4_A DNA repair protein REV1 66.2 2.9 0.0001 40.3 2.7 48 199-250 243-292 (434)
14 4f4y_A POL IV, DNA polymerase 64.4 2.6 9E-05 39.7 1.9 51 199-258 181-231 (362)
15 1jx4_A DNA polymerase IV (fami 62.9 2.5 8.5E-05 39.4 1.4 54 199-261 180-233 (352)
16 3bq0_A POL IV, DBH, DNA polyme 62.1 2.8 9.5E-05 39.1 1.6 55 199-262 181-235 (354)
17 1z3e_B DNA-directed RNA polyme 55.4 8.4 0.00029 28.9 3.0 36 213-253 22-57 (73)
18 3gqc_A DNA repair protein REV1 53.6 5.2 0.00018 39.9 2.0 40 199-243 317-356 (504)
19 3im1_A Protein SNU246, PRE-mRN 53.0 7.8 0.00027 35.7 3.0 54 198-258 158-211 (328)
20 3k4g_A DNA-directed RNA polyme 51.7 11 0.00039 29.2 3.3 38 213-255 25-62 (86)
21 2q0z_X Protein Pro2281; SEC63, 43.1 17 0.00059 33.6 3.6 55 198-259 162-216 (339)
22 3gfk_B DNA-directed RNA polyme 41.2 11 0.00037 28.9 1.6 37 213-254 29-65 (79)
23 4ecq_A DNA polymerase ETA; tra 35.5 12 0.00041 36.1 1.3 54 199-261 255-309 (435)
24 1coo_A RNA polymerase alpha su 35.0 21 0.00072 28.4 2.4 18 212-229 36-53 (98)
25 2f8v_T Telethonin; sarcomere, 31.4 11 0.00037 32.7 0.2 38 18-55 61-102 (167)
26 3mab_A Uncharacterized protein 30.1 11 0.00039 29.5 0.1 26 202-229 9-34 (93)
27 1u9l_A Transcription elongatio 28.3 30 0.001 25.6 2.1 50 208-262 15-64 (70)
28 3bqs_A Uncharacterized protein 26.7 14 0.00049 28.8 0.1 26 202-229 9-34 (93)
29 3euh_C MUKE, chromosome partit 25.1 76 0.0026 28.9 4.6 49 213-261 107-159 (234)
30 2va8_A SSO2462, SKI2-type heli 23.0 38 0.0013 33.8 2.4 40 211-258 669-708 (715)
31 3go5_A Multidomain protein wit 21.3 1.2E+02 0.0042 27.7 5.3 74 182-260 182-272 (285)
No 1
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=93.30 E-value=0.017 Score=43.36 Aligned_cols=61 Identities=30% Similarity=0.416 Sum_probs=50.2
Q ss_pred CCCceeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhcc-ccC
Q 042429 195 LEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHART-CIM 262 (304)
Q Consensus 195 L~DeVwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAkt-Cvl 262 (304)
+.|++-.|++|+..-+ ++|.++||+||+|+..+ +++.|-.|. |+|...=+.++.-|+. |-+
T Consensus 5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~~---~~~eL~~i~--gise~kA~~ii~aAr~~~w~ 66 (70)
T 1wcn_A 5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAEQ---GIDDLADIE--GLTDEKAGALIMAARNICWF 66 (70)
T ss_dssp CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHTS---CHHHHHTSS--SCCHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHcC---CHHHHHHcc--CCCHHHHHHHHHHHHHccCc
Confidence 4567778887776544 89999999999998654 788899886 7899999999999998 654
No 2
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=90.40 E-value=0.26 Score=38.21 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=29.9
Q ss_pred hchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHH
Q 042429 212 YKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIK 255 (304)
Q Consensus 212 hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~ 255 (304)
-++|.+++|.||+||+. .|+.+|.+++| +|-+.=-.+..
T Consensus 17 ~~~L~~~~I~Tv~Dfl~---~d~~eL~~~~~--ls~~~v~~l~r 55 (83)
T 2kz3_A 17 IQLLRSHRIKTVVDLVS---ADLEEVAQKCG--LSYKALVALRR 55 (83)
T ss_dssp HHHHHHTTCCCHHHHTT---SCHHHHHHHHT--CCHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHh---CCHHHHHHHhC--CCHHHHHHHHH
Confidence 47899999999999975 69999999984 56554444443
No 3
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=79.70 E-value=0.49 Score=42.88 Aligned_cols=59 Identities=25% Similarity=0.242 Sum_probs=43.4
Q ss_pred CceeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhccccC
Q 042429 197 DEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIM 262 (304)
Q Consensus 197 DeVwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAktCvl 262 (304)
+++..|++|+. .+-++|+++||+||+|++.+ ++..|-++. |+|.+.=+.+++.|+.+..
T Consensus 3 ~~~~~l~gi~~--~~~~kL~~~gi~t~~~~~~~---~~~~L~~~~--gis~~~a~~~i~~a~~~~~ 61 (322)
T 2i1q_A 3 DNLTDLPGVGP--STAEKLVEAGYIDFMKIATA---TVGELTDIE--GISEKAAAKMIMGARDLCD 61 (322)
T ss_dssp --CTTSTTCCH--HHHHHHHHHTCCSHHHHHTC---CHHHHHTST--TCCHHHHHHHHHHHHHHTT
T ss_pred ccHhhcCCCCH--HHHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CcCHHHHHHHHHHHHHhhh
Confidence 45666775554 45699999999999999854 577777775 6788877788888877654
No 4
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=75.62 E-value=1.4 Score=42.31 Aligned_cols=61 Identities=23% Similarity=0.219 Sum_probs=49.2
Q ss_pred CceeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhccccC
Q 042429 197 DEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIM 262 (304)
Q Consensus 197 DeVwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAktCvl 262 (304)
.++-+|+..|-.-..-++|.++||.||++|+. .++..|.++. |+|...=+.+++.|++++.
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~---~~~~~L~~~~--gis~~~~~~i~~~a~~~~~ 141 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAY---APRKDLLEIK--GISEAKADKLLNEAARLVP 141 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHH---SCHHHHHTST--TCCHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHHh--CCCHHHHHHHHHHHHHhcc
Confidence 46778888555555669999999999999985 5788999986 6888888888888887664
No 5
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=72.57 E-value=0.74 Score=42.14 Aligned_cols=57 Identities=23% Similarity=0.342 Sum_probs=0.0
Q ss_pred ceeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhcccc
Q 042429 198 EVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCI 261 (304)
Q Consensus 198 eVwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAktCv 261 (304)
++.+|.+|+.. .-++|.++||+||++|+.. ++..|.++. |+|...=+.+++.|+.+.
T Consensus 13 ~~~~l~g~~~~--~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--g~s~~~~~~~~~~~~~~~ 69 (324)
T 2z43_A 13 TINDLPGISQT--VINKLIEAGYSSLETLAVA---SPQDLSVAA--GIPLSTAQKIIKEARDAL 69 (324)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHcCCCCHH--HHHHHHHcCCCcHHHHHcC---CHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 68888877654 4489999999999999854 455566664 456666666666666654
No 6
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=72.37 E-value=1.8 Score=43.20 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=39.8
Q ss_pred ceeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhcc
Q 042429 198 EVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHART 259 (304)
Q Consensus 198 eVwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAkt 259 (304)
+|-+|-+||+.+. ++|...||.|++|+.++ +..|++.|| ...|....++|.-
T Consensus 339 PV~kl~GIG~~t~--~~L~~lGI~TigDL~~~----~~~L~~~fG----~~~~~~l~~~a~G 390 (517)
T 3pzp_A 339 PIRKVSGIGKVTE--KMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISLG 390 (517)
T ss_dssp BGGGSTTCCHHHH--HHHHHTTCCBHHHHHHH----HHHHHHHSC----HHHHHHHHHHHTT
T ss_pred ChhhhccccHHHH--HHHHHhCCCcHHHHHhh----HHHHHHHhC----hHHHHHHHHHHcC
Confidence 3556668887554 89999999999999986 457888886 5678877777663
No 7
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=71.97 E-value=1.8 Score=41.85 Aligned_cols=51 Identities=27% Similarity=0.320 Sum_probs=37.8
Q ss_pred eeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhc
Q 042429 199 VWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHAR 258 (304)
Q Consensus 199 VwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAk 258 (304)
|-+|-+||+. .-++|...||.|++|+.+ .+++.|++.|| .+....+.+||.
T Consensus 236 v~~l~GIG~~--t~~~L~~lGI~TigdLa~---~~~~~L~~~fG----~~~g~~L~~~a~ 286 (420)
T 3osn_A 236 IKEIPGIGYK--TAKCLEALGINSVRDLQT---FSPKILEKELG----ISVAQRIQKLSF 286 (420)
T ss_dssp GGGSTTCCHH--HHHHHHHTTCCSHHHHHH---SCHHHHHHHHH----HHHHHHHHHHHT
T ss_pred HHHccCCCHH--HHHHHHHhCCCcHHHHhh---CCHHHHHHHhC----chHHHHHHHHhc
Confidence 4444456653 558999999999999876 47899999998 345566667775
No 8
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=70.87 E-value=0.93 Score=36.93 Aligned_cols=61 Identities=26% Similarity=0.313 Sum_probs=49.3
Q ss_pred ceeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhccccCC
Q 042429 198 EVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIMG 263 (304)
Q Consensus 198 eVwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAktCvl~ 263 (304)
+|.+|+..|-.-..-++|.++|++||++. ...++..|.++- |+|...=+.+++=|+.++..
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~v---a~a~~~eL~~i~--GIse~ka~kIi~aA~kl~~~ 84 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAV---AYAPKKELINIK--GISEAKADKILAEAAKLVPM 84 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGB---TSSBHHHHHTTT--TCSTTHHHHHHHHHHHHSCC
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHH---HhCCHHHHHHcc--CCCHHHHHHHHHHHHHHccc
Confidence 68888855444456699999999999976 455888999985 78999999999999987753
No 9
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=70.82 E-value=2.2 Score=39.76 Aligned_cols=58 Identities=24% Similarity=0.329 Sum_probs=44.9
Q ss_pred ceeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhccccC
Q 042429 198 EVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIM 262 (304)
Q Consensus 198 eVwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAktCvl 262 (304)
++.+|.+|+. ...++|.++||+||++++. .++..|.++. |+|...=+.+++.|.++..
T Consensus 36 ~l~~l~Gi~~--~~~~kL~~ag~~t~~~~~~---~~~~~L~~~~--~~s~~~~~~~l~~~~~~~~ 93 (349)
T 1pzn_A 36 SIEDLPGVGP--ATAEKLREAGYDTLEAIAV---ASPIELKEVA--GISEGTALKIIQAARKAAN 93 (349)
T ss_dssp CSSCCTTCCH--HHHHHHHTTTCCSHHHHHT---CCHHHHHHHH--CCCHHHHHHHHHHHHHHCS
T ss_pred cHHHcCCCCH--HHHHHHHHcCCCcHHHHHh---CCHHHHHhhc--CCCHHHHHHHHHHHhhhcc
Confidence 4666665554 5679999999999999875 4788888887 5687777888888887654
No 10
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=70.23 E-value=0.88 Score=42.51 Aligned_cols=40 Identities=35% Similarity=0.413 Sum_probs=31.5
Q ss_pred eeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcC
Q 042429 199 VWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGT 243 (304)
Q Consensus 199 VwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~ 243 (304)
|..|-+||+.- -++|...||+|++|+.+ .+++.|++.||.
T Consensus 180 v~~l~GiG~~~--~~~L~~~GI~Ti~dL~~---~~~~~L~~~fG~ 219 (356)
T 4dez_A 180 PDALWGVGPKT--TKKLAAMGITTVADLAV---TDPSVLTTAFGP 219 (356)
T ss_dssp GGGSTTCCHHH--HHHHHHTTCCSHHHHHT---SCHHHHHHHHCH
T ss_pred HHHHcCCchhH--HHHHHHcCCCeeccccc---CCHHHHHHHhCC
Confidence 44555777654 48899999999999864 588999999974
No 11
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=66.79 E-value=1.3 Score=41.07 Aligned_cols=75 Identities=23% Similarity=0.204 Sum_probs=0.0
Q ss_pred EEeecCCcccccCCCCCCCCceeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhh
Q 042429 178 VVKDHRGELYKKHHPQMLEDEVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHA 257 (304)
Q Consensus 178 vVkd~Rge~~kKh~pP~L~DeVwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HA 257 (304)
+|.+.++..-.... | -.++++|+.-|-.=..-++|.++||+||++|+.. ++..|.++. |+|...=+.+++.|
T Consensus 9 ~~~~~~~~~~~~~~-~--~~~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--~is~~~~~~~~~~a 80 (343)
T 1v5w_A 9 VVAEEPGFQDEEES-L--FQDIDLLQKHGINVADIKKLKSVGICTIKGIQMT---TRRALCNVK--GLSEAKVDKIKEAA 80 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcccchhhhccccc-c--cCcHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CCCHHHHHHHHHHH
Confidence 34444444433333 2 2368899844444455589999999999999854 455555554 44555555555555
Q ss_pred ccc
Q 042429 258 RTC 260 (304)
Q Consensus 258 ktC 260 (304)
..+
T Consensus 81 ~~~ 83 (343)
T 1v5w_A 81 NKL 83 (343)
T ss_dssp ---
T ss_pred Hhh
Confidence 544
No 12
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=66.49 E-value=2.8 Score=40.75 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=38.1
Q ss_pred eeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhc
Q 042429 199 VWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHAR 258 (304)
Q Consensus 199 VwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAk 258 (304)
|-+|-+||+.+ .++|...||+|++|+.++ +..|++.|| .+.|.....+|+
T Consensus 284 v~~l~GiG~~~--~~~L~~lGI~T~gdL~~~----~~~L~~~fG----~~~~~~l~~~a~ 333 (459)
T 1t94_A 284 IRKVSGIGKVT--EKMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISL 333 (459)
T ss_dssp GGGCTTSCHHH--HHHHHHTTCCBHHHHHHT----HHHHHHHSC----HHHHHHHHHHHT
T ss_pred HHhcCCcCHHH--HHHHHHcCCCcHHHHHhh----HHHHHHHhC----hHhHHHHHHHHc
Confidence 66677787654 489999999999999874 357999987 455666667776
No 13
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=66.20 E-value=2.9 Score=40.30 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=35.4
Q ss_pred eeeeeeecccchhhchhhh--cCCccHHHHHHhhcCChHHHHHHHcCCCChhhH
Q 042429 199 VWRLEKIGRSGTFYKKLTA--SGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMW 250 (304)
Q Consensus 199 VwRLe~Igk~G~~hk~L~~--~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W 250 (304)
|-.|-+||+ ..-++|.. .||.|++|+.++. +++.|++.||..+-...|
T Consensus 243 v~~l~GiG~--~~~~~L~~~~~GI~ti~dL~~~~--~~~~L~~~fG~~~g~~l~ 292 (434)
T 2aq4_A 243 LDDLPGVGH--STLSRLESTFDSPHSLNDLRKRY--TLDALKASVGSKLGMKIH 292 (434)
T ss_dssp GGGSTTCCH--HHHHHHHHHTTCCCSHHHHHHHC--CHHHHHHHHCSSHHHHHH
T ss_pred cccccCcCH--HHHHHHHHhcCCceEHHHHHhcC--CHHHHHHHhCHHHHHHHH
Confidence 455556665 45589999 8999999999875 788999999843333333
No 14
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=64.45 E-value=2.6 Score=39.73 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=37.4
Q ss_pred eeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhc
Q 042429 199 VWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHAR 258 (304)
Q Consensus 199 VwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAk 258 (304)
|..|-+||+. .-++|...||.|++|+.+ .+++.|++.|| .+....+..+|+
T Consensus 181 v~~l~GiG~~--~~~~L~~~GI~Ti~dL~~---~~~~~L~~~fG----~~~g~~l~~~a~ 231 (362)
T 4f4y_A 181 IDEIPGIGSV--LARRLNELGIQKLRDILS---KNYNELEKITG----KAKALYLLKLAQ 231 (362)
T ss_dssp STTSTTCCST--THHHHHHTTCCBGGGGTT---SCHHHHHHHHC----HHHHHHHHHHHT
T ss_pred hhhccCCCHH--HHHHHHHcCCChHHHHhc---CCHHHHHHHhC----hHHHHHHHHHhc
Confidence 4445566665 448999999999999764 58899999997 345555666665
No 15
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=62.91 E-value=2.5 Score=39.35 Aligned_cols=54 Identities=28% Similarity=0.323 Sum_probs=40.0
Q ss_pred eeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhcccc
Q 042429 199 VWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCI 261 (304)
Q Consensus 199 VwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAktCv 261 (304)
|..|-+||+ ..-++|...||+|++|+.+ .+++.|++.||. .....+..||+--+
T Consensus 180 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d 233 (352)
T 1jx4_A 180 IADVPGIGN--ITAEKLKKLGINKLVDTLS---IEFDKLKGMIGE----AKAKYLISLARDEY 233 (352)
T ss_dssp GGGSTTCCH--HHHHHHHTTTCCBGGGGGS---SCHHHHHHHHCH----HHHHHHHHHHTTCC
T ss_pred CCcccccCH--HHHHHHHHcCCchHHHHHC---CCHHHHHHhcCh----hHHHHHHHHhCCCC
Confidence 556667775 4568999999999999875 688999999972 33556667776433
No 16
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=62.09 E-value=2.8 Score=39.05 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=40.5
Q ss_pred eeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhccccC
Q 042429 199 VWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIM 262 (304)
Q Consensus 199 VwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAktCvl 262 (304)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.|| ......+.+||+--+.
T Consensus 181 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG----~~~g~~l~~~a~G~d~ 235 (354)
T 3bq0_A 181 IDEIPGIGS--VLARRLNELGIQKLRDILS---KNYNELEKITG----KAKALYLLKLAQNKYS 235 (354)
T ss_dssp STTSTTCCH--HHHHHHTTTTCCBGGGGGG---SCHHHHHHHHC----HHHHHHHHHHHTTCCC
T ss_pred cccccCcCH--HHHHHHHHcCCccHHHHhc---CCHHHHHHHHC----HHHHHHHHHHhCCCCC
Confidence 455556665 4568999999999999875 68899999997 2336667777774443
No 17
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=55.35 E-value=8.4 Score=28.94 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=24.0
Q ss_pred chhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHH
Q 042429 213 KKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEAT 253 (304)
Q Consensus 213 k~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~ 253 (304)
.-|+.+||+||+|+++. +++.|.++= |+-.|.-+.+
T Consensus 22 NcLkragI~Tv~dL~~~---s~~dLlki~--n~G~kSl~EI 57 (73)
T 1z3e_B 22 NCLKRAGINTVQELANK---TEEDMMKVR--NLGRKSLEEV 57 (73)
T ss_dssp HHHHHTTCCBHHHHHTS---CHHHHHTST--TCCHHHHHHH
T ss_pred HHHHHcCCCcHHHHHcC---CHHHHHHcC--CCCHHHHHHH
Confidence 45889999999998874 566666662 3334444443
No 18
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=53.57 E-value=5.2 Score=39.87 Aligned_cols=40 Identities=35% Similarity=0.463 Sum_probs=31.5
Q ss_pred eeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcC
Q 042429 199 VWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGT 243 (304)
Q Consensus 199 VwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~ 243 (304)
|..|-+||+. .-++|...||.|++|+.+ .++..|++.||.
T Consensus 317 V~~l~GIG~~--t~~kL~~lGI~TigDLa~---~~~~~L~~~fG~ 356 (504)
T 3gqc_A 317 VTNLPGVGHS--MESKLASLGIKTCGDLQY---MTMAKLQKEFGP 356 (504)
T ss_dssp GGGSTTCCHH--HHHHHHHTTCCBHHHHTT---SCHHHHHHHHCH
T ss_pred hhHhhCcCHH--HHHHHHHcCCCcHHHHHh---ccHHHHHHhhCh
Confidence 4555566663 458999999999999864 588999999983
No 19
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=53.00 E-value=7.8 Score=35.74 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=42.5
Q ss_pred ceeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhc
Q 042429 198 EVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHAR 258 (304)
Q Consensus 198 eVwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAk 258 (304)
+..-|.+|+.+-+ ++|.++||.|++|+.. .+++++.++| +++++.-+.+.+-|.
T Consensus 158 pL~Qlp~i~~~~~--~~l~~~~i~s~~~l~~---~~~~e~~~ll--~~~~~~~~~v~~~~~ 211 (328)
T 3im1_A 158 PLRQIPHFNNKIL--EKCKEINVETVYDIMA---LEDEERDEIL--TLTDSQLAQVAAFVN 211 (328)
T ss_dssp GGGGSTTCCHHHH--HHHHHTTCCSHHHHHH---SCHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHH--HHHHhCCCCCHHHHhc---CCHHHHHhHh--CCCHHHHHHHHHHHH
Confidence 4566778877544 6799999999999976 4889999987 678888888777665
No 20
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=51.68 E-value=11 Score=29.24 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=25.0
Q ss_pred chhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHH
Q 042429 213 KKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIK 255 (304)
Q Consensus 213 k~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~ 255 (304)
.-|+.+||+||+|+++. +++.|.++ -|+-.|.-+.+.+
T Consensus 25 NcLkragI~Tv~dL~~~---se~dLlki--~n~G~KSl~EI~~ 62 (86)
T 3k4g_A 25 NCLXAEAIHYIGDLVQR---TEVELLXT--PNLGXXSLTEIXD 62 (86)
T ss_dssp HHHHHTTCCBHHHHHHS---CHHHHHTS--TTCCHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHhC---CHHHHhhc--cccCcccHHHHHH
Confidence 45899999999998875 55556555 2344555555443
No 21
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=43.12 E-value=17 Score=33.62 Aligned_cols=55 Identities=15% Similarity=0.286 Sum_probs=42.3
Q ss_pred ceeeeeeecccchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhcc
Q 042429 198 EVWRLEKIGRSGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHART 259 (304)
Q Consensus 198 eVwRLe~Igk~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAkt 259 (304)
+..-|.+|+.+ .-++|.++||.|++||.. .+++++.++|| +++..-+.+.+-+..
T Consensus 162 pL~Qlp~i~~~--~~~~l~~~~i~s~~~l~~---~~~~e~~~ll~--l~~~~~~~i~~~~~~ 216 (339)
T 2q0z_X 162 YLKQLPHFTSE--HIKRCTDKGVESVFDIME---MEDEERNALLQ--LTDSQIADVARFCNR 216 (339)
T ss_dssp GGGGSTTCCHH--HHHHHHHTTCCSHHHHHH---SCHHHHHHHHC--CCHHHHHHHHHHHTT
T ss_pred ceecCCCCCHH--HHHHHHhcCCCCHHHHHh---CCHHHHHHHHC--CCHHHHHHHHHHHHh
Confidence 46677788765 347899999999999875 68999999985 788776777665543
No 22
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=41.18 E-value=11 Score=28.89 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=23.6
Q ss_pred chhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHH
Q 042429 213 KKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATI 254 (304)
Q Consensus 213 k~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v 254 (304)
.-|+.+||+||+|+++. +++.|.++= |+-.|.-+.+.
T Consensus 29 NcLk~agI~Tv~dL~~~---se~dLlki~--n~G~kSl~EI~ 65 (79)
T 3gfk_B 29 NCLKRAGINTVQELANK---TEEDMMKVR--NLGRKSLEEVK 65 (79)
T ss_dssp HHHHHTTCCBHHHHTTC---CHHHHTTST--TCHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHhC---CHHHHHHcC--CCCHhHHHHHH
Confidence 55899999999998764 555555551 33344444443
No 23
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=35.47 E-value=12 Score=36.10 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=36.1
Q ss_pred eeeeeeecccchhhch-hhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhcccc
Q 042429 199 VWRLEKIGRSGTFYKK-LTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCI 261 (304)
Q Consensus 199 VwRLe~Igk~G~~hk~-L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAktCv 261 (304)
|..|-+||+. .-++ |...||.|++|+.+ .++..|++.|| .+.-..+.+||+--+
T Consensus 255 v~~l~GiG~~--~~~~lL~~lGI~TigdLa~---~~~~~L~~~fG----~~~g~~L~~~a~G~d 309 (435)
T 4ecq_A 255 IRKIRSLGGK--LGASVIEILGIEYMGELTQ---FTESQLQSHFG----EKNGSWLYAMCRGIE 309 (435)
T ss_dssp GGGSTTCSSH--HHHHHHHHHTCCBGGGGGG---SCHHHHHHHHC----HHHHHHHHHHTTTCC
T ss_pred HHHhcCCCHH--HHHHHHHHcCCCcHHHHhh---CCHHHHHHHhC----ccHHHHHHHHhhCCC
Confidence 4445566542 3244 89999999999875 58899999997 344444556665433
No 24
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=35.01 E-value=21 Score=28.38 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.0
Q ss_pred hchhhhcCCccHHHHHHh
Q 042429 212 YKKLTASGIKTVQDFLKM 229 (304)
Q Consensus 212 hk~L~~~~I~tV~dFlkl 229 (304)
..-|+.+||+||+|+++.
T Consensus 36 ~NcLkragI~Tv~dL~~~ 53 (98)
T 1coo_A 36 ANCLKAEAIHYIGDLVQR 53 (98)
T ss_dssp HHHHHTTTCCBHHHHHTS
T ss_pred HHHHHHcCCCcHHHHHhC
Confidence 356889999999998875
No 25
>2f8v_T Telethonin; sarcomere, titin, Z1Z2, contractIle protein-CONT protein complex; 2.75A {Homo sapiens}
Probab=31.39 E-value=11 Score=32.69 Aligned_cols=38 Identities=32% Similarity=0.428 Sum_probs=15.7
Q ss_pred ccCCCccccc--cC--CCCceEEEEccCCCCCcccCCceeec
Q 042429 18 LTRSLPLCFQ--AL--ESSSLKLTFSEELSLPIFTGRKITDI 55 (304)
Q Consensus 18 ~~rs~~~~~~--~~--~~~~~~L~F~n~l~~pifT~~~I~a~ 55 (304)
..|||...+. .. .-+.|||=|.|-|++||||-.++.+.
T Consensus 61 VQr~P~qvmrMG~~g~~lqEYqLPY~~~LPlPIFtPak~~~~ 102 (167)
T 2f8v_T 61 VQRSPWLMMRMGILGRGLQEYQLPYQRVLPLPIFTPAKMGAT 102 (167)
T ss_dssp EECCTTTEEEEEETTSCCEEEESSCCCC--------------
T ss_pred HHhChHHHhhhhhccccchhhccchhccCCccccchhhcCCc
Confidence 3577765542 22 23479999999999999999988743
No 26
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=30.14 E-value=11 Score=29.45 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=18.1
Q ss_pred eeeecccchhhchhhhcCCccHHHHHHh
Q 042429 202 LEKIGRSGTFYKKLTASGIKTVQDFLKM 229 (304)
Q Consensus 202 Le~Igk~G~~hk~L~~~~I~tV~dFlkl 229 (304)
|-+||+.- -+.|.+.||.||+||..+
T Consensus 9 LPNig~~~--e~~L~~~GI~t~~~Lr~~ 34 (93)
T 3mab_A 9 LPNIGKVL--EQDLIKAGIKTPVELKDV 34 (93)
T ss_dssp STTCCHHH--HHHHHHTTCCSHHHHHHH
T ss_pred CCCCCHHH--HHHHHHcCCCCHHHHHhC
Confidence 34445432 367999999999998765
No 27
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=28.31 E-value=30 Score=25.59 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=39.4
Q ss_pred cchhhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhccccC
Q 042429 208 SGTFYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHARTCIM 262 (304)
Q Consensus 208 ~G~~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAktCvl 262 (304)
+-..-++|.++|++||++. .+.+++.|-.|- |+|...=+.+.+-|+..+.
T Consensus 15 ~e~~a~~L~~~Gf~tve~v---A~~~~~eL~~I~--G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 15 DEDFATVLVEEGFSTLEEL---AYVPMKELLEIE--GLDEPTVEALRERAKNALA 64 (70)
T ss_dssp CHHHHHHHHHTTCCCHHHH---HHSCHHHHTTST--TCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCcCcHHHH---HcCCHHHHhhcc--CCCHHHHHHHHHHHHHHHH
Confidence 3345689999999999965 456778888874 7899999999998887654
No 28
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=26.68 E-value=14 Score=28.81 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=18.8
Q ss_pred eeeecccchhhchhhhcCCccHHHHHHh
Q 042429 202 LEKIGRSGTFYKKLTASGIKTVQDFLKM 229 (304)
Q Consensus 202 Le~Igk~G~~hk~L~~~~I~tV~dFlkl 229 (304)
|-+||+. .-+.|.+.||.||+||..+
T Consensus 9 LPNiG~~--~e~~L~~vGI~s~e~L~~~ 34 (93)
T 3bqs_A 9 LPNIGKV--LEQDLIKAGIKTPVELKDV 34 (93)
T ss_dssp STTCCHH--HHHHHHHTTCCSHHHHHHH
T ss_pred CCCCCHH--HHHHHHHcCCCCHHHHHhC
Confidence 4445553 3377999999999998865
No 29
>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_G
Probab=25.13 E-value=76 Score=28.94 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=38.8
Q ss_pred chhhhcCCccHHHHHHhhc--CChHHHHHHHcCCC--ChhhHHHHHHhhcccc
Q 042429 213 KKLTASGIKTVQDFLKMSI--VEPQKLRRILGTGM--SEKMWEATIKHARTCI 261 (304)
Q Consensus 213 k~L~~~~I~tV~dFlkl~~--~d~~kLr~iLg~~m--s~k~W~~~v~HAktCv 261 (304)
++|++.||.|+++...-+. .|+++|.++++..+ |+..-+++-+-.++|-
T Consensus 107 erLa~~gift~qeL~eeL~sl~dE~kLlkl~~~R~~GSDlD~~kl~ekv~~sL 159 (234)
T 3euh_C 107 ERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSL 159 (234)
T ss_dssp GGGGGTTEEEHHHHHHHHHHHSCHHHHHHHHSSSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcccHHHHHHHHHHhhCHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 6899999999999887763 58999999985222 6777777888777774
No 30
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=22.96 E-value=38 Score=33.83 Aligned_cols=40 Identities=30% Similarity=0.543 Sum_probs=31.0
Q ss_pred hhchhhhcCCccHHHHHHhhcCChHHHHHHHcCCCChhhHHHHHHhhc
Q 042429 211 FYKKLTASGIKTVQDFLKMSIVEPQKLRRILGTGMSEKMWEATIKHAR 258 (304)
Q Consensus 211 ~hk~L~~~~I~tV~dFlkl~~~d~~kLr~iLg~~ms~k~W~~~v~HAk 258 (304)
..++|.++||.|++|+. .++++|.+++| .+.-+.+++-|+
T Consensus 669 rar~L~~~g~~s~~~l~----~~~~~l~~~l~----~~~~~~i~~~~~ 708 (715)
T 2va8_A 669 RARLLYNNGIKELGDVV----MNPDKVKNLLG----QKLGEKVVQEAA 708 (715)
T ss_dssp HHHHHHHTTCCSHHHHH----HCHHHHHHHHC----HHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHh----CCHHHHHHHhC----hhHHHHHHHHHH
Confidence 44678899999999965 57889999985 677777777554
No 31
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=21.27 E-value=1.2e+02 Score=27.73 Aligned_cols=74 Identities=15% Similarity=0.250 Sum_probs=50.1
Q ss_pred cCCcccccCCCCCCCCcee-eeeeecc-cchhhchhhh---cCCcc----HHHHHHhh-------c-CChHHHHHHHcCC
Q 042429 182 HRGELYKKHHPQMLEDEVW-RLEKIGR-SGTFYKKLTA---SGIKT----VQDFLKMS-------I-VEPQKLRRILGTG 244 (304)
Q Consensus 182 ~Rge~~kKh~pP~L~DeVw-RLe~Igk-~G~~hk~L~~---~~I~t----V~dFlkl~-------~-~d~~kLr~iLg~~ 244 (304)
|..|.+ ..+.+.|+|- +..+|-. +|...--|.. ..+.. +=++|+.. . .+|+.+++.| |
T Consensus 182 h~SEl~---~~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~~~~~~~a~~il~~L~~~~G~l~~~DkS~pe~I~~~f--~ 256 (285)
T 3go5_A 182 HPSERY---AEPRLGQVLDARVIGFREVDRTLNLSLKPRSFEMLENDAQMILTYLESNGGFMTLNDKSSPDDIKATF--G 256 (285)
T ss_dssp CGGGCS---SCCCTTCEEEEEEEEEETTTTEEEEECSCCCCCCCCHHHHHHHHHHHHTTTEESCCTTSCHHHHHHHH--S
T ss_pred EHHHcc---ccCCCCCEEEEEEEEEECCCCeEEEEeChhhhhccchHHHHHHHHHHhcCCeeccCCCCCHHHHHHHh--C
Confidence 445554 4689999986 7788877 7776544444 33432 22333321 2 3689999999 7
Q ss_pred CChhhHHHHHHhhccc
Q 042429 245 MSEKMWEATIKHARTC 260 (304)
Q Consensus 245 ms~k~W~~~v~HAktC 260 (304)
||++..+.++-|=++-
T Consensus 257 ~SK~~FKrAiG~L~K~ 272 (285)
T 3go5_A 257 ISKGQFKKALGGLMKA 272 (285)
T ss_dssp SCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHhhC
Confidence 9999999999997653
Done!