Query 042432
Match_columns 190
No_of_seqs 188 out of 1889
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 06:07:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 4.8E-21 1E-25 141.1 13.8 123 64-187 11-157 (160)
2 KOG0027 Calmodulin and related 99.8 1.3E-19 2.8E-24 134.2 14.1 117 70-187 5-150 (151)
3 KOG0028 Ca2+-binding protein ( 99.8 2.2E-17 4.8E-22 119.8 13.0 122 64-187 24-171 (172)
4 KOG0031 Myosin regulatory ligh 99.7 4.4E-16 9.6E-21 112.4 13.3 119 65-185 24-164 (171)
5 PTZ00183 centrin; Provisional 99.7 9.3E-16 2E-20 113.4 14.1 100 75-186 55-154 (158)
6 PTZ00184 calmodulin; Provision 99.7 9.3E-16 2E-20 112.1 13.7 101 74-186 48-148 (149)
7 KOG0034 Ca2+/calmodulin-depend 99.6 8.1E-15 1.8E-19 111.4 11.8 101 75-187 68-176 (187)
8 KOG0030 Myosin essential light 99.6 2.7E-14 5.8E-19 101.5 12.4 116 68-185 6-150 (152)
9 KOG0037 Ca2+-binding protein, 99.5 2.3E-13 4.9E-18 103.9 12.0 102 66-186 87-188 (221)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.5 2.9E-13 6.2E-18 103.1 10.3 105 69-185 60-174 (193)
11 PF13499 EF-hand_7: EF-hand do 99.4 3.9E-13 8.5E-18 85.5 7.2 62 122-184 1-66 (66)
12 cd05022 S-100A13 S-100A13: S-1 99.4 3.8E-13 8.2E-18 90.6 7.1 67 120-187 7-76 (89)
13 cd05027 S-100B S-100B: S-100B 99.4 4.6E-12 1E-16 85.3 8.0 66 120-186 7-79 (88)
14 KOG0036 Predicted mitochondria 99.3 1.4E-11 2.9E-16 101.9 11.3 104 64-185 42-145 (463)
15 PLN02964 phosphatidylserine de 99.3 1.3E-11 2.7E-16 109.1 11.8 107 65-187 135-244 (644)
16 KOG0038 Ca2+-binding kinase in 99.3 1.2E-11 2.5E-16 89.0 8.6 100 76-186 74-177 (189)
17 cd05031 S-100A10_like S-100A10 99.3 2.9E-11 6.2E-16 82.4 7.5 66 120-186 7-79 (94)
18 cd05026 S-100Z S-100Z: S-100Z 99.2 3.6E-11 7.7E-16 81.8 7.7 67 120-187 9-82 (93)
19 cd05025 S-100A1 S-100A1: S-100 99.2 4.5E-11 9.8E-16 81.1 8.1 67 120-187 8-81 (92)
20 cd05029 S-100A6 S-100A6: S-100 99.2 4.2E-11 9E-16 80.6 7.8 67 120-187 9-80 (88)
21 KOG0027 Calmodulin and related 99.2 6.4E-11 1.4E-15 87.6 8.8 69 119-188 6-74 (151)
22 KOG0037 Ca2+-binding protein, 99.2 3.1E-10 6.8E-15 86.8 12.6 122 28-185 94-219 (221)
23 PF13833 EF-hand_8: EF-hand do 99.2 6.1E-11 1.3E-15 72.4 6.5 53 134-187 1-54 (54)
24 PF13499 EF-hand_7: EF-hand do 99.2 7.2E-11 1.6E-15 74.9 5.6 64 74-147 1-66 (66)
25 cd00052 EH Eps15 homology doma 99.1 2.2E-10 4.8E-15 72.6 7.2 60 124-186 2-61 (67)
26 cd00213 S-100 S-100: S-100 dom 99.1 1.1E-10 2.4E-15 78.4 6.0 70 119-188 6-81 (88)
27 cd05023 S-100A11 S-100A11: S-1 99.1 4.1E-10 8.8E-15 75.9 8.1 68 119-187 7-81 (89)
28 smart00027 EH Eps15 homology d 99.1 3.9E-10 8.5E-15 77.1 8.0 65 119-186 8-72 (96)
29 cd00051 EFh EF-hand, calcium b 99.1 6.4E-10 1.4E-14 68.3 7.2 61 123-184 2-62 (63)
30 KOG0377 Protein serine/threoni 99.1 1.6E-09 3.4E-14 90.6 11.2 107 74-185 465-614 (631)
31 COG5126 FRQ1 Ca2+-binding prot 99.1 9.7E-10 2.1E-14 81.3 8.2 67 120-188 19-85 (160)
32 KOG4223 Reticulocalbin, calume 99.0 9.6E-10 2.1E-14 88.6 7.3 99 75-184 202-303 (325)
33 KOG0044 Ca2+ sensor (EF-Hand s 99.0 5.2E-09 1.1E-13 79.9 10.7 109 68-188 21-130 (193)
34 KOG4223 Reticulocalbin, calume 99.0 7E-09 1.5E-13 83.7 11.5 117 72-188 76-230 (325)
35 cd00252 SPARC_EC SPARC_EC; ext 99.0 2.2E-09 4.8E-14 75.7 7.5 63 119-186 46-108 (116)
36 PF14658 EF-hand_9: EF-hand do 98.9 4.4E-09 9.6E-14 66.1 6.6 64 125-188 2-66 (66)
37 KOG0034 Ca2+/calmodulin-depend 98.9 1.2E-08 2.5E-13 77.8 9.8 106 67-189 27-135 (187)
38 PTZ00184 calmodulin; Provision 98.9 9.5E-09 2.1E-13 74.7 8.5 66 120-186 10-75 (149)
39 cd05030 calgranulins Calgranul 98.9 7E-09 1.5E-13 69.8 6.9 68 120-188 7-81 (88)
40 smart00027 EH Eps15 homology d 98.9 1.1E-08 2.4E-13 69.8 7.8 69 67-149 4-72 (96)
41 PTZ00183 centrin; Provisional 98.9 1.4E-08 3.1E-13 74.8 8.9 66 120-185 52-117 (158)
42 cd05022 S-100A13 S-100A13: S-1 98.8 1.5E-08 3.3E-13 68.2 7.3 68 71-150 6-76 (89)
43 cd00252 SPARC_EC SPARC_EC; ext 98.8 3.8E-08 8.1E-13 69.5 9.0 65 67-147 42-106 (116)
44 PLN02964 phosphatidylserine de 98.8 4.5E-08 9.9E-13 86.9 11.6 103 35-149 135-243 (644)
45 KOG0028 Ca2+-binding protein ( 98.8 1.7E-08 3.7E-13 73.8 7.1 69 120-189 32-100 (172)
46 KOG0036 Predicted mitochondria 98.8 6E-08 1.3E-12 80.6 11.0 101 69-186 10-110 (463)
47 cd05027 S-100B S-100B: S-100B 98.8 4.2E-08 9.1E-13 66.0 8.2 71 72-149 7-79 (88)
48 cd05026 S-100Z S-100Z: S-100Z 98.8 4.2E-08 9.1E-13 66.7 7.8 72 72-150 9-82 (93)
49 cd00052 EH Eps15 homology doma 98.7 6.3E-08 1.4E-12 61.1 6.9 60 76-149 2-61 (67)
50 cd05025 S-100A1 S-100A1: S-100 98.7 1.1E-07 2.5E-12 64.3 8.4 71 72-150 8-81 (92)
51 cd05031 S-100A10_like S-100A10 98.7 8.5E-08 1.8E-12 65.2 7.5 74 72-152 7-82 (94)
52 KOG2643 Ca2+ binding protein, 98.7 4.2E-08 9E-13 82.0 6.2 37 151-188 419-455 (489)
53 cd00051 EFh EF-hand, calcium b 98.7 1.6E-07 3.4E-12 57.4 7.4 61 75-147 2-62 (63)
54 KOG0041 Predicted Ca2+-binding 98.6 8.8E-08 1.9E-12 72.6 6.7 67 120-187 98-164 (244)
55 KOG0031 Myosin regulatory ligh 98.6 2.7E-07 5.8E-12 67.2 7.9 66 119-189 30-95 (171)
56 cd00213 S-100 S-100: S-100 dom 98.6 3.1E-07 6.7E-12 61.5 7.8 73 70-149 5-79 (88)
57 PF00036 EF-hand_1: EF hand; 98.6 7.3E-08 1.6E-12 51.1 3.4 28 74-101 1-28 (29)
58 PF00036 EF-hand_1: EF hand; 98.5 1.5E-07 3.1E-12 49.9 3.5 26 123-148 2-27 (29)
59 cd05024 S-100A10 S-100A10: A s 98.5 1.6E-06 3.5E-11 58.3 8.1 65 120-186 7-76 (91)
60 cd05029 S-100A6 S-100A6: S-100 98.4 1.2E-06 2.6E-11 58.9 7.3 70 72-150 9-80 (88)
61 PRK12309 transaldolase/EF-hand 98.4 2.2E-06 4.7E-11 72.5 10.5 85 90-188 296-387 (391)
62 PF13833 EF-hand_8: EF-hand do 98.4 1E-06 2.3E-11 53.4 6.1 52 86-149 1-53 (54)
63 cd05023 S-100A11 S-100A11: S-1 98.4 2.2E-06 4.8E-11 57.7 7.8 73 71-150 7-81 (89)
64 KOG0030 Myosin essential light 98.4 1.5E-06 3.3E-11 62.2 6.5 70 116-186 6-77 (152)
65 PF13405 EF-hand_6: EF-hand do 98.3 6.8E-07 1.5E-11 48.0 3.5 30 122-151 1-31 (31)
66 KOG4666 Predicted phosphate ac 98.3 1.7E-06 3.6E-11 70.2 5.9 100 73-186 259-359 (412)
67 KOG0041 Predicted Ca2+-binding 98.2 1.1E-05 2.3E-10 61.4 8.8 102 68-181 94-198 (244)
68 PF14658 EF-hand_9: EF-hand do 98.2 8.5E-06 1.8E-10 51.3 6.6 61 78-149 3-64 (66)
69 KOG2643 Ca2+ binding protein, 98.2 1.4E-06 3E-11 73.1 3.4 92 82-187 208-315 (489)
70 PF12763 EF-hand_4: Cytoskelet 98.2 1.3E-05 2.9E-10 55.4 7.7 64 118-185 7-70 (104)
71 PF14788 EF-hand_10: EF hand; 98.2 7.3E-06 1.6E-10 48.8 5.4 49 137-186 1-49 (51)
72 PF13202 EF-hand_5: EF hand; P 98.1 4.4E-06 9.5E-11 42.6 3.2 25 75-99 1-25 (25)
73 PF13405 EF-hand_6: EF-hand do 98.0 6.1E-06 1.3E-10 44.2 3.3 27 74-100 1-27 (31)
74 cd05030 calgranulins Calgranul 98.0 2.1E-05 4.5E-10 52.8 6.6 72 72-150 7-80 (88)
75 KOG0377 Protein serine/threoni 98.0 2.5E-05 5.5E-10 65.9 7.9 69 74-150 548-616 (631)
76 PF13202 EF-hand_5: EF hand; P 98.0 7.2E-06 1.6E-10 41.8 3.0 23 124-146 2-24 (25)
77 KOG0040 Ca2+-binding actin-bun 97.9 0.00013 2.8E-09 69.3 11.7 68 120-187 2252-2325(2399)
78 KOG0040 Ca2+-binding actin-bun 97.9 0.00014 3E-09 69.1 11.6 111 64-180 2244-2355(2399)
79 KOG4251 Calcium binding protei 97.9 2.7E-05 5.8E-10 61.1 6.0 107 73-189 101-230 (362)
80 PF12763 EF-hand_4: Cytoskelet 97.9 7.5E-05 1.6E-09 51.7 6.8 69 66-149 3-71 (104)
81 PRK12309 transaldolase/EF-hand 97.8 4.9E-05 1.1E-09 64.4 6.7 53 72-149 333-385 (391)
82 PF10591 SPARC_Ca_bdg: Secrete 97.8 1.2E-05 2.7E-10 56.5 1.9 62 118-182 51-112 (113)
83 KOG4065 Uncharacterized conser 97.7 8.9E-05 1.9E-09 51.6 5.3 59 125-183 71-142 (144)
84 PF14788 EF-hand_10: EF hand; 97.7 0.00013 2.8E-09 43.5 4.9 50 89-150 1-50 (51)
85 KOG4251 Calcium binding protei 97.6 0.00012 2.6E-09 57.5 5.7 101 75-182 238-341 (362)
86 cd05024 S-100A10 S-100A10: A s 97.6 0.001 2.2E-08 44.8 8.9 71 72-150 7-77 (91)
87 KOG0046 Ca2+-binding actin-bun 97.5 0.00031 6.6E-09 60.6 7.3 67 120-187 18-86 (627)
88 KOG2562 Protein phosphatase 2 97.4 0.00085 1.9E-08 57.1 8.4 66 117-182 347-420 (493)
89 KOG2562 Protein phosphatase 2 97.3 0.0011 2.4E-08 56.5 7.2 96 75-186 280-379 (493)
90 PF10591 SPARC_Ca_bdg: Secrete 97.2 0.00022 4.9E-09 50.1 2.3 65 67-145 48-112 (113)
91 KOG0751 Mitochondrial aspartat 97.0 0.0037 8E-08 53.8 8.3 100 75-181 110-239 (694)
92 smart00054 EFh EF-hand, calciu 97.0 0.00076 1.6E-08 33.9 2.7 26 75-100 2-27 (29)
93 smart00054 EFh EF-hand, calciu 96.9 0.0012 2.6E-08 33.1 3.1 25 124-148 3-27 (29)
94 KOG0751 Mitochondrial aspartat 96.9 0.023 4.9E-07 49.2 11.7 95 80-188 81-177 (694)
95 KOG1029 Endocytic adaptor prot 96.9 0.007 1.5E-07 54.7 8.9 63 120-185 194-256 (1118)
96 PF09279 EF-hand_like: Phospho 96.9 0.0031 6.8E-08 41.5 5.3 66 122-188 1-71 (83)
97 KOG0169 Phosphoinositide-speci 96.8 0.013 2.8E-07 52.8 10.1 105 64-185 127-231 (746)
98 KOG0046 Ca2+-binding actin-bun 96.7 0.0055 1.2E-07 53.1 6.8 77 64-150 10-86 (627)
99 PF05042 Caleosin: Caleosin re 96.7 0.037 8.1E-07 41.5 10.2 112 74-186 8-166 (174)
100 KOG3555 Ca2+-binding proteogly 96.4 0.016 3.5E-07 47.8 7.2 73 72-162 249-321 (434)
101 KOG0038 Ca2+-binding kinase in 96.1 0.02 4.4E-07 41.7 5.6 64 75-149 110-177 (189)
102 KOG2243 Ca2+ release channel ( 95.8 0.51 1.1E-05 46.0 14.5 61 125-187 4061-4121(5019)
103 KOG1707 Predicted Ras related/ 95.7 0.069 1.5E-06 47.2 8.4 61 120-184 314-375 (625)
104 KOG1955 Ral-GTPase effector RA 95.1 0.043 9.3E-07 47.5 5.2 63 120-185 230-292 (737)
105 KOG4578 Uncharacterized conser 95.0 0.017 3.7E-07 47.4 2.4 61 122-185 334-397 (421)
106 PF08726 EFhand_Ca_insen: Ca2+ 95.0 0.014 3.1E-07 37.2 1.6 57 118-183 3-66 (69)
107 KOG3555 Ca2+-binding proteogly 94.4 0.071 1.5E-06 44.2 4.5 63 119-186 248-310 (434)
108 KOG4065 Uncharacterized conser 94.3 0.15 3.3E-06 35.7 5.4 67 78-146 72-142 (144)
109 PLN02952 phosphoinositide phos 94.1 0.55 1.2E-05 42.2 9.9 90 86-186 13-110 (599)
110 KOG0035 Ca2+-binding actin-bun 93.7 0.21 4.5E-06 46.4 6.6 69 120-189 746-819 (890)
111 KOG4666 Predicted phosphate ac 93.5 0.089 1.9E-06 43.3 3.5 68 120-187 258-325 (412)
112 KOG3866 DNA-binding protein of 93.4 0.21 4.5E-06 41.0 5.5 64 123-186 246-324 (442)
113 KOG0169 Phosphoinositide-speci 93.1 0.39 8.5E-06 43.7 7.3 70 117-187 132-201 (746)
114 KOG1955 Ral-GTPase effector RA 92.9 0.24 5.2E-06 43.1 5.4 71 65-149 223-293 (737)
115 PF09279 EF-hand_like: Phospho 92.9 0.27 5.8E-06 32.1 4.7 66 74-150 1-70 (83)
116 KOG4578 Uncharacterized conser 92.9 0.088 1.9E-06 43.3 2.7 64 75-149 335-398 (421)
117 PF05042 Caleosin: Caleosin re 92.8 0.59 1.3E-05 35.1 6.8 67 121-187 7-125 (174)
118 KOG1029 Endocytic adaptor prot 91.7 0.35 7.6E-06 44.2 5.1 63 72-148 194-256 (1118)
119 KOG4347 GTPase-activating prot 91.2 0.3 6.5E-06 43.7 4.2 56 75-143 557-612 (671)
120 KOG0042 Glycerol-3-phosphate d 90.9 0.44 9.6E-06 42.2 4.9 66 120-186 592-657 (680)
121 PF05517 p25-alpha: p25-alpha 89.0 2.8 6E-05 31.0 7.3 60 126-186 7-69 (154)
122 PF09069 EF-hand_3: EF-hand; 86.9 7.2 0.00016 26.1 8.7 73 73-149 3-75 (90)
123 KOG0042 Glycerol-3-phosphate d 85.9 1.4 3.1E-05 39.1 4.8 78 62-151 582-659 (680)
124 KOG1265 Phospholipase C [Lipid 85.3 12 0.00027 35.3 10.4 67 120-186 220-299 (1189)
125 PF09068 EF-hand_2: EF hand; 85.0 12 0.00025 26.8 10.4 106 35-150 10-126 (127)
126 KOG3866 DNA-binding protein of 85.0 2 4.3E-05 35.4 4.9 70 78-149 249-324 (442)
127 PF09069 EF-hand_3: EF-hand; 84.2 10 0.00022 25.4 7.7 64 120-186 2-75 (90)
128 KOG4347 GTPase-activating prot 82.2 3.6 7.8E-05 37.1 5.7 74 103-179 538-611 (671)
129 KOG0035 Ca2+-binding actin-bun 79.6 8.5 0.00018 36.2 7.3 38 65-102 739-776 (890)
130 KOG1707 Predicted Ras related/ 72.5 7.9 0.00017 34.7 5.0 78 25-102 259-344 (625)
131 KOG2871 Uncharacterized conser 72.0 3.1 6.7E-05 35.1 2.3 65 119-183 307-371 (449)
132 KOG0998 Synaptic vesicle prote 70.5 1.9 4.2E-05 40.5 0.9 64 120-186 282-345 (847)
133 PF09068 EF-hand_2: EF hand; 70.2 14 0.0003 26.4 5.1 26 75-100 99-124 (127)
134 PLN02222 phosphoinositide phos 69.5 20 0.00044 32.4 7.0 67 119-187 23-91 (581)
135 KOG0039 Ferric reductase, NADH 68.5 11 0.00024 34.4 5.3 79 87-185 2-88 (646)
136 PF13608 Potyvirid-P3: Protein 68.3 35 0.00076 29.8 8.1 95 70-165 286-399 (445)
137 COG4359 Uncharacterized conser 68.3 15 0.00033 28.2 5.1 78 84-186 8-87 (220)
138 PLN02228 Phosphoinositide phos 68.2 29 0.00062 31.3 7.6 69 118-188 21-94 (567)
139 PF14513 DAG_kinase_N: Diacylg 67.3 4.4 9.5E-05 29.4 2.0 52 135-189 5-63 (138)
140 PLN02230 phosphoinositide phos 67.1 29 0.00062 31.5 7.4 68 118-186 26-102 (598)
141 PF00404 Dockerin_1: Dockerin 66.1 11 0.00024 18.0 2.7 17 83-99 1-17 (21)
142 KOG3449 60S acidic ribosomal p 64.9 44 0.00096 23.2 6.5 55 123-183 3-57 (112)
143 PF14513 DAG_kinase_N: Diacylg 61.7 39 0.00085 24.5 6.1 68 88-170 6-81 (138)
144 cd07313 terB_like_2 tellurium 61.5 8.1 0.00018 26.0 2.5 52 135-187 13-66 (104)
145 PF08414 NADPH_Ox: Respiratory 61.2 36 0.00079 23.2 5.4 62 72-150 29-93 (100)
146 KOG2243 Ca2+ release channel ( 57.6 22 0.00047 35.7 5.1 57 78-147 4062-4118(5019)
147 PF08726 EFhand_Ca_insen: Ca2+ 57.6 15 0.00033 23.3 2.9 27 72-99 5-31 (69)
148 PF05517 p25-alpha: p25-alpha 54.8 56 0.0012 24.0 6.1 63 79-150 8-70 (154)
149 PLN02952 phosphoinositide phos 54.6 36 0.00078 30.9 5.9 52 134-186 13-65 (599)
150 KOG4004 Matricellular protein 52.4 6.8 0.00015 30.3 0.9 54 127-184 193-248 (259)
151 PF07308 DUF1456: Protein of u 52.3 58 0.0012 20.5 5.3 27 141-168 17-43 (68)
152 KOG0998 Synaptic vesicle prote 50.8 8.2 0.00018 36.5 1.3 69 66-148 276-344 (847)
153 KOG2301 Voltage-gated Ca2+ cha 48.2 44 0.00095 34.0 5.8 37 66-102 1410-1446(1592)
154 KOG4286 Dystrophin-like protei 48.0 2.5E+02 0.0053 26.6 10.1 118 64-184 411-531 (966)
155 KOG1265 Phospholipase C [Lipid 44.6 1.8E+02 0.004 28.0 8.7 87 82-187 157-250 (1189)
156 PF08414 NADPH_Ox: Respiratory 42.5 1.1E+02 0.0024 20.9 5.8 61 120-186 29-92 (100)
157 PLN02223 phosphoinositide phos 42.0 1E+02 0.0022 27.7 6.5 67 119-186 14-92 (537)
158 PF07499 RuvA_C: RuvA, C-termi 41.4 68 0.0015 18.3 3.8 43 140-187 3-45 (47)
159 PF03672 UPF0154: Uncharacteri 41.2 60 0.0013 20.3 3.7 33 134-167 28-60 (64)
160 PF11116 DUF2624: Protein of u 41.0 1.1E+02 0.0023 20.3 5.7 30 137-167 14-43 (85)
161 TIGR01848 PHA_reg_PhaR polyhyd 40.1 28 0.00061 24.1 2.3 69 80-170 10-81 (107)
162 PF08461 HTH_12: Ribonuclease 40.1 37 0.0008 21.1 2.7 37 134-171 10-46 (66)
163 PTZ00373 60S Acidic ribosomal 39.0 97 0.0021 21.6 4.9 52 125-182 7-58 (112)
164 PF13623 SurA_N_2: SurA N-term 38.4 1.6E+02 0.0034 21.5 7.6 40 142-183 94-144 (145)
165 PLN02228 Phosphoinositide phos 38.3 1.8E+02 0.0038 26.4 7.6 67 71-149 22-92 (567)
166 PF01023 S_100: S-100/ICaBP ty 38.1 67 0.0014 18.2 3.4 17 173-189 23-39 (44)
167 PF07879 PHB_acc_N: PHB/PHA ac 37.3 19 0.00042 22.4 1.0 46 80-147 10-55 (64)
168 PRK00523 hypothetical protein; 37.1 73 0.0016 20.4 3.7 33 134-167 36-68 (72)
169 KOG4070 Putative signal transd 36.7 72 0.0016 23.6 4.1 84 74-166 13-106 (180)
170 cd07316 terB_like_DjlA N-termi 36.4 87 0.0019 20.7 4.4 12 175-186 53-64 (106)
171 COG3763 Uncharacterized protei 36.1 79 0.0017 20.1 3.7 34 134-168 35-68 (71)
172 TIGR02675 tape_meas_nterm tape 34.7 1.2E+02 0.0027 19.2 4.7 17 86-102 27-43 (75)
173 KOG4286 Dystrophin-like protei 34.6 1.8E+02 0.004 27.3 7.1 95 75-185 472-579 (966)
174 cd05833 Ribosomal_P2 Ribosomal 34.5 1.6E+02 0.0034 20.4 6.6 56 125-186 5-60 (109)
175 PF02761 Cbl_N2: CBL proto-onc 34.0 1.4E+02 0.0031 19.7 5.3 48 136-184 21-68 (85)
176 TIGR01639 P_fal_TIGR01639 Plas 32.9 86 0.0019 19.1 3.5 31 136-167 8-38 (61)
177 PF09373 PMBR: Pseudomurein-bi 32.7 46 0.001 17.6 2.0 15 172-186 2-16 (33)
178 KOG1954 Endocytosis/signaling 32.3 66 0.0014 27.7 3.8 54 125-182 448-501 (532)
179 KOG2419 Phosphatidylserine dec 30.6 54 0.0012 30.1 3.1 71 75-148 439-532 (975)
180 PRK01844 hypothetical protein; 29.6 1.1E+02 0.0024 19.6 3.6 33 134-167 35-67 (72)
181 PF05279 Asp-B-Hydro_N: Aspart 29.4 58 0.0012 26.0 2.8 22 78-99 44-65 (243)
182 TIGR03573 WbuX N-acetyl sugar 29.1 1.2E+02 0.0025 25.4 4.8 43 135-184 300-342 (343)
183 TIGR01848 PHA_reg_PhaR polyhyd 28.8 1.9E+02 0.004 20.1 4.8 55 128-184 10-74 (107)
184 PF01885 PTS_2-RNA: RNA 2'-pho 28.4 1E+02 0.0022 23.4 4.0 37 131-168 26-62 (186)
185 PF12174 RST: RCD1-SRO-TAF4 (R 27.9 41 0.00088 21.4 1.4 14 172-185 39-52 (70)
186 KOG4301 Beta-dystrobrevin [Cyt 27.6 84 0.0018 26.5 3.5 60 127-188 116-175 (434)
187 PF11410 Antifungal_pept: Anti 27.5 25 0.00055 19.3 0.4 10 7-16 12-21 (36)
188 KOG4629 Predicted mechanosensi 27.2 1.2E+02 0.0025 28.4 4.7 60 121-188 404-463 (714)
189 KOG4403 Cell surface glycoprot 27.1 2.6E+02 0.0056 24.5 6.4 68 68-150 63-130 (575)
190 PF05099 TerB: Tellurite resis 26.6 72 0.0016 22.4 2.8 16 64-79 37-52 (140)
191 PF03979 Sigma70_r1_1: Sigma-7 26.1 70 0.0015 20.7 2.4 31 134-167 18-48 (82)
192 PLN02222 phosphoinositide phos 25.5 3.1E+02 0.0067 25.0 6.9 66 72-149 24-90 (581)
193 PF09336 Vps4_C: Vps4 C termin 23.3 1.1E+02 0.0023 18.8 2.7 25 137-162 29-53 (62)
194 TIGR02787 codY_Gpos GTP-sensin 23.3 2E+02 0.0043 23.1 4.8 57 64-140 174-230 (251)
195 PF10281 Ish1: Putative stress 22.9 1.4E+02 0.003 16.1 4.1 12 141-152 7-18 (38)
196 KOG2871 Uncharacterized conser 22.8 88 0.0019 26.8 2.8 31 72-102 308-338 (449)
197 PRK14981 DNA-directed RNA poly 22.5 1.4E+02 0.0031 20.6 3.5 27 139-166 80-106 (112)
198 PLN00138 large subunit ribosom 22.2 2.7E+02 0.0058 19.4 4.8 42 126-168 6-47 (113)
199 PF02885 Glycos_trans_3N: Glyc 22.2 2E+02 0.0042 17.6 3.8 46 113-161 10-55 (66)
200 PRK00819 RNA 2'-phosphotransfe 22.0 2E+02 0.0044 21.8 4.5 37 131-168 27-63 (179)
201 PHA02105 hypothetical protein 21.6 2.1E+02 0.0045 17.5 3.7 47 137-184 4-55 (68)
202 COG1460 Uncharacterized protei 20.8 1.2E+02 0.0026 21.3 2.8 29 139-168 81-109 (114)
203 PF06648 DUF1160: Protein of u 20.7 3.2E+02 0.0069 19.4 5.2 45 118-166 34-79 (122)
204 TIGR00135 gatC glutamyl-tRNA(G 20.5 1.8E+02 0.0039 19.1 3.6 25 138-163 1-25 (93)
205 PF09107 SelB-wing_3: Elongati 20.2 1.7E+02 0.0037 17.1 3.0 14 86-99 7-20 (50)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.87 E-value=4.8e-21 Score=141.14 Aligned_cols=123 Identities=28% Similarity=0.471 Sum_probs=107.2
Q ss_pred ccCCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHH------HHHHHHHHhhh------------------hcCCCc
Q 042432 64 DKNIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEEL------AGLEEKIDGLF------------------EEGEPS 119 (190)
Q Consensus 64 ~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l------~e~~~~~~~~~------------------~~~~~~ 119 (190)
..+++.+++++++++|..+|+|++|.|+..||..+++.+ +++.++++..- ......
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~~~~ 90 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRGDK 90 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhccCCc
Confidence 578899999999999999999999999999999999877 34444442221 124456
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
.++++.||+.||+|++|+|+.+||..+++.+|... ++++++++++.+|.|+||.|+|++|.+.+...
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~-~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~ 157 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKSLGERL-SDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDS 157 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccC-CHHHHHHHHHhcCCCCCceEeHHHHHHHHhcc
Confidence 89999999999999999999999999999999998 99999999999999999999999999987653
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.83 E-value=1.3e-19 Score=134.20 Aligned_cols=117 Identities=38% Similarity=0.573 Sum_probs=87.4
Q ss_pred ccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHH------HHHHHHH--------------------HhhhhcCC---CcH
Q 042432 70 KEPEAAESAINAEDSGREKMMTVEEVRMTMEEL------AGLEEKI--------------------DGLFEEGE---PSL 120 (190)
Q Consensus 70 ~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l------~e~~~~~--------------------~~~~~~~~---~~~ 120 (190)
.+..+++++|..||+|++|.|+..|+..+++.+ .++..++ ........ ...
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~ 84 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASS 84 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccH
Confidence 344555666666666666666666666666555 2222222 22121111 135
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 121 EEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 121 ~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
+.+++||+.||+|++|+|+.+||++++..+|.+. +.+++..+++.+|.|+||.|+|+||++++...
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~-~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSLGEKL-TDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcC-CHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 6999999999999999999999999999999998 99999999999999999999999999998753
No 3
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=2.2e-17 Score=119.81 Aligned_cols=122 Identities=25% Similarity=0.415 Sum_probs=107.3
Q ss_pred ccCCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHH------HHHHHHH--------------------HhhhhcCC
Q 042432 64 DKNIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEEL------AGLEEKI--------------------DGLFEEGE 117 (190)
Q Consensus 64 ~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l------~e~~~~~--------------------~~~~~~~~ 117 (190)
...++..+.+.++.+|..||++++|.|+++||..+++.+ .++..++ +..+....
T Consensus 24 ~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d 103 (172)
T KOG0028|consen 24 KSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD 103 (172)
T ss_pred CccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC
Confidence 566777888999999999999999999999999999888 3444444 44444444
Q ss_pred CcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 118 PSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 118 ~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
+.++++.+|+.+|.+++|.|+..+|+.+.+.+|.++ +++++.+++..+|.++||-|+-+||...|++.
T Consensus 104 -t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenl-tD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 104 -TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENL-TDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred -cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccc-cHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 788999999999999999999999999999999998 99999999999999999999999999998753
No 4
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.71 E-value=4.4e-16 Score=112.37 Aligned_cols=119 Identities=23% Similarity=0.343 Sum_probs=106.0
Q ss_pred cCCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHH------HHHHHHHHh----------------hhhcCCCcHHH
Q 042432 65 KNIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEEL------AGLEEKIDG----------------LFEEGEPSLEE 122 (190)
Q Consensus 65 ~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l------~e~~~~~~~----------------~~~~~~~~~~~ 122 (190)
...++.++++++++|..+|.|+||.|+.++++..+..+ +++..|+.. ... ....++.
T Consensus 24 amf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~-gtdpe~~ 102 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLN-GTDPEEV 102 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhc-CCCHHHH
Confidence 34567889999999999999999999999999999998 677777622 222 3456889
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHh
Q 042432 123 VKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLD 185 (190)
Q Consensus 123 l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~ 185 (190)
+..||+.||.+++|.|..+.|+.+|...|.+. +++|++.+|+.+-.+..|.++|.+|+.+++
T Consensus 103 I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~-~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 103 ILNAFKTFDDEGSGKIDEDYLRELLTTMGDRF-TDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHhcCccCCCccCHHHHHHHHHHhcccC-CHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 99999999999999999999999999999998 999999999999999999999999999987
No 5
>PTZ00183 centrin; Provisional
Probab=99.69 E-value=9.3e-16 Score=113.42 Aligned_cols=100 Identities=26% Similarity=0.357 Sum_probs=76.4
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCC
Q 042432 75 AESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAE 154 (190)
Q Consensus 75 ~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~ 154 (190)
+..+|..+|.+++|.|+++||..++.. .. ........++.+|+.+|.+++|.|+.+||..++..+|..+
T Consensus 55 ~~~l~~~~d~~~~g~i~~~eF~~~~~~----------~~-~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l 123 (158)
T PTZ00183 55 IKQMIADVDKDGSGKIDFEEFLDIMTK----------KL-GERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETI 123 (158)
T ss_pred HHHHHHHhCCCCCCcEeHHHHHHHHHH----------Hh-cCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC
Confidence 344444444444444444444444421 11 2234567899999999999999999999999999999887
Q ss_pred CCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 155 ASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 155 ~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
++.++..+|..+|.+++|.|+|++|..++..
T Consensus 124 -~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 124 -TDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred -CHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 9999999999999999999999999999865
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.69 E-value=9.3e-16 Score=112.05 Aligned_cols=101 Identities=34% Similarity=0.525 Sum_probs=80.8
Q ss_pred HHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCC
Q 042432 74 AAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLA 153 (190)
Q Consensus 74 ~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~ 153 (190)
.+..+|..+|.+++|.|+++||..++... . ........+..+|+.+|.+++|+|+.+||..++..++..
T Consensus 48 ~~~~~~~~~d~~~~g~i~~~ef~~~l~~~----------~-~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~ 116 (149)
T PTZ00184 48 ELQDMINEVDADGNGTIDFPEFLTLMARK----------M-KDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEK 116 (149)
T ss_pred HHHHHHHhcCcCCCCcCcHHHHHHHHHHh----------c-cCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCC
Confidence 45566666666666666666666666321 1 122345678999999999999999999999999999887
Q ss_pred CCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 154 EASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 154 ~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
. +.+++..++..+|.+++|.|+|+||+.++..
T Consensus 117 ~-~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 117 L-TDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred C-CHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 7 8999999999999999999999999998764
No 7
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.62 E-value=8.1e-15 Score=111.41 Aligned_cols=101 Identities=26% Similarity=0.462 Sum_probs=81.6
Q ss_pred HHHHHhHHcCCCCCc-ccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCC-
Q 042432 75 AESAINAEDSGREKM-MTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSL- 152 (190)
Q Consensus 75 ~~~~F~~~D~d~~G~-I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~- 152 (190)
..++++.+|.+++|. |++++|.+.+. ++.......++++-||+.||.+++|+|+++|+..++..+-.
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls-----------~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~ 136 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLS-----------VFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGE 136 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHh-----------hhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHcc
Confidence 456788888888887 88888888884 34445455679999999999999999999999999987533
Q ss_pred CCCC--HHH----HHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 153 AEAS--EAE----CTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 153 ~~~~--~~e----~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
.. + ++. ++.+|.++|.|+||+|+|+||.+++.+.
T Consensus 137 ~~-~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 137 ND-DMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred CC-cchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 32 3 333 6788999999999999999999998764
No 8
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.60 E-value=2.7e-14 Score=101.54 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=97.8
Q ss_pred CcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHH----------------------------HHHHHHHHhhhhc-CCC
Q 042432 68 VNKEPEAAESAINAEDSGREKMMTVEEVRMTMEEL----------------------------AGLEEKIDGLFEE-GEP 118 (190)
Q Consensus 68 ~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l----------------------------~e~~~~~~~~~~~-~~~ 118 (190)
+.++..+++++|..||..+||.|++.+...+++.+ ++|..++..+-.+ ...
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~ 85 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQG 85 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccC
Confidence 45666889999999999999999999999999988 2334444444333 334
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHh
Q 042432 119 SLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLD 185 (190)
Q Consensus 119 ~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~ 185 (190)
..+..-+-.+.||+.++|.|...||+++|..+|.++ +++|+..+++... |.+|.|+|+.|++.+.
T Consensus 86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl-~eeEVe~Llag~e-D~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKL-TEEEVEELLAGQE-DSNGCINYEAFVKHIM 150 (152)
T ss_pred cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhc-cHHHHHHHHcccc-ccCCcCcHHHHHHHHh
Confidence 678888999999999999999999999999999998 9999999988774 7789999999998764
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.52 E-value=2.3e-13 Score=103.85 Aligned_cols=102 Identities=23% Similarity=0.316 Sum_probs=91.1
Q ss_pred CCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHH
Q 042432 66 NIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRN 145 (190)
Q Consensus 66 ~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~ 145 (190)
.-+.-.++.++-+...||.+.+|+|.+.||..++. ....|+++|+.||.|++|.|+..||+.
T Consensus 87 ~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~------------------~i~~Wr~vF~~~D~D~SG~I~~sEL~~ 148 (221)
T KOG0037|consen 87 TWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWK------------------YINQWRNVFRTYDRDRSGTIDSSELRQ 148 (221)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH------------------HHHHHHHHHHhcccCCCCcccHHHHHH
Confidence 34455667788899999999999999999999994 346899999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 146 VLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 146 ~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
+|..+|+.+ +++-.+.+++.+|.-+.|.|.|++|+.+...
T Consensus 149 Al~~~Gy~L-spq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 149 ALTQLGYRL-SPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHcCcCC-CHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 999999998 9999999999999877899999999987653
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.49 E-value=2.9e-13 Score=103.14 Aligned_cols=105 Identities=21% Similarity=0.351 Sum_probs=83.3
Q ss_pred cccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q 042432 69 NKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLC 148 (190)
Q Consensus 69 ~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~ 148 (190)
.....-...+|+.+|.|++|.|++.||..++..+ .+....+.++-+|++||.|++|+|+++|+..++.
T Consensus 60 gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~------------~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~ 127 (193)
T KOG0044|consen 60 GDASKYAELVFRTFDKNKDGTIDFLEFICALSLT------------SRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQ 127 (193)
T ss_pred CCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH------------cCCcHHHHhhhhheeecCCCCceEcHHHHHHHHH
Confidence 3334457779999999999999999999999543 2344567888889999999999999999988876
Q ss_pred h----CCC-----CCCC-HHHHHHHHHhcCCCCCCceeHHHHHHHHh
Q 042432 149 G----LSL-----AEAS-EAECTNMITSFDDDKDGRIDFCEFVKLLD 185 (190)
Q Consensus 149 ~----~~~-----~~~~-~~e~~~~~~~~D~d~dG~I~~~EF~~~l~ 185 (190)
. .+. ...+ .+.+..+|+.+|.|+||.|+++||.....
T Consensus 128 ~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 128 AIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 4 232 1112 33488999999999999999999998654
No 11
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.45 E-value=3.9e-13 Score=85.48 Aligned_cols=62 Identities=42% Similarity=0.704 Sum_probs=54.6
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHH----HHHHHHhcCCCCCCceeHHHHHHHH
Q 042432 122 EVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAE----CTNMITSFDDDKDGRIDFCEFVKLL 184 (190)
Q Consensus 122 ~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e----~~~~~~~~D~d~dG~I~~~EF~~~l 184 (190)
+++++|+.+|+|++|+|+.+||..++..++... ++.+ +..+|+.+|.|+||.|+|+||.+++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDM-SDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHS-THHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478999999999999999999999999998764 4444 5666999999999999999999875
No 12
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.44 E-value=3.8e-13 Score=90.63 Aligned_cols=67 Identities=19% Similarity=0.314 Sum_probs=61.4
Q ss_pred HHHHHHHHhhhCC-CCCCcccHHHHHHHHHh-CCCCCCCH-HHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 120 LEEVKAAFALFDK-NEDGFIDASELRNVLCG-LSLAEASE-AECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 120 ~~~l~~~F~~~D~-~~~G~I~~~El~~~l~~-~~~~~~~~-~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
...++.+|+.||+ +++|+|+.+||+.+++. +|..+ ++ ++++++++.+|.|+||+|+|+||+.++...
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~l-s~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLL-KDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhc-cCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4578999999999 99999999999999998 88766 77 899999999999999999999999998753
No 13
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.35 E-value=4.6e-12 Score=85.28 Aligned_cols=66 Identities=21% Similarity=0.433 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhC-CCCCC-cccHHHHHHHHHh-----CCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 120 LEEVKAAFALFD-KNEDG-FIDASELRNVLCG-----LSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 120 ~~~l~~~F~~~D-~~~~G-~I~~~El~~~l~~-----~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
...++++|+.|| .+|+| +|+.+||+.+|+. +|... ++++++++++.+|.|+||+|+|+||+.++..
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~-~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIK-EQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCC-CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 457899999998 79999 5999999999999 88776 8999999999999999999999999998864
No 14
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.34 E-value=1.4e-11 Score=101.88 Aligned_cols=104 Identities=23% Similarity=0.288 Sum_probs=94.2
Q ss_pred ccCCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHH
Q 042432 64 DKNIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASEL 143 (190)
Q Consensus 64 ~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El 143 (190)
..++.+...+....+|..+|.|.||.++++||++.+. ..+.++...|...|.+.||.|+..|+
T Consensus 42 ~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~-----------------~~E~~l~~~F~~iD~~hdG~i~~~Ei 104 (463)
T KOG0036|consen 42 KLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD-----------------NKELELYRIFQSIDLEHDGKIDPNEI 104 (463)
T ss_pred hcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH-----------------HhHHHHHHHHhhhccccCCccCHHHH
Confidence 3344466778889999999999999999999999993 45678999999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHh
Q 042432 144 RNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLD 185 (190)
Q Consensus 144 ~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~ 185 (190)
...++.+|.++ +++++.++++.+|+++++.|+++||..++.
T Consensus 105 ~~~l~~~gi~l-~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 105 WRYLKDLGIQL-SDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHHHhCCcc-CHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 99999999998 999999999999999999999999998764
No 15
>PLN02964 phosphatidylserine decarboxylase
Probab=99.33 E-value=1.3e-11 Score=109.15 Aligned_cols=107 Identities=20% Similarity=0.271 Sum_probs=89.7
Q ss_pred cCCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHH---HHHHHHhhhCCCCCCcccHH
Q 042432 65 KNIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLE---EVKAAFALFDKNEDGFIDAS 141 (190)
Q Consensus 65 ~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~---~l~~~F~~~D~~~~G~I~~~ 141 (190)
..++.++.++++++|..+|+|++|.+ +..+++.+ .....+.. .++.+|+.+|.+++|.|+.+
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrsl-----------G~~~pte~e~~fi~~mf~~~D~DgdG~Idfd 199 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSC-----------SIEDPVETERSFARRILAIVDYDEDGQLSFS 199 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHh-----------CCCCCCHHHHHHHHHHHHHhCCCCCCeEcHH
Confidence 46778889999999999999999997 55555433 10122333 38999999999999999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 142 ELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 142 El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
||..++..++... +++++..+|+.+|.|++|.|+++||..++...
T Consensus 200 EFl~lL~~lg~~~-seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 200 EFSDLIKAFGNLV-AANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHHhccCC-CHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 9999999888765 88899999999999999999999999998763
No 16
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.32 E-value=1.2e-11 Score=88.95 Aligned_cols=100 Identities=26% Similarity=0.433 Sum_probs=84.5
Q ss_pred HHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCC
Q 042432 76 ESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEA 155 (190)
Q Consensus 76 ~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~ 155 (190)
+++...|..||.|.+++++|...++ ++++.....-.+.-||+.||-|++++|..++|...+..+....+
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfS-----------V~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eL 142 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFS-----------VFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDEL 142 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHH-----------HHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccC
Confidence 4566788899999999999999884 34444455667888999999999999999999999998765555
Q ss_pred CHHH----HHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 156 SEAE----CTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 156 ~~~e----~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
+++| ++++++++|.||||++++.||..++.+
T Consensus 143 s~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 143 SDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 7777 578889999999999999999998865
No 17
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.25 E-value=2.9e-11 Score=82.44 Aligned_cols=66 Identities=20% Similarity=0.456 Sum_probs=58.9
Q ss_pred HHHHHHHHhhhCC-CC-CCcccHHHHHHHHHh-----CCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 120 LEEVKAAFALFDK-NE-DGFIDASELRNVLCG-----LSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 120 ~~~l~~~F~~~D~-~~-~G~I~~~El~~~l~~-----~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
...++.+|..||. ++ +|+|+.+||+.+++. +|..+ +++++..+++.+|.+++|.|+|+||+.++..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~-s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQK-DPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccc-cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4678999999997 97 699999999999986 46665 8899999999999999999999999988864
No 18
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.25 E-value=3.6e-11 Score=81.84 Aligned_cols=67 Identities=25% Similarity=0.437 Sum_probs=57.6
Q ss_pred HHHHHHHHhhhC-CCCCC-cccHHHHHHHHHh-C----CCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 120 LEEVKAAFALFD-KNEDG-FIDASELRNVLCG-L----SLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 120 ~~~l~~~F~~~D-~~~~G-~I~~~El~~~l~~-~----~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
...+..+|..|| +|++| +|+.+||+.++.. + +... ++.++.+++..+|.|+||.|+|+||+.++.+.
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~-~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQK-DPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhccccc-CHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 357788999999 78998 5999999999976 2 3333 77899999999999999999999999998764
No 19
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.24 E-value=4.5e-11 Score=81.12 Aligned_cols=67 Identities=27% Similarity=0.513 Sum_probs=58.9
Q ss_pred HHHHHHHHhhhC-CCCCCc-ccHHHHHHHHHh-CC----CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 120 LEEVKAAFALFD-KNEDGF-IDASELRNVLCG-LS----LAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 120 ~~~l~~~F~~~D-~~~~G~-I~~~El~~~l~~-~~----~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
.+.++++|+.|| .+++|+ |+.+||+.+++. +| ..+ ++++++.++..+|.+++|.|+|+||+.++.+.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~-s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQK-DADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 467899999997 999995 999999999985 44 344 78899999999999999999999999988764
No 20
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.24 E-value=4.2e-11 Score=80.63 Aligned_cols=67 Identities=19% Similarity=0.388 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhCC-CC-CCcccHHHHHHHHH---hCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 120 LEEVKAAFALFDK-NE-DGFIDASELRNVLC---GLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 120 ~~~l~~~F~~~D~-~~-~G~I~~~El~~~l~---~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
...+-+.|..||. +| +|+|+.+||+++++ .+|.+. +++++.++++.+|.|++|+|+|+||+.++.+.
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~-t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKL-QDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3467789999997 77 89999999999996 368887 99999999999999999999999999998764
No 21
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.22 E-value=6.4e-11 Score=87.58 Aligned_cols=69 Identities=42% Similarity=0.620 Sum_probs=65.1
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhhh
Q 042432 119 SLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRSF 188 (190)
Q Consensus 119 ~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~~ 188 (190)
....++.+|+.||++++|+|+.+||..+++.+|..+ ++.++..++..+|.+++|.|+++||+.++.+..
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~-t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNP-TEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhh
Confidence 356899999999999999999999999999999997 999999999999999999999999999998764
No 22
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.22 E-value=3.1e-10 Score=86.79 Aligned_cols=122 Identities=15% Similarity=0.226 Sum_probs=98.5
Q ss_pred HHHHHHHHhhhcchhhHH--HHHHhhhhHhHHHHHhhhccCCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHH
Q 042432 28 LNCLIILRDISSSFHCVF--RVFSGIFSNIKKKIQLCADKNIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGL 105 (190)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~ 105 (190)
-.|++|+..++.+..+.+ .+|..+++.++ ..+.+|+.||.|++|.|+..||+.++..+
T Consensus 94 ~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~-----------------~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~--- 153 (221)
T KOG0037|consen 94 ETCRLMISMFDRDNSGTIGFKEFKALWKYIN-----------------QWRNVFRTYDRDRSGTIDSSELRQALTQL--- 153 (221)
T ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-----------------HHHHHHHhcccCCCCcccHHHHHHHHHHc---
Confidence 356778888888777776 78888888888 34558999999999999999999999766
Q ss_pred HHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCC--ceeHHHHHHH
Q 042432 106 EEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDG--RIDFCEFVKL 183 (190)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG--~I~~~EF~~~ 183 (190)
.-.-+..-+...++.||..++|.|..++|.+++-. -..+.+.|+..|.+.+| .|+|++|+.+
T Consensus 154 ---------Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~-------L~~lt~~Fr~~D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 154 ---------GYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV-------LQRLTEAFRRRDTAQQGSITISYDDFLQM 217 (221)
T ss_pred ---------CcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH-------HHHHHHHHHHhccccceeEEEeHHHHHHH
Confidence 22234566777889999888999999999998853 23466789999999888 5899999977
Q ss_pred Hh
Q 042432 184 LD 185 (190)
Q Consensus 184 l~ 185 (190)
..
T Consensus 218 t~ 219 (221)
T KOG0037|consen 218 TM 219 (221)
T ss_pred hh
Confidence 53
No 23
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.20 E-value=6.1e-11 Score=72.37 Aligned_cols=53 Identities=38% Similarity=0.641 Sum_probs=49.5
Q ss_pred CCCcccHHHHHHHHHhCCCC-CCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 134 EDGFIDASELRNVLCGLSLA-EASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 134 ~~G~I~~~El~~~l~~~~~~-~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
++|.|+.++|+.++..+|.+ + +++++..+|..+|.+++|.|+|+||+.++.++
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~-s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~~ 54 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDL-SEEEVDRLFREFDTDGDGYISFDEFISMMQRR 54 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSS-CHHHHHHHHHHHTTSSSSSEEHHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCC-CHHHHHHHHHhcccCCCCCCCHHHHHHHHHhC
Confidence 47999999999999888988 7 99999999999999999999999999998763
No 24
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.16 E-value=7.2e-11 Score=74.92 Aligned_cols=64 Identities=27% Similarity=0.362 Sum_probs=52.0
Q ss_pred HHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhc--CCCcHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 042432 74 AAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEE--GEPSLEEVKAAFALFDKNEDGFIDASELRNVL 147 (190)
Q Consensus 74 ~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~--~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l 147 (190)
+++++|+.+|+|++|.|+.+||..++..+ ... .......+..+|+.+|+|++|.|+.+||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~----------~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL----------GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT----------TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh----------cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 36789999999999999999999999654 110 12234577778999999999999999998864
No 25
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.14 E-value=2.2e-10 Score=72.57 Aligned_cols=60 Identities=28% Similarity=0.401 Sum_probs=55.0
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 124 KAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 124 ~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
+.+|+.+|++++|.|+.+|++.++...|. +.+++..++..+|.+++|.|+|+||+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~---~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL---PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC---CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 57899999999999999999999998874 6788999999999999999999999998764
No 26
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.14 E-value=1.1e-10 Score=78.41 Aligned_cols=70 Identities=21% Similarity=0.420 Sum_probs=60.4
Q ss_pred cHHHHHHHHhhhCC--CCCCcccHHHHHHHHHh-CCCCC---CCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhhh
Q 042432 119 SLEEVKAAFALFDK--NEDGFIDASELRNVLCG-LSLAE---ASEAECTNMITSFDDDKDGRIDFCEFVKLLDRSF 188 (190)
Q Consensus 119 ~~~~l~~~F~~~D~--~~~G~I~~~El~~~l~~-~~~~~---~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~~ 188 (190)
....++.+|..||. +++|.|+.+||..+++. +|.+. .+..++..++..+|.+++|.|+|++|+.++....
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 45678999999999 89999999999999975 45332 1588999999999999999999999999987654
No 27
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.12 E-value=4.1e-10 Score=75.95 Aligned_cols=68 Identities=22% Similarity=0.363 Sum_probs=57.9
Q ss_pred cHHHHHHHHhh-hCCCCCC-cccHHHHHHHHHhC-----CCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 119 SLEEVKAAFAL-FDKNEDG-FIDASELRNVLCGL-----SLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 119 ~~~~l~~~F~~-~D~~~~G-~I~~~El~~~l~~~-----~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
....+..+|+. +|++++| +|+.+||+.++... +... ++.++.++++.+|.|+||.|+|+||+.++...
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~-~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQK-DPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCC-CHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34678899999 7788876 99999999999875 3333 67899999999999999999999999988753
No 28
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.12 E-value=3.9e-10 Score=77.08 Aligned_cols=65 Identities=22% Similarity=0.302 Sum_probs=59.2
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 119 SLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 119 ~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
....++.+|..+|.+++|.|+.+|++.+++..+ . +++++..++..+|.+++|.|+|+||+.++..
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~-~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--L-PQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--C-CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 456889999999999999999999999999876 3 7789999999999999999999999998764
No 29
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.08 E-value=6.4e-10 Score=68.35 Aligned_cols=61 Identities=48% Similarity=0.736 Sum_probs=57.0
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 042432 123 VKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLL 184 (190)
Q Consensus 123 l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l 184 (190)
+..+|..+|.+++|.|+.+|+..+++.++.+. +.+++..++..+|.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGL-SEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC-CHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56789999999999999999999999999887 88899999999999999999999999876
No 30
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.08 E-value=1.6e-09 Score=90.58 Aligned_cols=107 Identities=22% Similarity=0.362 Sum_probs=86.8
Q ss_pred HHHHHHhHHcCCCCCcccHHHHHHHHHHH--------------------------------------HHH-HHHHHhhhh
Q 042432 74 AAESAINAEDSGREKMMTVEEVRMTMEEL--------------------------------------AGL-EEKIDGLFE 114 (190)
Q Consensus 74 ~~~~~F~~~D~d~~G~I~~~E~~~~l~~l--------------------------------------~e~-~~~~~~~~~ 114 (190)
++...|+.+|.+++|.|+......++..+ ++. ..++..+++
T Consensus 465 dL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr 544 (631)
T KOG0377|consen 465 DLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYR 544 (631)
T ss_pred HHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHh
Confidence 47778999999999999999999999766 110 112233333
Q ss_pred cCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhC----CCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHh
Q 042432 115 EGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGL----SLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLD 185 (190)
Q Consensus 115 ~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~----~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~ 185 (190)
....+..+|+.+|.|++|.|+.+||+.+++-+ ..+. +++++.++-+.+|.|+||+|++.||+..+.
T Consensus 545 ----~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i-~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 545 ----NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAI-SDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred ----chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCc-CHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 34578889999999999999999999998754 3455 889999999999999999999999998764
No 31
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.05 E-value=9.7e-10 Score=81.29 Aligned_cols=67 Identities=36% Similarity=0.669 Sum_probs=62.8
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhhh
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRSF 188 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~~ 188 (190)
..+++++|..+|++++|.|+.+||..+++.+|..+ ++.++.+++..+|. +.|.|+|.+|+.+|....
T Consensus 19 i~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~-s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 19 IQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNP-SEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCC-cHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 47899999999999999999999999999999998 99999999999998 889999999999998765
No 32
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=9.6e-10 Score=88.58 Aligned_cols=99 Identities=23% Similarity=0.318 Sum_probs=77.4
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCC---cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCC
Q 042432 75 AESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEP---SLEEVKAAFALFDKNEDGFIDASELRNVLCGLS 151 (190)
Q Consensus 75 ~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~---~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~ 151 (190)
+++...-.|+|+||.|+++||..-+... ..+.+. ...+-...|..+|+|++|+++.+|++.++..-+
T Consensus 202 i~Etl~d~Dkn~DG~I~~eEfigd~~~~----------~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~ 271 (325)
T KOG4223|consen 202 IAETLEDIDKNGDGKISLEEFIGDLYSH----------EGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSE 271 (325)
T ss_pred HHHHHhhcccCCCCceeHHHHHhHHhhc----------cCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCC
Confidence 6777888899999999999998888322 100000 112233566788999999999999999998888
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 042432 152 LAEASEAECTNMITSFDDDKDGRIDFCEFVKLL 184 (190)
Q Consensus 152 ~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l 184 (190)
... ...+...++...|.|+||++|++|.+.-.
T Consensus 272 ~d~-A~~EA~hL~~eaD~dkD~kLs~eEIl~~~ 303 (325)
T KOG4223|consen 272 QDH-AKAEARHLLHEADEDKDGKLSKEEILEHY 303 (325)
T ss_pred ccH-HHHHHHHHhhhhccCccccccHHHHhhCc
Confidence 776 78899999999999999999999987643
No 33
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.00 E-value=5.2e-09 Score=79.92 Aligned_cols=109 Identities=23% Similarity=0.246 Sum_probs=82.9
Q ss_pred CcccHHHHHHHHhHHcCC-CCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHH
Q 042432 68 VNKEPEAAESAINAEDSG-REKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNV 146 (190)
Q Consensus 68 ~~~~~~~~~~~F~~~D~d-~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~ 146 (190)
+.-...++++.++.|=.+ .+|.++.++|+.++..+ +. ..........+|+.||.|++|.|+..||..+
T Consensus 21 t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~----------fp-~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~a 89 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASF----------FP-DGDASKYAELVFRTFDKNKDGTIDFLEFICA 89 (193)
T ss_pred cCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHH----------CC-CCCHHHHHHHHHHHhcccCCCCcCHHHHHHH
Confidence 333344444445544434 58999999999999654 44 4456678889999999999999999999988
Q ss_pred HHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhhh
Q 042432 147 LCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRSF 188 (190)
Q Consensus 147 l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~~ 188 (190)
+..+.-.. .++-++-.|+.+|.|++|.|+++|++.++..-|
T Consensus 90 ls~~~rGt-~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~ 130 (193)
T KOG0044|consen 90 LSLTSRGT-LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIY 130 (193)
T ss_pred HHHHcCCc-HHHHhhhhheeecCCCCceEcHHHHHHHHHHHH
Confidence 87665443 344566779999999999999999999887543
No 34
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=7e-09 Score=83.66 Aligned_cols=117 Identities=16% Similarity=0.213 Sum_probs=87.9
Q ss_pred HHHHHHHHhHHcCCCCCcccHHHHHHHHHHH------HHHHHHH-----------------Hhhhhc---------CC--
Q 042432 72 PEAAESAINAEDSGREKMMTVEEVRMTMEEL------AGLEEKI-----------------DGLFEE---------GE-- 117 (190)
Q Consensus 72 ~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l------~e~~~~~-----------------~~~~~~---------~~-- 117 (190)
..++..++..+|.+++|.|+..|++.++... .+..+-+ ...+.. ..
T Consensus 76 ~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~ 155 (325)
T KOG4223|consen 76 QERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDN 155 (325)
T ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhc
Confidence 4558888999999999999999999999766 1111111 111110 00
Q ss_pred ----CcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhhh
Q 042432 118 ----PSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRSF 188 (190)
Q Consensus 118 ----~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~~ 188 (190)
.-..+-+..|+..|.|++|.++++||..+|.+-..+.|.+-.+.+-+...|+|+||+|+++||+.-|....
T Consensus 156 ~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 156 EEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 01346678899999999999999999999987776655556688899999999999999999998776543
No 35
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.99 E-value=2.2e-09 Score=75.73 Aligned_cols=63 Identities=29% Similarity=0.327 Sum_probs=54.3
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 119 SLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 119 ~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
....+..+|..+|.|++|+|+.+||..+. ++ . .+..+..+|..+|.|+||.|+++||..++.+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~--~-~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD--P-NEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc--c-hHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 34678899999999999999999999876 22 2 4667889999999999999999999999843
No 36
>PF14658 EF-hand_9: EF-hand domain
Probab=98.93 E-value=4.4e-09 Score=66.13 Aligned_cols=64 Identities=23% Similarity=0.447 Sum_probs=58.4
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCC-CceeHHHHHHHHhhhh
Q 042432 125 AAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKD-GRIDFCEFVKLLDRSF 188 (190)
Q Consensus 125 ~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~d-G~I~~~EF~~~l~~~~ 188 (190)
.+|..||.++.|.|...++..+|+.++.+.+++.+++.+...+|+++. |.|+++.|+..|+.++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~wi 66 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDWI 66 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHhC
Confidence 379999999999999999999999999833389999999999999987 9999999999998764
No 37
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.92 E-value=1.2e-08 Score=77.80 Aligned_cols=106 Identities=21% Similarity=0.165 Sum_probs=89.9
Q ss_pred CCcccHHHHHHHHhHHcCC-CCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCc-ccHHHHH
Q 042432 67 IVNKEPEAAESAINAEDSG-REKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGF-IDASELR 144 (190)
Q Consensus 67 ~~~~~~~~~~~~F~~~D~d-~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~-I~~~El~ 144 (190)
.+..++..+...|..+|.+ ++|.|+.+||..+.... .......++..||.+++|. |+.++|-
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~----------------~Np~~~rI~~~f~~~~~~~~v~F~~Fv 90 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELA----------------LNPLADRIIDRFDTDGNGDPVDFEEFV 90 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHh----------------cCcHHHHHHHHHhccCCCCccCHHHHH
Confidence 6778899999999999999 99999999999999311 1225567888999998888 9999999
Q ss_pred HHHHhCCCCCCCHH-HHHHHHHhcCCCCCCceeHHHHHHHHhhhhC
Q 042432 145 NVLCGLSLAEASEA-ECTNMITSFDDDKDGRIDFCEFVKLLDRSFS 189 (190)
Q Consensus 145 ~~l~~~~~~~~~~~-e~~~~~~~~D~d~dG~I~~~EF~~~l~~~~~ 189 (190)
+.+..+..+. ..+ -++-.|+.+|.+++|.|+.+|+..++..-++
T Consensus 91 ~~ls~f~~~~-~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 91 RLLSVFSPKA-SKREKLRFAFRVYDLDGDGFISREELKQILRMMVG 135 (187)
T ss_pred HHHhhhcCCc-cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHc
Confidence 9999887775 444 5888999999999999999999999887654
No 38
>PTZ00184 calmodulin; Provisional
Probab=98.90 E-value=9.5e-09 Score=74.74 Aligned_cols=66 Identities=45% Similarity=0.715 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
...++..|..+|.+++|.|+.+||..++..++..+ +.+++..++..+|.+++|.|+|++|+.++..
T Consensus 10 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCC-CHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 34555666666666666666666666666666554 5556666666666666666666666665543
No 39
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.89 E-value=7e-09 Score=69.80 Aligned_cols=68 Identities=16% Similarity=0.310 Sum_probs=57.7
Q ss_pred HHHHHHHHhhhCCC--CCCcccHHHHHHHHH-hCCCCCCC----HHHHHHHHHhcCCCCCCceeHHHHHHHHhhhh
Q 042432 120 LEEVKAAFALFDKN--EDGFIDASELRNVLC-GLSLAEAS----EAECTNMITSFDDDKDGRIDFCEFVKLLDRSF 188 (190)
Q Consensus 120 ~~~l~~~F~~~D~~--~~G~I~~~El~~~l~-~~~~~~~~----~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~~ 188 (190)
...+...|..|+.. ++|+|+.+||+.++. .++..+ + +++++.+|..+|.+++|.|+|+||+.++.+..
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~-t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFL-KKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhh-ccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 45677889999865 479999999999996 555544 5 88999999999999999999999999987653
No 40
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.88 E-value=1.1e-08 Score=69.83 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=60.2
Q ss_pred CCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHH
Q 042432 67 IVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNV 146 (190)
Q Consensus 67 ~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~ 146 (190)
++..+...++++|..+|+|++|.|+.+|++.+++.. ......+..+|+.+|.+++|.|+.+||..+
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~--------------~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~ 69 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS--------------GLPQTLLAKIWNLADIDNDGELDKDEFALA 69 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc--------------CCCHHHHHHHHHHhcCCCCCCcCHHHHHHH
Confidence 456778889999999999999999999999999532 245678999999999999999999999998
Q ss_pred HHh
Q 042432 147 LCG 149 (190)
Q Consensus 147 l~~ 149 (190)
+..
T Consensus 70 ~~~ 72 (96)
T smart00027 70 MHL 72 (96)
T ss_pred HHH
Confidence 764
No 41
>PTZ00183 centrin; Provisional
Probab=98.88 E-value=1.4e-08 Score=74.77 Aligned_cols=66 Identities=27% Similarity=0.376 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHh
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLD 185 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~ 185 (190)
...+..+|..+|.+++|.|+.+||..++..........+.+..+|+.+|.+++|.|+++||..++.
T Consensus 52 ~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~ 117 (158)
T PTZ00183 52 KEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAK 117 (158)
T ss_pred HHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 344555555555555555555555554433211111344455555555555555555555555544
No 42
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.84 E-value=1.5e-08 Score=68.17 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=56.5
Q ss_pred cHHHHHHHHhHHcC-CCCCcccHHHHHHHHHH-HHHHHHHHHhhhhcCCCcH-HHHHHHHhhhCCCCCCcccHHHHHHHH
Q 042432 71 EPEAAESAINAEDS-GREKMMTVEEVRMTMEE-LAGLEEKIDGLFEEGEPSL-EEVKAAFALFDKNEDGFIDASELRNVL 147 (190)
Q Consensus 71 ~~~~~~~~F~~~D~-d~~G~I~~~E~~~~l~~-l~e~~~~~~~~~~~~~~~~-~~l~~~F~~~D~~~~G~I~~~El~~~l 147 (190)
.+..+.++|+.||+ +++|.|+..||+.++.. + ... -+. ..+...++.+|.|++|.|+.+||...+
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~el-----------g~~-ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~ 73 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQL-----------PHL-LKDVEGLEEKMKNLDVNQDSKLSFEEFWELI 73 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHh-----------hhh-ccCHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 35678899999999 99999999999999965 4 111 122 689999999999999999999999887
Q ss_pred HhC
Q 042432 148 CGL 150 (190)
Q Consensus 148 ~~~ 150 (190)
..+
T Consensus 74 ~~l 76 (89)
T cd05022 74 GEL 76 (89)
T ss_pred HHH
Confidence 653
No 43
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.82 E-value=3.8e-08 Score=69.50 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=55.2
Q ss_pred CCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHH
Q 042432 67 IVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNV 146 (190)
Q Consensus 67 ~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~ 146 (190)
+.......+..+|..+|.|+||.|+.+|+..+. + ......+...|+.+|.|++|.||.+|+..+
T Consensus 42 ~~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--------------~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~c 105 (116)
T cd00252 42 LYPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L--------------DPNEHCIKPFFESCDLDKDGSISLDEWCYC 105 (116)
T ss_pred hhHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--------------cchHHHHHHHHHHHCCCCCCCCCHHHHHHH
Confidence 334556778999999999999999999999775 1 234567788999999999999999999999
Q ss_pred H
Q 042432 147 L 147 (190)
Q Consensus 147 l 147 (190)
+
T Consensus 106 l 106 (116)
T cd00252 106 F 106 (116)
T ss_pred H
Confidence 8
No 44
>PLN02964 phosphatidylserine decarboxylase
Probab=98.82 E-value=4.5e-08 Score=86.90 Aligned_cols=103 Identities=14% Similarity=0.091 Sum_probs=74.3
Q ss_pred HhhhcchhhHHHHHHhhhhHhHHHHHh---hhcc---CCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHH
Q 042432 35 RDISSSFHCVFRVFSGIFSNIKKKIQL---CADK---NIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEK 108 (190)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~ 108 (190)
+++...+...+...|.+++..+....+ .... ..+..+...++++|..+|.|++|.|+++||..++..+
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~iLg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l------ 208 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKVVGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF------ 208 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh------
Confidence 455555556666667766655311000 0022 2233333458999999999999999999999999543
Q ss_pred HHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHh
Q 042432 109 IDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCG 149 (190)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~ 149 (190)
......++++.+|+.+|+|++|+|+.+||..++..
T Consensus 209 ------g~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 209 ------GNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred ------ccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 23356788999999999999999999999999988
No 45
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=1.7e-08 Score=73.75 Aligned_cols=69 Identities=28% Similarity=0.540 Sum_probs=62.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhhhC
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRSFS 189 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~~~ 189 (190)
...++.+|..||.+++|+|+.+||+-+++.+|..+ ..+++.+++..+|+++.|+|+|++|...++..++
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~-~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~ 100 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEP-KKEEILKLLADVDKEGSGKITFEDFRRVMTVKLG 100 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCc-chHHHHHHHHhhhhccCceechHHHHHHHHHHHh
Confidence 46889999999999999999999999999999987 8889999999999999999999999999876553
No 46
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.81 E-value=6e-08 Score=80.63 Aligned_cols=101 Identities=26% Similarity=0.395 Sum_probs=86.3
Q ss_pred cccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q 042432 69 NKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLC 148 (190)
Q Consensus 69 ~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~ 148 (190)
.+...+++.+|+.+|.+++|.++..++.+++..+ .............|...|.|.+|.++..||++.+.
T Consensus 10 ~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l-----------~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~ 78 (463)
T KOG0036|consen 10 EERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKL-----------DHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD 78 (463)
T ss_pred HHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhc-----------CCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH
Confidence 3345568899999999999999999999999655 22346678889999999999999999999999997
Q ss_pred hCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 149 GLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 149 ~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
. .+.++-.+|+.+|.++||.|+-+|....+..
T Consensus 79 ~------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~ 110 (463)
T KOG0036|consen 79 N------KELELYRIFQSIDLEHDGKIDPNEIWRYLKD 110 (463)
T ss_pred H------hHHHHHHHHhhhccccCCccCHHHHHHHHHH
Confidence 4 5667889999999999999999998877654
No 47
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.79 E-value=4.2e-08 Score=65.97 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=56.9
Q ss_pred HHHHHHHHhHHc-CCCCC-cccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHh
Q 042432 72 PEAAESAINAED-SGREK-MMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCG 149 (190)
Q Consensus 72 ~~~~~~~F~~~D-~d~~G-~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~ 149 (190)
+..++++|+.|| +|++| .|+.+||+.+|+. |+.++ .....+...+..+++.+|.|++|.|+.+||..++..
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~--~~~~~-----lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINN--ELSHF-----LEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHH--HhHHH-----hcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 567899999998 89999 5999999999964 11100 123346778999999999999999999999888764
No 48
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.77 E-value=4.2e-08 Score=66.66 Aligned_cols=72 Identities=13% Similarity=0.184 Sum_probs=56.5
Q ss_pred HHHHHHHHhHHc-CCCCC-cccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHh
Q 042432 72 PEAAESAINAED-SGREK-MMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCG 149 (190)
Q Consensus 72 ~~~~~~~F~~~D-~d~~G-~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~ 149 (190)
+..+.++|+.|| +|++| +|+.+||+.++... + ...+ ........+.++++.+|.|++|.|+.+||..++..
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~--~----~~~~-~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRE--L----TDFL-SSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHH--h----HHhc-ccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 556888999999 78998 59999999999542 0 0000 12235678999999999999999999999998876
Q ss_pred C
Q 042432 150 L 150 (190)
Q Consensus 150 ~ 150 (190)
+
T Consensus 82 l 82 (93)
T cd05026 82 L 82 (93)
T ss_pred H
Confidence 4
No 49
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.72 E-value=6.3e-08 Score=61.13 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=52.1
Q ss_pred HHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHh
Q 042432 76 ESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCG 149 (190)
Q Consensus 76 ~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~ 149 (190)
+++|..+|+|++|.|+.+|+..++..+ ......+..+|+.+|.+++|.|+.+||..++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~--------------g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS--------------GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc--------------CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 568999999999999999999999543 235678999999999999999999999988754
No 50
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.72 E-value=1.1e-07 Score=64.30 Aligned_cols=71 Identities=20% Similarity=0.311 Sum_probs=56.8
Q ss_pred HHHHHHHHhHHc-CCCCC-cccHHHHHHHHHH-HHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q 042432 72 PEAAESAINAED-SGREK-MMTVEEVRMTMEE-LAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLC 148 (190)
Q Consensus 72 ~~~~~~~F~~~D-~d~~G-~I~~~E~~~~l~~-l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~ 148 (190)
.+.++++|+.|| .+++| .|+..|++.+++. +. .......+...+..+|+.+|.+++|.|+.+||..++.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg--------~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELS--------DFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHH--------HHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 456899999997 99999 5999999999963 20 0011124567899999999999999999999999886
Q ss_pred hC
Q 042432 149 GL 150 (190)
Q Consensus 149 ~~ 150 (190)
.+
T Consensus 80 ~~ 81 (92)
T cd05025 80 AL 81 (92)
T ss_pred HH
Confidence 53
No 51
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.70 E-value=8.5e-08 Score=65.21 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=57.6
Q ss_pred HHHHHHHHhHHcC-CC-CCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHh
Q 042432 72 PEAAESAINAEDS-GR-EKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCG 149 (190)
Q Consensus 72 ~~~~~~~F~~~D~-d~-~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~ 149 (190)
...++++|..||. |+ +|.|+.+|++.++... + .-......+...+..+++.+|.+++|.|+.+||..++..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~------~-g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKE------L-SEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHH------h-HHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4568899999997 97 6999999999999541 0 000012345678999999999999999999999998876
Q ss_pred CCC
Q 042432 150 LSL 152 (190)
Q Consensus 150 ~~~ 152 (190)
.+.
T Consensus 80 ~~~ 82 (94)
T cd05031 80 LSI 82 (94)
T ss_pred HHH
Confidence 543
No 52
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.67 E-value=4.2e-08 Score=82.03 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhhh
Q 042432 151 SLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRSF 188 (190)
Q Consensus 151 ~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~~ 188 (190)
|.++ ++..++-+|..+|.|+||.++++||+.+|+++.
T Consensus 419 GveL-SdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rm 455 (489)
T KOG2643|consen 419 GVEL-SDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRM 455 (489)
T ss_pred Cccc-ccceeeeEEEEEccCCCCcccHHHHHHHHHHHh
Confidence 4554 666667778889999999999999999999875
No 53
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.67 E-value=1.6e-07 Score=57.40 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=52.9
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 042432 75 AESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVL 147 (190)
Q Consensus 75 ~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l 147 (190)
++.+|..+|.+++|.|+.+|+..++..+ ........+..+|+.+|.+++|.|+.++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL------------GEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh------------CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999654 344567788999999999999999999998765
No 54
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.65 E-value=8.8e-08 Score=72.57 Aligned_cols=67 Identities=30% Similarity=0.637 Sum_probs=61.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
.......|+.||.+.||+|+..||+.++..+|.+. +.--++.+++.+|.|.||+|+|-||+-.++.-
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQ-THL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQ-THLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHhCCch-hhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 45677899999999999999999999999999987 88889999999999999999999999877653
No 55
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.60 E-value=2.7e-07 Score=67.18 Aligned_cols=66 Identities=35% Similarity=0.655 Sum_probs=58.0
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhhhC
Q 042432 119 SLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRSFS 189 (190)
Q Consensus 119 ~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~~~ 189 (190)
...++++||..+|.|+||.|+.++|+..+..+|... ++++++.++.++. |.|+|--|+.++.++++
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~-~d~elDaM~~Ea~----gPINft~FLTmfGekL~ 95 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIA-SDEELDAMMKEAP----GPINFTVFLTMFGEKLN 95 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCC-CHHHHHHHHHhCC----CCeeHHHHHHHHHHHhc
Confidence 466899999999999999999999999999999886 9999999998654 67888888888877664
No 56
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.60 E-value=3.1e-07 Score=61.54 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=57.4
Q ss_pred ccHHHHHHHHhHHcC--CCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 042432 70 KEPEAAESAINAEDS--GREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVL 147 (190)
Q Consensus 70 ~~~~~~~~~F~~~D~--d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l 147 (190)
++++.++++|..||+ |++|.|+.+||..++... + ............+..+++.+|.+++|.|+.+||..++
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~------~-g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~ 77 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETE------L-PNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLI 77 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHH------h-hhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHH
Confidence 456778999999999 899999999999999531 0 0000011346789999999999999999999999988
Q ss_pred Hh
Q 042432 148 CG 149 (190)
Q Consensus 148 ~~ 149 (190)
..
T Consensus 78 ~~ 79 (88)
T cd00213 78 GK 79 (88)
T ss_pred HH
Confidence 64
No 57
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.58 E-value=7.3e-08 Score=51.06 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=25.5
Q ss_pred HHHHHHhHHcCCCCCcccHHHHHHHHHH
Q 042432 74 AAESAINAEDSGREKMMTVEEVRMTMEE 101 (190)
Q Consensus 74 ~~~~~F~~~D~d~~G~I~~~E~~~~l~~ 101 (190)
+++++|+.+|+|+||.|+++||+.+++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3678999999999999999999999964
No 58
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.52 E-value=1.5e-07 Score=49.90 Aligned_cols=26 Identities=42% Similarity=0.676 Sum_probs=14.2
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHH
Q 042432 123 VKAAFALFDKNEDGFIDASELRNVLC 148 (190)
Q Consensus 123 l~~~F~~~D~~~~G~I~~~El~~~l~ 148 (190)
++.+|+.+|+|++|+|+.+||..+++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 44555555555555555555555554
No 59
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.45 E-value=1.6e-06 Score=58.27 Aligned_cols=65 Identities=20% Similarity=0.491 Sum_probs=53.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHh-----CCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCG-----LSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~-----~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
...+-.+|..|- .+.|.++..||+..+.. ++... +++.++++|+..|.|+||.|+|.||+.++..
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~-d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQN-DPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCC-CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 346677898887 44679999999999864 23333 6788999999999999999999999998865
No 60
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.44 E-value=1.2e-06 Score=58.90 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=55.9
Q ss_pred HHHHHHHHhHHcC-CC-CCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHh
Q 042432 72 PEAAESAINAEDS-GR-EKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCG 149 (190)
Q Consensus 72 ~~~~~~~F~~~D~-d~-~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~ 149 (190)
+..+-.+|..||. |+ +|.|+.+||+.++... .--....+.+.+.++++.+|.|++|.|+.+||..++..
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~---------~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKE---------LTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHH---------HhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 4557789999998 77 8999999999999421 00123356789999999999999999999999888764
Q ss_pred C
Q 042432 150 L 150 (190)
Q Consensus 150 ~ 150 (190)
+
T Consensus 80 l 80 (88)
T cd05029 80 L 80 (88)
T ss_pred H
Confidence 3
No 61
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.44 E-value=2.2e-06 Score=72.51 Aligned_cols=85 Identities=25% Similarity=0.380 Sum_probs=63.1
Q ss_pred ccHHHHHHHHHHH----HHHHHHHHhhh---hcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHH
Q 042432 90 MTVEEVRMTMEEL----AGLEEKIDGLF---EEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTN 162 (190)
Q Consensus 90 I~~~E~~~~l~~l----~e~~~~~~~~~---~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~ 162 (190)
+..+.+..+++.+ .++.+++.... .........++.+|+.+|.|++|.|+.+||.. +..
T Consensus 296 ma~ekl~egi~~F~~d~~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~ 361 (391)
T PRK12309 296 MASEKLDEGIKGFSKALETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDA 361 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHH
Confidence 4444444555444 45555554333 23444567899999999999999999999942 457
Q ss_pred HHHhcCCCCCCceeHHHHHHHHhhhh
Q 042432 163 MITSFDDDKDGRIDFCEFVKLLDRSF 188 (190)
Q Consensus 163 ~~~~~D~d~dG~I~~~EF~~~l~~~~ 188 (190)
+|..+|.|+||.|+++||...+...|
T Consensus 362 ~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 362 VFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred HHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 89999999999999999999987654
No 62
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.42 E-value=1e-06 Score=53.37 Aligned_cols=52 Identities=31% Similarity=0.439 Sum_probs=44.2
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHhhhhcCC-CcHHHHHHHHhhhCCCCCCcccHHHHHHHHHh
Q 042432 86 REKMMTVEEVRMTMEELAGLEEKIDGLFEEGE-PSLEEVKAAFALFDKNEDGFIDASELRNVLCG 149 (190)
Q Consensus 86 ~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~-~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~ 149 (190)
++|.|+.+||+.++..+ ... .+...+..+|..+|.+++|+|+.+||..++..
T Consensus 1 ~~G~i~~~~~~~~l~~~------------g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL------------GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHT------------TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHh------------CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999432 233 67788999999999999999999999998753
No 63
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.40 E-value=2.2e-06 Score=57.72 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=56.0
Q ss_pred cHHHHHHHHhH-HcCCCCC-cccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q 042432 71 EPEAAESAINA-EDSGREK-MMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLC 148 (190)
Q Consensus 71 ~~~~~~~~F~~-~D~d~~G-~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~ 148 (190)
.+..+..+|.. +|++++| .|+.+||+..+..- +.+++ ........+.++++.+|.|++|.|+.+||..++.
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e--~~~~~-----~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTE--LASFT-----KNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHh--hhHhh-----cCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 35668889999 7788986 99999999999532 10000 1223467899999999999999999999998876
Q ss_pred hC
Q 042432 149 GL 150 (190)
Q Consensus 149 ~~ 150 (190)
.+
T Consensus 80 ~l 81 (89)
T cd05023 80 GL 81 (89)
T ss_pred HH
Confidence 53
No 64
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.35 E-value=1.5e-06 Score=62.23 Aligned_cols=70 Identities=31% Similarity=0.489 Sum_probs=62.1
Q ss_pred CCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCC--CCCceeHHHHHHHHhh
Q 042432 116 GEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDD--KDGRIDFCEFVKLLDR 186 (190)
Q Consensus 116 ~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d--~dG~I~~~EF~~~l~~ 186 (190)
......+++++|..||..+||+|+....-.+|+.+|.++ ++.++.+.+...+.+ +-.+|+|++|+-++..
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nP-T~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~ 77 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNP-TNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQ 77 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCC-cHHHHHHHHcCcccchhhhhhhhHHHHHHHHHH
Confidence 344568999999999999999999999999999999998 999999999998877 4468999999988764
No 65
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.34 E-value=6.8e-07 Score=48.03 Aligned_cols=30 Identities=50% Similarity=0.884 Sum_probs=24.9
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHH-hCC
Q 042432 122 EVKAAFALFDKNEDGFIDASELRNVLC-GLS 151 (190)
Q Consensus 122 ~l~~~F~~~D~~~~G~I~~~El~~~l~-~~~ 151 (190)
+++.+|+.+|.|++|+|+.+||..+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467899999999999999999999998 554
No 66
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.28 E-value=1.7e-06 Score=70.17 Aligned_cols=100 Identities=18% Similarity=0.174 Sum_probs=84.8
Q ss_pred HHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHh-CC
Q 042432 73 EAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCG-LS 151 (190)
Q Consensus 73 ~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~-~~ 151 (190)
..+...|..||.+++|.+++.|....+ ..........+.++-+|+.|+.+.||.++..+|.-+++. +|
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~l-----------avlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg 327 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTL-----------AVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG 327 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhh-----------eeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC
Confidence 558889999999999999999998888 345666678899999999999999999999999998875 34
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 152 LAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 152 ~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
.. +-.+..+|..++...+|+|.|.+|.+++..
T Consensus 328 v~---~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 328 VE---VLRVPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred cc---eeeccccchhhhcccCcceeHHHHHHHHHh
Confidence 33 234667899999999999999999988754
No 67
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.22 E-value=1.1e-05 Score=61.39 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=77.6
Q ss_pred CcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 042432 68 VNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVL 147 (190)
Q Consensus 68 ~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l 147 (190)
+.++++.+..+|..||.+.||.|++.|+++.|..+ ..+++.-.++.+.+..|.|.+|+|+..||.-++
T Consensus 94 srkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL------------gapQTHL~lK~mikeVded~dgklSfreflLIf 161 (244)
T KOG0041|consen 94 SRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKL------------GAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIF 161 (244)
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHh------------CCchhhHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34667788999999999999999999999999776 556778899999999999999999999988887
Q ss_pred HhCC-CCCCCHHHHHHHHHh--cCCCCCCceeHHHHH
Q 042432 148 CGLS-LAEASEAECTNMITS--FDDDKDGRIDFCEFV 181 (190)
Q Consensus 148 ~~~~-~~~~~~~e~~~~~~~--~D~d~dG~I~~~EF~ 181 (190)
+... ..+..+..+..+-+. +|....|..--..|-
T Consensus 162 rkaaagEL~~ds~~~~LAr~~eVDVskeGV~GAknFF 198 (244)
T KOG0041|consen 162 RKAAAGELQEDSGLLRLARLSEVDVSKEGVSGAKNFF 198 (244)
T ss_pred HHHhccccccchHHHHHHHhcccchhhhhhhhHHHHH
Confidence 6532 222134444444443 777777765555554
No 68
>PF14658 EF-hand_9: EF-hand domain
Probab=98.20 E-value=8.5e-06 Score=51.31 Aligned_cols=61 Identities=13% Similarity=0.232 Sum_probs=54.0
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCC-CcccHHHHHHHHHh
Q 042432 78 AINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNED-GFIDASELRNVLCG 149 (190)
Q Consensus 78 ~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~-G~I~~~El~~~l~~ 149 (190)
+|..||+++.|.|...++..+|+.+ ......+.++....+.+|+++. |.|+.+.|..+++.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~-----------~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAV-----------TGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHH-----------cCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 6999999999999999999999765 3335677899999999999998 99999999999864
No 69
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.17 E-value=1.4e-06 Score=73.11 Aligned_cols=92 Identities=20% Similarity=0.325 Sum_probs=66.5
Q ss_pred HcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHh------CCCC--
Q 042432 82 EDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCG------LSLA-- 153 (190)
Q Consensus 82 ~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~------~~~~-- 153 (190)
+|.+.+|-|++.|+.-++.-| ..+....+-||+.||.||+|.|+.+||..+..- +|..
T Consensus 208 ~~lg~~GLIsfSdYiFLlTlL--------------S~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hr 273 (489)
T KOG2643|consen 208 YKLGESGLISFSDYIFLLTLL--------------SIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHR 273 (489)
T ss_pred EEcCCCCeeeHHHHHHHHHHH--------------ccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecc
Confidence 466789999999988877433 234557788999999999999999999998742 1210
Q ss_pred --C---CC-HHHHHH--HHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 154 --E---AS-EAECTN--MITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 154 --~---~~-~~e~~~--~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
. .+ .-+++. ....+..+++|+++++||..++.+.
T Consensus 274 d~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~L 315 (489)
T KOG2643|consen 274 DHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQENL 315 (489)
T ss_pred cCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHHH
Confidence 0 00 112222 3445789999999999999998763
No 70
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.16 E-value=1.3e-05 Score=55.39 Aligned_cols=64 Identities=23% Similarity=0.372 Sum_probs=55.5
Q ss_pred CcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHh
Q 042432 118 PSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLD 185 (190)
Q Consensus 118 ~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~ 185 (190)
.........|+..|. ++|.|+.++...++...+. +.+.+..++..+|.++||+++++||+-+|+
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L---~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGL---PRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTS---SHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCC---CHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 456678899999985 6899999999999998885 578899999999999999999999998775
No 71
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.16 E-value=7.3e-06 Score=48.77 Aligned_cols=49 Identities=16% Similarity=0.331 Sum_probs=40.8
Q ss_pred cccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 137 FIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 137 ~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
+++.+|++..|+.+.+.+ ++..+..+|+.+|.+++|++.-+||..++..
T Consensus 1 kmsf~Evk~lLk~~NI~~-~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEM-DDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCc-CHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 368899999999999997 8999999999999999999999999998875
No 72
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.10 E-value=4.4e-06 Score=42.60 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.2
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHH
Q 042432 75 AESAINAEDSGREKMMTVEEVRMTM 99 (190)
Q Consensus 75 ~~~~F~~~D~d~~G~I~~~E~~~~l 99 (190)
++++|+.+|.|+||.|+.+||.+.+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998854
No 73
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.05 E-value=6.1e-06 Score=44.21 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=23.9
Q ss_pred HHHHHHhHHcCCCCCcccHHHHHHHHH
Q 042432 74 AAESAINAEDSGREKMMTVEEVRMTME 100 (190)
Q Consensus 74 ~~~~~F~~~D~d~~G~I~~~E~~~~l~ 100 (190)
+++++|..+|+|++|.|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 367899999999999999999999995
No 74
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.04 E-value=2.1e-05 Score=52.80 Aligned_cols=72 Identities=15% Similarity=0.226 Sum_probs=54.6
Q ss_pred HHHHHHHHhHHcCC--CCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHh
Q 042432 72 PEAAESAINAEDSG--REKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCG 149 (190)
Q Consensus 72 ~~~~~~~F~~~D~d--~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~ 149 (190)
+..+-.+|..|+.. .+|.|+.+||+.++... +- ... ........+..+|+.+|.+++|.|+.+||...+..
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~--~g----~~~-t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKE--LP----NFL-KKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHH--hh----Hhh-ccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 45677889999966 47999999999999532 00 000 01123678999999999999999999999988764
Q ss_pred C
Q 042432 150 L 150 (190)
Q Consensus 150 ~ 150 (190)
+
T Consensus 80 ~ 80 (88)
T cd05030 80 V 80 (88)
T ss_pred H
Confidence 3
No 75
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.02 E-value=2.5e-05 Score=65.88 Aligned_cols=69 Identities=23% Similarity=0.287 Sum_probs=56.6
Q ss_pred HHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhC
Q 042432 74 AAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGL 150 (190)
Q Consensus 74 ~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~ 150 (190)
.+.-+|+.+|+|++|.|+.+||+.++.-+ ...+ +..-+.+.+.+.-+.+|-|+||.|+.+||..+++-.
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~-------~sh~-~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLL-------SSHM-NGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHH-------Hhhc-CCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 36778999999999999999999999544 2222 234467788889999999999999999999998753
No 76
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.01 E-value=7.2e-06 Score=41.78 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=13.4
Q ss_pred HHHHhhhCCCCCCcccHHHHHHH
Q 042432 124 KAAFALFDKNEDGFIDASELRNV 146 (190)
Q Consensus 124 ~~~F~~~D~~~~G~I~~~El~~~ 146 (190)
+.+|+.+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 44566666666666666666553
No 77
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.94 E-value=0.00013 Score=69.31 Aligned_cols=68 Identities=22% Similarity=0.455 Sum_probs=60.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCC-CHH-----HHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEA-SEA-----ECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~-~~~-----e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
..+..-+|+.||++++|.++..+|+.+|+.+|+.++ .++ ++++++...|++.+|+|+..+|+++|..+
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 446667999999999999999999999999998873 344 69999999999999999999999999754
No 78
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.92 E-value=0.00014 Score=69.09 Aligned_cols=111 Identities=12% Similarity=0.145 Sum_probs=70.5
Q ss_pred ccCCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHH
Q 042432 64 DKNIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASEL 143 (190)
Q Consensus 64 ~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El 143 (190)
-.+++.+.+.++.-+|..||++++|.+++++|+.+++.+..-. .+.....+...+.+.....|++.+|+|+..+.
T Consensus 2244 ~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~l-----pmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY 2318 (2399)
T KOG0040|consen 2244 HNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDL-----PMVEEGEPEPEFEEILDLVDPNRDGYVSLQDY 2318 (2399)
T ss_pred cCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCC-----cccccCCCChhHHHHHHhcCCCCcCcccHHHH
Confidence 5778888899999999999999999999999999998760000 00011223346666666777777777777776
Q ss_pred HHHHHhC-CCCCCCHHHHHHHHHhcCCCCCCceeHHHH
Q 042432 144 RNVLCGL-SLAEASEAECTNMITSFDDDKDGRIDFCEF 180 (190)
Q Consensus 144 ~~~l~~~-~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF 180 (190)
..++-.- ..++.++++++..|+..|. +.-.|+.++.
T Consensus 2319 ~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~ 2355 (2399)
T KOG0040|consen 2319 MAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEEL 2355 (2399)
T ss_pred HHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHH
Confidence 6655321 2222355566666665554 3334444433
No 79
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.92 E-value=2.7e-05 Score=61.14 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=69.6
Q ss_pred HHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhC-C
Q 042432 73 EAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGL-S 151 (190)
Q Consensus 73 ~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~-~ 151 (190)
..++.+|...|.|-||.|+..|+++.+..- ..+. .....+.-+..|+..|+||+|.|+++|++--+... |
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImek--taEH-------fqeameeSkthFraVDpdgDGhvsWdEykvkFlaskg 171 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEK--TAEH-------FQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKG 171 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHH--HHHH-------HHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcC
Confidence 458889999999999999999999998532 0000 11122344567999999999999999997654332 1
Q ss_pred C-------------CCCCHHHHHHHHHhcCCCCCCc---------eeHHHHHHHHhhhhC
Q 042432 152 L-------------AEASEAECTNMITSFDDDKDGR---------IDFCEFVKLLDRSFS 189 (190)
Q Consensus 152 ~-------------~~~~~~e~~~~~~~~D~d~dG~---------I~~~EF~~~l~~~~~ 189 (190)
. +..-+++.+ .+..-+++.+|+ ++-+||..++++-++
T Consensus 172 hsekevadairlneelkVDeEtq-evlenlkdRwyqaDsppadlllteeEflsFLHPEhS 230 (362)
T KOG4251|consen 172 HSEKEVADAIRLNEELKVDEETQ-EVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHS 230 (362)
T ss_pred cchHHHHHHhhccCcccccHHHH-HHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhh
Confidence 1 111123333 233334444555 444999999887654
No 80
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.85 E-value=7.5e-05 Score=51.68 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=57.2
Q ss_pred CCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHH
Q 042432 66 NIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRN 145 (190)
Q Consensus 66 ~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~ 145 (190)
.++.++.+...++|...|+ ++|.|+.++.+..+. ...-..+.+..++...|.+++|+++.+||.-
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~--------------~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~i 67 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFM--------------KSGLPRDVLAQIWNLADIDNDGKLDFEEFAI 67 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHH--------------HTTSSHHHHHHHHHHH-SSSSSEEEHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHH--------------HcCCCHHHHHHHHhhhcCCCCCcCCHHHHHH
Confidence 3577888999999999985 689999999998883 2345678999999999999999999999998
Q ss_pred HHHh
Q 042432 146 VLCG 149 (190)
Q Consensus 146 ~l~~ 149 (190)
+++-
T Consensus 68 Am~L 71 (104)
T PF12763_consen 68 AMHL 71 (104)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 81
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.83 E-value=4.9e-05 Score=64.37 Aligned_cols=53 Identities=30% Similarity=0.312 Sum_probs=45.9
Q ss_pred HHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHh
Q 042432 72 PEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCG 149 (190)
Q Consensus 72 ~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~ 149 (190)
.+.++.+|+.+|.|++|.|+.+||.. ...+|..+|.|++|.|+.+||..++..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 45578899999999999999999832 246799999999999999999998864
No 82
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.77 E-value=1.2e-05 Score=56.47 Aligned_cols=62 Identities=31% Similarity=0.458 Sum_probs=46.0
Q ss_pred CcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHH
Q 042432 118 PSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVK 182 (190)
Q Consensus 118 ~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~ 182 (190)
.....+.-.|..+|.|+||.|+..|++.+...+ .+ .+.-+...+..+|.|+||.|+..|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l-~~--~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL-MP--PEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT-ST--TGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH-hh--hHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 345677778999999999999999999887655 22 455688999999999999999999975
No 83
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=8.9e-05 Score=51.59 Aligned_cols=59 Identities=31% Similarity=0.470 Sum_probs=46.4
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHhC------C---CCCCCHHHHHH----HHHhcCCCCCCceeHHHHHHH
Q 042432 125 AAFALFDKNEDGFIDASELRNVLCGL------S---LAEASEAECTN----MITSFDDDKDGRIDFCEFVKL 183 (190)
Q Consensus 125 ~~F~~~D~~~~G~I~~~El~~~l~~~------~---~~~~~~~e~~~----~~~~~D~d~dG~I~~~EF~~~ 183 (190)
-.|+..|.|++|.|+-=|+.+++... | .+++++.|+.. +++.-|.|+||.|+|.||++.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 36889999999999999999998753 2 24456777554 455668999999999999874
No 84
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.68 E-value=0.00013 Score=43.45 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=38.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhC
Q 042432 89 MMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGL 150 (190)
Q Consensus 89 ~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~ 150 (190)
++++.|++..++.+ +-..+......+|+..|++++|.+..+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~------------NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMM------------NIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHT------------T----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH------------ccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36889999999755 445567888999999999999999999999988753
No 85
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.64 E-value=0.00012 Score=57.52 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=76.6
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHHHH---HHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCC
Q 042432 75 AESAINAEDSGREKMMTVEEVRMTMEEL---AGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGLS 151 (190)
Q Consensus 75 ~~~~F~~~D~d~~G~I~~~E~~~~l~~l---~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~ 151 (190)
++++.+.+|+|+|..++..||..+.-.. ++++++-. ....++.++.=..+|.|.+|.+|.+||..+.....
T Consensus 238 VkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdidd------nwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n 311 (362)
T KOG4251|consen 238 VKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDD------NWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQN 311 (362)
T ss_pred HHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHH------HHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchh
Confidence 6778899999999999999998877322 11111100 00123444555578999999999999999988777
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCceeHHHHHH
Q 042432 152 LAEASEAECTNMITSFDDDKDGRIDFCEFVK 182 (190)
Q Consensus 152 ~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~ 182 (190)
... ...++..++...|.|++.+++.+|.+.
T Consensus 312 ~~~-alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 312 FRL-ALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred hhh-hHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 766 778889999999999999999998875
No 86
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.59 E-value=0.001 Score=44.75 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=54.2
Q ss_pred HHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhC
Q 042432 72 PEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGL 150 (190)
Q Consensus 72 ~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~ 150 (190)
+..+-.+|..|- ...|+++..||+.++.. |+-.++ ........+.++++..|.|+||.|+..||-..+..+
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~--Elp~~l-----~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEK--EFSEFL-----KNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHH--HhHHHH-----cCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 445677899998 44569999999999952 333222 223457789999999999999999999999887654
No 87
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.55 E-value=0.00031 Score=60.56 Aligned_cols=67 Identities=27% Similarity=0.464 Sum_probs=57.0
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCC--CCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAE--ASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~--~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
...++..|...| +++|+++..|+..++...+... ...+++++++...+.|.+|+|+|+||+..+...
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 346778999999 9999999999999998876542 148889999999999999999999999976543
No 88
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.43 E-value=0.00085 Score=57.08 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=50.0
Q ss_pred CCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHh-------CCC-CCCCHHHHHHHHHhcCCCCCCceeHHHHHH
Q 042432 117 EPSLEEVKAAFALFDKNEDGFIDASELRNVLCG-------LSL-AEASEAECTNMITSFDDDKDGRIDFCEFVK 182 (190)
Q Consensus 117 ~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~-------~~~-~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~ 182 (190)
..+...+.-.|+.+|.+++|.|+..|++-+... .+. .+.-++-+.+++..+-+...|+|+.++|..
T Consensus 347 k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 347 KDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 344567888999999999999999998877653 232 221244467788888877889999999986
No 89
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.26 E-value=0.0011 Score=56.46 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=76.5
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHh----hhCCCCCCcccHHHHHHHHHhC
Q 042432 75 AESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFA----LFDKNEDGFIDASELRNVLCGL 150 (190)
Q Consensus 75 ~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~----~~D~~~~G~I~~~El~~~l~~~ 150 (190)
+.-.|-.+|+|+||.|+.+++.+.- ....+..-+..+|. .+-...+|.++.++|..++-++
T Consensus 280 iy~kFweLD~Dhd~lidk~~L~ry~---------------d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 280 IYCKFWELDTDHDGLIDKEDLKRYG---------------DHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE 344 (493)
T ss_pred HHHHHhhhccccccccCHHHHHHHh---------------ccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh
Confidence 3344888899999999999998876 23344667777887 3345678999999999998887
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 151 SLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 151 ~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
..+. ++.-++.+|+.+|.+++|.++-.|..-+...
T Consensus 345 e~k~-t~~SleYwFrclDld~~G~Lt~~el~~fyee 379 (493)
T KOG2562|consen 345 EDKD-TPASLEYWFRCLDLDGDGILTLNELRYFYEE 379 (493)
T ss_pred ccCC-CccchhhheeeeeccCCCcccHHHHHHHHHH
Confidence 7776 7788999999999999999999887665543
No 90
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.20 E-value=0.00022 Score=50.07 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=45.5
Q ss_pred CCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHH
Q 042432 67 IVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRN 145 (190)
Q Consensus 67 ~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~ 145 (190)
........+...|..+|.|+||.++..|+..+...+ .....-++..|+..|.|+||.||..|...
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--------------~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--------------MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--------------STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--------------hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344555667888999999999999999998877211 23344678889999999999999999864
No 91
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.04 E-value=0.0037 Score=53.83 Aligned_cols=100 Identities=19% Similarity=0.292 Sum_probs=70.1
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHHHH-----------------------------HHHHHHHHhhhhcCCCcHHHHHH
Q 042432 75 AESAINAEDSGREKMMTVEEVRMTMEEL-----------------------------AGLEEKIDGLFEEGEPSLEEVKA 125 (190)
Q Consensus 75 ~~~~F~~~D~d~~G~I~~~E~~~~l~~l-----------------------------~e~~~~~~~~~~~~~~~~~~l~~ 125 (190)
...+|+.||+.++|.+|++++..++... .+|.+++... ..+.-++
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~------~~E~~~q 183 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEF------QLEHAEQ 183 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHH------HHHHHHH
Confidence 4568999999999999999999999876 2222222221 2456789
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCC-ceeHHHHH
Q 042432 126 AFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDG-RIDFCEFV 181 (190)
Q Consensus 126 ~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG-~I~~~EF~ 181 (190)
+|+..|+.++|.|+.=+++.++-......++ ..++..+-.+.-..+| ++++-.|.
T Consensus 184 afr~~d~~~ng~is~Ldfq~imvt~~~h~lt-~~v~~nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 184 AFREKDKAKNGFISVLDFQDIMVTIRIHLLT-PFVEENLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred HHHHhcccCCCeeeeechHhhhhhhhhhcCC-HHHhhhhhhhcCCCCccccchHHHH
Confidence 9999999999999999999998776666533 3444444444333333 56666554
No 92
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.01 E-value=0.00076 Score=33.93 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=23.6
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHH
Q 042432 75 AESAINAEDSGREKMMTVEEVRMTME 100 (190)
Q Consensus 75 ~~~~F~~~D~d~~G~I~~~E~~~~l~ 100 (190)
++.+|..+|.+++|.|++.||..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 56789999999999999999999885
No 93
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.94 E-value=0.0012 Score=33.13 Aligned_cols=25 Identities=52% Similarity=0.805 Sum_probs=13.3
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHH
Q 042432 124 KAAFALFDKNEDGFIDASELRNVLC 148 (190)
Q Consensus 124 ~~~F~~~D~~~~G~I~~~El~~~l~ 148 (190)
+.+|+.+|.+++|.|+.+||..+++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455555555555555555555543
No 94
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=96.89 E-value=0.023 Score=49.18 Aligned_cols=95 Identities=16% Similarity=0.269 Sum_probs=65.5
Q ss_pred hHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCC--CCH
Q 042432 80 NAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAE--ASE 157 (190)
Q Consensus 80 ~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~--~~~ 157 (190)
..-|.-+||.|+++||+..-.- ..........+|..||+.++|.++.+++..++....... +-.
T Consensus 81 ~iaD~tKDglisf~eF~afe~~--------------lC~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~ 146 (694)
T KOG0751|consen 81 SIADQTKDGLISFQEFRAFESV--------------LCAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFN 146 (694)
T ss_pred hhhhhcccccccHHHHHHHHhh--------------ccCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCcc
Confidence 4457788888999998776622 234566778899999999999999999999988765432 011
Q ss_pred HHHHHHHHhcCCCCCCceeHHHHHHHHhhhh
Q 042432 158 AECTNMITSFDDDKDGRIDFCEFVKLLDRSF 188 (190)
Q Consensus 158 ~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~~ 188 (190)
...+-+=..+..+....++|.||..++++..
T Consensus 147 ~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~ 177 (694)
T KOG0751|consen 147 WDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQ 177 (694)
T ss_pred CCcchHHHHhhhHHHHhccHHHHHHHHHHHH
Confidence 2233333334444556799999999888754
No 95
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.007 Score=54.67 Aligned_cols=63 Identities=22% Similarity=0.378 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHh
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLD 185 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~ 185 (190)
....+..|+..|+..+|+++-..-+.+|-..+.+ ...+-.++...|.|+||+++-+||+-.|.
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lp---q~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQSGLP---QNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHhcCCc---hhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 4567889999999999999999999999877754 56788899999999999999999986654
No 96
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.88 E-value=0.0031 Score=41.48 Aligned_cols=66 Identities=18% Similarity=0.416 Sum_probs=52.6
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHhCC-CCCCCHHHHHHHHHhcCCC----CCCceeHHHHHHHHhhhh
Q 042432 122 EVKAAFALFDKNEDGFIDASELRNVLCGLS-LAEASEAECTNMITSFDDD----KDGRIDFCEFVKLLDRSF 188 (190)
Q Consensus 122 ~l~~~F~~~D~~~~G~I~~~El~~~l~~~~-~~~~~~~e~~~~~~~~D~d----~dG~I~~~EF~~~l~~~~ 188 (190)
++..+|..+-. +.+.||.++|.++|+.-. .+..+.+++..++..+.++ ..+.+++++|..+|...-
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 46788999955 789999999999998654 3233889999999988654 468999999999997543
No 97
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.81 E-value=0.013 Score=52.85 Aligned_cols=105 Identities=13% Similarity=0.205 Sum_probs=74.1
Q ss_pred ccCCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHH
Q 042432 64 DKNIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASEL 143 (190)
Q Consensus 64 ~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El 143 (190)
.+.+......++..+|+..|++++|.+++.+...++..+ ...-....++..|+..|..++|.+...++
T Consensus 127 ~~~~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~------------n~~l~~~~~~~~f~e~~~~~~~k~~~~~~ 194 (746)
T KOG0169|consen 127 SMRQRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQL------------NVQLSESKARRLFKESDNSQTGKLEEEEF 194 (746)
T ss_pred hhhhcchHHHHHHHHHHHHccccccccchhhHHHHHHHH------------HHhhhHHHHHHHHHHHHhhccceehHHHH
Confidence 566667778889999999999999999999999999766 12223446666677667777888888887
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHh
Q 042432 144 RNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLD 185 (190)
Q Consensus 144 ~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~ 185 (190)
..+......++ ++..+|..+..+ .+.++.++++.++.
T Consensus 195 ~~~~~~~~~rp----ev~~~f~~~s~~-~~~ls~~~L~~Fl~ 231 (746)
T KOG0169|consen 195 VKFRKELTKRP----EVYFLFVQYSHG-KEYLSTDDLLRFLE 231 (746)
T ss_pred HHHHHhhccCc----hHHHHHHHHhCC-CCccCHHHHHHHHH
Confidence 77776665442 555556555433 55666666655554
No 98
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.70 E-value=0.0055 Score=53.08 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=64.0
Q ss_pred ccCCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHH
Q 042432 64 DKNIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASEL 143 (190)
Q Consensus 64 ~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El 143 (190)
-.++++.|+..+++.|...| |++|.|+..|+..++... . .......++.++++....+.|.+|.|+.+||
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~--------~-~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f 79 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKA--------K-LPLGYFVREEIKEILGEVGVDADGRVEFEEF 79 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHh--------c-ccccchhHHHHHHHHhccCCCcCCccCHHHH
Confidence 56788999999999999999 999999999999999654 1 1112234789999999999999999999999
Q ss_pred HHHHHhC
Q 042432 144 RNVLCGL 150 (190)
Q Consensus 144 ~~~l~~~ 150 (190)
..++..+
T Consensus 80 ~~~~~~l 86 (627)
T KOG0046|consen 80 VGIFLNL 86 (627)
T ss_pred HHHHHhh
Confidence 9976543
No 99
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.67 E-value=0.037 Score=41.48 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=76.8
Q ss_pred HHHHHHhHHcCCCCCcccHHHHHHHHHHH------HHHHHHH----------------------------------Hhhh
Q 042432 74 AAESAINAEDSGREKMMTVEEVRMTMEEL------AGLEEKI----------------------------------DGLF 113 (190)
Q Consensus 74 ~~~~~F~~~D~d~~G~I~~~E~~~~l~~l------~e~~~~~----------------------------------~~~~ 113 (190)
.+++=...||.|+||.|..-|--+.++.+ .-+..++ +..+
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 35555688999999999999999999888 2222221 0111
Q ss_pred h-cCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCC------CCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 114 E-EGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAE------ASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 114 ~-~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~------~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
. +..-......++|..+++.+.+.+|..|+.++++.-.... .+.-|+..++..+ .+.||.+..+.-..++..
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vYDG 166 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVYDG 166 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhcch
Confidence 1 1111267899999999998899999999999998633221 1344555555544 577899999987766543
No 100
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.35 E-value=0.016 Score=47.80 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=59.8
Q ss_pred HHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCC
Q 042432 72 PEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGLS 151 (190)
Q Consensus 72 ~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~ 151 (190)
...+..+|..+|.|.||.++..|++.+- ....+.-++..|+..|...||.|+.+|....+...+
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~----------------ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIE----------------LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhh----------------ccCchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 3557778999999999999999998877 356678999999999999999999999999887766
Q ss_pred CCCCCHHHHHH
Q 042432 152 LAEASEAECTN 162 (190)
Q Consensus 152 ~~~~~~~e~~~ 162 (190)
.+ =..+...
T Consensus 313 ~p--c~~e~~r 321 (434)
T KOG3555|consen 313 PP--CQAELCR 321 (434)
T ss_pred Cc--cccHHHH
Confidence 33 3444443
No 101
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.06 E-value=0.02 Score=41.73 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=49.3
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHH----HHHHHHhhhCCCCCCcccHHHHHHHHHh
Q 042432 75 AESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLE----EVKAAFALFDKNEDGFIDASELRNVLCG 149 (190)
Q Consensus 75 ~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~----~l~~~F~~~D~~~~G~I~~~El~~~l~~ 149 (190)
+.-+|+.||-|+|+.|.-.++...+..+ ...+.+.+ ...++....|.+|+|+++..||.+++..
T Consensus 110 ~~YAFkIYDfd~D~~i~~~DL~~~l~~l-----------Tr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 110 AKYAFKIYDFDGDEFIGHDDLEKTLTSL-----------TRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred hhheeEEeecCCCCcccHHHHHHHHHHH-----------hhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 4557899999999999999999999766 11222222 3445667789999999999999998754
No 102
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.77 E-value=0.51 Score=46.00 Aligned_cols=61 Identities=16% Similarity=0.403 Sum_probs=51.2
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 125 AAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 125 ~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
..|+.||++|.|.|+..+|.+++..-... ++.|++-++..+..|.+...+|++|+.-++..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k~y--tqse~dfllscae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHKHY--TQSEIDFLLSCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccccc--hhHHHHHHHHhhccCccccccHHHHHHHhcCc
Confidence 35889999999999999999999754443 78888888888888888899999999877654
No 103
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.70 E-value=0.069 Score=47.18 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCH-HHHHHHHHhcCCCCCCceeHHHHHHHH
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASE-AECTNMITSFDDDKDGRIDFCEFVKLL 184 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~-~e~~~~~~~~D~d~dG~I~~~EF~~~l 184 (190)
.+.+...|..||.|+||.++..||...+..+...+-+. -+.+. .-.+..|.++|+-|++..
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~----t~~~~~G~ltl~g~l~~W 375 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS----TVKNERGWLTLNGFLSQW 375 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc----ceecccceeehhhHHHHH
Confidence 56788999999999999999999999998765432000 00000 012356888988887654
No 104
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=0.043 Score=47.50 Aligned_cols=63 Identities=24% Similarity=0.350 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHh
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLD 185 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~ 185 (190)
++...+.|+-.-.|-.|+|+-.--+.++.+..++ -.|+..|++..|.|.||.++..||++.++
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSklp---i~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLP---IEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhccCc---hHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 5566678888889999999999999999877764 57899999999999999999999999875
No 105
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.02 E-value=0.017 Score=47.40 Aligned_cols=61 Identities=26% Similarity=0.267 Sum_probs=48.6
Q ss_pred HHHHHHhhhCCCCCCcccHHHH---HHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHh
Q 042432 122 EVKAAFALFDKNEDGFIDASEL---RNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLD 185 (190)
Q Consensus 122 ~l~~~F~~~D~~~~G~I~~~El---~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~ 185 (190)
.+.-.|..+|+|.++.|.+.|. +.++..-.. ...-..++++..|.|+|.+|++.|+...+.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~---~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSK---PRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhcc---HHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 5666799999999999999985 555543322 234578899999999999999999998875
No 106
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=95.00 E-value=0.014 Score=37.17 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=39.2
Q ss_pred CcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCC-------CCCceeHHHHHHH
Q 042432 118 PSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDD-------KDGRIDFCEFVKL 183 (190)
Q Consensus 118 ~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d-------~dG~I~~~EF~~~ 183 (190)
.+.+++.++|+.+ .++.++||.+||++.|. .++++.+...+..- ..|..+|..|++.
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~--------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLT--------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS---------CCCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcC--------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 3457899999999 78889999999999873 22234444444221 2367999988753
No 107
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.35 E-value=0.071 Score=44.17 Aligned_cols=63 Identities=29% Similarity=0.351 Sum_probs=53.1
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 119 SLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 119 ~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
-...+.-+|..+|.|.||.++..||+.+... . .+.-++..|...|...||.|+-.|+...+.+
T Consensus 248 CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----k-nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNYDLLLDQSELRAIELD----K-NEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhhccccccccccCHHHhhhhhcc----C-chhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 3567888999999999999999999987632 1 3445889999999999999999999887765
No 108
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.32 E-value=0.15 Score=35.73 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=42.4
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHH----HHHHHHhhhCCCCCCcccHHHHHHH
Q 042432 78 AINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLE----EVKAAFALFDKNEDGFIDASELRNV 146 (190)
Q Consensus 78 ~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~----~l~~~F~~~D~~~~G~I~~~El~~~ 146 (190)
-|...|-|++|.++--|+.+++.....-. -+..-...-.++. -+..+.+--|.|+||+|+..||.+.
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h--~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAH--DSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhh--hcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 47888999999999999999996541000 0000000011233 3334556668999999999998764
No 109
>PLN02952 phosphoinositide phospholipase C
Probab=94.11 E-value=0.55 Score=42.17 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=62.6
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCC-CCCCHHHHHHHH
Q 042432 86 REKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSL-AEASEAECTNMI 164 (190)
Q Consensus 86 ~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~-~~~~~~e~~~~~ 164 (190)
+.|.+++++|....+.+ .........++..+|..+-. +.+.++.++|..+|..... ...+.+++..++
T Consensus 13 ~~g~l~f~~f~~f~~~~----------k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~ 81 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKF----------KITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIV 81 (599)
T ss_pred cCCCcCHHHHHHHHHHh----------ccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHH
Confidence 46899999998777543 11222357899999999964 4478999999999987643 222666677665
Q ss_pred HhcC-------CCCCCceeHHHHHHHHhh
Q 042432 165 TSFD-------DDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 165 ~~~D-------~d~dG~I~~~EF~~~l~~ 186 (190)
..+- ..+.+.++++.|..+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 82 EEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred HHHHhhccccccccccCcCHHHHHHHHcC
Confidence 5431 112345899999999863
No 110
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.67 E-value=0.21 Score=46.41 Aligned_cols=69 Identities=26% Similarity=0.354 Sum_probs=58.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCH-----HHHHHHHHhcCCCCCCceeHHHHHHHHhhhhC
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASE-----AECTNMITSFDDDKDGRIDFCEFVKLLDRSFS 189 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~-----~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~~~ 189 (190)
..+++..|+.+|+...|.++.+++..++..+|+.. .. .++..+....|.+.-|.+++.+|...|.+.+.
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~-e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNT-EEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCccc-chhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 57899999999999999999999999999999986 43 23455666677777799999999999998764
No 111
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=93.49 E-value=0.089 Score=43.32 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=57.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
.+.++..|..||.+++|.++..|--..+.-+..+..+.+-++-.|+.++.+.||.+.-.+|-.++.-.
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~ 325 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV 325 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 46888999999999999999999877777666555588889999999999999999998888776543
No 112
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.41 E-value=0.21 Score=40.98 Aligned_cols=64 Identities=28% Similarity=0.455 Sum_probs=45.8
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHh----CCCCCCCHHH-----------HHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 123 VKAAFALFDKNEDGFIDASELRNVLCG----LSLAEASEAE-----------CTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 123 l~~~F~~~D~~~~G~I~~~El~~~l~~----~~~~~~~~~e-----------~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
=+..|...|.|+||+++-.||...+.. +-.+.-.++. -+.+++.+|.|.|..|+.+||++.-.+
T Consensus 246 PKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 246 PKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred cchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 356788899999999999998887653 1111101111 245788999999999999999986543
No 113
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=93.15 E-value=0.39 Score=43.68 Aligned_cols=70 Identities=23% Similarity=0.357 Sum_probs=61.3
Q ss_pred CCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 117 EPSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 117 ~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
.....++...|...|++++|.++..+...+++.+...+ ++.-+..+|++.+..+++++..++|.++....
T Consensus 132 ~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l-~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 132 SRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQL-SESKARRLFKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred chHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhh-hHHHHHHHHHHHHhhccceehHHHHHHHHHhh
Confidence 34567888999999999999999999999999988877 77788899999988899999999999887653
No 114
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.95 E-value=0.24 Score=43.08 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=61.0
Q ss_pred cCCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHH
Q 042432 65 KNIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELR 144 (190)
Q Consensus 65 ~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~ 144 (190)
..++.++.+.+-..|+.+.+|-.|.|+-.--+..+. +......++.-++++.|.++||.++..||.
T Consensus 223 w~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFt--------------KSklpi~ELshIWeLsD~d~DGALtL~EFc 288 (737)
T KOG1955|consen 223 WQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFT--------------KSKLPIEELSHIWELSDVDRDGALTLSEFC 288 (737)
T ss_pred cccCHHHHHHHHhhhhcccCCcccccccHHHHhhhh--------------hccCchHHHHHHHhhcccCccccccHHHHH
Confidence 467777888888899999999999999988887773 345568899999999999999999999999
Q ss_pred HHHHh
Q 042432 145 NVLCG 149 (190)
Q Consensus 145 ~~l~~ 149 (190)
.++..
T Consensus 289 AAfHL 293 (737)
T KOG1955|consen 289 AAFHL 293 (737)
T ss_pred hhHhh
Confidence 98753
No 115
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=92.90 E-value=0.27 Score=32.09 Aligned_cols=66 Identities=21% Similarity=0.228 Sum_probs=49.0
Q ss_pred HHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCC----CCCcccHHHHHHHHHh
Q 042432 74 AAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKN----EDGFIDASELRNVLCG 149 (190)
Q Consensus 74 ~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~----~~G~I~~~El~~~l~~ 149 (190)
++..+|..+-. +.+.++.++|.+.|..- -.....+...+...+..|.++ ..+.++.+.|..+|..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~e----------Q~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREE----------QGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHT----------SS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHH----------hccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 36778999955 78899999999999532 111123577888888887544 4799999999999965
Q ss_pred C
Q 042432 150 L 150 (190)
Q Consensus 150 ~ 150 (190)
-
T Consensus 70 ~ 70 (83)
T PF09279_consen 70 D 70 (83)
T ss_dssp T
T ss_pred C
Confidence 3
No 116
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=92.89 E-value=0.088 Score=43.35 Aligned_cols=64 Identities=19% Similarity=0.096 Sum_probs=48.0
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHh
Q 042432 75 AESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCG 149 (190)
Q Consensus 75 ~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~ 149 (190)
+..-|..+|+|.++.|...|.+-.=+-+ ........-.+..|+..|.|+|..|+.+|++..|..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l-----------~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVL-----------LKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHH-----------HhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 4445999999999999998854433211 122234556778899999999999999999998854
No 117
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.83 E-value=0.59 Score=35.14 Aligned_cols=67 Identities=13% Similarity=0.293 Sum_probs=52.0
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCC-----------------------------------------------
Q 042432 121 EEVKAAFALFDKNEDGFIDASELRNVLCGLSLA----------------------------------------------- 153 (190)
Q Consensus 121 ~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~----------------------------------------------- 153 (190)
..+++-...||.|+||.|.+-|-..-++.+|..
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 356777788999999999999976666554333
Q ss_pred -----CCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 154 -----EASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 154 -----~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
-..++-.+++|..++..+.+.+++.|..+++..+
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 0135668999999998888899999999998753
No 118
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.68 E-value=0.35 Score=44.23 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=52.1
Q ss_pred HHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q 042432 72 PEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLC 148 (190)
Q Consensus 72 ~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~ 148 (190)
.-..+++|+..|+..+|.++-..-+.+|-. .......+..+..+-|.|+||.++.+||.-++.
T Consensus 194 klKY~QlFNa~DktrsG~Lsg~qaR~aL~q--------------S~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 194 KLKYRQLFNALDKTRSGYLSGQQARSALGQ--------------SGLPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhHHHHHhhhcccccccccccHHHHHHHHh--------------cCCchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 345788999999999999999999999832 233456788888999999999999999877654
No 119
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=91.17 E-value=0.3 Score=43.69 Aligned_cols=56 Identities=21% Similarity=0.314 Sum_probs=47.9
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHH
Q 042432 75 AESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASEL 143 (190)
Q Consensus 75 ~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El 143 (190)
+.++|+..|.+.+|.|++.++..++..+ ......+.+.-.|+.+|.+++ ..+.+|.
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l------------~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSIL------------KAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHH------------HhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 6789999999999999999999999655 223345688889999999999 8988887
No 120
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.87 E-value=0.44 Score=42.18 Aligned_cols=66 Identities=18% Similarity=0.363 Sum_probs=58.6
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
....+..|..+|.++.|+++.....++++..+... +++.++++..++|.+-.|.+...||..++..
T Consensus 592 ~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~-d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 592 FLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGW-DEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 45667789999999999999999999999988666 8888999999999998999999999988754
No 121
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=89.05 E-value=2.8 Score=30.96 Aligned_cols=60 Identities=17% Similarity=0.309 Sum_probs=45.1
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHhCCC---CCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 126 AFALFDKNEDGFIDASELRNVLCGLSL---AEASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 126 ~F~~~D~~~~G~I~~~El~~~l~~~~~---~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
+|..|-..+...++...|.++++..++ .+ +...+.-+|..+-..+..+|+|++|..+|..
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~-t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDCGIIDKKL-TSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS--HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHcCCCCCCC-chHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 344445566788999999999998654 33 7888999999976666678999999998864
No 122
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=86.92 E-value=7.2 Score=26.13 Aligned_cols=73 Identities=10% Similarity=0.074 Sum_probs=45.7
Q ss_pred HHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHh
Q 042432 73 EAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCG 149 (190)
Q Consensus 73 ~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~ 149 (190)
+.++-+|+.+ .|.+|.++..-|...+..+-++-..+.+...-. ..+..++..|..- .....|+.++|..++..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg-~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFG-YIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT---HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCcccccc-CcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 4567789988 899999999999999976644444332222222 2567888888864 45677899999888864
No 123
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=85.89 E-value=1.4 Score=39.08 Aligned_cols=78 Identities=9% Similarity=0.172 Sum_probs=63.5
Q ss_pred hhccCCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHH
Q 042432 62 CADKNIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDAS 141 (190)
Q Consensus 62 ~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~ 141 (190)
+....++..+....+.-|..+|.|+.|.++.++..+.|... +..-..+.+.+..+..|.+-+|++...
T Consensus 582 ~~~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~------------~~~~d~~~~~~~l~ea~~~~~g~v~l~ 649 (680)
T KOG0042|consen 582 SIPIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSE------------NVGWDEDRLHEELQEADENLNGFVELR 649 (680)
T ss_pred ccccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh------------cCCCCHHHHHHHHHHHHHhhcceeeHH
Confidence 34556677888888899999999999999999999999643 234567788888888888889999999
Q ss_pred HHHHHHHhCC
Q 042432 142 ELRNVLCGLS 151 (190)
Q Consensus 142 El~~~l~~~~ 151 (190)
|+.+.+....
T Consensus 650 e~~q~~s~~~ 659 (680)
T KOG0042|consen 650 EFLQLMSAIK 659 (680)
T ss_pred HHHHHHHHHh
Confidence 9888876543
No 124
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=85.35 E-value=12 Score=35.27 Aligned_cols=67 Identities=15% Similarity=0.320 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHh---------CCCCCCCHHHHHHHHHhcCCCC----CCceeHHHHHHHHhh
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCG---------LSLAEASEAECTNMITSFDDDK----DGRIDFCEFVKLLDR 186 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~---------~~~~~~~~~e~~~~~~~~D~d~----dG~I~~~EF~~~l~~ 186 (190)
..++.++|..+..++..++|.++|-.++.. +-++..++..+..+++.+..|+ +|.++-+-|+.++..
T Consensus 220 R~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 220 RPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred chhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 458889999999888899999999999864 2344457888999999887664 588999999888754
No 125
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=85.05 E-value=12 Score=26.76 Aligned_cols=106 Identities=10% Similarity=0.086 Sum_probs=59.4
Q ss_pred HhhhcchhhHHHHHHhhhhHhHHHHHhhhccCCCcccHHHHHHHHhHHcCCC--CCcccHHHHHHHHHHHHHHHHHHHhh
Q 042432 35 RDISSSFHCVFRVFSGIFSNIKKKIQLCADKNIVNKEPEAAESAINAEDSGR--EKMMTVEEVRMTMEELAGLEEKIDGL 112 (190)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~--~G~I~~~E~~~~l~~l~e~~~~~~~~ 112 (190)
+++..-....|+...++..... ...+..-.+..+.++|+....+. +..++..|+..++..+ .....+-
T Consensus 10 ~~~n~IrfsaYRtA~KLR~lQk-------~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~i---y~~l~~~ 79 (127)
T PF09068_consen 10 QDFNNIRFSAYRTAMKLRFLQK-------RLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSI---YEFLNKR 79 (127)
T ss_dssp GGGTT-SSHHHHHHHHHHHHHH-------HTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHH---HHHHHHH
T ss_pred HHHhhHHHHHhHHHHHHHHHHH-------HHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHH---HHHHHHH
Confidence 4555545566655555444333 44555566667788888877654 4679999999999655 2111111
Q ss_pred hhcCC---------CcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhC
Q 042432 113 FEEGE---------PSLEEVKAAFALFDKNEDGFIDASELRNVLCGL 150 (190)
Q Consensus 113 ~~~~~---------~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~ 150 (190)
..... ...--+.-....||.+++|.|+.-.++.++..+
T Consensus 80 ~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 80 LPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp STTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 11111 112244556788999999999999998887643
No 126
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=85.04 E-value=2 Score=35.41 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=43.8
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhh-----hhcCCCcHHHHH-HHHhhhCCCCCCcccHHHHHHHHHh
Q 042432 78 AINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGL-----FEEGEPSLEEVK-AAFALFDKNEDGFIDASELRNVLCG 149 (190)
Q Consensus 78 ~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~-----~~~~~~~~~~l~-~~F~~~D~~~~G~I~~~El~~~l~~ 149 (190)
.|...|.|+||.++-.|+..++.. ++..++..- +.......-+++ -+.+..|.|.|..||.+||...-..
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtk--ELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTK--ELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHH--HHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 678889999999999999888742 222222000 000000011122 3567889999999999999876544
No 127
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=84.23 E-value=10 Score=25.42 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHh-------CCCCC---CCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCG-------LSLAE---ASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~-------~~~~~---~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
.++++.+|+.+ .|.+|.++...|...|+. +|... -.+..++..|.... ..-.|+-++|+.+|..
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHh
Confidence 35788899998 588999999998888763 22111 04666888888773 4567999999999864
No 128
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=82.21 E-value=3.6 Score=37.09 Aligned_cols=74 Identities=22% Similarity=0.204 Sum_probs=52.0
Q ss_pred HHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHH
Q 042432 103 AGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCE 179 (190)
Q Consensus 103 ~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~E 179 (190)
..+..++..+.... .+..-+...|..+|.+++|.|+..+|-..|..+.... .-+-+.-+|+.+|++++ ..+.+|
T Consensus 538 ~~f~~~f~~l~pw~-~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~-~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 538 AQFLEVFRELLPWA-VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGD-ALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred hhHHHHhhccCchh-HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhh-HHHHHHHHHhhccCCcc-cccccc
Confidence 34444444444433 4456778899999999999999999999888765443 33446678888888887 666554
No 129
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=79.55 E-value=8.5 Score=36.23 Aligned_cols=38 Identities=16% Similarity=0.064 Sum_probs=31.9
Q ss_pred cCCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHH
Q 042432 65 KNIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEEL 102 (190)
Q Consensus 65 ~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l 102 (190)
...++....+++..|+.+|....|..+.+++.+++..+
T Consensus 739 k~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl 776 (890)
T KOG0035|consen 739 KGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSL 776 (890)
T ss_pred cchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhc
Confidence 34445556789999999999999999999999999665
No 130
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=72.53 E-value=7.9 Score=34.72 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhhcchhhHHHHHHhh-----hhHhHHHHHh---hhccCCCcccHHHHHHHHhHHcCCCCCcccHHHHH
Q 042432 25 LIILNCLIILRDISSSFHCVFRVFSGI-----FSNIKKKIQL---CADKNIVNKEPEAAESAINAEDSGREKMMTVEEVR 96 (190)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~ 96 (190)
++.++.+.+..-..+..|+.++.|.-- -+..-..+.- -....++..-++.+..+|..||.|+||.++.+|+.
T Consensus 259 FLfL~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~ 338 (625)
T KOG1707|consen 259 FLFLNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELK 338 (625)
T ss_pred hHHHHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHH
Confidence 566777777666666666666554421 1111100000 01344455667789999999999999999999999
Q ss_pred HHHHHH
Q 042432 97 MTMEEL 102 (190)
Q Consensus 97 ~~l~~l 102 (190)
.+....
T Consensus 339 ~LF~~~ 344 (625)
T KOG1707|consen 339 DLFSTA 344 (625)
T ss_pred HHhhhC
Confidence 998543
No 131
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.98 E-value=3.1 Score=35.10 Aligned_cols=65 Identities=23% Similarity=0.331 Sum_probs=48.2
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHH
Q 042432 119 SLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKL 183 (190)
Q Consensus 119 ~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~ 183 (190)
..+.++.+|+.+|+.+.|+|+-.-++.++..+.......+.+.-+=..+|+.+-|.|-.++|+.-
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccc
Confidence 46799999999999999999999999999988754423444554444567666677766665543
No 132
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.51 E-value=1.9 Score=40.50 Aligned_cols=64 Identities=23% Similarity=0.350 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
.....++|...|.+.+|+|+..+....+...|. ....+..++...|..+.|.+++.+|.-.+..
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl---~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLPFGL---SKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHHHHHHhccccCCCcccccccccccccCCC---ChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 456667899999999999999999999988664 5677889999999999999999998866543
No 133
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=70.24 E-value=14 Score=26.39 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=19.7
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHH
Q 042432 75 AESAINAEDSGREKMMTVEEVRMTME 100 (190)
Q Consensus 75 ~~~~F~~~D~d~~G~I~~~E~~~~l~ 100 (190)
+..+...||++++|.|+.-.++.++.
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 55578899999999999999998874
No 134
>PLN02222 phosphoinositide phospholipase C 2
Probab=69.51 E-value=20 Score=32.36 Aligned_cols=67 Identities=18% Similarity=0.325 Sum_probs=50.5
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCC-CCCCHHHHHHHHHhcCC-CCCCceeHHHHHHHHhhh
Q 042432 119 SLEEVKAAFALFDKNEDGFIDASELRNVLCGLSL-AEASEAECTNMITSFDD-DKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 119 ~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~-~~~~~~e~~~~~~~~D~-d~dG~I~~~EF~~~l~~~ 187 (190)
...++..+|..+-. ++.++.++|..+|..... ...+.+.+..++..+.. ...+.++++.|..+|...
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 45689999998853 479999999999987653 22366778888887632 245679999999998753
No 135
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.45 E-value=11 Score=34.40 Aligned_cols=79 Identities=20% Similarity=0.366 Sum_probs=59.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhC---C-----CCCCCHH
Q 042432 87 EKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGL---S-----LAEASEA 158 (190)
Q Consensus 87 ~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~---~-----~~~~~~~ 158 (190)
+| |+++|+. . .....+..++..|..+|. ++|.++.+|+..++... + ... ..+
T Consensus 2 ~~-~~~~~~~--~---------------~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 61 (646)
T KOG0039|consen 2 EG-ISFQELK--I---------------TDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQ-TEE 61 (646)
T ss_pred CC-cchhhhc--c---------------cCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhh-hhH
Confidence 56 8888888 2 234567899999999997 99999999998887642 1 122 444
Q ss_pred HHHHHHHhcCCCCCCceeHHHHHHHHh
Q 042432 159 ECTNMITSFDDDKDGRIDFCEFVKLLD 185 (190)
Q Consensus 159 e~~~~~~~~D~d~dG~I~~~EF~~~l~ 185 (190)
....++...|.++.|.+.++++..++.
T Consensus 62 ~~~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 62 YAALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred HHHHhhhhccccccceeeecchhHHHH
Confidence 567788899999989888887776665
No 136
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=68.34 E-value=35 Score=29.77 Aligned_cols=95 Identities=20% Similarity=0.233 Sum_probs=55.4
Q ss_pred ccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHH-HHHHHHHHhhhhc-------CCCcHHHHHHHH-------hhhCCCC
Q 042432 70 KEPEAAESAINAEDSGREKMMTVEEVRMTMEEL-AGLEEKIDGLFEE-------GEPSLEEVKAAF-------ALFDKNE 134 (190)
Q Consensus 70 ~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l-~e~~~~~~~~~~~-------~~~~~~~l~~~F-------~~~D~~~ 134 (190)
++...+..++ .+-....+.-+.+||...+... +++.+.+...... ....+..+.++. -.||.++
T Consensus 286 ~~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~p~L~~~~~~~~~~~~V~hQaK~~~e~~lEkIiAf~aL~~M~FD~ER 364 (445)
T PF13608_consen 286 KEEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVNPELLEFAEEMIEEEEVEHQAKTASEKNLEKIIAFVALLMMMFDAER 364 (445)
T ss_pred HHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcCchHHHHHHHHhCCCcEEecCCChHHHHHHHHHHHHHHHHHHhCchh
Confidence 3344567777 6766778899999999999887 4444444332211 111223333322 2478887
Q ss_pred CCcc--cHHHHHHHHHhCCCCC--CCHHHHHHHHH
Q 042432 135 DGFI--DASELRNVLCGLSLAE--ASEAECTNMIT 165 (190)
Q Consensus 135 ~G~I--~~~El~~~l~~~~~~~--~~~~e~~~~~~ 165 (190)
+..+ ..+.|+.++..++..+ .+-+++..+++
T Consensus 365 SD~VyKiLnKlK~v~st~~~~V~hQSLDdi~~~~e 399 (445)
T PF13608_consen 365 SDCVYKILNKLKGVFSTMGQDVRHQSLDDIEDIFE 399 (445)
T ss_pred hHHHHHHHHHHHHHHhccCCCccCCCccchhhhhh
Confidence 7655 3567888888777543 13344544443
No 137
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=68.26 E-value=15 Score=28.18 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=46.6
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHH-HHHHHHhCCCCCCCHHH-HH
Q 042432 84 SGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASE-LRNVLCGLSLAEASEAE-CT 161 (190)
Q Consensus 84 ~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~E-l~~~l~~~~~~~~~~~e-~~ 161 (190)
.|=||+||.++....+..- --..+++.+ ++.--++.||..+ |-.++..++.+ .+| ++
T Consensus 8 sDFDGTITl~Ds~~~itdt---------------f~~~e~k~l---~~~vls~tiS~rd~~g~mf~~i~~s---~~Eile 66 (220)
T COG4359 8 SDFDGTITLNDSNDYITDT---------------FGPGEWKAL---KDGVLSKTISFRDGFGRMFGSIHSS---LEEILE 66 (220)
T ss_pred ecCCCceEecchhHHHHhc---------------cCchHHHHH---HHHHhhCceeHHHHHHHHHHhcCCC---HHHHHH
Confidence 4568999999998888321 112233333 3344567787655 66677666644 344 44
Q ss_pred HHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 162 NMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 162 ~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
-+.+.+..+. .+.||.++...
T Consensus 67 ~llk~i~Idp----~fKef~e~ike 87 (220)
T COG4359 67 FLLKDIKIDP----GFKEFVEWIKE 87 (220)
T ss_pred HHHhhcccCc----cHHHHHHHHHH
Confidence 4555465554 57777777654
No 138
>PLN02228 Phosphoinositide phospholipase C
Probab=68.19 E-value=29 Score=31.31 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=51.0
Q ss_pred CcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCC-CCCCHHHHHHHHHhcCCC----CCCceeHHHHHHHHhhhh
Q 042432 118 PSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSL-AEASEAECTNMITSFDDD----KDGRIDFCEFVKLLDRSF 188 (190)
Q Consensus 118 ~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~-~~~~~~e~~~~~~~~D~d----~dG~I~~~EF~~~l~~~~ 188 (190)
....++..+|..+-. ++.++.++|..+|..... ...+.+.+.+++..+... ..|.++.+.|..+|....
T Consensus 21 ~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~~ 94 (567)
T PLN02228 21 EPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSDT 94 (567)
T ss_pred CCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCcc
Confidence 356789999998853 368999999999987643 222556688888877543 346799999999987543
No 139
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=67.26 E-value=4.4 Score=29.44 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=28.7
Q ss_pred CCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcC-------CCCCCceeHHHHHHHHhhhhC
Q 042432 135 DGFIDASELRNVLCGLSLAEASEAECTNMITSFD-------DDKDGRIDFCEFVKLLDRSFS 189 (190)
Q Consensus 135 ~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D-------~d~dG~I~~~EF~~~l~~~~~ 189 (190)
-+.|++.||.+.=+-+.+ +..-++++++++. -+.++.|+|+-|..+|..++.
T Consensus 5 ~~~lsp~eF~qLq~y~ey---s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe 63 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY---STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLE 63 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH-------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT
T ss_pred eeccCHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHc
Confidence 467888887775443322 2224555666553 233457999999999987763
No 140
>PLN02230 phosphoinositide phospholipase C 4
Probab=67.08 E-value=29 Score=31.51 Aligned_cols=68 Identities=12% Similarity=0.207 Sum_probs=48.5
Q ss_pred CcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCC-CC-CCCHHHHHHHHHhcC-------CCCCCceeHHHHHHHHhh
Q 042432 118 PSLEEVKAAFALFDKNEDGFIDASELRNVLCGLS-LA-EASEAECTNMITSFD-------DDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 118 ~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~-~~-~~~~~e~~~~~~~~D-------~d~dG~I~~~EF~~~l~~ 186 (190)
....+++.+|..|-.++ +.++.++|..+|.... .. ..+.+++..++..+- .-+.+.++.+.|..+|..
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 35679999999996444 8999999999998765 22 225566677775431 113356999999998864
No 141
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=66.11 E-value=11 Score=18.02 Aligned_cols=17 Identities=6% Similarity=0.135 Sum_probs=12.7
Q ss_pred cCCCCCcccHHHHHHHH
Q 042432 83 DSGREKMMTVEEVRMTM 99 (190)
Q Consensus 83 D~d~~G~I~~~E~~~~l 99 (190)
|.|+||.|+.-++...-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 67999999988876544
No 142
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=64.93 E-value=44 Score=23.21 Aligned_cols=55 Identities=16% Similarity=0.269 Sum_probs=43.1
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHH
Q 042432 123 VKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKL 183 (190)
Q Consensus 123 l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~ 183 (190)
+..+|-+++.-++-..+..+++++|...|... +++.++.++..+. |+ +.+|.+.-
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~-d~e~i~~visel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEI-DDERINLVLSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCccc-CHHHHHHHHHHhc----CC-CHHHHHHH
Confidence 34577788888888899999999999999987 8888988888774 33 56665543
No 143
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=61.72 E-value=39 Score=24.52 Aligned_cols=68 Identities=19% Similarity=0.245 Sum_probs=36.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCC-------CCCCcccHHHHHHHHHh-CCCCCCCHHH
Q 042432 88 KMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDK-------NEDGFIDASELRNVLCG-LSLAEASEAE 159 (190)
Q Consensus 88 G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~-------~~~G~I~~~El~~~l~~-~~~~~~~~~e 159 (190)
+.|+..||.++=.-+ ... ...++.+.+.|.. +..+.|+.+-|+.+|+. +...+ .++-
T Consensus 6 ~~lsp~eF~qLq~y~-----------eys---~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~-P~~l 70 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYS-----------EYS---TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDL-PEDL 70 (138)
T ss_dssp S-S-HHHHHHHHHHH-----------HH-------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S---HHH
T ss_pred eccCHHHHHHHHHHH-----------HHH---HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCC-CHHH
Confidence 568888887766433 111 1233333333322 33569999999999987 44554 6777
Q ss_pred HHHHHHhcCCC
Q 042432 160 CTNMITSFDDD 170 (190)
Q Consensus 160 ~~~~~~~~D~d 170 (190)
+..+|..+-..
T Consensus 71 c~hLF~sF~~~ 81 (138)
T PF14513_consen 71 CQHLFLSFQKK 81 (138)
T ss_dssp HHHHHHHS---
T ss_pred HHHHHHHHhCc
Confidence 88999887543
No 144
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=61.52 E-value=8.1 Score=25.96 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=24.6
Q ss_pred CCcccHHHHHHHHHhCC--CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 135 DGFIDASELRNVLCGLS--LAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 135 ~G~I~~~El~~~l~~~~--~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
||.++..|...+-..+. ..+ ++++...++..+....+...++.+|.+.+.+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGL-DAEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 56666666444332211 112 44455555554444333445566666655543
No 145
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=61.21 E-value=36 Score=23.22 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=34.2
Q ss_pred HHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhC---CCCCCcccHHHHHHHHH
Q 042432 72 PEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFD---KNEDGFIDASELRNVLC 148 (190)
Q Consensus 72 ~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D---~~~~G~I~~~El~~~l~ 148 (190)
...+.+-|..+-. +|.+...+|..++- ...+.+-..+.|..+- .-..+.|+.+||+.++.
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIG---------------M~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~ 91 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIG---------------MKDSKEFAGELFDALARRRGIKGDSITKDELKEFWE 91 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT-----------------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcC---------------CcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHH
Confidence 4455666777665 78888888888882 2233334444443331 12256788888887775
Q ss_pred hC
Q 042432 149 GL 150 (190)
Q Consensus 149 ~~ 150 (190)
.+
T Consensus 92 qi 93 (100)
T PF08414_consen 92 QI 93 (100)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 146
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=57.57 E-value=22 Score=35.70 Aligned_cols=57 Identities=11% Similarity=0.222 Sum_probs=39.1
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 042432 78 AINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVL 147 (190)
Q Consensus 78 ~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l 147 (190)
.|+.||+|+.|.|+..||.++|..- ...+..++.........+.+...+.++|-.-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-------------k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-------------KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-------------ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 4667799999999999999999422 22233444445555556677777777776654
No 147
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=57.57 E-value=15 Score=23.29 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.7
Q ss_pred HHHHHHHHhHHcCCCCCcccHHHHHHHH
Q 042432 72 PEAAESAINAEDSGREKMMTVEEVRMTM 99 (190)
Q Consensus 72 ~~~~~~~F~~~D~d~~G~I~~~E~~~~l 99 (190)
.+.+.+.|+.+ .++.+.||.+||++.+
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 45678899999 7888999999999998
No 148
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=54.78 E-value=56 Score=23.97 Aligned_cols=63 Identities=11% Similarity=0.146 Sum_probs=42.4
Q ss_pred HhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhC
Q 042432 79 INAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGL 150 (190)
Q Consensus 79 F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~ 150 (190)
|..|-+.+...++-..|.++++.. .++... -+...+.-+|..+-..+...|+.++|..+|..+
T Consensus 8 f~~fG~~~~~~m~~~~F~Kl~kD~--------~i~d~k-~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 8 FASFGKKNGTEMDSKNFAKLCKDC--------GIIDKK-LTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHCSSTSTSSEEEHHHHHHHHHHT--------SS--SS-S-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHhcCCccccccHHHHHHHHHHc--------CCCCCC-CchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 333345555679999999999654 333323 567788888998766667789999999998754
No 149
>PLN02952 phosphoinositide phospholipase C
Probab=54.63 E-value=36 Score=30.90 Aligned_cols=52 Identities=10% Similarity=0.180 Sum_probs=40.3
Q ss_pred CCCcccHHHHHHHHHhCCCCC-CCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 134 EDGFIDASELRNVLCGLSLAE-ASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 134 ~~G~I~~~El~~~l~~~~~~~-~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
+.|.++.+||..+.+.+.... ....++..+|..+..+ .+.++.++|..+|..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHH
Confidence 468999999988877664321 1467899999999654 468999999999865
No 150
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=52.40 E-value=6.8 Score=30.29 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=39.0
Q ss_pred HhhhCCC-CCCcccHHHHHHHHHhCCCCCC-CHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 042432 127 FALFDKN-EDGFIDASELRNVLCGLSLAEA-SEAECTNMITSFDDDKDGRIDFCEFVKLL 184 (190)
Q Consensus 127 F~~~D~~-~~G~I~~~El~~~l~~~~~~~~-~~~e~~~~~~~~D~d~dG~I~~~EF~~~l 184 (190)
|-.+|.. -||+++..||.-+- -+++ .+.-+...|.-.|.|+||.|+.+|+...+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~----ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLR----APLIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCcccccccccccccc----CCcccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 4445643 58999999986532 2221 24447789999999999999999997665
No 151
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=52.26 E-value=58 Score=20.52 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhcC
Q 042432 141 SELRNVLCGLSLAEASEAECTNMITSFD 168 (190)
Q Consensus 141 ~El~~~l~~~~~~~~~~~e~~~~~~~~D 168 (190)
+++..+++..|..+ +..++..+++.-|
T Consensus 17 ~~m~~if~l~~~~v-s~~el~a~lrke~ 43 (68)
T PF07308_consen 17 DDMIEIFALAGFEV-SKAELSAWLRKED 43 (68)
T ss_pred HHHHHHHHHcCCcc-CHHHHHHHHCCCC
Confidence 45566666666665 6666666666544
No 152
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.80 E-value=8.2 Score=36.45 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=56.5
Q ss_pred CCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHH
Q 042432 66 NIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRN 145 (190)
Q Consensus 66 ~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~ 145 (190)
.++......+.++|...|.+.+|.|+..+....+ .. .......+..+....|.++.|.|+.+++.-
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f-------------~~-~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~ 341 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIF-------------LP-FGLSKPRLAHVWLLADTQNTGTLSKDEFAL 341 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCccccccccccc-------------cc-CCCChhhhhhhhhhcchhccCcccccccch
Confidence 4455566778889999999999999999999988 22 345677888999999999999999998766
Q ss_pred HHH
Q 042432 146 VLC 148 (190)
Q Consensus 146 ~l~ 148 (190)
.+.
T Consensus 342 ~~~ 344 (847)
T KOG0998|consen 342 AMH 344 (847)
T ss_pred hhh
Confidence 553
No 153
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=48.23 E-value=44 Score=33.99 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=34.7
Q ss_pred CCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHH
Q 042432 66 NIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEEL 102 (190)
Q Consensus 66 ~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l 102 (190)
.++....+...+++..||++..|.|.+.++...++.+
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L 1446 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSL 1446 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhc
Confidence 6888889999999999999999999999999999877
No 154
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=48.00 E-value=2.5e+02 Score=26.55 Aligned_cols=118 Identities=12% Similarity=0.072 Sum_probs=73.0
Q ss_pred ccCCCcccHHHHHHHHhHHcCCCC-CcccHHHHHHHHHHH-HHHHHHHHhhhhcCCCc-HHHHHHHHhhhCCCCCCcccH
Q 042432 64 DKNIVNKEPEAAESAINAEDSGRE-KMMTVEEVRMTMEEL-AGLEEKIDGLFEEGEPS-LEEVKAAFALFDKNEDGFIDA 140 (190)
Q Consensus 64 ~~~~~~~~~~~~~~~F~~~D~d~~-G~I~~~E~~~~l~~l-~e~~~~~~~~~~~~~~~-~~~l~~~F~~~D~~~~G~I~~ 140 (190)
...+..-.+.-+.++|...+-.++ -.....+...++..+ +-+.+....+.. .... ...+.-..++||..++|.|..
T Consensus 411 ~l~ldlv~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~-v~l~vD~~lN~llNvyD~~R~g~irv 489 (966)
T KOG4286|consen 411 ALCLDLLSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVN-VPLCVDMCLNWLLNVYDTGRTGRIRV 489 (966)
T ss_pred HHHhccccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccc-cchHHHHHHHHHHHhcccCCCcceEE
Confidence 344455556667788888886544 457777777777555 111222111111 1111 234556678999999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 042432 141 SELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLL 184 (190)
Q Consensus 141 ~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l 184 (190)
-+|+-.+..+.... .++.+..+|.....++.-.+ ...|--++
T Consensus 490 ls~ki~~i~lck~~-leek~~ylF~~vA~~~sq~~-q~~l~lLL 531 (966)
T KOG4286|consen 490 LSFKIGIISLCKAH-LEDKYRYLFKQVASSTSQCD-QRRLGLLL 531 (966)
T ss_pred eeehhhHHHHhcch-hHHHHHHHHHHHcCchhhHH-HHHHHHHH
Confidence 99999888776655 56677799998875554333 44444433
No 155
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=44.59 E-value=1.8e+02 Score=27.97 Aligned_cols=87 Identities=14% Similarity=0.205 Sum_probs=55.6
Q ss_pred HcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhC--CCCCCcccHH-----HHHHHHHhCCCCC
Q 042432 82 EDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFD--KNEDGFIDAS-----ELRNVLCGLSLAE 154 (190)
Q Consensus 82 ~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D--~~~~G~I~~~-----El~~~l~~~~~~~ 154 (190)
+..|..|.|....+.+.+. ... ....+..+....- .+++..|..+ .|..++..+....
T Consensus 157 mqvn~~grip~knI~k~F~-------------~~k--~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR~ 221 (1189)
T KOG1265|consen 157 MQVNFEGRIPVKNIIKTFS-------------ADK--KEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPRP 221 (1189)
T ss_pred hcccccccccHHHHHHHhh-------------cCC--chhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCch
Confidence 4556677777766666662 111 1234444444332 3444556555 4667777777554
Q ss_pred CCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 155 ASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 155 ~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
+++++|..+..++.-.++.++++.++.+.
T Consensus 222 ----eie~iF~ki~~~~kpylT~~ql~dfln~~ 250 (1189)
T KOG1265|consen 222 ----EIEEIFRKISGKKKPYLTKEQLVDFLNKK 250 (1189)
T ss_pred ----hHHHHHHHhccCCCccccHHHHHHHHhhh
Confidence 89999999987777789999999998753
No 156
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=42.47 E-value=1.1e+02 Score=20.92 Aligned_cols=61 Identities=18% Similarity=0.333 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCC---CCCCceeHHHHHHHHhh
Q 042432 120 LEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDD---DKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 120 ~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~---d~dG~I~~~EF~~~l~~ 186 (190)
...+..-|..+-+ +|++.+..|-.++ |.+. +.+-..++|..... -....|+.+|...+...
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~d-SkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECI---GMKD-SKEFAGELFDALARRRGIKGDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S--HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhc---CCcc-cHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHH
Confidence 5677777887766 8999999999987 5554 66667777775421 12457999988776643
No 157
>PLN02223 phosphoinositide phospholipase C
Probab=41.96 E-value=1e+02 Score=27.72 Aligned_cols=67 Identities=6% Similarity=-0.106 Sum_probs=47.3
Q ss_pred cHHHHHHHHhhhCCCCCCcccHHHHHHHH---HhC-CCCCCCHHHHHHHHHhcCCC--------CCCceeHHHHHHHHhh
Q 042432 119 SLEEVKAAFALFDKNEDGFIDASELRNVL---CGL-SLAEASEAECTNMITSFDDD--------KDGRIDFCEFVKLLDR 186 (190)
Q Consensus 119 ~~~~l~~~F~~~D~~~~G~I~~~El~~~l---~~~-~~~~~~~~e~~~~~~~~D~d--------~dG~I~~~EF~~~l~~ 186 (190)
..+.++.+|..+- .+.|.++.+.+.+++ ... |....+.++++.+++.+-.. ..+.++.+.|..+|..
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4578999999994 678999999999988 433 22223566666666654221 2256999999999865
No 158
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=41.37 E-value=68 Score=18.31 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhh
Q 042432 140 ASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRS 187 (190)
Q Consensus 140 ~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~ 187 (190)
.+|...+|..+|+ ++.++...+..+.. ....+-++.++.--+.
T Consensus 3 ~~d~~~AL~~LGy---~~~e~~~av~~~~~--~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 3 LEDALEALISLGY---SKAEAQKAVSKLLE--KPGMDVEELIKQALKL 45 (47)
T ss_dssp HHHHHHHHHHTTS----HHHHHHHHHHHHH--STTS-HHHHHHHHHCC
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHhhc--CCCCCHHHHHHHHHhh
Confidence 3677888889997 46777777777753 2345667666554443
No 159
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=41.15 E-value=60 Score=20.26 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=28.6
Q ss_pred CCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhc
Q 042432 134 EDGFIDASELRNVLCGLSLAEASEAECTNMITSF 167 (190)
Q Consensus 134 ~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~ 167 (190)
++..|+.+-++..+..+|.++ ++..++.+++..
T Consensus 28 ~NPpine~mir~M~~QMG~kp-Sekqi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKP-SEKQIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHH
Confidence 467899999999999999998 999999888764
No 160
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=41.03 E-value=1.1e+02 Score=20.34 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=20.2
Q ss_pred cccHHHHHHHHHhCCCCCCCHHHHHHHHHhc
Q 042432 137 FIDASELRNVLCGLSLAEASEAECTNMITSF 167 (190)
Q Consensus 137 ~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~ 167 (190)
.||.+||.++.+..+.++ +..+++.+...+
T Consensus 14 ~iT~~eLlkyskqy~i~i-t~~QA~~I~~~l 43 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISI-TKKQAEQIANIL 43 (85)
T ss_pred cCCHHHHHHHHHHhCCCC-CHHHHHHHHHHH
Confidence 467777777777777776 766666665544
No 161
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=40.12 E-value=28 Score=24.06 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=46.3
Q ss_pred hHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHh---CCCCCCC
Q 042432 80 NAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCG---LSLAEAS 156 (190)
Q Consensus 80 ~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~---~~~~~~~ 156 (190)
+.||+..+-.||.+++...+..- +-|++.|.....-||+.=|.+++.. -|.+.++
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g----------------------~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp 67 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREG----------------------REFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLS 67 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCC----------------------CeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence 56899999999999999999321 2366777555556777777666543 2444446
Q ss_pred HHHHHHHHHhcCCC
Q 042432 157 EAECTNMITSFDDD 170 (190)
Q Consensus 157 ~~e~~~~~~~~D~d 170 (190)
..-+..++...+..
T Consensus 68 ~~~L~qlIr~yg~~ 81 (107)
T TIGR01848 68 TDFLTQIIRFYGGS 81 (107)
T ss_pred HHHHHHHHHHhChh
Confidence 66677777766543
No 162
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=40.07 E-value=37 Score=21.11 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=30.8
Q ss_pred CCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCC
Q 042432 134 EDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDK 171 (190)
Q Consensus 134 ~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~ 171 (190)
.++.++..++.+.+...|+.+ +++.+...+..++.+|
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~-se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEEL-SEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhh-hHHHHHHHHHHHHHCC
Confidence 457899999999999888887 8888988888887654
No 163
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=38.96 E-value=97 Score=21.64 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=38.5
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHH
Q 042432 125 AAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVK 182 (190)
Q Consensus 125 ~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~ 182 (190)
.+|-+.-.-++..+|.+++++++...|..+ .+..+..+++.+.. .+.+|.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveV-d~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADV-EDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCc-cHHHHHHHHHHHcC-----CCHHHHHH
Confidence 456666667788899999999999999987 77777777776641 35555554
No 164
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=38.37 E-value=1.6e+02 Score=21.49 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHH-----------hcCCCCCCceeHHHHHHH
Q 042432 142 ELRNVLCGLSLAEASEAECTNMIT-----------SFDDDKDGRIDFCEFVKL 183 (190)
Q Consensus 142 El~~~l~~~~~~~~~~~e~~~~~~-----------~~D~d~dG~I~~~EF~~~ 183 (190)
=+.+-+..+|..+ +++|+..++. .+ .+..|..+...|.++
T Consensus 94 ll~~e~eklGi~V-s~~El~d~l~~g~~p~~~~~~~f-~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 94 LLEQEFEKLGITV-SDDELQDMLNQGTNPMLQQNPFF-NPQTGQFDRAKLKQF 144 (145)
T ss_pred HHHHHHHHhCCcc-CHHHHHHHHhcCCCchhhhcccc-CcccCCcCHHHHHhh
Confidence 3444555677776 7777766661 23 346788888777655
No 165
>PLN02228 Phosphoinositide phospholipase C
Probab=38.26 E-value=1.8e+02 Score=26.43 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=44.7
Q ss_pred cHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCC----CCCcccHHHHHHH
Q 042432 71 EPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKN----EDGFIDASELRNV 146 (190)
Q Consensus 71 ~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~----~~G~I~~~El~~~ 146 (190)
-..++..+|..+-.+ +.++.++|.+.|... -.......+.+..+|..+... ..|.++.+.|..+
T Consensus 22 ~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~----------Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~y 89 (567)
T PLN02228 22 PPVSIKRLFEAYSRN--GKMSFDELLRFVSEV----------QGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRY 89 (567)
T ss_pred CcHHHHHHHHHhcCC--CccCHHHHHHHHHHh----------cCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHH
Confidence 456677888887543 579999999988543 111123345666777766432 3477999999998
Q ss_pred HHh
Q 042432 147 LCG 149 (190)
Q Consensus 147 l~~ 149 (190)
|..
T Consensus 90 l~s 92 (567)
T PLN02228 90 LFS 92 (567)
T ss_pred hcC
Confidence 854
No 166
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=38.06 E-value=67 Score=18.24 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=9.7
Q ss_pred CceeHHHHHHHHhhhhC
Q 042432 173 GRIDFCEFVKLLDRSFS 189 (190)
Q Consensus 173 G~I~~~EF~~~l~~~~~ 189 (190)
.+++..||..++.+.++
T Consensus 23 ~~Lsk~Elk~Ll~~Elp 39 (44)
T PF01023_consen 23 DTLSKKELKELLEKELP 39 (44)
T ss_dssp TSEEHHHHHHHHHHHST
T ss_pred CeEcHHHHHHHHHHHHH
Confidence 35666666666655443
No 167
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=37.27 E-value=19 Score=22.44 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=28.6
Q ss_pred hHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 042432 80 NAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVL 147 (190)
Q Consensus 80 ~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l 147 (190)
+.||+..+..|+.+++...++. ..-|+..|....--||+.-|.+++
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~----------------------g~~~~V~D~ktgeDiT~~iL~QIi 55 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE----------------------GEDFKVVDAKTGEDITRSILLQII 55 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC----------------------CCeEEEEECCCCcccHHHHHHHHH
Confidence 4577777778888887777731 123666665544456666555554
No 168
>PRK00523 hypothetical protein; Provisional
Probab=37.05 E-value=73 Score=20.38 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=29.2
Q ss_pred CCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhc
Q 042432 134 EDGFIDASELRNVLCGLSLAEASEAECTNMITSF 167 (190)
Q Consensus 134 ~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~ 167 (190)
++..|+.+-++..+..+|.++ ++..++.+++..
T Consensus 36 ~NPpine~mir~M~~QMGqKP-Sekki~Q~m~~m 68 (72)
T PRK00523 36 ENPPITENMIRAMYMQMGRKP-SESQIKQVMRSV 68 (72)
T ss_pred HCcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHH
Confidence 467899999999999999998 999999988876
No 169
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=36.69 E-value=72 Score=23.64 Aligned_cols=84 Identities=13% Similarity=0.100 Sum_probs=44.5
Q ss_pred HHHHHHhHH----cCCCCCc-ccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q 042432 74 AAESAINAE----DSGREKM-MTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLC 148 (190)
Q Consensus 74 ~~~~~F~~~----D~d~~G~-I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~ 148 (190)
.+.+.|+.| |+..+|+ ++-..+..++... .+.....-.--...-+|..+--..-+.|+.++|+.+|.
T Consensus 13 ~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc--------~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ 84 (180)
T KOG4070|consen 13 GLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDC--------KVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALE 84 (180)
T ss_pred hHHHHHHHHHHcCCccccccccccccHHHHHhhc--------CcccCCcccccccceeeeeccccccccccHHHHHHHHH
Confidence 344445544 4444553 5666666666432 11111111122333466666566678899999999987
Q ss_pred hCC-----CCCCCHHHHHHHHHh
Q 042432 149 GLS-----LAEASEAECTNMITS 166 (190)
Q Consensus 149 ~~~-----~~~~~~~e~~~~~~~ 166 (190)
.+. -+. .+++++.+.+.
T Consensus 85 ela~~R~k~Ks-~ee~l~~I~~l 106 (180)
T KOG4070|consen 85 ELATKRFKGKS-KEEALDAICQL 106 (180)
T ss_pred HHHHhhhcCCC-HHHHHHHHHHH
Confidence 664 122 45555555443
No 170
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=36.43 E-value=87 Score=20.72 Aligned_cols=12 Identities=17% Similarity=0.456 Sum_probs=5.7
Q ss_pred eeHHHHHHHHhh
Q 042432 175 IDFCEFVKLLDR 186 (190)
Q Consensus 175 I~~~EF~~~l~~ 186 (190)
.++.+|...+..
T Consensus 53 ~~~~~~~~~l~~ 64 (106)
T cd07316 53 FGLEEYARQFRR 64 (106)
T ss_pred CCHHHHHHHHHH
Confidence 344555554444
No 171
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.07 E-value=79 Score=20.10 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=29.1
Q ss_pred CCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcC
Q 042432 134 EDGFIDASELRNVLCGLSLAEASEAECTNMITSFD 168 (190)
Q Consensus 134 ~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D 168 (190)
++..|+.+-++..+...|.++ ++..++++++.+-
T Consensus 35 ~NPpine~~iR~M~~qmGqKp-Se~kI~Qvm~~i~ 68 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKP-SEKKINQVMRSII 68 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCc-hHHHHHHHHHHHH
Confidence 467899999999999999998 9999998887653
No 172
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=34.69 E-value=1.2e+02 Score=19.23 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=13.5
Q ss_pred CCCcccHHHHHHHHHHH
Q 042432 86 REKMMTVEEVRMTMEEL 102 (190)
Q Consensus 86 ~~G~I~~~E~~~~l~~l 102 (190)
..|++..+||...+..+
T Consensus 27 ~~Gkv~~ee~n~~~e~~ 43 (75)
T TIGR02675 27 ASGKLRGEEINSLLEAL 43 (75)
T ss_pred HcCcccHHHHHHHHHHh
Confidence 67889999998888554
No 173
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=34.55 E-value=1.8e+02 Score=27.31 Aligned_cols=95 Identities=12% Similarity=0.109 Sum_probs=60.5
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHH-------HHHHH
Q 042432 75 AESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASE-------LRNVL 147 (190)
Q Consensus 75 ~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~E-------l~~~l 147 (190)
+.-+.+.||+.++|.|..-+|+-++-.+ . .....+.++..|+..-..+.-.+ ... +.++.
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~l-----------c-k~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqip 538 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISL-----------C-KAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIP 538 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHH-----------h-cchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHH
Confidence 4556889999999999999999998544 2 22345677788887754444433 333 33333
Q ss_pred Hh------CCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHh
Q 042432 148 CG------LSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLD 185 (190)
Q Consensus 148 ~~------~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~ 185 (190)
+. +|... -+-.++..|+. .++.-.|++..|..++.
T Consensus 539 r~lGE~aAfGgsN-vepsvrsCF~~--v~~~pei~~~~f~dw~~ 579 (966)
T KOG4286|consen 539 RQLGEVAAFGGSN-IEPSVRSCFQF--VNNKPEIEAALFLDWMR 579 (966)
T ss_pred HHHhHHHhhcCCC-CChHHHHHHHh--cCCCCcchHHHHHHHhc
Confidence 33 33322 23346677773 34445799999988875
No 174
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=34.52 E-value=1.6e+02 Score=20.43 Aligned_cols=56 Identities=14% Similarity=0.249 Sum_probs=40.1
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhh
Q 042432 125 AAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDR 186 (190)
Q Consensus 125 ~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~ 186 (190)
.+|-+.-..++..+|.++++++++..|..+ ....+..+++.+.. .+.+|.+.--..
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveV-e~~~~~lf~~~L~G-----Kdi~eLIa~g~~ 60 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEV-DDEKLNKVISELEG-----KDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCc-cHHHHHHHHHHHcC-----CCHHHHHHHhHh
Confidence 455666667888999999999999999987 66667766666631 356666654443
No 175
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=34.01 E-value=1.4e+02 Score=19.75 Aligned_cols=48 Identities=21% Similarity=0.176 Sum_probs=34.0
Q ss_pred CcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 042432 136 GFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLL 184 (190)
Q Consensus 136 G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l 184 (190)
-.+...+|+..|.....-. +..+...+=.-+|...+|.||-=||--+.
T Consensus 21 ~IVPW~~F~~~L~~~h~~~-~~~~~~aLk~TiDlT~n~~iS~FeFdvFt 68 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPIS-SGLEAMALKSTIDLTCNDYISNFEFDVFT 68 (85)
T ss_dssp SEEEHHHHHHHHHHHS--S-SHHHHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCC-chHHHHHHHHHHhcccCCccchhhhHHHH
Confidence 5689999999998754333 45566666667899999999988886543
No 176
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=32.91 E-value=86 Score=19.15 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=24.0
Q ss_pred CcccHHHHHHHHHhCCCCCCCHHHHHHHHHhc
Q 042432 136 GFIDASELRNVLCGLSLAEASEAECTNMITSF 167 (190)
Q Consensus 136 G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~ 167 (190)
-.+|.+||...+..++..+ +..++-.++..+
T Consensus 8 ~~lTeEEl~~~i~~L~~~~-~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIP-NRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCC-CHHHHHHHHHHH
Confidence 4578889999999888877 777777776655
No 177
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=32.70 E-value=46 Score=17.57 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=10.2
Q ss_pred CCceeHHHHHHHHhh
Q 042432 172 DGRIDFCEFVKLLDR 186 (190)
Q Consensus 172 dG~I~~~EF~~~l~~ 186 (190)
.|+|+++|++.+..+
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 467777777776654
No 178
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.32 E-value=66 Score=27.72 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=37.7
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHH
Q 042432 125 AAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVK 182 (190)
Q Consensus 125 ~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~ 182 (190)
+.|-.+. --+|+|+-..-++.+-.... ....+-++++.+|.|.||.++-+||.-
T Consensus 448 e~fy~l~-p~~gk~sg~~ak~~mv~skl---pnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 448 EIFYTLS-PVNGKLSGRNAKKEMVKSKL---PNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hhhhccc-ccCceeccchhHHHHHhccC---chhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 3444443 23677877766666544443 344677899999999999999999963
No 179
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=30.63 E-value=54 Score=30.12 Aligned_cols=71 Identities=18% Similarity=0.160 Sum_probs=47.6
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCC-------------------
Q 042432 75 AESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNED------------------- 135 (190)
Q Consensus 75 ~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~------------------- 135 (190)
.++++..+|-+.++..++.++......+ -+.+.+....-.....+....|...|.+++
T Consensus 439 ~~~~~s~~d~~~~fk~sf~~~~~l~~~F---~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~ 515 (975)
T KOG2419|consen 439 AKRILSIVDYEEDFKLSFSEFSDLSFAF---GNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFL 515 (975)
T ss_pred hhhcccccccccCceEeeehHHHHHHHH---HHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccc
Confidence 4667888999999999999998888554 222211111001112345567888888888
Q ss_pred ----CcccHHHHHHHHH
Q 042432 136 ----GFIDASELRNVLC 148 (190)
Q Consensus 136 ----G~I~~~El~~~l~ 148 (190)
|.++.+|+-..+.
T Consensus 516 ~~s~~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 516 KKSFGVVTVDELVALLA 532 (975)
T ss_pred ccccCeeEHHHHHHHHH
Confidence 9999999887765
No 180
>PRK01844 hypothetical protein; Provisional
Probab=29.61 E-value=1.1e+02 Score=19.60 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=29.0
Q ss_pred CCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhc
Q 042432 134 EDGFIDASELRNVLCGLSLAEASEAECTNMITSF 167 (190)
Q Consensus 134 ~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~ 167 (190)
++..|+.+-++..+...|.++ ++..++.+++..
T Consensus 35 ~NPpine~mir~Mm~QMGqkP-Sekki~Q~m~~m 67 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMGQKP-SQKKINQMMSAM 67 (72)
T ss_pred HCCCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHH
Confidence 467899999999999999998 999999888876
No 181
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=29.36 E-value=58 Score=26.05 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=18.8
Q ss_pred HHhHHcCCCCCcccHHHHHHHH
Q 042432 78 AINAEDSGREKMMTVEEVRMTM 99 (190)
Q Consensus 78 ~F~~~D~d~~G~I~~~E~~~~l 99 (190)
....||.||||-.+.++-+-+|
T Consensus 44 kL~iYDaDGDGDFDveDAKVLL 65 (243)
T PF05279_consen 44 KLGIYDADGDGDFDVEDAKVLL 65 (243)
T ss_pred hheeeeccCCCccccccccccc
Confidence 3488999999999998887777
No 182
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=29.10 E-value=1.2e+02 Score=25.43 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=24.4
Q ss_pred CCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 042432 135 DGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLL 184 (190)
Q Consensus 135 ~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l 184 (190)
.|.||++|-...++...... .++.++.+++.++ |+-+||.+++
T Consensus 300 ~G~itReeal~~v~~~d~~~-~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEF-PKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccc-cHHHHHHHHHHhC------CCHHHHHHHh
Confidence 57777777666665532222 3455666666665 4556665544
No 183
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=28.79 E-value=1.9e+02 Score=20.07 Aligned_cols=55 Identities=9% Similarity=0.228 Sum_probs=36.4
Q ss_pred hhhCCCCCCcccHHHHHHHHHh----------CCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 042432 128 ALFDKNEDGFIDASELRNVLCG----------LSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLL 184 (190)
Q Consensus 128 ~~~D~~~~G~I~~~El~~~l~~----------~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l 184 (190)
+.||...+-+||.+++.+..+. .|..+ +..-+..++-+-..++...++-. |++-+
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDi-T~~iL~QII~E~E~~g~~~lp~~-~L~ql 74 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDL-TRSILLQIIAEEESGGEPVLSTD-FLTQI 74 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchh-HHHHHHHHHHHHHhCCCCCCCHH-HHHHH
Confidence 4689999999999999998864 34544 55556666665555555555543 44333
No 184
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=28.45 E-value=1e+02 Score=23.44 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=24.1
Q ss_pred CCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcC
Q 042432 131 DKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFD 168 (190)
Q Consensus 131 D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D 168 (190)
..+.+|++..++|.+.+..-+... +.+++.++...-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~-t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWV-TEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT---HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCC-CHHHHHHHHhhCC
Confidence 468899999999999988877765 8889998887644
No 185
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=27.94 E-value=41 Score=21.36 Aligned_cols=14 Identities=36% Similarity=0.446 Sum_probs=7.0
Q ss_pred CCceeHHHHHHHHh
Q 042432 172 DGRIDFCEFVKLLD 185 (190)
Q Consensus 172 dG~I~~~EF~~~l~ 185 (190)
.++|+.+||+..++
T Consensus 39 ~~kIsR~~fvr~lR 52 (70)
T PF12174_consen 39 KKKISREEFVRKLR 52 (70)
T ss_pred HCCCCHHHHHHHHH
Confidence 34555555555444
No 186
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=27.60 E-value=84 Score=26.52 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=45.0
Q ss_pred HhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhhh
Q 042432 127 FALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRSF 188 (190)
Q Consensus 127 F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~~ 188 (190)
...+|..+.|.++.--.+-++..+.... -.+.+..+|..+. |..|.+.+-.|..++++.+
T Consensus 116 LaA~ds~~~g~~~vfavkialatlc~gk-~~dklryIfs~is-ds~gim~~i~~~~fl~evl 175 (434)
T KOG4301|consen 116 LAAEDSEGQGKQQVFAVKIALATLCGGK-IKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVL 175 (434)
T ss_pred HhhcCccCCCCceeecchhhhhhhccch-HHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHH
Confidence 3467999999999998888887765432 3556777888776 5678888888888777654
No 187
>PF11410 Antifungal_pept: Antifungal peptide; InterPro: IPR024206 This peptide has six cysteines involved in three disulphide bonds. The presence of a 'disulphide through disulphide knot' structurally defines this protein as a knottin: the peptide contains a global fold which involves a cysteine-knotted three-stranded antiparallel beta-sheet along with a flexible loop and four beta-reverse turns. It also has an amphiphilic character which is the main structural basis of its biological function []. The peptides in this entry belong to the AMP family. ; PDB: 1DKC_A 1Q3J_A.
Probab=27.51 E-value=25 Score=19.25 Aligned_cols=10 Identities=50% Similarity=1.122 Sum_probs=4.8
Q ss_pred CCcccccccc
Q 042432 7 DSIPACCSHF 16 (190)
Q Consensus 7 ~~~~~~~~~~ 16 (190)
.|.++|||.|
T Consensus 12 gs~g~CcSg~ 21 (36)
T PF11410_consen 12 GSMGNCCSGF 21 (36)
T ss_dssp SSS---TTSE
T ss_pred CCCcccccce
Confidence 4678899865
No 188
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=27.23 E-value=1.2e+02 Score=28.38 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=46.0
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHhhhh
Q 042432 121 EEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFDDDKDGRIDFCEFVKLLDRSF 188 (190)
Q Consensus 121 ~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D~d~dG~I~~~EF~~~l~~~~ 188 (190)
...+.+|+..-+.+.-++..+.+...+ .+++.+..+..++...++.|++..|.....+-|
T Consensus 404 ~aA~~iF~nv~~p~~~~i~ld~~~~f~--------~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~~ 463 (714)
T KOG4629|consen 404 IAARKIFKNVAKPGVILIDLDDLLRFM--------GDEEAERAFSLFEGASDENITRSSFKEWIVNIY 463 (714)
T ss_pred HHHHHHHhccCCCCccchhhhhhhhcC--------CHHHHHHHHHhhhhhcccCccHHHHHHHHHHHH
Confidence 455677887777777788777777654 678888888888877677799999998876654
No 189
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=27.09 E-value=2.6e+02 Score=24.53 Aligned_cols=68 Identities=18% Similarity=0.093 Sum_probs=44.9
Q ss_pred CcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 042432 68 VNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVL 147 (190)
Q Consensus 68 ~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l 147 (190)
.+-..+.++.+-+.+|.|.+|.|+.+|=...|+.= +... .....-.+.|.- .|..|+.++|=.++
T Consensus 63 dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEd----------mky~-~~~~kr~~~fH~----dD~~ItVedLWeaW 127 (575)
T KOG4403|consen 63 DKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRED----------MKYR-DSTRKRSEKFHG----DDKHITVEDLWEAW 127 (575)
T ss_pred chhhHHHHHHHHHhcccccCCCcccccchHHHHHH----------hhcc-cchhhhhhhccC----CccceeHHHHHHHH
Confidence 34456789999999999999999999987777431 1111 122222334543 46678888887776
Q ss_pred HhC
Q 042432 148 CGL 150 (190)
Q Consensus 148 ~~~ 150 (190)
...
T Consensus 128 ~~S 130 (575)
T KOG4403|consen 128 KES 130 (575)
T ss_pred Hhh
Confidence 543
No 190
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=26.55 E-value=72 Score=22.37 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=6.8
Q ss_pred ccCCCcccHHHHHHHH
Q 042432 64 DKNIVNKEPEAAESAI 79 (190)
Q Consensus 64 ~~~~~~~~~~~~~~~F 79 (190)
++.++..|...+.+++
T Consensus 37 DG~v~~~E~~~i~~~~ 52 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLL 52 (140)
T ss_dssp TSS--CHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4445555555444444
No 191
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=26.12 E-value=70 Score=20.67 Aligned_cols=31 Identities=10% Similarity=0.261 Sum_probs=17.6
Q ss_pred CCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhc
Q 042432 134 EDGFIDASELRNVLCGLSLAEASEAECTNMITSF 167 (190)
Q Consensus 134 ~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~ 167 (190)
..|+||.+|+..+|.... . +.+.+..++..+
T Consensus 18 ~~G~lT~~eI~~~L~~~~--~-~~e~id~i~~~L 48 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD--L-DPEQIDEIYDTL 48 (82)
T ss_dssp HHSS-BHHHHHHH-S-S------HHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCccC--C-CHHHHHHHHHHH
Confidence 467888888888876433 2 566677766654
No 192
>PLN02222 phosphoinositide phospholipase C 2
Probab=25.51 E-value=3.1e+02 Score=25.02 Aligned_cols=66 Identities=11% Similarity=0.183 Sum_probs=42.2
Q ss_pred HHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCC-CCCCcccHHHHHHHHHh
Q 042432 72 PEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDK-NEDGFIDASELRNVLCG 149 (190)
Q Consensus 72 ~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~-~~~G~I~~~El~~~l~~ 149 (190)
..++..+|..+-. ++.++.++|.+.|... -.......+....+++.+.. .+.+.++.+.|..+|..
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~----------Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDV----------QKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHh----------cCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 3467788888854 4799999999998543 11111234455555655422 23566888888888854
No 193
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=23.30 E-value=1.1e+02 Score=18.79 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=19.5
Q ss_pred cccHHHHHHHHHhCCCCCCCHHHHHH
Q 042432 137 FIDASELRNVLCGLSLAEASEAECTN 162 (190)
Q Consensus 137 ~I~~~El~~~l~~~~~~~~~~~e~~~ 162 (190)
.|+.++|..+|+...-.+ +.+++.+
T Consensus 29 ~it~~DF~~Al~~~kpSV-s~~dl~~ 53 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSV-SQEDLKK 53 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS--HHHHHH
T ss_pred CCCHHHHHHHHHHcCCCC-CHHHHHH
Confidence 588999999999888776 7777654
No 194
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=23.27 E-value=2e+02 Score=23.10 Aligned_cols=57 Identities=16% Similarity=0.231 Sum_probs=43.0
Q ss_pred ccCCCcccHHHHHHHHhHHcCCCCCcccHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHhhhCCCCCCcccH
Q 042432 64 DKNIVNKEPEAAESAINAEDSGREKMMTVEEVRMTMEELAGLEEKIDGLFEEGEPSLEEVKAAFALFDKNEDGFIDA 140 (190)
Q Consensus 64 ~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l~e~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~ 140 (190)
...++-.|.+.++++++.++.| +|.++..++...+ .-+...++++++.+- ..|.|..
T Consensus 174 i~tLSySEleAv~~IL~~L~~~-egrlse~eLAerl-----------------GVSRs~ireAlrkLE--~aGvIe~ 230 (251)
T TIGR02787 174 INTLSYSELEAVEHIFEELDGN-EGLLVASKIADRV-----------------GITRSVIVNALRKLE--SAGVIES 230 (251)
T ss_pred HHhccHhHHHHHHHHHHHhccc-cccccHHHHHHHH-----------------CCCHHHHHHHHHHHH--HCCCEEe
Confidence 5678889999999999998633 6899999998888 345667888888764 3455543
No 195
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.92 E-value=1.4e+02 Score=16.08 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=5.6
Q ss_pred HHHHHHHHhCCC
Q 042432 141 SELRNVLCGLSL 152 (190)
Q Consensus 141 ~El~~~l~~~~~ 152 (190)
++|+..|..-|+
T Consensus 7 ~~L~~wL~~~gi 18 (38)
T PF10281_consen 7 SDLKSWLKSHGI 18 (38)
T ss_pred HHHHHHHHHcCC
Confidence 444444444443
No 196
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.83 E-value=88 Score=26.76 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=27.4
Q ss_pred HHHHHHHHhHHcCCCCCcccHHHHHHHHHHH
Q 042432 72 PEAAESAINAEDSGREKMMTVEEVRMTMEEL 102 (190)
Q Consensus 72 ~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~l 102 (190)
-+.++++|+.+|+.+.|.|+-.-+..++..+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~ 338 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTAL 338 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHh
Confidence 4668999999999999999999999988655
No 197
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=22.52 E-value=1.4e+02 Score=20.62 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=14.7
Q ss_pred cHHHHHHHHHhCCCCCCCHHHHHHHHHh
Q 042432 139 DASELRNVLCGLSLAEASEAECTNMITS 166 (190)
Q Consensus 139 ~~~El~~~l~~~~~~~~~~~e~~~~~~~ 166 (190)
+.+|++.++...+... +++++++++..
T Consensus 80 ~~dElrai~~~~~~~~-~~e~l~~ILd~ 106 (112)
T PRK14981 80 TRDELRAIFAKERYTL-SPEELDEILDI 106 (112)
T ss_pred CHHHHHHHHHHhccCC-CHHHHHHHHHH
Confidence 3556666655554444 55565555543
No 198
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=22.24 E-value=2.7e+02 Score=19.43 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=31.1
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcC
Q 042432 126 AFALFDKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFD 168 (190)
Q Consensus 126 ~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D 168 (190)
+|-+.-..++-.+|.+++++++...|..+ ....+..+++.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvev-d~~~~~~f~~~L~ 47 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADA-DDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcc-cHHHHHHHHHHHc
Confidence 44445456677899999999999999886 6666666666653
No 199
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=22.20 E-value=2e+02 Score=17.56 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=18.8
Q ss_pred hhcCCCcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhCCCCCCCHHHHH
Q 042432 113 FEEGEPSLEEVKAAFALFDKNEDGFIDASELRNVLCGLSLAEASEAECT 161 (190)
Q Consensus 113 ~~~~~~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~ 161 (190)
.....-+.++.+.+|..+= +|.++..++-.+|..+..+-.+.+|+-
T Consensus 10 ~~g~~Ls~~e~~~~~~~i~---~g~~s~~qiaAfL~al~~kget~~Eia 55 (66)
T PF02885_consen 10 RDGEDLSREEAKAAFDAIL---DGEVSDAQIAAFLMALRMKGETPEEIA 55 (66)
T ss_dssp HTT----HHHHHHHHHHHH---TTSS-HHHHHHHHHHHHHH---HHHHH
T ss_pred HcCCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 4444445556666665442 355555655555544322212455543
No 200
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=22.02 E-value=2e+02 Score=21.75 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=28.3
Q ss_pred CCCCCCcccHHHHHHHHHhCCCCCCCHHHHHHHHHhcC
Q 042432 131 DKNEDGFIDASELRNVLCGLSLAEASEAECTNMITSFD 168 (190)
Q Consensus 131 D~~~~G~I~~~El~~~l~~~~~~~~~~~e~~~~~~~~D 168 (190)
..|.+|++..++|.+.++.-+... +.+++.++...-|
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~-t~~~l~~vV~~d~ 63 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWV-TRELLEAVVESDD 63 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCC-CHHHHHHHHHcCC
Confidence 357899999999999887555455 8888888776433
No 201
>PHA02105 hypothetical protein
Probab=21.55 E-value=2.1e+02 Score=17.51 Aligned_cols=47 Identities=9% Similarity=0.051 Sum_probs=25.3
Q ss_pred cccHHHHHHHHHhCC---CCCCCHHHHHHHHHhcCCCCC--CceeHHHHHHHH
Q 042432 137 FIDASELRNVLCGLS---LAEASEAECTNMITSFDDDKD--GRIDFCEFVKLL 184 (190)
Q Consensus 137 ~I~~~El~~~l~~~~---~~~~~~~e~~~~~~~~D~d~d--G~I~~~EF~~~l 184 (190)
+++++|++.++..-. +++ ..+.++.+=..+....= -.++|+||-..|
T Consensus 4 klt~~~~~~a~~~ndq~eyp~-~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPV-ELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccc-cHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 467788888776432 333 33334443333443322 358888887654
No 202
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.81 E-value=1.2e+02 Score=21.26 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=22.9
Q ss_pred cHHHHHHHHHhCCCCCCCHHHHHHHHHhcC
Q 042432 139 DASELRNVLCGLSLAEASEAECTNMITSFD 168 (190)
Q Consensus 139 ~~~El~~~l~~~~~~~~~~~e~~~~~~~~D 168 (190)
|.+|++.++..-+..+ +++++++++.-.+
T Consensus 81 t~~ElRsIla~e~~~~-s~E~l~~Ildiv~ 109 (114)
T COG1460 81 TPDELRSILAKERVML-SDEELDKILDIVD 109 (114)
T ss_pred CHHHHHHHHHHccCCC-CHHHHHHHHHHHH
Confidence 6788999998888887 8888888776543
No 203
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=20.70 E-value=3.2e+02 Score=19.38 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=27.6
Q ss_pred CcHHHHHHHHhhhCCCCCCcccHHHHHHHHHhC-CCCCCCHHHHHHHHHh
Q 042432 118 PSLEEVKAAFALFDKNEDGFIDASELRNVLCGL-SLAEASEAECTNMITS 166 (190)
Q Consensus 118 ~~~~~l~~~F~~~D~~~~G~I~~~El~~~l~~~-~~~~~~~~e~~~~~~~ 166 (190)
.-.+.+..+|+.|- +|.|+.+.+...+... |..+ +..++..+...
T Consensus 34 tf~~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~L-T~~Qi~Yl~~~ 79 (122)
T PF06648_consen 34 TFLDKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKL-TRSQIDYLYNR 79 (122)
T ss_pred hHHHHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhc-CHHHHHHHHHH
Confidence 34567777777775 3557777777777655 3444 66665544443
No 204
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=20.53 E-value=1.8e+02 Score=19.12 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=16.2
Q ss_pred ccHHHHHHHHHhCCCCCCCHHHHHHH
Q 042432 138 IDASELRNVLCGLSLAEASEAECTNM 163 (190)
Q Consensus 138 I~~~El~~~l~~~~~~~~~~~e~~~~ 163 (190)
|+.++++++.+.....+ +++++..+
T Consensus 1 i~~~~v~~lA~La~L~l-~eee~~~~ 25 (93)
T TIGR00135 1 ISDEEVKHLAKLARLEL-SEEEAESF 25 (93)
T ss_pred CCHHHHHHHHHHhCCCC-CHHHHHHH
Confidence 46677777777667666 66665433
No 205
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=20.17 E-value=1.7e+02 Score=17.10 Aligned_cols=14 Identities=29% Similarity=0.378 Sum_probs=12.5
Q ss_pred CCCcccHHHHHHHH
Q 042432 86 REKMMTVEEVRMTM 99 (190)
Q Consensus 86 ~~G~I~~~E~~~~l 99 (190)
..|.|+..+|+..+
T Consensus 7 ~~~~itv~~~rd~l 20 (50)
T PF09107_consen 7 KNGEITVAEFRDLL 20 (50)
T ss_dssp TTSSBEHHHHHHHH
T ss_pred cCCcCcHHHHHHHH
Confidence 37899999999999
Done!