BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042434
(517 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 148/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V+FS NGE+LASSS+D IW + + T+ H+ +S VAWS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 78
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
D L++ + + LK+WDV +G C T H V C + P S +V GS D I+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
G +K P V + DG ++S D RI + G + +I +++
Sbjct: 139 VKT-GMCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
P++ + S + K + ++ +WD + GK K YTGH KY I + F G +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 254
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
I SGSE++ +YIWN + + ++ L GH+ V + +P ++ASA+ +D TI++W
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 311
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H + V V F+ +G + SSS D IW S LK + PVSFV
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVK 202
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
+SP+ +L LKLWD G C T+ H
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGH 236
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 17/216 (7%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H N V+ F+ + S S D S IW V + + LK TL +H +PVS V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--KTGMCLK-TLPAHSDPVSAVH 159
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEK 333
++ D + +++ + ++WD +G C T D VS + P+ K ++ + D +
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDL 219
Query: 334 GIFMCDCDGNEIKAWRGTRIPK---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI 390
++ G +K + G + K + +VT G+ ++S D + I NL T + ++
Sbjct: 220 KLWDYS-KGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNMVYIWNLQT--KEIV 275
Query: 391 SEEHPITSLSVSVDC---KNFIVNL---NSQEIHMW 420
+ T + +S C +N I + N + I +W
Sbjct: 276 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 7/153 (4%)
Query: 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNE-VWFVQFSNNGEYLASSSSDCSAIIWKV 251
S + S Y+ C D + ++ L + N V FV+FS NG+Y+ +++ D +W
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW-- 222
Query: 252 LEDSKLTLKHTLRSHQNP--VSFVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGDH 308
+ SK T H+N F +S K + G+ + ++ +W+++T H
Sbjct: 223 -DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341
+V S A P + + + +K I + D
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKLWKSD 314
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 149/300 (49%), Gaps = 20/300 (6%)
Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
+ +Q LT H + VW V FS +G+ +AS+S D + +W + L TL H + V
Sbjct: 48 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVRG 103
Query: 273 VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332
VA+SPD + + + + +KLW+ G T H V A+ PD + + S D
Sbjct: 104 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD-- 160
Query: 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL-GTYAERVIS 391
K + + + +G ++ G V +A +PDG+ + S DK +++ N G + +
Sbjct: 161 KTVKLWNRNGQLLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 219
Query: 392 EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ--NKYVIRSCFGGL 449
+ ++ S D + + + + +W+ G+ + TGHS N R
Sbjct: 220 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVNGVAFRP----- 272
Query: 450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
DG IAS S++ + +WN RN + ++ L+GHS +V V+++P + +ASASDD T+++W
Sbjct: 273 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLW 330
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 147/298 (49%), Gaps = 16/298 (5%)
Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
+ +Q LT H + VW V FS +G+ +AS+S D + +W + TL H + V
Sbjct: 294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW----NRNGQHLQTLTGHSSSVWG 349
Query: 273 VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332
VA+SPD + + + + +KLW+ G T H V A+ PD + + S D
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD-- 406
Query: 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL-GTYAERVIS 391
K + + + +G ++ G V +A +PD + + S DK +++ N G + +
Sbjct: 407 KTVKLWNRNGQLLQTLTG-HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTG 465
Query: 392 EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG 451
+ ++ S D + + + + +W+ G+ + TGHS + +R DG
Sbjct: 466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSS---VRGVAFSPDG 520
Query: 452 TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
IAS S++ + +WNR N + ++ L+GHS +V V+++P + +ASAS D T+++W
Sbjct: 521 QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD-GQTIASASSDKTVKLW 576
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/298 (27%), Positives = 148/298 (49%), Gaps = 16/298 (5%)
Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
+ +Q LT H + V V F +G+ +AS+S D + +W + L TL H + V
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVWG 308
Query: 273 VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332
VA+SPD + + + + +KLW+ G T H V A+ PD + + S D
Sbjct: 309 VAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDD-- 365
Query: 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL-GTYAERVIS 391
K + + + +G ++ G V +A +PDG+ + S DK +++ N G + +
Sbjct: 366 KTVKLWNRNGQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 424
Query: 392 EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG 451
+ ++ S D + + + + +W+ G+ + TGHS + +R DG
Sbjct: 425 HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTL--TGHSSS---VRGVAFSPDG 479
Query: 452 TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
IAS S++ + +WN RN + ++ L+GHS +V V+++P + +ASASDD T+++W
Sbjct: 480 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLW 535
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 127/251 (50%), Gaps = 12/251 (4%)
Query: 260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFP 319
++ L +H + V VA+SPD + + + + +KLW+ G T H V A+ P
Sbjct: 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 67
Query: 320 DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI 379
D + + S D K + + + +G ++ G V +A +PDG+ + S DK +++
Sbjct: 68 DGQTIASASDD--KTVKLWNRNGQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKL 124
Query: 380 LNL-GTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN 438
N G + + + ++ S D + + + + +W+ G+ + TGHS +
Sbjct: 125 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSS 182
Query: 439 KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLA 498
+ + F DG IAS S++ + +WN RN + ++ L+GHS +V V+++P + +A
Sbjct: 183 VWGV--AF-SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPD-GQTIA 237
Query: 499 SASDDHTIRIW 509
SASDD T+++W
Sbjct: 238 SASDDKTVKLW 248
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 119/254 (46%), Gaps = 14/254 (5%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
+Q LT H + VW V FS +G+ +AS+S D + +W + L TL H + V VA
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVRGVA 392
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKG 334
+SPD + + + + +KLW+ G T H V A+ PD + + S D K
Sbjct: 393 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD--KT 449
Query: 335 IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL-GTYAERVISEE 393
+ + + +G ++ G V +A +PDG+ + S DK +++ N G + +
Sbjct: 450 VKLWNRNGQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 508
Query: 394 HPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
+ ++ S D + + + + +W+ G+ + TGHS + + + F DG
Sbjct: 509 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVWGV--AF-SPDGQT 563
Query: 454 IASGSENSQIYIWN 467
IAS S + + +WN
Sbjct: 564 IASASSDKTVKLWN 577
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 8/169 (4%)
Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
+ +Q LT H + VW V FS + + +AS+S D + +W + L TL H + V
Sbjct: 417 QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVRG 472
Query: 273 VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332
VA+SPD + + + + +KLW+ G T H V A+ PD + + S D
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD-- 529
Query: 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILN 381
K + + + +G ++ G V +A +PDG+ + S SDK +++ N
Sbjct: 530 KTVKLWNRNGQLLQTLTG-HSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 98/210 (46%), Gaps = 9/210 (4%)
Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
+ +Q LT H + V V FS +G+ +AS+S D + +W + L TL H + V
Sbjct: 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVWG 431
Query: 273 VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332
VA+SPDD + + + + +KLW+ G T H V A+ PD + + S D
Sbjct: 432 VAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD-- 488
Query: 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL-GTYAERVIS 391
K + + + +G ++ G V +A +PDG+ + S DK +++ N G + +
Sbjct: 489 KTVKLWNRNGQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 547
Query: 392 EEHPITSLSVSVDCKNFIVNLNSQEIHMWD 421
+ ++ S D + + + + +W+
Sbjct: 548 HSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V+FS NGE+LASSS+D IW + + T+ H+ +S VAWS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 81
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
D L++ + + LK+WDV +G C T H V C + P S +V GS D I+
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
G +K P V + DG ++S D RI + G + +I +++
Sbjct: 142 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
P++ + S + K + + +WD + GK K YTGH KY I + F G +
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 257
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
I SGSE++ +YIWN + + ++ L GH+ V + +P ++ASA+ +D TI++W
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 314
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H + V V F+ +G + SSS D IW S LK + PVSFV
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVK 205
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
+SP+ +L LKLWD G C T+ H
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H N V+ F+ + S S D S IW V L TL +H +PVS V
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVH 162
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEK 333
++ D + +++ + ++WD +G C T D VS + P+ K ++ + D
Sbjct: 163 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 334 GIFMCDCDGNEIKAWRGTRIPK---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI 390
++ G +K + G + K + +VT G+ ++S D + I NL T + ++
Sbjct: 223 KLWDYS-KGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQT--KEIV 278
Query: 391 SEEHPITSLSVSVDC---KNFIVNL---NSQEIHMW 420
+ T + +S C +N I + N + I +W
Sbjct: 279 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNE-VWFVQFSNNGEYLASSSSDCSAIIWKV 251
S + S Y+ C D + ++ L + N V FV+FS NG+Y+ +++ D + +W
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-- 225
Query: 252 LEDSKLTLKHTLRSHQNPVS--FVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGDH 308
+ SK T H+N F +S K + G+ + ++ +W+++T H
Sbjct: 226 -DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341
+V S A P + + + +K I + D
Sbjct: 285 TDVVISTACHPTENIIASAALENDKTIKLWKSD 317
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V+FS NGE+LASSS+D IW + + T+ H+ +S VAWS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 81
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
D L++ + + LK+WDV +G C T H V C + P S +V GS D I+
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
G +K P V + DG ++S D RI + G + +I +++
Sbjct: 142 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
P++ + S + K + + +WD + GK K YTGH KY I + F G +
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 257
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
I SGSE++ +YIWN + + ++ L GH+ V + +P ++ASA+ +D TI++W
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 314
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H + V V F+ +G + SSS D IW S LK + PVSFV
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVK 205
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
+SP+ +L LKLWD G C T+ H
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H N V+ F+ + S S D S IW V L TL +H +PVS V
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVH 162
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEK 333
++ D + +++ + ++WD +G C T D VS + P+ K ++ + D
Sbjct: 163 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 334 GIFMCDCDGNEIKAWRGTRIPK---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI 390
++ G +K + G + K + +VT G+ ++S D + I NL T + ++
Sbjct: 223 KLWDYS-KGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQT--KEIV 278
Query: 391 SEEHPITSLSVSVDC---KNFIVNL---NSQEIHMW 420
+ T + +S C +N I + N + I +W
Sbjct: 279 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNE-VWFVQFSNNGEYLASSSSDCSAIIWKV 251
S + S Y+ C D + ++ L + N V FV+FS NG+Y+ +++ D + +W
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-- 225
Query: 252 LEDSKLTLKHTLRSHQNPVS--FVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGDH 308
+ SK T H+N F +S K + G+ + ++ +W+++T H
Sbjct: 226 -DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341
+V S A P + + + +K I + D
Sbjct: 285 TDVVISTACHPTENIIASAALENDKTIKLWKSD 317
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V+FS NGE+LASSS+D IW + + T+ H+ +S VAWS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 75
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
D L++ + + LK+WDV +G C T H V C + P S +V GS D I+
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
G +K P V + DG ++S D RI + G + +I +++
Sbjct: 136 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
P++ + S + K + + +WD + GK K YTGH KY I + F G +
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 251
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
I SGSE++ +YIWN + + ++ L GH+ V + +P ++ASA+ +D TI++W
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 308
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H + V V F+ +G + SSS D IW S LK + PVSFV
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVK 199
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
+SP+ +L LKLWD G C T+ H
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H N V+ F+ + S S D S IW V L TL +H +PVS V
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVH 156
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEK 333
++ D + +++ + ++WD +G C T D VS + P+ K ++ + D
Sbjct: 157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 334 GIFMCDCDGNEIKAWRGTRIPK---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI 390
++ G +K + G + K + +VT G+ ++S D + I NL T + ++
Sbjct: 217 KLWDYS-KGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQT--KEIV 272
Query: 391 SEEHPITSLSVSVDC---KNFIVNL---NSQEIHMW 420
+ T + +S C +N I + N + I +W
Sbjct: 273 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNE-VWFVQFSNNGEYLASSSSDCSAIIWKV 251
S + S Y+ C D + ++ L + N V FV+FS NG+Y+ +++ D + +W
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-- 219
Query: 252 LEDSKLTLKHTLRSHQNPVS--FVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGDH 308
+ SK T H+N F +S K + G+ + ++ +W+++T H
Sbjct: 220 -DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341
+V S A P + + + +K I + D
Sbjct: 279 TDVVISTACHPTENIIASAALENDKTIKLWKSD 311
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V+FS NGE+LASSS+D IW + + T+ H+ +S VAWS
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 76
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
D L++ + + LK+WDV +G C T H V C + P S +V GS D I+
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
G +K P V + DG ++S D RI + G + +I +++
Sbjct: 137 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 194
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
P++ + S + K + + +WD + GK K YTGH KY I + F G +
Sbjct: 195 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 252
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
I SGSE++ +YIWN + + ++ L GH+ V + +P ++ASA+ +D TI++W
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 309
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H + V V F+ +G + SSS D IW S LK + PVSFV
Sbjct: 143 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVK 200
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
+SP+ +L LKLWD G C T+ H
Sbjct: 201 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 234
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H N V+ F+ + S S D S IW V L TL +H +PVS V
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVH 157
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEK 333
++ D + +++ + ++WD +G C T D VS + P+ K ++ + D
Sbjct: 158 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 217
Query: 334 GIFMCDCDGNEIKAWRGTRIPK---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI 390
++ G +K + G + K + +VT G+ ++S D + I NL T + ++
Sbjct: 218 KLWDYS-KGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQT--KEIV 273
Query: 391 SEEHPITSLSVSVDC---KNFIVNL---NSQEIHMW 420
+ T + +S C +N I + N + I +W
Sbjct: 274 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNE-VWFVQFSNNGEYLASSSSDCSAIIWKV 251
S + S Y+ C D + ++ L + N V FV+FS NG+Y+ +++ D + +W
Sbjct: 163 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-- 220
Query: 252 LEDSKLTLKHTLRSHQNPVS--FVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGDH 308
+ SK T H+N F +S K + G+ + ++ +W+++T H
Sbjct: 221 -DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 279
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341
+V S A P + + + +K I + D
Sbjct: 280 TDVVISTACHPTENIIASAALENDKTIKLWKSD 312
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V+FS NGE+LASSS+D IW + + T+ H+ +S VAWS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 75
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
D L++ + + LK+WDV +G C T H V C + P S +V GS D I+
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
G +K P V + DG ++S D RI + G + +I +++
Sbjct: 136 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
P++ + S + K + + +WD + GK K YTGH KY I + F G +
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 251
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
I SGSE++ +YIWN + + ++ L GH+ V + +P ++ASA+ +D TI++W
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 308
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H + V V F+ +G + SSS D IW S LK + PVSFV
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVK 199
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
+SP+ +L LKLWD G C T+ H
Sbjct: 200 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H N V+ F+ + S S D S IW V L TL +H +PVS V
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVH 156
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEK 333
++ D + +++ + ++WD +G C T D VS + P+ K ++ + D
Sbjct: 157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216
Query: 334 GIFMCDCDGNEIKAWRGTRIPK---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI 390
++ G +K + G + K + +VT G+ ++S D + I NL T + ++
Sbjct: 217 KLWDYS-KGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQT--KEIV 272
Query: 391 SEEHPITSLSVSVDC---KNFIVNL---NSQEIHMW 420
+ T + +S C +N I + N + I +W
Sbjct: 273 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNE-VWFVQFSNNGEYLASSSSDCSAIIWKV 251
S + S Y+ C D + ++ L + N V FV+FS NG+Y+ +++ D + +W
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-- 219
Query: 252 LEDSKLTLKHTLRSHQNPVS--FVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGDH 308
+ SK T H+N F +S K + G+ + ++ +W+++T H
Sbjct: 220 -DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341
+V S A P + + + +K I + D
Sbjct: 279 TDVVISTACHPTENIIASAALENDKTIKLWKSD 311
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V+FS NGE+LASSS+D IW + + T+ H+ +S VAWS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 81
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
D L++ + + LK+WDV +G C T H V C + P S +V GS D I+
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
G +K P V + DG ++S D RI + G + +I +++
Sbjct: 142 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
P++ + S + K + + +WD + GK K YTGH KY I + F G +
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 257
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
I SGSE++ +YIWN + + ++ L GH+ V + +P ++ASA+ +D TI++W
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 314
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H + V V F+ +G + SSS D IW S LK + PVSFV
Sbjct: 148 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVK 205
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
+SP+ +L LKLWD G C T+ H
Sbjct: 206 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H N V+ F+ + S S D S IW V L TL +H +PVS V
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVH 162
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEK 333
++ D + +++ + ++WD +G C T D VS + P+ K ++ + D
Sbjct: 163 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 222
Query: 334 GIFMCDCDGNEIKAWRGTRIPK---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI 390
++ G +K + G + K + +VT G+ ++S D + I NL T + ++
Sbjct: 223 KLWDYS-KGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQT--KEIV 278
Query: 391 SEEHPITSLSVSVDC---KNFIVNL---NSQEIHMW 420
+ T + +S C +N I + N + I +W
Sbjct: 279 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNE-VWFVQFSNNGEYLASSSSDCSAIIWKV 251
S + S Y+ C D + ++ L + N V FV+FS NG+Y+ +++ D + +W
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-- 225
Query: 252 LEDSKLTLKHTLRSHQNPVS--FVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGDH 308
+ SK T H+N F +S K + G+ + ++ +W+++T H
Sbjct: 226 -DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341
+V S A P + + + +K I + D
Sbjct: 285 TDVVISTACHPTENIIASAALENDKTIKLWKSD 317
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V+FS NGE+LASSS+D IW + + T+ H+ +S VAWS
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 92
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
D L++ + + LK+WDV +G C T H V C + P S +V GS D I+
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
G +K P V + DG ++S D RI + G + +I +++
Sbjct: 153 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 210
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
P++ + S + K + + +WD + GK K YTGH KY I + F G +
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 268
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
I SGSE++ +YIWN + + ++ L GH+ V + +P ++ASA+ +D TI++W
Sbjct: 269 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 325
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H + V V F+ +G + SSS D IW S LK + PVSFV
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVK 216
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
+SP+ +L LKLWD G C T+ H
Sbjct: 217 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 250
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H N V+ F+ + S S D S IW V L TL +H +PVS V
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVH 173
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEK 333
++ D + +++ + ++WD +G C T D VS + P+ K ++ + D
Sbjct: 174 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 233
Query: 334 GIFMCDCDGNEIKAWRGTRIPK---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI 390
++ G +K + G + K + +VT G+ ++S D + I NL T + ++
Sbjct: 234 KLWDYS-KGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQT--KEIV 289
Query: 391 SEEHPITSLSVSVDC---KNFIVNL---NSQEIHMW 420
+ T + +S C +N I + N + I +W
Sbjct: 290 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNE-VWFVQFSNNGEYLASSSSDCSAIIWKV 251
S + S Y+ C D + ++ L + N V FV+FS NG+Y+ +++ D + +W
Sbjct: 179 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-- 236
Query: 252 LEDSKLTLKHTLRSHQNPVS--FVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGDH 308
+ SK T H+N F +S K + G+ + ++ +W+++T H
Sbjct: 237 -DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 295
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341
+V S A P + + + +K I + D
Sbjct: 296 TDVVISTACHPTENIIASAALENDKTIKLWKSD 328
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V+FS NGE+LASSS+D IW + + T+ H+ +S VAWS
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 80
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
D L++ + + LK+WDV +G C T H V C + P S +V GS D I+
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
G +K P V + DG ++S D RI + G + +I +++
Sbjct: 141 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 198
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
P++ + S + K + + +WD + GK K YTGH KY I + F G +
Sbjct: 199 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 256
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
I SGSE++ +YIWN + + ++ L GH+ V + +P ++ASA+ +D TI++W
Sbjct: 257 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 313
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H + V V F+ +G + SSS D IW S LK + PVSFV
Sbjct: 147 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVK 204
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
+SP+ +L LKLWD G C T+ H
Sbjct: 205 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 238
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H N V+ F+ + S S D S IW V L TL +H +PVS V
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVH 161
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEK 333
++ D + +++ + ++WD +G C T D VS + P+ K ++ + D
Sbjct: 162 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 221
Query: 334 GIFMCDCDGNEIKAWRGTRIPK---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI 390
++ G +K + G + K + +VT G+ ++S D + I NL T + ++
Sbjct: 222 KLWDYS-KGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQT--KEIV 277
Query: 391 SEEHPITSLSVSVDC---KNFIVNL---NSQEIHMW 420
+ T + +S C +N I + N + I +W
Sbjct: 278 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNE-VWFVQFSNNGEYLASSSSDCSAIIWKV 251
S + S Y+ C D + ++ L + N V FV+FS NG+Y+ +++ D + +W
Sbjct: 167 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-- 224
Query: 252 LEDSKLTLKHTLRSHQNPVS--FVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGDH 308
+ SK T H+N F +S K + G+ + ++ +W+++T H
Sbjct: 225 -DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 283
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341
+V S A P + + + +K I + D
Sbjct: 284 TDVVISTACHPTENIIASAALENDKTIKLWKSD 316
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V+FS NGE+LASSS+D IW + + T+ H+ +S VAWS
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 71
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
D L++ + + LK+WDV +G C T H V C + P S +V GS D I+
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
G +K P V + DG ++S D RI + G + +I +++
Sbjct: 132 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 189
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
P++ + S + K + + +WD + GK K YTGH KY I + F G +
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 247
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
I SGSE++ +YIWN + + ++ L GH+ V + +P ++ASA+ +D TI++W
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 304
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H + V V F+ +G + SSS D IW S LK + PVSFV
Sbjct: 138 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVK 195
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
+SP+ +L LKLWD G C T+ H
Sbjct: 196 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 229
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H N V+ F+ + S S D S IW V L TL +H +PVS V
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVH 152
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEK 333
++ D + +++ + ++WD +G C T D VS + P+ K ++ + D
Sbjct: 153 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 212
Query: 334 GIFMCDCDGNEIKAWRGTRIPK---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI 390
++ G +K + G + K + +VT G+ ++S D + I NL T + ++
Sbjct: 213 KLWDYS-KGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQT--KEIV 268
Query: 391 SEEHPITSLSVSVDC---KNFIVNL---NSQEIHMW 420
+ T + +S C +N I + N + I +W
Sbjct: 269 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNE-VWFVQFSNNGEYLASSSSDCSAIIWKV 251
S + S Y+ C D + ++ L + N V FV+FS NG+Y+ +++ D + +W
Sbjct: 158 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-- 215
Query: 252 LEDSKLTLKHTLRSHQNP--VSFVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGDH 308
+ SK T H+N F +S K + G+ + ++ +W+++T H
Sbjct: 216 -DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 274
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341
+V S A P + + + +K I + D
Sbjct: 275 TDVVISTACHPTENIIASAALENDKTIKLWKSD 307
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V+FS NGE+LASSS+D IW + + T+ H+ +S VAWS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 78
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
D L++ + + LK+WDV +G C T H V C + P S +V GS D I+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
G +K P V + DG ++S D RI + G + +I +++
Sbjct: 139 VKT-GMCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
P++ + S + K + + +WD + GK K YTGH KY I + F G +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 254
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
I SGSE++ +YIWN + + ++ L GH+ V + +P ++ASA+ +D TI++W
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 311
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H + V V F+ +G + SSS D IW S LK + PVSFV
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVK 202
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
+SP+ +L LKLWD G C T+ H
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 99/216 (45%), Gaps = 17/216 (7%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H N V+ F+ + S S D S IW V + + LK TL +H +PVS V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--KTGMCLK-TLPAHSDPVSAVH 159
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEK 333
++ D + +++ + ++WD +G C T D VS + P+ K ++ + D
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 334 GIFMCDCDGNEIKAWRGTRIPK---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI 390
++ G +K + G + K + +VT G+ ++S D + I NL T + ++
Sbjct: 220 KLWDYS-KGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNMVYIWNLQT--KEIV 275
Query: 391 SEEHPITSLSVSVDC---KNFIVNL---NSQEIHMW 420
+ T + +S C +N I + N + I +W
Sbjct: 276 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNE-VWFVQFSNNGEYLASSSSDCSAIIWKV 251
S + S Y+ C D + ++ L + N V FV+FS NG+Y+ +++ D + +W
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-- 222
Query: 252 LEDSKLTLKHTLRSHQNP--VSFVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGDH 308
+ SK T H+N F +S K + G+ + ++ +W+++T H
Sbjct: 223 -DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341
+V S A P + + + +K I + D
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKLWKSD 314
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V+FS NGE+LASSS+D IW + + T+ H+ +S VAWS
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 74
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
D L++ + + LK+WDV +G C T H V C + P S +V GS D I+
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
G +K P V + DG ++S D RI + G + +I +++
Sbjct: 135 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 192
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
P++ + S + K + + +WD + GK K YTGH KY I + F G +
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 250
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
I SGSE++ +YIWN + + ++ L GH+ V + +P ++ASA+ +D TI++W
Sbjct: 251 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 307
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H + V V F+ +G + SSS D IW S LK + PVSFV
Sbjct: 141 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVK 198
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
+SP+ +L LKLWD G C T+ H
Sbjct: 199 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 232
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H N V+ F+ + S S D S IW V L TL +H +PVS V
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVH 155
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEK 333
++ D + +++ + ++WD +G C T D VS + P+ K ++ + D
Sbjct: 156 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 215
Query: 334 GIFMCDCDGNEIKAWRGTRIPK---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI 390
++ G +K + G + K + +VT G+ ++S D + I NL T + ++
Sbjct: 216 KLWDYS-KGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQT--KEIV 271
Query: 391 SEEHPITSLSVSVDC---KNFIVNL---NSQEIHMW 420
+ T + +S C +N I + N + I +W
Sbjct: 272 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNE-VWFVQFSNNGEYLASSSSDCSAIIWKV 251
S + S Y+ C D + ++ L + N V FV+FS NG+Y+ +++ D + +W
Sbjct: 161 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-- 218
Query: 252 LEDSKLTLKHTLRSHQNPVS--FVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGDH 308
+ SK T H+N F +S K + G+ + ++ +W+++T H
Sbjct: 219 -DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 277
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341
+V S A P + + + +K I + D
Sbjct: 278 TDVVISTACHPTENIIASAALENDKTIKLWKSD 310
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V+FS NGE+LASSS+D IW + + T+ H+ +S VAWS
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 97
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
D L++ + + LK+WDV +G C T H V C + P S +V GS D I+
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
G +K P V + DG ++S D RI + G + +I +++
Sbjct: 158 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 215
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
P++ + S + K + + +WD + GK K YTGH KY I + F G +
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 273
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
I SGSE++ +YIWN + + ++ L GH+ V + +P ++ASA+ +D TI++W
Sbjct: 274 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 330
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H + V V F+ +G + SSS D IW S LK + PVSFV
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVK 221
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
+SP+ +L LKLWD G C T+ H
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H N V+ F+ + S S D S IW V L TL +H +PVS V
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVH 178
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEK 333
++ D + +++ + ++WD +G C T D VS + P+ K ++ + D
Sbjct: 179 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 238
Query: 334 GIFMCDCDGNEIKAWRGTRIPK---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI 390
++ G +K + G + K + +VT G+ ++S D + I NL T + ++
Sbjct: 239 KLWDYS-KGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQT--KEIV 294
Query: 391 SEEHPITSLSVSVDC---KNFIVNL---NSQEIHMW 420
+ T + +S C +N I + N + I +W
Sbjct: 295 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNE-VWFVQFSNNGEYLASSSSDCSAIIWKV 251
S + S Y+ C D + ++ L + N V FV+FS NG+Y+ +++ D + +W
Sbjct: 184 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-- 241
Query: 252 LEDSKLTLKHTLRSHQNPVS--FVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGDH 308
+ SK T H+N F +S K + G+ + ++ +W+++T H
Sbjct: 242 -DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 300
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341
+V S A P + + + +K I + D
Sbjct: 301 TDVVISTACHPTENIIASAALENDKTIKLWKSD 333
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V+FS NGE+LASSS+D IW + + T+ H+ +S VAWS
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 99
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
D L++ + + LK+WDV +G C T H V C + P S +V GS D I+
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
G +K P V + DG ++S D RI + G + +I +++
Sbjct: 160 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 217
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
P++ + S + K + + +WD + GK K YTGH KY I + F G +
Sbjct: 218 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--TYTGHKNEKYCIFANFSVTGGKW 275
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
I SGSE++ +YIWN + + ++ L GH+ V + +P ++ASA+ +D TI++W
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 332
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H + V V F+ +G + SSS D IW S LK + PVSFV
Sbjct: 166 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVK 223
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
+SP+ +L LKLWD G C T+ H
Sbjct: 224 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 257
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H N V+ F+ + S S D S IW V L TL +H +PVS V
Sbjct: 124 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVH 180
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEK 333
++ D + +++ + ++WD +G C T D VS + P+ K ++ + D
Sbjct: 181 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 240
Query: 334 GIFMCDCDGNEIKAWRGTRIPK---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI 390
++ G +K + G + K + +VT G+ ++S D + I NL T + ++
Sbjct: 241 KLWDYS-KGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQT--KEIV 296
Query: 391 SEEHPITSLSVSVDC---KNFIVNL---NSQEIHMW 420
+ T + +S C +N I + N + I +W
Sbjct: 297 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNE-VWFVQFSNNGEYLASSSSDCSAIIWKV 251
S + S Y+ C D + ++ L + N V FV+FS NG+Y+ +++ D + +W
Sbjct: 186 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-- 243
Query: 252 LEDSKLTLKHTLRSHQNPVS--FVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGDH 308
+ SK T H+N F +S K + G+ + ++ +W+++T H
Sbjct: 244 -DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 302
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341
+V S A P + + + +K I + D
Sbjct: 303 TDVVISTACHPTENIIASAALENDKTIKLWKSD 335
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V+FS NGE+LA+SS+D IW + + T+ H+ +S VAWS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 78
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
D L++ + + LK+WDV +G C T H V C + P S +V GS D I+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
G +K P V + DG ++S D RI + G + +I +++
Sbjct: 139 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
P++ + S + K + + +WD + GK K YTGH KY I + F G +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNEKYCIFANFSVTGGKW 254
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
I SGSE++ +YIWN + + ++ L GH+ V + +P ++ASA+ +D TI++W
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLW 311
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H + V V F+ +G + SSS D IW S LK + PVSFV
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVK 202
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
+SP+ +L LKLWD G C T+ H
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 17/216 (7%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H N V+ F+ + S S D S IW V L TL +H +PVS V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVH 159
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEK 333
++ D + +++ + ++WD +G C T D VS + P+ K ++ + D
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 334 GIFMCDCDGNEIKAWRGTRIPK---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI 390
++ G +K + G + K + +VT G+ ++S D + I NL T + ++
Sbjct: 220 KLWDYS-KGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQT--KEIV 275
Query: 391 SEEHPITSLSVSVDC---KNFIVNL---NSQEIHMW 420
+ T + +S C +N I + N + I +W
Sbjct: 276 QKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNE-VWFVQFSNNGEYLASSSSDCSAIIWKV 251
S + S Y+ C D + ++ L + N V FV+FS NG+Y+ +++ D + +W
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-- 222
Query: 252 LEDSKLTLKHTLRSHQNPVS--FVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGDH 308
+ SK T H+N F +S K + G+ + ++ +W+++T H
Sbjct: 223 -DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341
+V S A P + + + +K I + D
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKLWKSD 314
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V+FS NGE+LASSS+D IW + + T+ H+ +S VAWS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 78
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
D L++ + + LK+WDV +G C T H V C + P S +V GS D I+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
G +K P V + DG ++S D RI + G + +I +++
Sbjct: 139 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
P++ + S + K + + +WD + GK K YTGH KY I + F G +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNEKYCIFANFSVTGGKW 254
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
I SGSE++ +YIWN + + ++ L GH+ V + +P ++ASA+ +D TI+++
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLY 311
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H + V V F+ +G + SSS D IW S LK + PVSFV
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVK 202
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
+SP+ +L LKLWD G C T+ H
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 11/195 (5%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H N V+ F+ + S S D S IW V L TL +H +PVS V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVH 159
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEK 333
++ D + +++ + ++WD +G C T D VS + P+ K ++ + D
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 334 GIFMCDCDGNEIKAWRGTRIPK---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI 390
++ G +K + G + K + +VT G+ ++S D + I NL T + ++
Sbjct: 220 KLWDYS-KGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQT--KEIV 275
Query: 391 SEEHPITSLSVSVDC 405
+ T + +S C
Sbjct: 276 QKLQGHTDVVISTAC 290
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNE-VWFVQFSNNGEYLASSSSDCSAIIWKV 251
S + S Y+ C D + ++ L + N V FV+FS NG+Y+ +++ D + +W
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-- 222
Query: 252 LEDSKLTLKHTLRSHQNPVS--FVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGDH 308
+ SK T H+N F +S K + G+ + ++ +W+++T H
Sbjct: 223 -DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGI--FMCDC 340
+V S A P + + + +K I + DC
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKLYKSDC 315
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 147/298 (49%), Gaps = 14/298 (4%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V+FS NGE+LASSS+D IW + + T+ H+ +S VAWS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSS 78
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
D L++ + + LK+WDV +G C T H V C + P S +V GS D I+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEH- 394
G +K P V + DG ++S D RI + G + +I +++
Sbjct: 139 VKT-GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
P++ + S + K + + +WD + GK K YTGH KY I + F G +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT--YTGHKNEKYCIFANFSVTGGKW 254
Query: 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIW 509
I SGSE++ +YIWN + + ++ L GH+ V + +P ++ASA+ +D TI+++
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLF 311
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H + V V F+ +G + SSS D IW S LK + PVSFV
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA--SGQCLKTLIDDDNPPVSFVK 202
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
+SP+ +L LKLWD G C T+ H
Sbjct: 203 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 11/195 (5%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H N V+ F+ + S S D S IW V L TL +H +PVS V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVH 159
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEK 333
++ D + +++ + ++WD +G C T D VS + P+ K ++ + D
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 219
Query: 334 GIFMCDCDGNEIKAWRGTRIPK---VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI 390
++ G +K + G + K + +VT G+ ++S D + I NL T + ++
Sbjct: 220 KLWDYS-KGKCLKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQT--KEIV 275
Query: 391 SEEHPITSLSVSVDC 405
+ T + +S C
Sbjct: 276 QKLQGHTDVVISTAC 290
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 9/154 (5%)
Query: 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNE-VWFVQFSNNGEYLASSSSDCSAIIWKV 251
S + S Y+ C D + ++ L + N V FV+FS NG+Y+ +++ D + +W
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW-- 222
Query: 252 LEDSKLTLKHTLRSHQNPVS--FVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGDH 308
+ SK T H+N F +S K + G+ + ++ +W+++T H
Sbjct: 223 -DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGI--FMCDC 340
+V S A P + + + +K I F DC
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKLFKSDC 315
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 120/306 (39%), Gaps = 42/306 (13%)
Query: 217 ILTE-HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW 275
+L+E H+ V V +S G YLAS+S D + IWK +D TL H+N V VAW
Sbjct: 55 VLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD-DFECVTTLEGHENEVKSVAW 113
Query: 276 SPDDTKLLTCGNAEVLKLWDVETGI---CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332
+P L TC + + +W+V+ C H V W P + L S D
Sbjct: 114 APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDT 173
Query: 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISE 392
++ + D A V LA P G+ L S D+ +RI
Sbjct: 174 VKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW------------ 221
Query: 393 EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG-HSQNKYVIRSCFGGLDG 451
+ ++ N Q + W+ +G HS+ Y I C L G
Sbjct: 222 -------------RQYLPG-NEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC--QLTG 265
Query: 452 TFIASGSENSQIYIWNRRNSKPIE--------ILSGHSMTVNCVSWNPKRPKMLASASDD 503
+ +++ NS P + + HS VNCV+WNPK P +LAS SDD
Sbjct: 266 ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD 325
Query: 504 HTIRIW 509
+ W
Sbjct: 326 GEVAFW 331
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 207 RDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSH 266
++Q E V L H+NEV V ++ +G LA+ S D S +W+V E+ + L SH
Sbjct: 90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149
Query: 267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG--ICKHTFGDHGFIVSSCAWFPDSKRL 324
V V W P L + + +KL+ E +C T H V S A+ P +RL
Sbjct: 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRL 209
Query: 325 VCGSSDTEKGIFMCDCDGNE 344
S D I+ GNE
Sbjct: 210 ASCSDDRTVRIWRQYLPGNE 229
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 99/263 (37%), Gaps = 47/263 (17%)
Query: 252 LEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE--TGICKHTFGD-H 308
++DS + L + F+AW+P T L +CG +++W E + ICK + H
Sbjct: 1 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH 60
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENL 368
V AW P L S D I+ + D E +V +A P G L
Sbjct: 61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL 120
Query: 369 ISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK 428
+ DK + + + EE +SV LNS
Sbjct: 121 ATCSRDKSVWVWE--------VDEEDEYECVSV----------LNS-------------- 148
Query: 429 PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI--EILSGHSMTVNC 486
H+Q+ ++ +AS S + + ++ + L GH TV
Sbjct: 149 ------HTQD---VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 199
Query: 487 VSWNPKRPKMLASASDDHTIRIW 509
++++P + LAS SDD T+RIW
Sbjct: 200 LAFDPSG-QRLASCSDDRTVRIW 221
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 139/308 (45%), Gaps = 23/308 (7%)
Query: 217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWS 276
++ H + V+ FS +G+ +AS +D + ++K KL +++H++ V A+S
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFS 673
Query: 277 PDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF 336
DD+ + TC + +K+WD TG HT+ +H V+ C + S L+ + + +
Sbjct: 674 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 733
Query: 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER-------- 388
+ D + E + V +PD E L S +D +R+ ++ + ER
Sbjct: 734 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 793
Query: 389 VISEEHPITSLSVSVDCKNF------IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI 442
+S E P + V V C ++ I+ ++ ++D+ +TGH I
Sbjct: 794 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST---I 850
Query: 443 RSC-FGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501
+ C F D + + S+ + +WN + + GH V+ V ++P L +AS
Sbjct: 851 QYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-TAS 908
Query: 502 DDHTIRIW 509
DD TIR+W
Sbjct: 909 DDQTIRVW 916
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 127/301 (42%), Gaps = 39/301 (12%)
Query: 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIW---KVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
H + V V FS +G ++S D + +W KV ++S + LK + V +
Sbjct: 888 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID--------VVFQE 939
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
++T +L N L+L +TG + VS C P + + G D + I +
Sbjct: 940 NETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ---VSCCCLSPHLEYVAFG--DEDGAIKI 994
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPIT 397
+ N + + V + T DG+ LIS D I++ N T + V + H T
Sbjct: 995 IELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT-GDYVFLQAHQET 1053
Query: 398 SLSVSVDCKNFIVNLNSQ--------EIHMWDV-AGKWEKPFKYTGHSQNKYVIRSCFGG 448
K+F + +S+ + +W+V G+ E+ F T H + + SC
Sbjct: 1054 -------VKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF--TCH---QGTVLSCAIS 1101
Query: 449 LDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRI 508
D T +S S + IW+ P+ L GH+ V C +++ +LA+ D+ IRI
Sbjct: 1102 SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD-GILLATGDDNGEIRI 1160
Query: 509 W 509
W
Sbjct: 1161 W 1161
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 11/164 (6%)
Query: 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT 280
HK V +QF+ +G+ L SSS D +W + L+ +HQ V D+
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRL-LQDS 1063
Query: 281 KLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC 340
+LL+ +K+W+V TG + F H V SCA D+ + S+D I+ D
Sbjct: 1064 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL 1123
Query: 341 DG--NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL 382
+E+K G V A + DG L + + +IRI N+
Sbjct: 1124 LSPLHELKGHNGC----VRCSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 16/163 (9%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
T H+ V S++ +S+S+D +A IW L+ H L+ H V A+S
Sbjct: 1088 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF---DLLSPLHELKGHNGCVRCSAFSL 1144
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHT---------FGDHGFIVSSCAWFPDSKRLVCGS 328
D L T + +++W+V G H+ HG V+ + PDSK LV +
Sbjct: 1145 DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV-SA 1203
Query: 329 SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV 371
K + D ++ GT + K+ V+PD ++V
Sbjct: 1204 GGYLKWWNVATGDSSQTFYTNGTNLKKI---HVSPDFRTYVTV 1243
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 139/308 (45%), Gaps = 23/308 (7%)
Query: 217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWS 276
++ H + V+ FS +G+ +AS +D + ++K KL +++H++ V A+S
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFS 666
Query: 277 PDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF 336
DD+ + TC + +K+WD TG HT+ +H V+ C + S L+ + + +
Sbjct: 667 SDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726
Query: 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER-------- 388
+ D + E + V +PD E L S +D +R+ ++ + ER
Sbjct: 727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 786
Query: 389 VISEEHPITSLSVSVDCKNF------IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI 442
+S E P + V V C ++ I+ ++ ++D+ +TGH I
Sbjct: 787 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST---I 843
Query: 443 RSC-FGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501
+ C F D + + S+ + +WN + + GH V+ V ++P L +AS
Sbjct: 844 QYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL-TAS 901
Query: 502 DDHTIRIW 509
DD TIR+W
Sbjct: 902 DDQTIRVW 909
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 127/301 (42%), Gaps = 39/301 (12%)
Query: 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIW---KVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
H + V V FS +G ++S D + +W KV ++S + LK + V +
Sbjct: 881 HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID--------VVFQE 932
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
++T +L N L+L +TG + VS C P + + G D + I +
Sbjct: 933 NETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ---VSCCCLSPHLEYVAFG--DEDGAIKI 987
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPIT 397
+ N + + V + T DG+ LIS D I++ N T + V + H T
Sbjct: 988 IELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT-GDYVFLQAHQET 1046
Query: 398 SLSVSVDCKNFIVNLNSQ--------EIHMWDV-AGKWEKPFKYTGHSQNKYVIRSCFGG 448
K+F + +S+ + +W+V G+ E+ F T H + + SC
Sbjct: 1047 -------VKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF--TCH---QGTVLSCAIS 1094
Query: 449 LDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRI 508
D T +S S + IW+ P+ L GH+ V C +++ +LA+ D+ IRI
Sbjct: 1095 SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD-GILLATGDDNGEIRI 1153
Query: 509 W 509
W
Sbjct: 1154 W 1154
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 73/164 (44%), Gaps = 11/164 (6%)
Query: 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT 280
HK V +QF+ +G+ L SSS D +W + L+ +HQ V D+
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRL-LQDS 1056
Query: 281 KLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC 340
+LL+ +K+W+V TG + F H V SCA D+ + S+D I+ D
Sbjct: 1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL 1116
Query: 341 DG--NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL 382
+E+K G V A + DG L + + +IRI N+
Sbjct: 1117 LSPLHELKGHNGC----VRCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 16/163 (9%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
T H+ V S++ +S+S+D +A IW L+ H L+ H V A+S
Sbjct: 1081 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF---DLLSPLHELKGHNGCVRCSAFSL 1137
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHT---------FGDHGFIVSSCAWFPDSKRLVCGS 328
D L T + +++W+V G H+ HG V+ + PDSK LV +
Sbjct: 1138 DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV-SA 1196
Query: 329 SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV 371
K + D ++ GT + K+ V+PD ++V
Sbjct: 1197 GGYLKWWNVATGDSSQTFYTNGTNLKKI---HVSPDFRTYVTV 1236
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 136/318 (42%), Gaps = 24/318 (7%)
Query: 217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWS 276
++ H + V+ FS +G+ +AS +D + ++K KL +++H++ V A+S
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLL---EIKAHEDEVLCCAFS 672
Query: 277 PDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF 336
DD + TC + +K+W+ TG HT+ +H V+ C + S L+ + ++ +
Sbjct: 673 TDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLK 732
Query: 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER-------- 388
+ D + E + V +PD + L S +D +++ + + ER
Sbjct: 733 LWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQF 792
Query: 389 VISEEHPITSLSVSVDCKNF------IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI 442
++ E P + V V C ++ I+ +I ++D+ +TGH I
Sbjct: 793 FLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHS---TI 849
Query: 443 RSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD 502
+ C + +WN + + GH V+ V ++P L S SD
Sbjct: 850 QYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS-SD 908
Query: 503 DHTIRIWGP---CQSSEV 517
D TIR+W C++S V
Sbjct: 909 DQTIRLWETKKVCKNSAV 926
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 126/337 (37%), Gaps = 59/337 (17%)
Query: 216 QILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW 275
+I T H + + + FS + S +W SK+ R H + V V +
Sbjct: 840 EIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVA---DCRGHLSWVHGVMF 896
Query: 276 SPDDTKLLTCGNAEVLKLWDVETGICKHTF------------------------------ 305
SPD + LT + + ++LW+ + +CK++
Sbjct: 897 SPDGSSFLTSSDDQTIRLWETKK-VCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLI 955
Query: 306 -GDHGFI-------VSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVL 357
G G I VS C P + + G D I + + N I R V
Sbjct: 956 NGRTGQIDYLTEAQVSCCCLSPHLQYIAFG--DENGAIEILELVNNRIFQSRFQHKKTVW 1013
Query: 358 DLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEI 417
+ T D + LIS D +I++ N + + H T K+F + NS+ +
Sbjct: 1014 HIQFTADEKTLISSSDDAEIQVWNW-QLDKCIFLRGHQET-------VKDFRLLKNSRLL 1065
Query: 418 HMWDVAGKWEKPFKYTGHSQNKYV-----IRSCFGGLDGTFIASGSENSQIYIWNRRNSK 472
W G + TG+ + +V + SC D T +S S + IW+
Sbjct: 1066 S-WSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLL 1124
Query: 473 PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
P+ L GH+ V C +++ +LA+ D+ IRIW
Sbjct: 1125 PLHELRGHNGCVRCSAFSVD-STLLATGDDNGEIRIW 1160
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT 280
H+ V S++ +S+S+D +A IW D L L H LR H V A+S D T
Sbjct: 1090 HQGTVLSCDISHDATKFSSTSADKTAKIWSF--DLLLPL-HELRGHNGCVRCSAFSVDST 1146
Query: 281 KLLTCGNAEVLKLWDVETGICKHT--------FGDHGFIVSSCAWFPDSKRLV 325
L T + +++W+V G H HG V+ + PD K L+
Sbjct: 1147 LLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLI 1199
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 109/298 (36%), Gaps = 70/298 (23%)
Query: 228 VQFSNNGEYLASSSSDCSAIIW---KVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLT 284
V FS +G +SS D + +W KV ++S + LK + V + ++ +L
Sbjct: 894 VMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVD--------VVFQENEVMVLA 945
Query: 285 CGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE 344
+ L+L + TG + VS C P + + G D I + + N
Sbjct: 946 VDHIRRLQLINGRTGQIDYLTEAQ---VSCCCLSPHLQYIAFG--DENGAIEILELVNNR 1000
Query: 345 IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVD 404
I R V + T D + LIS D +I++ N + + H T
Sbjct: 1001 IFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNW-QLDKCIFLRGHQET------- 1052
Query: 405 CKNFIVNLNSQ--------EIHMWDV-AGKWEKPF-----------------KYTGHSQN 438
K+F + NS+ + +W++ G EK F K++ S +
Sbjct: 1053 VKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSAD 1112
Query: 439 KYV--------------------IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEI 476
K +R +D T +A+G +N +I IWN N + + +
Sbjct: 1113 KTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHL 1170
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 230 FSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR-----SHQNPVSFVAWSPDDTKLLT 284
FS + LA+ + IW V L L L +H V+ + +SPD L++
Sbjct: 1141 FSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLIS 1200
Query: 285 CGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLV 325
G +K W+V TG TF +G + PD K V
Sbjct: 1201 AGG--YIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYV 1239
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 145/335 (43%), Gaps = 56/335 (16%)
Query: 220 EHKNEVWFVQFSNNGEYLASSSSDCS--------AIIWKVLEDSKLTL-KHTLRSHQNP- 269
+H + V V+FSN+GEYLA+ + + +++ ++ +DS L + +P
Sbjct: 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 270 ----VSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLV 325
+ V +SPD L T ++++WD+E H + S +FP +LV
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 326 CGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLD----LAVTP-DGENLISVLSDKDIRIL 380
GS D I+ +++ + + + D +AV+P DG+ + + D+ +R+
Sbjct: 182 SGSGDRTVRIW-------DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 234
Query: 381 N--LGTYAERVISE-------EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP-- 429
+ G ER+ SE + + S+ + D ++ + + + +W++ K
Sbjct: 235 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294
Query: 430 ---------FKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH 480
Y GH K + S + +I SGS++ + W++++ P+ +L GH
Sbjct: 295 KTPNSGTCEVTYIGH---KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 351
Query: 481 SMTV------NCVSWNPKRPKMLASASDDHTIRIW 509
+V N S P+ + A+ S D RIW
Sbjct: 352 RNSVISVAVANGSSLGPEY-NVFATGSGDCKARIW 385
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 219 TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE-----DSKL----TLKHTLRSHQNP 269
T HK+ V+ V F+ +G+ + S S D S +W + DSK T + T H++
Sbjct: 253 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 270 VSFVAWSPDDTKLLTCGNAEVLKLWDVETG 299
V VA + +D +L+ + WD ++G
Sbjct: 313 VLSVATTQNDEYILSGSKDRGVLFWDKKSG 342
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 7/176 (3%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL--EDSKLTLKHTLRSH 266
++ V L+ H EV ++++ +G +LAS +D +W E + L+ T H
Sbjct: 137 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQH 195
Query: 267 QNPVSFVAWSPDDTKLLTCGNAEV---LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKR 323
Q V VAW P + +L G +++W+V +G C H V S W P K
Sbjct: 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKE 254
Query: 324 LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI 379
L+ G + + + A +VL L ++PDG + S +D+ +R+
Sbjct: 255 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 21/204 (10%)
Query: 330 DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERV 389
D G + N + W + + L + GE + SV K+ L +GT + V
Sbjct: 32 DWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV 91
Query: 390 ----ISEEHPITSLSV------SVDCKNFIVNLNSQ--EIHMWDVAGKWEKPFKYTGHSQ 437
+ ++ + +++ S+ ++I++ S+ IH DV +GHSQ
Sbjct: 92 QLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 151
Query: 438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK----PIEILSGHSMTVNCVSWNPKR 493
+R DG +ASG ++ + +W + P++ + H V V+W P +
Sbjct: 152 EVCGLR---WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 208
Query: 494 PKMLAS--ASDDHTIRIWGPCQSS 515
+LA+ + D IRIW C +
Sbjct: 209 SNVLATGGGTSDRHIRIWNVCSGA 232
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 113/293 (38%), Gaps = 65/293 (22%)
Query: 228 VQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN 287
V + G YLA +S +W V + +L + SH V ++W ++ +L+ G+
Sbjct: 73 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRL---RNMTSHSARVGSLSW---NSYILSSGS 126
Query: 288 -AEVLKLWDVETGICKH---TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF-MCDCDG 342
+ + DV + +H T H V W PD + L G +D ++ +G
Sbjct: 127 RSGHIHHHDVR--VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184
Query: 343 NEIKAWRGTRIP-KVLDLAVTPDGENLISV---LSDKDIRILNLGTYAERVISEEHPITS 398
+ T+ V +A P N+++ SD+ IRI N+ + A
Sbjct: 185 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-----------C 233
Query: 399 LSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFK--YTGHSQNKYVIRSCFGGLDGTFIAS 456
LS +VD + + ++ W +K +GH
Sbjct: 234 LS-AVDAHSQVCSI------------LWSPHYKELISGH--------------------- 259
Query: 457 GSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
G +Q+ IW + L GH+ V ++ +P +ASA+ D T+R+W
Sbjct: 260 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLW 311
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 7/176 (3%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL--EDSKLTLKHTLRSH 266
++ V L+ H EV ++++ +G +LAS +D +W E + L+ T H
Sbjct: 228 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQH 286
Query: 267 QNPVSFVAWSPDDTKLLTCGNA---EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKR 323
Q V VAW P + +L G +++W+V +G C H V S W P K
Sbjct: 287 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKE 345
Query: 324 LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI 379
L+ G + + + A +VL L ++PDG + S +D+ +R+
Sbjct: 346 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 401
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 21/201 (10%)
Query: 330 DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERV 389
D G + N + W + + L + GE + SV K+ L +GT + V
Sbjct: 123 DWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV 182
Query: 390 ----ISEEHPITSLSV------SVDCKNFIVNLNSQ--EIHMWDVAGKWEKPFKYTGHSQ 437
+ ++ + +++ S+ ++I++ S+ IH DV +GHSQ
Sbjct: 183 QLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 242
Query: 438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK----PIEILSGHSMTVNCVSWNPKR 493
+R DG +ASG ++ + +W + P++ + H V V+W P +
Sbjct: 243 EVCGLRWA---PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 299
Query: 494 PKMLAS--ASDDHTIRIWGPC 512
+LA+ + D IRIW C
Sbjct: 300 SNVLATGGGTSDRHIRIWNVC 320
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 113/293 (38%), Gaps = 65/293 (22%)
Query: 228 VQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN 287
V + G YLA +S +W V + +L + SH V ++W ++ +L+ G+
Sbjct: 164 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRL---RNMTSHSARVGSLSW---NSYILSSGS 217
Query: 288 -AEVLKLWDVETGICKH---TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF-MCDCDG 342
+ + DV + +H T H V W PD + L G +D ++ +G
Sbjct: 218 RSGHIHHHDVR--VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 275
Query: 343 NEIKAWRGTRIP-KVLDLAVTPDGENLISV---LSDKDIRILNLGTYAERVISEEHPITS 398
+ T+ V +A P N+++ SD+ IRI N+ + A
Sbjct: 276 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-----------C 324
Query: 399 LSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFK--YTGHSQNKYVIRSCFGGLDGTFIAS 456
LS +VD + + ++ W +K +GH
Sbjct: 325 LS-AVDAHSQVCSI------------LWSPHYKELISGH--------------------- 350
Query: 457 GSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
G +Q+ IW + L GH+ V ++ +P +ASA+ D T+R+W
Sbjct: 351 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 7/176 (3%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL--EDSKLTLKHTLRSH 266
++ V L+ H EV ++++ +G +LAS +D +W E + L+ T H
Sbjct: 217 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQH 275
Query: 267 QNPVSFVAWSPDDTKLLTCGNA---EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKR 323
Q V VAW P + +L G +++W+V +G C H V S W P K
Sbjct: 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKE 334
Query: 324 LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI 379
L+ G + + + A +VL L ++PDG + S +D+ +R+
Sbjct: 335 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 390
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 21/201 (10%)
Query: 330 DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERV 389
D G + N + W + + L + GE + SV K+ L +GT + V
Sbjct: 112 DWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV 171
Query: 390 ----ISEEHPITSLSV------SVDCKNFIVNLNSQ--EIHMWDVAGKWEKPFKYTGHSQ 437
+ ++ + +++ S+ ++I++ S+ IH DV +GHSQ
Sbjct: 172 QLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 231
Query: 438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK----PIEILSGHSMTVNCVSWNPKR 493
+R DG +ASG ++ + +W + P++ + H V V+W P +
Sbjct: 232 EVCGLRWA---PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288
Query: 494 PKMLAS--ASDDHTIRIWGPC 512
+LA+ + D IRIW C
Sbjct: 289 SNVLATGGGTSDRHIRIWNVC 309
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 113/293 (38%), Gaps = 65/293 (22%)
Query: 228 VQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN 287
V + G YLA +S +W V + +L + SH V ++W ++ +L+ G+
Sbjct: 153 VAWIKEGNYLAVGTSSAEVQLWDVQQQKRL---RNMTSHSARVGSLSW---NSYILSSGS 206
Query: 288 -AEVLKLWDVETGICKH---TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF-MCDCDG 342
+ + DV + +H T H V W PD + L G +D ++ +G
Sbjct: 207 RSGHIHHHDVR--VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264
Query: 343 NEIKAWRGTRIP-KVLDLAVTPDGENLISV---LSDKDIRILNLGTYAERVISEEHPITS 398
+ T+ V +A P N+++ SD+ IRI N+ + A
Sbjct: 265 GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-----------C 313
Query: 399 LSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFK--YTGHSQNKYVIRSCFGGLDGTFIAS 456
LS +VD + + ++ W +K +GH
Sbjct: 314 LS-AVDAHSQVCSI------------LWSPHYKELISGH--------------------- 339
Query: 457 GSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
G +Q+ IW + L GH+ V ++ +P +ASA+ D T+R+W
Sbjct: 340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLW 391
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/315 (22%), Positives = 125/315 (39%), Gaps = 34/315 (10%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L+ H++ V V F + S+S D + +W + TL+ H + V +++
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD---FERTLKGHTDSVQDISFDH 160
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
L +C +KLWD + C T H VSS + P+ +V S D K I M
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD--KTIKM 218
Query: 338 CDCD-GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEH-- 394
+ G +K + G R V + DG + S +D+ +R+ + T + EH
Sbjct: 219 WEVQTGYCVKTFTGHR-EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 395 --------PITSLSVSVDCKN------------FIVNLNSQEIHMWDVAGKWEKPFKYTG 434
P +S S + + + I MWDV+ G
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVG 336
Query: 435 HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRP 494
H +R G FI S +++ + +W+ +N + ++ L+ H V + ++ P
Sbjct: 337 HDN---WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 393
Query: 495 KMLASASDDHTIRIW 509
+ + S D T+++W
Sbjct: 394 -YVVTGSVDQTVKVW 407
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
E ++ + H + V V NG+++ S+S D + +W+V + +K T H+ V
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV--QTGYCVK-TFTGHREWVRM 239
Query: 273 VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDS 321
V + D T + +C N + +++W V T CK +H +V +W P+S
Sbjct: 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 288
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL 293
G +L S S D + +W V L TL H N V V + +L+C + + L++
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLM---TLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 294 WDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMC 338
WD + C T H V+S + + +V GS D ++ C
Sbjct: 365 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 17/197 (8%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTL-KHTLRSHQ 267
+I + L H +EV + + ++G LAS +D IW D++ ++ K T +H
Sbjct: 204 RIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW----DARSSIPKFTKTNHN 259
Query: 268 NPVSFVAWSPDDTKLLTCGNAEV---LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRL 324
V VAW P + LL G + + W+ TG +T D G V+S W P SK +
Sbjct: 260 AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEI 318
Query: 325 VC--GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL 382
+ G D I+ G + +VL A++PDG L + SD++++ +
Sbjct: 319 MSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
Query: 383 --GTYAERVISEEHPIT 397
G + +R I PIT
Sbjct: 379 YDGDHVKRPI----PIT 391
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD--DHTIR 507
DG +ASG ++ + IW+ R+S P + H+ V V+W P + +LA+ D I
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287
Query: 508 IWGPCQSSEV 517
W + V
Sbjct: 288 FWNAATGARV 297
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWN 490
DG+F++ G N + I++ + + ++GH V C+SWN
Sbjct: 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN 185
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 118/300 (39%), Gaps = 69/300 (23%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
++ L H VW Q +N + S S+D + +W + HTL H + V +
Sbjct: 152 LRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECI---HTLYGHTSTVRCM- 205
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKG 334
+ ++++ L++WD+ETG C H H V + D +R+V G+ D
Sbjct: 206 -HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYD---- 258
Query: 335 IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEH 394
FM +K W P+ E + L R+ +L V+S
Sbjct: 259 -FM-------VKVW-------------DPETETCLHTLQGHTNRVYSLQFDGIHVVS--- 294
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLD--GT 452
SL S I +WDV TGH +S G++
Sbjct: 295 --GSLDTS--------------IRVWDVETG-NCIHTLTGH-------QSLTSGMELKDN 330
Query: 453 FIASGSENSQIYIWNRRNSKPIEILSG---HSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+ SG+ +S + IW+ + + ++ L G H V C+ +N + ++SDD T+++W
Sbjct: 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN---FVITSSDDGTVKLW 387
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
+ LT H++ ++ +N L S ++D + IW + L HQ+ V+ +
Sbjct: 312 IHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ 369
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETG 299
++ + ++T + +KLWD++TG
Sbjct: 370 FNKN--FVITSSDDGTVKLWDLKTG 392
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 111/298 (37%), Gaps = 69/298 (23%)
Query: 226 WFVQFSNNGEY---LASSSSDCSAIIWKVLEDSK--LTLKHTLRSHQNPVSFVAWSPDDT 280
W Q + ++ + S+S D + I+WK+ D + LR H + VS V S D
Sbjct: 40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ 99
Query: 281 KLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC 340
L+ L+LWD+ TG F H V S A+ D++++V GS D
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD---------- 149
Query: 341 DGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLS 400
IK W LG V E H S
Sbjct: 150 --KTIKLWN-------------------------------TLGVCKYTVQDESH-----S 171
Query: 401 VSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKY---------TGHSQNKYVIRSCFGGLDG 451
V C F N ++ I V+ W+K K T H + + + DG
Sbjct: 172 EWVSCVRFSPNSSNPII----VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 227
Query: 452 TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+ ASG ++ Q +W+ K + L G + +N + ++P R + A+ +I+IW
Sbjct: 228 SLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCAATGP--SIKIW 282
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFV 273
T + H +V V FS++ + S S D + +W L K T++ SH VS V
Sbjct: 120 TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCV 177
Query: 274 AWSPDDTK--LLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT 331
+SP+ + +++CG +++K+W++ K H +++ PD G D
Sbjct: 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237
Query: 332 E-------KGIFMCDCDGNEI 345
+ +G + DG +I
Sbjct: 238 QAMLWDLNEGKHLYTLDGGDI 258
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 14/168 (8%)
Query: 221 HKNEVWFVQFSNNGE--YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD 278
H V V+FS N + S D +W L + KL H H ++ V SPD
Sbjct: 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN-LANCKLKTNHI--GHTGYLNTVTVSPD 226
Query: 279 DTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAWFPDSKRLVCGSS------DT 331
+ + G LWD+ G KH + D G I+++ + P+ L + D
Sbjct: 227 GSLCASGGKDGQAMLWDLNEG--KHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDL 284
Query: 332 EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI 379
E I + + I P+ LA + DG+ L + +D +R+
Sbjct: 285 EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 477 LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
L GH+ V ++ P+ P M+ SAS D TI +W
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMW 66
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 111/298 (37%), Gaps = 69/298 (23%)
Query: 226 WFVQFSNNGEY---LASSSSDCSAIIWKVLEDSK--LTLKHTLRSHQNPVSFVAWSPDDT 280
W Q + ++ + S+S D + I+WK+ D + LR H + VS V S D
Sbjct: 17 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ 76
Query: 281 KLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC 340
L+ L+LWD+ TG F H V S A+ D++++V GS D
Sbjct: 77 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD---------- 126
Query: 341 DGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLS 400
IK W LG V E H S
Sbjct: 127 --KTIKLWN-------------------------------TLGVCKYTVQDESH-----S 148
Query: 401 VSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKY---------TGHSQNKYVIRSCFGGLDG 451
V C F N ++ I V+ W+K K T H + + + DG
Sbjct: 149 EWVSCVRFSPNSSNPII----VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 204
Query: 452 TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+ ASG ++ Q +W+ K + L G + +N + ++P R + A+ +I+IW
Sbjct: 205 SLCASGGKDGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCAATGP--SIKIW 259
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFV 273
T + H +V V FS++ + S S D + +W L K T++ SH VS V
Sbjct: 97 TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCV 154
Query: 274 AWSPDDTK--LLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT 331
+SP+ + +++CG +++K+W++ K H +++ PD G D
Sbjct: 155 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 214
Query: 332 E-------KGIFMCDCDGNEI 345
+ +G + DG +I
Sbjct: 215 QAMLWDLNEGKHLYTLDGGDI 235
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 14/168 (8%)
Query: 221 HKNEVWFVQFSNNGE--YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD 278
H V V+FS N + S D +W L + KL H H ++ V SPD
Sbjct: 147 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN-LANCKLKTNHI--GHTGYLNTVTVSPD 203
Query: 279 DTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAWFPDSKRLVCGSS------DT 331
+ + G LWD+ G KH + D G I+++ + P+ L + D
Sbjct: 204 GSLCASGGKDGQAMLWDLNEG--KHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDL 261
Query: 332 EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI 379
E I + + I P+ LA + DG+ L + +D +R+
Sbjct: 262 EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 309
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 477 LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
L GH+ V ++ P+ P M+ SAS D TI +W
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMW 43
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 114/258 (44%), Gaps = 17/258 (6%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H V V SNNG + S+S D S +W L++ + K H V VA+SP
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWN-LQNGQCQYK--FLGHTKDVLSVAFSP 119
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTF--GDHGFIVSSCAWFP--DSKRLVCGSSDTEK 333
D+ ++++ G L++W+V+ G C HT G H VS + P D+ +V G D
Sbjct: 120 DNRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 334 GIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERV--IS 391
++ G + +G V + V+PDG S D R+ +L T E + ++
Sbjct: 179 KVWDL-ATGRLVTDLKG-HTNYVTSVTVSPDGSLCASSDKDGVARLWDL-TKGEALSEMA 235
Query: 392 EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFG---G 448
PI + S + + ++ + I ++D+ K H +K ++ C
Sbjct: 236 AGAPINQICFSPN-RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWS 294
Query: 449 LDGTFIASGSENSQIYIW 466
DG+ + SG ++ I +W
Sbjct: 295 ADGSTLYSGYTDNVIRVW 312
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 453 FIASGSENSQIYIWNRRNSKPIE-ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511
++ SGS++ + +WN N+ +E GH V CV++NPK P AS D T+++W
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 512 CQSS 515
QS+
Sbjct: 171 GQST 174
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/258 (19%), Positives = 108/258 (41%), Gaps = 8/258 (3%)
Query: 256 KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSC 315
KL +K T + + V + + P + +LT + +++W+ ET + + V +
Sbjct: 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAG 61
Query: 316 AWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK 375
+ ++ GS D +F + G ++ + + +AV P ++S D
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNT-GEKVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 376 DIRILNL-GTYAERVISEEHPITSLSVSVDCKN---FIVNLNSQEIHMWDVAGKWEKPFK 431
+++ N +A E H + V+ + K+ F + + +W + G+ F
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-GQSTPNFT 178
Query: 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 491
T + + D ++ + S++ I IW+ + + L GH V+ ++P
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Query: 492 KRPKMLASASDDHTIRIW 509
P ++ S S+D T++IW
Sbjct: 239 TLP-IIISGSEDGTLKIW 255
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 30/183 (16%)
Query: 216 QILTEHKNEVWFVQFS-NNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN-PVSFV 273
Q H++ V V F+ + AS D + +W + + T TL + Q V++V
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 274 AWSP--DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT 331
+ P D ++T + +K+WD +T C T H VS + P ++ GS D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED- 249
Query: 332 EKGIFMCDCDGNEIKAWRGT--RIPKVLD--------LAVTPDG-ENLISVLSDKDIRIL 380
+K W + ++ K L+ +A P G +N I+ D +L
Sbjct: 250 -----------GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298
Query: 381 NLG 383
+LG
Sbjct: 299 SLG 301
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 453 FIASGSENSQIYIWNRRNSKPIE-ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511
++ SGS++ + +WN N+ +E GH V CV++NPK P AS D T+++W
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 512 CQSS 515
QS+
Sbjct: 171 GQST 174
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 108/258 (41%), Gaps = 8/258 (3%)
Query: 256 KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSC 315
KL +K T + + V + + P + +LT + ++LW+ ET + + V +
Sbjct: 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAG 61
Query: 316 AWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK 375
+ ++ GS D +F + G ++ + + +AV P ++S D
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNT-GEKVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 376 DIRILNL-GTYAERVISEEHPITSLSVSVDCKN---FIVNLNSQEIHMWDVAGKWEKPFK 431
+++ N +A E H + V+ + K+ F + + +W + G+ F
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-GQSTPNFT 178
Query: 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 491
T + + D ++ + S++ I IW+ + + L GH V+ ++P
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Query: 492 KRPKMLASASDDHTIRIW 509
P ++ S S+D T++IW
Sbjct: 239 TLP-IIISGSEDGTLKIW 255
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 30/183 (16%)
Query: 216 QILTEHKNEVWFVQFS-NNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFV 273
Q H++ V V F+ + AS D + +W + + T TL + Q V++V
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 274 AWSP--DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT 331
+ P D ++T + +K+WD +T C T H VS + P ++ GS D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED- 249
Query: 332 EKGIFMCDCDGNEIKAWRGT--RIPKVLD--------LAVTPDG-ENLISVLSDKDIRIL 380
+K W + ++ K L+ +A P G +N I+ D +L
Sbjct: 250 -----------GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298
Query: 381 NLG 383
+LG
Sbjct: 299 SLG 301
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/308 (18%), Positives = 122/308 (39%), Gaps = 17/308 (5%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN 268
+I T + L H +++ + + + L S+S D IIW +K+ H + +
Sbjct: 53 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV---HAIPLRSS 109
Query: 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-----ICKHTFGDHGFIVSSCAWFPDSKR 323
V A++P + G + +++++T + + G G++ SC F D +
Sbjct: 110 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL--SCCRFLDDNQ 167
Query: 324 LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL- 382
+V S DT ++ D + + V+ L++ PD +S D ++ ++
Sbjct: 168 IVTSSGDTTCALW--DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 383 -GTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441
G + E I ++ + F + ++D+ + ++ H
Sbjct: 226 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL--RADQELMTYSHDNIICG 283
Query: 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501
I S G + +G ++ +W+ + +L+GH V+C+ +A+ S
Sbjct: 284 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGS 342
Query: 502 DDHTIRIW 509
D ++IW
Sbjct: 343 WDSFLKIW 350
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 98/252 (38%), Gaps = 52/252 (20%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H + +F ++ + + +SS D + +W + T H V ++ +P
Sbjct: 150 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAP 205
Query: 278 DDTKLLTCGNAEV-LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF 336
D T+L G + KLWDV G+C+ TF H +++ +FP+ GS D +F
Sbjct: 206 D-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 264
Query: 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPI 396
D E+ +T +N+I I
Sbjct: 265 DLRAD-QEL---------------MTYSHDNIIC------------------------GI 284
Query: 397 TSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTFIA 455
TS+S S + + + ++WD A K ++ GH SC G DG +A
Sbjct: 285 TSVSFSKSGRLLLAGYDDFNCNVWD-ALKADRAGVLAGHDNRV----SCLGVTDDGMAVA 339
Query: 456 SGSENSQIYIWN 467
+GS +S + IWN
Sbjct: 340 TGSWDSFLKIWN 351
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/308 (18%), Positives = 122/308 (39%), Gaps = 17/308 (5%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN 268
+I T + L H +++ + + + L S+S D IIW +K+ H + +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV---HAIPLRSS 98
Query: 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-----ICKHTFGDHGFIVSSCAWFPDSKR 323
V A++P + G + +++++T + + G G++ SC F D +
Sbjct: 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL--SCCRFLDDNQ 156
Query: 324 LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL- 382
+V S DT ++ D + + V+ L++ PD +S D ++ ++
Sbjct: 157 IVTSSGDTTCALW--DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 383 -GTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441
G + E I ++ + F + ++D+ + ++ H
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL--RADQELMTYSHDNIICG 272
Query: 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501
I S G + +G ++ +W+ + +L+GH V+C+ +A+ S
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGS 331
Query: 502 DDHTIRIW 509
D ++IW
Sbjct: 332 WDSFLKIW 339
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 98/252 (38%), Gaps = 52/252 (20%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H + +F ++ + + +SS D + +W + T H V ++ +P
Sbjct: 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAP 194
Query: 278 DDTKLLTCGNAEV-LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF 336
D T+L G + KLWDV G+C+ TF H +++ +FP+ GS D +F
Sbjct: 195 D-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPI 396
D E+ +T +N+I I
Sbjct: 254 DLRAD-QEL---------------MTYSHDNIIC------------------------GI 273
Query: 397 TSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTFIA 455
TS+S S + + + ++WD A K ++ GH SC G DG +A
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWD-ALKADRAGVLAGHDNRV----SCLGVTDDGMAVA 328
Query: 456 SGSENSQIYIWN 467
+GS +S + IWN
Sbjct: 329 TGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/308 (18%), Positives = 122/308 (39%), Gaps = 17/308 (5%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN 268
+I T + L H +++ + + + L S+S D IIW +K+ H + +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV---HAIPLRSS 98
Query: 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-----ICKHTFGDHGFIVSSCAWFPDSKR 323
V A++P + G + +++++T + + G G++ SC F D +
Sbjct: 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL--SCCRFLDDNQ 156
Query: 324 LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL- 382
+V S DT ++ D + + V+ L++ PD +S D ++ ++
Sbjct: 157 IVTSSGDTTCALW--DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 383 -GTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441
G + E I ++ + F + ++D+ + ++ H
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL--RADQELMTYSHDNIICG 272
Query: 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501
I S G + +G ++ +W+ + +L+GH V+C+ +A+ S
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGS 331
Query: 502 DDHTIRIW 509
D ++IW
Sbjct: 332 WDSFLKIW 339
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 98/252 (38%), Gaps = 52/252 (20%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H + +F ++ + + +SS D + +W + T H V ++ +P
Sbjct: 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAP 194
Query: 278 DDTKLLTCGNAEV-LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF 336
D T+L G + KLWDV G+C+ TF H +++ +FP+ GS D +F
Sbjct: 195 D-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPI 396
D E+ +T +N+I I
Sbjct: 254 DLRAD-QEL---------------MTYSHDNIIC------------------------GI 273
Query: 397 TSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTFIA 455
TS+S S + + + ++WD A K ++ GH SC G DG +A
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWD-ALKADRAGVLAGHDNRV----SCLGVTDDGMAVA 328
Query: 456 SGSENSQIYIWN 467
+GS +S + IWN
Sbjct: 329 TGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/308 (18%), Positives = 122/308 (39%), Gaps = 17/308 (5%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN 268
+I T + L H +++ + + + L S+S D IIW +K+ H + +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV---HAIPLRSS 98
Query: 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-----ICKHTFGDHGFIVSSCAWFPDSKR 323
V A++P + G + +++++T + + G G++ SC F D +
Sbjct: 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL--SCCRFLDDNQ 156
Query: 324 LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL- 382
+V S DT ++ D + + V+ L++ PD +S D ++ ++
Sbjct: 157 IVTSSGDTTCALW--DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 383 -GTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441
G + E I ++ + F + ++D+ + ++ H
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL--RADQELMTYSHDNIICG 272
Query: 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501
I S G + +G ++ +W+ + +L+GH V+C+ +A+ S
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGS 331
Query: 502 DDHTIRIW 509
D ++IW
Sbjct: 332 WDSFLKIW 339
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 98/252 (38%), Gaps = 52/252 (20%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H + +F ++ + + +SS D + +W + T H V ++ +P
Sbjct: 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAP 194
Query: 278 DDTKLLTCGNAEV-LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF 336
D T+L G + KLWDV G+C+ TF H +++ +FP+ GS D +F
Sbjct: 195 D-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPI 396
D E+ +T +N+I I
Sbjct: 254 DLRAD-QEL---------------MTYSHDNIIC------------------------GI 273
Query: 397 TSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTFIA 455
TS+S S + + + ++WD A K ++ GH SC G DG +A
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWD-ALKADRAGVLAGHDNRV----SCLGVTDDGMAVA 328
Query: 456 SGSENSQIYIWN 467
+GS +S + IWN
Sbjct: 329 TGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/308 (18%), Positives = 122/308 (39%), Gaps = 17/308 (5%)
Query: 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN 268
+I T + L H +++ + + + L S+S D IIW +K+ H + +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV---HAIPLRSS 98
Query: 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-----ICKHTFGDHGFIVSSCAWFPDSKR 323
V A++P + G + +++++T + + G G++ SC F D +
Sbjct: 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYL--SCCRFLDDNQ 156
Query: 324 LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL- 382
+V S DT ++ D + + V+ L++ PD +S D ++ ++
Sbjct: 157 IVTSSGDTTCALW--DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 383 -GTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441
G + E I ++ + F + ++D+ + ++ H
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL--RADQELMTYSHDNIICG 272
Query: 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501
I S G + +G ++ +W+ + +L+GH V+C+ +A+ S
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGS 331
Query: 502 DDHTIRIW 509
D ++IW
Sbjct: 332 WDSFLKIW 339
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 98/252 (38%), Gaps = 52/252 (20%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
L H + +F ++ + + +SS D + +W + T H V ++ +P
Sbjct: 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDI---ETGQQTTTFTGHTGDVMSLSLAP 194
Query: 278 DDTKLLTCGNAEV-LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF 336
D T+L G + KLWDV G+C+ TF H +++ +FP+ GS D +F
Sbjct: 195 D-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253
Query: 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPI 396
D E+ +T +N+I I
Sbjct: 254 DLRAD-QEL---------------MTYSHDNIIC------------------------GI 273
Query: 397 TSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTFIA 455
TS+S S + + + ++WD A K ++ GH SC G DG +A
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVWD-ALKADRAGVLAGHDNRV----SCLGVTDDGMAVA 328
Query: 456 SGSENSQIYIWN 467
+GS +S + IWN
Sbjct: 329 TGSWDSFLKIWN 340
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE-ILSGHSMTVNCVSWNPKRPKMLASA 500
IRS ++ SGS++ + +WN N+ +E GH V CV++NPK P AS
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 501 SDDHTIRIWGPCQSS 515
D T+++W QS+
Sbjct: 160 CLDRTVKVWSLGQST 174
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 108/258 (41%), Gaps = 8/258 (3%)
Query: 256 KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSC 315
KL +K T + + V + + P + +LT + ++LW+ ET + + V +
Sbjct: 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAG 61
Query: 316 AWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK 375
+ ++ GS D +F + G ++ + + +AV P ++S D
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNT-GEKVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 376 DIRILNL-GTYAERVISEEHPITSLSVSVDCKN---FIVNLNSQEIHMWDVAGKWEKPFK 431
+++ N +A E H + V+ + K+ F + + +W + G+ F
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-GQSTPNFT 178
Query: 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 491
T + + D ++ + S++ I IW+ + + L GH V+ ++P
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Query: 492 KRPKMLASASDDHTIRIW 509
P ++ S S+D T++IW
Sbjct: 239 TLP-IIISGSEDGTLKIW 255
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 30/183 (16%)
Query: 216 QILTEHKNEVWFVQFS-NNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFV 273
Q H++ V V F+ + AS D + +W + + T TL + Q V++V
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 274 AWSP--DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT 331
+ P D ++T + +K+WD +T C T H VS + P ++ GS D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED- 249
Query: 332 EKGIFMCDCDGNEIKAWRGT--RIPKVLD--------LAVTPDG-ENLISVLSDKDIRIL 380
+K W + ++ K L+ +A P G +N I+ D +L
Sbjct: 250 -----------GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298
Query: 381 NLG 383
+LG
Sbjct: 299 SLG 301
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE-ILSGHSMTVNCVSWNPKRPKMLASA 500
IRS ++ SGS++ + +WN N+ +E GH V CV++NPK P AS
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159
Query: 501 SDDHTIRIWGPCQSS 515
D T+++W QS+
Sbjct: 160 CLDRTVKVWSLGQST 174
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 108/258 (41%), Gaps = 8/258 (3%)
Query: 256 KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSC 315
KL +K T + + V + + P + +LT + ++LW+ ET + + V +
Sbjct: 2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAG 61
Query: 316 AWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK 375
+ ++ GS D +F + G ++ + + +AV P ++S D
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNT-GEKVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 376 DIRILNL-GTYAERVISEEHPITSLSVSVDCKN---FIVNLNSQEIHMWDVAGKWEKPFK 431
+++ N +A E H + V+ + K+ F + + +W + G+ F
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-GQSTPNFT 178
Query: 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 491
T + + D ++ + S++ I IW+ + + L GH V+ ++P
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Query: 492 KRPKMLASASDDHTIRIW 509
P ++ S S+D T++IW
Sbjct: 239 TLP-IIISGSEDGTLKIW 255
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 30/183 (16%)
Query: 216 QILTEHKNEVWFVQFS-NNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFV 273
Q H++ V V F+ + AS D + +W + + T TL + Q V++V
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 274 AWSP--DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT 331
+ P D ++T + +K+WD +T C T H VS + P ++ GS D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED- 249
Query: 332 EKGIFMCDCDGNEIKAWRGT--RIPKVLD--------LAVTPDG-ENLISVLSDKDIRIL 380
+K W + ++ K L+ +A P G +N I+ D +L
Sbjct: 250 -----------GTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298
Query: 381 NLG 383
+LG
Sbjct: 299 SLG 301
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 232 NNGEYLASSSSDCSAIIWKVLEDSKLTLKH-----TLRSHQNPVSFVAWSPDDTK-LLTC 285
+N +AS S DC+ ++W++ D L L TL H V VAW P LL+
Sbjct: 92 HNDNVIASGSEDCTVMVWEI-PDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 286 GNAEVLKLWDVETGICKHTFGD--HGFIVSSCAWFPDSKRLVCGS 328
G V+ +WDV TG T G H + S W D L+C S
Sbjct: 151 GXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA-LICTS 194
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 454 IASGSENSQIYIWNRRNS-------KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTI 506
IASGSE+ + +W + +P+ L GH+ V V+W+P +L SA D+ I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 507 RIW 509
+W
Sbjct: 157 LVW 159
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 469 RNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
R K + ++ GH+ V ++W P ++AS S+D T+ +W
Sbjct: 69 RVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVW 109
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 123/311 (39%), Gaps = 51/311 (16%)
Query: 219 TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD 278
T H++ + Q G LA+ SSD S I+ V ++ + LR H+ PV VAW+
Sbjct: 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIA-DLRGHEGPVWQVAWAHP 68
Query: 279 --DTKLLTCGNAEVLKLWDVETGICK--HTFGDHGFIVSSCAWFPDSKRLV--CGSSDTE 332
L +C + +W E G + H H V+S W P L+ CGSSD
Sbjct: 69 MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128
Query: 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISE 392
+ L T +G+ + +++ N ++A V+
Sbjct: 129 ISL-----------------------LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG 165
Query: 393 ---EHP------ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ-NKYVI 442
+HP S C N I +E G+W++ K HS + V
Sbjct: 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE------DGQWKEEQKLEAHSDWVRDVA 219
Query: 443 RSCFGGLDGTFIASGSENSQIYIWN----RRNSKPIEILSGHSMTVNCVSWNPKRPKMLA 498
+ GL + IAS S++ +++IW N+ ++L + V VSW+ +LA
Sbjct: 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT-ANILA 278
Query: 499 SASDDHTIRIW 509
+ D+ + +W
Sbjct: 279 VSGGDNKVTLW 289
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN---SKPIEILSGHSMTVNCVS 488
+TGH+ V + L + S +++ ++ IW+ RN SKP + H+ VNC+S
Sbjct: 227 FTGHT--AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS 284
Query: 489 WNPKRPKMLASASDDHTIRIW 509
+NP +LA+ S D T+ +W
Sbjct: 285 FNPYSEFILATGSADKTVALW 305
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 109/269 (40%), Gaps = 61/269 (22%)
Query: 263 LRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGICKH-------TFGDHGFIVSS 314
LR HQ ++W+P+ + LL+ + + LWD+ +H F H +V
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 315 CAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374
AW + L +D +K + + D N T P A T
Sbjct: 237 VAWHLLHESLFGSVADDQK-LMIWDTRNN------NTSKPSHTVDAHT------------ 277
Query: 375 KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG 434
++ L+ Y+E +++ ++++ D +N + L+S E H ++ +++
Sbjct: 278 AEVNCLSFNPYSEFILATGSADKTVAL-WDLRNLKLKLHSFESHKDEIFQ-----VQWSP 331
Query: 435 HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN-----------RRNSKPIEIL---SGH 480
H++ T +AS + ++++W+ P E+L GH
Sbjct: 332 HNE--------------TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 377
Query: 481 SMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+ ++ SWNP P ++ S S+D+ +++W
Sbjct: 378 TAKISDFSWNPNEPWIICSVSEDNIMQVW 406
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 237 LASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE-VLKLWD 295
S + D +IW ++ HT+ +H V+ ++++P +L G+A+ + LWD
Sbjct: 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306
Query: 296 VETGICK-HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC-------------D 341
+ K H+F H + W P ++ ++ SS T++ + + D D
Sbjct: 307 LRNLKLKLHSFESHKDEIFQVQWSPHNETILA-SSGTDRRLHVWDLSKIGEEQSTEDAED 365
Query: 342 G-NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHP 395
G E+ G K+ D + P+ +I +S+ + I+ + AE V ++E P
Sbjct: 366 GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN--IMQVWQMAENVYNDEEP 418
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE------- 475
+G+ + + GH + Y + S L+G ++ S S++ I +W+ N+ P E
Sbjct: 168 SGECQPDLRLRGHQKEGYGL-SWNPNLNG-YLLSASDDHTICLWDI-NATPKEHRVIDAK 224
Query: 476 -ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
I +GH+ V V+W+ + S +DD + IW
Sbjct: 225 NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
+ L H + + FS + + L ++S D I+ V L TL H + V VA
Sbjct: 199 LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV---QHANLAGTLSGHASWVLNVA 255
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKG 334
+ PDDT ++ + + +K+WDV T C HTF DH V + + ++V D E
Sbjct: 256 FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIH 315
Query: 335 IFMC 338
I+ C
Sbjct: 316 IYDC 319
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 228 VQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN 287
+ +S +G+YLAS + D I + + + L HTL H P+ + +SPD L+T +
Sbjct: 170 IAYSPDGKYLASGAIDG---IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 288 AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRL 324
+K++DV+ T H V + A+ PD
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 11/168 (6%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRS-HQNPVSF--VA 274
L H+ V V S+ ASSS D +W LE+ K ++S PV +A
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD-LENGK-----QIKSIDAGPVDAWTLA 129
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKG 334
+SPD L T + + ++ VE+G +++ G + S A+ PD K L G+ D
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 335 IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL 382
IF G + G +P + L +PD + L++ D I+I ++
Sbjct: 190 IFDI-ATGKLLHTLEGHAMP-IRSLTFSPDSQLLVTASDDGYIKIYDV 235
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 102/277 (36%), Gaps = 55/277 (19%)
Query: 221 HKNEVWFVQFSNN----GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWS 276
H + +W V + N E + + S D +WK D +L L+ +L HQ V V S
Sbjct: 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWK-WRDERLDLQWSLEGHQLGVVSVDIS 89
Query: 277 PDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF 336
+ ++LWD+E G + + A+ PDS+ L G+ + IF
Sbjct: 90 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 149
Query: 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEH-- 394
+ E TR +L +A +PDG+ L S D I I ++ T E H
Sbjct: 150 GVESGKKEYSL--DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM 207
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI 454
PI SL+ S D +
Sbjct: 208 PIRSLTFSP----------------------------------------------DSQLL 221
Query: 455 ASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 491
+ S++ I I++ +++ LSGH+ V V++ P
Sbjct: 222 VTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 74/139 (53%), Gaps = 9/139 (6%)
Query: 374 DKDIRILNLGTYAERVISEEHPITS--LSVSVDCKNFIVNLNSQEIHMWDV-AGKWEKPF 430
D IR+ +L + + P+ + L+ S D + + +++++ V +GK E
Sbjct: 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE--- 157
Query: 431 KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWN 490
Y+ ++ K+++ + DG ++ASG+ + I I++ K + L GH+M + ++++
Sbjct: 158 -YSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS 215
Query: 491 PKRPKMLASASDDHTIRIW 509
P ++L +ASDD I+I+
Sbjct: 216 PDS-QLLVTASDDGYIKIY 233
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN---SKPIEILSGHSMTVNCVS 488
+TGH+ V + L + S +++ ++ IW+ RN SKP + H+ VNC+S
Sbjct: 229 FTGHT--AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS 286
Query: 489 WNPKRPKMLASASDDHTIRIW 509
+NP +LA+ S D T+ +W
Sbjct: 287 FNPYSEFILATGSADKTVALW 307
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 109/269 (40%), Gaps = 61/269 (22%)
Query: 263 LRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGICKH-------TFGDHGFIVSS 314
LR HQ ++W+P+ + LL+ + + LWD+ +H F H +V
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 315 CAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374
AW + L +D +K + + D N T P A T
Sbjct: 239 VAWHLLHESLFGSVADDQK-LMIWDTRNN------NTSKPSHTVDAHT------------ 279
Query: 375 KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG 434
++ L+ Y+E +++ ++++ D +N + L+S E H ++ +++
Sbjct: 280 AEVNCLSFNPYSEFILATGSADKTVAL-WDLRNLKLKLHSFESHKDEIFQ-----VQWSP 333
Query: 435 HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN-----------RRNSKPIEIL---SGH 480
H++ T +AS + ++++W+ P E+L GH
Sbjct: 334 HNE--------------TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 379
Query: 481 SMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+ ++ SWNP P ++ S S+D+ +++W
Sbjct: 380 TAKISDFSWNPNEPWIICSVSEDNIMQVW 408
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 237 LASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE-VLKLWD 295
S + D +IW ++ HT+ +H V+ ++++P +L G+A+ + LWD
Sbjct: 249 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 308
Query: 296 VETGICK-HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC-------------D 341
+ K H+F H + W P ++ ++ SS T++ + + D D
Sbjct: 309 LRNLKLKLHSFESHKDEIFQVQWSPHNETILA-SSGTDRRLHVWDLSKIGEEQSTEDAED 367
Query: 342 G-NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHP 395
G E+ G K+ D + P+ +I +S+ + I+ + AE V ++E P
Sbjct: 368 GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN--IMQVWQMAENVYNDEEP 420
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE------- 475
+G+ + + GH + Y + S L+G ++ S S++ I +W+ N+ P E
Sbjct: 170 SGECQPDLRLRGHQKEGYGL-SWNPNLNG-YLLSASDDHTICLWDI-NATPKEHRVIDAK 226
Query: 476 -ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
I +GH+ V V+W+ + S +DD + IW
Sbjct: 227 NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 261
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 6/158 (3%)
Query: 356 VLDLAVTPDGENLISVLSDKDIRILNL--GTYAERVISEEHPITSLSVSVDCKNFIVNLN 413
V D+ ++ DG+ +S D ++R+ +L G R + + S++ S+D + +
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 414 SQEIHMWDVAGKWEKPFKYTGHSQNKYV--IRSCFGGLDGTFIASGSENSQIYIWNRRNS 471
+ I +W+ G+ + G +V +R L T I S S + + +WN N
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT-IVSASWDKTVKVWNLSNC 551
Query: 472 KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
K L+GH+ V+ V+ +P + AS D + +W
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLW 588
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 232 NNGEYLASSSSDCSAIIWKVLEDSKL--TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE 289
+N + + S+S D S I+WK+ +D K + L H + V V S D L+
Sbjct: 393 DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452
Query: 290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD 330
L+LWD+ G+ F H V S A+ D++++V S D
Sbjct: 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD 493
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 28/186 (15%)
Query: 221 HKNEVWFVQFSNNG--EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD 278
H++ V V+FS N + S+S D + +W + S L+ TL H VS VA SPD
Sbjct: 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL---SNCKLRSTLAGHTGYVSTVAVSPD 572
Query: 279 DTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMC 338
+ + G V+ LWD+ G ++ + I + C F ++ +C + TE GI +
Sbjct: 573 GSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC--FSPNRYWLCAA--TEHGIKIW 628
Query: 339 DCDGNEI-------------------KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI 379
D + I A ++ L + DG L S +D IR+
Sbjct: 629 DLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688
Query: 380 LNLGTY 385
+G Y
Sbjct: 689 WGIGRY 694
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT 280
H +V V FS + + S+S D + +W L + K T+ H++ VS V +SP+
Sbjct: 471 HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530
Query: 281 K--LLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD 330
+ +++ + +K+W++ + T H VS+ A PD G D
Sbjct: 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
LT H + V V S++G++ S S D +W + + H V VA+S
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL---AAGVSTRRFVGHTKDVLSVAFSL 482
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGD----HGFIVSSCAWFPDSKRLVCGSSDTEK 333
D+ ++++ +KLW+ G CK+T + H VS + P++ + S+ +K
Sbjct: 483 DNRQIVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK 541
Query: 334 GIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG 365
+ + + ++++ V +AV+PDG
Sbjct: 542 TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 44/267 (16%)
Query: 237 LASSSSDCSAIIWKVL-EDSKLTLK-HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294
L S+S D + I WK+ +D K + + + H + V + D L+ + L+LW
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP 354
DV TG F H V S + ++ GS D IK W
Sbjct: 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD------------KTIKVW------ 134
Query: 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS 414
T G+ L ++L D +S+ + + D I N
Sbjct: 135 -------TIKGQCLATLLGHNDW------------VSQVRVVPNEKADDDSVTIISAGND 175
Query: 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI 474
+ + W++ +++ + GH+ N I + DGT IAS ++ +I +WN K +
Sbjct: 176 KMVKAWNL-NQFQIEADFIGHNSN---INTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 475 EILSGHSMTVNCVSWNPKRPKMLASAS 501
LS V ++++P R + A+ +
Sbjct: 232 YTLSAQD-EVFSLAFSPNRYWLAAATA 257
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 396 ITSLSVSVDCKNFIVNLNSQEIHM-WDVAG---KWEKPFK-YTGHSQNKYVIRSCFGGLD 450
+TSL+ S N +++ + + + W + G K+ P + + GHS ++++ C D
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTAD 76
Query: 451 GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW- 509
G + S S + + +W+ + + GH V V + K+ M+ S S D TI++W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWT 135
Query: 510 --GPCQSS 515
G C ++
Sbjct: 136 IKGQCLAT 143
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 85/226 (37%), Gaps = 24/226 (10%)
Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
ET Q HK++V V + S S D + +W + K TL H + VS
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQ 153
Query: 273 VAWSP------DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVC 326
V P D +++ GN +++K W++ + F H +++ PD +
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 327 GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT-- 384
D E I + + + + + +V LA +P+ ++ + I++ +L
Sbjct: 214 AGKDGE--IMLWNLAAKK-AMYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQY 269
Query: 385 --------YAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV 422
+A + E SL+ S D + I +W V
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 8/159 (5%)
Query: 356 VLDLAVTPDGENLISVLSDKDIRILNLGT--YAERVISEEHPITSLSVSVDCKNFIVNLN 413
V D +T DG +S DK +R+ ++ T +R + + + S+ + I
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 414 SQEIHMWDVAGKWEKPFKYTGHS---QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN 470
+ I +W + G+ GH+ V+ + D I S + + WN
Sbjct: 128 DKTIKVWTIKGQCLATL--LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 471 SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+ GH+ +N ++ +P ++ASA D I +W
Sbjct: 186 FQIEADFIGHNSNINTLTASPD-GTLIASAGKDGEIMLW 223
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 6/124 (4%)
Query: 266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLV 325
H + ++ + SPD T + + G + LW++ +T + S A+ P+ L
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLA 253
Query: 326 CGSSDTEKGI-----FMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRIL 380
++ K ++ D E + P + LA + DG+ L + +D IR+
Sbjct: 254 AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Query: 381 NLGT 384
+ T
Sbjct: 314 QVMT 317
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 79/211 (37%), Gaps = 8/211 (3%)
Query: 260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFP 319
K ++ H N +S +++ D ++LT LWDVE+G +F HG V P
Sbjct: 147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206
Query: 320 DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI 379
S +K + D + T V + P G+ S D R+
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Query: 380 LNLGTYAERVISEEHPI----TSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGH 435
+L E I + I +S+ S+ + N I++WDV K + GH
Sbjct: 267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL-KGSRVSILFGH 325
Query: 436 SQNKYVIRSCFGGLDGTFIASGSENSQIYIW 466
+R DGT SGS + + +W
Sbjct: 326 ENRVSTLRV---SPDGTAFCSGSWDHTLRVW 353
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/254 (18%), Positives = 92/254 (36%), Gaps = 41/254 (16%)
Query: 257 LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCA 316
+ + TL+ H N V + W D ++++ + +WD T +H V +CA
Sbjct: 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA 113
Query: 317 WFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKD 376
+ P + CG D + ++ D NE
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTFDKNE-------------------------------- 141
Query: 377 IRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV-AGKWEKPFKYTGH 435
N+ + V + +++ S + + +WDV +G+ + F GH
Sbjct: 142 ----NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH--GH 195
Query: 436 SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPK 495
+ + TF++ G + + +W+ R+ + ++ H VN V + P
Sbjct: 196 GADVLCLDLAPSETGNTFVSGGCDKKAM-VWDMRSGQCVQAFETHESDVNSVRYYPS-GD 253
Query: 496 MLASASDDHTIRIW 509
AS SDD T R++
Sbjct: 254 AFASGSDDATCRLY 267
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 44/267 (16%)
Query: 237 LASSSSDCSAIIWKVL-EDSKLTLK-HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294
L S+S D + I WK+ +D K + + + H + V + D L+ + L+LW
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP 354
DV TG F H V S + ++ GS D IK W
Sbjct: 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD------------KTIKVW------ 134
Query: 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS 414
T G+ L ++L D +S+ + + D I N
Sbjct: 135 -------TIKGQCLATLLGHNDW------------VSQVRVVPNEKADDDSVTIISAGND 175
Query: 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI 474
+ + W++ +++ + GH+ N I + DGT IAS ++ +I +WN K +
Sbjct: 176 KMVKAWNL-NQFQIEADFIGHNSN---INTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 475 EILSGHSMTVNCVSWNPKRPKMLASAS 501
LS V ++++P R + A+ +
Sbjct: 232 YTLSAQD-EVFSLAFSPNRYWLAAATA 257
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 396 ITSLSVSVDCKNFIVNLNSQEIHM-WDVAG---KWEKPFK-YTGHSQNKYVIRSCFGGLD 450
+TSL+ S N +++ + + + W + G K+ P + + GHS ++++ C D
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTAD 76
Query: 451 GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW- 509
G + S S + + +W+ + + GH V V + K+ M+ S S D TI++W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWT 135
Query: 510 --GPCQSS 515
G C ++
Sbjct: 136 IKGQCLAT 143
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 85/226 (37%), Gaps = 24/226 (10%)
Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
ET Q HK++V V + S S D + +W + K TL H + VS
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQ 153
Query: 273 VAWSP------DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVC 326
V P D +++ GN +++K W++ + F H +++ PD +
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 327 GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT-- 384
D E I + + + + + +V LA +P+ ++ + I++ +L
Sbjct: 214 AGKDGE--IMLWNLAAKK-AMYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQY 269
Query: 385 --------YAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV 422
+A + E SL+ S D + I +W V
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 8/159 (5%)
Query: 356 VLDLAVTPDGENLISVLSDKDIRILNLGT--YAERVISEEHPITSLSVSVDCKNFIVNLN 413
V D +T DG +S DK +R+ ++ T +R + + + S+ + I
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 414 SQEIHMWDVAGKWEKPFKYTGHS---QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN 470
+ I +W + G+ GH+ V+ + D I S + + WN
Sbjct: 128 DKTIKVWTIKGQCLATL--LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 471 SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+ GH+ +N ++ +P ++ASA D I +W
Sbjct: 186 FQIEADFIGHNSNINTLTASPD-GTLIASAGKDGEIMLW 223
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 6/124 (4%)
Query: 266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLV 325
H + ++ + SPD T + + G + LW++ +T + S A+ P+ L
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLA 253
Query: 326 CGSSDTEKGI-----FMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRIL 380
++ K ++ D E + P + LA + DG+ L + +D IR+
Sbjct: 254 AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Query: 381 NLGT 384
+ T
Sbjct: 314 QVMT 317
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 232 NNGEYLASSSSDCSAIIWKVLEDSKLTLKH-----TLRSHQNPVSFVAWSPDDTK-LLTC 285
+N +AS S DC+ ++W++ D L L TL H V VAW P LL+
Sbjct: 92 HNDNVIASGSEDCTVMVWEI-PDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 286 GNAEVLKLWDVETGICKHTFGD--HGFIVSSCAWFPDSKRLVCGS 328
G V+ +WDV TG T G H + S W D L+C S
Sbjct: 151 GCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA-LICTS 194
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 454 IASGSENSQIYIWNRRNS-------KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTI 506
IASGSE+ + +W + +P+ L GH+ V V+W+P +L SA D+ I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 507 RIW 509
+W
Sbjct: 157 LVW 159
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 469 RNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
R K + ++ GH+ V ++W P ++AS S+D T+ +W
Sbjct: 69 RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVW 109
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 44/267 (16%)
Query: 237 LASSSSDCSAIIWKVL-EDSKLTLK-HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294
L S+S D + I WK+ +D K + + + H + V + D L+ + L+LW
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP 354
DV TG F H V S + ++ GS D IK W
Sbjct: 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD------------KTIKVW------ 134
Query: 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS 414
T G+ L ++L D +S+ + + D I N
Sbjct: 135 -------TIKGQCLATLLGHNDW------------VSQVRVVPNEKADDDSVTIISAGND 175
Query: 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI 474
+ + W++ +++ + GH+ N I + DGT IAS ++ +I +WN K +
Sbjct: 176 KMVKAWNL-NQFQIEADFIGHNSN---INTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 475 EILSGHSMTVNCVSWNPKRPKMLASAS 501
LS V ++++P R + A+ +
Sbjct: 232 YTLSAQD-EVFSLAFSPNRYWLAAATA 257
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 396 ITSLSVSVDCKNFIVNLNSQEIHM-WDVAG---KWEKPFK-YTGHSQNKYVIRSCFGGLD 450
+TSL+ S N +++ + + + W + G K+ P + + GHS ++++ C D
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTAD 76
Query: 451 GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW- 509
G + S S + + +W+ + + GH V V + K+ M+ S S D TI++W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWT 135
Query: 510 --GPCQSS 515
G C ++
Sbjct: 136 IKGQCLAT 143
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 85/226 (37%), Gaps = 24/226 (10%)
Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
ET Q HK++V V + S S D + +W + K TL H + VS
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQ 153
Query: 273 VAWSP------DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVC 326
V P D +++ GN +++K W++ + F H +++ PD +
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 327 GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT-- 384
D E I + + + + + +V LA +P+ ++ + I++ +L
Sbjct: 214 AGKDGE--IMLWNLAAKK-AMYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQY 269
Query: 385 --------YAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV 422
+A + E SL+ S D + I +W V
Sbjct: 270 LVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 8/159 (5%)
Query: 356 VLDLAVTPDGENLISVLSDKDIRILNLGT--YAERVISEEHPITSLSVSVDCKNFIVNLN 413
V D +T DG +S DK +R+ ++ T +R + + + S+ + I
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 414 SQEIHMWDVAGKWEKPFKYTGHS---QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN 470
+ I +W + G+ GH+ V+ + D I S + + WN
Sbjct: 128 DKTIKVWTIKGQCLATL--LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 471 SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+ GH+ +N ++ +P ++ASA D I +W
Sbjct: 186 FQIEADFIGHNSNINTLTASPD-GTLIASAGKDGEIMLW 223
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 6/124 (4%)
Query: 266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLV 325
H + ++ + SPD T + + G + LW++ +T + S A+ P+ L
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLA 253
Query: 326 CGSSDTEKGI-----FMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRIL 380
++ K ++ D E + P + LA + DG+ L + +D IR+
Sbjct: 254 AATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Query: 381 NLGT 384
+ T
Sbjct: 314 QVMT 317
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 44/267 (16%)
Query: 237 LASSSSDCSAIIWKVL-EDSKLTLK-HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294
L S+S D + I WK+ +D K + + + H + V + D L+ + L+LW
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 86
Query: 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP 354
DV TG F H V S + ++ GS D IK W
Sbjct: 87 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD------------KTIKVW------ 128
Query: 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS 414
T G+ L ++L D +S+ + + D I N
Sbjct: 129 -------TIKGQCLATLLGHNDW------------VSQVRVVPNEKADDDSVTIISAGND 169
Query: 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI 474
+ + W++ +++ + GH+ N I + DGT IAS ++ +I +WN K +
Sbjct: 170 KMVKAWNL-NQFQIEADFIGHNSN---INTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 225
Query: 475 EILSGHSMTVNCVSWNPKRPKMLASAS 501
LS V ++++P R + A+ +
Sbjct: 226 YTLSAQD-EVFSLAFSPNRYWLAAATA 251
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 396 ITSLSVSVDCKNFIVNLNSQEIHM-WDVAG---KWEKPFK-YTGHSQNKYVIRSCFGGLD 450
+TSL+ S N +++ + + + W + G K+ P + + GHS ++++ C D
Sbjct: 14 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTAD 70
Query: 451 GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW- 509
G + S S + + +W+ + + GH V V + K+ M+ S S D TI++W
Sbjct: 71 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWT 129
Query: 510 --GPCQSS 515
G C ++
Sbjct: 130 IKGQCLAT 137
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 8/159 (5%)
Query: 356 VLDLAVTPDGENLISVLSDKDIRILNLGT--YAERVISEEHPITSLSVSVDCKNFIVNLN 413
V D +T DG +S DK +R+ ++ T +R + + + S+ + I
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 121
Query: 414 SQEIHMWDVAGKWEKPFKYTGHS---QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN 470
+ I +W + G+ GH+ V+ + D I S + + WN
Sbjct: 122 DKTIKVWTIKGQCLATL--LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 179
Query: 471 SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+ GH+ +N ++ +P ++ASA D I +W
Sbjct: 180 FQIEADFIGHNSNINTLTASPD-GTLIASAGKDGEIMLW 217
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/226 (20%), Positives = 85/226 (37%), Gaps = 24/226 (10%)
Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
ET Q HK++V V + S S D + +W + K TL H + VS
Sbjct: 92 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQ 147
Query: 273 VAWSP------DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVC 326
V P D +++ GN +++K W++ + F H +++ PD +
Sbjct: 148 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 207
Query: 327 GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT-- 384
D E I + + + + + +V LA +P+ ++ + I++ +L
Sbjct: 208 AGKDGE--IMLWNLAAKK-AMYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQY 263
Query: 385 --------YAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV 422
+A + E SL+ S D + I +W V
Sbjct: 264 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 6/124 (4%)
Query: 266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLV 325
H + ++ + SPD T + + G + LW++ +T + S A+ P+ L
Sbjct: 189 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLA 247
Query: 326 CGSSDTEKGI-----FMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRIL 380
++ K ++ D E + P + LA + DG+ L + +D IR+
Sbjct: 248 AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
Query: 381 NLGT 384
+ T
Sbjct: 308 QVMT 311
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 104/267 (38%), Gaps = 44/267 (16%)
Query: 237 LASSSSDCSAIIWKVL-EDSKLTLK-HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294
L S+S D + I WK+ +D K + + + H + V + D L+ + L+LW
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP 354
DV TG F H V S + ++ GS D IK W
Sbjct: 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD------------KTIKVW------ 134
Query: 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS 414
T G+ L ++L D +S+ + + D I N
Sbjct: 135 -------TIKGQCLATLLGHNDW------------VSQVRVVPNEKADDDSVTIISAGND 175
Query: 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI 474
+ + W++ +++ + GH+ N I + DGT IAS ++ +I +WN K +
Sbjct: 176 KMVKAWNL-NQFQIEADFIGHNSN---INTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231
Query: 475 EILSGHSMTVNCVSWNPKRPKMLASAS 501
LS V ++++P R + A+ +
Sbjct: 232 YTLSAQD-EVFSLAFSPNRYWLAAATA 257
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 396 ITSLSVSVDCKNFIVNLNSQEIHM-WDVAG---KWEKPFK-YTGHSQNKYVIRSCFGGLD 450
+TSL+ S N +++ + + + W + G K+ P + + GHS ++++ C D
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTAD 76
Query: 451 GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW- 509
G + S S + + +W+ + + GH V V + K+ M+ S S D TI++W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWT 135
Query: 510 --GPCQSS 515
G C ++
Sbjct: 136 IKGQCLAT 143
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 8/159 (5%)
Query: 356 VLDLAVTPDGENLISVLSDKDIRILNLGT--YAERVISEEHPITSLSVSVDCKNFIVNLN 413
V D +T DG +S DK +R+ ++ T +R + + + S+ + I
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 127
Query: 414 SQEIHMWDVAGKWEKPFKYTGHS---QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN 470
+ I +W + G+ GH+ V+ + D I S + + WN
Sbjct: 128 DKTIKVWTIKGQCLATL--LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 471 SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+ GH+ +N ++ +P ++ASA D I +W
Sbjct: 186 FQIEADFIGHNSNINTLTASPD-GTLIASAGKDGEIMLW 223
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 10/126 (7%)
Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
ET Q HK++V V + S S D + +W + K TL H + VS
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQ 153
Query: 273 VAWSP------DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVC 326
V P D +++ GN +++K W++ + F H +++ PD +
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 327 GSSDTE 332
D E
Sbjct: 214 AGKDGE 219
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLV 325
H + ++ + SPD T + + G + LW++ +T + S A+ P+ L
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS-LAFSPNRYWLA 253
Query: 326 CGSSDTEKGI-----FMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI 379
++ K ++ D E + P + LA + DG+ L + +D IR+
Sbjct: 254 AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN---SKPIEILSGHSMTVNCVS 488
+TGH+ V + L + S +++ ++ IW+ RN SKP + H+ VNC+S
Sbjct: 231 FTGHT--AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS 288
Query: 489 WNPKRPKMLASASDDHTIRIW 509
+NP +LA+ S D T+ +W
Sbjct: 289 FNPYSEFILATGSADKTVALW 309
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 109/269 (40%), Gaps = 61/269 (22%)
Query: 263 LRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGICKH-------TFGDHGFIVSS 314
LR HQ ++W+P+ + LL+ + + LWD+ +H F H +V
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 315 CAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374
AW + L +D +K + + D N T P A T
Sbjct: 241 VAWHLLHESLFGSVADDQK-LMIWDTRNN------NTSKPSHTVDAHT------------ 281
Query: 375 KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG 434
++ L+ Y+E +++ ++++ D +N + L+S E H ++ +++
Sbjct: 282 AEVNCLSFNPYSEFILATGSADKTVAL-WDLRNLKLKLHSFESHKDEIFQ-----VQWSP 335
Query: 435 HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN-----------RRNSKPIEIL---SGH 480
H++ T +AS + ++++W+ P E+L GH
Sbjct: 336 HNE--------------TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 381
Query: 481 SMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+ ++ SWNP P ++ S S+D+ +++W
Sbjct: 382 TAKISDFSWNPNEPWIICSVSEDNIMQVW 410
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 237 LASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE-VLKLWD 295
S + D +IW ++ HT+ +H V+ ++++P +L G+A+ + LWD
Sbjct: 251 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 310
Query: 296 VETGICK-HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC-------------D 341
+ K H+F H + W P ++ ++ SS T++ + + D D
Sbjct: 311 LRNLKLKLHSFESHKDEIFQVQWSPHNETILA-SSGTDRRLHVWDLSKIGEEQSTEDAED 369
Query: 342 G-NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHP 395
G E+ G K+ D + P+ +I +S+ + I+ + AE V ++E P
Sbjct: 370 GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN--IMQVWQMAENVYNDEEP 422
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE------- 475
+G+ + + GH + Y + S L+G ++ S S++ I +W+ N+ P E
Sbjct: 172 SGECQPDLRLRGHQKEGYGL-SWNPNLNG-YLLSASDDHTICLWDI-NATPKEHRVIDAK 228
Query: 476 -ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
I +GH+ V V+W+ + S +DD + IW
Sbjct: 229 NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 263
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN---SKPIEILSGHSMTVNCVS 488
+TGHS V + L + S +++ ++ IW+ R+ SKP ++ H+ VNC+S
Sbjct: 225 FTGHS--AVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLS 282
Query: 489 WNPKRPKMLASASDDHTIRIW 509
+NP +LA+ S D T+ +W
Sbjct: 283 FNPYSEFILATGSADKTVALW 303
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 18/140 (12%)
Query: 207 RDQIPTETVQILTEHKNEVWFVQFSNNGEY-LASSSSDCSAIIWKVLEDSKLTLKHTLRS 265
R ++ ++ H EV + F+ E+ LA+ S+D + +W L + KL L HT S
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD-LRNLKLKL-HTFES 317
Query: 266 HQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDV------------ETGICKHTF--GDHGF 310
H++ + V WSP +T L + G L +WD+ E G + F G H
Sbjct: 318 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377
Query: 311 IVSSCAWFPDSKRLVCGSSD 330
+S +W P+ ++C S+
Sbjct: 378 KISDFSWNPNEPWVICSVSE 397
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 103/269 (38%), Gaps = 61/269 (22%)
Query: 263 LRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGI-------CKHTFGDHGFIVSS 314
LR HQ ++W+ + LL+ + + LWD+ G K F H +V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 315 CAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374
AW + L +D +K + + D N T P L A T
Sbjct: 235 VAWHLLHESLFGSVADDQK-LMIWDTRSNT------TSKPSHLVDAHT------------ 275
Query: 375 KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG 434
++ L+ Y+E +++ ++++ D +N + L++ E H
Sbjct: 276 AEVNCLSFNPYSEFILATGSADKTVAL-WDLRNLKLKLHTFESH---------------- 318
Query: 435 HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN-----------RRNSKPIEIL---SGH 480
+ + + + T +AS + ++ +W+ P E+L GH
Sbjct: 319 ---KDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 375
Query: 481 SMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+ ++ SWNP P ++ S S+D+ ++IW
Sbjct: 376 TAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 19/173 (10%)
Query: 237 LASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE-VLKLWD 295
S + D +IW ++ H + +H V+ ++++P +L G+A+ + LWD
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 296 VETGICK-HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC-------------D 341
+ K HTF H + W P ++ ++ SS T++ + + D D
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILA-SSGTDRRLNVWDLSKIGEEQSAEDAED 363
Query: 342 G-NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEE 393
G E+ G K+ D + P+ +I +S+ + I+ + AE + ++E
Sbjct: 364 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN--IMQIWQMAENIYNDE 414
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 421 DVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE----- 475
D +G+ + GH + Y + S L G + S S++ + +W+ N+ P E
Sbjct: 164 DPSGECNPDLRLRGHQKEGYGL-SWNSNLSGHLL-SASDDHTVCLWDI-NAGPKEGKIVD 220
Query: 476 ---ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
I +GHS V V+W+ + S +DD + IW
Sbjct: 221 AKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIW 257
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN---SKPIEILSGHSMTVNCVS 488
+TGHS V + L + S +++ ++ IW+ R+ SKP ++ H+ VNC+S
Sbjct: 225 FTGHS--AVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLS 282
Query: 489 WNPKRPKMLASASDDHTIRIW 509
+NP +LA+ S D T+ +W
Sbjct: 283 FNPYSEFILATGSADKTVALW 303
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 18/140 (12%)
Query: 207 RDQIPTETVQILTEHKNEVWFVQFSNNGEY-LASSSSDCSAIIWKVLEDSKLTLKHTLRS 265
R ++ ++ H EV + F+ E+ LA+ S+D + +W L + KL L HT S
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD-LRNLKLKL-HTFES 317
Query: 266 HQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDV------------ETGICKHTF--GDHGF 310
H++ + V WSP +T L + G L +WD+ E G + F G H
Sbjct: 318 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377
Query: 311 IVSSCAWFPDSKRLVCGSSD 330
+S +W P+ ++C S+
Sbjct: 378 KISDFSWNPNEPWVICSVSE 397
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 102/269 (37%), Gaps = 61/269 (22%)
Query: 263 LRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGI-------CKHTFGDHGFIVSS 314
LR HQ ++W+ + LL+ + + LWD+ G K F H +V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 315 CAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374
AW + L +D +K + + D N T P L A T
Sbjct: 235 VAWHLLHESLFGSVADDQK-LXIWDTRSNT------TSKPSHLVDAHT------------ 275
Query: 375 KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG 434
++ L+ Y+E +++ ++++ D +N + L++ E H
Sbjct: 276 AEVNCLSFNPYSEFILATGSADKTVAL-WDLRNLKLKLHTFESH---------------- 318
Query: 435 HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN-----------RRNSKPIEIL---SGH 480
+ + + + T +AS + ++ +W+ P E+L GH
Sbjct: 319 ---KDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 375
Query: 481 SMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+ ++ SWNP P ++ S S+D+ +IW
Sbjct: 376 TAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 421 DVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE----- 475
D +G+ + GH + Y + S L G + S S++ + +W+ N+ P E
Sbjct: 164 DPSGECNPDLRLRGHQKEGYGL-SWNSNLSGHLL-SASDDHTVCLWDI-NAGPKEGKIVD 220
Query: 476 ---ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
I +GHS V V+W+ + S +DD + IW
Sbjct: 221 AKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIW 257
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 237 LASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE-VLKLWD 295
S + D IW ++ H + +H V+ ++++P +L G+A+ + LWD
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 296 VETGICK-HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCD 339
+ K HTF H + W P ++ ++ SS T++ + + D
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILA-SSGTDRRLNVWD 348
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/334 (21%), Positives = 130/334 (38%), Gaps = 53/334 (15%)
Query: 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKV--------------LEDSKLTL---KHTL 263
H V+ + +S +G +AS+S+D + IW V +ED +L + K L
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297
Query: 264 RS-----------------------HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300
S H ++ ++ S D L + + WD+ TGI
Sbjct: 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357
Query: 301 CKHTFGD-HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDL 359
F D H +++ D K + + KA + L L
Sbjct: 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 417
Query: 360 AVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFI-VNLNSQEIH 418
AV+ DG+ ++ K I I + G E IS +LS + K F+ V ++H
Sbjct: 418 AVSADGDIAVAACY-KHIAIYSHGKLTEVPISYNSSCVALS---NDKQFVAVGGQDSKVH 473
Query: 419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS 478
++ ++G K H I S +G F+ + ++ ++ ++ N+ + +
Sbjct: 474 VYKLSGASVSEVKTIVHPAE---ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN 530
Query: 479 G---HSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
H+ V CVSW+P + LA+ S D+++ +W
Sbjct: 531 SWTFHTAKVACVSWSPDNVR-LATGSLDNSVIVW 563
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 12/215 (5%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
LT + V F + + S SD + + + E K T H V V ++P
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTV--AIFEGPPFKFKSTFGEHTKFVHSVRYNP 200
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGD-------HGFIVSSCAWFPDSKRLVCGSSD 330
D + + G + L++ G F D H V W PD ++ S+D
Sbjct: 201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 260
Query: 331 TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILN--LGTYAER 388
I+ E GTRI L + + L+S+ ++ I +N LG+ +
Sbjct: 261 KTIKIWNVATLKVEKTIPVGTRIED-QQLGIIWTKQALVSISANGFINFVNPELGSIDQV 319
Query: 389 VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVA 423
IT+LS S D K I+ WD++
Sbjct: 320 RYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT 280
H E+ V FSNNG +L ++ I + V + +L ++ H V+ V+WSPD+
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549
Query: 281 KLLTCGNAEVLKLWDV 296
+L T + +W++
Sbjct: 550 RLATGSLDNSVIVWNM 565
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 211 PTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKL------TLKHTLR 264
P + EH V V+++ +G AS+ D + +++ ++ +K +LK+
Sbjct: 179 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV-- 236
Query: 265 SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET 298
+H V + WSPD TK+ + + +K+W+V T
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 6/169 (3%)
Query: 216 QILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW 275
+I TEH ++ + S +G Y AS + IW + + + LK T+ PV ++W
Sbjct: 53 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISW 111
Query: 276 SPDDTKLLTCGNA--EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK-RLVCGSSDTE 332
+ ++ G ++ +TG ++S + P R++ GS D
Sbjct: 112 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 171
Query: 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILN 381
IF + + K+ G V + PDG S D I + N
Sbjct: 172 VAIF--EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 28/126 (22%)
Query: 411 NLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV---------IRSCFG-----------GLD 450
NL Q M V K +PF+ S + V +S FG D
Sbjct: 142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD 201
Query: 451 GTFIASGSENSQIYIWNRRNSKPIEILS-------GHSMTVNCVSWNPKRPKMLASASDD 503
G+ AS + I ++N + + HS +V ++W+P K +ASAS D
Sbjct: 202 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IASASAD 260
Query: 504 HTIRIW 509
TI+IW
Sbjct: 261 KTIKIW 266
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 477 LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW-GP 511
L+G + +N V + P RP + S SDD+T+ I+ GP
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP 178
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 89/201 (44%), Gaps = 15/201 (7%)
Query: 237 LASSSSDCSAIIWKVLEDSK---LTLKH-TLRSHQNPVSFVAWSPDDTKLLTCGNAEVLK 292
L S S D + +IWK+ E+ + + H L H + VS +A S ++ ++ + L+
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 293 LWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF--MCDCDGNEIKA--- 347
LWD+ TG F H V S A+ PD+++++ ++ E ++ + +C + +
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 348 --WRG-TRIPKVLDLA--VTPDGENLISVLSDKDIRILNLGTYAERVI-SEEHPITSLSV 401
W R ++ A V P SV D +++ N + E + LS+
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSI 221
Query: 402 SVDCKNFIVNLNSQEIHMWDV 422
S + K +++ +WD+
Sbjct: 222 SPNGKYIATGGKDKKLLIWDI 242
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD 295
Y AS D +W ++ +++T ++H++ V+ ++ SP+ + T G + L +WD
Sbjct: 186 YFASVGWDGRLKVW----NTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Query: 296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD--------TEKGIFMCDCDGNEIKA 347
+ D G ++ A+ P + + G+ T+ +C + I
Sbjct: 242 ILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITK 301
Query: 348 WRGT--RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA 386
G + P+ LA G+ L + +D IR + T A
Sbjct: 302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 199 LYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLT 258
LYE+ G IP + LT H + V + S + SSS D + +W + T
Sbjct: 56 LYEEEQNGYFGIPHKA---LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG---T 109
Query: 259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT 304
HQ+ V VA+SPD+ ++L+ G +KLW++ G CK +
Sbjct: 110 TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI-LGECKFS 154
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 453 FIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW--- 509
F S S + + +W+ R + GH V V+++P ++L SA + I++W
Sbjct: 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNIL 148
Query: 510 GPCQSS 515
G C+ S
Sbjct: 149 GECKFS 154
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 103/267 (38%), Gaps = 44/267 (16%)
Query: 237 LASSSSDCSAIIWKVL-EDSKLTLK-HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294
L S+S D + I WK+ +D K + + + H + V + D L+ + L+LW
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP 354
DV TG F H V S + ++ GS D IK W
Sbjct: 93 DVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRD------------KTIKVW------ 134
Query: 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS 414
T G+ L ++L D +S+ + + D I N
Sbjct: 135 -------TIKGQCLATLLGHNDW------------VSQVRVVPNEKADDDSVTIISAGND 175
Query: 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI 474
+ + W++ +++ + GH+ N I + DGT IAS ++ +I +WN K
Sbjct: 176 KXVKAWNL-NQFQIEADFIGHNSN---INTLTASPDGTLIASAGKDGEIXLWNLAAKKAX 231
Query: 475 EILSGHSMTVNCVSWNPKRPKMLASAS 501
LS V ++++P R + A+ +
Sbjct: 232 YTLSAQD-EVFSLAFSPNRYWLAAATA 257
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 396 ITSLSVSVDCKNFIVNLNSQEIHM-WDVAG---KWEKPFK-YTGHSQNKYVIRSCFGGLD 450
+TSL+ S N +++ + + + W + G K+ P + + GHS ++++ C D
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTAD 76
Query: 451 GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW- 509
G + S S + + +W+ + + GH V V + K+ + S S D TI++W
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID-KKASXIISGSRDKTIKVWT 135
Query: 510 --GPC 512
G C
Sbjct: 136 IKGQC 140
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 8/159 (5%)
Query: 356 VLDLAVTPDGENLISVLSDKDIRILNLGT--YAERVISEEHPITSLSVSVDCKNFIVNLN 413
V D +T DG +S DK +R+ ++ T +R + + + S+ + I
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSR 127
Query: 414 SQEIHMWDVAGKWEKPFKYTGHS---QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN 470
+ I +W + G+ GH+ V+ + D I S + + WN
Sbjct: 128 DKTIKVWTIKGQCLATL--LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQ 185
Query: 471 SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+ GH+ +N ++ +P ++ASA D I +W
Sbjct: 186 FQIEADFIGHNSNINTLTASPD-GTLIASAGKDGEIXLW 223
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 83/226 (36%), Gaps = 24/226 (10%)
Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
ET Q HK++V V + S S D + +W + K TL H + VS
Sbjct: 98 ETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQ 153
Query: 273 VAWSP------DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVC 326
V P D +++ GN + +K W++ + F H +++ PD +
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 327 GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT-- 384
D E ++ + + + +V LA +P+ ++ + I++ +L
Sbjct: 214 AGKDGEIXLWNLAA---KKAXYTLSAQDEVFSLAFSPN-RYWLAAATATGIKVFSLDPQY 269
Query: 385 --------YAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV 422
+A + E SL+ S D + I +W V
Sbjct: 270 LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 6/124 (4%)
Query: 266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLV 325
H + ++ + SPD T + + G + LW++ +T + S A+ P+ L
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFS-LAFSPNRYWLA 253
Query: 326 CGSSDTEKGI-----FMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRIL 380
++ K ++ D E + P + LA + DG+ L + +D IR+
Sbjct: 254 AATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Query: 381 NLGT 384
+ T
Sbjct: 314 QVXT 317
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 95/257 (36%), Gaps = 50/257 (19%)
Query: 262 TLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDS 321
TL+ H V + W+P+ +++ L +W+ T H H V CA+ P+
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 322 KRLVCGSSDTEKGIF----MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDI 377
+ + CG D+ IF D DGN +P L + + D++
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGN---------MPVSRVLTGHKGYASSCQYVPDQET 171
Query: 378 RILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV-AGKWEKPFKY---T 433
R+ I Q +WDV G+ F +
Sbjct: 172 RL-----------------------------ITGSGDQTCVLWDVTTGQRISIFGSEFPS 202
Query: 434 GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR-NSKPIEILSGHSMTVNCVSWNPK 492
GH+ + V+ L+ SGS ++ + +W+ R S+ + GH +N V + P
Sbjct: 203 GHTAD--VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD 260
Query: 493 RPKMLASASDDHTIRIW 509
+ + SDD T R++
Sbjct: 261 GQR-FGTGSDDGTCRLF 276
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 176 LVETAVTSQIDSCQY--HNSSVA-------ISLYEDHCCGRDQIPTETVQILTEHKNEVW 226
L ETA I S + H S +A +S++ + + I+ H+NEV
Sbjct: 52 LDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK 111
Query: 227 FVQFSNNGEYLASSSSDCSAIIWKVLEDS-KLTLKHTLRSHQNPVSFVAWSPDDTKLLTC 285
V +SN+G YLA+ S D S IW+ E + L+ H V V W P + L +
Sbjct: 112 GVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS 171
Query: 286 GNAEVLKLW 294
+ +++W
Sbjct: 172 SYDDTVRIW 180
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 450 DGTFIASGSENSQIYIWNRRNSKP----IEILSGHSMTVNCVSWNPKRPKMLASASDDHT 505
DG ++A+ S + ++IW S I +L HS V V W+P +LAS+S D T
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDT 176
Query: 506 IRIW 509
+RIW
Sbjct: 177 VRIW 180
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 47/120 (39%), Gaps = 8/120 (6%)
Query: 219 TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL----RSHQNPVSFVA 274
T HK + V + + LA+ S D + IW E + T + L H+N V VA
Sbjct: 55 TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 275 WSPDDTKLLTCGNAEVLKLWDV----ETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD 330
WS D L TC + + +W+ E C +H V W P L S D
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 19/146 (13%)
Query: 379 ILNLGTYAERVISEEHPITSLSV-SVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ 437
I +L Y E++ S + L+ S D K +V++ + + DV + T H
Sbjct: 7 IKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDE-------TAH-- 57
Query: 438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP-------IEILSGHSMTVNCVSWN 490
K IRS + +A+GS +S + IW + S + I+ GH V V+W+
Sbjct: 58 -KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS 116
Query: 491 PKRPKMLASASDDHTIRIWGPCQSSE 516
LA+ S D ++ IW +S E
Sbjct: 117 -NDGYYLATCSRDKSVWIWETDESGE 141
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 16/83 (19%)
Query: 435 HSQN-KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS--KPIEILSGHSMTVNCVSWNP 491
HSQ+ K+VI L +AS S + + IW + + + +L+GH TV W+
Sbjct: 152 HSQDVKHVIWHPSEAL----LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV----WSS 203
Query: 492 KRPKM-----LASASDDHTIRIW 509
K L S SDD T+R+W
Sbjct: 204 DFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN---SKPIEILSGHSMTVNCVS 488
+TGH+ V + L + S +++ ++ IW+ R+ SKP + H+ VNC+S
Sbjct: 223 FTGHT--AVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLS 280
Query: 489 WNPKRPKMLASASDDHTIRIW 509
+NP +LA+ S D T+ +W
Sbjct: 281 FNPYSEFILATGSADKTVALW 301
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 72/166 (43%), Gaps = 25/166 (15%)
Query: 366 ENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDC------KNFIVNLNSQE--I 417
E+L ++D D +++ T + H + + + V+C FI+ S + +
Sbjct: 240 ESLFGSVAD-DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTV 298
Query: 418 HMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN---------- 467
+WD+ K + H + ++ + + T +AS + ++ +W+
Sbjct: 299 ALWDLRNLKLKLHSFESHKDEIFQVQ--WSPHNETILASSGTDRRLNVWDLSKIGEEQSP 356
Query: 468 -RRNSKPIEIL---SGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
P E+L GH+ ++ SWNP P ++ S S+D+ +++W
Sbjct: 357 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 19/179 (10%)
Query: 237 LASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE-VLKLWD 295
S + D +IW ++ H++ +H V+ ++++P +L G+A+ + LWD
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
Query: 296 VETGICK-HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC-------------D 341
+ K H+F H + W P ++ ++ SS T++ + + D D
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILA-SSGTDRRLNVWDLSKIGEEQSPEDAED 361
Query: 342 G-NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSL 399
G E+ G K+ D + P+ +I +S+ + I+ + AE + ++E P S+
Sbjct: 362 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDN--IMQVWQMAENIYNDEDPEGSV 418
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 477 LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
L GH +SWNP L SASDDHTI +W
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLW 205
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 421 DVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN----RRNSKPIE- 475
D +G+ + GH + Y + S L G + S S++ I +W+ + K ++
Sbjct: 162 DPSGECNPDLRLRGHQKEGYGL-SWNPNLSGHLL-SASDDHTICLWDISAVPKEGKVVDA 219
Query: 476 --ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
I +GH+ V VSW+ + S +DD + IW
Sbjct: 220 KTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIW 255
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 18/235 (7%)
Query: 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337
DD K+++ +K+WD T CK H V + D + ++ GSSD+ ++
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW- 198
Query: 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE---RVISEEH 394
D + E+ VL L + +++ D+ I + ++ + + R + H
Sbjct: 199 -DVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI 454
V D K + + I +W+ + E GH + +C D +
Sbjct: 256 RAAVNVVDFDDKYIVSASGDRTIKVWNTS-TCEFVRTLNGHKRGI----ACLQYRD-RLV 309
Query: 455 ASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
SGS ++ I +W+ + +L GH V C+ ++ KR + S + D I++W
Sbjct: 310 VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR---IVSGAYDGKIKVW 361
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 25/231 (10%)
Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
E + L H V ++F NNG + + S D S +W + + +TL+ L H+ V+
Sbjct: 204 EMLNTLIHHCEAVLHLRF-NNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 261
Query: 273 VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332
V + DD +++ +K+W+ T T H + +C + D + +V GSSD
Sbjct: 262 VDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI-ACLQYRD-RLVVSGSSDNT 317
Query: 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL---------- 382
++ +C G ++ G + L + D + ++S D I++ +L
Sbjct: 318 IRLWDIEC-GACLRVLEGH---EELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 373
Query: 383 GTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV----AGKWEKP 429
GT R + EH + D + + + I +WD A + E P
Sbjct: 374 GTLCLRTLV-EHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQAEPP 423
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 216 QILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW 275
+I H +E+ ++F +GE L SSS D IW V + S TL H+ V+ +A
Sbjct: 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN---PRTLIGHRATVTDIAI 189
Query: 276 SPDDTKLLTCGNAEVLKLWDVETGICKHTF 305
+L+ ++LW+ TG HTF
Sbjct: 190 IDRGRNVLSASLDGTIRLWECGTGTTIHTF 219
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 451 GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
G + S S++ Q+ IW+ ++ L GH TV ++ R + + SAS D TIR+W
Sbjct: 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI-IDRGRNVLSASLDGTIRLW 208
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 21/153 (13%)
Query: 250 KVLEDSKLTLKHTL-RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
KVL DS L+ + ++H + ++ + + P L++ LK+W V+ G T H
Sbjct: 122 KVL-DSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENL 368
V+ A + ++ S D ++ C G I + P DG N
Sbjct: 181 RATVTDIAIIDRGRNVLSASLDGTIRLWECGT-GTTIHTFNRKENPH--------DGVNS 231
Query: 369 ISVLSDKDIRI----------LNLGTYAERVIS 391
I++ D ++ L GTY + VI+
Sbjct: 232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 264
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277
LT H+ + V+++ G+ L S S D SA +W L +L TL H + WS
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTI----WSI 80
Query: 278 D---DTKLLTCGNAEV-LKLWDVETGIC 301
D TK G+A+ +KLWDV G C
Sbjct: 81 DVDCFTKYCVTGSADYSIKLWDVSNGQC 108
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 30/108 (27%)
Query: 411 NLNSQEIHMWDVAGKWEKPFKYTGH----SQNKYVIRSCFGGLDGTFIASGSENSQIYIW 466
NL Q HM K K TGH +Q KY +G + S S++S +W
Sbjct: 15 NLYFQGSHM--------KAIKLTGHERPLTQVKY-------NKEGDLLFSCSKDSSASVW 59
Query: 467 NRRNSKPIEILSGHSMT-----VNCVSWNPKRPKMLASASDDHTIRIW 509
N + + L GH+ T V+C + K + S D++I++W
Sbjct: 60 YSLNGERLGTLDGHTGTIWSIDVDCFT------KYCVTGSADYSIKLW 101
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 216 QILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW 275
+I H +E+ ++F +GE L SSS D IW V + S TL H+ V+ +A
Sbjct: 130 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN---PRTLIGHRATVTDIAI 186
Query: 276 SPDDTKLLTCGNAEVLKLWDVETGICKHTF 305
+L+ ++LW+ TG HTF
Sbjct: 187 IDRGRNVLSASLDGTIRLWECGTGTTIHTF 216
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 451 GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
G + S S++ Q+ IW+ ++ L GH TV ++ R + + SAS D TIR+W
Sbjct: 148 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI-IDRGRNVLSASLDGTIRLW 205
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 21/153 (13%)
Query: 250 KVLEDSKLTLKHTL-RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH 308
KVL DS L+ + ++H + ++ + + P L++ LK+W V+ G T H
Sbjct: 119 KVL-DSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 177
Query: 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENL 368
V+ A + ++ S D ++ C G I + P DG N
Sbjct: 178 RATVTDIAIIDRGRNVLSASLDGTIRLWECGT-GTTIHTFNRKENPH--------DGVNS 228
Query: 369 ISVLSDKDIRI----------LNLGTYAERVIS 391
I++ D ++ L GTY + VI+
Sbjct: 229 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 261
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 451 GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
G + SGS ++ + +W+ K + ILSGH+ + ++ +R + + SAS D TIRIW
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI-SASXDTTIRIW 337
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 34/232 (14%)
Query: 282 LLTCGNAEVLKLWDVETGICKHTFGDHGFIVS--SCAWFPDSKRLVCGSSDTEKGIFMCD 339
L++ +++WD++ G C H F H V + + K +V GS D ++
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 340 CDGNEIKAWRGTRIPKVLDLAVTPDGEN--LISVLSDKDIRILNLGTYAERVISEEHPIT 397
+ + P V TP+ EN + VL + + + V+S + T
Sbjct: 236 KESSVPDHGEEHDYPLVFH---TPE-ENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNT 291
Query: 398 SLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG 457
+ +WDVA + + + +GH+ Y S + S
Sbjct: 292 LI-------------------VWDVA-QXKCLYILSGHTDRIY---STIYDHERKRCISA 328
Query: 458 SENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
S ++ I IW+ N + L GH+ V + + K L SA+ D +IR W
Sbjct: 329 SXDTTIRIWDLENGELXYTLQGHTALVGLLRLS---DKFLVSAAADGSIRGW 377
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
V +L H V V S +G + S S D + I+W V + L + L H + +
Sbjct: 263 VGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCL---YILSGHTDRIYSTI 317
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIV 312
+ + + ++ +++WD+E G +T H +V
Sbjct: 318 YDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALV 355
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 47/104 (45%)
Query: 406 KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYI 465
K +V +S + +W++ K ++ ++++ DGT SG ++ + +
Sbjct: 106 KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165
Query: 466 WNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
W+ ++ + HS VNCV+ P + + S +D I +W
Sbjct: 166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 396 ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA 455
+ +LSV D + + +WD++ K Y HS + +C G D F++
Sbjct: 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-AVLKSYNAHSSEVNCVAAC-PGKDTIFLS 199
Query: 456 SGSENSQIYIWNRRNSKP---IEILSGHSMTVNCVSWNPKRPKMLA 498
G E+ +I +W+ R KP I+ + ++ + V+W+P++ A
Sbjct: 200 CG-EDGRILLWDTRKPKPATRIDFCASDTIPTS-VTWHPEKDDTFA 243
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP-D 278
EH + V + ++G S D S +W + + K LK + +H + V+ VA P
Sbjct: 137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ--KAVLK-SYNAHSSEVNCVAACPGK 193
Query: 279 DTKLLTCGNAEVLKLWDVE--TGICKHTFGDHGFIVSSCAWFPDS-KRLVCG 327
DT L+CG + LWD + F I +S W P+ CG
Sbjct: 194 DTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 213 ETVQILTEHKNEVWFVQFS-NNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVS 271
++ Q H + + +S ++ +LAS S DC+ + D+ + SH++ V+
Sbjct: 260 DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVL----DADFSEVFRDLSHRDFVT 315
Query: 272 FVAWSP-DDTKLLTCG 286
VAWSP D +K T G
Sbjct: 316 GVAWSPLDHSKFTTVG 331
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 22/166 (13%)
Query: 365 GENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSV----DCKNFIVNLNSQEIHMW 420
G L+S +D+ +R+ ++ + E H T + + + K + +H+W
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 421 ---------DVAGKWEKPFKYTGHSQNKYVIRSCFGGL--------DGTFIASGSENSQI 463
D + + P + +N Y + G + G + SGS ++ +
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 292
Query: 464 YIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+W+ K + ILSGH+ + ++ +R + + SAS D TIRIW
Sbjct: 293 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI-SASMDTTIRIW 337
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 34/232 (14%)
Query: 282 LLTCGNAEVLKLWDVETGICKHTFGDHGFIVS--SCAWFPDSKRLVCGSSDTEKGIFMCD 339
L++ +++WD++ G C H F H V + + K +V GS D
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD--------- 226
Query: 340 CDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKD--IRILNLGTYAERVISEEHPIT 397
N + W+ + V D D + + + +L + R +S I
Sbjct: 227 ---NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV 283
Query: 398 SLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG 457
VS N ++ +WDVA + + + +GH+ Y S + S
Sbjct: 284 ---VSGSYDNTLI--------VWDVA-QMKCLYILSGHTDRIY---STIYDHERKRCISA 328
Query: 458 SENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
S ++ I IW+ N + + L GH+ V + + K L SA+ D +IR W
Sbjct: 329 SMDTTIRIWDLENGELMYTLQGHTALVGLLRLS---DKFLVSAAADGSIRGW 377
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 449 LDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRI 508
+ ++ +G+++ I +++ N K + LSGH V + + +L S S D T+R+
Sbjct: 130 FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY--AHGGILVSGSTDRTVRV 187
Query: 509 W 509
W
Sbjct: 188 W 188
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
V +L H V V S +G + S S D + I+W V +++ + L H + +
Sbjct: 263 VGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDV---AQMKCLYILSGHTDRIYSTI 317
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIV 312
+ + + ++ +++WD+E G +T H +V
Sbjct: 318 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 355
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 453 FIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+A G+ ++ + + ++ IL GH + VSW+P+ +LA+AS D +++W
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLW 214
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 120/313 (38%), Gaps = 69/313 (22%)
Query: 221 HKNEVWFVQ-FSNNGEYLASSSSDCSAIIW--KVLEDSKL-TLKHTLRSHQNPVSFVAWS 276
H+ V VQ + ++ SSS D + +W L+ + + + T+ SH S
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHH-------MS 150
Query: 277 PDDTK--LLTCGN-AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS---- 329
P TK L+ G ++L D+++G C H H + + +W P ++ +S
Sbjct: 151 PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSR 210
Query: 330 ----DTEKG----IFMCDCDGNEIKAWRGTRIP---KVLDLAVTPDGENLISVLSDKDIR 378
D + I + +G + +A KV L T DG +L++V +D +R
Sbjct: 211 VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270
Query: 379 ILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN 438
+ N S + +N +VN V +K K+T
Sbjct: 271 LWN--------------------SSNGENTLVNYGK-------VCNNSKKGLKFT----- 298
Query: 439 KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLA 498
SC + F+ G S I ++ + + I +L GH TV+C + + L
Sbjct: 299 ----VSCGCSSEFVFVPYG---STIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF-QELY 350
Query: 499 SASDDHTIRIWGP 511
S S D I W P
Sbjct: 351 SGSRDCNILAWVP 363
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 216 QILTEHKNEVWFVQFSNNGEY-LASSSSDCSAIIWKVLEDSK--LTL-KHTLR------- 264
IL H+ E+ V +S +Y LA++S+D +W V S +TL +H +
Sbjct: 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES 239
Query: 265 ---SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG 299
+H V+ + ++ D LLT G ++LW+ G
Sbjct: 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 13/74 (17%)
Query: 449 LDGTFIASGSENSQIYIWNRRNSKPIEILSG-------------HSMTVNCVSWNPKRPK 495
++G ++ SG + I +++ NS + H +V V W P
Sbjct: 54 VEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113
Query: 496 MLASASDDHTIRIW 509
M S+S D T+++W
Sbjct: 114 MFTSSSFDKTLKVW 127
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIW------KVLEDSKLTLKHTLRSH 266
E + +L H V F +N + L S S DC+ + W V +D + T K L
Sbjct: 325 EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTKSQL--- 381
Query: 267 QNPVSFVAWSPDD 279
NP AWS D
Sbjct: 382 -NPAFEDAWSSSD 393
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 16/178 (8%)
Query: 345 IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILN-LGTYAERVISEEHPITSLSVSV 403
+ A G +V LA + DG ++++ + + ++R+ N G + PI S+ +
Sbjct: 100 LSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNK 159
Query: 404 DCKNFIVNLNSQEIH-MWDV-AGKWEKPF--KYTGHSQNKYVIRSCFGGL--------DG 451
D + I++++ + + +W+V +G + F K TG S S G L D
Sbjct: 160 DGTH-IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD 218
Query: 452 TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
F+ G + + I+++ P L GH ++ + +N K+L SASDD T+RIW
Sbjct: 219 KFVIPGPKGA-IFVYQITEKTPTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIW 274
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%)
Query: 251 VLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGF 310
V + ++ T L H P+S + ++ + LL+ + L++W G ++ F H
Sbjct: 231 VYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ 290
Query: 311 IVSSCAWFPDSKRLVC 326
+ S +W D K + C
Sbjct: 291 SIVSASWVGDDKVISC 306
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL 282
N+V + +S++G + + + +W + L + L H+ P+ V W+ D T +
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLW----NKTGALLNVLNFHRAPIVSVKWNKDGTHI 164
Query: 283 LTCGNAEVLKLWDVETGICKHTF 305
++ V LW+V +G F
Sbjct: 165 ISMDVENVTILWNVISGTVMQHF 187
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 218 LTEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLE-DSKLTLKHTLRSHQNPVSFVAW 275
L HK +V V + + +LA++S D + IW + + K + ++L H++PV+ +
Sbjct: 247 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL-PHRHPVNAACF 305
Query: 276 SPDDTKLLTCGNAEVLKL-----WDVETGICKHTFGDHGFIVS-SCAWFPDSKRLVCG 327
SPD +LLT +++ WD G+ H + AW P +V G
Sbjct: 306 SPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 363
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 218 LTEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLE-DSKLTLKHTLRSHQNPVSFVAW 275
L HK +V V + + +LA++S D + IW + + K + ++L H++PV+ +
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL-PHRHPVNAACF 304
Query: 276 SPDDTKLLTCGNAEVLKL-----WDVETGICKHTFGDHGFIVS-SCAWFPDSKRLVCG 327
SPD +LLT +++ WD G+ H + AW P +V G
Sbjct: 305 SPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 362
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 218 LTEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLE-DSKLTLKHTLRSHQNPVSFVAW 275
L HK +V V + + +LA++S D + IW + + K + ++L H++PV+ +
Sbjct: 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL-PHRHPVNAACF 304
Query: 276 SPDDTKLLTCGNAEVLKL-----WDVETGICKHTFGDHGFIVS-SCAWFPDSKRLVCG 327
SPD +LLT +++ WD G+ H + AW P +V G
Sbjct: 305 SPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 362
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 451 GTFIASGSENSQIYIWNRRNSK--PIEILSGHSMTVNCVSWNPKR--PKMLASASD 502
GT +AS S + ++ IW N + I + + HS +VN V W P P +L ++SD
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 20/148 (13%)
Query: 215 VQILTEHKNEVWFVQFSNN--GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
+ LT H+ VW V +++ G LAS S D +IWK E+ + + H V+
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE-ENGRWSQIAVHAVHSASVNS 104
Query: 273 VAWSPDDTK---LLTCGNAEVLKLWDVETGICKHTFGD-HGFIVSSCAWFP--------- 319
V W+P + L+ + +V + E G D H V+S +W P
Sbjct: 105 VQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 320 ----DSKRLVCGSSDTEKGIFMCDCDGN 343
+S++ V G +D I+ + D
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQ 192
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 99/288 (34%), Gaps = 86/288 (29%)
Query: 234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD--TKLLTCGNAEVL 291
G+ LA+ SSD + I++V E L TL H+ PV V W+ T L +C +
Sbjct: 21 GKRLATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 292 KLWDVETG----ICKHTFGDHGFIVSSCAWFPDS--KRLVCGSSDTEKGIFMCDCDGNEI 345
+W E G I H H V+S W P L+ SSD + + E
Sbjct: 80 LIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASSDGKVSVV-------EF 130
Query: 346 KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISE--EHPITSLSVSV 403
K GT P ++D +N ++A I E EH T
Sbjct: 131 KE-NGTTSPIIIDAHAIG----------------VNSASWAPATIEEDGEHNGTK----- 168
Query: 404 DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI 463
+ + F+ + +W KY +Q YV+ S
Sbjct: 169 ESRKFVTGGADNLVKIW----------KYNSDAQT-YVLEST------------------ 199
Query: 464 YIWNRRNSKPIEILSGHSMTVNCVSWNPK--RPKMLASASDDHTIRIW 509
L GHS V V+W+P LAS S D T IW
Sbjct: 200 -------------LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 451 GTFIASGSENSQIYIWNRRNSK--PIEILSGHSMTVNCVSWNPKR--PKMLASASD 502
GT +AS S + ++ IW N + I + + HS +VN V W P P +L ++SD
Sbjct: 67 GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSD 122
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 451 GTFIASGSENSQIYIWNRRNSK--PIEILSGHSMTVNCVSWNPKR--PKMLASASD 502
GT +AS S + ++ IW N + I + + HS +VN V W P P +L ++SD
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD 122
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 20/148 (13%)
Query: 215 VQILTEHKNEVWFVQFSNN--GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
+ LT H+ VW V +++ G LAS S D +IWK E+ + + H V+
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK-EENGRWSQIAVHAVHSASVNS 104
Query: 273 VAWSPDDTK---LLTCGNAEVLKLWDVETGICKHTFGD-HGFIVSSCAWFP--------- 319
V W+P + L+ + +V + E G D H V+S +W P
Sbjct: 105 VQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 320 ----DSKRLVCGSSDTEKGIFMCDCDGN 343
+S++ V G +D I+ + D
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQ 192
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 101/288 (35%), Gaps = 86/288 (29%)
Query: 234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD--TKLLTCGNAEVL 291
G+ +A+ SSD + I++V E L TL H+ PV V W+ T L +C +
Sbjct: 21 GKRMATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 292 KLWDVETG----ICKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDGNEI 345
+W E G I H H V+S W P L+ SSD + + E
Sbjct: 80 MIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPMLLVASSDGKVSVV-------EF 130
Query: 346 KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISE--EHPITSLSVSV 403
K GT P ++D + I V N ++A I E EH T
Sbjct: 131 KE-NGTTSPIIIDA-------HAIGV---------NSASWAPATIEEDGEHNGTK----- 168
Query: 404 DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI 463
+ + F+ + +W KY +Q YV+ S
Sbjct: 169 ESRKFVTGGADNLVKIW----------KYNSDAQT-YVLEST------------------ 199
Query: 464 YIWNRRNSKPIEILSGHSMTVNCVSWNPK--RPKMLASASDDHTIRIW 509
L GHS V V+W+P +AS S D T IW
Sbjct: 200 -------------LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 451 GTFIASGSENSQIYIWNRRNSK--PIEILSGHSMTVNCVSWNPKR--PKMLASASD 502
GT +AS S + ++ IW N + I + + HS +VN V W P P +L ++SD
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 20/148 (13%)
Query: 215 VQILTEHKNEVWFVQFSNN--GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
+ LT H+ VW V +++ G LAS S D +IWK E+ + + H V+
Sbjct: 48 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE-ENGRWSQIAVHAVHSASVNS 106
Query: 273 VAWSPDDTK---LLTCGNAEVLKLWDVETGICKHTFGD-HGFIVSSCAWFP--------- 319
V W+P + L+ + +V + E G D H V+S +W P
Sbjct: 107 VQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 166
Query: 320 ----DSKRLVCGSSDTEKGIFMCDCDGN 343
+S++ V G +D I+ + D
Sbjct: 167 NGTKESRKFVTGGADNLVKIWKYNSDAQ 194
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 101/288 (35%), Gaps = 86/288 (29%)
Query: 234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD--TKLLTCGNAEVL 291
G+ LA+ SSD + I++V E L TL H+ PV V W+ T L +C +
Sbjct: 23 GKRLATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81
Query: 292 KLWDVETG----ICKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDGNEI 345
+W E G I H H V+S W P L+ SSD + + E
Sbjct: 82 LIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASSDGKVSVV-------EF 132
Query: 346 KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISE--EHPITSLSVSV 403
K GT P ++D + I V N ++A I E EH T
Sbjct: 133 KE-NGTTSPIIIDA-------HAIGV---------NSASWAPATIEEDGEHNGTK----- 170
Query: 404 DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI 463
+ + F+ + +W KY +Q YV+ S
Sbjct: 171 ESRKFVTGGADNLVKIW----------KYNSDAQT-YVLEST------------------ 201
Query: 464 YIWNRRNSKPIEILSGHSMTVNCVSWNPK--RPKMLASASDDHTIRIW 509
L GHS V V+W+P LAS S D T IW
Sbjct: 202 -------------LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 451 GTFIASGSENSQIYIWNRRNSK--PIEILSGHSMTVNCVSWNPKR--PKMLASASD 502
GT +AS S + ++ IW N + I + + HS +VN V W P P +L ++SD
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 20/148 (13%)
Query: 215 VQILTEHKNEVWFVQFSNN--GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272
+ LT H+ VW V +++ G LAS S D +IWK E+ + + H V+
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE-ENGRWSQIAVHAVHSASVNS 104
Query: 273 VAWSPDDTK---LLTCGNAEVLKLWDVETGICKHTFGD-HGFIVSSCAWFP--------- 319
V W+P + L+ + +V + E G D H V+S +W P
Sbjct: 105 VQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 320 ----DSKRLVCGSSDTEKGIFMCDCDGN 343
+S++ V G +D I+ + D
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQ 192
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 101/288 (35%), Gaps = 86/288 (29%)
Query: 234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD--TKLLTCGNAEVL 291
G+ LA+ SSD + I++V E L TL H+ PV V W+ T L +C +
Sbjct: 21 GKRLATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 292 KLWDVETG----ICKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDGNEI 345
+W E G I H H V+S W P L+ SSD + + E
Sbjct: 80 LIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASSDGKVSVV-------EF 130
Query: 346 KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISE--EHPITSLSVSV 403
K GT P ++D + I V N ++A I E EH T
Sbjct: 131 KE-NGTTSPIIIDA-------HAIGV---------NSASWAPATIEEDGEHNGTK----- 168
Query: 404 DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI 463
+ + F+ + +W KY +Q YV+ S
Sbjct: 169 ESRKFVTGGADNLVKIW----------KYNSDAQT-YVLEST------------------ 199
Query: 464 YIWNRRNSKPIEILSGHSMTVNCVSWNPK--RPKMLASASDDHTIRIW 509
L GHS V V+W+P LAS S D T IW
Sbjct: 200 -------------LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 211 PTETVQILTEHKNEVWFVQFSNN---GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ 267
P + +++ + + + + FS G +L + S W+V +DS T+ + H
Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEV-QDSGQTIPKAQQMHT 86
Query: 268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVET 298
PV V WS D +K+ T + K+WD+ +
Sbjct: 87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSS 117
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 453 FIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+A I I N + I+ GH +N + ++P+ P +L S S DH +R+W
Sbjct: 86 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 142
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 210 IPTETVQILTEHKNEVWFVQF-SNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN 268
I + ++ H N + ++F + L S S D + +W + D+ + + + H++
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 161
Query: 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVET 298
V + K+++CG LKLW + +
Sbjct: 162 EVLSADYDLLGEKIMSCGMDHSLKLWRINS 191
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 453 FIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+A I I N + I+ GH +N + ++P+ P +L S S DH +R+W
Sbjct: 87 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 143
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 210 IPTETVQILTEHKNEVWFVQF-SNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN 268
I + ++ H N + ++F + L S S D + +W + D+ + + + H++
Sbjct: 103 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 162
Query: 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVET 298
V + K+++CG LKLW + +
Sbjct: 163 EVLSADYDLLGEKIMSCGMDHSLKLWRINS 192
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 453 FIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+A I I N + I+ GH +N + ++P+ P +L S S DH +R+W
Sbjct: 82 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 138
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 210 IPTETVQILTEHKNEVWFVQF-SNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN 268
I + ++ H N + ++F + L S S D + +W + D+ + + + H++
Sbjct: 98 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 157
Query: 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVET 298
V + K+++CG LKLW + +
Sbjct: 158 EVLSADYDLLGEKIMSCGMDHSLKLWRINS 187
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 453 FIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+A I I N + I+ GH +N + ++P+ P +L S S DH +R+W
Sbjct: 86 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 142
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 210 IPTETVQILTEHKNEVWFVQF-SNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN 268
I + ++ H N + ++F + L S S D + +W + D+ + + + H++
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 161
Query: 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVET 298
V + K+++CG LKLW + +
Sbjct: 162 EVLSADYDLLGEKIMSCGMDHSLKLWRINS 191
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 453 FIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
+A I I N + I+ GH +N + ++P+ P +L S S DH +R+W
Sbjct: 123 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 179
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 208 DQIPTETVQILTEHKNEVWFVQF-SNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSH 266
+ I + ++ H N + ++F + L S S D + +W + D+ + + + H
Sbjct: 137 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 196
Query: 267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET 298
++ V + K+++CG LKLW + +
Sbjct: 197 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 228
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGF-IVSSCA-WF 318
H L+ H V+ V W+PD +++TCG +W ++ K T + C W
Sbjct: 46 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 105
Query: 319 PDSKRLVCGS 328
P+ K+ GS
Sbjct: 106 PNEKKFAVGS 115
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
V L EH +V V ++ + + + +D +A +W + + LR ++ V
Sbjct: 45 VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR-AARCVR 103
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETG----ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD 330
W+P++ K + V+ + E +CKH V S W P+S L GS D
Sbjct: 104 WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163
Query: 331 TEKGIF 336
+ IF
Sbjct: 164 FKCRIF 169
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETG--ICKHTFGDHGFIVSSCAWFPDSKRLV- 325
P+S AW+ D T++ C N + +++ + H +H V+ W PDS R+V
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 326 CGSSDTEKGIFMCDCDGNEIKAWRGTRI 353
CG T++ ++ G + W+ T +
Sbjct: 70 CG---TDRNAYVWTLKG---RTWKPTLV 91
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 7/117 (5%)
Query: 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVAG-KWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453
PI+ + + D + N+ E+H+++ +G KW + + H+ + D
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ---VTGVDWAPDSNR 66
Query: 454 IASGSENSQIYIWN--RRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRI 508
I + + Y+W R KP ++ + CV W P K A S I I
Sbjct: 67 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISI 122
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 274 AWSPDDTKLLTCGNAEVLKLWDVETGICKH--TFGDHGFIVSSCAWFPDSKRLVCGSSDT 331
A++ T+ +T ++L++ + KH TF DH IV+ W P S R+V S D
Sbjct: 18 AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR 77
Query: 332 EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVT 362
++ DG W+ T + L+ A T
Sbjct: 78 NAYVYEKRPDGT----WKQTLVLLRLNRAAT 104
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 73/196 (37%), Gaps = 14/196 (7%)
Query: 178 ETAVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYL 237
E A SQ ++ + LYE G + ++H V V ++ +
Sbjct: 16 EHAFNSQRTEFVTTTATNQVELYEQDGNGWKH-----ARTFSDHDKIVTCVDWAPKSNRI 70
Query: 238 ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE 297
+ S D +A +++ D L +FV WSP++ K A V+ + E
Sbjct: 71 VTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFE 130
Query: 298 TG----ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGI---FMCDCDGN-EIKAWR 349
+ KH + S W P++ L G +D + + ++ D D E W
Sbjct: 131 QENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVW- 189
Query: 350 GTRIPKVLDLAVTPDG 365
G+R+P A P G
Sbjct: 190 GSRLPFNTVCAEYPSG 205
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGF-IVSSCA-WF 318
H L+ H V+ + W+PD +++TCG +W ++ K T + C W
Sbjct: 46 HELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 105
Query: 319 PDSKRLVCGS 328
P+ K+ GS
Sbjct: 106 PNEKKFAVGS 115
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
V L EH +V + ++ + + + +D +A +W + + LR ++ V
Sbjct: 45 VHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR-AARCVR 103
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETG----ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD 330
W+P++ K + V+ + E +CKH V S W P+S L GS D
Sbjct: 104 WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163
Query: 331 TEKGIF 336
+ IF
Sbjct: 164 FKCRIF 169
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETG--ICKHTFGDHGFIVSSCAWFPDSKRLV- 325
P+S AW+ D T++ C N + +++ + H +H V+ W PDS R+V
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVT 69
Query: 326 CGSSDTEKGIFMCDCDGNEIKAWRGTRI 353
CG T++ ++ G + W+ T +
Sbjct: 70 CG---TDRNAYVWTLKG---RTWKPTLV 91
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 451 GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
GT SGS++ I +W+ + H+ V CV+ +P + + S S+D+ I +W
Sbjct: 139 GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 278 DDTKLLTCGNAEVLKLWDV-----ETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332
+ T+ + G +K+WD+ ++ + + + + SC PD L+ G +
Sbjct: 61 NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120
Query: 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL 382
I+ IKA + P LA++PD + S SD +I + +L
Sbjct: 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL 170
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 211 PTETVQI-LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNP 269
PT ++ LT + + S + + S SD + +W + TL + H +
Sbjct: 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---TLVRQFQGHTDG 185
Query: 270 VSFVAWSPDDTKLLTCGNAEVLKLWDVETG--ICKHTFGDHGFIVSSC 315
S + S D TKL T G ++ WD+ G + +H F F + C
Sbjct: 186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYC 233
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 455 ASGSEN-SQIYIWNRRNSK-PIEILS-GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511
A+GS+N I IW+ RN+ P++ L+ GH + + W + +L S+ D+T+ +W P
Sbjct: 233 ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 431 KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIW--NRRNSKP---IEILSGHSMT-- 483
+++ HS + ++ F +ASG N +I+IW N+ P + G SM+
Sbjct: 108 RFSNHSSSVKTVK--FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV 165
Query: 484 --VNCVSWNPKRPKMLASASDDHTIRIW 509
V ++WN + ASA + IW
Sbjct: 166 DEVISLAWNQSLAHVFASAGSSNFASIW 193
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Query: 413 NSQEIHMWDVAGKWEKPFKYT----GHSQNKY--VIRSCFG-GLDGTFIASGSENSQIYI 465
N+ EI +WD+ E P YT G S + VI + L F ++GS N I
Sbjct: 134 NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNF-ASI 192
Query: 466 WNRRNSKPIEIL------SGHSMTVNCVSWNPKRPKMLASAS---DDHTIRIW 509
W+ + K + L SG ++ V W+PK +A+A+ +D +I IW
Sbjct: 193 WDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW 245
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 218 LTEHKNEVW---FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA 274
L H VW V FS N ++S+D + +W+ + +K H + V +A
Sbjct: 138 LQAHNASVWDAKVVSFSEN--KFLTASADKTIKLWQ----NDKVIKTFSGIHNDVVRHLA 191
Query: 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT 331
DD ++C N ++KL D TG T+ H V P+ + CG T
Sbjct: 192 -VVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRT 247
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFV--A 274
++ H N V V+ + G+ +A+ S D + I +V + L R + S +
Sbjct: 174 LVKAHANPVKMVRLNRKGDMVATCSQDGTLI--RVFQTDNGVLVREFRRGLDRTSIIDMR 231
Query: 275 WSPDDTKLLTCGNAEVLKLWDV 296
WSPD +KL + L +++V
Sbjct: 232 WSPDGSKLAVVSDKWTLHVFEV 253
>pdb|1YTQ|A Chain A, Structure Of Native Human Beta B2 Crystallin
Length = 204
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 15 KKYEFVRVVVQCLYSLGYQKSASCLESESG--VSYKSKGFERLEVQILNGDWDGCIDTLI 72
KK E + V ++ GYQ+ S + +SG V Y+ G+ L+ + GD+ D
Sbjct: 119 KKMEIIDDDVPSFHAHGYQEKVSSVRVQSGTWVGYQYPGYRGLQYLLEKGDYKDSSDFGA 178
Query: 73 AITDLNDERR 82
+ RR
Sbjct: 179 PHPQVQSVRR 188
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 462 QIYIWNRRN--SKPIEILS--GHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509
Q+ IW+ R ++P +ILS G + ++CV +P + ++A+ D + IW
Sbjct: 213 QLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIW 264
>pdb|1BLB|A Chain A, Close Packing Of An Oligomeric Eye Lens Beta-Crystallin
Induces Loss Of Symmetry And Ordering Of Sequence
Extensions
pdb|1BLB|B Chain B, Close Packing Of An Oligomeric Eye Lens Beta-Crystallin
Induces Loss Of Symmetry And Ordering Of Sequence
Extensions
pdb|1BLB|C Chain C, Close Packing Of An Oligomeric Eye Lens Beta-Crystallin
Induces Loss Of Symmetry And Ordering Of Sequence
Extensions
pdb|1BLB|D Chain D, Close Packing Of An Oligomeric Eye Lens Beta-Crystallin
Induces Loss Of Symmetry And Ordering Of Sequence
Extensions
Length = 204
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 15 KKYEFVRVVVQCLYSLGYQKSASCLESESG--VSYKSKGFERLEVQILNGDWDGCIDTLI 72
KK E + V ++ GYQ+ S + +SG V Y+ G+ L+ + GD+ D
Sbjct: 119 KKMEVIDDDVPSFHAHGYQEKVSSVRVQSGTWVGYQYPGYRGLQYLLEKGDYKDSGDFGA 178
Query: 73 AITDLNDERR 82
+ RR
Sbjct: 179 PQPQVQSVRR 188
>pdb|1BD7|A Chain A, Circularly Permuted Bb2-Crystallin
pdb|1BD7|B Chain B, Circularly Permuted Bb2-Crystallin
Length = 176
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 15 KKYEFVRVVVQCLYSLGYQKSASCLESESG--VSYKSKGFERLEVQILNGDWDGCIDTLI 72
KK E V V ++ GYQ+ S + +SG V Y+ G+ L+ + GD+ D
Sbjct: 15 KKMEIVDDDVPSFHAHGYQEKVSSVRVQSGTWVGYQYPGYRGLQYLLEKGDYKDNSDFGA 74
Query: 73 AITDLNDERR 82
+ RR
Sbjct: 75 PHPQVQSVRR 84
>pdb|4I4A|A Chain A, Crystal Structure Of Plu4264 Protein From Photorhabdus
Luminescens
pdb|4I4A|B Chain B, Crystal Structure Of Plu4264 Protein From Photorhabdus
Luminescens
Length = 128
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/108 (19%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 325 VCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDL-AVTPDGENLISVLSDKDIRILNLG 383
+ D + + D DG+ + W G P V P+ ++ ++ ++ I+ G
Sbjct: 4 IIRKXDWDSXVHEYDLDGSRLLPWEGLNTPFGGAWCIVRPETKSFRHSHNEYELFIVIQG 63
Query: 384 TYAERVISEEHPITS---LSVSVDCKNFIVNLNSQEIHMWDVAGKWEK 428
R+ E+ P+T + + +D ++ ++N N ++ H + + W+K
Sbjct: 64 NAIIRINDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTIW--WDK 109
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 394 HPITSLSVSVD-------CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN 438
HP+ +L S D KN I++ Q + W+ AGKW F S+N
Sbjct: 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRN 56
>pdb|2BB2|A Chain A, X-Ray Analysis Of Beta B2-Crystallin And Evolution Of
Oligomeric Lens Proteins
Length = 181
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 15 KKYEFVRVVVQCLYSLGYQKSASCLESESG--VSYKSKGFERLEVQILNGDWDGCIDTLI 72
KK E + V ++ GYQ+ S + +SG V Y+ G+ L+ + GD+ D
Sbjct: 106 KKMEVIDDDVPSFHAHGYQEKVSSVRVQSGTWVGYQYPGYRGLQYLLEKGDYKDSGDFGA 165
Query: 73 AITDLNDERR 82
+ RR
Sbjct: 166 PQPQVQSVRR 175
>pdb|2QQW|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D23a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 428 KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCV 487
+P++ H Q ++ +G I G + Y WN + + I+ HS + + +
Sbjct: 2 QPYRTGFHFQPP---KNWMNAPNGPMIYKGIYH-LFYQWNPKGAVWGNIVWAHSTSTDLI 57
Query: 488 SWNPKRPKMLASASDD 503
+W+P P + SA D
Sbjct: 58 NWDPHPPAIFPSAPFD 73
>pdb|2XQR|A Chain A, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|C Chain C, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|E Chain E, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|G Chain G, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|I Chain I, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|K Chain K, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
Length = 537
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 463 IYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDD 503
Y WN + + I+ HS + + ++W+P P + SA D
Sbjct: 33 FYQWNPKGAVWGNIVWAHSTSTDLINWDPHPPAIFPSAPFD 73
>pdb|2QQU|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D239a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 535
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 463 IYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDD 503
Y WN + + I+ HS + + ++W+P P + SA D
Sbjct: 33 FYQWNPKGAVWGNIVWAHSTSTDLINWDPHPPAIFPSAPFD 73
>pdb|2OXB|A Chain A, Crystal Structure Of A Cell-Wall Invertase (E203q) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 463 IYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDD 503
Y WN + + I+ HS + + ++W+P P + SA D
Sbjct: 33 FYQWNPKGAVWGNIVWAHSTSTDLINWDPHPPAIFPSAPFD 73
>pdb|2QQV|A Chain A, Crystal Structure Of A Cell-Wall Invertase (E203a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 463 IYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDD 503
Y WN + + I+ HS + + ++W+P P + SA D
Sbjct: 33 FYQWNPKGAVWGNIVWAHSTSTDLINWDPHPPAIFPSAPFD 73
>pdb|2AC1|A Chain A, Crystal Structure Of A Cell-Wall Invertase From
Arabidopsis Thaliana
Length = 541
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 463 IYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDD 503
Y WN + + I+ HS + + ++W+P P + SA D
Sbjct: 37 FYQWNPKGAVWGNIVWAHSTSTDLINWDPHPPAIFPSAPFD 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,649,558
Number of Sequences: 62578
Number of extensions: 585654
Number of successful extensions: 2592
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1528
Number of HSP's gapped (non-prelim): 507
length of query: 517
length of database: 14,973,337
effective HSP length: 103
effective length of query: 414
effective length of database: 8,527,803
effective search space: 3530510442
effective search space used: 3530510442
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)