Query 042434
Match_columns 517
No_of_seqs 1083 out of 2893
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 06:08:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 1.7E-86 3.6E-91 575.9 38.1 511 1-514 1-515 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 4.1E-69 9E-74 454.1 28.3 482 14-511 5-508 (508)
3 KOG0271 Notchless-like WD40 re 100.0 3E-51 6.4E-56 353.2 27.4 300 206-515 99-442 (480)
4 KOG0271 Notchless-like WD40 re 100.0 1.1E-47 2.3E-52 331.2 26.1 318 182-510 115-479 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 4.8E-47 1E-51 331.4 23.7 284 218-511 171-459 (459)
6 KOG0273 Beta-transducin family 100.0 1.5E-44 3.3E-49 319.9 31.8 298 209-516 166-486 (524)
7 KOG0286 G-protein beta subunit 100.0 2E-43 4.3E-48 294.7 32.7 290 212-510 45-343 (343)
8 KOG0279 G protein beta subunit 100.0 5.3E-41 1.1E-45 278.5 32.1 292 213-513 6-314 (315)
9 KOG0282 mRNA splicing factor [ 100.0 3E-43 6.6E-48 312.9 20.0 297 208-510 200-503 (503)
10 KOG0315 G-protein beta subunit 100.0 3.1E-39 6.8E-44 263.5 28.9 272 235-517 11-293 (311)
11 KOG0295 WD40 repeat-containing 100.0 1.3E-40 2.7E-45 286.0 21.8 288 213-511 99-405 (406)
12 KOG0645 WD40 repeat protein [G 100.0 2.7E-38 5.9E-43 261.3 33.0 288 213-512 5-311 (312)
13 KOG0265 U5 snRNP-specific prot 100.0 3.6E-39 7.7E-44 270.3 28.0 291 213-510 38-336 (338)
14 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-40 2.4E-45 291.7 19.5 275 184-467 177-458 (459)
15 KOG0316 Conserved WD40 repeat- 100.0 8.8E-39 1.9E-43 258.8 28.2 291 209-510 4-297 (307)
16 KOG0263 Transcription initiati 100.0 1.5E-38 3.3E-43 299.8 34.1 286 208-500 364-703 (707)
17 KOG0318 WD40 repeat stress pro 100.0 1.7E-37 3.8E-42 278.8 34.5 323 183-512 148-602 (603)
18 KOG0315 G-protein beta subunit 100.0 1.3E-37 2.9E-42 254.0 29.0 287 196-490 14-309 (311)
19 KOG0296 Angio-associated migra 100.0 1.7E-37 3.7E-42 267.0 30.8 288 212-512 54-398 (399)
20 KOG0266 WD40 repeat-containing 100.0 4.4E-37 9.5E-42 298.5 34.8 293 215-512 151-454 (456)
21 KOG0284 Polyadenylation factor 100.0 1.1E-38 2.4E-43 277.9 19.1 283 219-513 93-381 (464)
22 KOG0291 WD40-repeat-containing 100.0 1.7E-36 3.8E-41 283.4 34.4 322 183-514 266-614 (893)
23 cd00200 WD40 WD40 domain, foun 100.0 7.7E-36 1.7E-40 276.6 37.4 285 215-510 2-289 (289)
24 KOG0318 WD40 repeat stress pro 100.0 1E-35 2.2E-40 267.5 34.9 298 212-515 49-563 (603)
25 KOG0285 Pleiotropic regulator 100.0 7.9E-37 1.7E-41 262.0 26.1 294 207-512 136-439 (460)
26 KOG0279 G protein beta subunit 100.0 5.6E-36 1.2E-40 248.7 28.5 252 210-469 51-313 (315)
27 KOG0273 Beta-transducin family 100.0 8.2E-36 1.8E-40 264.7 30.0 278 222-512 235-523 (524)
28 KOG0291 WD40-repeat-containing 100.0 3.6E-35 7.8E-40 274.7 33.7 324 184-514 98-510 (893)
29 KOG0278 Serine/threonine kinas 100.0 8.4E-37 1.8E-41 249.5 18.9 289 215-515 7-300 (334)
30 KOG0286 G-protein beta subunit 100.0 2.2E-35 4.7E-40 246.7 27.6 280 181-467 54-343 (343)
31 KOG0319 WD40-repeat-containing 100.0 1.6E-35 3.4E-40 276.7 25.2 342 168-516 91-581 (775)
32 PLN00181 protein SPA1-RELATED; 100.0 6.5E-34 1.4E-38 297.3 39.5 284 218-511 479-792 (793)
33 KOG0643 Translation initiation 100.0 1E-34 2.3E-39 239.6 24.1 285 217-512 5-317 (327)
34 KOG0640 mRNA cleavage stimulat 100.0 6.7E-34 1.5E-38 239.6 29.1 347 161-512 39-426 (430)
35 KOG0263 Transcription initiati 100.0 5.8E-35 1.3E-39 275.7 24.7 248 260-514 371-651 (707)
36 KOG0276 Vesicle coat complex C 100.0 6.8E-34 1.5E-38 260.7 26.7 285 215-508 6-295 (794)
37 KOG1407 WD40 repeat protein [F 100.0 3.4E-33 7.3E-38 230.0 27.3 287 216-513 14-312 (313)
38 KOG0295 WD40 repeat-containing 100.0 2.1E-34 4.6E-39 247.8 19.9 378 15-468 9-405 (406)
39 KOG0289 mRNA splicing factor [ 100.0 9.2E-33 2E-37 242.9 30.3 281 222-511 219-505 (506)
40 KOG0288 WD40 repeat protein Ti 100.0 7E-35 1.5E-39 254.7 16.5 299 203-510 156-459 (459)
41 KOG0283 WD40 repeat-containing 100.0 1.5E-33 3.2E-38 268.5 25.4 249 214-469 258-576 (712)
42 KOG0284 Polyadenylation factor 100.0 1.2E-34 2.6E-39 252.7 14.7 244 267-516 96-341 (464)
43 KOG0285 Pleiotropic regulator 100.0 2.4E-33 5.2E-38 240.7 21.8 250 257-515 141-392 (460)
44 KOG0306 WD40-repeat-containing 100.0 1E-32 2.2E-37 258.2 27.5 287 216-513 367-665 (888)
45 KOG0306 WD40-repeat-containing 100.0 2.8E-32 6.1E-37 255.3 30.2 320 185-514 67-624 (888)
46 KOG1446 Histone H3 (Lys4) meth 100.0 3E-31 6.4E-36 225.2 33.2 290 213-513 5-304 (311)
47 KOG0281 Beta-TrCP (transducin 100.0 3.6E-34 7.9E-39 244.8 15.5 271 221-515 196-480 (499)
48 KOG0319 WD40-repeat-containing 100.0 9.7E-33 2.1E-37 258.1 24.4 299 204-513 305-620 (775)
49 KOG0313 Microtubule binding pr 100.0 7.9E-32 1.7E-36 233.2 26.0 291 210-513 94-419 (423)
50 KOG0266 WD40 repeat-containing 100.0 1.3E-31 2.9E-36 260.2 30.2 281 182-469 159-454 (456)
51 KOG0772 Uncharacterized conser 100.0 1.6E-31 3.6E-36 239.9 25.7 302 207-512 152-488 (641)
52 KOG0292 Vesicle coat complex C 100.0 2.2E-31 4.7E-36 253.4 25.5 289 217-515 4-324 (1202)
53 KOG0292 Vesicle coat complex C 100.0 1E-30 2.2E-35 249.0 28.2 315 187-511 14-396 (1202)
54 KOG0645 WD40 repeat protein [G 100.0 2.4E-30 5.2E-35 214.4 26.8 249 213-469 51-311 (312)
55 KOG0276 Vesicle coat complex C 100.0 3.2E-31 7E-36 243.3 23.3 248 261-513 7-258 (794)
56 KOG0316 Conserved WD40 repeat- 100.0 5.3E-31 1.1E-35 213.8 21.3 246 259-515 9-260 (307)
57 KOG0296 Angio-associated migra 100.0 3E-30 6.5E-35 222.4 26.2 279 181-469 63-398 (399)
58 KOG0268 Sof1-like rRNA process 100.0 6.1E-32 1.3E-36 232.5 15.5 288 213-516 57-349 (433)
59 KOG0277 Peroxisomal targeting 100.0 2.4E-30 5.2E-35 212.4 23.0 279 226-511 12-308 (311)
60 KOG0647 mRNA export protein (c 100.0 1.2E-29 2.7E-34 213.4 27.6 279 217-503 22-315 (347)
61 KOG0274 Cdc4 and related F-box 100.0 2.5E-29 5.4E-34 243.1 31.6 282 216-516 201-486 (537)
62 cd00200 WD40 WD40 domain, foun 100.0 2.9E-29 6.3E-34 232.4 30.9 247 261-515 3-252 (289)
63 KOG0973 Histone transcription 100.0 6.5E-30 1.4E-34 250.0 26.9 287 220-513 11-356 (942)
64 KOG0265 U5 snRNP-specific prot 100.0 6.9E-30 1.5E-34 214.7 23.1 250 258-514 38-298 (338)
65 KOG0641 WD40 repeat protein [G 100.0 1.3E-27 2.8E-32 193.0 34.7 292 212-512 23-349 (350)
66 PLN00181 protein SPA1-RELATED; 100.0 1.6E-28 3.5E-33 256.8 35.9 264 243-514 457-740 (793)
67 KOG0299 U3 snoRNP-associated p 100.0 3.7E-29 8E-34 222.1 26.0 292 215-511 135-455 (479)
68 KOG1446 Histone H3 (Lys4) meth 100.0 2.4E-28 5.1E-33 207.6 29.7 257 258-517 5-267 (311)
69 KOG0281 Beta-TrCP (transducin 100.0 5.7E-31 1.2E-35 225.3 13.7 230 267-515 197-431 (499)
70 KOG0305 Anaphase promoting com 100.0 6.8E-29 1.5E-33 230.9 28.5 271 227-513 182-462 (484)
71 KOG0282 mRNA splicing factor [ 100.0 1.2E-30 2.6E-35 232.9 15.8 251 258-516 205-466 (503)
72 KOG0294 WD40 repeat-containing 100.0 1.6E-28 3.4E-33 208.0 27.2 267 237-515 4-284 (362)
73 PTZ00421 coronin; Provisional 100.0 5.4E-28 1.2E-32 233.8 33.6 269 221-493 19-315 (493)
74 KOG0310 Conserved WD40 repeat- 100.0 9.9E-29 2.2E-33 221.0 24.9 280 221-512 25-309 (487)
75 KOG0313 Microtubule binding pr 100.0 6.5E-29 1.4E-33 215.2 22.7 243 264-515 102-379 (423)
76 KOG1273 WD40 repeat protein [G 100.0 2.3E-28 5E-33 206.8 24.5 294 209-513 12-323 (405)
77 KOG0300 WD40 repeat-containing 100.0 3E-28 6.6E-33 206.3 25.1 293 212-515 138-479 (481)
78 KOG0643 Translation initiation 100.0 3.3E-28 7.2E-33 201.3 23.9 286 176-470 4-318 (327)
79 KOG0293 WD40 repeat-containing 100.0 6.3E-29 1.4E-33 217.5 20.6 251 260-517 217-475 (519)
80 KOG1539 WD repeat protein [Gen 100.0 1.5E-27 3.3E-32 226.3 29.1 312 196-516 176-610 (910)
81 PTZ00420 coronin; Provisional 100.0 9.7E-27 2.1E-31 225.8 35.1 245 240-493 50-318 (568)
82 KOG0283 WD40 repeat-containing 100.0 4.9E-28 1.1E-32 231.1 25.0 245 260-513 259-577 (712)
83 KOG0294 WD40 repeat-containing 100.0 2.9E-27 6.4E-32 200.3 26.5 264 212-489 33-305 (362)
84 KOG0277 Peroxisomal targeting 100.0 2.2E-28 4.8E-33 200.9 18.6 242 221-468 59-308 (311)
85 PTZ00421 coronin; Provisional 100.0 1.7E-26 3.7E-31 223.3 33.9 208 216-425 69-292 (493)
86 KOG0308 Conserved WD40 repeat- 100.0 2.3E-28 5E-33 225.7 19.4 286 221-513 20-328 (735)
87 KOG1332 Vesicle coat complex C 100.0 4.6E-28 9.9E-33 197.9 18.8 250 217-469 6-286 (299)
88 KOG1408 WD40 repeat protein [F 100.0 3.7E-28 8E-33 226.5 20.5 324 185-513 327-714 (1080)
89 KOG0301 Phospholipase A2-activ 100.0 4E-27 8.7E-32 219.2 26.8 284 213-514 5-290 (745)
90 KOG1407 WD40 repeat protein [F 100.0 2.5E-27 5.5E-32 195.5 21.7 247 261-516 14-265 (313)
91 KOG1036 Mitotic spindle checkp 100.0 4E-26 8.7E-31 193.1 28.2 270 221-502 12-294 (323)
92 KOG0278 Serine/threonine kinas 100.0 3.9E-28 8.5E-33 198.9 15.3 258 205-474 42-302 (334)
93 KOG2096 WD40 repeat protein [G 100.0 1.8E-26 4E-31 195.6 25.9 288 215-510 79-400 (420)
94 KOG0305 Anaphase promoting com 100.0 9.4E-27 2E-31 216.7 25.6 257 204-471 199-463 (484)
95 KOG0274 Cdc4 and related F-box 100.0 2.4E-26 5.2E-31 222.5 29.4 267 196-481 221-494 (537)
96 KOG0264 Nucleosome remodeling 100.0 7.6E-27 1.7E-31 207.5 22.3 260 219-512 121-404 (422)
97 KOG0973 Histone transcription 100.0 1.3E-26 2.8E-31 227.0 25.6 255 212-471 59-357 (942)
98 KOG0650 WD40 repeat nucleolar 100.0 6.1E-26 1.3E-30 207.9 27.2 294 207-510 385-733 (733)
99 KOG0275 Conserved WD40 repeat- 100.0 2E-27 4.2E-32 202.0 15.0 275 184-467 215-507 (508)
100 KOG0321 WD40 repeat-containing 100.0 2.2E-26 4.8E-31 212.3 22.9 284 228-514 55-393 (720)
101 PTZ00420 coronin; Provisional 100.0 4.6E-25 1E-29 214.2 32.9 225 285-514 50-295 (568)
102 KOG0289 mRNA splicing factor [ 99.9 7.2E-26 1.6E-30 199.7 24.2 257 204-468 243-505 (506)
103 KOG0639 Transducin-like enhanc 99.9 2.2E-26 4.7E-31 206.5 20.8 282 220-511 417-703 (705)
104 KOG2055 WD40 repeat protein [G 99.9 1.5E-25 3.2E-30 199.3 25.6 286 221-512 212-512 (514)
105 KOG0288 WD40 repeat protein Ti 99.9 4.7E-27 1E-31 205.9 15.7 260 196-466 191-458 (459)
106 KOG0640 mRNA cleavage stimulat 99.9 2.5E-26 5.4E-31 194.1 18.9 250 261-516 106-387 (430)
107 KOG0310 Conserved WD40 repeat- 99.9 3.9E-26 8.4E-31 204.6 20.7 252 207-469 53-309 (487)
108 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.2E-24 7E-29 200.5 34.6 271 234-516 1-283 (300)
109 KOG1539 WD repeat protein [Gen 99.9 5.2E-25 1.1E-29 209.3 28.4 319 183-511 203-647 (910)
110 KOG1274 WD40 repeat protein [G 99.9 7.3E-25 1.6E-29 210.6 29.2 274 219-505 10-293 (933)
111 KOG4283 Transcription-coupled 99.9 5.3E-25 1.2E-29 184.9 24.1 288 218-513 39-366 (397)
112 KOG0641 WD40 repeat protein [G 99.9 3.4E-24 7.4E-29 173.3 27.1 252 212-469 79-349 (350)
113 KOG0300 WD40 repeat-containing 99.9 2.1E-25 4.6E-30 189.1 21.1 267 201-471 169-478 (481)
114 KOG4328 WD40 protein [Function 99.9 7E-25 1.5E-29 194.9 25.0 300 212-514 176-497 (498)
115 KOG0647 mRNA export protein (c 99.9 3.4E-25 7.4E-30 186.7 21.5 243 265-515 25-284 (347)
116 KOG0772 Uncharacterized conser 99.9 2.5E-25 5.4E-30 200.4 20.0 251 260-514 160-447 (641)
117 KOG0268 Sof1-like rRNA process 99.9 4E-26 8.6E-31 196.9 14.1 243 259-515 58-305 (433)
118 KOG0299 U3 snoRNP-associated p 99.9 1.1E-24 2.4E-29 193.8 22.8 245 261-514 136-412 (479)
119 KOG2445 Nuclear pore complex c 99.9 6.4E-24 1.4E-28 179.6 25.4 265 218-512 9-318 (361)
120 KOG1036 Mitotic spindle checkp 99.9 4.1E-24 8.8E-29 181.0 23.8 241 266-516 12-266 (323)
121 KOG0308 Conserved WD40 repeat- 99.9 1.9E-25 4E-30 206.7 16.9 231 277-514 35-287 (735)
122 KOG0646 WD40 repeat protein [G 99.9 1E-24 2.2E-29 194.5 20.7 271 235-510 51-348 (476)
123 KOG2106 Uncharacterized conser 99.9 1.1E-23 2.4E-28 189.4 27.1 327 175-511 239-625 (626)
124 KOG2048 WD40 repeat protein [G 99.9 3.7E-23 8E-28 192.6 31.3 282 218-512 21-319 (691)
125 KOG2106 Uncharacterized conser 99.9 6.1E-23 1.3E-27 184.7 31.6 303 198-513 175-522 (626)
126 KOG1063 RNA polymerase II elon 99.9 7.1E-24 1.5E-28 197.7 25.9 296 212-513 181-603 (764)
127 KOG0269 WD40 repeat-containing 99.9 3E-24 6.5E-29 202.6 20.4 283 223-511 40-339 (839)
128 KOG0269 WD40 repeat-containing 99.9 9E-25 2E-29 206.1 15.8 244 225-472 90-343 (839)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.9E-22 1.1E-26 185.7 34.3 271 206-491 15-300 (300)
130 KOG0646 WD40 repeat protein [G 99.9 1.4E-23 3.1E-28 187.2 21.8 265 239-515 12-310 (476)
131 KOG1332 Vesicle coat complex C 99.9 7.8E-24 1.7E-28 173.3 18.0 246 263-514 7-288 (299)
132 KOG1408 WD40 repeat protein [F 99.9 4E-23 8.6E-28 193.2 25.1 288 226-517 328-676 (1080)
133 KOG1063 RNA polymerase II elon 99.9 8.8E-23 1.9E-27 190.4 26.1 335 178-512 263-699 (764)
134 KOG1274 WD40 repeat protein [G 99.9 8.5E-23 1.8E-27 196.6 26.0 244 264-513 10-263 (933)
135 KOG1445 Tumor-specific antigen 99.9 1.8E-23 3.9E-28 193.0 20.5 138 374-515 602-753 (1012)
136 KOG2919 Guanine nucleotide-bin 99.9 1.1E-22 2.5E-27 173.1 23.4 274 226-503 53-361 (406)
137 KOG0270 WD40 repeat-containing 99.9 7.4E-23 1.6E-27 181.5 20.1 238 233-516 191-453 (463)
138 KOG4227 WD40 repeat protein [G 99.9 2E-22 4.2E-27 175.9 21.9 295 214-512 48-387 (609)
139 KOG1538 Uncharacterized conser 99.9 1.4E-22 3.1E-27 188.2 22.2 272 224-513 14-294 (1081)
140 KOG0301 Phospholipase A2-activ 99.9 1.3E-22 2.9E-27 189.4 22.0 261 190-469 22-288 (745)
141 KOG2055 WD40 repeat protein [G 99.9 1.1E-22 2.4E-27 181.2 20.0 314 151-469 175-512 (514)
142 KOG4378 Nuclear protein COP1 [ 99.9 1.4E-22 3.1E-27 181.9 19.7 261 224-493 36-305 (673)
143 KOG0322 G-protein beta subunit 99.9 9.3E-23 2E-27 168.9 17.0 289 210-511 2-322 (323)
144 KOG1009 Chromatin assembly com 99.9 1.1E-21 2.3E-26 172.3 24.0 288 221-512 12-372 (434)
145 KOG0639 Transducin-like enhanc 99.9 6.4E-23 1.4E-27 184.4 16.6 238 221-468 464-703 (705)
146 KOG0267 Microtubule severing p 99.9 8E-24 1.7E-28 198.2 10.6 236 216-461 22-260 (825)
147 KOG0267 Microtubule severing p 99.9 1.4E-23 3.1E-28 196.6 11.1 253 234-503 4-259 (825)
148 KOG0307 Vesicle coat complex C 99.9 5.2E-23 1.1E-27 202.9 15.2 284 227-515 11-330 (1049)
149 KOG0264 Nucleosome remodeling 99.9 6E-22 1.3E-26 176.5 19.4 209 213-424 168-405 (422)
150 KOG2048 WD40 repeat protein [G 99.9 1.1E-20 2.5E-25 176.2 27.9 245 266-515 24-278 (691)
151 KOG1334 WD40 repeat protein [G 99.9 4.5E-22 9.7E-27 178.5 16.1 298 213-515 133-469 (559)
152 KOG2096 WD40 repeat protein [G 99.9 1.4E-20 3E-25 160.2 23.1 249 261-516 80-364 (420)
153 KOG0302 Ribosome Assembly prot 99.9 1.1E-20 2.5E-25 164.2 22.7 265 215-510 144-436 (440)
154 KOG0650 WD40 repeat nucleolar 99.9 5E-21 1.1E-25 175.9 20.4 243 259-510 392-678 (733)
155 KOG1034 Transcriptional repres 99.9 2.2E-20 4.7E-25 159.7 22.6 289 217-512 33-383 (385)
156 KOG1188 WD40 repeat protein [G 99.9 1.1E-20 2.5E-25 162.4 20.3 273 235-513 41-347 (376)
157 KOG0321 WD40 repeat-containing 99.9 1.5E-20 3.3E-25 174.1 22.7 252 215-471 93-393 (720)
158 KOG4328 WD40 protein [Function 99.9 9.2E-21 2E-25 168.9 20.4 252 260-515 179-453 (498)
159 KOG1538 Uncharacterized conser 99.9 5.2E-21 1.1E-25 177.9 18.8 269 186-469 16-293 (1081)
160 KOG1310 WD40 repeat protein [G 99.9 1.9E-20 4.2E-25 170.4 21.4 207 214-424 42-304 (758)
161 KOG0644 Uncharacterized conser 99.9 1.8E-21 3.9E-26 185.3 15.1 288 213-515 181-471 (1113)
162 KOG1273 WD40 repeat protein [G 99.9 2E-20 4.3E-25 159.0 19.7 240 270-516 26-284 (405)
163 KOG1963 WD40 repeat protein [G 99.9 2.8E-19 6.2E-24 172.2 28.9 289 220-514 203-540 (792)
164 KOG0642 Cell-cycle nuclear pro 99.9 4.2E-21 9.2E-26 175.5 14.7 261 216-515 288-564 (577)
165 PRK11028 6-phosphogluconolacto 99.9 2.7E-18 5.8E-23 162.0 31.8 272 238-512 6-304 (330)
166 KOG1034 Transcriptional repres 99.9 1.5E-20 3.3E-25 160.7 14.4 243 220-469 87-383 (385)
167 COG2319 FOG: WD40 repeat [Gene 99.8 1.8E-17 3.9E-22 163.1 38.3 291 216-515 59-362 (466)
168 KOG4378 Nuclear protein COP1 [ 99.8 1.3E-19 2.7E-24 163.2 20.3 265 243-515 11-283 (673)
169 KOG0302 Ribosome Assembly prot 99.8 6.1E-20 1.3E-24 159.8 17.4 201 307-513 149-379 (440)
170 KOG1007 WD repeat protein TSSC 99.8 6.4E-19 1.4E-23 148.2 22.3 266 242-513 38-362 (370)
171 KOG0303 Actin-binding protein 99.8 3E-19 6.5E-24 156.4 20.7 206 217-425 76-296 (472)
172 KOG1523 Actin-related protein 99.8 3.5E-18 7.6E-23 146.0 24.8 210 217-426 5-239 (361)
173 KOG4283 Transcription-coupled 99.8 1.5E-18 3.3E-23 146.3 21.8 240 218-468 97-364 (397)
174 KOG1517 Guanine nucleotide bin 99.8 1.4E-18 2.9E-23 170.0 24.5 289 222-515 1064-1384(1387)
175 COG2319 FOG: WD40 repeat [Gene 99.8 1.2E-16 2.6E-21 157.2 39.1 288 212-513 145-443 (466)
176 KOG1009 Chromatin assembly com 99.8 1.3E-18 2.9E-23 153.0 21.2 258 213-473 56-376 (434)
177 KOG1240 Protein kinase contain 99.8 8E-18 1.7E-22 167.2 27.5 299 208-510 1034-1431(1431)
178 PRK01742 tolB translocation pr 99.8 3.2E-18 7E-23 166.3 24.3 236 243-493 183-427 (429)
179 KOG0307 Vesicle coat complex C 99.8 8.6E-20 1.9E-24 180.5 13.3 246 222-472 64-330 (1049)
180 KOG2919 Guanine nucleotide-bin 99.8 6E-18 1.3E-22 144.6 21.3 237 269-513 51-328 (406)
181 KOG0270 WD40 repeat-containing 99.8 2.6E-18 5.7E-23 152.9 19.8 238 272-515 130-407 (463)
182 KOG1963 WD40 repeat protein [G 99.8 6.9E-17 1.5E-21 155.9 28.9 322 190-515 24-490 (792)
183 KOG2445 Nuclear pore complex c 99.8 3E-17 6.5E-22 139.5 22.2 218 264-513 10-257 (361)
184 KOG0290 Conserved WD40 repeat- 99.8 1.7E-17 3.7E-22 139.8 20.5 242 268-513 45-319 (364)
185 PRK11028 6-phosphogluconolacto 99.8 3E-16 6.4E-21 148.1 30.4 250 214-469 27-304 (330)
186 KOG1587 Cytoplasmic dynein int 99.8 3.3E-17 7.2E-22 157.8 23.9 252 213-470 234-517 (555)
187 KOG1007 WD repeat protein TSSC 99.8 2.7E-17 5.9E-22 138.5 19.8 249 215-469 56-361 (370)
188 KOG1188 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 144.1 17.3 268 195-468 43-345 (376)
189 KOG0303 Actin-binding protein 99.8 4.3E-17 9.4E-22 143.0 21.1 228 261-493 75-321 (472)
190 KOG0649 WD40 repeat protein [G 99.8 7.6E-16 1.6E-20 126.7 26.6 272 223-510 11-314 (325)
191 KOG0290 Conserved WD40 repeat- 99.8 1.9E-16 4.2E-21 133.6 23.3 281 215-503 38-357 (364)
192 KOG1587 Cytoplasmic dynein int 99.8 2.3E-16 5E-21 152.0 27.2 262 243-513 221-517 (555)
193 KOG0771 Prolactin regulatory e 99.8 1.1E-17 2.4E-22 148.4 15.5 193 226-424 148-355 (398)
194 KOG4497 Uncharacterized conser 99.8 7.2E-17 1.6E-21 138.4 19.4 278 227-514 13-393 (447)
195 KOG4227 WD40 repeat protein [G 99.8 1.2E-16 2.6E-21 140.1 20.5 250 261-514 50-324 (609)
196 KOG0644 Uncharacterized conser 99.8 1.5E-18 3.3E-23 165.6 9.2 243 260-517 183-431 (1113)
197 PRK03629 tolB translocation pr 99.8 1.4E-15 3.1E-20 147.4 29.9 236 244-492 179-428 (429)
198 PRK01742 tolB translocation pr 99.8 2.1E-16 4.5E-21 153.7 23.8 219 209-437 190-416 (429)
199 PF02239 Cytochrom_D1: Cytochr 99.8 2E-15 4.4E-20 141.7 29.4 302 203-516 17-351 (369)
200 KOG1445 Tumor-specific antigen 99.7 2.4E-17 5.1E-22 153.0 14.5 203 221-425 626-846 (1012)
201 KOG1240 Protein kinase contain 99.7 1.1E-15 2.4E-20 152.3 26.4 257 258-515 1039-1337(1431)
202 KOG0642 Cell-cycle nuclear pro 99.7 5.5E-17 1.2E-21 148.9 15.7 237 187-425 299-563 (577)
203 KOG0649 WD40 repeat protein [G 99.7 1.7E-15 3.7E-20 124.7 21.7 233 269-512 12-274 (325)
204 KOG2139 WD40 repeat protein [G 99.7 4.1E-15 8.8E-20 129.4 24.9 266 196-468 114-430 (445)
205 KOG1524 WD40 repeat-containing 99.7 9.8E-17 2.1E-21 146.1 15.7 252 190-467 22-284 (737)
206 PRK02889 tolB translocation pr 99.7 6.2E-15 1.3E-19 143.2 27.9 236 244-492 176-425 (427)
207 KOG2321 WD40 repeat protein [G 99.7 5.3E-15 1.1E-19 136.2 25.1 280 220-513 49-344 (703)
208 KOG1524 WD40 repeat-containing 99.7 8.4E-16 1.8E-20 140.2 19.0 201 200-419 82-282 (737)
209 PRK05137 tolB translocation pr 99.7 1.3E-14 2.8E-19 141.7 28.7 235 244-492 182-433 (435)
210 PRK03629 tolB translocation pr 99.7 1E-14 2.3E-19 141.4 27.8 218 211-436 187-417 (429)
211 KOG0771 Prolactin regulatory e 99.7 4.1E-15 8.8E-20 132.3 22.4 197 313-513 148-355 (398)
212 PRK04922 tolB translocation pr 99.7 7.1E-15 1.5E-19 143.3 26.6 235 244-491 184-432 (433)
213 KOG2110 Uncharacterized conser 99.7 2.1E-14 4.6E-19 125.5 26.2 235 267-514 5-250 (391)
214 KOG1272 WD40-repeat-containing 99.7 7E-17 1.5E-21 144.7 10.5 230 268-511 130-361 (545)
215 PRK05137 tolB translocation pr 99.7 1.4E-14 3.1E-19 141.4 27.2 210 210-425 189-414 (435)
216 KOG2110 Uncharacterized conser 99.7 1.3E-14 2.8E-19 126.8 22.4 249 222-480 87-343 (391)
217 PRK04922 tolB translocation pr 99.7 1.6E-14 3.4E-19 140.9 25.9 210 210-425 191-413 (433)
218 KOG2394 WD40 protein DMR-N9 [G 99.7 5.4E-15 1.2E-19 135.1 20.1 271 224-514 125-454 (636)
219 KOG1523 Actin-related protein 99.7 3.4E-14 7.4E-19 121.9 23.0 232 266-503 9-269 (361)
220 PRK02889 tolB translocation pr 99.7 3.3E-14 7.1E-19 138.1 26.1 209 210-424 183-404 (427)
221 KOG4497 Uncharacterized conser 99.7 3.4E-14 7.3E-19 122.2 21.8 307 187-505 13-425 (447)
222 KOG1409 Uncharacterized conser 99.7 2.4E-14 5.2E-19 123.9 20.3 249 211-469 13-270 (404)
223 KOG3881 Uncharacterized conser 99.7 1.6E-14 3.4E-19 127.2 18.9 240 266-515 54-323 (412)
224 KOG1517 Guanine nucleotide bin 99.6 4.7E-14 1E-18 138.9 23.8 271 201-472 1085-1384(1387)
225 KOG2139 WD40 repeat protein [G 99.6 6.6E-14 1.4E-18 122.0 21.7 187 222-413 98-300 (445)
226 KOG1310 WD40 repeat protein [G 99.6 4.9E-15 1.1E-19 135.6 15.2 215 259-476 42-310 (758)
227 KOG1272 WD40-repeat-containing 99.6 2.7E-15 5.8E-20 134.6 13.2 276 222-514 129-411 (545)
228 KOG1832 HIV-1 Vpr-binding prot 99.6 1.4E-16 3E-21 153.4 4.7 294 169-493 1011-1313(1516)
229 PF10282 Lactonase: Lactonase, 99.6 6.6E-12 1.4E-16 118.5 35.9 268 221-489 35-345 (345)
230 KOG2315 Predicted translation 99.6 4.3E-13 9.3E-18 123.7 25.7 273 222-513 34-391 (566)
231 KOG2314 Translation initiation 99.6 2.2E-13 4.9E-18 125.2 23.0 275 223-512 211-573 (698)
232 PRK04792 tolB translocation pr 99.6 7.8E-13 1.7E-17 128.9 28.3 235 245-492 199-447 (448)
233 TIGR02800 propeller_TolB tol-p 99.6 8E-13 1.7E-17 129.4 28.6 234 244-490 170-417 (417)
234 KOG2111 Uncharacterized conser 99.6 8.6E-13 1.9E-17 113.3 24.1 233 269-513 7-257 (346)
235 KOG1334 WD40 repeat protein [G 99.6 1.2E-14 2.6E-19 131.4 13.4 257 258-515 133-427 (559)
236 PF02239 Cytochrom_D1: Cytochr 99.6 9.2E-13 2E-17 123.9 26.9 268 238-515 10-305 (369)
237 PRK00178 tolB translocation pr 99.6 1.6E-12 3.5E-17 127.3 29.0 235 245-492 180-428 (430)
238 PF10282 Lactonase: Lactonase, 99.6 9.3E-12 2E-16 117.5 33.0 275 237-512 2-322 (345)
239 KOG0322 G-protein beta subunit 99.6 1.1E-13 2.3E-18 115.6 15.7 225 197-422 29-322 (323)
240 KOG2041 WD40 repeat protein [G 99.6 4.4E-13 9.6E-18 126.8 21.5 274 222-508 14-333 (1189)
241 KOG3881 Uncharacterized conser 99.6 7.2E-13 1.6E-17 116.9 21.2 264 221-492 54-342 (412)
242 PF08662 eIF2A: Eukaryotic tra 99.6 6.3E-13 1.4E-17 113.5 20.6 150 271-425 9-181 (194)
243 KOG1354 Serine/threonine prote 99.6 4.7E-13 1E-17 116.0 19.6 279 221-515 24-362 (433)
244 PF08662 eIF2A: Eukaryotic tra 99.6 5.2E-13 1.1E-17 114.0 19.5 157 313-477 9-186 (194)
245 TIGR02800 propeller_TolB tol-p 99.6 2.1E-12 4.6E-17 126.4 26.0 207 211-423 178-397 (417)
246 PRK00178 tolB translocation pr 99.6 4.1E-12 8.8E-17 124.5 27.7 208 211-424 187-407 (430)
247 KOG2111 Uncharacterized conser 99.6 2.2E-11 4.8E-16 104.8 28.2 270 224-508 7-318 (346)
248 PRK04792 tolB translocation pr 99.5 4.5E-12 9.8E-17 123.6 26.1 207 212-424 207-426 (448)
249 KOG2321 WD40 repeat protein [G 99.5 2.1E-12 4.6E-17 119.3 21.6 244 265-517 49-307 (703)
250 COG2706 3-carboxymuconate cycl 99.5 1.4E-10 3.1E-15 102.2 30.7 270 243-513 15-322 (346)
251 KOG2394 WD40 protein DMR-N9 [G 99.5 1E-12 2.2E-17 120.5 17.9 190 232-439 183-377 (636)
252 COG2706 3-carboxymuconate cycl 99.5 3.1E-10 6.8E-15 100.1 30.7 272 218-490 35-345 (346)
253 COG5354 Uncharacterized protei 99.5 2.1E-11 4.5E-16 111.4 23.9 287 209-514 18-397 (561)
254 PRK01029 tolB translocation pr 99.5 3.6E-11 7.8E-16 116.3 26.5 209 212-425 174-405 (428)
255 KOG0974 WD-repeat protein WDR6 99.5 2E-11 4.3E-16 120.9 24.5 150 228-384 139-289 (967)
256 PRK01029 tolB translocation pr 99.5 1.1E-10 2.4E-15 113.0 28.6 238 245-493 166-426 (428)
257 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.1E-09 4.5E-14 98.9 33.1 260 244-516 27-334 (352)
258 COG4946 Uncharacterized protei 99.4 6.8E-10 1.5E-14 100.8 28.1 174 230-412 327-507 (668)
259 COG5354 Uncharacterized protei 99.4 1.5E-10 3.3E-15 105.9 23.7 274 202-493 108-411 (561)
260 KOG4547 WD40 repeat-containing 99.4 2E-10 4.3E-15 107.2 24.3 190 231-424 2-221 (541)
261 KOG0974 WD-repeat protein WDR6 99.4 4.1E-11 8.9E-16 118.7 19.4 273 221-514 6-290 (967)
262 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.4E-09 5.2E-14 98.5 29.5 262 202-478 27-339 (352)
263 KOG4547 WD40 repeat-containing 99.4 4.2E-11 9E-16 111.7 17.4 207 277-513 3-221 (541)
264 KOG1064 RAVE (regulator of V-A 99.4 1.5E-11 3.3E-16 127.7 15.8 221 264-505 2205-2439(2439)
265 PF04762 IKI3: IKI3 family; I 99.3 3.5E-09 7.5E-14 110.9 32.6 285 220-513 73-457 (928)
266 PRK04043 tolB translocation pr 99.3 2.1E-09 4.5E-14 103.4 28.4 204 212-424 178-401 (419)
267 KOG1912 WD40 repeat protein [G 99.3 5.7E-10 1.2E-14 107.2 23.9 215 203-422 36-303 (1062)
268 KOG1409 Uncharacterized conser 99.3 1.6E-10 3.6E-15 100.5 18.0 201 221-424 67-271 (404)
269 KOG0280 Uncharacterized conser 99.3 1.2E-09 2.5E-14 93.4 22.5 267 243-516 45-337 (339)
270 KOG2041 WD40 repeat protein [G 99.3 4.2E-11 9.1E-16 113.7 14.9 235 267-503 14-279 (1189)
271 PLN02919 haloacid dehalogenase 99.3 4.1E-09 8.9E-14 112.5 30.9 242 271-515 571-891 (1057)
272 KOG2659 LisH motif-containing 99.3 3.4E-11 7.4E-16 100.3 10.7 165 13-177 23-197 (228)
273 PRK04043 tolB translocation pr 99.3 1.2E-08 2.6E-13 98.1 29.5 211 269-489 189-419 (419)
274 PF08450 SGL: SMP-30/Gluconola 99.3 3.7E-08 8E-13 88.7 30.3 222 272-501 4-245 (246)
275 PLN02919 haloacid dehalogenase 99.2 3E-08 6.6E-13 106.0 33.7 239 226-473 571-892 (1057)
276 TIGR03300 assembly_YfgL outer 99.2 2E-08 4.4E-13 96.7 29.9 257 233-509 104-376 (377)
277 KOG2315 Predicted translation 99.2 4.8E-09 1E-13 97.5 22.8 201 221-425 164-392 (566)
278 KOG1064 RAVE (regulator of V-A 99.2 1.1E-10 2.4E-15 121.5 13.4 194 217-425 2203-2400(2439)
279 KOG4190 Uncharacterized conser 99.2 1.2E-10 2.6E-15 107.5 12.0 284 214-508 727-1032(1034)
280 KOG2314 Translation initiation 99.2 3.8E-09 8.2E-14 97.9 21.3 293 177-479 205-574 (698)
281 TIGR03300 assembly_YfgL outer 99.2 2.8E-08 6.1E-13 95.7 28.9 260 233-516 64-342 (377)
282 KOG0309 Conserved WD40 repeat- 99.2 3.5E-10 7.6E-15 108.0 14.2 283 222-513 24-340 (1081)
283 PF04762 IKI3: IKI3 family; I 99.2 6E-08 1.3E-12 101.7 32.1 284 223-510 22-377 (928)
284 KOG1912 WD40 repeat protein [G 99.2 2.9E-09 6.2E-14 102.5 18.7 285 221-515 14-367 (1062)
285 COG4946 Uncharacterized protei 99.2 4.7E-08 1E-12 89.1 25.4 149 219-372 356-507 (668)
286 KOG4190 Uncharacterized conser 99.1 2.8E-10 6.1E-15 105.1 9.5 210 260-478 728-957 (1034)
287 KOG0280 Uncharacterized conser 99.1 2.6E-08 5.6E-13 85.3 20.0 202 222-425 69-286 (339)
288 COG5170 CDC55 Serine/threonine 99.1 2.8E-09 6.1E-14 91.7 14.2 274 221-513 25-368 (460)
289 PF15492 Nbas_N: Neuroblastoma 99.1 3.4E-07 7.3E-12 78.8 26.4 239 227-480 2-270 (282)
290 KOG4532 WD40-like repeat conta 99.1 7.1E-08 1.5E-12 81.6 20.5 191 233-425 83-284 (344)
291 PF15492 Nbas_N: Neuroblastoma 99.0 6.9E-07 1.5E-11 77.0 25.7 226 273-514 3-261 (282)
292 KOG1354 Serine/threonine prote 99.0 4.1E-08 8.8E-13 85.9 18.4 270 222-509 84-431 (433)
293 KOG0882 Cyclophilin-related pe 99.0 7.5E-09 1.6E-13 93.6 13.8 251 221-477 8-313 (558)
294 KOG3914 WD repeat protein WDR4 99.0 6.2E-09 1.4E-13 92.9 13.1 157 356-517 65-228 (390)
295 KOG4532 WD40-like repeat conta 99.0 2.6E-07 5.6E-12 78.3 21.4 261 242-514 50-333 (344)
296 KOG3914 WD repeat protein WDR4 99.0 1.1E-08 2.3E-13 91.5 13.6 159 224-386 64-226 (390)
297 KOG2695 WD40 repeat protein [G 98.9 5.1E-09 1.1E-13 91.5 9.0 153 335-490 236-401 (425)
298 PRK11138 outer membrane biogen 98.9 1.2E-06 2.5E-11 84.9 25.8 259 233-511 119-393 (394)
299 KOG1645 RING-finger-containing 98.9 1.8E-07 4E-12 83.7 18.1 246 261-513 187-462 (463)
300 KOG0309 Conserved WD40 repeat- 98.9 8.9E-09 1.9E-13 98.7 10.2 201 309-515 24-235 (1081)
301 PF08450 SGL: SMP-30/Gluconola 98.9 5.9E-06 1.3E-10 74.3 28.3 217 227-457 4-243 (246)
302 PF00400 WD40: WD domain, G-be 98.9 7.6E-09 1.6E-13 62.8 5.8 38 213-250 2-39 (39)
303 KOG1920 IkappaB kinase complex 98.9 1.9E-06 4.2E-11 87.9 25.7 239 267-510 68-363 (1265)
304 PF13360 PQQ_2: PQQ-like domai 98.9 1.4E-06 3.1E-11 78.1 22.9 216 288-516 2-234 (238)
305 PRK11138 outer membrane biogen 98.8 3E-06 6.5E-11 82.1 26.4 267 233-516 68-357 (394)
306 KOG4649 PQQ (pyrrolo-quinoline 98.8 1.2E-05 2.5E-10 68.4 25.5 264 233-514 62-353 (354)
307 PF00930 DPPIV_N: Dipeptidyl p 98.8 3.2E-06 7E-11 80.3 24.9 263 231-503 1-349 (353)
308 PF00400 WD40: WD domain, G-be 98.8 1.3E-08 2.9E-13 61.8 5.3 39 471-510 1-39 (39)
309 KOG4714 Nucleoporin [Nuclear s 98.8 1E-07 2.3E-12 80.2 11.3 148 362-513 98-255 (319)
310 PF13360 PQQ_2: PQQ-like domai 98.7 4.1E-06 8.8E-11 75.1 22.3 220 243-476 2-237 (238)
311 KOG2114 Vacuolar assembly/sort 98.7 1.9E-06 4.1E-11 84.8 20.9 205 224-436 27-256 (933)
312 PF07433 DUF1513: Protein of u 98.7 3.5E-05 7.5E-10 68.8 26.7 242 226-503 8-277 (305)
313 KOG3617 WD40 and TPR repeat-co 98.7 5.1E-07 1.1E-11 88.3 15.9 272 225-511 18-332 (1416)
314 PF07433 DUF1513: Protein of u 98.7 1.9E-05 4.1E-10 70.5 23.9 189 228-421 56-283 (305)
315 KOG4714 Nucleoporin [Nuclear s 98.7 3.4E-07 7.4E-12 77.2 11.6 168 214-384 81-255 (319)
316 KOG2695 WD40 repeat protein [G 98.7 9.6E-08 2.1E-12 83.7 8.5 143 369-515 228-379 (425)
317 KOG2114 Vacuolar assembly/sort 98.7 1E-05 2.2E-10 79.9 22.9 206 274-484 30-259 (933)
318 KOG3621 WD40 repeat-containing 98.6 3.9E-06 8.5E-11 80.9 19.1 118 221-340 32-155 (726)
319 KOG1275 PAB-dependent poly(A) 98.6 5.4E-07 1.2E-11 89.0 13.4 179 193-381 148-340 (1118)
320 KOG2066 Vacuolar assembly/sort 98.6 4.9E-06 1.1E-10 81.4 18.7 182 222-423 39-233 (846)
321 KOG0882 Cyclophilin-related pe 98.6 7.2E-07 1.6E-11 81.1 11.9 246 265-515 7-308 (558)
322 PF08513 LisH: LisH; InterPro 98.6 9E-08 2E-12 51.4 3.6 27 17-43 1-27 (27)
323 KOG2066 Vacuolar assembly/sort 98.6 1.6E-06 3.4E-11 84.7 14.5 183 309-512 39-233 (846)
324 KOG1832 HIV-1 Vpr-binding prot 98.6 8.4E-08 1.8E-12 94.1 5.6 199 300-513 1092-1292(1516)
325 KOG1645 RING-finger-containing 98.5 8.9E-06 1.9E-10 73.2 17.6 248 211-469 182-461 (463)
326 PF14583 Pectate_lyase22: Olig 98.5 0.00024 5.3E-09 65.6 26.1 295 209-514 17-383 (386)
327 COG0823 TolB Periplasmic compo 98.5 2.7E-05 5.9E-10 74.7 20.9 189 264-459 189-389 (425)
328 KOG1920 IkappaB kinase complex 98.5 6.9E-05 1.5E-09 77.1 24.5 199 221-424 67-323 (1265)
329 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00059 1.3E-08 58.3 26.2 258 234-509 23-297 (354)
330 COG0823 TolB Periplasmic compo 98.5 1.2E-05 2.5E-10 77.2 17.7 196 212-413 182-389 (425)
331 COG5170 CDC55 Serine/threonine 98.5 5.1E-06 1.1E-10 72.1 13.6 237 267-515 26-312 (460)
332 KOG1275 PAB-dependent poly(A) 98.4 6.3E-06 1.4E-10 81.7 14.9 192 233-467 146-340 (1118)
333 PF11768 DUF3312: Protein of u 98.4 0.001 2.2E-08 63.8 28.3 114 312-425 208-331 (545)
334 PF06433 Me-amine-dh_H: Methyl 98.4 0.00077 1.7E-08 61.2 25.8 243 228-479 41-330 (342)
335 PF00930 DPPIV_N: Dipeptidyl p 98.4 5E-05 1.1E-09 72.2 19.6 223 276-503 1-302 (353)
336 PRK02888 nitrous-oxide reducta 98.4 0.00021 4.7E-09 70.0 23.7 182 275-470 200-405 (635)
337 PRK02888 nitrous-oxide reducta 98.4 0.00017 3.7E-09 70.7 22.6 224 278-513 140-405 (635)
338 PF06433 Me-amine-dh_H: Methyl 98.4 0.0017 3.7E-08 59.0 27.3 262 244-516 17-324 (342)
339 KOG0396 Uncharacterized conser 98.3 6.1E-06 1.3E-10 73.5 10.7 121 14-134 113-239 (389)
340 PF02897 Peptidase_S9_N: Proly 98.3 0.0013 2.9E-08 64.3 28.4 243 270-515 126-407 (414)
341 cd00216 PQQ_DH Dehydrogenases 98.3 0.00096 2.1E-08 66.4 27.4 264 234-517 61-429 (488)
342 COG3391 Uncharacterized conser 98.3 0.003 6.5E-08 60.6 29.6 261 224-492 32-309 (381)
343 PF11768 DUF3312: Protein of u 98.3 3.2E-05 6.9E-10 73.8 15.5 119 223-345 206-333 (545)
344 smart00667 LisH Lissencephaly 98.3 1.2E-06 2.5E-11 51.1 3.8 32 15-46 2-33 (34)
345 KOG3617 WD40 and TPR repeat-co 98.3 3E-05 6.5E-10 76.4 15.3 227 225-459 62-375 (1416)
346 PF06977 SdiA-regulated: SdiA- 98.3 0.0012 2.5E-08 58.3 24.0 201 304-509 16-247 (248)
347 PF00780 CNH: CNH domain; Int 98.3 0.0037 8E-08 57.3 28.6 228 232-480 5-266 (275)
348 COG3386 Gluconolactonase [Carb 98.2 0.00082 1.8E-08 61.5 23.2 221 274-503 31-277 (307)
349 PF08596 Lgl_C: Lethal giant l 98.2 0.0008 1.7E-08 64.1 24.0 233 224-458 3-325 (395)
350 KOG1008 Uncharacterized conser 98.2 6.7E-07 1.5E-11 85.0 2.2 198 222-424 56-276 (783)
351 PF02897 Peptidase_S9_N: Proly 98.2 0.0077 1.7E-07 58.9 30.7 243 224-474 125-409 (414)
352 PF14583 Pectate_lyase22: Olig 98.2 0.0012 2.7E-08 61.0 22.6 224 274-503 42-303 (386)
353 PF04053 Coatomer_WDAD: Coatom 98.2 0.00024 5.1E-09 68.6 18.7 194 214-423 24-262 (443)
354 KOG1008 Uncharacterized conser 98.1 9.3E-07 2E-11 84.1 2.2 196 311-512 58-275 (783)
355 cd00216 PQQ_DH Dehydrogenases 98.1 0.0059 1.3E-07 60.8 27.9 236 235-479 111-434 (488)
356 smart00668 CTLH C-terminal to 98.1 4.4E-06 9.4E-11 55.7 3.6 53 51-103 4-56 (58)
357 PF06977 SdiA-regulated: SdiA- 98.0 0.009 1.9E-07 52.8 25.8 202 215-420 14-247 (248)
358 KOG1897 Damage-specific DNA bi 98.0 0.017 3.7E-07 59.0 28.6 283 221-516 529-860 (1096)
359 PF03178 CPSF_A: CPSF A subuni 98.0 0.0026 5.6E-08 59.8 22.5 181 234-420 42-262 (321)
360 PF10607 CLTH: CTLH/CRA C-term 98.0 1.4E-05 3.1E-10 65.1 6.2 129 52-180 5-137 (145)
361 KOG4640 Anaphase-promoting com 98.0 4.6E-05 9.9E-10 72.9 9.9 95 221-319 19-115 (665)
362 PF04841 Vps16_N: Vps16, N-ter 98.0 0.02 4.4E-07 55.4 28.8 168 245-424 62-247 (410)
363 COG3391 Uncharacterized conser 98.0 0.0084 1.8E-07 57.6 25.4 196 223-425 74-285 (381)
364 PF04053 Coatomer_WDAD: Coatom 97.9 0.0049 1.1E-07 59.6 23.1 225 263-512 28-262 (443)
365 KOG4441 Proteins containing BT 97.9 0.0021 4.6E-08 64.7 20.9 217 290-515 302-549 (571)
366 PF04841 Vps16_N: Vps16, N-ter 97.9 0.013 2.8E-07 56.8 25.1 188 209-405 67-271 (410)
367 KOG3621 WD40 repeat-containing 97.9 0.00054 1.2E-08 66.7 14.8 148 266-415 32-190 (726)
368 KOG4441 Proteins containing BT 97.8 0.031 6.7E-07 56.5 27.7 233 231-472 282-549 (571)
369 PF08596 Lgl_C: Lethal giant l 97.8 0.007 1.5E-07 57.8 21.8 227 269-502 3-326 (395)
370 PHA02713 hypothetical protein; 97.8 0.0032 6.9E-08 63.6 20.5 199 278-481 303-545 (557)
371 COG3386 Gluconolactonase [Carb 97.8 0.017 3.8E-07 53.0 23.4 219 229-459 31-275 (307)
372 PRK13616 lipoprotein LpqB; Pro 97.8 0.004 8.7E-08 62.7 20.9 183 222-417 349-562 (591)
373 PF08553 VID27: VID27 cytoplas 97.8 0.0035 7.7E-08 64.1 20.5 194 221-422 429-646 (794)
374 PHA02713 hypothetical protein; 97.8 0.0039 8.4E-08 63.0 21.0 217 290-515 273-536 (557)
375 PF03178 CPSF_A: CPSF A subuni 97.8 0.0074 1.6E-07 56.7 21.5 213 289-508 2-261 (321)
376 smart00320 WD40 WD40 repeats. 97.8 6.3E-05 1.4E-09 44.8 5.1 38 213-250 3-40 (40)
377 KOG4499 Ca2+-binding protein R 97.7 0.018 4E-07 48.8 19.6 219 280-501 28-274 (310)
378 smart00320 WD40 WD40 repeats. 97.7 0.00012 2.5E-09 43.5 5.5 39 471-510 2-40 (40)
379 KOG2079 Vacuolar assembly/sort 97.7 0.0013 2.8E-08 67.4 14.9 103 233-339 98-203 (1206)
380 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0052 1.1E-07 45.9 14.3 100 270-378 2-109 (111)
381 PRK13616 lipoprotein LpqB; Pro 97.6 0.007 1.5E-07 61.0 19.8 186 310-506 350-562 (591)
382 PF14870 PSII_BNR: Photosynthe 97.6 0.049 1.1E-06 49.7 28.8 275 221-509 15-301 (302)
383 COG3204 Uncharacterized protei 97.6 0.04 8.6E-07 48.7 21.0 163 263-425 81-265 (316)
384 KOG2444 WD40 repeat protein [G 97.6 0.00016 3.5E-09 60.6 5.9 143 368-514 33-179 (238)
385 COG3490 Uncharacterized protei 97.5 0.015 3.2E-07 50.9 17.2 199 214-422 111-347 (366)
386 PF00780 CNH: CNH domain; Int 97.5 0.046 1E-06 50.1 21.9 222 277-516 5-259 (275)
387 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.15 3.2E-06 51.2 29.8 55 461-517 441-495 (527)
388 PF14655 RAB3GAP2_N: Rab3 GTPa 97.5 0.11 2.4E-06 49.6 27.2 84 395-479 309-408 (415)
389 PF08553 VID27: VID27 cytoplas 97.5 0.0017 3.6E-08 66.4 12.5 136 373-511 502-646 (794)
390 KOG2395 Protein involved in va 97.4 0.004 8.7E-08 58.9 13.0 140 278-422 344-499 (644)
391 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.026 5.7E-07 42.2 14.7 99 225-333 2-108 (111)
392 PRK10115 protease 2; Provision 97.3 0.27 5.9E-06 51.2 29.6 239 268-514 127-396 (686)
393 KOG1897 Damage-specific DNA bi 97.3 0.27 5.8E-06 50.8 28.0 305 196-510 552-896 (1096)
394 KOG2395 Protein involved in va 97.3 0.0026 5.7E-08 60.1 10.4 131 369-500 350-490 (644)
395 PHA03098 kelch-like protein; P 97.3 0.23 4.9E-06 50.5 25.6 189 232-424 293-512 (534)
396 COG3204 Uncharacterized protei 97.2 0.15 3.2E-06 45.2 21.0 200 307-510 83-310 (316)
397 KOG4640 Anaphase-promoting com 97.2 0.0028 6.1E-08 61.2 9.8 93 267-362 20-114 (665)
398 PRK13684 Ycf48-like protein; P 97.1 0.27 5.8E-06 46.3 28.6 273 222-512 45-331 (334)
399 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.1 0.4 8.6E-06 48.3 29.1 237 235-480 121-501 (527)
400 PF05096 Glu_cyclase_2: Glutam 97.0 0.2 4.4E-06 44.2 24.8 196 301-501 35-250 (264)
401 PF15390 DUF4613: Domain of un 97.0 0.38 8.2E-06 47.0 23.2 123 220-344 54-189 (671)
402 PF10168 Nup88: Nuclear pore c 97.0 0.57 1.2E-05 48.6 25.6 95 267-386 84-182 (717)
403 PF07995 GSDH: Glucose / Sorbo 97.0 0.34 7.5E-06 45.5 25.6 238 224-464 3-330 (331)
404 PF14727 PHTB1_N: PTHB1 N-term 96.9 0.4 8.7E-06 46.0 29.8 269 233-509 36-357 (418)
405 PF14870 PSII_BNR: Photosynthe 96.9 0.31 6.6E-06 44.7 24.5 182 224-414 63-253 (302)
406 KOG2817 Predicted E3 ubiquitin 96.9 0.0058 1.3E-07 55.8 9.1 103 19-121 119-230 (394)
407 KOG2079 Vacuolar assembly/sort 96.9 0.0052 1.1E-07 63.2 9.2 102 363-467 97-201 (1206)
408 PRK10115 protease 2; Provision 96.8 0.78 1.7E-05 47.9 31.1 238 223-472 127-397 (686)
409 PHA02790 Kelch-like protein; P 96.8 0.14 2.9E-06 51.1 18.6 186 278-471 271-472 (480)
410 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0049 1.1E-07 38.3 5.2 34 481-516 11-44 (47)
411 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0066 1.4E-07 37.7 5.6 34 267-301 11-44 (47)
412 COG3490 Uncharacterized protei 96.7 0.37 8E-06 42.5 18.5 202 313-516 71-314 (366)
413 PHA03098 kelch-like protein; P 96.6 0.16 3.6E-06 51.5 18.1 188 278-472 294-514 (534)
414 PF10647 Gmad1: Lipoprotein Lp 96.6 0.51 1.1E-05 42.4 19.0 145 355-502 25-185 (253)
415 TIGR02604 Piru_Ver_Nterm putat 96.6 0.14 3E-06 49.1 16.4 147 223-372 14-202 (367)
416 COG4257 Vgb Streptogramin lyas 96.6 0.48 1E-05 41.6 21.9 212 269-493 63-287 (353)
417 PF15390 DUF4613: Domain of un 96.5 0.24 5.3E-06 48.2 16.9 170 223-404 20-213 (671)
418 KOG2444 WD40 repeat protein [G 96.5 0.0079 1.7E-07 50.8 6.2 138 283-423 34-177 (238)
419 PF14655 RAB3GAP2_N: Rab3 GTPa 96.3 1.1 2.4E-05 43.0 24.5 76 442-517 310-403 (415)
420 PF05694 SBP56: 56kDa selenium 96.1 1 2.2E-05 42.8 18.2 181 227-412 134-392 (461)
421 PHA02790 Kelch-like protein; P 96.0 0.63 1.4E-05 46.4 18.1 148 233-386 271-426 (480)
422 TIGR03074 PQQ_membr_DH membran 96.0 2.5 5.4E-05 44.4 23.0 227 279-517 194-482 (764)
423 PF10647 Gmad1: Lipoprotein Lp 96.0 1.2 2.5E-05 40.1 22.6 147 224-376 25-188 (253)
424 PF05694 SBP56: 56kDa selenium 95.9 1.7 3.8E-05 41.3 23.8 196 233-428 86-347 (461)
425 COG5276 Uncharacterized conser 95.8 1.3 2.7E-05 39.5 26.1 274 221-512 85-369 (370)
426 KOG2377 Uncharacterized conser 95.8 1.7 3.6E-05 41.2 18.1 127 243-372 42-172 (657)
427 COG4257 Vgb Streptogramin lyas 95.8 1.2 2.7E-05 39.2 24.5 241 221-471 60-307 (353)
428 KOG3630 Nuclear pore complex, 95.7 0.17 3.7E-06 53.0 12.2 147 223-371 101-261 (1405)
429 KOG2247 WD40 repeat-containing 95.6 0.002 4.3E-08 60.4 -1.2 145 356-506 37-182 (615)
430 TIGR02604 Piru_Ver_Nterm putat 95.6 1.1 2.5E-05 42.8 17.2 142 268-414 14-204 (367)
431 PF12234 Rav1p_C: RAVE protein 95.5 0.45 9.7E-06 48.0 14.3 112 223-340 30-155 (631)
432 TIGR03074 PQQ_membr_DH membran 95.5 4.1 8.9E-05 42.9 23.4 28 279-306 260-287 (764)
433 KOG3630 Nuclear pore complex, 95.3 0.32 6.8E-06 51.1 12.7 116 309-424 100-229 (1405)
434 PF10168 Nup88: Nuclear pore c 95.2 2.3 4.9E-05 44.3 18.7 78 221-299 83-181 (717)
435 COG5167 VID27 Protein involved 95.2 0.22 4.8E-06 47.5 10.4 137 363-501 477-623 (776)
436 COG5167 VID27 Protein involved 95.1 1.1 2.3E-05 43.1 14.5 141 277-423 477-632 (776)
437 PF07995 GSDH: Glucose / Sorbo 95.0 3.2 7E-05 39.1 28.9 235 269-507 3-330 (331)
438 PF08728 CRT10: CRT10; InterP 94.9 1.8 3.9E-05 44.3 16.6 147 234-382 49-245 (717)
439 KOG2280 Vacuolar assembly/sort 94.9 2.5 5.5E-05 42.8 17.1 196 289-493 64-271 (829)
440 TIGR03118 PEPCTERM_chp_1 conse 94.9 2.8 6.2E-05 37.8 24.5 218 270-491 25-307 (336)
441 PF10395 Utp8: Utp8 family; I 94.8 5.2 0.00011 40.7 23.2 233 273-512 33-305 (670)
442 PF14727 PHTB1_N: PTHB1 N-term 94.6 4.7 0.0001 38.9 27.5 143 278-422 36-203 (418)
443 PF12234 Rav1p_C: RAVE protein 94.5 2.2 4.7E-05 43.3 16.0 113 268-382 30-155 (631)
444 KOG1916 Nuclear protein, conta 94.5 0.073 1.6E-06 54.1 5.6 167 217-386 127-326 (1283)
445 KOG2377 Uncharacterized conser 94.3 0.94 2E-05 42.8 12.0 109 391-501 64-173 (657)
446 TIGR03548 mutarot_permut cycli 94.2 4.9 0.00011 37.7 19.8 106 320-425 72-196 (323)
447 PLN02153 epithiospecifier prot 94.1 5.5 0.00012 37.7 22.3 150 320-472 85-287 (341)
448 COG5276 Uncharacterized conser 94.0 4.4 9.4E-05 36.3 23.1 224 232-468 136-368 (370)
449 PLN02193 nitrile-specifier pro 94.0 7.3 0.00016 38.8 19.8 192 278-473 175-414 (470)
450 PRK13684 Ycf48-like protein; P 93.9 5.7 0.00012 37.5 24.7 105 309-418 172-283 (334)
451 PRK14131 N-acetylneuraminic ac 93.9 6.3 0.00014 37.9 20.2 55 320-374 84-149 (376)
452 PF10313 DUF2415: Uncharacteri 93.9 0.37 8E-06 29.0 5.6 32 268-299 1-35 (43)
453 PF07250 Glyoxal_oxid_N: Glyox 93.8 4.5 9.7E-05 35.8 15.5 140 336-479 49-207 (243)
454 KOG4460 Nuclear pore complex, 93.8 0.69 1.5E-05 44.5 10.3 75 442-516 106-202 (741)
455 KOG2247 WD40 repeat-containing 93.7 0.025 5.4E-07 53.4 0.8 135 271-409 38-175 (615)
456 KOG2280 Vacuolar assembly/sort 93.7 1.9 4.1E-05 43.7 13.5 169 211-386 72-249 (829)
457 KOG4460 Nuclear pore complex, 93.6 2 4.3E-05 41.5 12.9 95 268-386 104-201 (741)
458 PLN00033 photosystem II stabil 93.4 7.8 0.00017 37.4 32.2 149 356-509 241-396 (398)
459 PF10313 DUF2415: Uncharacteri 93.4 0.33 7.3E-06 29.2 4.9 31 223-253 1-34 (43)
460 PF07569 Hira: TUP1-like enhan 93.4 0.41 8.9E-06 41.8 7.7 64 448-513 19-96 (219)
461 KOG1898 Splicing factor 3b, su 93.3 7.4 0.00016 41.2 17.2 136 243-384 911-1049(1205)
462 PF05096 Glu_cyclase_2: Glutam 93.2 5.9 0.00013 35.3 21.2 182 223-413 45-250 (264)
463 COG5290 IkappaB kinase complex 93.2 6 0.00013 40.5 15.8 98 397-497 250-352 (1243)
464 KOG1916 Nuclear protein, conta 93.2 0.12 2.6E-06 52.7 4.5 84 222-309 180-282 (1283)
465 PF10433 MMS1_N: Mono-function 92.7 12 0.00027 37.7 22.0 247 231-491 219-503 (504)
466 TIGR03548 mutarot_permut cycli 92.7 8.8 0.00019 36.0 22.3 108 278-386 72-197 (323)
467 PF09398 FOP_dimer: FOP N term 92.6 0.21 4.6E-06 35.1 3.9 31 18-48 20-50 (81)
468 KOG2063 Vacuolar assembly/sort 92.5 16 0.00035 38.7 19.6 71 230-301 22-100 (877)
469 TIGR03547 muta_rot_YjhT mutatr 92.4 10 0.00022 36.0 20.6 55 320-374 63-128 (346)
470 KOG4499 Ca2+-binding protein R 91.8 8 0.00017 33.5 17.6 213 235-457 28-272 (310)
471 PF07569 Hira: TUP1-like enhan 91.8 1.5 3.3E-05 38.2 9.2 63 361-424 18-96 (219)
472 PF11715 Nup160: Nucleoporin N 91.5 1.2 2.7E-05 45.4 9.7 73 232-305 156-256 (547)
473 PF14781 BBS2_N: Ciliary BBSom 91.4 5.8 0.00012 31.1 12.9 114 360-476 5-132 (136)
474 KOG3616 Selective LIM binding 91.3 8.8 0.00019 39.0 14.5 78 221-305 13-90 (1636)
475 KOG1983 Tomosyn and related SN 91.3 11 0.00023 41.3 16.5 29 223-251 36-64 (993)
476 PF13449 Phytase-like: Esteras 91.0 14 0.0003 34.8 18.7 108 221-329 18-166 (326)
477 COG5290 IkappaB kinase complex 91.0 14 0.00031 37.9 15.6 104 314-418 251-361 (1243)
478 PF10214 Rrn6: RNA polymerase 90.8 26 0.00056 37.5 18.9 190 185-382 111-328 (765)
479 PF14781 BBS2_N: Ciliary BBSom 90.6 6.9 0.00015 30.6 11.4 113 227-345 3-129 (136)
480 COG3877 Uncharacterized protei 90.6 1.2 2.6E-05 32.4 5.9 83 10-112 38-122 (122)
481 PF09862 DUF2089: Protein of u 90.5 0.64 1.4E-05 35.0 4.8 76 17-111 36-113 (113)
482 PLN02153 epithiospecifier prot 90.4 16 0.00035 34.6 22.7 108 278-386 85-228 (341)
483 PF08728 CRT10: CRT10; InterP 90.2 4.7 0.0001 41.5 12.0 105 233-340 113-245 (717)
484 COG3823 Glutamine cyclotransfe 89.9 11 0.00025 32.0 15.5 178 320-501 55-248 (262)
485 KOG4659 Uncharacterized conser 89.7 36 0.00078 37.5 21.4 34 218-251 343-383 (1899)
486 PLN02193 nitrile-specifier pro 89.3 25 0.00054 35.1 21.4 148 278-425 228-412 (470)
487 PLN00033 photosystem II stabil 89.2 22 0.00048 34.3 24.5 105 312-421 241-354 (398)
488 TIGR02276 beta_rpt_yvtn 40-res 89.0 2.1 4.5E-05 25.6 5.6 40 449-489 1-41 (42)
489 KOG2006 WD40 repeat protein [G 88.9 8 0.00017 40.9 12.6 76 223-298 149-226 (1023)
490 KOG1900 Nuclear pore complex, 88.7 25 0.00054 38.6 16.1 138 241-384 96-273 (1311)
491 PF14761 HPS3_N: Hermansky-Pud 88.7 15 0.00032 31.6 12.5 58 235-294 29-92 (215)
492 KOG1520 Predicted alkaloid syn 88.4 13 0.00028 34.9 12.4 110 310-422 115-248 (376)
493 KOG1896 mRNA cleavage and poly 88.4 22 0.00047 38.7 15.2 144 235-382 1047-1212(1366)
494 PF07676 PD40: WD40-like Beta 88.3 2.3 5E-05 25.0 5.3 33 217-249 3-38 (39)
495 TIGR03118 PEPCTERM_chp_1 conse 88.1 20 0.00044 32.6 23.1 201 223-425 23-281 (336)
496 PF07250 Glyoxal_oxid_N: Glyox 87.6 18 0.00039 32.1 12.5 134 290-425 47-199 (243)
497 TIGR02276 beta_rpt_yvtn 40-res 87.6 3.3 7.2E-05 24.6 5.9 31 277-307 1-32 (42)
498 PF07676 PD40: WD40-like Beta 87.5 3 6.4E-05 24.5 5.5 31 479-509 6-38 (39)
499 PF02333 Phytase: Phytase; In 87.1 28 0.00061 33.1 19.6 194 318-514 65-292 (381)
500 PF05935 Arylsulfotrans: Aryls 86.6 37 0.0008 33.9 16.4 144 335-481 130-313 (477)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-86 Score=575.88 Aligned_cols=511 Identities=50% Similarity=0.828 Sum_probs=478.6
Q ss_pred CCCCccc-cCCCCCCchHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHHHHHHHHHcCChHHHHHHhhcccCCCh
Q 042434 1 MENSSTM-IGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLND 79 (517)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~ 79 (517)
|.|+++| +++|+.+.+-|++|+++|+|...||.+|+.+||.|+|+.+.+...+.|.+.++.|+|++++..+..+.+.++
T Consensus 1 ~~ng~~~~l~~k~likk~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de 80 (519)
T KOG0293|consen 1 YQNGSNEILGSKGLIKKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDE 80 (519)
T ss_pred CCCcchhhhhhhceeccchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcch
Confidence 6777777 899999999999999999999999999999999999999999989999999999999999999999988888
Q ss_pred hhhcccchhhhhhhhhHhhhcCChhHHHHHHHhhcccCCCChhHHhhhhhcccccccccccc-CCcchhhhHHHHHHHHH
Q 042434 80 ERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNLGK-IDEGVVLELRKRLLVEL 158 (517)
Q Consensus 80 ~~~~~~~~~~~~~~~~el~~~~~~~~a~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~r~~l~~~~ 158 (517)
...+.+.|++.+|+|+|++..|....|+..||+.+.++.+..+++++|+..+..+.+..... .........|..++.++
T Consensus 81 ~~~~ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~el 160 (519)
T KOG0293|consen 81 RNRKEAMFLVNKQIFLEFLKTGSISHALPVLRNPVLYLRKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDEL 160 (519)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccHhhhhHhhhcchhhhhhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999998888763322222 22223456899999999
Q ss_pred HHhCCCCCCCCcchHHHHHHHHHHhccccccCCCCCccccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEE
Q 042434 159 ERLLPPPEVVPERRLEHLVETAVTSQIDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLA 238 (517)
Q Consensus 159 ~~~~~~~~~~~~~rl~~l~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~ 238 (517)
++.+||+.++|+.||++|++|+...|..+|.||+.-..++++.|+.|...++|.+..+.+..|+++|+-+.||++|+|||
T Consensus 161 skyi~p~illP~rRLehLl~qAv~~Q~d~cvyhnsldsvsll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLA 240 (519)
T KOG0293|consen 161 SKYIPPNILLPKRRLEHLLEQAVKYQRDSCVYHNSLDSVSLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLA 240 (519)
T ss_pred HhhCCHhhcCChHHHHHHHHHHHHHHHhHhHHhcccchhhhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEe
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred EeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC-CCCCceEEEEE
Q 042434 239 SSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAW 317 (517)
Q Consensus 239 t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~ 317 (517)
+++.|.+..+|.+.....++..+++.+|..+|..+.||||.++|++|+.|..+.+||+.+|.+...+. ++...+.+++|
T Consensus 241 saSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W 320 (519)
T KOG0293|consen 241 SASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAW 320 (519)
T ss_pred eccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEE
Confidence 99999999999998888888999999999999999999999999999999999999999999988875 34688999999
Q ss_pred eCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCe
Q 042434 318 FPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPI 396 (517)
Q Consensus 318 ~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i 396 (517)
.|||..+++|+.|++ +..|+.+++....|.+-....|.++++++||+++++.+.|..|++|+..+.. ........++
T Consensus 321 ~pDg~~~V~Gs~dr~--i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~i 398 (519)
T KOG0293|consen 321 CPDGFRFVTGSPDRT--IIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPI 398 (519)
T ss_pred ccCCceeEecCCCCc--EEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCce
Confidence 999999999999999 9999999999999999888899999999999999999999999999998877 4477888999
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEE
Q 042434 397 TSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEI 476 (517)
Q Consensus 397 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 476 (517)
+++++|.+++++++.-.+..+.+||+... ..+.++.||..+.+.|++||...+..++++||+|+.|+||+..+|+++.+
T Consensus 399 ts~~iS~d~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 399 TSFSISKDGKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV 477 (519)
T ss_pred eEEEEcCCCcEEEEEcccCeeEEeecchh-hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe
Confidence 99999999999999999999999999854 88999999999999999999988999999999999999999999999999
Q ss_pred ecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 477 LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 477 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
+.||...|++|+|+|..+.++||+|+||+||||.+...
T Consensus 478 LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 478 LSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99999999999999999999999999999999998743
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.1e-69 Score=454.12 Aligned_cols=482 Identities=21% Similarity=0.323 Sum_probs=399.8
Q ss_pred CchHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecC-hhHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhh
Q 042434 14 IKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKS-KGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQ 92 (517)
Q Consensus 14 ~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~-~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 92 (517)
+...+++|||+|||+|++++.|+++||+|.++++|+ ++++.|.+.|.+|+||.++..++++++++ +.+..+|||
T Consensus 5 iessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~-----kkL~dLYEq 79 (508)
T KOG0275|consen 5 IESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPD-----KKLIDLYEQ 79 (508)
T ss_pred eecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCch-----hHHHHHHHH
Confidence 556799999999999999999999999999999999 89999999999999999999999998865 558889999
Q ss_pred hhhHhhhcCChhHHHHHHHhhc--ccC-CCChhHHhhhhhccccccccccccCCcchhhhHHHHHHHHHHHhCCCCCCCC
Q 042434 93 CFLEYLNRGDDSLALNVLRKRV--SSL-QMSKDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVELERLLPPPEVVP 169 (517)
Q Consensus 93 ~~~el~~~~~~~~a~~~lr~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~ 169 (517)
..+||+|.+|...|+.+||+.- ..+ +.+++|+.+|.+++..+.-.+..+......++.|..+.+.+. .+...+|
T Consensus 80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~dssKEkrRa~IAQ~ls---~EV~VVp 156 (508)
T KOG0275|consen 80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGDSSKEKRRAVIAQALS---GEVHVVP 156 (508)
T ss_pred HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCcchHHHHHHHHHHHhc---CceEEcC
Confidence 9999999999999999999872 223 338899999999999863333333333333334444433333 4557799
Q ss_pred cchHHHHHHHHHHhccccccCCCCCccccccCCCcccc----cCCCcccEEEec-cccCcEEEEEECCCCCEEEEeeCCC
Q 042434 170 ERRLEHLVETAVTSQIDSCQYHNSSVAISLYEDHCCGR----DQIPTETVQILT-EHKNEVWFVQFSNNGEYLASSSSDC 244 (517)
Q Consensus 170 ~~rl~~l~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~-~h~~~v~~~~~s~~~~~l~t~~~dg 244 (517)
|.||..|+.|+++||..+...+|+. .+.++.+..... +..|....+.++ |.++.+-|..|||||+||++|+.||
T Consensus 157 pSRLlaLlGQaLKWQqHQGLLPPGt-~iDLFRGkAA~K~~~Ee~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDG 235 (508)
T KOG0275|consen 157 PSRLLALLGQALKWQQHQGLLPPGT-TIDLFRGKAAMKDQEEERYPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDG 235 (508)
T ss_pred hHHHHHHHHHHhhhHhhcCCCCCCc-eeeeccchhhhhhhHhhhchHHhhhheecccccchhheeeCCCCceEeeccccc
Confidence 9999999999999999998887655 566666654433 345666666554 5778899999999999999999999
Q ss_pred cEEEEEecCCCe-----eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC-CCCCceEEEEEe
Q 042434 245 SAIIWKVLEDSK-----LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAWF 318 (517)
Q Consensus 245 ~i~iw~~~~~~~-----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~ 318 (517)
.|.||+..+++- ++....+..+..+|.|++|+.|...+|+|+.||.|++|.+.+|.|++.|. .|...|+|+.|+
T Consensus 236 FiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FS 315 (508)
T KOG0275|consen 236 FIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFS 315 (508)
T ss_pred eeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEc
Confidence 999999976632 23334567789999999999999999999999999999999999999997 899999999999
Q ss_pred CCCCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce----EEeeccC
Q 042434 319 PDSKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA----ERVISEE 393 (517)
Q Consensus 319 ~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~ 393 (517)
.|+..+++++.|.+ +.+..+. |+.++.++++. +.|+...|+++|..+++++.||+|++|+..+.. .......
T Consensus 316 rD~SqiLS~sfD~t--vRiHGlKSGK~LKEfrGHs-Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d 392 (508)
T KOG0275|consen 316 RDNSQILSASFDQT--VRIHGLKSGKCLKEFRGHS-SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD 392 (508)
T ss_pred cCcchhhcccccce--EEEeccccchhHHHhcCcc-ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc
Confidence 99999999999999 5555554 56667777665 589999999999999999999999999998876 2233455
Q ss_pred CCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceEEeC-cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434 394 HPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG-HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS 471 (517)
Q Consensus 394 ~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 471 (517)
.+|.++..-| +...++++...+++++.++.+. .++.+.. ...+...+ ++..+|.|.++++.++|+.++.|.+.+|
T Consensus 393 ~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ--vVrsfsSGkREgGdFi-~~~lSpkGewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 393 YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ--VVRSFSSGKREGGDFI-NAILSPKGEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred ccceeEEEcCCCCceEEEEcCCCeEEEEeccce--EEeeeccCCccCCceE-EEEecCCCcEEEEEccCcEEEEEEeecC
Confidence 6788888777 5678999999999999999774 5555543 33333334 4445999999999999999999999999
Q ss_pred ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 472 KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 472 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
++-.++..|...|..++-+|.. +++|+-+.||.+++|..
T Consensus 470 ~LE~tl~VhEkdvIGl~HHPHq-NllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 470 KLERTLPVHEKDVIGLTHHPHQ-NLLASYSEDGLLKLWKP 508 (508)
T ss_pred ceeeeeecccccccccccCccc-chhhhhcccchhhhcCC
Confidence 9999999999999999999998 79999999999999974
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-51 Score=353.15 Aligned_cols=300 Identities=24% Similarity=0.370 Sum_probs=267.1
Q ss_pred cccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE
Q 042434 206 GRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC 285 (517)
Q Consensus 206 ~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 285 (517)
..-+....+...+.||.++|.|++|+|+|..||+|+.|.++++||+.+. .+..+.++|...|.|++|+|||+.||+|
T Consensus 99 frvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te---Tp~~t~KgH~~WVlcvawsPDgk~iASG 175 (480)
T KOG0271|consen 99 FRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE---TPLFTCKGHKNWVLCVAWSPDGKKIASG 175 (480)
T ss_pred hcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC---CcceeecCCccEEEEEEECCCcchhhcc
Confidence 3445556788899999999999999999999999999999999999766 5668999999999999999999999999
Q ss_pred eCCCeEEEEECCCCcEE-EEeCCCCCceEEEEEeC-----CCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEE
Q 042434 286 GNAEVLKLWDVETGICK-HTFGDHGFIVSSCAWFP-----DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDL 359 (517)
Q Consensus 286 ~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~i~~~~-----~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~ 359 (517)
+.||+|++||.++|+++ +.+.+|...|++++|.| ..++|++++.||. +.+||............|..+|+|+
T Consensus 176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~--vrIWd~~~~~~~~~lsgHT~~VTCv 253 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS--VRIWDTKLGTCVRTLSGHTASVTCV 253 (480)
T ss_pred ccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCC--EEEEEccCceEEEEeccCccceEEE
Confidence 99999999999998765 57889999999999976 5779999999999 8889988766666666666799999
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEc-----------CCCC--------------------
Q 042434 360 AVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVS-----------VDCK-------------------- 406 (517)
Q Consensus 360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s-----------~~~~-------------------- 406 (517)
.|-.+| ++++|+.|++|++|+...+. ....+|.+.|+.++.+ |.++
T Consensus 254 rwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~ 332 (480)
T KOG0271|consen 254 RWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL 332 (480)
T ss_pred EEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence 998655 89999999999999998877 6777888999988877 2233
Q ss_pred -----EEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC
Q 042434 407 -----NFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS 481 (517)
Q Consensus 407 -----~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 481 (517)
.+++|+.|.++.+|+.....+++.+..+|..- +..+.||||++++|+++.|..|++||.++|+.+.+|.||-
T Consensus 333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l---Vn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL---VNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred ccCcceeEEecCCceEEEecccccccchhhhhchhhh---eeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 49999999999999987776788888899876 5566679999999999999999999999999999999999
Q ss_pred CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 482 MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 482 ~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
+.|+.++|+.|. ++|++||.|.++++|++++.+
T Consensus 410 ~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 410 AAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred ceeEEEEeccCc-cEEEEcCCCceEEEEEeeeee
Confidence 999999999998 799999999999999998765
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-47 Score=331.19 Aligned_cols=318 Identities=24% Similarity=0.390 Sum_probs=272.2
Q ss_pred HhccccccCCCCCc-cccccCCCcc-cccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeE
Q 042434 182 TSQIDSCQYHNSSV-AISLYEDHCC-GRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTL 259 (517)
Q Consensus 182 ~~q~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~ 259 (517)
...+.+..|.|... .++.+.|... .|+.....+..+.++|..-|.|++|+|||+.||+|+.||+|++||..+++. .
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~--~ 192 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ--I 192 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc--c
Confidence 33445556766554 4555555554 566667778999999999999999999999999999999999999987753 4
Q ss_pred EEEeccCCCCEEEEEECC-----CCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCcee
Q 042434 260 KHTLRSHQNPVSFVAWSP-----DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKG 334 (517)
Q Consensus 260 ~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~ 334 (517)
...+.+|...|++++|.| ..++||+++.||+|+|||+..+.++..+.+|+.+|+|+.|--+| ++++|+.|++
T Consensus 193 g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~Drt-- 269 (480)
T KOG0271|consen 193 GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRT-- 269 (480)
T ss_pred cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCce--
Confidence 578999999999999976 56899999999999999999999999999999999999997544 8999999999
Q ss_pred EEEEeCC-CCeeEeeeCcCCCceEEEEEc-----------cCC-------------------------CEEEEEeCCCcE
Q 042434 335 IFMCDCD-GNEIKAWRGTRIPKVLDLAVT-----------PDG-------------------------ENLISVLSDKDI 377 (517)
Q Consensus 335 i~~~~~~-~~~~~~~~~~~~~~i~~~~~~-----------~~~-------------------------~~l~~~~~dg~i 377 (517)
|.+|+.. |...+.+.+|. ..|+.++.+ |.+ ..+++|+.|.++
T Consensus 270 Ikvw~a~dG~~~r~lkGHa-hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tl 348 (480)
T KOG0271|consen 270 IKVWRALDGKLCRELKGHA-HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTL 348 (480)
T ss_pred EEEEEccchhHHHhhcccc-hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceE
Confidence 6777765 44445555443 578777766 223 359999999999
Q ss_pred EEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE
Q 042434 378 RILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI 454 (517)
Q Consensus 378 ~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 454 (517)
.+|+....+ .....|..-|+.+.||||++++++++-|..|++||.+++ +....+.+|...++.+. |+.|.++|
T Consensus 349 flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqva---wsaDsRLl 424 (480)
T KOG0271|consen 349 FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVA---WSADSRLL 424 (480)
T ss_pred EEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc-chhhhhhhccceeEEEE---eccCccEE
Confidence 999986554 566788889999999999999999999999999999998 88889999998866654 48899999
Q ss_pred EEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 455 ASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 455 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
++|+.|.++++||+++.++...++||.+.|.++.|+||| ..+++|+.|..+++|.
T Consensus 425 VS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG-~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDG-QRVASGGKDKVLRLWR 479 (480)
T ss_pred EEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCC-ceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999 7999999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.8e-47 Score=331.41 Aligned_cols=284 Identities=23% Similarity=0.316 Sum_probs=261.3
Q ss_pred eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCeEEEEE
Q 042434 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD--DTKLLTCGNAEVLKLWD 295 (517)
Q Consensus 218 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd 295 (517)
-.|-+.+|..+.||+|++.|||||.+|.++||+..+. ....++.+|...|.++.|+|. +..+|+|+.||++++|+
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence 3467889999999999999999999999999999644 667899999999999999997 57899999999999999
Q ss_pred CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC
Q 042434 296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK 375 (517)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 375 (517)
+.+..++..+.+|...|..++|+|+|++|++++.|.+ -.+||..++.......+|...|.+++|.+||..+++|+.|.
T Consensus 248 ~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t--WRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~ 325 (459)
T KOG0272|consen 248 LSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDST--WRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS 325 (459)
T ss_pred cCCCcchhhhhcchhhheeeeecCCCceeeecccccc--hhhcccccchhhHhhcccccccceeEecCCCceeeccCccc
Confidence 9999999999999999999999999999999999999 88899998877777777878999999999999999999999
Q ss_pred cEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC-CCc
Q 042434 376 DIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGT 452 (517)
Q Consensus 376 ~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~ 452 (517)
.-+|||++++. ...-+|..+|.+++|+|+|..+++|+.|+++++||++.. .....+.+|..-+..+ .++| .|.
T Consensus 326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS~V---k~~p~~g~ 401 (459)
T KOG0272|consen 326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVSQV---KYSPQEGY 401 (459)
T ss_pred hhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-ccceecccccchhhhe---EecccCCe
Confidence 99999999998 455578889999999999999999999999999999987 6688888898864444 4466 789
Q ss_pred EEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 453 FIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 453 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
+|++++.|+++++|...++.++.++.||.+.|.+++.++++ ..++|++.|.++++|..
T Consensus 402 fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~-~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDS-QAIATSSFDRTIKLWRP 459 (459)
T ss_pred EEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCC-ceEEEeccCceeeeccC
Confidence 99999999999999999999999999999999999999999 79999999999999963
No 6
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-44 Score=319.90 Aligned_cols=298 Identities=22% Similarity=0.383 Sum_probs=250.9
Q ss_pred CCCcccEEEeccccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCe-eeE----EEE--e----ccCCCCEEEEEEC
Q 042434 209 QIPTETVQILTEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSK-LTL----KHT--L----RSHQNPVSFVAWS 276 (517)
Q Consensus 209 ~~~~~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~-~~~----~~~--~----~~h~~~v~~l~~s 276 (517)
.+|....+.+. |+.+|.+++|+|-.. .+++|+.|-..++|++..... ... .+. . ...+..|++++|+
T Consensus 166 ~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn 244 (524)
T KOG0273|consen 166 EIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN 244 (524)
T ss_pred cccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec
Confidence 46777788888 999999999999655 899999999999999964110 000 000 0 1124679999999
Q ss_pred CCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCce
Q 042434 277 PDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKV 356 (517)
Q Consensus 277 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i 356 (517)
.+|..||+|+.||.+++|+. +|..+.++..|+++|.++.|+.+|.+|++++.|++ +.+||............+..+.
T Consensus 245 ~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~t--tilwd~~~g~~~q~f~~~s~~~ 321 (524)
T KOG0273|consen 245 NDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGT--TILWDAHTGTVKQQFEFHSAPA 321 (524)
T ss_pred CCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCcc--EEEEeccCceEEEeeeeccCCc
Confidence 99999999999999999996 67888899999999999999999999999999999 8999998777766666555455
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeC
Q 042434 357 LDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG 434 (517)
Q Consensus 357 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 434 (517)
.++.|-.+ ..+++.+.|+.|+|+.+.... .....|.++|.++.|.|.+..|++++.|+++++|..... .....+.+
T Consensus 322 lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l~~ 399 (524)
T KOG0273|consen 322 LDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDLQA 399 (524)
T ss_pred cceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhhhh
Confidence 66777644 478899999999999887655 777889999999999999999999999999999998665 66777788
Q ss_pred cccCceEEEeecCCCC---------CcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCc
Q 042434 435 HSQNKYVIRSCFGGLD---------GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHT 505 (517)
Q Consensus 435 ~~~~~~~i~~~~~s~~---------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~ 505 (517)
|....+.+. |+|. +..+++++.|++|++||+..|.++++|..|..+|.+++|+|+| .++|+|+.||.
T Consensus 400 Hskei~t~~---wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~ 475 (524)
T KOG0273|consen 400 HSKEIYTIK---WSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGC 475 (524)
T ss_pred hccceeeEe---ecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC-cEEEecCCCCe
Confidence 887655444 3553 4579999999999999999999999999999999999999999 79999999999
Q ss_pred EEEeCCCCCCC
Q 042434 506 IRIWGPCQSSE 516 (517)
Q Consensus 506 v~iw~~~~~~~ 516 (517)
|.||+.++++-
T Consensus 476 V~iws~~~~~l 486 (524)
T KOG0273|consen 476 VHIWSTKTGKL 486 (524)
T ss_pred eEeccccchhe
Confidence 99999998763
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2e-43 Score=294.65 Aligned_cols=290 Identities=20% Similarity=0.358 Sum_probs=259.4
Q ss_pred cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL 291 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 291 (517)
.+..++|+||.+.|+++.|++|+++++++|.||.+.|||..+..+. +.+......|..++|+|.|+++|+|+.|...
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~---haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV---HAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce---eEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 3455899999999999999999999999999999999999776543 4555568899999999999999999999999
Q ss_pred EEEECCCC------cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc-C
Q 042434 292 KLWDVETG------ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP-D 364 (517)
Q Consensus 292 ~iwd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 364 (517)
.||++.+. ...+.+.+|.+.+.|+.|.+ ...|++++.|.+ ..+||.+..+.......|.+.|.++.++| +
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~T--CalWDie~g~~~~~f~GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMT--CALWDIETGQQTQVFHGHTGDVMSLSLSPSD 198 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCce--EEEEEcccceEEEEecCCcccEEEEecCCCC
Confidence 99999855 34567889999999999987 568999999999 99999987666665666678999999999 9
Q ss_pred CCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEE
Q 042434 365 GENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI 442 (517)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i 442 (517)
++.+++|+.|+..++||++.+. ..+..|...|+++.|.|+|.-+++|+.|++.++||++.. ..+..+. +......+
T Consensus 199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD-~~~a~ys-~~~~~~gi 276 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD-QELAVYS-HDSIICGI 276 (343)
T ss_pred CCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC-cEEeeec-cCcccCCc
Confidence 9999999999999999999987 777889999999999999999999999999999999986 4444444 55556678
Q ss_pred EeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 443 RSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 443 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
.++.||..|++|++|..|.++.+||.-.++.+..+.+|.+.|+++..+||| ..++|||.|.++|||.
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG-~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDG-MAVATGSWDSTLRIWA 343 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCC-cEEEecchhHheeecC
Confidence 888899999999999999999999999999999999999999999999999 7999999999999995
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-41 Score=278.52 Aligned_cols=292 Identities=22% Similarity=0.300 Sum_probs=252.7
Q ss_pred ccEEEeccccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCCCe--eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434 213 ETVQILTEHKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDSK--LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE 289 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 289 (517)
....++++|++.|+.++..+. ...+++++.|.++.+|++..... ..+.+.+.+|...|..+..++||++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 345678999999999999885 67889999999999999965422 245788999999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcC-CCceEEEEEccC--CC
Q 042434 290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTR-IPKVLDLAVTPD--GE 366 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~--~~ 366 (517)
++++||+.+|+..+.|.+|...|.+++|++|.+.+++|+.|.+ +.+|+..+.+........ .+.|.|+.|+|+ ..
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkT--iklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKT--IKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcce--eeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 9999999999999999999999999999999999999999999 999999988877766654 679999999998 67
Q ss_pred EEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEe
Q 042434 367 NLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS 444 (517)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~ 444 (517)
.+++++.|+++++||+++.+ ....+|.+.++.+++||||...++|+.||.+.+||++.+ +....+.+.. .+.+
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~-k~lysl~a~~----~v~s 238 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG-KNLYSLEAFD----IVNS 238 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC-ceeEeccCCC----eEee
Confidence 99999999999999999988 667789999999999999999999999999999999877 4444443322 3788
Q ss_pred ecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC----C-----CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG----H-----SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----h-----~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
++|+|+..+|+.+.. ..|+|||+.++.++..+.. . .....+++|+++| ..|++|-.|+.|++|.+..
T Consensus 239 l~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG-~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 239 LCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADG-QTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCC-cEEEeeecCCcEEEEEeec
Confidence 888998877776654 4599999999988877652 1 2345788999999 7899999999999998753
No 9
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3e-43 Score=312.93 Aligned_cols=297 Identities=24% Similarity=0.413 Sum_probs=269.8
Q ss_pred cCCCcccEEEeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe
Q 042434 208 DQIPTETVQILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG 286 (517)
Q Consensus 208 ~~~~~~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 286 (517)
..+|.+.+.++.||+..|+++.|.| .+.+|++|+.|+.|+||++... ..+++++.+|..+|.+++|+++|..++++|
T Consensus 200 c~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~--~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s 277 (503)
T KOG0282|consen 200 CYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD--RRCLRTFKGHRKPVRDASFNNCGTSFLSAS 277 (503)
T ss_pred eeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC--cceehhhhcchhhhhhhhccccCCeeeeee
Confidence 3568899999999999999999999 8999999999999999999753 367899999999999999999999999999
Q ss_pred CCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCC
Q 042434 287 NAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG 365 (517)
Q Consensus 287 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 365 (517)
.|+.+++||+++|+++..+ .....++|+.|+|++ +.|++|+.|+. |..||.+...+..-..++.+.|..+.|-++|
T Consensus 278 fD~~lKlwDtETG~~~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~k--i~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 278 FDRFLKLWDTETGQVLSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKK--IRQWDIRSGKVVQEYDRHLGAILDITFVDEG 354 (503)
T ss_pred cceeeeeeccccceEEEEE-ecCCCceeeecCCCCCcEEEEecCCCc--EEEEeccchHHHHHHHhhhhheeeeEEccCC
Confidence 9999999999999999998 456678999999998 88999999999 9999999888777777788899999999999
Q ss_pred CEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC--CccceEEeCcccCce
Q 042434 366 ENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK--WEKPFKYTGHSQNKY 440 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~ 440 (517)
+++++.+.|++++||+.+... .......+...++..+|+++++++-+.|+.|.+|.+... ......+.+|....+
T Consensus 355 ~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy 434 (503)
T KOG0282|consen 355 RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY 434 (503)
T ss_pred ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc
Confidence 999999999999999998876 333345567889999999999999999999999997543 244567889999888
Q ss_pred EEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 441 VIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 441 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
.+.+-+ ||||.+|++|+.||.+.+||.++-+++..+++|.+++..+.|+|..+..+||||.||.|++|+
T Consensus 435 s~~v~f-SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 435 SCQVDF-SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeeEEE-cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 887766 999999999999999999999999999999999999999999999989999999999999997
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.1e-39 Score=263.51 Aligned_cols=272 Identities=24% Similarity=0.375 Sum_probs=235.8
Q ss_pred CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc--EEEEeCCCCCce
Q 042434 235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI--CKHTFGDHGFIV 312 (517)
Q Consensus 235 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v 312 (517)
-+|+++|.|.+|++|...++ .+..++....+.|..+...||++.||+++.. .|++||+.+++ ++.+|.+|...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCce
Confidence 48999999999999999877 5667888778899999999999999998765 79999998875 588999999999
Q ss_pred EEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEe
Q 042434 313 SSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERV 389 (517)
Q Consensus 313 ~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~ 389 (517)
+++.|..+|+.+++|+.||+ +.+||++.........+. .+|+++..+|+...|++|..+|.|++||+.... ...
T Consensus 87 taVgF~~dgrWMyTgseDgt--~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGT--VKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred EEEEEeecCeEEEecCCCce--EEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 99999999999999999999 788888875555544444 689999999999999999999999999998875 344
Q ss_pred eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC-----CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEE
Q 042434 390 ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK-----WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIY 464 (517)
Q Consensus 390 ~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 464 (517)
.....++.++.+.|||.+++.+...|..++|++-+. ..++.++..|... +..|.+|||+++|+++|.|.+++
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~---il~C~lSPd~k~lat~ssdktv~ 240 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH---ILRCLLSPDVKYLATCSSDKTVK 240 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce---EEEEEECCCCcEEEeecCCceEE
Confidence 455678999999999999999999999999998543 2344556666543 44455599999999999999999
Q ss_pred EEecCCC-ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434 465 IWNRRNS-KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV 517 (517)
Q Consensus 465 iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v 517 (517)
||+..+. +.-..+.+|...+.+.+||.+| .+|+||+.|+.+++|++..+++|
T Consensus 241 iwn~~~~~kle~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 241 IWNTDDFFKLELVLTGHQRWVWDCAFSADG-EYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred EEecCCceeeEEEeecCCceEEeeeeccCc-cEEEecCCCCceeecccccCcee
Confidence 9999887 7777889999999999999999 79999999999999999999864
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-40 Score=285.98 Aligned_cols=288 Identities=24% Similarity=0.405 Sum_probs=261.2
Q ss_pred ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEE
Q 042434 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLK 292 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 292 (517)
...+.+.+|..+|+.+-|+|+-..+++++.|++|++||..++ +....+++|.+.|.+++|+..|+++++++.|-.++
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg---~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG---ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch---hhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 455667789999999999999999999999999999999776 45788999999999999999999999999999999
Q ss_pred EEECCC-CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCCCEEEE
Q 042434 293 LWDVET-GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDGENLIS 370 (517)
Q Consensus 293 iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 370 (517)
+||.++ .++++...+|...|.++.|-|.|.++++++.|.+ |..|+..+ .++..+.++. ..|..+..+.||..+++
T Consensus 176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t--ik~We~~tg~cv~t~~~h~-ewvr~v~v~~DGti~As 252 (406)
T KOG0295|consen 176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT--IKAWECDTGYCVKTFPGHS-EWVRMVRVNQDGTIIAS 252 (406)
T ss_pred heeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccc--eeEEecccceeEEeccCch-HhEEEEEecCCeeEEEe
Confidence 999977 5778888899999999999999999999999999 78888875 5556666655 49999999999999999
Q ss_pred EeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCC---------------CCEEEEEeCCCeEEEEEcCCCCccceEEe
Q 042434 371 VLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVD---------------CKNFIVNLNSQEIHMWDVAGKWEKPFKYT 433 (517)
Q Consensus 371 ~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~---------------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 433 (517)
++.|.++++|-+.++. .....|.+++.+++|.|. +.++.+++.|++|++||+.++ ....++.
T Consensus 253 ~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ 331 (406)
T KOG0295|consen 253 CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLV 331 (406)
T ss_pred cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEe
Confidence 9999999999999885 677789999999999873 247899999999999999998 8899999
Q ss_pred CcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 434 GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 434 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
+|... ++.+.++|.|+||+++.+|+++++||++++++..++..|..-|++++|+.+.+ +++||+-|.++++|..
T Consensus 332 ghdnw---Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p-~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 332 GHDNW---VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWEC 405 (406)
T ss_pred cccce---eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCc-eEEeccccceeeeeec
Confidence 99886 66777799999999999999999999999999999999999999999999985 9999999999999974
No 12
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.7e-38 Score=261.32 Aligned_cols=288 Identities=25% Similarity=0.384 Sum_probs=235.0
Q ss_pred ccEEEeccccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCCCeeeEEEEe-ccCCCCEEEEEECCCCCeEEEEeCCCe
Q 042434 213 ETVQILTEHKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDSKLTLKHTL-RSHQNPVSFVAWSPDDTKLLTCGNAEV 290 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~ 290 (517)
..++.+.+|.+.|+.++|+|- |..||+|+.|+.|++|+...+..+.....+ .+|+..|.+++|+|.|++|+++|.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 356788999999999999997 999999999999999999755556665555 469999999999999999999999999
Q ss_pred EEEEECCCC--cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC---CeeEeeeCcCCCceEEEEEccCC
Q 042434 291 LKLWDVETG--ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG---NEIKAWRGTRIPKVLDLAVTPDG 365 (517)
Q Consensus 291 i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~ 365 (517)
+.||.-..+ +++.++.+|...|.|++|+++|++||++++|.. ||+|.... -........|...|..+.|+|..
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS--VWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKS--VWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe--EEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 999987644 688899999999999999999999999999999 88888763 22233344555689999999999
Q ss_pred CEEEEEeCCCcEEEEECC-Cce----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCce
Q 042434 366 ENLISVLSDKDIRILNLG-TYA----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKY 440 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~-~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 440 (517)
..|++++.|.+|++|+-. ... .....+...+-+++|++.|..|++++.|+++++|-....... .|....+
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~-----~~sr~~Y 237 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSG-----MHSRALY 237 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcch-----hcccceE
Confidence 999999999999999876 332 455567779999999999999999999999999996533111 1223333
Q ss_pred EEEeecCCCCCcEEEEecCCCcEEEEecCCC------ceeE-EecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 441 VIRSCFGGLDGTFIASGSENSQIYIWNRRNS------KPIE-ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 441 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
.+.. . ...|++++.|+.|++|....+ +++. .-..|...|++++|+|..+.+|++||+||.|++|.+.
T Consensus 238 ~v~W---~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 238 DVPW---D--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eeee---c--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 3332 2 458999999999999976542 1121 2346899999999999766899999999999999874
No 13
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.6e-39 Score=270.33 Aligned_cols=291 Identities=25% Similarity=0.387 Sum_probs=249.1
Q ss_pred ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEE
Q 042434 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLK 292 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 292 (517)
.++..+.||++.|+.+.|+|+|.+||+|+.|..|.+|++.... +-...+++|.++|..+.|.+|++.|++++.|.+++
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 4556788999999999999999999999999999999976432 34467789999999999999999999999999999
Q ss_pred EEECCCCcEEEEeCCCCCceEEEEEeCCCC-eEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434 293 LWDVETGICKHTFGDHGFIVSSCAWFPDSK-RLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV 371 (517)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 371 (517)
.||+++|++++.++.|..-|.++.-+.-|. .+.+++.|++ +.+||.+.+.......... .++++.|...+..+++|
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t--~kl~D~R~k~~~~t~~~ky-qltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGT--LKLWDIRKKEAIKTFENKY-QLTAVGFKDTSDQVISG 192 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCce--EEEEeecccchhhccccce-eEEEEEecccccceeec
Confidence 999999999999999999999998555444 5667888999 8888988654433332222 79999999999999999
Q ss_pred eCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC---CccceEEeCcccC--ceEEEe
Q 042434 372 LSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK---WEKPFKYTGHSQN--KYVIRS 444 (517)
Q Consensus 372 ~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~--~~~i~~ 444 (517)
+-|+.|++||++... ....+|..+|+.+..+|+|.++++.+.|.++++||++-. ...+..+.++... ...+ .
T Consensus 193 gIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL-~ 271 (338)
T KOG0265|consen 193 GIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL-K 271 (338)
T ss_pred cccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc-e
Confidence 999999999998877 667789999999999999999999999999999999642 2335566665542 2233 4
Q ss_pred ecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
|.|+|++.++.+|+.|..+++||......+..++||.+.|++++|+|.. .++.+++.|.+|++=+
T Consensus 272 cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e-~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 272 CSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE-PIILSCSSDKTIYLGE 336 (338)
T ss_pred eeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCC-cEEEEeccCceeEeec
Confidence 5669999999999999999999999989999999999999999999999 5999999999998643
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-40 Score=291.69 Aligned_cols=275 Identities=21% Similarity=0.258 Sum_probs=239.6
Q ss_pred ccccccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCC--CCEEEEeeCCCcEEEEEecCCCeeeE
Q 042434 184 QIDSCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNN--GEYLASSSSDCSAIIWKVLEDSKLTL 259 (517)
Q Consensus 184 q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~--~~~l~t~~~dg~i~iw~~~~~~~~~~ 259 (517)
++..|.|..+.. +.+...+....|.......+++|.||.+.|.++.|+|. +..+|||+.||++++|++.+. .+
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e---~~ 253 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE---TP 253 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC---cc
Confidence 345566665555 33344444556666667889999999999999999995 679999999999999999654 56
Q ss_pred EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEe
Q 042434 260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCD 339 (517)
Q Consensus 260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~ 339 (517)
+..+.+|...|..++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|.|||..+++|+.|.. -.+||
T Consensus 254 l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~--~RvWD 331 (459)
T KOG0272|consen 254 LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL--GRVWD 331 (459)
T ss_pred hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccch--hheee
Confidence 6889999999999999999999999999999999999999988888899999999999999999999999998 77889
Q ss_pred CCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcC-CCCEEEEEeCCCe
Q 042434 340 CDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSV-DCKNFIVNLNSQE 416 (517)
Q Consensus 340 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~ 416 (517)
+++.....+...|..+|.+++|+|+|..+++|+.|++++|||++... .....|..-|+.+.|+| .|.+|++++.|++
T Consensus 332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t 411 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT 411 (459)
T ss_pred cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc
Confidence 88655555555577899999999999999999999999999999877 56667888999999999 7888999999999
Q ss_pred EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434 417 IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN 467 (517)
Q Consensus 417 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 467 (517)
+++|...+. .+...+.||... +.++.+++|+.++++++.|.++++|.
T Consensus 412 ~kiWs~~~~-~~~ksLaGHe~k---V~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 412 VKIWSTRTW-SPLKSLAGHEGK---VISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeeecCCCc-ccchhhcCCccc---eEEEEeccCCceEEEeccCceeeecc
Confidence 999998776 899999999987 45556699999999999999999995
No 15
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.8e-39 Score=258.77 Aligned_cols=291 Identities=24% Similarity=0.381 Sum_probs=254.9
Q ss_pred CCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 042434 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA 288 (517)
Q Consensus 209 ~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 288 (517)
..|.+....+..|.++|.++.|+-+|+|.++++.|.+|++|+...+ ..++++.+|...|..++.+.|+..+++|+.|
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---~liktYsghG~EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---ALIKTYSGHGHEVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc---ceeeeecCCCceeeeccccccccccccCCCC
Confidence 4567788899999999999999999999999999999999999655 6789999999999999999999999999999
Q ss_pred CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe--eEeeeCcCCCceEEEEEccCCC
Q 042434 289 EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE--IKAWRGTRIPKVLDLAVTPDGE 366 (517)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~ 366 (517)
..+.+||+++|+..+.+.+|.+.|..+.|+.+...+++|+.|.+ +..||.+... ..+........|.++.++ +.
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s--~r~wDCRS~s~ePiQildea~D~V~Si~v~--~h 156 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSS--VRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EH 156 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccce--eEEEEcccCCCCccchhhhhcCceeEEEec--cc
Confidence 99999999999999999999999999999999999999999999 6666665432 222333333467777765 56
Q ss_pred EEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeec
Q 042434 367 NLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCF 446 (517)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 446 (517)
.+++|+.||+++.||++.+....-...++|++++|+++++..++++-|+++++.|-.++ +....+.+|....+.+.++.
T Consensus 157 eIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG-klL~sYkGhkn~eykldc~l 235 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG-KLLKSYKGHKNMEYKLDCCL 235 (307)
T ss_pred EEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchh-HHHHHhcccccceeeeeeee
Confidence 89999999999999999999888888999999999999999999999999999999888 88899999999999888877
Q ss_pred CCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCC-eeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 447 GGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMT-VNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 447 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
......+++|++||.|++||+.....+..+..|... |.+++++|... -|+++... .+..|.
T Consensus 236 -~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~-~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 236 -NQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD-DFITATGH-GDLFWY 297 (307)
T ss_pred -cccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCcc-ceeEecCC-ceecee
Confidence 566789999999999999999999999999988877 89999999985 44454433 345553
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.5e-38 Score=299.77 Aligned_cols=286 Identities=20% Similarity=0.315 Sum_probs=240.8
Q ss_pred cCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC----------------------------eeeE
Q 042434 208 DQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS----------------------------KLTL 259 (517)
Q Consensus 208 ~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~----------------------------~~~~ 259 (517)
...|.-+..++..-...++|+.|++|+..||.|-.|..|++|.+...+ ....
T Consensus 364 ~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~ 443 (707)
T KOG0263|consen 364 NSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT 443 (707)
T ss_pred CCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence 455666777787777899999999999999999999999999885210 1123
Q ss_pred EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEe
Q 042434 260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCD 339 (517)
Q Consensus 260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~ 339 (517)
..++.+|.++|..+.|+|+.++|++++.|+++++|.+.+..++..+++|..+|+.+.|+|.|-+||+++.|++ -.+|.
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~t--ArLWs 521 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQT--ARLWS 521 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCce--eeeee
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999999 55555
Q ss_pred CCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeE
Q 042434 340 CDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEI 417 (517)
Q Consensus 340 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i 417 (517)
............|.+.|.|+.|+|+..++++|+.|.++++||..++. ..+.+|..+|.+++|+|+|++|++|+.||.|
T Consensus 522 ~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 522 TDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred cccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence 55433333444455689999999999999999999999999999988 6667899999999999999999999999999
Q ss_pred EEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc------------------------e
Q 042434 418 HMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK------------------------P 473 (517)
Q Consensus 418 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------------------------~ 473 (517)
.+||+.++ ..+..+.+|... +.++.|+.+|..||+|+.|.+|++||+..-. +
T Consensus 602 ~iWDl~~~-~~v~~l~~Ht~t---i~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 677 (707)
T KOG0263|consen 602 KIWDLANG-SLVKQLKGHTGT---IYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLL 677 (707)
T ss_pred EEEEcCCC-cchhhhhcccCc---eeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcce
Confidence 99999988 788888899665 4555569999999999999999999976422 3
Q ss_pred eEEecCCCCCeeEEEecCCCCcEEEEe
Q 042434 474 IEILSGHSMTVNCVSWNPKRPKMLASA 500 (517)
Q Consensus 474 ~~~~~~h~~~v~~v~~~~~~~~~l~s~ 500 (517)
+.++.....+|.++.|...+ ..|+.|
T Consensus 678 lgs~~tK~tpv~~l~FtrrN-l~L~~g 703 (707)
T KOG0263|consen 678 LGSFYTKNTPVVGLHFTRRN-LLLAVG 703 (707)
T ss_pred eeeeeecCceEEEEEEeccc-eeEEec
Confidence 44455556678888887665 445444
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-37 Score=278.84 Aligned_cols=323 Identities=23% Similarity=0.344 Sum_probs=262.1
Q ss_pred hccccccCCCCCc--cccccCCCc-ccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeE
Q 042434 183 SQIDSCQYHNSSV--AISLYEDHC-CGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTL 259 (517)
Q Consensus 183 ~q~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~ 259 (517)
..+..|.+.+... .+...+|.. ..+.-.|.+...++..|..-|+|+.|||||.++|+++.||.+.+||-.+++....
T Consensus 148 r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~ 227 (603)
T KOG0318|consen 148 RRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE 227 (603)
T ss_pred eeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE
Confidence 3455677766544 455555554 4567788888899999999999999999999999999999999999877755543
Q ss_pred EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEE-----------------------------------
Q 042434 260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT----------------------------------- 304 (517)
Q Consensus 260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------------- 304 (517)
+..-.+|.+.|.+++|+||+..+++++.|.+++|||+.+.+++++
T Consensus 228 l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~ 307 (603)
T KOG0318|consen 228 LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNP 307 (603)
T ss_pred ecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecc
Confidence 333448999999999999999999999999999999987655533
Q ss_pred --------eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC------------eeEeeeC--------------
Q 042434 305 --------FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN------------EIKAWRG-------------- 350 (517)
Q Consensus 305 --------~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~------------~~~~~~~-------------- 350 (517)
+.+|...|+++..+|++++|++|+.||. |..|+.... ++..+..
T Consensus 308 ~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~--I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~ 385 (603)
T KOG0318|consen 308 SDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH--INSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT 385 (603)
T ss_pred cCCChhheecccccceeEEEEcCCCCEEEeeccCce--EEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCe
Confidence 3468899999999999999999999999 777776421 1111100
Q ss_pred -------------------------------------------------------cCCCceEEEEEccCCCEEEEEeCCC
Q 042434 351 -------------------------------------------------------TRIPKVLDLAVTPDGENLISVLSDK 375 (517)
Q Consensus 351 -------------------------------------------------------~~~~~i~~~~~~~~~~~l~~~~~dg 375 (517)
...-...+++++|++..+++|+.|+
T Consensus 386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dg 465 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDG 465 (603)
T ss_pred EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccc
Confidence 0000234688999999999999999
Q ss_pred cEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCC
Q 042434 376 DIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG 451 (517)
Q Consensus 376 ~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 451 (517)
.|++|.+.... .....|..+++.++++||+.+|+++...+.+.+||+.+.......+.-|... |.+++|+|+.
T Consensus 466 kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak---I~~~aWsP~n 542 (603)
T KOG0318|consen 466 KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK---INCVAWSPNN 542 (603)
T ss_pred eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee---EEEEEeCCCc
Confidence 99999998754 4667889999999999999999999999999999998876655566666665 7788889999
Q ss_pred cEEEEecCCCcEEEEecCCCc-eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 452 TFIASGSENSQIYIWNRRNSK-PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 452 ~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
..+|+|+-|-.|.||+++... .+....+|...|+.+.|-.+. .+++.|.|..|++|++.
T Consensus 543 ~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~--tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 543 KLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDES--TVVSSGQDANIKVWNVT 602 (603)
T ss_pred eEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCc--eEEeccCcceeEEeccc
Confidence 999999999999999998754 344445798889999998765 69999999999999874
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.3e-37 Score=253.99 Aligned_cols=287 Identities=17% Similarity=0.298 Sum_probs=246.7
Q ss_pred cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE
Q 042434 196 AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW 275 (517)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~ 275 (517)
+.+.++..+..|....+.+.+++....+.|+.+...|+++.||+++. -.|++||+.+++. .++.++.+|+..|+++.|
T Consensus 14 vsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 14 VSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-NPVATFEGHTKNVTAVGF 91 (311)
T ss_pred EeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-CceeEEeccCCceEEEEE
Confidence 34555556667778889999999999999999999999999999876 5899999987765 478899999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCC
Q 042434 276 SPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIP 354 (517)
Q Consensus 276 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~ 354 (517)
..+|+++++||.||+++|||++...+.+.+ .|..+|+++..+|+...|++|..+|. |++||+... ...........
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~--irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGN--IRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred eecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCc--EEEEEccCCccccccCCCCCc
Confidence 999999999999999999999998877777 56799999999999999999999999 889998865 33344444445
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCce--------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 042434 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYA--------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW 426 (517)
Q Consensus 355 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 426 (517)
.|.++.+.|||.+++.+...|..++|++-+.. .....|...+..+.+||++++|++++.|.++++|+..+..
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 89999999999999999999999999987644 2344577789999999999999999999999999998765
Q ss_pred ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEec
Q 042434 427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWN 490 (517)
Q Consensus 427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~ 490 (517)
.....+.+|..- +.-|.||.||.||++|+.|+.+++||+..++.+....+|.....+++.+
T Consensus 249 kle~~l~gh~rW---vWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 249 KLELVLTGHQRW---VWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeEEEeecCCce---EEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 555666777643 4445569999999999999999999999999999999998887777754
No 19
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.7e-37 Score=266.95 Aligned_cols=288 Identities=18% Similarity=0.279 Sum_probs=239.5
Q ss_pred cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL 291 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 291 (517)
...+..|..|+++|.+++.+|+.+++|||+.|..-.+|+..++. ....+.+|...|+++.|+.||.+||+|+.+|.|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge---~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v 130 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKV 130 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc---ceeEecCCCCceEEEEEccCceEEEecCCCccE
Confidence 34577899999999999999999999999999999999997774 567889999999999999999999999999999
Q ss_pred EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEccCCCEEEE
Q 042434 292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTPDGENLIS 370 (517)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~ 370 (517)
+||+..++.....+...-..+.-+.|+|.+..|++|+.||. +|.|....+ ..+.+.+ +..++++=.|.|+|+.+++
T Consensus 131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGs--vWmw~ip~~~~~kv~~G-h~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGS--VWMWQIPSQALCKVMSG-HNSPCTCGEFIPDGKRILT 207 (399)
T ss_pred EEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCc--EEEEECCCcceeeEecC-CCCCcccccccCCCceEEE
Confidence 99999999988888767778889999999999999999999 999999874 4455555 5568999999999999999
Q ss_pred EeCCCcEEEEECCCceEEee-c----------------------------------------------------cCCCee
Q 042434 371 VLSDKDIRILNLGTYAERVI-S----------------------------------------------------EEHPIT 397 (517)
Q Consensus 371 ~~~dg~i~i~d~~~~~~~~~-~----------------------------------------------------~~~~i~ 397 (517)
+..||+|++||+.++..... . +...+.
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 99999999999988761111 0 000111
Q ss_pred EEEE---cCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCcee
Q 042434 398 SLSV---SVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI 474 (517)
Q Consensus 398 ~~~~---s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 474 (517)
++.+ +..=..+++|+-||+|.|||+... ..+..-.|..++ +...+ -+ ..+|++++.+|.|+.||.++|+++
T Consensus 288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~V--~~l~w-~~-t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAACGSVDGTIAIYDLAAS--TLRHICEHEDGV--TKLKW-LN-TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred hhhhcccccccchhhcccccceEEEEecccc--hhheeccCCCce--EEEEE-cC-cchheeeccCceEEeeeccccceE
Confidence 1222 222245788899999999999763 344444455553 33333 34 679999999999999999999999
Q ss_pred EEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 475 EILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 475 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
.++.||...|.+++.+|+. ++++|+|.|++.+||++.
T Consensus 362 ~~y~GH~~~Il~f~ls~~~-~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 362 FTYTGHQMGILDFALSPQK-RLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEecCchheeEEEEcCCC-cEEEEecCCCeEEEEecC
Confidence 9999999999999999999 799999999999999875
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.4e-37 Score=298.51 Aligned_cols=293 Identities=32% Similarity=0.460 Sum_probs=256.2
Q ss_pred EEEeccc-cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434 215 VQILTEH-KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL 293 (517)
Q Consensus 215 ~~~l~~h-~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 293 (517)
...+.+| ...|.|+.|+|+|+++++++.|+.+++|+...... .....+.+|...|.+++|+|+++++++++.|++++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 5556554 88999999999999999999999999999955432 355666899999999999999999999999999999
Q ss_pred EEC-CCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434 294 WDV-ETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL 372 (517)
Q Consensus 294 wd~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 372 (517)
||+ ..+.+++++.+|...|++++|+|+++.+++|+.|++ |++||..+.........|.+.|.+++|+++++.+++++
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~t--vriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGT--VRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCc--EEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence 999 666899999999999999999999999999999999 88888886555444445556999999999999999999
Q ss_pred CCCcEEEEECCCceE----EeeccCC--CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeec
Q 042434 373 SDKDIRILNLGTYAE----RVISEEH--PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCF 446 (517)
Q Consensus 373 ~dg~i~i~d~~~~~~----~~~~~~~--~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 446 (517)
.|+.|++||+.++.. ....+.. +++++.|+|+++++++++.|+.+++||+... .....+.+|......+....
T Consensus 308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG-KSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC-cceeeecccCCcceeEeccc
Confidence 999999999999882 2223333 5899999999999999999999999999877 77778888877655555556
Q ss_pred CCCCCcEEEEecCCCcEEEEecCCCceeEEecCC-CCCeeEEEecCCCCcEEEEee--CCCcEEEeCCC
Q 042434 447 GGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH-SMTVNCVSWNPKRPKMLASAS--DDHTIRIWGPC 512 (517)
Q Consensus 447 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~~~~~l~s~~--~dg~v~iw~~~ 512 (517)
.++.+.++++|+.|+.|++||..++..+..+.+| ...+..++|+|.. .++++++ .|+.+++|...
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~-~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTE-NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCc-CeeeecCcCCCceEEEecCC
Confidence 6889999999999999999999999999999999 8999999999998 7999998 79999999875
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=277.94 Aligned_cols=283 Identities=18% Similarity=0.340 Sum_probs=240.1
Q ss_pred ccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 042434 219 TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET 298 (517)
Q Consensus 219 ~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 298 (517)
..-+.+|..+.|.|+|+.|++|+..|.+.+|+. ..+.....+..|..+|+++.|++++.+++||+.+|.|++|+..-
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg---~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNG---TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecC---ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch
Confidence 345668999999999999999999999999986 44455556788999999999999999999999999999999754
Q ss_pred CcEEEEeCCC-CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434 299 GICKHTFGDH-GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKD 376 (517)
Q Consensus 299 ~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 376 (517)
. .++.+..| ...|++++|+|+...|++++.||+ |.+||.... +...+.++. -.|.++.|+|....+++++.|..
T Consensus 170 n-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~--ikiWdf~~~kee~vL~GHg-wdVksvdWHP~kgLiasgskDnl 245 (464)
T KOG0284|consen 170 N-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGT--IKIWDFRMPKEERVLRGHG-WDVKSVDWHPTKGLIASGSKDNL 245 (464)
T ss_pred h-hhHHhhHhhhhhhheeccCCCCceeEEecCCCe--EEEEeccCCchhheeccCC-CCcceeccCCccceeEEccCCce
Confidence 3 44455554 599999999999999999999999 666666533 233344444 58999999999999999999999
Q ss_pred EEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC-CCcE
Q 042434 377 IRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTF 453 (517)
Q Consensus 377 i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 453 (517)
|++||.+++. .....|...|..+.|+|++++|++++.|..+++||+++. +..+.+.+|.... .++.|+| ...+
T Consensus 246 VKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv---~~~~WhP~~~~l 321 (464)
T KOG0284|consen 246 VKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDV---TSLTWHPLNESL 321 (464)
T ss_pred eEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhh---eeeccccccccc
Confidence 9999999998 556678889999999999999999999999999999965 7788888888774 4444455 5678
Q ss_pred EEEecCCCcEEEEecCCCceeEEec-CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 454 IASGSENSQIYIWNRRNSKPIEILS-GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 454 l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
+.+|+.||.|..|.+...+++..+. +|...|.+++|+|-| ++|++|+.|.++++|.-..
T Consensus 322 ftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlG-hil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLG-HILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eeeccCCCceEEEeccccccccCCCcccccceeeeeccccc-eeEeecCCCcceeeeccCC
Confidence 9999999999999998667666664 799999999999999 8999999999999997643
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-36 Score=283.42 Aligned_cols=322 Identities=17% Similarity=0.294 Sum_probs=273.7
Q ss_pred hccccccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCC-CcEEEEEecCCCeeeE
Q 042434 183 SQIDSCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSD-CSAIIWKVLEDSKLTL 259 (517)
Q Consensus 183 ~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d-g~i~iw~~~~~~~~~~ 259 (517)
.+..+|.||+... +++...+-...+..+...+++.+.-...+|..++|+..|.+||.|+.. |.+-||++.+. ..
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE---sY 342 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE---SY 342 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc---ce
Confidence 6778899998877 444444444456666677888898888999999999999999998764 89999999755 44
Q ss_pred EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEe
Q 042434 260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCD 339 (517)
Q Consensus 260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~ 339 (517)
+...++|...+++++++|||+++|+|+.||.|+|||..+|-|..+|..|+..|+.+.|+..|+.+++++-||+ |..||
T Consensus 343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGt--VRAwD 420 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT--VRAWD 420 (893)
T ss_pred eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCe--EEeee
Confidence 5667899999999999999999999999999999999999999999999999999999999999999999999 77888
Q ss_pred CC-CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC-cEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCC
Q 042434 340 CD-GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK-DIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQ 415 (517)
Q Consensus 340 ~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 415 (517)
+. ....+.+..+..-...|++..|.|..+.+|+.|. .|.+|++++++ ....+|++||.+++|+|.+..+++++.|.
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 76 4556677776666788999999999999999887 69999999999 66778999999999999999999999999
Q ss_pred eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC----------------
Q 042434 416 EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG---------------- 479 (517)
Q Consensus 416 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------- 479 (517)
+|++||+-..+..+..+..... +..+.++|+|+-|++++-||.|.+||...+..+.++.+
T Consensus 501 TVRiW~if~s~~~vEtl~i~sd----vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta 576 (893)
T KOG0291|consen 501 TVRIWDIFSSSGTVETLEIRSD----VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITA 576 (893)
T ss_pred eEEEEEeeccCceeeeEeeccc----eeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeeh
Confidence 9999999665445555443322 44556699999999999999999999987765544332
Q ss_pred ----CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 480 ----HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 480 ----h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
.....+.+++++|| ..+++||..+.|.||++.++
T Consensus 577 ~~sa~~K~Ftti~ySaDG-~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 577 ENSAKGKTFTTICYSADG-KCILAGGESNSICIYDVPEG 614 (893)
T ss_pred hhcccCCceEEEEEcCCC-CEEEecCCcccEEEEECchh
Confidence 23578999999999 79999999999999999875
No 23
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.7e-36 Score=276.64 Aligned_cols=285 Identities=32% Similarity=0.506 Sum_probs=246.0
Q ss_pred EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEE
Q 042434 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 294 (517)
+.++.+|.++|++++|+|++++|++++.||.+++|++.++. ....+..|...+..+.|+|+++.+++++.||.|++|
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE---LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC---cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence 35677999999999999999999999999999999997553 446677899999999999999999999999999999
Q ss_pred ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCCCEEEEEeC
Q 042434 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDGENLISVLS 373 (517)
Q Consensus 295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 373 (517)
|+.+++....+..|...+.++.|++++.++++++.++. +.+|+... .....+. .+...+.++.|+|++.++++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~ 155 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT--IKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQ 155 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCe--EEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcC
Confidence 99998888888889999999999999888888888998 88888874 3344444 44458999999999999988888
Q ss_pred CCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCC
Q 042434 374 DKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG 451 (517)
Q Consensus 374 dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 451 (517)
++.+++||+++.+ .....+...+.++.|+|+++.+++++.++.+++||++.. .....+..+... +..+.+++++
T Consensus 156 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~---i~~~~~~~~~ 231 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENG---VNSVAFSPDG 231 (289)
T ss_pred CCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC-ceecchhhcCCc---eEEEEEcCCC
Confidence 9999999998765 344456668999999999999999999999999999765 444555455443 5566668899
Q ss_pred cEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 452 TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 452 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
.++++++.||.|++||+.+++++..+..|...|.+++|+|++ ..+++++.||.|++|+
T Consensus 232 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 232 YLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDG-KRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCC-CEEEEecCCCeEEecC
Confidence 999999889999999999999999999999999999999998 6999999999999996
No 24
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1e-35 Score=267.52 Aligned_cols=298 Identities=24% Similarity=0.421 Sum_probs=241.4
Q ss_pred cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCe-----------------------------------
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSK----------------------------------- 256 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~----------------------------------- 256 (517)
......+.+|...++-..|||.|.|+|+|...|+|||||......
T Consensus 49 ~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf 128 (603)
T KOG0318|consen 49 PASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF 128 (603)
T ss_pred ccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence 445777889999999999999999999999999999998643110
Q ss_pred ---------------------------------------------------eeEEEEeccCCCCEEEEEECCCCCeEEEE
Q 042434 257 ---------------------------------------------------LTLKHTLRSHQNPVSFVAWSPDDTKLLTC 285 (517)
Q Consensus 257 ---------------------------------------------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 285 (517)
++...++..|..-|.|+.|+|||++++++
T Consensus 129 g~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~ 208 (603)
T KOG0318|consen 129 GHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATA 208 (603)
T ss_pred eEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEe
Confidence 33445566788899999999999999999
Q ss_pred eCCCeEEEEECCCCcEEEEeC---CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-Eee-------------
Q 042434 286 GNAEVLKLWDVETGICKHTFG---DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAW------------- 348 (517)
Q Consensus 286 ~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~------------- 348 (517)
+.||++.+||-.+|+.+..+. +|++.|.+++|+||+..+++++.|.+ +.+||.....+ +.+
T Consensus 209 gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt--~KIWdVs~~slv~t~~~~~~v~dqqvG~ 286 (603)
T KOG0318|consen 209 GSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT--IKIWDVSTNSLVSTWPMGSTVEDQQVGC 286 (603)
T ss_pred cCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce--EEEEEeeccceEEEeecCCchhceEEEE
Confidence 999999999999999999997 89999999999999999999999999 45555432211 111
Q ss_pred -----------------------------eCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEE-----------
Q 042434 349 -----------------------------RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER----------- 388 (517)
Q Consensus 349 -----------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------- 388 (517)
..+|...|+++..+|++++|++|+.||.|.-||..++..-
T Consensus 287 lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 287 LWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred EEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence 1144567999999999999999999999999997543200
Q ss_pred ---------------------ee---------------------------------------------------ccCCCe
Q 042434 389 ---------------------VI---------------------------------------------------SEEHPI 396 (517)
Q Consensus 389 ---------------------~~---------------------------------------------------~~~~~i 396 (517)
.. ......
T Consensus 367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~ 446 (603)
T KOG0318|consen 367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYES 446 (603)
T ss_pred EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccccc
Confidence 00 001134
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE
Q 042434 397 TSLSVSVDCKNFIVNLNSQEIHMWDVAGKW-EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE 475 (517)
Q Consensus 397 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 475 (517)
.+++++|++..+++|+.|+.+++|.+.+.. ........|... ++.+.+|||+.|||+|...+.+.+||+.+.+...
T Consensus 447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~---iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~ 523 (603)
T KOG0318|consen 447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA---ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT 523 (603)
T ss_pred ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCC---ceEEEECCCCcEEEEeccCCcEEEEEcccCceec
Confidence 678899999999999999999999998753 223345556655 6667779999999999999999999999887632
Q ss_pred -EecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 476 -ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 476 -~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
.+.-|.+.|++++|+|+. .++||||.|-.|.||+++.+.
T Consensus 524 ~~w~FHtakI~~~aWsP~n-~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 524 NRWAFHTAKINCVAWSPNN-KLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred ceeeeeeeeEEEEEeCCCc-eEEEeccccceEEEEEccChh
Confidence 233499999999999999 799999999999999998764
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.9e-37 Score=261.95 Aligned_cols=294 Identities=20% Similarity=0.277 Sum_probs=254.4
Q ss_pred ccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe
Q 042434 207 RDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG 286 (517)
Q Consensus 207 ~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 286 (517)
.|-.|-+..+++.||.+-|.|+++.|...++++|+.|++++|||+.++ .+..++.+|-..|..+++|+-..|+++++
T Consensus 136 eWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rHpYlFs~g 212 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRHPYLFSAG 212 (460)
T ss_pred cccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccCceEEEec
Confidence 345566788899999999999999999999999999999999999877 67789999999999999999999999999
Q ss_pred CCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCC
Q 042434 287 NAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGE 366 (517)
Q Consensus 287 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 366 (517)
.|+.|+.||++..+.++.+.+|-..|.|++.+|.-..|++|+.|.. +.+||++++.......+|..+|..+.+.|-..
T Consensus 213 edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst--~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp 290 (460)
T KOG0285|consen 213 EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDST--IRVWDIRTRASVHVLSGHTNPVASVMCQPTDP 290 (460)
T ss_pred CCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcce--EEEeeecccceEEEecCCCCcceeEEeecCCC
Confidence 9999999999999999999999999999999999999999999999 88889887665555555667999999999999
Q ss_pred EEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEe
Q 042434 367 NLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS 444 (517)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~ 444 (517)
.+++|+.|++|++||++.++ .....|...+.+++.+|....+++++.|. |+-|++..+ .....+.+|... +.+
T Consensus 291 qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g-~f~~nlsgh~~i---int 365 (460)
T KOG0285|consen 291 QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG-EFLQNLSGHNAI---INT 365 (460)
T ss_pred ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCcc-chhhccccccce---eee
Confidence 99999999999999999988 66677888999999999988888887765 899999877 555557777664 444
Q ss_pred ecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-----C---CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-----G---HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~---h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
+... +..++++|+++|.+.+||.++|-..+... | ....|.+.+|...| ..|+||..|.+|++|.-.
T Consensus 366 l~~n-sD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg-~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 366 LSVN-SDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTG-SRLITGEADKTIKMYKED 439 (460)
T ss_pred eeec-cCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccC-ceEEeccCCcceEEEecc
Confidence 4433 34588999999999999999986554442 1 24678999999999 789999999999999754
No 26
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-36 Score=248.70 Aligned_cols=252 Identities=21% Similarity=0.261 Sum_probs=214.7
Q ss_pred CCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434 210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE 289 (517)
Q Consensus 210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 289 (517)
.-+.+++.++||...|..+..++||++.++++.|+++++||+.++ +....|.+|...|.+++|++|++.+++|+.|.
T Consensus 51 ~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g---~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 51 KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG---ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC---cEEEEEEecCCceEEEEecCCCceeecCCCcc
Confidence 345678999999999999999999999999999999999999876 55678999999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEeCCC--CCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCC
Q 042434 290 VLKLWDVETGICKHTFGDH--GFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG 365 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 365 (517)
+|++|++.. .+..++..+ .+.|.|+.|+|+ ..+|++++.|++ +.+||+++.++......+.+.++.++++|||
T Consensus 128 Tiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt--vKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG 204 (315)
T KOG0279|consen 128 TIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKT--VKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG 204 (315)
T ss_pred eeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCce--EEEEccCCcchhhccccccccEEEEEECCCC
Confidence 999999854 455555433 889999999998 679999999999 8899999988888877888899999999999
Q ss_pred CEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe----Cc--ccC
Q 042434 366 ENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT----GH--SQN 438 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~----~~--~~~ 438 (517)
...++|+.||.+.+||++.++ .....+...|.+++|+|+.-.|+.+. +..|+|||+.++ ..+..+. +. ...
T Consensus 205 slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~-~~v~~l~~d~~g~s~~~~ 282 (315)
T KOG0279|consen 205 SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESK-AVVEELKLDGIGPSSKAG 282 (315)
T ss_pred CEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccch-hhhhhccccccccccccC
Confidence 999999999999999999988 77888899999999999976665555 445999999876 3333322 11 112
Q ss_pred ceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 439 KYVIRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 439 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
.....+++|++||..|++|-.|+.|++|.+.
T Consensus 283 ~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 283 DPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 2334456779999999999999999999875
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.2e-36 Score=264.66 Aligned_cols=278 Identities=22% Similarity=0.363 Sum_probs=241.4
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC 301 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 301 (517)
...|++++|+.+|..||+|+.||.++||+... ....++..|.++|.++.|+.+|++|++++.|+++.+||..+|..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 36899999999999999999999999999752 34577888999999999999999999999999999999999999
Q ss_pred EEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEE
Q 042434 302 KHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILN 381 (517)
Q Consensus 302 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 381 (517)
...+..|..+-..+.|-. ...|++++.|+.+.|+..+.. .+...+.+ |.+.|.++.|+|.|.+|++++.|++++||.
T Consensus 311 ~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~-~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGED-RPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWS 387 (524)
T ss_pred EEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCC-Ccceeeec-ccCceEEEEECCCCceEEEecCCCeeEeee
Confidence 999988888878889974 557999999999545444433 45556666 557999999999999999999999999999
Q ss_pred CCCce--EEeeccCCCeeEEEEcCCC---------CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCC
Q 042434 382 LGTYA--ERVISEEHPITSLSVSVDC---------KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLD 450 (517)
Q Consensus 382 ~~~~~--~~~~~~~~~i~~~~~s~~~---------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 450 (517)
..... .....|...|..+.|+|.| ..+++++.|++|++||+..+ .++..+..|..+++. +.++|+
T Consensus 388 ~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~pVys---vafS~~ 463 (524)
T KOG0273|consen 388 MGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTLMKHQEPVYS---VAFSPN 463 (524)
T ss_pred cCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEeeccCCCceEE---EEecCC
Confidence 76655 5566788889999999965 45899999999999999887 788889889888554 455999
Q ss_pred CcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 451 GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 451 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
|+|+|+|+.||.|.+|+.++++.++.+.+ .+.|..++|+.+| ..+..+-.||.+++-|+.
T Consensus 464 g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G-~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 464 GRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAG-DKLGACASDGSVCVLDLR 523 (524)
T ss_pred CcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCC-CEEEEEecCCCceEEEec
Confidence 99999999999999999999999999985 5679999999999 788888899999998874
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.6e-35 Score=274.67 Aligned_cols=324 Identities=17% Similarity=0.278 Sum_probs=248.8
Q ss_pred ccccccCCCCCccccccCCCcccccCC---------CcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC
Q 042434 184 QIDSCQYHNSSVAISLYEDHCCGRDQI---------PTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED 254 (517)
Q Consensus 184 q~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~ 254 (517)
.+.+..|.|+...+.+.-+....++.. |....+++.||.+.|+++.|+.|.++|++||.|.++++|.+...
T Consensus 98 ~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~ 177 (893)
T KOG0291|consen 98 GVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGN 177 (893)
T ss_pred ccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccc
Confidence 344455666655444444444444433 44556788999999999999999999999999999999999755
Q ss_pred CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-----------------------CcE-----E----
Q 042434 255 SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET-----------------------GIC-----K---- 302 (517)
Q Consensus 255 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-----------------------~~~-----~---- 302 (517)
+. -....+.+|.++|.++-|..+...+++.+.||.+.+|.... ++. .
T Consensus 178 k~-~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~ 256 (893)
T KOG0291|consen 178 KN-LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKT 256 (893)
T ss_pred cc-cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEE
Confidence 44 34567899999999999999999999999999999997650 111 0
Q ss_pred --EEeCC------------------------------------------CCCceEEEEEeCCCCeEEEeeCC-CceeEEE
Q 042434 303 --HTFGD------------------------------------------HGFIVSSCAWFPDSKRLVCGSSD-TEKGIFM 337 (517)
Q Consensus 303 --~~~~~------------------------------------------~~~~v~~i~~~~~~~~l~~~~~d-~~v~i~~ 337 (517)
.-+.. ...+|..++|+..|..++.|+.. |.+-||.
T Consensus 257 ~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe 336 (893)
T KOG0291|consen 257 KKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE 336 (893)
T ss_pred EeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence 00111 12334455555555555555543 4433333
Q ss_pred EeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCC
Q 042434 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQ 415 (517)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 415 (517)
| ...........|...+.+++++|||+++++|+.||.|+|||..++- ..+..|...++.+.|+..|+.+++++-||
T Consensus 337 W--qsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDG 414 (893)
T KOG0291|consen 337 W--QSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDG 414 (893)
T ss_pred e--eccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCC
Confidence 3 3333333344566789999999999999999999999999999866 67778999999999999999999999999
Q ss_pred eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC-cEEEEecCCCceeEEecCCCCCeeEEEecCCCC
Q 042434 416 EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS-QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRP 494 (517)
Q Consensus 416 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~ 494 (517)
+|+.||+... ..-+++..... ....+++..|.|..+++|+.|. .|++|++++|+++..+.||.++|.+++|+|++
T Consensus 415 tVRAwDlkRY-rNfRTft~P~p--~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~- 490 (893)
T KOG0291|consen 415 TVRAWDLKRY-RNFRTFTSPEP--IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG- 490 (893)
T ss_pred eEEeeeeccc-ceeeeecCCCc--eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc-
Confidence 9999999654 44455554433 2345666688899999999886 79999999999999999999999999999999
Q ss_pred cEEEEeeCCCcEEEeCCCCC
Q 042434 495 KMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 495 ~~l~s~~~dg~v~iw~~~~~ 514 (517)
..|+|+|.|.+||+|++-..
T Consensus 491 ~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 491 SLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred CeEEeccccceEEEEEeecc
Confidence 79999999999999998544
No 29
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=8.4e-37 Score=249.47 Aligned_cols=289 Identities=23% Similarity=0.332 Sum_probs=248.7
Q ss_pred EEEeccccCcEEEEEECC---CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434 215 VQILTEHKNEVWFVQFSN---NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL 291 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~---~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 291 (517)
..+..||+.+|..++||| +|-+|++++.||.-.+-+-+++ ..+.++.+|.+.|++.....+...-|+++.|-+-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg---dwigtfeghkgavw~~~l~~na~~aasaaadfta 83 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG---DWIGTFEGHKGAVWSATLNKNATRAASAAADFTA 83 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC---CcEEeeeccCcceeeeecCchhhhhhhhcccchh
Confidence 346679999999999987 8999999999999887765554 6678999999999999999988889999999999
Q ss_pred EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434 292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV 371 (517)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 371 (517)
++||.-+|..++.| .|+.-|.+++|+.|.++|++|+.+..++|+..+....+...+.++. +.|..+.|....+.+++.
T Consensus 84 kvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght-g~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 84 KVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT-GGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC-CcceeEEEeccCceEEee
Confidence 99999999999999 7899999999999999999999999955555554455556666555 589999999999999999
Q ss_pred eCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCC
Q 042434 372 LSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLD 450 (517)
Q Consensus 372 ~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 450 (517)
+.|++|++||.+++. ...+....+++++.++++|+++.++ ..+.|.+||..+. ..+..+... +.+.+...+|+
T Consensus 162 add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf-~~lKs~k~P----~nV~SASL~P~ 235 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF-GLLKSYKMP----CNVESASLHPK 235 (334)
T ss_pred ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccc-cceeeccCc----cccccccccCC
Confidence 999999999999998 6777888999999999999876554 4567999998765 333333322 22666677899
Q ss_pred CcEEEEecCCCcEEEEecCCCceeEEe-cCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 451 GTFIASGSENSQIYIWNRRNSKPIEIL-SGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 451 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
..++++|++|+.++.||..+|..+..+ ++|.++|.||.|+|+| .+.++||.||+|++|....++
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecCCC
Confidence 999999999999999999999999886 8999999999999999 799999999999999987654
No 30
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.2e-35 Score=246.72 Aligned_cols=280 Identities=21% Similarity=0.274 Sum_probs=240.6
Q ss_pred HHhccccccCCCCCc-cccccCCCc-ccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC---C
Q 042434 181 VTSQIDSCQYHNSSV-AISLYEDHC-CGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED---S 255 (517)
Q Consensus 181 ~~~q~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~---~ 255 (517)
+...+....+.++.. .++.+.|.. .+|+.++...++.+.-...-|..++|+|.|+++|.|+-|....||++.+. .
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g 133 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEG 133 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccc
Confidence 444555555555555 666666665 56888999999999999999999999999999999999999999999743 2
Q ss_pred eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCcee
Q 042434 256 KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKG 334 (517)
Q Consensus 256 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~ 334 (517)
.....+.+.+|++.+.|+.|-+ ...|++++.|.++.+||+++|+.+..|.+|.+.|.+++++| +++.|++|+.|+.
T Consensus 134 ~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~-- 210 (343)
T KOG0286|consen 134 NVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS-- 210 (343)
T ss_pred cceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccc--
Confidence 3356678999999999999987 55899999999999999999999999999999999999999 9999999999999
Q ss_pred EEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeec---cCCCeeEEEEcCCCCEEEE
Q 042434 335 IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVIS---EEHPITSLSVSVDCKNFIV 410 (517)
Q Consensus 335 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---~~~~i~~~~~s~~~~~l~~ 410 (517)
.++||.+..........|.+.|+++.|.|+|.-+++|+.|++.++||++... ...+. ...+|++++||..|++|++
T Consensus 211 aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfa 290 (343)
T KOG0286|consen 211 AKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFA 290 (343)
T ss_pred eeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEe
Confidence 8999998655555555555799999999999999999999999999999876 33333 3457999999999999999
Q ss_pred EeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434 411 NLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN 467 (517)
Q Consensus 411 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 467 (517)
|..|.++.+||.-.+ ..+..+.+|... +.++..+|||.-+++|+.|..++||.
T Consensus 291 gy~d~~c~vWDtlk~-e~vg~L~GHeNR---vScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 291 GYDDFTCNVWDTLKG-ERVGVLAGHENR---VSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eecCCceeEeecccc-ceEEEeeccCCe---eEEEEECCCCcEEEecchhHheeecC
Confidence 999999999998766 777888899887 55555699999999999999999994
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-35 Score=276.71 Aligned_cols=342 Identities=18% Similarity=0.226 Sum_probs=271.5
Q ss_pred CCcchHHHHHHHHHHhccccccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCC--EEEEeeCC
Q 042434 168 VPERRLEHLVETAVTSQIDSCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGE--YLASSSSD 243 (517)
Q Consensus 168 ~~~~rl~~l~~~~~~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~--~l~t~~~d 243 (517)
+|..++.....-.++.++....+++... +.+..++....|+.....+.+.|+||.+.|.++.|+|+-. .|++|..|
T Consensus 91 L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 91 LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence 3344444444444455555566666554 4455555667788888889999999999999999999654 58999999
Q ss_pred CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE---------------------
Q 042434 244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK--------------------- 302 (517)
Q Consensus 244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--------------------- 302 (517)
+.+++||+.+... +..++..|.+.|++++|++|+..++++|.|..+.|||+.+.+..
T Consensus 171 ~~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~ 248 (775)
T KOG0319|consen 171 GTVRVWNLNDKRT--CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGG 248 (775)
T ss_pred ceEEEEEcccCch--HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCC
Confidence 9999999975543 46778889999999999999999999999999999987421100
Q ss_pred --------------------------------------------------------------------------------
Q 042434 303 -------------------------------------------------------------------------------- 302 (517)
Q Consensus 303 -------------------------------------------------------------------------------- 302 (517)
T Consensus 249 ~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~D 328 (775)
T KOG0319|consen 249 KGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILD 328 (775)
T ss_pred cceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhee
Confidence
Q ss_pred ------------------------------EEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--CeeEeeeC
Q 042434 303 ------------------------------HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRG 350 (517)
Q Consensus 303 ------------------------------~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~ 350 (517)
..+.+|+..|.++....+|.+|++|+.|.++++|.++.+. ........
T Consensus 329 m~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~ 408 (775)
T KOG0319|consen 329 MKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN 408 (775)
T ss_pred eeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc
Confidence 1123477778888855677899999999995555552221 11222334
Q ss_pred cCCCceEEEEEccCC-CEEEEEeCCCcEEEEECCCce-----------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434 351 TRIPKVLDLAVTPDG-ENLISVLSDKDIRILNLGTYA-----------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIH 418 (517)
Q Consensus 351 ~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 418 (517)
.|.+.|.+++++..+ .++++++.|+++++|++...+ .....|...|++++++|+.+.+++|+.|.+.+
T Consensus 409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaK 488 (775)
T KOG0319|consen 409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAK 488 (775)
T ss_pred ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccccee
Confidence 555689999997755 488999999999999998722 12335788999999999999999999999999
Q ss_pred EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEE
Q 042434 419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLA 498 (517)
Q Consensus 419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~ 498 (517)
+|++... .....+.||..+.+ ++.|++..+.++++|.|++|+||.+.+..++.++.||...|..+.|-.++ ..|+
T Consensus 489 iW~le~~-~l~~vLsGH~RGvw---~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~-~qli 563 (775)
T KOG0319|consen 489 IWDLEQL-RLLGVLSGHTRGVW---CVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG-KQLI 563 (775)
T ss_pred eecccCc-eEEEEeeCCccceE---EEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC-cEEE
Confidence 9999854 78889999998855 44558999999999999999999999999999999999999999999999 7999
Q ss_pred EeeCCCcEEEeCCCCCCC
Q 042434 499 SASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 499 s~~~dg~v~iw~~~~~~~ 516 (517)
|++.||.+++|++++++.
T Consensus 564 S~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 564 SAGADGLIKLWNIKTNEC 581 (775)
T ss_pred eccCCCcEEEEeccchhh
Confidence 999999999999998764
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.5e-34 Score=297.32 Aligned_cols=284 Identities=17% Similarity=0.290 Sum_probs=230.9
Q ss_pred eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC----Cee-eEEEEeccCCCCEEEEEECC-CCCeEEEEeCCCeE
Q 042434 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED----SKL-TLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAEVL 291 (517)
Q Consensus 218 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~----~~~-~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i 291 (517)
+..|.+.|++++|+|+|++||+|+.|+.|+||+.... ... .....+. +...|.+++|+| ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4459999999999999999999999999999997531 110 1122233 456899999987 47899999999999
Q ss_pred EEEECCCCcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEc-cCCCEE
Q 042434 292 KLWDVETGICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVT-PDGENL 368 (517)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~-~~~~~l 368 (517)
++||+.+++.+..+.+|...|++++|+| ++.+|++|+.|+. |.+||... ..+..+..+ ..+.++.|+ +++..+
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~--v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS--VKLWSINQGVSIGTIKTK--ANICCVQFPSESGRSL 633 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE--EEEEECCCCcEEEEEecC--CCeEEEEEeCCCCCEE
Confidence 9999999999999999999999999997 7889999999999 77788764 334444432 378899995 578999
Q ss_pred EEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC-----CccceEEeCcccCce
Q 042434 369 ISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK-----WEKPFKYTGHSQNKY 440 (517)
Q Consensus 369 ~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~~ 440 (517)
++|+.||.|++||+++.. .....|...|.++.|. ++.++++++.|+.|++||++.. ......+.+|...
T Consensus 634 atgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~-- 710 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV-- 710 (793)
T ss_pred EEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC--
Confidence 999999999999998754 3455688899999997 7789999999999999999742 2345667777654
Q ss_pred EEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEe-------------cCCCCCeeEEEecCCCCcEEEEeeCCCcEE
Q 042434 441 VIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEIL-------------SGHSMTVNCVSWNPKRPKMLASASDDHTIR 507 (517)
Q Consensus 441 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~ 507 (517)
+.++.+++++.+|++|+.||.|++|+.....++..+ ..|...|.+++|+|++ ..|++|+.||.|+
T Consensus 711 -i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~-~~lva~~~dG~I~ 788 (793)
T PLN00181 711 -KNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS-STLVAANSTGNIK 788 (793)
T ss_pred -eeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC-CeEEEecCCCcEE
Confidence 445556899999999999999999998766544322 2345679999999999 7999999999999
Q ss_pred EeCC
Q 042434 508 IWGP 511 (517)
Q Consensus 508 iw~~ 511 (517)
||++
T Consensus 789 i~~~ 792 (793)
T PLN00181 789 ILEM 792 (793)
T ss_pred EEec
Confidence 9986
No 33
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1e-34 Score=239.57 Aligned_cols=285 Identities=20% Similarity=0.234 Sum_probs=232.9
Q ss_pred EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434 217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV 296 (517)
Q Consensus 217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 296 (517)
.+.||..+++.+.|+.+|.+|.+++.|.++.||-..++ +.+.++.+|++.|+|++.+.+.+.+++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG---erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG---ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC---ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence 47899999999999999999999999999999988767 455899999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCC---ceeEEEEeCC-------CCe-eEeeeCcCCCceEEEEEccCC
Q 042434 297 ETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT---EKGIFMCDCD-------GNE-IKAWRGTRIPKVLDLAVTPDG 365 (517)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~---~v~i~~~~~~-------~~~-~~~~~~~~~~~i~~~~~~~~~ 365 (517)
++|+++..+ ....+|..+.|+++|++++.+..+. ...|.+++.+ ++. ...+..+. +.++.+.|.|-+
T Consensus 82 ~tGk~la~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-skit~a~Wg~l~ 159 (327)
T KOG0643|consen 82 ETGKQLATW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-SKITSALWGPLG 159 (327)
T ss_pred CCCcEEEEe-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-cceeeeeecccC
Confidence 999999998 5677899999999999888876542 1226666665 222 34444433 689999999999
Q ss_pred CEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEE
Q 042434 366 ENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI 442 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i 442 (517)
+.+++|..+|.|.+||++++. .....|...|+.+.++++..++++++.|.+-++||..+. ....++....+ +
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl-~v~Kty~te~P----v 234 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL-EVLKTYTTERP----V 234 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce-eeEEEeeeccc----c
Confidence 999999999999999999976 333467789999999999999999999999999999876 55555554433 6
Q ss_pred EeecCCCCCcEEEEecCCCc--------------EEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434 443 RSCFGGLDGTFIASGSENSQ--------------IYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRI 508 (517)
Q Consensus 443 ~~~~~s~~~~~l~~~~~dg~--------------i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i 508 (517)
.+.+++|-...++.|+.... -++|++-..+.+..+++|-++|++|+|+|+| +..+||+.||.||+
T Consensus 235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG-ksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG-KSYSSGGEDGYVRL 313 (327)
T ss_pred cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC-cccccCCCCceEEE
Confidence 66777887777776653221 1222222234566788999999999999999 79999999999999
Q ss_pred eCCC
Q 042434 509 WGPC 512 (517)
Q Consensus 509 w~~~ 512 (517)
..+.
T Consensus 314 h~Fd 317 (327)
T KOG0643|consen 314 HHFD 317 (327)
T ss_pred EEec
Confidence 7654
No 34
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=6.7e-34 Score=239.62 Aligned_cols=347 Identities=21% Similarity=0.322 Sum_probs=260.1
Q ss_pred hCCCCCCCCcchHHHHHHHHHHhccccccCCCCC----------ccccccC--CCcccccCCCcccEEEeccccCcEEEE
Q 042434 161 LLPPPEVVPERRLEHLVETAVTSQIDSCQYHNSS----------VAISLYE--DHCCGRDQIPTETVQILTEHKNEVWFV 228 (517)
Q Consensus 161 ~~~~~~~~~~~rl~~l~~~~~~~q~~~~~~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~~l~~h~~~v~~~ 228 (517)
..|.+...|++||.+++....+..-..-...... ..+.+.- +....-...+.-....+..|++++.+.
T Consensus 39 ~~~~~~~~PserLl~lv~~gmq~~~d~~~~~~~~S~~~~t~p~~~giDle~dadaq~~s~e~~~yEt~ylt~HK~~cR~a 118 (430)
T KOG0640|consen 39 MTPANICAPSERLLHLVAKGMQAENDGDLRAVSSSVLLITTPVTAGIDLEFDADAQGSSPEPSEYETKYLTSHKSPCRAA 118 (430)
T ss_pred cCcCCCCCCHHHHHHHHHHHhhcccCcceecccccccceeccCcCceeeeeccccccCCCCCcccceEEEeecccceeee
Confidence 3456677899999999877666543322211111 1111111 112222233444566788999999999
Q ss_pred EECCCCCEEEEeeCCCcEEEEEecC---------------CCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434 229 QFSNNGEYLASSSSDCSAIIWKVLE---------------DSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL 293 (517)
Q Consensus 229 ~~s~~~~~l~t~~~dg~i~iw~~~~---------------~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 293 (517)
+|||||.++|||+.|.+|+|.|++. ...-..++++..|.+.|+++.|+|....|++|+.|++|++
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 9999999999999999999999851 1123567899999999999999999999999999999999
Q ss_pred EECCCCcEEEEeC--CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe---eeCcCCCceEEEEEccCCCEE
Q 042434 294 WDVETGICKHTFG--DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA---WRGTRIPKVLDLAVTPDGENL 368 (517)
Q Consensus 294 wd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l 368 (517)
+|+......+.++ ....+|.++.|+|.|.++++|..-.. +.+||..+.+... ....+.+.|+++.+++.|+..
T Consensus 199 FDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~--~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lY 276 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPT--LRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLY 276 (430)
T ss_pred EecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCc--eeEEeccceeEeeecCcccccccceeEEEecCCccEE
Confidence 9997654333332 44678999999999999999999988 6666766544322 233455689999999999999
Q ss_pred EEEeCCCcEEEEECCCce-EEee---ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC---ceE
Q 042434 369 ISVLSDKDIRILNLGTYA-ERVI---SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN---KYV 441 (517)
Q Consensus 369 ~~~~~dg~i~i~d~~~~~-~~~~---~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---~~~ 441 (517)
++++.||.|++||--+.+ ...+ ..+..|.+..|..+++++++.+.|..+++|.+.++ ..+..+.|.... ...
T Consensus 277 vTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~-R~l~~YtGAg~tgrq~~r 355 (430)
T KOG0640|consen 277 VTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG-RMLKEYTGAGTTGRQKHR 355 (430)
T ss_pred EEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC-ceEEEEecCCcccchhhh
Confidence 999999999999987766 2222 23457999999999999999999999999999887 666666655221 112
Q ss_pred EEeecCCCCCcEEEEecC-CCcEEEEecCCCceeEEec-CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 442 IRSCFGGLDGTFIASGSE-NSQIYIWNRRNSKPIEILS-GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 442 i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
...++ .....|++.-.+ .+.+.-||.+++..+..+. +|.+.+..+.-+|.++ .++|||+|-.+|+|--+
T Consensus 356 tqAvF-NhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 356 TQAVF-NHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhh-cCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC-ceeeecccceeeeeeec
Confidence 22333 455566665543 4689999999987665554 7999999999999995 89999999999999654
No 35
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.8e-35 Score=275.68 Aligned_cols=248 Identities=20% Similarity=0.325 Sum_probs=219.5
Q ss_pred EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC-------------------------------cEEEEeCCC
Q 042434 260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-------------------------------ICKHTFGDH 308 (517)
Q Consensus 260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-------------------------------~~~~~~~~~ 308 (517)
..++......++|..|++|+..||.|..|..|++|.+... ...+++-+|
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 3444445677999999999999999999999999988631 112345689
Q ss_pred CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--
Q 042434 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-- 386 (517)
Q Consensus 309 ~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-- 386 (517)
.++|..+.|+|+.++|++++.|++ +.+|.+.+........+|..+|.++.|+|.|-++++++.|++.++|......
T Consensus 451 ~GPVyg~sFsPd~rfLlScSED~s--vRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl 528 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRFLLSCSEDSS--VRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL 528 (707)
T ss_pred CCceeeeeecccccceeeccCCcc--eeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch
Confidence 999999999999999999999999 7777777666555555676799999999999999999999999999988766
Q ss_pred EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEE
Q 042434 387 ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIW 466 (517)
Q Consensus 387 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 466 (517)
.....|...+.|+.|+|++.|+++|+.|.++++||+.++ ..++.|.||..+ +.++.+||+|++|++|++||.|.+|
T Consensus 529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~---V~al~~Sp~Gr~LaSg~ed~~I~iW 604 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG-NSVRIFTGHKGP---VTALAFSPCGRYLASGDEDGLIKIW 604 (707)
T ss_pred hhhcccccccceEEECCcccccccCCCCceEEEEEcCCC-cEEEEecCCCCc---eEEEEEcCCCceEeecccCCcEEEE
Confidence 566788899999999999999999999999999999988 789999999887 6667779999999999999999999
Q ss_pred ecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 467 NRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 467 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
|+.+++++..+.+|++.|.++.|+.+| .+||+||.|.+|++||+...
T Consensus 605 Dl~~~~~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 605 DLANGSLVKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EcCCCcchhhhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999999999 79999999999999998653
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-34 Score=260.73 Aligned_cols=285 Identities=18% Similarity=0.281 Sum_probs=254.5
Q ss_pred EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEE
Q 042434 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 294 (517)
.+.+..|+..|.++.|+|...+++++-.+|.|.||+.++. ..++.+.-..-+|.+..|-+..+++++|+.|..|+||
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc---eeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence 3455669999999999999999999999999999999655 6667787788999999999999999999999999999
Q ss_pred ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc-CCCEEEEEeC
Q 042434 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP-DGENLISVLS 373 (517)
Q Consensus 295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 373 (517)
+..+++.++.|..|...|.+++.+|...+++++|.|-.+++|.|+..-.+.+.+.+|. ..|.+++|+| |.+.+++++-
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~-HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE-HYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcc-eEEEEEEecCCCccceeeeec
Confidence 9999999999999999999999999999999999999988888887766666776665 5899999999 5669999999
Q ss_pred CCcEEEEECCCce--EEeeccCCCeeEEEEcCCC--CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434 374 DKDIRILNLGTYA--ERVISEEHPITSLSVSVDC--KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL 449 (517)
Q Consensus 374 dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 449 (517)
|++|++|.+.+.. ....+|...|+++.+-+-| .++++|+.|..+++||.++. ..+.++.||.+. +..++++|
T Consensus 162 DrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~N---vs~v~fhp 237 (794)
T KOG0276|consen 162 DRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNN---VSFVFFHP 237 (794)
T ss_pred cccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHHhhccccc---ceEEEecC
Confidence 9999999998876 6667899999999998844 68999999999999999988 899999999988 66777799
Q ss_pred CCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434 450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRI 508 (517)
Q Consensus 450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i 508 (517)
.-..+++|++||+++||+..+-++..++.-.-..|.+++-.+.+ ..++.|.+.|.|.+
T Consensus 238 ~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~-~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 238 ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGD-GKIAVGFDEGSVTV 295 (794)
T ss_pred CCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCC-CeEEEeccCCcEEE
Confidence 99999999999999999999999888888778899999999887 57888887776643
No 37
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.4e-33 Score=229.96 Aligned_cols=287 Identities=21% Similarity=0.353 Sum_probs=239.8
Q ss_pred EEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEE
Q 042434 216 QILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLW 294 (517)
Q Consensus 216 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iw 294 (517)
+.+.+|...|.+++|+.+|..|++|+.|+++.+|+++.. .........+|.+.|-.++|+|. ...+++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 567789999999999999999999999999999999765 33444567889999999999984 5789999999999999
Q ss_pred ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC
Q 042434 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374 (517)
Q Consensus 295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 374 (517)
|+..+++........+. .-+.|+|+|.++++++.|.. |-.+|.+...+..-.... -.+..++|+-++..++.....
T Consensus 93 d~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~--it~id~r~~~~~~~~~~~-~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDR--ITFIDARTYKIVNEEQFK-FEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred EeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCccc--EEEEEecccceeehhccc-ceeeeeeecCCCCEEEEecCC
Confidence 99999999888555444 45789999999999999998 777777765544333322 267889999888888888888
Q ss_pred CcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc
Q 042434 375 KDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT 452 (517)
Q Consensus 375 g~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 452 (517)
|.|.|......+ .....|.....++.|+|+|+++++|+.|..+.+||+... ...+.+..+. +.++.+.|+.||+
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~isRld---wpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCISRLD---WPVRTLSFSHDGR 244 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-hhheeecccc---CceEEEEeccCcc
Confidence 999999988776 555677778889999999999999999999999999765 4455555443 4588888899999
Q ss_pred EEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCC---------CcEEEeCCCC
Q 042434 453 FIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDD---------HTIRIWGPCQ 513 (517)
Q Consensus 453 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d---------g~v~iw~~~~ 513 (517)
+||+|++|..|-|=++++|..+..++ +.++-..|+|+|.. .+||-+.+| |+|++|.+.+
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~-~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKR-PLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCC-ceeeEEecCCCCccccccceeEEecCCC
Confidence 99999999999999999999999997 78999999999998 577776654 6788887654
No 38
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-34 Score=247.79 Aligned_cols=378 Identities=20% Similarity=0.275 Sum_probs=289.3
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhh
Q 042434 15 KKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCF 94 (517)
Q Consensus 15 ~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (517)
.++||.+-|..++-.|||.++...+-+|+...- ....+..-+++-.|+.+..+-+ ++
T Consensus 9 ~~~ei~~aiadl~g~n~~~es~~i~~~~~~~~~---~~~~~~g~ll~kkwtSv~rlqK--------------------ki 65 (406)
T KOG0295|consen 9 QRDEINMAIADLSGSNGYSESDRIFHKEASLAT---EMRKKDGGLLEKKWTSVDRLQK--------------------KI 65 (406)
T ss_pred chHHHHHHHHhhhccccccccceeEeecCCCcc---cccccccceeeccccccchhHH--------------------HH
Confidence 567899999999999999999999999986533 3344556677788886543322 22
Q ss_pred hHhhhcCChhHHHHHHHhhcccCCCChhHHhhhhhccccccccccccCCcchhhhHHHHHHHHHHHhCCCCCCCCcchHH
Q 042434 95 LEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVELERLLPPPEVVPERRLE 174 (517)
Q Consensus 95 ~el~~~~~~~~a~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~rl~ 174 (517)
.||.. + ++++ ..++.+-... + ..| .+..-+|+..|.
T Consensus 66 ~~Les-~-l~~~----~~el~~g~pt------------------------~---~~~-----------~~~~wipRp~l~ 101 (406)
T KOG0295|consen 66 RELES-K-LDET----GDELIAGDPT------------------------G---SKR-----------TPALWIPRPNLV 101 (406)
T ss_pred HHHHh-h-hccc----ccccccCCCC------------------------c---Ccc-----------ChhhcCCCCCch
Confidence 22221 0 0000 1111111100 0 000 000112222233
Q ss_pred HHHHHHHHhccccccCCCCCcc-cccc-CCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEec
Q 042434 175 HLVETAVTSQIDSCQYHNSSVA-ISLY-EDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL 252 (517)
Q Consensus 175 ~l~~~~~~~q~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~ 252 (517)
.-+.+ ...++....|||.... +..+ +..+..++..+++....++||.+.|..++|+..|+++|+++.|=.+.+||..
T Consensus 102 ~~l~g-~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 102 QKLAG-HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hhhhc-cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 33333 6788888889988773 3333 4456678899999999999999999999999999999999999999999996
Q ss_pred CCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc
Q 042434 253 EDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332 (517)
Q Consensus 253 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~ 332 (517)
.....++.+.+|...|.++.|-|.|.++++++.|.+|+.|++.+|-++.++.+|...|..++.+.||..+++++.|.+
T Consensus 181 --~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 181 --TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred --HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence 335667788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCCCCeeEeeeCcCCCceEEEEEccC---------------CCEEEEEeCCCcEEEEECCCce--EEeeccCCC
Q 042434 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD---------------GENLISVLSDKDIRILNLGTYA--ERVISEEHP 395 (517)
Q Consensus 333 v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~ 395 (517)
+.+|-..++..+.....+..+|.+++|.|. +.++.+++.|++|++||+.++. ....+|...
T Consensus 259 --l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnw 336 (406)
T KOG0295|consen 259 --LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNW 336 (406)
T ss_pred --EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccce
Confidence 555555554443333344457888888763 2489999999999999999998 677789999
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434 396 ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR 468 (517)
Q Consensus 396 i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 468 (517)
|..++|+|.|+|++++..|+++++||+++. .....+..|..- +.+..++.+-.++++|+-|.++++|..
T Consensus 337 Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ah~hf---vt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 337 VRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLEAHEHF---VTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccCCCcce---eEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999887 556666666553 556666778889999999999999974
No 39
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=9.2e-33 Score=242.87 Aligned_cols=281 Identities=17% Similarity=0.255 Sum_probs=235.6
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC 301 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 301 (517)
...|+++...|....+++|+.|..+.++|...+ +...++.||...|+.+.|+|+...+++++.|..|+||......+
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~---q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN---QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh---hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence 346778888888789999999999999998655 56688999999999999999999999999999999999988888
Q ss_pred EEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeC-cCCCceEEEEEccCCCEEEEEeCCCcEEE
Q 042434 302 KHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRG-TRIPKVLDLAVTPDGENLISVLSDKDIRI 379 (517)
Q Consensus 302 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 379 (517)
......|..+|+.+..+|.|.||++++.|++ ....|.+. ..+..... ...-.+++.+|+|||..+.+|..||.++|
T Consensus 296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~--w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGT--WAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred ccccccccccceeeeeccCCcEEEEecCCce--EEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 8888899999999999999999999999998 55555553 33333332 22236899999999999999999999999
Q ss_pred EECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434 380 LNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG 457 (517)
Q Consensus 380 ~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 457 (517)
||+.+.. ..+..|.++|..++|+.+|-++++++.|+.|++||++.. ....++..... ..+..+.|.+.|.+++.+
T Consensus 374 wdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl-~n~kt~~l~~~--~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 374 WDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL-KNFKTIQLDEK--KEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred EEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh-cccceeecccc--ccceeEEEcCCCCeEEee
Confidence 9998877 666779999999999999999999999999999999876 33333332221 235566668999999999
Q ss_pred cCCCcEEEEec--CCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 458 SENSQIYIWNR--RNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 458 ~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
+.|=+|++++- +++.++..+..|.+..+++.|.... .+++++|.|..++++.+
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a-q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA-QYLASTSMDAILRLYAL 505 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcccccceeeecccc-eEEeeccchhheEEeec
Confidence 88877777763 3567888888899999999999888 79999999999998865
No 40
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=7e-35 Score=254.67 Aligned_cols=299 Identities=24% Similarity=0.386 Sum_probs=252.9
Q ss_pred CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE
Q 042434 203 HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL 282 (517)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 282 (517)
..+.-+.+|......+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.+..++|+++.|.+++..+
T Consensus 156 d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 156 DHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred chhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCceE
Confidence 45667788999999999999999999999999999999999999999997543 56778888889999999999999999
Q ss_pred EEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEE
Q 042434 283 LTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAV 361 (517)
Q Consensus 283 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~ 361 (517)
++++.|+.+++|++...+...++.+|...|+++.|......+++|+.|.+ +..||+... +.+...... .+.+++.
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRt--iK~WDl~k~~C~kt~l~~S--~cnDI~~ 310 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRT--IKLWDLQKAYCSKTVLPGS--QCNDIVC 310 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccch--hhhhhhhhhheeccccccc--cccceEe
Confidence 99999999999999999999999999999999999988777999999999 888888753 333333222 4556665
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc-Cc
Q 042434 362 TPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ-NK 439 (517)
Q Consensus 362 ~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~ 439 (517)
+ ...+++|..|++|++||.++.. .......+.|+++..++++..+++++.|.++.+.|+++. .....+..... ..
T Consensus 311 ~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~a 387 (459)
T KOG0288|consen 311 S--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCA 387 (459)
T ss_pred c--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccc-cEEEEeeccccccc
Confidence 5 5578899999999999999887 556666779999999999999999999999999999886 44444432211 11
Q ss_pred eEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCC--CeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 440 YVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSM--TVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 440 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
...+.+.|||++.|+++||.||.|+||++.++++...+..... .|++++|+|.| ..+++++.++.+.+|.
T Consensus 388 sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG-~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 388 SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG-SGLLSADKQKAVTLWT 459 (459)
T ss_pred cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC-chhhcccCCcceEecC
Confidence 1244555699999999999999999999999999998886544 59999999999 6899999999999994
No 41
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=268.48 Aligned_cols=249 Identities=25% Similarity=0.461 Sum_probs=214.0
Q ss_pred cEEEec-cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC------------------------------e------
Q 042434 214 TVQILT-EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS------------------------------K------ 256 (517)
Q Consensus 214 ~~~~l~-~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~------------------------------~------ 256 (517)
..+.+. .|.+.|+++.||+||+|||+||.||.|+||.+.... .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 345566 899999999999999999999999999999886500 0
Q ss_pred ---------------------eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEE
Q 042434 257 ---------------------LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSC 315 (517)
Q Consensus 257 ---------------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 315 (517)
.+++..+.+|.+.|.++.||.+ ++|++++.|.+|++|++...+|++.| .|...|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEE
Confidence 1244567899999999999965 59999999999999999999999999 899999999
Q ss_pred EEeC-CCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEe----e
Q 042434 316 AWFP-DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERV----I 390 (517)
Q Consensus 316 ~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~ 390 (517)
+|+| |.++|++|+-||. +.+|++....+..|...+ .-|++++|.|||+..++|+.+|.+++|++...+... .
T Consensus 416 aFnPvDDryFiSGSLD~K--vRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGK--VRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred EecccCCCcEeecccccc--eEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 9999 7889999999999 888999999998888777 489999999999999999999999999998876211 1
Q ss_pred ------ccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcE
Q 042434 391 ------SEEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI 463 (517)
Q Consensus 391 ------~~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 463 (517)
.....|+.+.|.|. ...+++.+.|..|+|||.+.. ..+.++.|+......+.+.+ +.||++|+++++|..|
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n~~SQ~~Asf-s~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK-DLVHKFKGFRNTSSQISASF-SSDGKHIVSASEDSWV 570 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch-hhhhhhcccccCCcceeeeE-ccCCCEEEEeecCceE
Confidence 11337999999984 446999999999999999776 78888888887776676665 6699999999999999
Q ss_pred EEEecC
Q 042434 464 YIWNRR 469 (517)
Q Consensus 464 ~iwd~~ 469 (517)
++|+..
T Consensus 571 YiW~~~ 576 (712)
T KOG0283|consen 571 YIWKND 576 (712)
T ss_pred EEEeCC
Confidence 999974
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=252.75 Aligned_cols=244 Identities=17% Similarity=0.329 Sum_probs=221.0
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE
Q 042434 267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK 346 (517)
Q Consensus 267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~ 346 (517)
..+|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|+.+|+++.|++++.++++|+.+|. |..|+...+.++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~--iKyWqpnmnnVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGM--IKYWQPNMNNVK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCce--EEecccchhhhH
Confidence 567999999999999999999999999998554444455689999999999999999999999999 888999888888
Q ss_pred eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434 347 AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG 424 (517)
Q Consensus 347 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 424 (517)
.+..++...|++++|+|+...+++++.||+|+|||....+ ....+|.-.|.++.|+|....+++++.|+.|++||.++
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 8888887799999999999999999999999999998776 56678888999999999999999999999999999999
Q ss_pred CCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCC
Q 042434 425 KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDH 504 (517)
Q Consensus 425 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg 504 (517)
+ ..+..+.+|... +..+.|++++++|+++|.|..++++|+++.+.+.++++|...|+++.|+|-.+.+|++|+.||
T Consensus 254 g-~cl~tlh~HKnt---Vl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 254 G-SCLATLHGHKNT---VLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred c-chhhhhhhccce---EEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 8 788888888876 555566999999999999999999999999999999999999999999998889999999999
Q ss_pred cEEEeCCCCCCC
Q 042434 505 TIRIWGPCQSSE 516 (517)
Q Consensus 505 ~v~iw~~~~~~~ 516 (517)
.|..|.+...++
T Consensus 330 svvh~~v~~~~p 341 (464)
T KOG0284|consen 330 SVVHWVVGLEEP 341 (464)
T ss_pred ceEEEecccccc
Confidence 999999874443
No 43
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=240.66 Aligned_cols=250 Identities=22% Similarity=0.304 Sum_probs=226.4
Q ss_pred eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEE
Q 042434 257 LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF 336 (517)
Q Consensus 257 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~ 336 (517)
++..+.+.+|.+.|.|+++.|.+.++++|+.|++++|||+.+|+...++.+|...|..+++++-..++++++.|+. |.
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~--VK 218 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ--VK 218 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCe--eE
Confidence 4566778999999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred EEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCC
Q 042434 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNS 414 (517)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d 414 (517)
.||+..+.+..-..+|.+.|.+++.+|.-..+++|+.|.++++||+++.. ....+|..+|.++.+.|-...+++|+.|
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 89998766655555666799999999999999999999999999999987 5666799999999999988999999999
Q ss_pred CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCC
Q 042434 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRP 494 (517)
Q Consensus 415 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~ 494 (517)
++|++||++.+ .....+..|... +++++.+|....+|+++.|. |+-|++..|..+..+.+|.+.|++++.+.|+
T Consensus 299 ~tvrlWDl~ag-kt~~tlt~hkks---vral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 299 STVRLWDLRAG-KTMITLTHHKKS---VRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred ceEEEeeeccC-ceeEeeecccce---eeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-
Confidence 99999999887 555666666654 77777799999999999885 9999999999999999999999999999998
Q ss_pred cEEEEeeCCCcEEEeCCCCCC
Q 042434 495 KMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 495 ~~l~s~~~dg~v~iw~~~~~~ 515 (517)
++++|++.|.+..||.++|-
T Consensus 373 -v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 373 -VLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred -eEEEcCCceEEEEEecCcCc
Confidence 79999999999999998763
No 44
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=258.22 Aligned_cols=287 Identities=21% Similarity=0.306 Sum_probs=249.4
Q ss_pred EEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434 216 QILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD 295 (517)
Q Consensus 216 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 295 (517)
..+.||...|.++++|.+...+++|+. +.+++|+..+. +.++++. .+.+.+..|.|.++++++|...|.+.++|
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~---kciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTL---KCIRTIT--CGYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCc---ceeEEec--cccEEEEEecCCCceEEEeccCCceEEEE
Confidence 467799999999999999988888764 68999999655 5556665 34899999999999999999999999999
Q ss_pred CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC----CCeeEeeeCc------CCCceEEEEEccCC
Q 042434 296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD----GNEIKAWRGT------RIPKVLDLAVTPDG 365 (517)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~----~~~~~~~~~~------~~~~i~~~~~~~~~ 365 (517)
+.+...+.+.+.|.+.|++++.+||+..+++||.|.+|++|.+... +.+.+.+... -...|.|+.+||||
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG 520 (888)
T ss_pred eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC
Confidence 9999999999999999999999999999999999999666654432 2111111111 12479999999999
Q ss_pred CEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEE
Q 042434 366 ENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIR 443 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~ 443 (517)
++++++--|.+++||-+.+.+ ....+|.-||.++.++||++.+++|+.|.+|++|-+.-+ .....+.+|... +.
T Consensus 521 k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fAHdDS---vm 596 (888)
T KOG0306|consen 521 KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFAHDDS---VM 596 (888)
T ss_pred cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhcccCc---ee
Confidence 999999999999999999988 778899999999999999999999999999999999877 777888888877 44
Q ss_pred eecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 444 SCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 444 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
++.|-|+...++++|.|+.|+-||-...+.+..+.+|...|++++.+|+| .+++|+|.|.+||+|....
T Consensus 597 ~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G-~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 597 SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNG-SFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCC-CeEEeccCCceeEeeeccC
Confidence 44456899999999999999999999999999999999999999999999 7999999999999998654
No 45
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-32 Score=255.26 Aligned_cols=320 Identities=21% Similarity=0.319 Sum_probs=257.5
Q ss_pred cccccCC-CCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEE
Q 042434 185 IDSCQYH-NSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKH 261 (517)
Q Consensus 185 ~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~ 261 (517)
...|... ++.. +++..++....++........++.||+.+|+++.|...|..||+||.|+.|.+||+-.. .-..
T Consensus 67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E---~Gl~ 143 (888)
T KOG0306|consen 67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE---EGLF 143 (888)
T ss_pred eEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc---eeeE
Confidence 3445444 4444 67777777778888888889999999999999999999999999999999999999644 3446
Q ss_pred EeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC
Q 042434 262 TLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341 (517)
Q Consensus 262 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~ 341 (517)
.+.+|.+.|+.+-|..+.++++++|.|+.|++||+++..|..+.-.|.+.++++++.+ +.+++++.|+.+++|.....
T Consensus 144 rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~ 221 (888)
T KOG0306|consen 144 RLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFE 221 (888)
T ss_pred EeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecc
Confidence 7899999999999999889999999999999999999999999999999999999987 78889999988666654211
Q ss_pred CC-----------------------eeEee----------eC--------------------------------------
Q 042434 342 GN-----------------------EIKAW----------RG-------------------------------------- 350 (517)
Q Consensus 342 ~~-----------------------~~~~~----------~~-------------------------------------- 350 (517)
.. .+... .+
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~ 301 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED 301 (888)
T ss_pred cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence 10 00000 00
Q ss_pred --------------------------------------------------------------------------------
Q 042434 351 -------------------------------------------------------------------------------- 350 (517)
Q Consensus 351 -------------------------------------------------------------------------------- 350 (517)
T Consensus 302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence
Q ss_pred ----------------------------------------------------------------------cCCCceEEEE
Q 042434 351 ----------------------------------------------------------------------TRIPKVLDLA 360 (517)
Q Consensus 351 ----------------------------------------------------------------------~~~~~i~~~~ 360 (517)
.|.+.+.+++
T Consensus 382 S~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~ 461 (888)
T KOG0306|consen 382 SSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSIS 461 (888)
T ss_pred ecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeee
Confidence 2345666777
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCce--------------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 042434 361 VTPDGENLISVLSDKDIRILNLGTYA--------------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW 426 (517)
Q Consensus 361 ~~~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 426 (517)
.+||++.+++|+.|.+|++||..-.. .........+.++.+||||++++++--|+++++|-+.+.
T Consensus 462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl- 540 (888)
T KOG0306|consen 462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL- 540 (888)
T ss_pred ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce-
Confidence 77777778888888888888753211 133344567788888888888888888888888887765
Q ss_pred ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcE
Q 042434 427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTI 506 (517)
Q Consensus 427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v 506 (517)
+....+.||.-+ +.++-.+||++.+++||.|..|++|-+.-|.+-..+-+|.+.|.++.|.|.. +++.|||.|+.|
T Consensus 541 KFflsLYGHkLP---V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kv 616 (888)
T KOG0306|consen 541 KFFLSLYGHKLP---VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKV 616 (888)
T ss_pred eeeeeecccccc---eeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccc-eeEEEecCcceE
Confidence 555667788776 5566679999999999999999999999999999999999999999999987 899999999999
Q ss_pred EEeCCCCC
Q 042434 507 RIWGPCQS 514 (517)
Q Consensus 507 ~iw~~~~~ 514 (517)
+-||-..-
T Consensus 617 KqWDg~kF 624 (888)
T KOG0306|consen 617 KQWDGEKF 624 (888)
T ss_pred Eeechhhh
Confidence 99986543
No 46
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-31 Score=225.15 Aligned_cols=290 Identities=20% Similarity=0.315 Sum_probs=239.4
Q ss_pred ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC--CCe
Q 042434 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN--AEV 290 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--dg~ 290 (517)
++.+.+..-.+.|+++.|+++|.+|++++.|.+++|||..++. ..+++..+.-.|..++|....+.++.++. |.+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~---~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK---QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc---eeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence 3455666678999999999999999999999999999998774 44667777888999999877777777666 889
Q ss_pred EEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEE
Q 042434 291 LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLIS 370 (517)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 370 (517)
|+..++.+.+.++.|.+|...|.+++.+|-+..+++++.|++ |+.||++........... .-..++|.|.|-.+|+
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~t--vrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKT--VRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFAL 157 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCe--EEeeEecCCCCceEEecC--CCcceeECCCCcEEEE
Confidence 999999999999999999999999999999999999999999 888888743332222222 2345789999999999
Q ss_pred EeCCCcEEEEECCCce----EEee---ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEE
Q 042434 371 VLSDKDIRILNLGTYA----ERVI---SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIR 443 (517)
Q Consensus 371 ~~~dg~i~i~d~~~~~----~~~~---~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~ 443 (517)
+.....|++||++... .... ......+.+.|+|||++++.++..+.+++.|.-.+ .....+.++.......-
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G-~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG-TVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC-cEeeeEeeccCCCCcce
Confidence 9988899999998763 2222 33567899999999999999999999999999777 57777777766543334
Q ss_pred eecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 444 SCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 444 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
.+.++||++++++|+.||+|.+|++++|..+..+.+ +.+++.++.|+|.. .+++|+ +..+-+|=+..
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~-~mf~sa--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY-AMFVSA--SSNLVFWLPDE 304 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce-eeeeec--CceEEEEeccc
Confidence 455599999999999999999999999999999998 68999999999987 466555 45688887654
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.6e-34 Score=244.79 Aligned_cols=271 Identities=20% Similarity=0.295 Sum_probs=223.7
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 300 (517)
....|+|+.+ |...+++|..|.+|+|||.. .......+.||++.|.|+.|. .+.+++|+.|.+|+|||+++|+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n---~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKN---SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccc---cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc
Confidence 5678999998 44579999999999999984 446678899999999999995 6699999999999999999999
Q ss_pred EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe---eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcE
Q 042434 301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE---IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDI 377 (517)
Q Consensus 301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 377 (517)
++.++-.|...|..+.|+ ..++++++.|.+ +.+||+.... +.....+|...|+.+.|+ .+++++++.|.+|
T Consensus 269 ~l~tlihHceaVLhlrf~--ng~mvtcSkDrs--iaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTi 342 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRS--IAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI 342 (499)
T ss_pred hhhHHhhhcceeEEEEEe--CCEEEEecCCce--eEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceE
Confidence 999999999999999997 559999999999 6666765432 222333455678888885 4599999999999
Q ss_pred EEEECCCceEE--eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEE
Q 042434 378 RILNLGTYAER--VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA 455 (517)
Q Consensus 378 ~i~d~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 455 (517)
++|++.+.... ..+|...|.|+.+ .++.+++|+.|.+|++||+..+ .....+.||..-...++ -|.+.++
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLvRciR-----Fd~krIV 414 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIR-----FDNKRIV 414 (499)
T ss_pred EEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc-HHHHHHhchHHhhhhee-----ecCceee
Confidence 99999998843 3455556666554 6889999999999999999888 88888999988644443 3788999
Q ss_pred EecCCCcEEEEecCCCc---------eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 456 SGSENSQIYIWNRRNSK---------PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 456 ~~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
+|+.||+|++||+..+. ++.++..|++.|..+.|.. ..+++++.|.+|.|||+..+-
T Consensus 415 SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~---fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 415 SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE---FQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred eccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc---eEEEeccCCCeEEEEEcCCCC
Confidence 99999999999998763 3455667999999999964 469999999999999987653
No 48
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.7e-33 Score=258.12 Aligned_cols=299 Identities=15% Similarity=0.185 Sum_probs=252.2
Q ss_pred cccccCCCcccEEEeccccCcEEEEEE-CCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE
Q 042434 204 CCGRDQIPTETVQILTEHKNEVWFVQF-SNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL 282 (517)
Q Consensus 204 ~~~~~~~~~~~~~~l~~h~~~v~~~~~-s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 282 (517)
...++.-..+..+.+-|..+.|..++| .|+.++||.++..+.+++|+..+... ..+.+|+..|.+++...+|.+|
T Consensus 305 l~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----~ii~GH~e~vlSL~~~~~g~ll 380 (775)
T KOG0319|consen 305 LFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC----QIIPGHTEAVLSLDVWSSGDLL 380 (775)
T ss_pred EEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce----EEEeCchhheeeeeecccCcEE
Confidence 344555667788889999999999997 66889999999999999998764422 3788999999999966678899
Q ss_pred EEEeCCCeEEEEECCCCc----EEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCC----CeeEe-----e
Q 042434 283 LTCGNAEVLKLWDVETGI----CKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDG----NEIKA-----W 348 (517)
Q Consensus 283 ~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~----~~~~~-----~ 348 (517)
++|+.|.++++|.++++. ++....+|...|.+++++..+ .+|+++|.|++ +.+|+... ..... .
T Consensus 381 at~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~t--lK~W~l~~s~~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 381 ATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCT--LKLWDLPKSKETAFPIVLTCRYT 458 (775)
T ss_pred EEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCce--EEEecCCCcccccccceehhhHH
Confidence 999999999999885443 445567999999999997654 58899999999 55555543 11111 2
Q ss_pred eCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 042434 349 RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW 426 (517)
Q Consensus 349 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 426 (517)
...|...|++++++|+.+.+++|+.|.+.++|++.... ....+|...+.++.|+|..+.+++++.|++|+||.+.+.
T Consensus 459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f- 537 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF- 537 (775)
T ss_pred HHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-
Confidence 23455689999999999999999999999999999766 667789999999999999999999999999999999888
Q ss_pred ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcE
Q 042434 427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTI 506 (517)
Q Consensus 427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v 506 (517)
....++.||...+.. +.| -.+|..|++++.||-|++|++++++++.++.+|.+.|++++.+|.. .+++||+.||.|
T Consensus 538 SClkT~eGH~~aVlr--a~F-~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~-~~~~tgg~Dg~i 613 (775)
T KOG0319|consen 538 SCLKTFEGHTSAVLR--ASF-IRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLL-DMFVTGGGDGRI 613 (775)
T ss_pred eeeeeecCccceeEe--eee-eeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcc-ceeEecCCCeEE
Confidence 899999999886433 333 4688999999999999999999999999999999999999999999 699999999999
Q ss_pred EEeCCCC
Q 042434 507 RIWGPCQ 513 (517)
Q Consensus 507 ~iw~~~~ 513 (517)
.+|.=.+
T Consensus 614 ~~wkD~T 620 (775)
T KOG0319|consen 614 IFWKDVT 620 (775)
T ss_pred EEeecCc
Confidence 9997544
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7.9e-32 Score=233.24 Aligned_cols=291 Identities=21% Similarity=0.305 Sum_probs=235.4
Q ss_pred CCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC---CeEEEEe
Q 042434 210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD---TKLLTCG 286 (517)
Q Consensus 210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~ 286 (517)
.|+++...+. |.+-|.++... ++++++|+.||.+++||.. | +...++.+|.++|.+++|.-.+ ..+++++
T Consensus 94 ~aP~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas 166 (423)
T KOG0313|consen 94 TAPKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-G---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS 166 (423)
T ss_pred CCCCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEecC-C---ceEEEEecCCcceeeeEEEecCCccceEEEec
Confidence 3445555443 89999998887 7899999999999999975 2 4557889999999999886433 3599999
Q ss_pred CCCeEEEEECCCCcE----EEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--------------------
Q 042434 287 NAEVLKLWDVETGIC----KHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-------------------- 342 (517)
Q Consensus 287 ~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-------------------- 342 (517)
.|.++++|.++.+.. +....+|...|.++...++|..+++|+.|.++.||......
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~ 246 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKE 246 (423)
T ss_pred CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhc
Confidence 999999999887743 33345999999999999999999999999994444411110
Q ss_pred ---CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434 343 ---NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIH 418 (517)
Q Consensus 343 ---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 418 (517)
+.......+|..+|.++.|++ ...+++++.|.+|+.||+.++. ...........++..+|..+.+++|+.|..|+
T Consensus 247 ~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 247 GGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIR 325 (423)
T ss_pred ccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCcee
Confidence 001122235556899999998 7789999999999999999988 66667788999999999999999999999999
Q ss_pred EEEcCCCC--ccceEEeCcccCceEEEeecCCCC-CcEEEEecCCCcEEEEecCCCc-eeEEecCCCCCeeEEEecCCCC
Q 042434 419 MWDVAGKW--EKPFKYTGHSQNKYVIRSCFGGLD-GTFIASGSENSQIYIWNRRNSK-PIEILSGHSMTVNCVSWNPKRP 494 (517)
Q Consensus 419 ~~d~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~~~ 494 (517)
+||.+++. .....+.+|..- +..+.|+|. ...|++|+.|+++++||+++.+ ++..+.+|...|.++.|+..+
T Consensus 326 l~DPR~~~gs~v~~s~~gH~nw---Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~- 401 (423)
T KOG0313|consen 326 LWDPRTGDGSVVSQSLIGHKNW---VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG- 401 (423)
T ss_pred ecCCCCCCCceeEEeeecchhh---hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCc-
Confidence 99997653 344667788774 445555664 5678899999999999999987 999999999999999999764
Q ss_pred cEEEEeeCCCcEEEeCCCC
Q 042434 495 KMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 495 ~~l~s~~~dg~v~iw~~~~ 513 (517)
.++|||.|.+|+|+.-..
T Consensus 402 -~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 402 -LIVSGGADNKLRIFKGSP 419 (423)
T ss_pred -eEEeccCcceEEEecccc
Confidence 799999999999997653
No 50
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=260.20 Aligned_cols=281 Identities=24% Similarity=0.339 Sum_probs=229.6
Q ss_pred HhccccccCCCCCc-cccccCCC-cccccCCCcc--cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCee
Q 042434 182 TSQIDSCQYHNSSV-AISLYEDH-CCGRDQIPTE--TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKL 257 (517)
Q Consensus 182 ~~q~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~--~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~ 257 (517)
..-+..+.|+++.. ..+...+. ...+...... ..+.+.+|...|.+++|+|+|+++++|+.|++++|||+.. ..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~--~~ 236 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD--DG 236 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC--CC
Confidence 34455556666665 22332333 3334443444 6777899999999999999999999999999999999942 23
Q ss_pred eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE
Q 042434 258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337 (517)
Q Consensus 258 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~ 337 (517)
...+++.+|...|++++|+|+++.+++|+.|++|+|||++++++...+.+|...|++++|++++++|++++.|+. +.+
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~--i~v 314 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT--IRV 314 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc--EEE
Confidence 567889999999999999999999999999999999999999999999999999999999999999999999999 888
Q ss_pred EeCCCCe---eEeeeCcCCC-ceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCC---CeeEEEEcCCCCEE
Q 042434 338 CDCDGNE---IKAWRGTRIP-KVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEH---PITSLSVSVDCKNF 408 (517)
Q Consensus 338 ~~~~~~~---~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~---~i~~~~~s~~~~~l 408 (517)
||..+.. .......... .+.++.|+|++.++++++.|+.+++||+.... .....+.. .+.+...++.+.++
T Consensus 315 wd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (456)
T KOG0266|consen 315 WDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLI 394 (456)
T ss_pred EECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeE
Confidence 9998766 3455555544 69999999999999999999999999999876 33333333 34455667899999
Q ss_pred EEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec--CCCcEEEEecC
Q 042434 409 IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS--ENSQIYIWNRR 469 (517)
Q Consensus 409 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~iwd~~ 469 (517)
++++.|+.|++||+.+. .....+.+|. ...+..+.+++..+++++++ .|+.+++|...
T Consensus 395 ~sg~~d~~v~~~~~~s~-~~~~~l~~h~--~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 395 YSGSEDGSVYVWDSSSG-GILQRLEGHS--KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEeCCceEEEEeCCcc-chhhhhcCCC--CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999999886 7777888884 22355666689999999998 68899999754
No 51
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.6e-31 Score=239.90 Aligned_cols=302 Identities=18% Similarity=0.238 Sum_probs=237.8
Q ss_pred ccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC-eeeEEEEe-ccCCCCEEEEEECCCCCeEEE
Q 042434 207 RDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS-KLTLKHTL-RSHQNPVSFVAWSPDDTKLLT 284 (517)
Q Consensus 207 ~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s 284 (517)
...+|......+.+|+..|.++++.|.|..|++||.|..|++||+..-. .....+.+ ......|.++.|++.|..|++
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEE
Confidence 4567888889999999999999999999999999999999999996321 11112222 234567999999999999999
Q ss_pred EeCCCeEEEEECCCCcEEE------------EeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCC--CCeeEeee
Q 042434 285 CGNAEVLKLWDVETGICKH------------TFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCD--GNEIKAWR 349 (517)
Q Consensus 285 ~~~dg~i~iwd~~~~~~~~------------~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~--~~~~~~~~ 349 (517)
.+.....+|+|-....... .-++|...++|.+|+|+. ..|++++.||+ +.+|+.. ..+...+.
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt--lRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT--LRIWDVNNTKSQLQVIK 309 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc--EEEEecCCchhheeEEe
Confidence 9888999999964333222 225788999999999964 57999999999 5555554 33333332
Q ss_pred C----cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-----EEeeccCC--CeeEEEEcCCCCEEEEEeCCCeEE
Q 042434 350 G----TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-----ERVISEEH--PITSLSVSVDCKNFIVNLNSQEIH 418 (517)
Q Consensus 350 ~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~--~i~~~~~s~~~~~l~~~~~d~~i~ 418 (517)
. ...-.++.++|+++|+.+++|+.||.|.+|+..+.. .....|.. .|+++.||++|++|++-+.|++++
T Consensus 310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 2 222368899999999999999999999999986644 22334444 899999999999999999999999
Q ss_pred EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC------CCcEEEEecCCCceeEEecCCCCCeeEEEecCC
Q 042434 419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE------NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK 492 (517)
Q Consensus 419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~ 492 (517)
+||++...+.+....+.... +..+-|+|||+.++|++|+. .|.+++||..+...+..+.-....|..+.|+|.
T Consensus 390 vWDLrq~kkpL~~~tgL~t~-~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTP-FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK 468 (641)
T ss_pred eeeccccccchhhhcCCCcc-CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecch
Confidence 99999876776666655543 33445566999999999864 478999999999999998877889999999999
Q ss_pred CCcEEEEeeCCCcEEEe-CCC
Q 042434 493 RPKMLASASDDHTIRIW-GPC 512 (517)
Q Consensus 493 ~~~~l~s~~~dg~v~iw-~~~ 512 (517)
- +.+..|+.||+++|| |..
T Consensus 469 L-NQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 469 L-NQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred h-hheeeecCCCceEEEECcc
Confidence 8 678888889999874 443
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-31 Score=253.44 Aligned_cols=289 Identities=15% Similarity=0.244 Sum_probs=243.0
Q ss_pred EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434 217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV 296 (517)
Q Consensus 217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 296 (517)
.++..+..|..++|+|...+++++-..|.|++||..-+ .++..|..|.++|..++|+|++.+++|||.|-.|+||+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~---tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG---TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhh---hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 45567788999999999999999999999999999655 566889999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434 297 ETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKD 376 (517)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 376 (517)
.+.+|+.++.+|-..|..+.|++.-..|+++|.|.+|+||.|..+ +++.... +|...|.|..|+|....+++++-|.+
T Consensus 81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr-~~iavlt-GHnHYVMcAqFhptEDlIVSaSLDQT 158 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR-KCIAVLT-GHNHYVMCAQFHPTEDLIVSASLDQT 158 (1202)
T ss_pred ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-ceEEEEe-cCceEEEeeccCCccceEEEecccce
Confidence 999999999999999999999999999999999999666666543 3334444 44468999999999999999999999
Q ss_pred EEEEECCCce-------------------------------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 377 IRILNLGTYA-------------------------------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 377 i~i~d~~~~~-------------------------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
|+|||+...+ ...-+|...|+-++|+|.-..+++|+.|..|++|.+...
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 9999985422 112245667899999999999999999999999998542
Q ss_pred -CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCC
Q 042434 426 -WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDH 504 (517)
Q Consensus 426 -~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg 504 (517)
.=.+-+..+|..+ +.++.|+|...++++.|+|++|+|||+...+.+.++....+.-+.++-+|.. +++++ +.|+
T Consensus 239 KaWEvDtcrgH~nn---Vssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~l-NLfAA-gHDs 313 (1202)
T KOG0292|consen 239 KAWEVDTCRGHYNN---VSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPEL-NLFAA-GHDS 313 (1202)
T ss_pred cceeehhhhcccCC---cceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCc-ceeee-ecCC
Confidence 1223345677766 5666679999999999999999999999999999998778899999999998 56655 5555
Q ss_pred cEEEeCCCCCC
Q 042434 505 TIRIWGPCQSS 515 (517)
Q Consensus 505 ~v~iw~~~~~~ 515 (517)
-+.+|.+....
T Consensus 314 Gm~VFkleREr 324 (1202)
T KOG0292|consen 314 GMIVFKLERER 324 (1202)
T ss_pred ceEEEEEcccC
Confidence 57788776443
No 53
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-30 Score=248.96 Aligned_cols=315 Identities=15% Similarity=0.234 Sum_probs=249.4
Q ss_pred cccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec
Q 042434 187 SCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR 264 (517)
Q Consensus 187 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~ 264 (517)
...|||... ..++..+.+..||.--..++..+.+|.++|..++|+|++.++++|+.|..|+||+..+. +++.++.
T Consensus 14 glsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r---rclftL~ 90 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR---RCLFTLL 90 (1202)
T ss_pred ceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc---eehhhhc
Confidence 345777655 66788888888888888999999999999999999999999999999999999999544 7778999
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe
Q 042434 265 SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE 344 (517)
Q Consensus 265 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~ 344 (517)
+|-+.|..+.|++.-.+|+|+|.|.+|+||+..+++++..+.+|...|.|..|+|....++++|-|.+ |.+||..|-.
T Consensus 91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT--VRVWDisGLR 168 (1202)
T KOG0292|consen 91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT--VRVWDISGLR 168 (1202)
T ss_pred cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce--EEEEeecchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 6666664311
Q ss_pred -----------------------------eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce----EEeec
Q 042434 345 -----------------------------IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA----ERVIS 391 (517)
Q Consensus 345 -----------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~ 391 (517)
++....+|...|+-++|+|.-..+++|+.|..|++|.+...+ ....+
T Consensus 169 kk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrg 248 (1202)
T KOG0292|consen 169 KKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRG 248 (1202)
T ss_pred ccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhc
Confidence 112223455678899999999999999999999999987765 45567
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC--
Q 042434 392 EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR-- 469 (517)
Q Consensus 392 ~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~-- 469 (517)
|-..|.++-|+|....+++.+.|+.|++||+... ..+..+......-+.+ +.+|..+++++|.+.| +.||.+.
T Consensus 249 H~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrrendRFW~l---aahP~lNLfAAgHDsG-m~VFkleRE 323 (1202)
T KOG0292|consen 249 HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRRENDRFWIL---AAHPELNLFAAGHDSG-MIVFKLERE 323 (1202)
T ss_pred ccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeeccCCeEEEE---EecCCcceeeeecCCc-eEEEEEccc
Confidence 8899999999999999999999999999999776 5666665444443333 3378888888776544 3344443
Q ss_pred -------------------------CCc--eeEEecCC---CCCeeEEEecCCCCcEEEEeeCCC-cEEEeCC
Q 042434 470 -------------------------NSK--PIEILSGH---SMTVNCVSWNPKRPKMLASASDDH-TIRIWGP 511 (517)
Q Consensus 470 -------------------------~~~--~~~~~~~h---~~~v~~v~~~~~~~~~l~s~~~dg-~v~iw~~ 511 (517)
+.+ .+..++.. ..++.++.++|.....+++...|+ .--++.+
T Consensus 324 rpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~i 396 (1202)
T KOG0292|consen 324 RPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQI 396 (1202)
T ss_pred CceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEe
Confidence 211 11222221 257888999998744555444443 3334433
No 54
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-30 Score=214.40 Aligned_cols=249 Identities=24% Similarity=0.336 Sum_probs=201.5
Q ss_pred ccEEEe-ccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434 213 ETVQIL-TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL 291 (517)
Q Consensus 213 ~~~~~l-~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 291 (517)
.+..++ .+|+..|.+++|+|.|++||+||.|.++.||.-. +..++.+.++.+|.+.|.|++|+++|++||+|+.|..|
T Consensus 51 ~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~-~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSV 129 (312)
T KOG0645|consen 51 TCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE-DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSV 129 (312)
T ss_pred EEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC-CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeE
Confidence 344444 4799999999999999999999999999999875 45678899999999999999999999999999999999
Q ss_pred EEEECCCC---cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC-CCCeeEeeeCcCCCceEEEEEccCCCE
Q 042434 292 KLWDVETG---ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC-DGNEIKAWRGTRIPKVLDLAVTPDGEN 367 (517)
Q Consensus 292 ~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~ 367 (517)
.||.+..+ ++...++.|...|..+.|+|...+|++++.|++|++|.-+. ..-........+...|-+++|++.|..
T Consensus 130 WiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~r 209 (312)
T KOG0645|consen 130 WIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSR 209 (312)
T ss_pred EEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCce
Confidence 99998744 57888999999999999999999999999999976665553 223333333444458999999999999
Q ss_pred EEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ccce-----EEeCcccCceE
Q 042434 368 LISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW-EKPF-----KYTGHSQNKYV 441 (517)
Q Consensus 368 l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~~-----~~~~~~~~~~~ 441 (517)
+++++.|++++||...+. ....+..++..+.|. ...+++++.|+.|++|.-.... .+.. .-..|.. .
T Consensus 210 l~s~sdD~tv~Iw~~~~~--~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~---d 282 (312)
T KOG0645|consen 210 LVSCSDDGTVSIWRLYTD--LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV---D 282 (312)
T ss_pred EEEecCCcceEeeeeccC--cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc---c
Confidence 999999999999986532 233456678889998 5689999999999999875421 1111 1223333 4
Q ss_pred EEeecCCCC-CcEEEEecCCCcEEEEecC
Q 042434 442 IRSCFGGLD-GTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 442 i~~~~~s~~-~~~l~~~~~dg~i~iwd~~ 469 (517)
+.++.|.|. .+.|++|+.||.|++|.+.
T Consensus 283 VNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 283 VNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEEEcCCCCCceeecCCCceEEEEEec
Confidence 777777884 7899999999999999864
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-31 Score=243.27 Aligned_cols=248 Identities=20% Similarity=0.400 Sum_probs=220.9
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC
Q 042434 261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC 340 (517)
Q Consensus 261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~ 340 (517)
+++..+...|.++.|+|...+++++-.+|.|.|||.++...++.+.-...+|.+..|-+..+.+++|+.|..|+|+.++.
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999955555543
Q ss_pred CCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcC-CCCEEEEEeCCCe
Q 042434 341 DGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSV-DCKNFIVNLNSQE 416 (517)
Q Consensus 341 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~ 416 (517)
- ..+..+..|. ..|.+++.+|...++++++.|-.|++||....- ....+|.+-|.+++|.| |.+.+++++-|++
T Consensus 87 ~-ekV~~FeAH~-DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 87 G-EKVKTFEAHS-DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred c-eeeEEeeccc-cceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 2 4455555544 699999999999999999999999999998754 66778999999999999 6788999999999
Q ss_pred EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcE
Q 042434 417 IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKM 496 (517)
Q Consensus 417 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~ 496 (517)
|++|.+... .+..++.+|..++.++.... .+|..+|++|++|.+|+|||..+..++.++.||...|..+.|+|.-| +
T Consensus 165 VKVWslgs~-~~nfTl~gHekGVN~Vdyy~-~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp-i 241 (794)
T KOG0276|consen 165 VKVWSLGSP-HPNFTLEGHEKGVNCVDYYT-GGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP-I 241 (794)
T ss_pred EEEEEcCCC-CCceeeeccccCcceEEecc-CCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc-E
Confidence 999999776 88899999999877766544 55678999999999999999999999999999999999999999994 9
Q ss_pred EEEeeCCCcEEEeCCCC
Q 042434 497 LASASDDHTIRIWGPCQ 513 (517)
Q Consensus 497 l~s~~~dg~v~iw~~~~ 513 (517)
++|||.||+||||+-.+
T Consensus 242 iisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKT 258 (794)
T ss_pred EEEecCCccEEEecCcc
Confidence 99999999999999765
No 56
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.3e-31 Score=213.79 Aligned_cols=246 Identities=18% Similarity=0.282 Sum_probs=210.1
Q ss_pred EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEE
Q 042434 259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMC 338 (517)
Q Consensus 259 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~ 338 (517)
....+..|.++|.++.|+-||++.++++.|.+|++|+...|.+++++.+|...|..++.+.|+..|++|+.|.. +..|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~--v~vw 86 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKA--VQVW 86 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCce--EEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred eCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeCC
Q 042434 339 DCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLNS 414 (517)
Q Consensus 339 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d 414 (517)
|..+..+..-...|.+.|+.+.|+.+...+++|+.|.++++||.++.. +........|.++.++ +..+++|+.|
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~D 164 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVD 164 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccC
Confidence 998655544444455799999999999999999999999999999876 2222344567777665 4579999999
Q ss_pred CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCee--EEEecCC
Q 042434 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVN--CVSWNPK 492 (517)
Q Consensus 415 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~--~v~~~~~ 492 (517)
|+++.||++.+ .....+.+++ ++++.+++|++..++++.|+++++.|-.+|+++..+++|.+.-. ..+++..
T Consensus 165 GtvRtydiR~G-~l~sDy~g~p-----it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 165 GTVRTYDIRKG-TLSSDYFGHP-----ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred CcEEEEEeecc-eeehhhcCCc-----ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccc
Confidence 99999999887 4544555554 77778899999999999999999999999999999999976544 4456665
Q ss_pred CCcEEEEeeCCCcEEEeCCCCCC
Q 042434 493 RPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 493 ~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
. ..+++||.||.|++||+..+.
T Consensus 239 d-thV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 239 D-THVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred c-eeEEeccCCceEEEEEeccce
Confidence 5 689999999999999997664
No 57
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=3e-30 Score=222.44 Aligned_cols=279 Identities=17% Similarity=0.262 Sum_probs=225.6
Q ss_pred HHhccccccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeee
Q 042434 181 VTSQIDSCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLT 258 (517)
Q Consensus 181 ~~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~ 258 (517)
+.....++..+|... +.+.-+|....|+.-.+.....+.+|++.|+|+.||.+|.+||||+.+|.|+||+..++..
T Consensus 63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~-- 140 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE-- 140 (399)
T ss_pred cCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce--
Confidence 444555666666443 4445555666778888889999999999999999999999999999999999999976643
Q ss_pred EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEE
Q 042434 259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMC 338 (517)
Q Consensus 259 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~ 338 (517)
...+...-+.+.-+.|+|.+..|++|+.||.+..|.+.++...+.+.+|..++++=.|.|+|+.++++..||+ |..|
T Consensus 141 -~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt--i~~W 217 (399)
T KOG0296|consen 141 -QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT--IIVW 217 (399)
T ss_pred -EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce--EEEE
Confidence 3444445677888999999999999999999999999998888899999999999999999999999999999 7778
Q ss_pred eCCCC-eeEeeeCc--------------------------------------------------CCC---ceEEEEEccC
Q 042434 339 DCDGN-EIKAWRGT--------------------------------------------------RIP---KVLDLAVTPD 364 (517)
Q Consensus 339 ~~~~~-~~~~~~~~--------------------------------------------------~~~---~i~~~~~~~~ 364 (517)
++.+. ++...... +.. .|..+.++..
T Consensus 218 n~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~ 297 (399)
T KOG0296|consen 218 NPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSK 297 (399)
T ss_pred ecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccc
Confidence 87642 22222200 000 1112222233
Q ss_pred CCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEE
Q 042434 365 GENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIR 443 (517)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~ 443 (517)
=.+.++|+-||+|.|||+.... .....|..+|..+.|-+ ..++++++.+|.|+.||.+++ .....+.+|...+.
T Consensus 298 lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG-~l~~~y~GH~~~Il--- 372 (399)
T KOG0296|consen 298 LPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG-QLKFTYTGHQMGIL--- 372 (399)
T ss_pred cchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeecccc-ceEEEEecCchhee---
Confidence 3467888999999999999887 66778889999999999 789999999999999999999 89999999998744
Q ss_pred eecCCCCCcEEEEecCCCcEEEEecC
Q 042434 444 SCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 444 ~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
....+|++++++++|.|++.+||++.
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEEecC
Confidence 44558999999999999999999864
No 58
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=6.1e-32 Score=232.53 Aligned_cols=288 Identities=18% Similarity=0.233 Sum_probs=234.7
Q ss_pred ccEEEeccccCcEEEEEECCCC-CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434 213 ETVQILTEHKNEVWFVQFSNNG-EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL 291 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 291 (517)
..+..|.||.+.|.|++=+|+. ..+|+|+.||.|+|||+... .+..++..|.+.|..|++.. ..++++|.|.+|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCcce
Confidence 3456678999999999999976 78999999999999999543 56688999999999999986 688999999999
Q ss_pred EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcCCCceEEEEEccCCC-EEE
Q 042434 292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTRIPKVLDLAVTPDGE-NLI 369 (517)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 369 (517)
+.|.++. .+.+++ .....+..+.-+..+..+++++.+ |-+||.. ..++..+.-+. +.|.++.|+|... .|+
T Consensus 132 K~wk~~~-~p~~ti-lg~s~~~gIdh~~~~~~FaTcGe~----i~IWD~~R~~Pv~smswG~-Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 132 KQWKIDG-PPLHTI-LGKSVYLGIDHHRKNSVFATCGEQ----IDIWDEQRDNPVSSMSWGA-DSISSVKFNPVETSILA 204 (433)
T ss_pred eeeeccC-Ccceee-eccccccccccccccccccccCce----eeecccccCCccceeecCC-CceeEEecCCCcchhee
Confidence 9999864 466666 345567777777778889999887 7788876 34444444433 4799999999766 566
Q ss_pred EEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCC
Q 042434 370 SVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGG 448 (517)
Q Consensus 370 ~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s 448 (517)
+++.|+.|.+||+++.. ..........+.++|+|.+-.++++..|..++.||++....+...+.+|... +..+.+|
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA---V~dVdfs 281 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA---VMDVDFS 281 (433)
T ss_pred eeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhccccee---EEEeccC
Confidence 66799999999999987 4445556677899999988889999999999999999876777777777665 5566679
Q ss_pred CCCcEEEEecCCCcEEEEecCCCceeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 449 LDGTFIASGSENSQIYIWNRRNSKPIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 449 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
|.|+-+++||.|.+|+||.++.+.....+.. --..|.+|.|+-|. .+++|||+|+.|++|.....++
T Consensus 282 ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Ds-kyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 282 PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDS-KYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccc-cEEEecCCCcceeeeecchhhh
Confidence 9999999999999999999987765444321 12579999999998 8999999999999999775543
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.4e-30 Score=212.39 Aligned_cols=279 Identities=20% Similarity=0.323 Sum_probs=225.0
Q ss_pred EEEEECC-CCCEEEEe-------eCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEEC
Q 042434 226 WFVQFSN-NGEYLASS-------SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDV 296 (517)
Q Consensus 226 ~~~~~s~-~~~~l~t~-------~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~ 296 (517)
+++.||| -.++||.+ ...|++.|.++..+..+.....+. -.+.+..++|+++. +.+++++.||++++||.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 5788999 23334332 236889999987555555555544 46789999999864 67889999999999996
Q ss_pred CC-CcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcCCCceEEEEEccC-CCEEEEEe
Q 042434 297 ET-GICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTRIPKVLDLAVTPD-GENLISVL 372 (517)
Q Consensus 297 ~~-~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~ 372 (517)
.. ..+++.++.|...|.++.|++ ++..+++++.|++ |.+|+.. .+.+.++.+ +...|....|+|. .+.+++++
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~T--iKLW~~~r~~Sv~Tf~g-h~~~Iy~a~~sp~~~nlfas~S 167 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGT--IKLWDPNRPNSVQTFNG-HNSCIYQAAFSPHIPNLFASAS 167 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCc--eEeecCCCCcceEeecC-CccEEEEEecCCCCCCeEEEcc
Confidence 43 357888999999999999998 4667888999999 7888876 455566665 4468999999995 67899999
Q ss_pred CCCcEEEEECCCce--EEeeccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434 373 SDKDIRILNLGTYA--ERVISEEHPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL 449 (517)
Q Consensus 373 ~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 449 (517)
.|+++++||++... .....|...+.++.|+. +...+++++.|+.|+.||++.-..++..+.+|.- .++.+.+||
T Consensus 168 gd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~---AVRkvk~Sp 244 (311)
T KOG0277|consen 168 GDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGL---AVRKVKFSP 244 (311)
T ss_pred CCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCce---EEEEEecCc
Confidence 99999999998754 44556777899999998 5667888999999999999988777778877765 466666677
Q ss_pred C-CcEEEEecCCCcEEEEecCCC-ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 450 D-GTFIASGSENSQIYIWNRRNS-KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 450 ~-~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
. ...|++++.|-+++|||...+ .++.+...|+.-|..+.|++..+..+|+++.|+.++||+.
T Consensus 245 h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 245 HHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred chhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 5 468999999999999998854 4677777899999999999988889999999999999986
No 60
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.2e-29 Score=213.36 Aligned_cols=279 Identities=19% Similarity=0.317 Sum_probs=224.9
Q ss_pred EeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434 217 ILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD 295 (517)
Q Consensus 217 ~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 295 (517)
.-....+.|.+++||| ...++++||.||+||+|+++....... +....|.++|.+++|+.||..+++|+.|+.+++||
T Consensus 22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred cCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 3345678999999999 556777899999999999986544333 55677999999999999999999999999999999
Q ss_pred CCCCcEEEEeCCCCCceEEEEEeCCCC--eEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434 296 VETGICKHTFGDHGFIVSSCAWFPDSK--RLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTPDGENLISVL 372 (517)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 372 (517)
+.+++ ...+..|..+|.++.|-+... .|++||.|.+ +..||++.. ++....... .+.++.. -...++++.
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKT--lKfWD~R~~~pv~t~~LPe--RvYa~Dv--~~pm~vVat 173 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKT--LKFWDTRSSNPVATLQLPE--RVYAADV--LYPMAVVAT 173 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccc--eeecccCCCCeeeeeeccc--eeeehhc--cCceeEEEe
Confidence 99995 556679999999999998665 8999999999 899998853 334443333 4555544 345888999
Q ss_pred CCCcEEEEECCCceEEe----eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC-CccceEEeCccc------CceE
Q 042434 373 SDKDIRILNLGTYAERV----ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK-WEKPFKYTGHSQ------NKYV 441 (517)
Q Consensus 373 ~dg~i~i~d~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~------~~~~ 441 (517)
.+..|.+|+++...... ......+.+++..++....+.|+.+|.+.+..+... ....+.+..|.. .++.
T Consensus 174 a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 174 AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 99999999998765222 234456899999999999999999999999888653 244455666653 3788
Q ss_pred EEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDD 503 (517)
Q Consensus 442 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d 503 (517)
+..+.|+|.-..|++++.||++.+||-.....+.+.+.|..+|++.+|+.+|..+..+.|.|
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 99999999999999999999999999988888888889999999999999995344444544
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=2.5e-29 Score=243.07 Aligned_cols=282 Identities=20% Similarity=0.311 Sum_probs=239.5
Q ss_pred EEecc-ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEE
Q 042434 216 QILTE-HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294 (517)
Q Consensus 216 ~~l~~-h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 294 (517)
..+.+ |...+.|..|. ..++++++.|++|++|+..++ ......+.+|.+.|.++++...+.++++|+.|.++++|
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW 276 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccc--eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence 44443 67788888888 568999999999999999654 23334499999999999998878899999999999999
Q ss_pred ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC
Q 042434 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374 (517)
Q Consensus 295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 374 (517)
|..+|+|...+.+|...|.++... +..+++|+.|.+ |.+|+..+.........+.+.|.++..+ +.++++|+.|
T Consensus 277 d~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~t--VkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d 350 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNT--VKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYD 350 (537)
T ss_pred ecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCce--EEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecC
Confidence 999999999999999999998775 457888999999 7777777544444444366799999998 8899999999
Q ss_pred CcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc
Q 042434 375 KDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT 452 (517)
Q Consensus 375 g~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 452 (517)
++|++||+.+++ ....+|...|.++.+.+. ..+++|+.|+.|++||+++.......+.+|..-+..+ ...++
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l-----~~~~~ 424 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL-----LLRDN 424 (537)
T ss_pred ceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc-----ccccc
Confidence 999999999888 666779999999988776 8999999999999999988766777888887754222 34688
Q ss_pred EEEEecCCCcEEEEecCCCceeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 453 FIASGSENSQIYIWNRRNSKPIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 453 ~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
+|++++.||+|++||..+++++.++.+ |.+.|..+++. . ..+++++.||.+++||+.+++.
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~-~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--K-EEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--c-ceEEEEecCCeeEEEecccCch
Confidence 999999999999999999999999998 67999999987 2 4688999999999999998875
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=2.9e-29 Score=232.44 Aligned_cols=247 Identities=30% Similarity=0.414 Sum_probs=211.4
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC
Q 042434 261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC 340 (517)
Q Consensus 261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~ 340 (517)
.++.+|.++|.+++|+|+++++++++.||.+++|++.+++....+..|...+..+.|+|+++.+++++.+|. +.+|+.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~--i~i~~~ 80 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKT--IRLWDL 80 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCe--EEEEEc
Confidence 456789999999999999999999999999999999999888888899999999999999999999999999 778887
Q ss_pred CCC-eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeE
Q 042434 341 DGN-EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEI 417 (517)
Q Consensus 341 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i 417 (517)
... ....+. .+...+.++.|+++++.+++++.+|.+.+||+.+.. .....+...+.++.|+|++.++++++.++.+
T Consensus 81 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 81 ETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159 (289)
T ss_pred CcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence 763 344444 344579999999998888888889999999998666 3333467789999999999888888889999
Q ss_pred EEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEE
Q 042434 418 HMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKML 497 (517)
Q Consensus 418 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l 497 (517)
.+||++.. .....+..+... +..+.++|+++.+++++.||.|++||+.+++.+..+..|...+.+++|+|++ .++
T Consensus 160 ~i~d~~~~-~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~ 234 (289)
T cd00200 160 KLWDLRTG-KCVATLTGHTGE---VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG-YLL 234 (289)
T ss_pred EEEEcccc-ccceeEecCccc---cceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCC-cEE
Confidence 99999765 555556655543 5566678999999999999999999999999999998899999999999997 788
Q ss_pred EEeeCCCcEEEeCCCCCC
Q 042434 498 ASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 498 ~s~~~dg~v~iw~~~~~~ 515 (517)
++++.||.|++|++.+++
T Consensus 235 ~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 235 ASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred EEEcCCCcEEEEEcCCce
Confidence 888889999999998654
No 63
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=6.5e-30 Score=249.96 Aligned_cols=287 Identities=19% Similarity=0.291 Sum_probs=231.8
Q ss_pred cccCcEEEEEECCCCCEEEEee--CCCcEEEEEecCC--------C-eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 042434 220 EHKNEVWFVQFSNNGEYLASSS--SDCSAIIWKVLED--------S-KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA 288 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~~l~t~~--~dg~i~iw~~~~~--------~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 288 (517)
.+...|.++..+|||..+|||+ .||.++||+.+.- . -...+.+...|.+.|+|+.|+|||.+||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3455799999999999999999 8999999987421 1 123445667899999999999999999999999
Q ss_pred CeEEEEECCC------------------CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC
Q 042434 289 EVLKLWDVET------------------GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG 350 (517)
Q Consensus 289 g~i~iwd~~~------------------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~ 350 (517)
+.|.||+... -++...+.+|...|..++|+|++.++++++.|++ |.+|+..+-.......
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dns--Viiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNS--VIIWNAKTFELLKVLR 168 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccce--EEEEccccceeeeeee
Confidence 9999998762 1356778899999999999999999999999999 8888887655444444
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEee-------ccCCCeeEEEEcCCCCEEEEEeC----CCeEE
Q 042434 351 TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVI-------SEEHPITSLSVSVDCKNFIVNLN----SQEIH 418 (517)
Q Consensus 351 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~-------~~~~~i~~~~~s~~~~~l~~~~~----d~~i~ 418 (517)
.|.+.|..+.|.|-|+++++-+.|++|++|++.+.. ...+ ........+.|||||.+|++... ..++.
T Consensus 169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 555799999999999999999999999999977654 2211 12335788999999999998643 33677
Q ss_pred EEEcCCCCccceEEeCcccCceEEEeecCCC------C-------C----cEEEEecCCCcEEEEecCCCceeEEecC-C
Q 042434 419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL------D-------G----TFIASGSENSQIYIWNRRNSKPIEILSG-H 480 (517)
Q Consensus 419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~------~-------~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h 480 (517)
|.+- +.|.....+.||..+..++ .|+| . + ..+|+|+.|++|.||.....+++..... .
T Consensus 249 IieR-~tWk~~~~LvGH~~p~evv---rFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf 324 (942)
T KOG0973|consen 249 IIER-GTWKVDKDLVGHSAPVEVV---RFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF 324 (942)
T ss_pred EEec-CCceeeeeeecCCCceEEE---EeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh
Confidence 8875 5668888899999874443 3344 1 1 1688999999999999988888776642 3
Q ss_pred CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 481 SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 481 ~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
...|.+++|+||| ..|+.||.||+|.+..+..
T Consensus 325 ~~SI~DmsWspdG-~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 325 NKSIVDMSWSPDG-FSLFACSLDGTVALIHFEE 356 (942)
T ss_pred cCceeeeeEcCCC-CeEEEEecCCeEEEEEcch
Confidence 5789999999999 7899999999999998865
No 64
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=6.9e-30 Score=214.72 Aligned_cols=250 Identities=16% Similarity=0.292 Sum_probs=210.3
Q ss_pred eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC-CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEE
Q 042434 258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE-TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF 336 (517)
Q Consensus 258 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~ 336 (517)
.+...+.+|.+.|..+.|+|+|..+|+|+.|..|.+|++. .-+-...+++|.+.|..+.|.+|++.+++++.|.+ +.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~--v~ 115 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKT--VR 115 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCce--EE
Confidence 3455678999999999999999999999999999999963 33445577899999999999999999999999999 99
Q ss_pred EEeCCCCeeEeeeCcCCCceEEEEEccCCC-EEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCC
Q 042434 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNS 414 (517)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d 414 (517)
.||........-...+...+..+.-+.-|. .+.+++.|+++++||+++.. .........++++.|..++..+.+|+-|
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred EEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeecccc
Confidence 999985544433334445778777555555 56688899999999999877 6666778899999999999999999999
Q ss_pred CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC----ceeEEecCCC----CCeeE
Q 042434 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS----KPIEILSGHS----MTVNC 486 (517)
Q Consensus 415 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~----~~v~~ 486 (517)
+.|++||++.. .....+.||... |+.++.+++|.++.+-+.|.++++||++.. +++..+.+|. .....
T Consensus 196 n~ikvWd~r~~-d~~~~lsGh~Dt---It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 196 NDIKVWDLRKN-DGLYTLSGHADT---ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred CceeeeccccC-cceEEeecccCc---eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 99999999887 778889999887 556666999999999999999999998753 4577777764 34567
Q ss_pred EEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 487 VSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 487 v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
++|+|++ ..+.+|+.|..+++||....
T Consensus 272 cswsp~~-~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 272 CSWSPNG-TKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred eeccCCC-CccccccccceEEEeecccc
Confidence 8999999 78999999999999998764
No 65
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-27 Score=193.01 Aligned_cols=292 Identities=20% Similarity=0.306 Sum_probs=227.2
Q ss_pred cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC------------CeeeEEEEeccCCCCEEEEEECCCC
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED------------SKLTLKHTLRSHQNPVSFVAWSPDD 279 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~------------~~~~~~~~~~~h~~~v~~l~~s~~~ 279 (517)
...+..+. ....|.+++|+|.|.+.|.|+...+.+|-....- ......+.-+.|.+.|.|.+|+|+|
T Consensus 23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence 34455554 5778999999999999999999999998754211 0112233446789999999999999
Q ss_pred CeEEEEeCCCeEEEEECCCCcEE-----EEeCCCCCceEEEEEeCC----CCeEEEeeCCCceeEEEEeCCC-CeeEeee
Q 042434 280 TKLLTCGNAEVLKLWDVETGICK-----HTFGDHGFIVSSCAWFPD----SKRLVCGSSDTEKGIFMCDCDG-NEIKAWR 349 (517)
Q Consensus 280 ~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~i~~~~~----~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~ 349 (517)
.+|++|+.|.+|++.......+. ..+..|.+.|..++|..+ +..+++++ .|..+||.-|... .....+.
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g-agdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG-AGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC-CCcceEEEeecCCCCcceeec
Confidence 99999999999999876544332 256678999999999764 33455543 3444589888874 4444444
Q ss_pred CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE-Eee--------ccCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 042434 350 GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE-RVI--------SEEHPITSLSVSVDCKNFIVNLNSQEIHMW 420 (517)
Q Consensus 350 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~--------~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~ 420 (517)
+ +.+.|.++ ++.+|-.+++|+.|.+|++||++-... ... .....|.++++.|.|+.+++|-.|....+|
T Consensus 181 g-htghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 181 G-HTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred C-CcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 4 44566654 566788999999999999999987652 111 123578999999999999999999999999
Q ss_pred EcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC----ceeEEecCCCCCeeEEEecCCCCcE
Q 042434 421 DVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS----KPIEILSGHSMTVNCVSWNPKRPKM 496 (517)
Q Consensus 421 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~~~~~ 496 (517)
|++++ ..++.+..|... ++++.|+|...|+++++.|..|++-|+... -++.....|...+..+.|+|.. .-
T Consensus 259 dirg~-r~iq~f~phsad---ir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d-~s 333 (350)
T KOG0641|consen 259 DIRGG-RMIQRFHPHSAD---IRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQD-FS 333 (350)
T ss_pred EeeCC-ceeeeeCCCccc---eeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCcc-ce
Confidence 99988 888888888876 777888999999999999999999998632 1334445699999999999998 78
Q ss_pred EEEeeCCCcEEEeCCC
Q 042434 497 LASASDDHTIRIWGPC 512 (517)
Q Consensus 497 l~s~~~dg~v~iw~~~ 512 (517)
+++.+.|.++.+|-++
T Consensus 334 fisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 334 FISSSADKTATLWALN 349 (350)
T ss_pred eeeccCcceEEEeccC
Confidence 8999999999999875
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.6e-28 Score=256.82 Aligned_cols=264 Identities=13% Similarity=0.154 Sum_probs=208.1
Q ss_pred CCcEEEEEecCCCeeeE--EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC----c----EEEEeCCCCCce
Q 042434 243 DCSAIIWKVLEDSKLTL--KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG----I----CKHTFGDHGFIV 312 (517)
Q Consensus 243 dg~i~iw~~~~~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~----~~~~~~~~~~~v 312 (517)
+|.+++|+...-..... ...+..|.+.|.+++|+|+++++|+|+.|+.|+||+..+. . ....+ .+...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence 67788888743211111 1124458999999999999999999999999999997542 1 12233 235678
Q ss_pred EEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc-CCCEEEEEeCCCcEEEEECCCce-EEe
Q 042434 313 SSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP-DGENLISVLSDKDIRILNLGTYA-ERV 389 (517)
Q Consensus 313 ~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~ 389 (517)
.+++|++. +.+|++++.||. |.+||..+.........|.+.|.+++|+| ++.+|++|+.||.|++||++++. ...
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~--v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGV--VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCe--EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence 99999874 789999999999 88888876554444445557899999997 78899999999999999998876 333
Q ss_pred eccCCCeeEEEEc-CCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434 390 ISEEHPITSLSVS-VDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR 468 (517)
Q Consensus 390 ~~~~~~i~~~~~s-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 468 (517)
......+.++.|+ +++..+++|+.||.|++||++........+.+|..... .+.|. ++.++++++.|++|++||+
T Consensus 614 ~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~---~v~f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 614 IKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS---YVRFV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred EecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEE---EEEEe-CCCEEEEEECCCEEEEEeC
Confidence 3445678899995 57999999999999999999876445566777776643 44444 6789999999999999998
Q ss_pred CC------CceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 469 RN------SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 469 ~~------~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
.. +.++.++.+|...++.++|+|++ .+|++|+.||.|++|+...+
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCC
Confidence 74 36788999999999999999999 79999999999999997654
No 67
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.7e-29 Score=222.07 Aligned_cols=292 Identities=20% Similarity=0.252 Sum_probs=236.0
Q ss_pred EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeE--------------EEEe-ccCCCCEEEEEECCCC
Q 042434 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTL--------------KHTL-RSHQNPVSFVAWSPDD 279 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~--------------~~~~-~~h~~~v~~l~~s~~~ 279 (517)
...+..|.-+|.|++++|+.+++++++.||+|.=|++.++..... ...- ..|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 677888999999999999999999999999999999977653210 0111 3788899999999999
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEE
Q 042434 280 TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDL 359 (517)
Q Consensus 280 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~ 359 (517)
++||+|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|++ +.+|+.+..........|.+.|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drs--vkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRS--VKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCc--eEEEehhHhHHHHHHhCCccceeee
Confidence 99999999999999999999999999999999999999999999999999999 7777776544444444445689999
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe-Cccc
Q 042434 360 AVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT-GHSQ 437 (517)
Q Consensus 360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~ 437 (517)
....-++.+-+|+.|.++++|++.... .....+...+.|++|-.+ ..+++|+.+|.|.+|++... .++.... .|.-
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK-kplf~~~~AHgv 370 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK-KPLFTSRLAHGV 370 (479)
T ss_pred chhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc-CceeEeeccccc
Confidence 998888888889999999999996655 566677778999998755 68999999999999999765 3333322 2221
Q ss_pred C--------ceEEEeecCCCCCcEEEEecCCCcEEEEecCCC----ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCc
Q 042434 438 N--------KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS----KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHT 505 (517)
Q Consensus 438 ~--------~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~ 505 (517)
. ...+++++.-|...++++|+.+|.|++|-+..+ +++..++ -.+.|++++|+++|..+++..|....
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhR 449 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHR 449 (479)
T ss_pred cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccc
Confidence 1 124666666889999999999999999998877 4566665 57899999999999556666666655
Q ss_pred EEEeCC
Q 042434 506 IRIWGP 511 (517)
Q Consensus 506 v~iw~~ 511 (517)
+-=|-.
T Consensus 450 lGRW~~ 455 (479)
T KOG0299|consen 450 LGRWWC 455 (479)
T ss_pred cceeeE
Confidence 555543
No 68
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-28 Score=207.59 Aligned_cols=257 Identities=18% Similarity=0.224 Sum_probs=216.2
Q ss_pred eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC--CCceeE
Q 042434 258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS--DTEKGI 335 (517)
Q Consensus 258 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~--d~~v~i 335 (517)
++.+.+....+.|.++.|+++|..+++++.|.++++||..+++.++++..++..+..+.|......++.++. |.+ |
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t--I 82 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT--I 82 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc--e
Confidence 334555556789999999999999999999999999999999999999888889999999988888888887 555 8
Q ss_pred EEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCC
Q 042434 336 FMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQ 415 (517)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 415 (517)
...++..+.......+|...|.+++.+|-+..+++++.|++|++||++..+.....+...-..++|+|+|-.+|++...+
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCC
Confidence 88888877666666666679999999999999999999999999999987755555556667789999999999999988
Q ss_pred eEEEEEcCCCCcc-ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCe---eEEEecC
Q 042434 416 EIHMWDVAGKWEK-PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTV---NCVSWNP 491 (517)
Q Consensus 416 ~i~~~d~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v---~~v~~~~ 491 (517)
.|++||++.-..- -..+.-..........+.|||||++++.++..+.+++.|.-+|....++.++...- .+.+|+|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP 242 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC
Confidence 9999999865333 33333332334446677789999999999999999999999999999998775432 5788999
Q ss_pred CCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434 492 KRPKMLASASDDHTIRIWGPCQSSEV 517 (517)
Q Consensus 492 ~~~~~l~s~~~dg~v~iw~~~~~~~v 517 (517)
++ +++++|++||+|.+|++++|++|
T Consensus 243 ds-~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 243 DS-KFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred CC-cEEEEecCCCcEEEEEcCCCcEe
Confidence 99 79999999999999999998865
No 69
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=5.7e-31 Score=225.29 Aligned_cols=230 Identities=19% Similarity=0.348 Sum_probs=198.0
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE
Q 042434 267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK 346 (517)
Q Consensus 267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~ 346 (517)
...|.|+.+. ...+++|..|.+|+|||..+..+.+.+.+|++.|.|+.|. .+.+++|+.|.+ |.+||.++....
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsT--vrvWDv~tge~l 270 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDST--VRVWDVNTGEPL 270 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCce--EEEEeccCCchh
Confidence 5678999884 6689999999999999999999999999999999999985 669999999999 666776655444
Q ss_pred eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 042434 347 AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWD 421 (517)
Q Consensus 347 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d 421 (517)
....+|...|..+.|+. .++++++.|.++.+||+.+.. ....+|...|+.+.|+. +++++++.|.+|++|+
T Consensus 271 ~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWS 346 (499)
T ss_pred hHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEe
Confidence 44445556899998874 599999999999999998766 34557888899988864 5999999999999999
Q ss_pred cCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEee
Q 042434 422 VAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~ 501 (517)
+.+. ..+..+.+|..+ |.|+ ...|+++++|+.|.+|++||+..|.++..+.||+.-|.++.|.. ..+++|+
T Consensus 347 ~st~-efvRtl~gHkRG---IACl--QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~---krIVSGa 417 (499)
T KOG0281|consen 347 TSTC-EFVRTLNGHKRG---IACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN---KRIVSGA 417 (499)
T ss_pred ccce-eeehhhhccccc---ceeh--hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC---ceeeecc
Confidence 9888 888889999877 4444 35899999999999999999999999999999999999999974 4699999
Q ss_pred CCCcEEEeCCCCCC
Q 042434 502 DDHTIRIWGPCQSS 515 (517)
Q Consensus 502 ~dg~v~iw~~~~~~ 515 (517)
.||+|+|||+..+.
T Consensus 418 YDGkikvWdl~aal 431 (499)
T KOG0281|consen 418 YDGKIKVWDLQAAL 431 (499)
T ss_pred ccceEEEEeccccc
Confidence 99999999998754
No 70
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.8e-29 Score=230.86 Aligned_cols=271 Identities=22% Similarity=0.286 Sum_probs=221.3
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC
Q 042434 227 FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG 306 (517)
Q Consensus 227 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 306 (517)
-+.|+ ..+.||.|.. ..|++|+..++.. . .....+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.
T Consensus 182 lldWs-s~n~laValg-~~vylW~~~s~~v-~--~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALG-QSVYLWSASSGSV-T--ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred Hhhcc-cCCeEEEEec-ceEEEEecCCCce-E--EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 35677 4456777654 5799999876642 2 2223348999999999999999999999999999999999999998
Q ss_pred C-CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECC
Q 042434 307 D-HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLG 383 (517)
Q Consensus 307 ~-~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 383 (517)
. |...|.+++|. +..+.+|+.++. |..+|.+. .... ...+|...|..+.|++|+.++++|+.|+.+.|||..
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~--I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGK--ILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL 331 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCc--EEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCC
Confidence 8 99999999998 778999999999 66666553 3333 345555689999999999999999999999999996
Q ss_pred Cce--EEeeccCCCeeEEEEcC-CCCEEEEEe--CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEE--
Q 042434 384 TYA--ERVISEEHPITSLSVSV-DCKNFIVNL--NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIAS-- 456 (517)
Q Consensus 384 ~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-- 456 (517)
... .....|...|..++|+| ....||+|+ .|++|++||..++ ..+....... .|..+.|++..+-|++
T Consensus 332 ~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vdtgs----QVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 332 SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVDTGS----QVCSLIWSKKYKELLSTH 406 (484)
T ss_pred CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecccccCC----ceeeEEEcCCCCEEEEec
Confidence 655 77788999999999999 456677764 4899999999876 3333333222 3777778888866665
Q ss_pred ecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 457 GSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 457 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
|..++.|.||+..+.+++..+.+|...|..++++||| ..+++|+.|.++++|++-.
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccC
Confidence 4456789999999999999999999999999999999 7999999999999999865
No 71
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.2e-30 Score=232.92 Aligned_cols=251 Identities=19% Similarity=0.267 Sum_probs=211.2
Q ss_pred eEEEEeccCCCCEEEEEECC-CCCeEEEEeCCCeEEEEECCC-CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeE
Q 042434 258 TLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAEVLKLWDVET-GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGI 335 (517)
Q Consensus 258 ~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i 335 (517)
..+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++-. +.++++|.+|..+|..++|+++|..|++++.|+. +
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~--l 282 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF--L 282 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee--e
Confidence 45678899999999999999 889999999999999999976 8999999999999999999999999999999999 8
Q ss_pred EEEeCCCC-eeEeeeCcCCCceEEEEEccCC-CEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEE
Q 042434 336 FMCDCDGN-EIKAWRGTRIPKVLDLAVTPDG-ENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVN 411 (517)
Q Consensus 336 ~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~ 411 (517)
.+||..+. +...+.... .+.|+.|.|++ +.+++|+.|+.|+.||+++++ ...-.|...+..+.|-++|+.++++
T Consensus 283 KlwDtETG~~~~~f~~~~--~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDK--VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeccccceEEEEEecCC--CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 99999854 445555554 68999999998 789999999999999999998 4455677899999999999999999
Q ss_pred eCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC---ceeEEecCCC--CCeeE
Q 042434 412 LNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS---KPIEILSGHS--MTVNC 486 (517)
Q Consensus 412 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~--~~v~~ 486 (517)
+.|+.+++|+.+............. ..+.++..+|+++++++-+.|..|.+|.+... ..-..+.+|. +.-..
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~---hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEM---HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhh---ccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 9999999999876522222222222 22445666999999999999999999986543 2344567774 56678
Q ss_pred EEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 487 VSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 487 v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
+.||||| .+|++|+.||.+.+||.++-+.
T Consensus 438 v~fSpDG-~~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 438 VDFSPDG-RTLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred EEEcCCC-CeEEeecCCccEEEeechhhhh
Confidence 9999999 7999999999999999987543
No 72
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-28 Score=207.97 Aligned_cols=267 Identities=19% Similarity=0.268 Sum_probs=214.0
Q ss_pred EEEeeCCCcEEEEEecCCC---------eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCC
Q 042434 237 LASSSSDCSAIIWKVLEDS---------KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGD 307 (517)
Q Consensus 237 l~t~~~dg~i~iw~~~~~~---------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 307 (517)
+++|+....|.-+++.... .+.+...+..|.++|++++.+ +.++|+||.|-+|+|||+.+...+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 5667777666666553222 123456678899999999986 89999999999999999999998988889
Q ss_pred CCCceEEEEEeCCCC--eEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCc
Q 042434 308 HGFIVSSCAWFPDSK--RLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTY 385 (517)
Q Consensus 308 ~~~~v~~i~~~~~~~--~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 385 (517)
|.+.|+++.|.++-. .|++|+.||. |.+|+...-........|.+.|+.++++|.++..++.+.|+.++.||+-.+
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~--i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGH--IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCc--EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 999999999999765 8999999999 888898876665555566668999999999999999999999999999887
Q ss_pred e-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEE
Q 042434 386 A-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIY 464 (517)
Q Consensus 386 ~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 464 (517)
+ ..........+.+.|+|.|.+++++..++ |-+|.+.+. ......... .. +.++. .-++..+++|++|+.|.
T Consensus 160 r~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A-~v~~~i~~~-~r---~l~~~-~l~~~~L~vG~d~~~i~ 232 (362)
T KOG0294|consen 160 RVAFVLNLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNA-SVFREIENP-KR---ILCAT-FLDGSELLVGGDNEWIS 232 (362)
T ss_pred ccceeeccCCcceeeEEcCCCCEEEEEeccE-EEEEecccH-hHhhhhhcc-cc---ceeee-ecCCceEEEecCCceEE
Confidence 7 44444555566799999999999887654 788887653 222221111 11 11222 24688999999999999
Q ss_pred EEecCCCceeEEecCCCCCeeEEEe--cCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 465 IWNRRNSKPIEILSGHSMTVNCVSW--NPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 465 iwd~~~~~~~~~~~~h~~~v~~v~~--~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
+||..+..+...+.+|...|.++.+ .|++ .+|+|+|.||.|+|||++...
T Consensus 233 ~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 233 LKDTDSDTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred EeccCCCccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEccccc
Confidence 9999999999999999999999984 4566 799999999999999998763
No 73
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=5.4e-28 Score=233.76 Aligned_cols=269 Identities=16% Similarity=0.124 Sum_probs=202.0
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCee----------eEEEEeccCCCCEEEEEECC-CCCeEEEEeCCC
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKL----------TLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAE 289 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~----------~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg 289 (517)
|-..|.....++++..+++++.+.....|+...+... .....+.+|.+.|.+++|+| ++++|++|+.||
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4455666667777666777777777777765332110 11124678999999999999 889999999999
Q ss_pred eEEEEECCCC-------cEEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434 290 VLKLWDVETG-------ICKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV 361 (517)
Q Consensus 290 ~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 361 (517)
+|++||+.++ .++..+.+|...|.+++|+|++ ++|++++.|+. |.+||............+...|.+++|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt--VrIWDl~tg~~~~~l~~h~~~V~sla~ 176 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV--VNVWDVERGKAVEVIKCHSDQITSLEW 176 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE--EEEEECCCCeEEEEEcCCCCceEEEEE
Confidence 9999999765 3567788999999999999985 68999999999 888888755444333445568999999
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCceE--EeeccCCC-eeEEEEcCCCCEEEEEe----CCCeEEEEEcCCCCccceEEeC
Q 042434 362 TPDGENLISVLSDKDIRILNLGTYAE--RVISEEHP-ITSLSVSVDCKNFIVNL----NSQEIHMWDVAGKWEKPFKYTG 434 (517)
Q Consensus 362 ~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~-i~~~~~s~~~~~l~~~~----~d~~i~~~d~~~~~~~~~~~~~ 434 (517)
+|+|..+++++.|+.|++||++++.. ....|... ...+.|.+++..+++++ .|+.|++||++...........
T Consensus 177 spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~ 256 (493)
T PTZ00421 177 NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL 256 (493)
T ss_pred ECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc
Confidence 99999999999999999999998772 23344433 45678899888877654 4789999999875333333322
Q ss_pred cccCceEEEeecCCCCCcEEEEec-CCCcEEEEecCCCceeEEecC-CCCCeeEEEecCCC
Q 042434 435 HSQNKYVIRSCFGGLDGTFIASGS-ENSQIYIWNRRNSKPIEILSG-HSMTVNCVSWNPKR 493 (517)
Q Consensus 435 ~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~~ 493 (517)
+.. ..+...+++++++++++|+ .||.|++||+.+++++..... +..++.+++|.|..
T Consensus 257 d~~--~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 257 DQS--SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCC--CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 222 1234455689999999887 599999999999988776643 45678899998864
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.9e-29 Score=221.05 Aligned_cols=280 Identities=15% Similarity=0.186 Sum_probs=231.1
Q ss_pred ccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC
Q 042434 221 HKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG 299 (517)
Q Consensus 221 h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 299 (517)
..+.|.+++|||... -+|+.+. -.+.||+..+. ...+++......|.+++|-.||+++++|...|.|+|+|..+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~---~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTR---SVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchh---hhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 457899999999443 3444433 47899987544 344556667889999999999999999999999999998777
Q ss_pred cEEEEeCCCCCceEEEEEeCCCCe-EEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCC-EEEEEeCCCcE
Q 042434 300 ICKHTFGDHGFIVSSCAWFPDSKR-LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGE-NLISVLSDKDI 377 (517)
Q Consensus 300 ~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i 377 (517)
..++.+..|..++..+.|+|+++. +++|+.|+. +..||..+..+......|.+.|.+.+|+|-.. .+++|+.||.|
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v--~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v 178 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKV--VKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV 178 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCce--EEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence 778889999999999999997655 555666666 77888888777656666778999999999755 78999999999
Q ss_pred EEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEE
Q 042434 378 RILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA 455 (517)
Q Consensus 378 ~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 455 (517)
++||++... ...+.|+.+|..+.+-|.|..+++++ .+.+++||+.++.+.+.....|... ++|+.+..++..|+
T Consensus 179 rl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~Kt---VTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 179 RLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKT---VTCLRLASDSTRLL 254 (487)
T ss_pred EEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccce---EEEEEeecCCceEe
Confidence 999999874 77788999999999999999888876 4579999998766776666666665 55666677899999
Q ss_pred EecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 456 SGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 456 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
+|+-||.+++||+.+.+.+..+. -.++|.+++.+|++ ..++.|..||.+.+=+..
T Consensus 255 S~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd-~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDD-QTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred ecccccceEEEEccceEEEEeee-cccceeeEEecCCC-ceEEEecccceeeeehhh
Confidence 99999999999999999999887 57899999999998 789999999988776443
No 75
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=6.5e-29 Score=215.23 Aligned_cols=243 Identities=22% Similarity=0.298 Sum_probs=203.2
Q ss_pred ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC---eEEEeeCCCceeEEEEeC
Q 042434 264 RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK---RLVCGSSDTEKGIFMCDC 340 (517)
Q Consensus 264 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~---~l~~~~~d~~v~i~~~~~ 340 (517)
..|.+.|.++... +++|++|++||.+++||. .|++...+.+|.++|.+++|..... .|++++.|.++++|.|+.
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 3488889988887 779999999999999996 6889999999999999988865443 599999999998999988
Q ss_pred CCCeeEeeeC--cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCc---------------------------eEEeec
Q 042434 341 DGNEIKAWRG--TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTY---------------------------AERVIS 391 (517)
Q Consensus 341 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------------------------~~~~~~ 391 (517)
.......... +|...|.++...++|..+++|+.|..|.+|+..+. .....+
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 7655443332 66679999999999999999999999999993210 023346
Q ss_pred cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434 392 EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS 471 (517)
Q Consensus 392 ~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 471 (517)
|..+|.++.|++ ...+++++.|.+|+.||+.++ .....+.+.. .+.++..+|..++|++|+.|..|++||.+++
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg-~~~~~~~~~k----sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG-GLKSTLTTNK----SLNCISYSPLSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecc-cceeeeecCc----ceeEeecccccceeeecCCCCceeecCCCCC
Confidence 778999999998 678999999999999999887 3333333322 3666667899999999999999999999876
Q ss_pred c---eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 472 K---PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 472 ~---~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
. ...++.+|.+.|.++.|+|....+|++++.|+++++||+++.+
T Consensus 333 ~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 333 DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 4 5678889999999999999998999999999999999999866
No 76
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.3e-28 Score=206.80 Aligned_cols=294 Identities=22% Similarity=0.363 Sum_probs=220.3
Q ss_pred CCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 042434 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA 288 (517)
Q Consensus 209 ~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 288 (517)
..|.+...++.... -.|+.||+.|.+||+|+.||.|.|||+.+- ..-+.+.+|..+|++++||+||+.|+++|.|
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~---~iar~lsaH~~pi~sl~WS~dgr~LltsS~D 86 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTF---RIARMLSAHVRPITSLCWSRDGRKLLTSSRD 86 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEcccc---chhhhhhccccceeEEEecCCCCEeeeecCC
Confidence 45556666665322 789999999999999999999999999654 4567889999999999999999999999999
Q ss_pred CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC-eEEEeeCCCceeEEEEeCCCCeeEeeeCcCC----CceEEEEEcc
Q 042434 289 EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK-RLVCGSSDTEKGIFMCDCDGNEIKAWRGTRI----PKVLDLAVTP 363 (517)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~----~~i~~~~~~~ 363 (517)
..|.+||+..|.+++.+ ....+|+.+.|+|... .+++.-.+..-.+..++.. .-..+..... ....+..|.+
T Consensus 87 ~si~lwDl~~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDR 163 (405)
T ss_pred ceeEEEeccCCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccC
Confidence 99999999999999888 6778999999999543 3333333433223333321 1111111111 1122346889
Q ss_pred CCCEEEEEeCCCcEEEEECCCceE--E-eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--------cceEE
Q 042434 364 DGENLISVLSDKDIRILNLGTYAE--R-VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE--------KPFKY 432 (517)
Q Consensus 364 ~~~~l~~~~~dg~i~i~d~~~~~~--~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--------~~~~~ 432 (517)
.|+++++|...|.+.++|..+.+. . .......|..+.++..|+.++..+.|..|+.|+++.-.. ...++
T Consensus 164 ~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~ 243 (405)
T KOG1273|consen 164 RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKL 243 (405)
T ss_pred CCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHH
Confidence 999999999999999999998771 1 222246788999999999999999999999999863111 11111
Q ss_pred eCcccCceEEEeecCCCCCcEEEEecCC-CcEEEEecCCCceeEEecCCC-CCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 433 TGHSQNKYVIRSCFGGLDGTFIASGSEN-SQIYIWNRRNSKPIEILSGHS-MTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 433 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
.... +......|+|+.+|.|+++|+.. ..++||....|.+++.+.|.. ....++.|+|-.+ .+++. ..|.|+||.
T Consensus 244 qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp-~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 244 QDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRP-IIASI-ASGVVYIWA 320 (405)
T ss_pred HHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccccee-eeeec-cCCceEEEE
Confidence 1111 22335567778999999988754 579999999999999999887 5678999999984 66666 789999998
Q ss_pred CCC
Q 042434 511 PCQ 513 (517)
Q Consensus 511 ~~~ 513 (517)
...
T Consensus 321 ~~~ 323 (405)
T KOG1273|consen 321 VVQ 323 (405)
T ss_pred eec
Confidence 754
No 77
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3e-28 Score=206.29 Aligned_cols=293 Identities=18% Similarity=0.327 Sum_probs=241.4
Q ss_pred cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL 291 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 291 (517)
...++.+.||++.|+.++.......+.+++.|.+.+||.++++ .++.++.+|.+.|.++.|++.+.++++++.|++.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg---~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG---ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc---cceeeecccccceeeEEeccccceEEEccCCcch
Confidence 4567789999999999999888889999999999999999877 5668899999999999999999999999999999
Q ss_pred EEEEC------CC------------------------------C----cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCC
Q 042434 292 KLWDV------ET------------------------------G----ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT 331 (517)
Q Consensus 292 ~iwd~------~~------------------------------~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~ 331 (517)
.||.. .. + .++..+.+|...|.+..|...|+.+++++.|.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 99962 10 0 12345678999999999999999999999999
Q ss_pred ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEE
Q 042434 332 EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNF 408 (517)
Q Consensus 332 ~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l 408 (517)
+ ..+||.....+.....+|....+.++-+|..+++++.+.|.+.++||++..- ..+.+|...|++..|..+. .+
T Consensus 295 T--AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~v 371 (481)
T KOG0300|consen 295 T--ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RV 371 (481)
T ss_pred c--ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ce
Confidence 9 8888998777766666666789999999999999999999999999998544 4566788899999998764 68
Q ss_pred EEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEe-----cCCCCC
Q 042434 409 IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEIL-----SGHSMT 483 (517)
Q Consensus 409 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~h~~~ 483 (517)
++|+.|.+|++||+++...+...+..... +.-+..+..+..|+.-..+..|++||+...+ +..+ ++|...
T Consensus 372 VSgSDDrTvKvWdLrNMRsplATIRtdS~----~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRqgHrRM 446 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSPLATIRTDSP----ANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQGHRRM 446 (481)
T ss_pred eecCCCceEEEeeeccccCcceeeecCCc----cceeEeecCCceEEeccCCceEEEEecCCCc-cccCCccccccccee
Confidence 89999999999999887566655554333 2222335566788888889999999987544 3333 479999
Q ss_pred eeEEEecCCCC-cEEEEeeCCCcEEEeCCCCCC
Q 042434 484 VNCVSWNPKRP-KMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 484 v~~v~~~~~~~-~~l~s~~~dg~v~iw~~~~~~ 515 (517)
|+|++|..+.+ .-|++||.|..+.-|++...+
T Consensus 447 V~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 447 VTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eeeeeccccCcccccccccccceeeeeEecccC
Confidence 99999976542 247899999999999998764
No 78
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=3.3e-28 Score=201.26 Aligned_cols=286 Identities=17% Similarity=0.247 Sum_probs=230.4
Q ss_pred HHHHHHHhccccccCCCCCc-cccccCCCcc-cccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC
Q 042434 176 LVETAVTSQIDSCQYHNSSV-AISLYEDHCC-GRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE 253 (517)
Q Consensus 176 l~~~~~~~q~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~ 253 (517)
++-|.++..+++..|+.... .++...|+.. .|....++.+.++.||++.|+|+..+.+.++++||+.|.++++||+.+
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 34456777888888877666 7777777765 455669999999999999999999999999999999999999999998
Q ss_pred CCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-----CCeEEEEECC-------CCcEEEEeCCCCCceEEEEEeCCC
Q 042434 254 DSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-----AEVLKLWDVE-------TGICKHTFGDHGFIVSSCAWFPDS 321 (517)
Q Consensus 254 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~v~~i~~~~~~ 321 (517)
++.+ .++. ...+|..+.|+++|++++.+.. .+.|.++|++ ..++...+..+...++.+-|.|-+
T Consensus 84 Gk~l---a~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 84 GKQL---ATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred CcEE---EEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 8654 3333 4688999999999998887643 4689999997 445677777888999999999999
Q ss_pred CeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEE
Q 042434 322 KRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSL 399 (517)
Q Consensus 322 ~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~ 399 (517)
.+|++|..||. |..||..+ .........|...|+.+.+++|..++++++.|.+-++||..+.. ........|+++.
T Consensus 160 ~~ii~Ghe~G~--is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~a 237 (327)
T KOG0643|consen 160 ETIIAGHEDGS--ISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTA 237 (327)
T ss_pred CEEEEecCCCc--EEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccce
Confidence 99999999999 88888875 45555545556699999999999999999999999999999988 7777888999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEc--CCC-----------CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEE
Q 042434 400 SVSVDCKNFIVNLNSQEIHMWDV--AGK-----------WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIW 466 (517)
Q Consensus 400 ~~s~~~~~l~~~~~d~~i~~~d~--~~~-----------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 466 (517)
+++|....++.++.....-+--. +.+ .+....+.+|-.+ |.+++++|+|+..++|++||.|++.
T Consensus 238 aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGP---INsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 238 AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGP---INSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccC---cceeEECCCCcccccCCCCceEEEE
Confidence 99998888777765332222111 111 1334456677766 7778889999999999999999998
Q ss_pred ecCC
Q 042434 467 NRRN 470 (517)
Q Consensus 467 d~~~ 470 (517)
....
T Consensus 315 ~Fd~ 318 (327)
T KOG0643|consen 315 HFDS 318 (327)
T ss_pred Eecc
Confidence 6543
No 79
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.3e-29 Score=217.45 Aligned_cols=251 Identities=20% Similarity=0.290 Sum_probs=206.0
Q ss_pred EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc---EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEE
Q 042434 260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI---CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF 336 (517)
Q Consensus 260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~ 336 (517)
.+.+..|.+.|+-+.||++|++||+++.|.+..+|++.... ..+++.+|..+|..+.|+||.+++++++.+.. ++
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~--~~ 294 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV--LS 294 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh--ee
Confidence 35678899999999999999999999999999999886543 46778899999999999999999999999998 99
Q ss_pred EEeCCCCeeE-eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeC
Q 042434 337 MCDCDGNEIK-AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLN 413 (517)
Q Consensus 337 ~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~ 413 (517)
.||..+.... .+...+...+.+++|.|||..+++|+.|+.+..||+.... .........+.++++++||+++++.+.
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 9999865544 3333445579999999999999999999999999998765 222223356999999999999999999
Q ss_pred CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCC--eeEEEecC
Q 042434 414 SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMT--VNCVSWNP 491 (517)
Q Consensus 414 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~v~~~~ 491 (517)
|..|++|+..+... ...... .. .+++...|.|++++++.-.+..|++||++..+.+..+.||... +..-+|--
T Consensus 375 d~~i~l~~~e~~~d-r~lise-~~---~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg 449 (519)
T KOG0293|consen 375 DKKIRLYNREARVD-RGLISE-EQ---PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG 449 (519)
T ss_pred ccceeeechhhhhh-hccccc-cC---ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence 99999999866422 112222 22 2566666999999999999999999999999999999998754 44445654
Q ss_pred CCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434 492 KRPKMLASASDDHTIRIWGPCQSSEV 517 (517)
Q Consensus 492 ~~~~~l~s~~~dg~v~iw~~~~~~~v 517 (517)
....+++|||.|+.|+||+..+|+.+
T Consensus 450 ~~~~fiaSGSED~kvyIWhr~sgkll 475 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKVYIWHRISGKLL 475 (519)
T ss_pred CCcceEEecCCCceEEEEEccCCcee
Confidence 44479999999999999999998763
No 80
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1.5e-27 Score=226.34 Aligned_cols=312 Identities=16% Similarity=0.178 Sum_probs=255.3
Q ss_pred cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE
Q 042434 196 AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW 275 (517)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~ 275 (517)
.++...+....|+--.++.+.++.++.+.|+++.=+|--..+|.|..+|+|.++++..+ +.+.+++...+.|++++|
T Consensus 176 vvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d---kil~sFk~d~g~VtslSF 252 (910)
T KOG1539|consen 176 VVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD---KILMSFKQDWGRVTSLSF 252 (910)
T ss_pred EEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC---cEEEEEEccccceeEEEe
Confidence 44555666667777788999999999999999999998899999999999999999776 444666644699999999
Q ss_pred CCCCCe-EEEEeCCCeEEEEECCCCcEEEEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe------
Q 042434 276 SPDDTK-LLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA------ 347 (517)
Q Consensus 276 s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~------ 347 (517)
..||+. +++|+..|.+.+||++..+.+.... .|.+.|....|.|....+++++.|+..++|++|......+.
T Consensus 253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G 332 (910)
T KOG1539|consen 253 RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG 332 (910)
T ss_pred ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccC
Confidence 999965 5667777999999999888777665 78899999999999999999999999999999832110000
Q ss_pred ---------eeC--------------------------------------------------------------------
Q 042434 348 ---------WRG-------------------------------------------------------------------- 350 (517)
Q Consensus 348 ---------~~~-------------------------------------------------------------------- 350 (517)
+.+
T Consensus 333 Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 333 HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence 000
Q ss_pred ---------------------------cC------CCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEe----ecc
Q 042434 351 ---------------------------TR------IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERV----ISE 392 (517)
Q Consensus 351 ---------------------------~~------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~----~~~ 392 (517)
.+ ...+++++.++.|++.+.|++.|.|-+|++.++. ... ..|
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah 492 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH 492 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc
Confidence 11 1357889999999999999999999999999987 222 378
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc
Q 042434 393 EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK 472 (517)
Q Consensus 393 ~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 472 (517)
..+|+.++...-++.+++++.+|.+.+||..+. .....+.-... +..+..+.....++.+..|-.|+++|..+.+
T Consensus 493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k-~l~~~l~l~~~----~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k 567 (910)
T KOG1539|consen 493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKK-VLKKSLRLGSS----ITGIVYHRVSDLLAIALDDFSIRVVDVVTRK 567 (910)
T ss_pred cCceeEEEecCCCceEEEccCcceEEEEecCCc-ceeeeeccCCC----cceeeeeehhhhhhhhcCceeEEEEEchhhh
Confidence 899999999999999999999999999999776 32323221111 3333335566788999999999999999999
Q ss_pred eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 473 PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 473 ~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
.++.+.||.+.|++++||||| +.|++++.|++||+||+.++..
T Consensus 568 vvR~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 568 VVREFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred hhHHhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcce
Confidence 999999999999999999999 7999999999999999998864
No 81
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=9.7e-27 Score=225.85 Aligned_cols=245 Identities=11% Similarity=0.139 Sum_probs=186.9
Q ss_pred eeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCCCc--------EEEEeCCCCC
Q 042434 240 SSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGI--------CKHTFGDHGF 310 (517)
Q Consensus 240 ~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~ 310 (517)
|+.++.|++|+.... .....+.+|.++|.+++|+|+ +.+|++|+.||+|++||+.++. ++..+.+|..
T Consensus 50 GG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 667889999998533 466788999999999999997 7899999999999999997642 3446778999
Q ss_pred ceEEEEEeCCCCe-EEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--
Q 042434 311 IVSSCAWFPDSKR-LVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-- 386 (517)
Q Consensus 311 ~v~~i~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-- 386 (517)
.|.+++|+|++.. +++++.|+. |.+||...... ..+. +...|.+++|+|+|..+++++.|+.|++||++++.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~Dgt--IrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSF--VNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCe--EEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 9999999999876 468899999 77888875443 3332 23579999999999999999999999999999887
Q ss_pred EEeeccCCCeeE-----EEEcCCCCEEEEEeCCC----eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434 387 ERVISEEHPITS-----LSVSVDCKNFIVNLNSQ----EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG 457 (517)
Q Consensus 387 ~~~~~~~~~i~~-----~~~s~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 457 (517)
.....|.+.+.. ..|++++.++++++.++ .|++||++.....+.....+.. ...+...+.+++|.++++|
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-SAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-ccceEEeeeCCCCCEEEEE
Confidence 333445544332 23568889999987764 7999999865344444433322 2233344446679999999
Q ss_pred cCCCcEEEEecCCCceeEEec--CCCCCeeEEEecCCC
Q 042434 458 SENSQIYIWNRRNSKPIEILS--GHSMTVNCVSWNPKR 493 (517)
Q Consensus 458 ~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~ 493 (517)
+.|+.|++|++..+. +..+. .+..++.+++|.|..
T Consensus 282 kGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 282 KGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred ECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 999999999998764 23332 256788999999975
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.9e-28 Score=231.06 Aligned_cols=245 Identities=19% Similarity=0.243 Sum_probs=192.6
Q ss_pred EEEec-cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC--------------------------------C-------
Q 042434 260 KHTLR-SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET--------------------------------G------- 299 (517)
Q Consensus 260 ~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--------------------------------~------- 299 (517)
...+. .|.+.|+++.||+||+|||+||.||.|+||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34455 8999999999999999999999999999998754 0
Q ss_pred ---------------------cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceE
Q 042434 300 ---------------------ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVL 357 (517)
Q Consensus 300 ---------------------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~ 357 (517)
++++.|.+|.+.|..+.|+.+ ++|++++.|.+ |.+|++..+ ++..+. |. ..|+
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKT--VRLWh~~~~~CL~~F~-Hn-dfVT 413 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKT--VRLWHPGRKECLKVFS-HN-DFVT 413 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEecccccc--EEeecCCCcceeeEEe-cC-CeeE
Confidence 112345679999999999965 58999999999 777887754 444444 33 4899
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCc
Q 042434 358 DLAVTP-DGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGH 435 (517)
Q Consensus 358 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 435 (517)
|++|+| |.+++++|+-||.++||++...+ ........-|++++|.|||++.++|+.+|.+++|+..+. .......-+
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l-k~~~~~~I~ 492 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL-KLVSDFHIR 492 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCC-eEEEeeeEe
Confidence 999999 67899999999999999999888 444455678999999999999999999999999998765 333222211
Q ss_pred c--------cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCC--CeeEEEecCCCCcEEEEeeCCCc
Q 042434 436 S--------QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSM--TVNCVSWNPKRPKMLASASDDHT 505 (517)
Q Consensus 436 ~--------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~~~~~l~s~~~dg~ 505 (517)
. ..++.+.+....++ .+++.+.|..|+|||.++..++..++|+.. .-....|+.|| +.|+++++|..
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~--~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dg-k~IVs~seDs~ 569 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPD--EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDG-KHIVSASEDSW 569 (712)
T ss_pred eccCccccCceeeeeEecCCCCC--eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCC-CEEEEeecCce
Confidence 1 12333444333333 677788999999999999999999997643 34567899999 79999999999
Q ss_pred EEEeCCCC
Q 042434 506 IRIWGPCQ 513 (517)
Q Consensus 506 v~iw~~~~ 513 (517)
|+||+...
T Consensus 570 VYiW~~~~ 577 (712)
T KOG0283|consen 570 VYIWKNDS 577 (712)
T ss_pred EEEEeCCC
Confidence 99999853
No 83
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.9e-27 Score=200.27 Aligned_cols=264 Identities=17% Similarity=0.228 Sum_probs=211.1
Q ss_pred cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCC--eEEEEeCCC
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT--KLLTCGNAE 289 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s~~~dg 289 (517)
-.+...+..|.++|++++. +|.|+|+||.|-+|+|||+.... ....+..|.+.|+++.|.+.-. .|++|+.||
T Consensus 33 l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~---qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK---QLGILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred eeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh---hhcceeccccceEEEEecCCcchhheeeecCCC
Confidence 3456678899999999998 67899999999999999996553 3466778999999999998764 899999999
Q ss_pred eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCCCEE
Q 042434 290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDGENL 368 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l 368 (517)
.|.+|+...-.++..+++|.+.|+.++.+|.+++-++.+.|+. +..|++-. +.-......+ ..+.+.|+|.|.++
T Consensus 108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~--lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F 183 (362)
T KOG0294|consen 108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV--LRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHF 183 (362)
T ss_pred cEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCce--eeeehhhcCccceeeccCC--cceeeEEcCCCCEE
Confidence 9999999999999999999999999999999999999999999 88888753 3333333333 34559999999999
Q ss_pred EEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecC
Q 042434 369 ISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFG 447 (517)
Q Consensus 369 ~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 447 (517)
+.+..++ |-+|.+.+.. .........+.++.|. ++..+++|..++.|.+||.... .+...+.+|...+..+....
T Consensus 184 ~v~~~~~-i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~- 259 (362)
T KOG0294|consen 184 VVSGRNK-IDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVKDIASYT- 259 (362)
T ss_pred EEEeccE-EEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhheeeeEEEe-
Confidence 8887765 8889887765 2233333445555554 5678999999999999999875 78888999998876665544
Q ss_pred CCCCcEEEEecCCCcEEEEecCCC-----ceeEEecCCCCCeeEEEe
Q 042434 448 GLDGTFIASGSENSQIYIWNRRNS-----KPIEILSGHSMTVNCVSW 489 (517)
Q Consensus 448 s~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~v~~ 489 (517)
.|++.+|++++.||.|+|||++.. +++..+.. ...++|+..
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred cCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 688899999999999999998865 34555443 455566554
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-28 Score=200.86 Aligned_cols=242 Identities=16% Similarity=0.207 Sum_probs=199.3
Q ss_pred ccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCC
Q 042434 221 HKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVET 298 (517)
Q Consensus 221 h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~ 298 (517)
-.+.+..++|+++ .+.+++++.||++++||.. ..-.++..++.|...|.++.|++- +..++++|.|++|++|+...
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~--~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLT--MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccC--CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 5688999999994 5688899999999999964 334678889999999999999984 56677889999999999999
Q ss_pred CcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc-CCCEEEEEeCCCc
Q 042434 299 GICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP-DGENLISVLSDKD 376 (517)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~ 376 (517)
++.+.++.+|...|...+|+| .++.+++++.|+..++|..+..++.+. +..+. ..+.++.|+. +.+.+++|+.|+.
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~-~Eil~cdw~ky~~~vl~Tg~vd~~ 214 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHN-SEILCCDWSKYNHNVLATGGVDNL 214 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEecc-ceeEeecccccCCcEEEecCCCce
Confidence 999999999999999999999 578999999999966655555566555 44444 5899999998 4568889999999
Q ss_pred EEEEECCCce---EEeeccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc
Q 042434 377 IRILNLGTYA---ERVISEEHPITSLSVSVDC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT 452 (517)
Q Consensus 377 i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 452 (517)
|+.||++..+ .....|.-.|..+.|||.. ..+++++.|-++++||...+...+.++..|..-...+....+ ++.
T Consensus 215 vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~--~~~ 292 (311)
T KOG0277|consen 215 VRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF--DPG 292 (311)
T ss_pred EEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc--cCc
Confidence 9999998876 4556788899999999964 567888999999999998665667777766654443433332 677
Q ss_pred EEEEecCCCcEEEEec
Q 042434 453 FIASGSENSQIYIWNR 468 (517)
Q Consensus 453 ~l~~~~~dg~i~iwd~ 468 (517)
++|+.+.|+.++||+.
T Consensus 293 ~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 293 QVASTGWDELLYVWNP 308 (311)
T ss_pred eeeecccccceeeecc
Confidence 9999999999999984
No 85
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.7e-26 Score=223.34 Aligned_cols=208 Identities=17% Similarity=0.256 Sum_probs=171.1
Q ss_pred EEeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCe----eeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCC
Q 042434 216 QILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSK----LTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAE 289 (517)
Q Consensus 216 ~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~----~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg 289 (517)
..+.+|.+.|++++|+| ++++||+|+.||+|++||+.++.. ...+..+.+|...|.+++|+|++ ++|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 34789999999999999 889999999999999999965421 13456789999999999999985 6999999999
Q ss_pred eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCCCEE
Q 042434 290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDGENL 368 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l 368 (517)
+|+|||+.+++.+..+..|...|.+++|+|++.+|++++.|+. |.+||.+. ..+..+..+....+..+.|.+++..+
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~--IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK--LNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE--EEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 9999999999999999999999999999999999999999999 77888875 44445555544345677889988887
Q ss_pred EEEe----CCCcEEEEECCCce--EEe--eccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCC
Q 042434 369 ISVL----SDKDIRILNLGTYA--ERV--ISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGK 425 (517)
Q Consensus 369 ~~~~----~dg~i~i~d~~~~~--~~~--~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~ 425 (517)
++++ .|+.|++||+++.. ... ......+....|+++++.+++++ .|+.|++||+.++
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 7654 47899999998755 211 12334556677899999999887 4999999999876
No 86
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.3e-28 Score=225.72 Aligned_cols=286 Identities=19% Similarity=0.326 Sum_probs=234.4
Q ss_pred ccCcEE---EEEEC-CCCCEEEEeeCCCcEEEEEecCCCee---eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434 221 HKNEVW---FVQFS-NNGEYLASSSSDCSAIIWKVLEDSKL---TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL 293 (517)
Q Consensus 221 h~~~v~---~~~~s-~~~~~l~t~~~dg~i~iw~~~~~~~~---~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 293 (517)
|...|. .+..+ |+++||.|||.||.|++|++...... .....+..|.+.|..+....+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444444 34444 47788999999999999998644331 235677889999999999999999999999999999
Q ss_pred EECCCC--cEEEEeCCCCCceEEEEE-eCCCCeEEEeeCCCceeEEEEeCCCCee-----------EeeeCcCCCceEEE
Q 042434 294 WDVETG--ICKHTFGDHGFIVSSCAW-FPDSKRLVCGSSDTEKGIFMCDCDGNEI-----------KAWRGTRIPKVLDL 359 (517)
Q Consensus 294 wd~~~~--~~~~~~~~~~~~v~~i~~-~~~~~~l~~~~~d~~v~i~~~~~~~~~~-----------~~~~~~~~~~i~~~ 359 (517)
|+...+ -|..++..|...|.|+++ .++...+++|+-|+. |++||.+.... .....++...|.++
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~--IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRK--IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCcc--EEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 999877 578888999999999999 788899999999999 77888763311 11122445689999
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc
Q 042434 360 AVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ 437 (517)
Q Consensus 360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 437 (517)
+.++.|..+++|+..+.+++||.++.+ ....+|...|..+..++||..+++++.||+|++||+... ....++..|..
T Consensus 178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e 256 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKE 256 (735)
T ss_pred ecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccC
Confidence 999999999999999999999999987 566689999999999999999999999999999999877 77888999988
Q ss_pred CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 438 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
.++.+.+ +|+-..+++|+.||.|+.=|+++......+.....+|..+..+.+. .-+-+++.|+.|+-|....
T Consensus 257 ~VWaL~~---~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~-~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 257 GVWALQS---SPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHD-NSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ceEEEee---CCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhcccc-CCceeeeccccceecCCcc
Confidence 8555444 7888999999999999999999864443444467788888887555 3457888999999998653
No 87
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.6e-28 Score=197.91 Aligned_cols=250 Identities=21% Similarity=0.327 Sum_probs=204.9
Q ss_pred EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC--CCCeEEEEeCCCeEEEE
Q 042434 217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP--DDTKLLTCGNAEVLKLW 294 (517)
Q Consensus 217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iw 294 (517)
.-.+|.+.|..+...-.|+.|||++.|++|+|+.+..+.....+.++.+|.++|..++|.. -|.+||++++||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 3457999999999999999999999999999999987777688899999999999999976 79999999999999999
Q ss_pred ECCCCcE--EEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcCCCceEEEEEccC---C-
Q 042434 295 DVETGIC--KHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTRIPKVLDLAVTPD---G- 365 (517)
Q Consensus 295 d~~~~~~--~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~---~- 365 (517)
.-++|+- ...+..|...|++++|.|. |-.|++++.||.|.|..++.+ +.....+...|.-.|++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 9888853 3355689999999999996 668999999999999998888 44445555556568999999986 4
Q ss_pred ----------CEEEEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCC----CEEEEEeCCCeEEEEEcCCCCc
Q 042434 366 ----------ENLISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDC----KNFIVNLNSQEIHMWDVAGKWE 427 (517)
Q Consensus 366 ----------~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~----~~l~~~~~d~~i~~~d~~~~~~ 427 (517)
+.|++|+.|..|+||+..... ..+..|...+..++|.|.- .++++++.||++.||..+....
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 569999999999999998854 3466788899999999964 5799999999999999864311
Q ss_pred c--ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 428 K--PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 428 ~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
. ...+..... .+-.+.||..|++|++++.|+.|.+|.-.
T Consensus 246 ~wk~tll~~f~~---~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 246 PWKKTLLEEFPD---VVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccccccCCc---ceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1 111222222 24445568999999999999999999643
No 88
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.7e-28 Score=226.47 Aligned_cols=324 Identities=16% Similarity=0.205 Sum_probs=248.6
Q ss_pred cccccCCCCCc-cccccCCCcccccCCC----cccEEEeccccCcEEEEEECCC-----------CCEEEEeeCCCcEEE
Q 042434 185 IDSCQYHNSSV-AISLYEDHCCGRDQIP----TETVQILTEHKNEVWFVQFSNN-----------GEYLASSSSDCSAII 248 (517)
Q Consensus 185 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~l~~h~~~v~~~~~s~~-----------~~~l~t~~~dg~i~i 248 (517)
..+|.|.+... ...++.|+....|... ......+-.|...||.+.--|. ...++|++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 34566765554 5567778776544331 1234445569999999886651 135889999999999
Q ss_pred EEecCCCeeeE----------------------------------EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEE
Q 042434 249 WKVLEDSKLTL----------------------------------KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294 (517)
Q Consensus 249 w~~~~~~~~~~----------------------------------~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 294 (517)
|++........ ....-+....+.+++.+|+|++||+|..-|+++||
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 99864211000 00011234579999999999999999999999999
Q ss_pred ECCCCcEEEEeCCCCCceEEEEEeC---CCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCC--CEE
Q 042434 295 DVETGICKHTFGDHGFIVSSCAWFP---DSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDG--ENL 368 (517)
Q Consensus 295 d~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~--~~l 368 (517)
++..-+....+..|...|.|+.|+. ..++|++++.|.. |.++|... -.+......|...|+++.|...| ..+
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRl--IHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M 564 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRL--IHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM 564 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCce--EEEEecccccchhhhhcccccceeEEEEeecCCceEE
Confidence 9999888888899999999999986 3578999999999 66667653 23333344555789999998887 688
Q ss_pred EEEeCCCcEEEEECCCce--E-----EeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC-ce
Q 042434 369 ISVLSDKDIRILNLGTYA--E-----RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN-KY 440 (517)
Q Consensus 369 ~~~~~dg~i~i~d~~~~~--~-----~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-~~ 440 (517)
++++.|..|.+--.+... . ........+..+++.|..+++++++.|..|++||+.++ +..+.|.+.... ..
T Consensus 565 iscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~ 643 (1080)
T KOG1408|consen 565 ISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGD 643 (1080)
T ss_pred EeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc-ceeeeecccccCCCc
Confidence 999999877654333211 1 11223456889999999999999999999999999988 667777765554 33
Q ss_pred EEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 441 VIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 441 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
.|... ..|.|.|+++.+.|.++.++|..+|+++.++.||...|+.+.|.+|. +.|++.+.||.|.||.+..
T Consensus 644 lIKv~-lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 644 LIKVI-LDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eEEEE-ECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc-hhheeecCCceEEEEECch
Confidence 44443 48999999999999999999999999999999999999999999999 7899999999999999864
No 89
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=4e-27 Score=219.21 Aligned_cols=284 Identities=19% Similarity=0.304 Sum_probs=236.2
Q ss_pred ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEE-EEECC-CCCeEEEEeCCCe
Q 042434 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF-VAWSP-DDTKLLTCGNAEV 290 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~-l~~s~-~~~~l~s~~~dg~ 290 (517)
+..+.+.||+..|..+++.+.. .++++|.||++++|+-.. +.+.....+.+|.+-|.+ +++.+ ++-.+++|+.|++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~-~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKG-KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccC-cccccceecccCcceeeccceeccccCcceEeecccce
Confidence 4567899999999998876654 799999999999998753 344445667778888777 88875 4556999999999
Q ss_pred EEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEE
Q 042434 291 LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLIS 370 (517)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 370 (517)
+.+|...+..+...+.+|...|.|++...++. +++||.|.+ +.+|... .....+.+ |...|.++..-|++ .+++
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T--akvW~~~-~l~~~l~g-H~asVWAv~~l~e~-~~vT 156 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDST--AKVWRIG-ELVYSLQG-HTASVWAVASLPEN-TYVT 156 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccc--eEEecch-hhhcccCC-cchheeeeeecCCC-cEEe
Confidence 99999999999999999999999999887777 999999999 5555443 22222444 44689999999988 8899
Q ss_pred EeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCC
Q 042434 371 VLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLD 450 (517)
Q Consensus 371 ~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 450 (517)
|+.|.+|++|.-.+....+.+|...|..+++-+++ .|++++.||.|++|++.+ ..+..+.+|..-.+.+.. ..+
T Consensus 157 gsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g--e~l~~~~ghtn~vYsis~---~~~ 230 (745)
T KOG0301|consen 157 GSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG--EVLLEMHGHTNFVYSISM---ALS 230 (745)
T ss_pred ccCcceeeeccCCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC--ceeeeeeccceEEEEEEe---cCC
Confidence 99999999999876668888899999999999874 588999999999999954 678888999988777763 467
Q ss_pred CcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 451 GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 451 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
+..++++++|++++||+.. ++.+.+.-....|+++.+-++|. +++|+.||.||||.....
T Consensus 231 ~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 231 DGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD--IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred CCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC--EEEeccCceEEEEEeccc
Confidence 7899999999999999976 78888876667999999999984 889999999999987744
No 90
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.5e-27 Score=195.47 Aligned_cols=247 Identities=21% Similarity=0.295 Sum_probs=210.7
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEE--eCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEE
Q 042434 261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT--FGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFM 337 (517)
Q Consensus 261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~ 337 (517)
+.+.+|...|.+++|+.+|..|++|+.|+++.+|+++..+.... ..+|.+.|-.++|+| ....|++++.|.+ |.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~--ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT--IRI 91 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCce--EEE
Confidence 45678999999999999999999999999999999987755443 357888999999988 4678999999999 777
Q ss_pred EeCC-CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCC
Q 042434 338 CDCD-GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQ 415 (517)
Q Consensus 338 ~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 415 (517)
||.+ +++........ .-.-+.|+|+|.++++++.|..|.+.|.++.+ .........+..++|+.++..++.....|
T Consensus 92 wd~r~~k~~~~i~~~~--eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKG--ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLG 169 (313)
T ss_pred EEeccCcEEEEeeccC--cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCc
Confidence 7776 44444444333 34567899999999999999999999999887 55556667788999998888888888889
Q ss_pred eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCc
Q 042434 416 EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPK 495 (517)
Q Consensus 416 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 495 (517)
+|.|...... +++..+..|+.... ++.++|+|+|+|+|+.|..+.+||+...-+++.+.-+.-+|..+.|+.+| +
T Consensus 170 ~v~ILsypsL-kpv~si~AH~snCi---cI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg-~ 244 (313)
T KOG1407|consen 170 CVEILSYPSL-KPVQSIKAHPSNCI---CIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDG-R 244 (313)
T ss_pred eEEEEecccc-ccccccccCCcceE---EEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCc-c
Confidence 9999998866 88888999987633 44569999999999999999999999999999999999999999999999 8
Q ss_pred EEEEeeCCCcEEEeCCCCCCC
Q 042434 496 MLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 496 ~l~s~~~dg~v~iw~~~~~~~ 516 (517)
+||++|.|..|-|=++.+|.+
T Consensus 245 ~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred eeeccCccceEEeEecccCCe
Confidence 999999999998888888765
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4e-26 Score=193.08 Aligned_cols=270 Identities=19% Similarity=0.230 Sum_probs=219.1
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 300 (517)
..+.|..+.|+|.+..|++++.||++++|++... .. .....|..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---~l-~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---SL-KLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch---hh-hhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 4788999999999999999999999999999654 22 22334899999999986 5689999999999999998887
Q ss_pred EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 042434 301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRIL 380 (517)
Q Consensus 301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 380 (517)
.. .+..|..+|.|+.+++-...+++|+.|++ |.+||.++.......... ..|.++.. .|+.|++|+.+..+.+|
T Consensus 87 ~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~--ik~wD~R~~~~~~~~d~~-kkVy~~~v--~g~~LvVg~~~r~v~iy 160 (323)
T KOG1036|consen 87 ED-QIGTHDEGIRCIEYSYEVGCVISGSWDKT--IKFWDPRNKVVVGTFDQG-KKVYCMDV--SGNRLVVGTSDRKVLIY 160 (323)
T ss_pred ce-eeccCCCceEEEEeeccCCeEEEcccCcc--EEEEeccccccccccccC-ceEEEEec--cCCEEEEeecCceEEEE
Confidence 54 45589999999999999999999999999 888998863332222222 26777665 46789999999999999
Q ss_pred ECCCceEE----eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC---CccceEEeCccc------CceEEEeecC
Q 042434 381 NLGTYAER----VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK---WEKPFKYTGHSQ------NKYVIRSCFG 447 (517)
Q Consensus 381 d~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~------~~~~i~~~~~ 447 (517)
|+++.... ....+..+.++++-|++.-+++++-+|.|.+=.+... ......+..|.. ..+++..+.|
T Consensus 161 DLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 161 DLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred EcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEe
Confidence 99987722 3345567899999999999999999999887655433 133444555543 3577888999
Q ss_pred CCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC
Q 042434 448 GLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD 502 (517)
Q Consensus 448 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~ 502 (517)
+|--..++||+.||.|.+||..+.+.+..+......|.+++|+.+| ..||.++.
T Consensus 241 hp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG-~~LAia~s 294 (323)
T KOG1036|consen 241 HPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDG-SLLAIASS 294 (323)
T ss_pred ccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCC-CeEEEEec
Confidence 9999999999999999999999999999998878889999999999 68888763
No 92
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=3.9e-28 Score=198.89 Aligned_cols=258 Identities=21% Similarity=0.321 Sum_probs=217.4
Q ss_pred ccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEE
Q 042434 205 CGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLT 284 (517)
Q Consensus 205 ~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 284 (517)
....--++.-+.++.||++.|+....+.+...-|+++.|-+-+|||.-++..+ +++ .|..-|.+++|+.|.++|++
T Consensus 42 mlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel---hsf-~hkhivk~~af~~ds~~llt 117 (334)
T KOG0278|consen 42 MLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL---HSF-EHKHIVKAVAFSQDSNYLLT 117 (334)
T ss_pred hhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh---hhh-hhhheeeeEEecccchhhhc
Confidence 34455567789999999999999999999999999999999999999877543 443 48889999999999999999
Q ss_pred EeCCCeEEEEECCCCc-EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEc
Q 042434 285 CGNAEVLKLWDVETGI-CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVT 362 (517)
Q Consensus 285 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~ 362 (517)
|+.+..++|+|++..+ +...+.+|.+.|..+.|....+.|++++.|++ |.+||..+. .+..+...+ +|+++.++
T Consensus 118 gg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t--VRLWD~rTgt~v~sL~~~s--~VtSlEvs 193 (334)
T KOG0278|consen 118 GGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT--VRLWDHRTGTEVQSLEFNS--PVTSLEVS 193 (334)
T ss_pred cchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc--eEEEEeccCcEEEEEecCC--CCcceeec
Confidence 9999999999997654 56678899999999999999999999999999 888888754 444444444 79999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceE
Q 042434 363 PDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441 (517)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 441 (517)
++|+++.+ ...+.|.+||..+.. .........|.+.+++|+...+++|+.|..++.||..++........+|..+
T Consensus 194 ~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp--- 269 (334)
T KOG0278|consen 194 QDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP--- 269 (334)
T ss_pred cCCCEEEE-ecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc---
Confidence 99987655 466789999999877 6667778889999999999999999999999999999884444334677766
Q ss_pred EEeecCCCCCcEEEEecCCCcEEEEecCCCcee
Q 042434 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI 474 (517)
Q Consensus 442 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 474 (517)
+.++.|+|+|...++||+||+|++|....++.-
T Consensus 270 VhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 270 VHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 666777999999999999999999998766543
No 93
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.8e-26 Score=195.64 Aligned_cols=288 Identities=20% Similarity=0.266 Sum_probs=212.8
Q ss_pred EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCee--eEEEEeccCCCCEEEEEECCCCCeEEE-EeCCCeE
Q 042434 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKL--TLKHTLRSHQNPVSFVAWSPDDTKLLT-CGNAEVL 291 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~i 291 (517)
+..|+||.+.|++++||.||++|||++.|++|+||++.+-... +.++. .-.-+..+.+.|+||-+-++. +-...++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEE
Confidence 5578999999999999999999999999999999998532110 01110 111234678899999766554 4445589
Q ss_pred EEEECCC---CcEEEE--------e-CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEE
Q 042434 292 KLWDVET---GICKHT--------F-GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDL 359 (517)
Q Consensus 292 ~iwd~~~---~~~~~~--------~-~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~ 359 (517)
++|.+.. |..... | +.|...+..+-...++.+|++++.|.. |.+|+..|+.+..+..... .-+..
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~--i~lw~lkGq~L~~idtnq~-~n~~a 234 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK--ICLWDLKGQLLQSIDTNQS-SNYDA 234 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCc--EEEEecCCceeeeeccccc-cccce
Confidence 9997642 221111 1 245666777777788999999999999 9999999888777665553 56678
Q ss_pred EEccCCCEEEEEeCCCcEEEEECC---Cce-------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--
Q 042434 360 AVTPDGENLISVLSDKDIRILNLG---TYA-------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE-- 427 (517)
Q Consensus 360 ~~~~~~~~l~~~~~dg~i~i~d~~---~~~-------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-- 427 (517)
+.+|+|+++++++....|++|.+- .+. ....+|...|..++|+++...+++.+.||.+++||+.-...
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG 314 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence 999999999999999999999862 221 35567888999999999999999999999999999853211
Q ss_pred ----cceEE--eCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-CCCCCeeEEEecCCCCcEEEEe
Q 042434 428 ----KPFKY--TGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-GHSMTVNCVSWNPKRPKMLASA 500 (517)
Q Consensus 428 ----~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~ 500 (517)
..... .-+..+...++ +..+|+|..|+.+. ...+++|..++|+...++. .|...|.+++|+++| .+++|+
T Consensus 315 qDpk~Lk~g~~pl~aag~~p~R-L~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g-~~~atc 391 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHAAGSEPVR-LELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDG-KYIATC 391 (420)
T ss_pred CCchHhhcCCcchhhcCCCceE-EEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCC-cEEeee
Confidence 11111 12222333343 33489999888654 5679999999998776665 599999999999999 788888
Q ss_pred eCCCcEEEeC
Q 042434 501 SDDHTIRIWG 510 (517)
Q Consensus 501 ~~dg~v~iw~ 510 (517)
| |..+++..
T Consensus 392 G-dr~vrv~~ 400 (420)
T KOG2096|consen 392 G-DRYVRVIR 400 (420)
T ss_pred c-ceeeeeec
Confidence 7 55677765
No 94
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.4e-27 Score=216.69 Aligned_cols=257 Identities=23% Similarity=0.278 Sum_probs=215.8
Q ss_pred cccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEecc-CCCCEEEEEECCCCCeE
Q 042434 204 CCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRS-HQNPVSFVAWSPDDTKL 282 (517)
Q Consensus 204 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~l 282 (517)
...|+............+...|+++.|+++|.+||+|..+|.|.|||..+. .....+.+ |...|.+++|. +..+
T Consensus 199 vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~---k~~~~~~~~h~~rvg~laW~--~~~l 273 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ---KKTRTLRGSHASRVGSLAWN--SSVL 273 (484)
T ss_pred EEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc---cccccccCCcCceeEEEecc--CceE
Confidence 344566666655555656999999999999999999999999999999654 34466677 99999999998 6789
Q ss_pred EEEeCCCeEEEEECCCCcEEEE-eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434 283 LTCGNAEVLKLWDVETGICKHT-FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV 361 (517)
Q Consensus 283 ~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 361 (517)
.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+.++++|+.|+. +.+||............|...|..++|
T Consensus 274 ssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~--~~Iwd~~~~~p~~~~~~H~aAVKA~aw 351 (484)
T KOG0305|consen 274 SSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNV--VFIWDGLSPEPKFTFTEHTAAVKALAW 351 (484)
T ss_pred EEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccc--eEeccCCCccccEEEeccceeeeEeee
Confidence 9999999999999988776555 7889999999999999999999999999 888888665555555566679999999
Q ss_pred ccC-CCEEEEEe--CCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEe--CCCeEEEEEcCCCCccceEEeCc
Q 042434 362 TPD-GENLISVL--SDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNL--NSQEIHMWDVAGKWEKPFKYTGH 435 (517)
Q Consensus 362 ~~~-~~~l~~~~--~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~ 435 (517)
+|- ...||+|+ .|+.|++||..++. .........|.++.|++..+-++++. .++.|.+|+..+. .....+.+|
T Consensus 352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~gH 430 (484)
T KOG0305|consen 352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAELLGH 430 (484)
T ss_pred CCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeeecCC
Confidence 995 44777664 58999999999888 66777888999999999998887754 4678999999885 778888899
Q ss_pred ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434 436 SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS 471 (517)
Q Consensus 436 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 471 (517)
... +-.+.++|||..+++|+.|.++++|++-..
T Consensus 431 ~~R---Vl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 431 TSR---VLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cce---eEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 876 445566999999999999999999998764
No 95
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.4e-26 Score=222.45 Aligned_cols=267 Identities=21% Similarity=0.299 Sum_probs=217.7
Q ss_pred cccccCCCcc-cccCCCcccEEE-eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEE
Q 042434 196 AISLYEDHCC-GRDQIPTETVQI-LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFV 273 (517)
Q Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~-l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l 273 (517)
....+.+... .|+..+...+.. +.||.+.|+++++..-+.+|++|+.|.+++|||..++ ....++.+|.+.|.++
T Consensus 221 ~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg---~C~~~l~gh~stv~~~ 297 (537)
T KOG0274|consen 221 FKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG---ECTHSLQGHTSSVRCL 297 (537)
T ss_pred EEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC---cEEEEecCCCceEEEE
Confidence 3344444444 788888888888 9999999999999877889999999999999998766 6678999999999999
Q ss_pred EECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcC
Q 042434 274 AWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTR 352 (517)
Q Consensus 274 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~ 352 (517)
... +..+++|+.|.+|++|+++++.++..+.+|..+|.++..+ +.++++|+.|++ |.+|+... +.+..+.+ |
T Consensus 298 ~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~--v~VW~~~~~~cl~sl~g-H 370 (537)
T KOG0274|consen 298 TID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGT--VKVWDPRTGKCLKSLSG-H 370 (537)
T ss_pred Ecc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCce--EEEEEhhhceeeeeecC-C
Confidence 875 4578889999999999999999999998899999999997 889999999998 77777764 55555665 6
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEECCCc-e--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc
Q 042434 353 IPKVLDLAVTPDGENLISVLSDKDIRILNLGTY-A--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP 429 (517)
Q Consensus 353 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~ 429 (517)
...|.++.+.+. ..+++|+.|++|++||+++. + .....|..-+ -.+...++.+++++.|+.|++||...+ ...
T Consensus 371 ~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v--~~l~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~ 446 (537)
T KOG0274|consen 371 TGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV--SSLLLRDNFLVSSSADGTIKLWDAEEG-ECL 446 (537)
T ss_pred cceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc--cccccccceeEeccccccEEEeecccC-cee
Confidence 679999988766 89999999999999999998 5 3333444444 334456789999999999999999887 666
Q ss_pred eEEeCc-ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC
Q 042434 430 FKYTGH-SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS 481 (517)
Q Consensus 430 ~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 481 (517)
..+.+. ... +.++.+. ...+++++.||.+++||++++++...+-.+.
T Consensus 447 ~~~~~~~~~~---v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 447 RTLEGRHVGG---VSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred eeeccCCccc---EEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhcc
Confidence 777663 343 4444322 4678999999999999999999888774443
No 96
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=7.6e-27 Score=207.49 Aligned_cols=260 Identities=19% Similarity=0.321 Sum_probs=198.5
Q ss_pred ccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCee-------eEEEEeccCCCCEEEEEECCCC-CeEEEEeCCC
Q 042434 219 TEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKL-------TLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAE 289 (517)
Q Consensus 219 ~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~-------~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg 289 (517)
-.|.+.|+.+.+-| +...+|+++..+.|.|||..+.... .+...+.+|...-.+++|++.. -.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 35999999999999 5567788889999999998653322 2334788999988889999854 5789999999
Q ss_pred eEEEEECCCCc-------EEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCC--CCeeEeeeCcCCCceEEE
Q 042434 290 VLKLWDVETGI-------CKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCD--GNEIKAWRGTRIPKVLDL 359 (517)
Q Consensus 290 ~i~iwd~~~~~-------~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~~~~~i~~~ 359 (517)
+|++||+.... ....+.+|...|..++|++- ...|++++.|+. +.+||.+ ..+.......+.+.+.|+
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~--L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK--LMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe--EEEEEcCCCCCCCcccccccCCceeEE
Confidence 99999996532 34567899999999999994 567888899998 8888988 444444555666789999
Q ss_pred EEccCC-CEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCccceEEeC
Q 042434 360 AVTPDG-ENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTG 434 (517)
Q Consensus 360 ~~~~~~-~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 434 (517)
+|+|-+ ..|++|+.|++|++||+++.. .....|...|..+.|+|.. ..+++++.|+.+.+||+..-....
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq----- 353 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ----- 353 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc-----
Confidence 999954 467788889999999988866 4556677788888888854 445666678888888874321100
Q ss_pred cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 435 HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 435 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
+++ -..|| ..+++..-.||...|..+.|+|+.+..++|++.|+.+.||++.
T Consensus 354 -------------~~e------da~dg--------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 354 -------------SPE------DAEDG--------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred -------------Chh------hhccC--------CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 000 01111 2345667778999999999999999999999999999999986
No 97
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.3e-26 Score=227.02 Aligned_cols=255 Identities=23% Similarity=0.336 Sum_probs=207.0
Q ss_pred cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC---------------CCeeeEEEEeccCCCCEEEEEEC
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE---------------DSKLTLKHTLRSHQNPVSFVAWS 276 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~---------------~~~~~~~~~~~~h~~~v~~l~~s 276 (517)
.+.+.....|.+.|+|+.|+|||++||+||.|+.|.||.... -+.++.+..+.+|.+.|..++|+
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 456677788999999999999999999999999999999862 02356778899999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeC-----
Q 042434 277 PDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRG----- 350 (517)
Q Consensus 277 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~----- 350 (517)
|++.+|++++.|++|.|||..+.+.+..+.+|...|..+.|.|-|++|++-+.|++ +.+|+...-.+ +.+..
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrt--ikvwrt~dw~i~k~It~pf~~~ 216 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRT--LKVWRTSDWGIEKSITKPFEES 216 (942)
T ss_pred CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCce--EEEEEcccceeeEeeccchhhC
Confidence 99999999999999999999999999999999999999999999999999999999 66666543222 21111
Q ss_pred cCCCceEEEEEccCCCEEEEEeC----CCcEEEEECCCce--EEeeccCCCeeEEEEcCC-----CC------------E
Q 042434 351 TRIPKVLDLAVTPDGENLISVLS----DKDIRILNLGTYA--ERVISEEHPITSLSVSVD-----CK------------N 407 (517)
Q Consensus 351 ~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~-----~~------------~ 407 (517)
.....+..+.|+|||.+|++... -..+.|.+-.+.+ ....+|..++.++.|+|. .+ .
T Consensus 217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i 296 (942)
T KOG0973|consen 217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI 296 (942)
T ss_pred CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence 12235788999999999997643 3468888877776 678899999999999982 11 5
Q ss_pred EEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434 408 FIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS 471 (517)
Q Consensus 408 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 471 (517)
+++|+.|++|.+|..... .+.. ..|.-....|.-+.|+|||..|+++|.||+|.++.+...
T Consensus 297 ~AvgSqDrSlSVW~T~~~-RPl~--vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 297 AAVGSQDRSLSVWNTALP-RPLF--VIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEecCCccEEEEecCCC-Cchh--hhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 788999999999998443 2222 222222334667778999999999999999999998753
No 98
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=6.1e-26 Score=207.86 Aligned_cols=294 Identities=21% Similarity=0.306 Sum_probs=227.1
Q ss_pred ccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCC--eEEE
Q 042434 207 RDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT--KLLT 284 (517)
Q Consensus 207 ~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~--~l~s 284 (517)
...+|..+...+.||++.|.|++..|.|.+||+|+.||+|+||.+.++.. +.++. ..+.|.|++|+|.+. .||+
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc---vr~~~-~d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC---VRTVQ-FDSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE---EEEEe-ecceeEEEEecCCCCceeEEE
Confidence 45677888999999999999999999999999999999999999987744 44443 356899999999764 3443
Q ss_pred EeCCCeEEEEECCCC-------------------------------------cEEEEeCCCCCceEEEEEeCCCCeEEEe
Q 042434 285 CGNAEVLKLWDVETG-------------------------------------ICKHTFGDHGFIVSSCAWFPDSKRLVCG 327 (517)
Q Consensus 285 ~~~dg~i~iwd~~~~-------------------------------------~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 327 (517)
+- ...+.|-+..-| .-++..-.|...|..+.|+..|.+|++.
T Consensus 461 A~-~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV 539 (733)
T KOG0650|consen 461 AV-GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV 539 (733)
T ss_pred Ee-cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence 32 223444332111 0012223577889999999999999997
Q ss_pred eCC-CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCC
Q 042434 328 SSD-TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVD 404 (517)
Q Consensus 328 ~~d-~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~ 404 (517)
..+ +.-.|.+..+.......-.....+.+.++.|+|...++++++. ..|++||+.... .........+..++++|.
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPN 618 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCC
Confidence 664 3444777777654444433344468999999999998888765 569999998766 455566678999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC------CC---ceeE
Q 042434 405 CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR------NS---KPIE 475 (517)
Q Consensus 405 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~------~~---~~~~ 475 (517)
|..+++++.|+.+..||+.-...+.+.+..|... ++.+++++.-.++++|+.||++.|+.-. .. -++.
T Consensus 619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a---vr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK 695 (733)
T KOG0650|consen 619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA---VRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLK 695 (733)
T ss_pred CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh---hhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeee
Confidence 9999999999999999998765666777777665 6777789999999999999999998532 11 3677
Q ss_pred EecCCCCC----eeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 476 ILSGHSMT----VNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 476 ~~~~h~~~----v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
.+.+|... |.++.|||..+ .|+|+|.||+|++|-
T Consensus 696 ~L~gH~~~~~~gVLd~~wHP~qp-WLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 696 RLRGHEKTNDLGVLDTIWHPRQP-WLFSAGADGTIRLFT 733 (733)
T ss_pred eccCceeecccceEeecccCCCc-eEEecCCCceEEeeC
Confidence 88898755 99999999995 899999999999983
No 99
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2e-27 Score=201.95 Aligned_cols=275 Identities=15% Similarity=0.230 Sum_probs=219.5
Q ss_pred ccccccCCCCCc-cccccCCC-cccccCCCcccEEE--------eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC
Q 042434 184 QIDSCQYHNSSV-AISLYEDH-CCGRDQIPTETVQI--------LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE 253 (517)
Q Consensus 184 q~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~--------l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~ 253 (517)
...+..|.|+.. .++.+-|+ +..|+...++..+- +--|.++|.|+.||.|...||+|+.||.|+||.+.+
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t 294 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET 294 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence 344556777666 44444444 44555555544333 345889999999999999999999999999999988
Q ss_pred CCeeeEEEEec-cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc
Q 042434 254 DSKLTLKHTLR-SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332 (517)
Q Consensus 254 ~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~ 332 (517)
+.. ++.+. .|+..|+|+.|+.|+..+++++.|.++++.-+.+|++++.|.+|...|+...|.+||..+++++.||+
T Consensus 295 G~C---lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt 371 (508)
T KOG0275|consen 295 GQC---LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT 371 (508)
T ss_pred chH---HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence 843 34554 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCCC-CeeEeeeCcC-CCceEEEEEccCC-CEEEEEeCCCcEEEEECCCceEEee----ccCCCeeEEEEcCCC
Q 042434 333 KGIFMCDCDG-NEIKAWRGTR-IPKVLDLAVTPDG-ENLISVLSDKDIRILNLGTYAERVI----SEEHPITSLSVSVDC 405 (517)
Q Consensus 333 v~i~~~~~~~-~~~~~~~~~~-~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~i~~~~~s~~~ 405 (517)
+.+|+..+ .++..+.... .-+|.++..-|.+ ..++++...+++++.++.......+ ..++...+.+++|.|
T Consensus 372 --vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkG 449 (508)
T KOG0275|consen 372 --VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKG 449 (508)
T ss_pred --EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCC
Confidence 77777764 4444444332 3367777777754 5888999999999999987653332 244567788999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434 406 KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN 467 (517)
Q Consensus 406 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 467 (517)
.++.+.+.|+.++.|...++ .....+..|......+ ..+|..+.+++-++||.+++|.
T Consensus 450 ewiYcigED~vlYCF~~~sG-~LE~tl~VhEkdvIGl---~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 450 EWIYCIGEDGVLYCFSVLSG-KLERTLPVHEKDVIGL---THHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cEEEEEccCcEEEEEEeecC-ceeeeeeccccccccc---ccCcccchhhhhcccchhhhcC
Confidence 99999999999999999877 6666677776653333 3489999999999999999995
No 100
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=212.31 Aligned_cols=284 Identities=21% Similarity=0.349 Sum_probs=217.5
Q ss_pred EEECC---CCCEEEEeeCCCcEEEEEecCCCe---eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434 228 VQFSN---NGEYLASSSSDCSAIIWKVLEDSK---LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC 301 (517)
Q Consensus 228 ~~~s~---~~~~l~t~~~dg~i~iw~~~~~~~---~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 301 (517)
+.|++ ....||.+..||.|.++|.....- ......+..|.+.|..+.|.|....|++++.|.++++||++++++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55655 346899999999999999853211 012345678999999999999778999999999999999999988
Q ss_pred EEE--eCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCeeEe-------e----eC----------------c
Q 042434 302 KHT--FGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNEIKA-------W----RG----------------T 351 (517)
Q Consensus 302 ~~~--~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~-------~----~~----------------~ 351 (517)
... +.+|...|.+++|.|. ...|++|+.||. +.+||++-+.... + .. .
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~--illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE--ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCc--EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 876 7899999999999995 557889999999 6666654211000 0 00 1
Q ss_pred CCCceEE---EEEccCCCEEEEEeC-CCcEEEEECCCceEEe----------ecc---CCCeeEEEEcCCCCEEEEEeCC
Q 042434 352 RIPKVLD---LAVTPDGENLISVLS-DKDIRILNLGTYAERV----------ISE---EHPITSLSVSVDCKNFIVNLNS 414 (517)
Q Consensus 352 ~~~~i~~---~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~----------~~~---~~~i~~~~~s~~~~~l~~~~~d 414 (517)
+...|.+ +.+..|...|++++. |+.|+|||++...... ..+ ...+.++.....|.++++.+.|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 1123334 556678888888877 9999999998765111 111 2357788888889999999999
Q ss_pred CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc-eeEEecCCCCCeeEEEecCC
Q 042434 415 QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK-PIEILSGHSMTVNCVSWNPK 492 (517)
Q Consensus 415 ~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~ 492 (517)
+.|++|++.+. ..+...+.++....+.+..+. +||+.++++|+.|...++|.+.+.+ ....+.+|.-.|++++|.|.
T Consensus 293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~l-Spd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSEL-SPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CcEEEEeccccCcCchhhccCcccceeeeeeec-CCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 99999999764 244555666666666666655 8999999999999999999998764 56677899999999999987
Q ss_pred CCcEEEEeeCCCcEEEeCCCCC
Q 042434 493 RPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 493 ~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
...-++||++|..++||++..+
T Consensus 372 ~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 372 ATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred cCCCceeeccCcceEEEeccCc
Confidence 6556899999999999999765
No 101
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=4.6e-25 Score=214.23 Aligned_cols=225 Identities=16% Similarity=0.093 Sum_probs=174.9
Q ss_pred EeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCC---------eeEeeeCcCCC
Q 042434 285 CGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGN---------EIKAWRGTRIP 354 (517)
Q Consensus 285 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~---------~~~~~~~~~~~ 354 (517)
|+.++.+++|+......+..+.+|...|.+++|+|+ +.+|++|+.|+. |.+|+.... .+..+ ..|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dgt--IrIWDi~t~~~~~~~i~~p~~~L-~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLT--IRVWEIPHNDESVKEIKDPQCIL-KGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCe--EEEEECCCCCccccccccceEEe-ecCCC
Confidence 567889999999888888899999999999999997 789999999999 667776531 11222 34456
Q ss_pred ceEEEEEccCCCEE-EEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEE
Q 042434 355 KVLDLAVTPDGENL-ISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKY 432 (517)
Q Consensus 355 ~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 432 (517)
.|.+++|+|++..+ ++++.|+.|++||++++. .....+...+.+++|+|+|..+++++.|+.|++||++++ .....+
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg-~~i~tl 205 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ-EIASSF 205 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC-cEEEEE
Confidence 89999999998764 688999999999999877 333446678999999999999999999999999999987 666778
Q ss_pred eCcccCceE--EEeecCCCCCcEEEEecCCC----cEEEEecCC-CceeEEecC--CCCCeeEEEecCCCCcEEEEeeCC
Q 042434 433 TGHSQNKYV--IRSCFGGLDGTFIASGSENS----QIYIWNRRN-SKPIEILSG--HSMTVNCVSWNPKRPKMLASASDD 503 (517)
Q Consensus 433 ~~~~~~~~~--i~~~~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~d 503 (517)
.+|...... +....+++++.+|++++.|+ .|++||+++ ++++..+.. +.+.+......+++ .++++|+.|
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg-~l~lsGkGD 284 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG-LIYLIGKGD 284 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC-CEEEEEECC
Confidence 888765322 22223468889999988774 799999985 566665543 23333333334456 789999999
Q ss_pred CcEEEeCCCCC
Q 042434 504 HTIRIWGPCQS 514 (517)
Q Consensus 504 g~v~iw~~~~~ 514 (517)
++|++|++..+
T Consensus 285 ~tIr~~e~~~~ 295 (568)
T PTZ00420 285 GNCRYYQHSLG 295 (568)
T ss_pred CeEEEEEccCC
Confidence 99999999765
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=7.2e-26 Score=199.68 Aligned_cols=257 Identities=18% Similarity=0.227 Sum_probs=213.3
Q ss_pred cccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE
Q 042434 204 CCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL 283 (517)
Q Consensus 204 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 283 (517)
...++....+.+..++||.-.|+.+.|+|+...+++++.|..|+||...... .......|..+|+.+..+|.|.||+
T Consensus 243 av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---~~~~~~~h~~~V~~ls~h~tgeYll 319 (506)
T KOG0289|consen 243 AVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---EPTSSRPHEEPVTGLSLHPTGEYLL 319 (506)
T ss_pred eEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc---CccccccccccceeeeeccCCcEEE
Confidence 3445666778899999999999999999999999999999999999986553 3355678999999999999999999
Q ss_pred EEeCCCeEEEEECCCCcEEEEeCC--CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434 284 TCGNAEVLKLWDVETGICKHTFGD--HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV 361 (517)
Q Consensus 284 s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 361 (517)
+++.||+..+.|+++|.++..... ..-.+++.+|+|||..|.+|+.||. +.+||+.......-...|.++|..++|
T Consensus 320 sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~--vkiwdlks~~~~a~Fpght~~vk~i~F 397 (506)
T KOG0289|consen 320 SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGV--VKIWDLKSQTNVAKFPGHTGPVKAISF 397 (506)
T ss_pred EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCce--EEEEEcCCccccccCCCCCCceeEEEe
Confidence 999999999999999998876644 3456899999999999999999999 778888765544444457789999999
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC-CCCccceEEeCccc
Q 042434 362 TPDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVA-GKWEKPFKYTGHSQ 437 (517)
Q Consensus 362 ~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~ 437 (517)
+.+|-++++++.|+.|++||++..+ ........++.++.|.+.|.+++.++.+=.|++++-. ..|.....+..|.+
T Consensus 398 sENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg 477 (506)
T KOG0289|consen 398 SENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSG 477 (506)
T ss_pred ccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccc
Confidence 9999999999999999999999876 3333445579999999999999999777777777743 34566666666664
Q ss_pred CceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434 438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNR 468 (517)
Q Consensus 438 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 468 (517)
. ...+.|.....++++++.|..++++.+
T Consensus 478 ~---st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 478 L---STGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred c---cceeeecccceEEeeccchhheEEeec
Confidence 3 345556788899999999999888754
No 103
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=2.2e-26 Score=206.46 Aligned_cols=282 Identities=16% Similarity=0.185 Sum_probs=231.6
Q ss_pred cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEecc--CCCCEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 042434 220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRS--HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE 297 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 297 (517)
.|..-|.++.+|...+++.||+. |.|+|||+.......++..+.. ..+.|.++...|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 58999999999999999999986 7899999965443334443332 35789999999999999999999999999997
Q ss_pred CCcEEE--EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC
Q 042434 298 TGICKH--TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK 375 (517)
Q Consensus 298 ~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 375 (517)
...... .+....-...+++.+||.+..+++..||. |.+||+.++.+.....++...+.|+.+++||..|.+|+-|.
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGn--I~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGN--IAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCc--EEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 665432 33333456778999999999999999999 88999998776655555657899999999999999999999
Q ss_pred cEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE
Q 042434 376 DIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI 454 (517)
Q Consensus 376 ~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 454 (517)
+|+.||++++. .........|.++..+|++.++++|..++.+.+...... ....+.-|.. ++-++.|.+-|+++
T Consensus 574 tvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp--~kyqlhlheS---cVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP--EKYQLHLHES---CVLSLKFAYCGKWF 648 (705)
T ss_pred ceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc--cceeeccccc---EEEEEEecccCcee
Confidence 99999999887 445556678999999999999999999999988887543 2233333333 35556668999999
Q ss_pred EEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 455 ASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 455 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
++.+.|.-+..|...-|..+...+ ..+.|.++..+.|. ++++|||.|....+|.+
T Consensus 649 vStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~dd-kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDD-KYIVTGSGDKKATVYEV 703 (705)
T ss_pred eecCchhhhhhccCccccceeecc-ccCcceeeeeccCc-eEEEecCCCcceEEEEE
Confidence 999999999999999898888776 46789999999998 79999999998888865
No 104
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=199.28 Aligned_cols=286 Identities=15% Similarity=0.178 Sum_probs=224.8
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCC-eEEEEeCCCeEEEEECCCC
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT-KLLTCGNAEVLKLWDVETG 299 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~ 299 (517)
..+.|+++.|+|....|.+|+.||+++||.++.. ....+..+.--..+|.+.+|.|+|. .+++++....+..||+.+.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk-~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGK-VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCc-cChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 3578999999999999999999999999999643 3345566666788999999999998 8899999999999999988
Q ss_pred cEEEE--eCCC-CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccCCCEEEEEeCCC
Q 042434 300 ICKHT--FGDH-GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPDGENLISVLSDK 375 (517)
Q Consensus 300 ~~~~~--~~~~-~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 375 (517)
+..+. ..++ ...+.....++++++|+..+..|. |.+....++... .+... +.|..++|+.+++.|++++.+|
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~--I~lLhakT~eli~s~Kie--G~v~~~~fsSdsk~l~~~~~~G 366 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH--IHLLHAKTKELITSFKIE--GVVSDFTFSSDSKELLASGGTG 366 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCce--EEeehhhhhhhhheeeec--cEEeeEEEecCCcEEEEEcCCc
Confidence 75442 2233 345677788999999999999999 776666554432 23222 4799999999999999999999
Q ss_pred cEEEEECCCce-EEeeccCC--CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC--CccceEEeCcccCceEEEeecCCCC
Q 042434 376 DIRILNLGTYA-ERVISEEH--PITSLSVSVDCKNFIVNLNSQEIHMWDVAGK--WEKPFKYTGHSQNKYVIRSCFGGLD 450 (517)
Q Consensus 376 ~i~i~d~~~~~-~~~~~~~~--~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~ 450 (517)
.|.+||++... .......+ .-++++.++++.++++|+..|.|.|||..+. ...+........-.+.|+.+.|++|
T Consensus 367 eV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred eEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 99999999987 33333333 4577888899999999999999999997542 1122223333344566888899999
Q ss_pred CcEEEEecC--CCcEEEEecCCCceeEEecCC---CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 451 GTFIASGSE--NSQIYIWNRRNSKPIEILSGH---SMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 451 ~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~h---~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
+..||.+|. +..+++-.+.+......++.. -+.|+|++|+|.+ .++|.|..+|.|.+|.+.
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s-G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS-GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC-ceEEeecCCCceeeEeec
Confidence 999988875 568999998877766666543 3578999999998 699999999999999875
No 105
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=4.7e-27 Score=205.88 Aligned_cols=260 Identities=17% Similarity=0.245 Sum_probs=211.8
Q ss_pred cccccCCCcccccCCCcc--cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEE
Q 042434 196 AISLYEDHCCGRDQIPTE--TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFV 273 (517)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l 273 (517)
+...++..+..|+..+.+ .+.+|.|..++|+++.|.++++++++++.|+.+++|++... ....++.+|++.|+++
T Consensus 191 atgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~---r~~~TLsGHtdkVt~a 267 (459)
T KOG0288|consen 191 ATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL---RLRHTLSGHTDKVTAA 267 (459)
T ss_pred hhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch---hhhhhhcccccceeee
Confidence 344444455566666665 78889999999999999999999999999999999999544 6778999999999999
Q ss_pred EECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCC
Q 042434 274 AWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRI 353 (517)
Q Consensus 274 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~ 353 (517)
.|......+++|+.|.+|++||+....|.+++ -....+..|..+ ...+++|-.|++ |..||.++.........+
T Consensus 268 k~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~-l~~S~cnDI~~~--~~~~~SgH~Dkk--vRfwD~Rs~~~~~sv~~g- 341 (459)
T KOG0288|consen 268 KFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV-LPGSQCNDIVCS--ISDVISGHFDKK--VRFWDIRSADKTRSVPLG- 341 (459)
T ss_pred hhhccccceeeccccchhhhhhhhhhheeccc-cccccccceEec--ceeeeecccccc--eEEEeccCCceeeEeecC-
Confidence 99988777999999999999999999888876 334445556555 567889999999 888997754443333333
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEECCCceEE-e-----eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 042434 354 PKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER-V-----ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE 427 (517)
Q Consensus 354 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~-----~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~ 427 (517)
+.|+++..++++..+++++.|.++.+.|+++.... . +...+..+.+.|||++.|+++|+.||.|++|++.++ +
T Consensus 342 g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-K 420 (459)
T KOG0288|consen 342 GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-K 420 (459)
T ss_pred cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-e
Confidence 38999999999999999999999999999998722 2 123446899999999999999999999999999887 5
Q ss_pred cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEE
Q 042434 428 KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIW 466 (517)
Q Consensus 428 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 466 (517)
....+.....+ ..|.++.|+|.|.++++++.++.+.+|
T Consensus 421 lE~~l~~s~s~-~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 421 LEKVLSLSTSN-AAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEEEeccCCCC-cceEEEEEcCCCchhhcccCCcceEec
Confidence 55555443332 257888889999999999999999999
No 106
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.5e-26 Score=194.11 Aligned_cols=250 Identities=20% Similarity=0.308 Sum_probs=194.2
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC------------C------cEEEEeCCCCCceEEEEEeCCCC
Q 042434 261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET------------G------ICKHTFGDHGFIVSSCAWFPDSK 322 (517)
Q Consensus 261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~------------~------~~~~~~~~~~~~v~~i~~~~~~~ 322 (517)
..+..|..++.+.+|+|||.++++|+.|..|+|.|++. | -.++++-.|...|.++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 45678999999999999999999999999999999861 1 24567778999999999999999
Q ss_pred eEEEeeCCCceeEEEEeCCC----CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEE-----eeccC
Q 042434 323 RLVCGSSDTEKGIFMCDCDG----NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER-----VISEE 393 (517)
Q Consensus 323 ~l~~~~~d~~v~i~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~ 393 (517)
.|++|+.|++ |.++|... +..+.+...+ +|.++.|+|.|.++++|.....+++||+.+.+.. ...|.
T Consensus 186 ILiS~srD~t--vKlFDfsK~saKrA~K~~qd~~--~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 186 ILISGSRDNT--VKLFDFSKTSAKRAFKVFQDTE--PVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred eEEeccCCCe--EEEEecccHHHHHHHHHhhccc--eeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 9999999999 55555443 2223333333 7999999999999999999999999999998732 23567
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce
Q 042434 394 HPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP 473 (517)
Q Consensus 394 ~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 473 (517)
..|+++.+++.++..++++.||.|++||--.. ..+..+... .+...+.+..|..+|+|+++.+.|..+++|.+.++++
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~-rCv~t~~~A-H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSN-RCVRTIGNA-HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccH-HHHHHHHhh-cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 78999999999999999999999999997655 444444322 2233466777799999999999999999999999999
Q ss_pred eEEecCCC-----CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 474 IEILSGHS-----MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 474 ~~~~~~h~-----~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
+..+.|-. .--+...|+......|.---..+.+.-||.+++.+
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr 387 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR 387 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh
Confidence 99887531 11234556665533333333456677788776543
No 107
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.9e-26 Score=204.56 Aligned_cols=252 Identities=18% Similarity=0.284 Sum_probs=202.5
Q ss_pred ccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-CeEEEE
Q 042434 207 RDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTC 285 (517)
Q Consensus 207 ~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~ 285 (517)
+........+++......|+++.|-.||++||+|...|.|+|+|..+ -..+..+.+|+.+|..+.|+|++ ..+++|
T Consensus 53 y~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~---r~iLR~~~ah~apv~~~~f~~~d~t~l~s~ 129 (487)
T KOG0310|consen 53 YSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS---RVILRQLYAHQAPVHVTKFSPQDNTMLVSG 129 (487)
T ss_pred EecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc---HHHHHHHhhccCceeEEEecccCCeEEEec
Confidence 34444556666778899999999999999999999999999999643 23456788999999999999965 567788
Q ss_pred eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccC
Q 042434 286 GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD 364 (517)
Q Consensus 286 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 364 (517)
+.|+.+++||+.+......+.+|+..|.|.+|+|. +..+++|+.||. |..||.+..........+..+|..+.+-|.
T Consensus 130 sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~--vrl~DtR~~~~~v~elnhg~pVe~vl~lps 207 (487)
T KOG0310|consen 130 SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK--VRLWDTRSLTSRVVELNHGCPVESVLALPS 207 (487)
T ss_pred CCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce--EEEEEeccCCceeEEecCCCceeeEEEcCC
Confidence 88999999999999876688999999999999995 558999999999 677777654333344444458999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceE
Q 042434 365 GENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441 (517)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 441 (517)
|..+++++. ..+++||+.++. .....|...|+|+.+..++..|++++-|+.+++||+.+- +.+..+.-.. +
T Consensus 208 gs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~-Kvv~s~~~~~-p--- 281 (487)
T KOG0310|consen 208 GSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY-KVVHSWKYPG-P--- 281 (487)
T ss_pred CCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce-EEEEeeeccc-c---
Confidence 999988764 569999998655 233448889999999999999999999999999996443 5554444322 2
Q ss_pred EEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 442 IRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 442 i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
+-.+..+|++..++.|..||.+.+-+..
T Consensus 282 vLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 282 VLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eeeEEecCCCceEEEecccceeeeehhh
Confidence 5556668999999999999988777543
No 108
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=3.2e-24 Score=200.49 Aligned_cols=271 Identities=14% Similarity=0.122 Sum_probs=196.6
Q ss_pred CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCeEEEEECCCCcEEEEeCCCCCce
Q 042434 234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWDVETGICKHTFGDHGFIV 312 (517)
Q Consensus 234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 312 (517)
+..+++++.|+.+++||..++. ....+..+. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~---~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE---VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-P 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc---eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-c
Confidence 3578899999999999997653 345555443 46789999999876 5667889999999999988877755433 5
Q ss_pred EEEEEeCCCCeEEEe-eCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEeCCC-cEEEEECCCceE-E
Q 042434 313 SSCAWFPDSKRLVCG-SSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVLSDK-DIRILNLGTYAE-R 388 (517)
Q Consensus 313 ~~i~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~-~ 388 (517)
..++|+|+++.++++ +.++. ++.||..+... ..+... ..+.+++|+|++..+++++.++ .+.+||..+... .
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~--l~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNL--VTVIDIETRKVLAEIPVG--VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCe--EEEEECCCCeEEeEeeCC--CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence 678999999977665 45777 88889876443 333322 2467899999999999888775 467789887662 2
Q ss_pred eeccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceEEeCccc----CceEEEeecCCCCCcEEEE-ecCCCc
Q 042434 389 VISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPFKYTGHSQ----NKYVIRSCFGGLDGTFIAS-GSENSQ 462 (517)
Q Consensus 389 ~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~-~~~dg~ 462 (517)
.......+..++|+|+++.+++++ .++.|.+||+.+. .....+..+.. .......+.++|+++++++ .+.++.
T Consensus 152 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~ 230 (300)
T TIGR03866 152 NVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR 230 (300)
T ss_pred EEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe
Confidence 233445567899999999886654 5899999999876 33333322111 0111122445899998654 345678
Q ss_pred EEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEe-eCCCcEEEeCCCCCCC
Q 042434 463 IYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASA-SDDHTIRIWGPCQSSE 516 (517)
Q Consensus 463 i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~-~~dg~v~iw~~~~~~~ 516 (517)
+.+||+.+++.+..+. +...+.+++|+|++ ..|+++ +.+|.|++||+.+++.
T Consensus 231 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 231 VAVVDAKTYEVLDYLL-VGQRVWQLAFTPDE-KYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred EEEEECCCCcEEEEEE-eCCCcceEEECCCC-CEEEEEcCCCCeEEEEECCCCcE
Confidence 9999999988876654 45679999999999 566654 6799999999998764
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=5.2e-25 Score=209.30 Aligned_cols=319 Identities=18% Similarity=0.231 Sum_probs=249.9
Q ss_pred hccccccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeE
Q 042434 183 SQIDSCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTL 259 (517)
Q Consensus 183 ~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~ 259 (517)
.++++|.-.|... ++++.++.....+.-..+.+..++.-.+.|+.++|..||+ .+|+|+..|.+.+||++.... .
T Consensus 203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl--~ 280 (910)
T KOG1539|consen 203 SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL--I 280 (910)
T ss_pred cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee--e
Confidence 4555555555444 6667777777677667778888886579999999999997 567777889999999974422 2
Q ss_pred EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc----EEEE-------------------------------
Q 042434 260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI----CKHT------------------------------- 304 (517)
Q Consensus 260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~------------------------------- 304 (517)
......|.+.|....|.|....+++++.|..+++|=.+++. .++.
T Consensus 281 ~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r 360 (910)
T KOG1539|consen 281 NVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLR 360 (910)
T ss_pred eeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchh
Confidence 23334677788888888887888888888777766332110 0000
Q ss_pred ------------------------------------------------------------------------------e-
Q 042434 305 ------------------------------------------------------------------------------F- 305 (517)
Q Consensus 305 ------------------------------------------------------------------------------~- 305 (517)
+
T Consensus 361 ~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~ 440 (910)
T KOG1539|consen 361 SFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD 440 (910)
T ss_pred hhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEec
Confidence 0
Q ss_pred ----CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee---CcCCCceEEEEEccCCCEEEEEeCCCcEE
Q 042434 306 ----GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR---GTRIPKVLDLAVTPDGENLISVLSDKDIR 378 (517)
Q Consensus 306 ----~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 378 (517)
+.....+++++.++.|++.+.|+..|. |-.+++..+..+.-. ..+.++|+.++...-++.+++++.+|.+.
T Consensus 441 ~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~--Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilk 518 (910)
T KOG1539|consen 441 PKRFKKDDINATAVCVSFCGNFVFIGYSKGT--IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILK 518 (910)
T ss_pred CccccccCcceEEEEEeccCceEEEeccCCe--EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEE
Confidence 001255778888888888888888888 777777755544333 35567899999999999999999999999
Q ss_pred EEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434 379 ILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG 457 (517)
Q Consensus 379 i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 457 (517)
+||..+.. .........+..+..+.....++++..|-.|.++|..+. ..++.+.+|... ++...|||||++|+++
T Consensus 519 fw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nr---itd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 519 FWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR-KVVREFWGHGNR---ITDMTFSPDGRWLISA 594 (910)
T ss_pred EEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh-hhhHHhhccccc---eeeeEeCCCCcEEEEe
Confidence 99999877 555667788999999999999999999999999999887 788899999887 6677779999999999
Q ss_pred cCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCC-CcEEEeCC
Q 042434 458 SENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDD-HTIRIWGP 511 (517)
Q Consensus 458 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d-g~v~iw~~ 511 (517)
+.|++|++||+.++.++-.+. -..+++++.|+|+| .+|||...| .-|++|.-
T Consensus 595 smD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPng-D~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 595 SMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNG-DFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCC-CEEEEEEecCceEEEEEc
Confidence 999999999999999998876 46889999999999 799999988 67999963
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.3e-25 Score=210.62 Aligned_cols=274 Identities=18% Similarity=0.251 Sum_probs=215.2
Q ss_pred ccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 042434 219 TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET 298 (517)
Q Consensus 219 ~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 298 (517)
.+|++.-+.++|.|+|.+|++++.||.|++|+..... ....++..+...|.+++.. +.+|++|+.+++|.+|.+.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~--e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE--EEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc--cCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 4699999999999999999999999999999986552 1112333377778887764 56999999999999999999
Q ss_pred CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEE
Q 042434 299 GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIR 378 (517)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 378 (517)
++.-..+.....++.+++++.+|++++.|+.|-. |.+.+............+.++|.++.++|.+++|++.+.||.|+
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~--vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~ 163 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTA--VKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQ 163 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCcee--EEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEE
Confidence 8876666677889999999999999999999988 66666654433333444557999999999999999999999999
Q ss_pred EEECCCceEE-ee---------ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCC
Q 042434 379 ILNLGTYAER-VI---------SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGG 448 (517)
Q Consensus 379 i~d~~~~~~~-~~---------~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s 448 (517)
+||+.++... .. .....+..++|+|+|..+++...|+.|++|+..+. .....+........ +..+.|+
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w-e~~f~Lr~~~~ss~-~~~~~ws 241 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW-ELQFKLRDKLSSSK-FSDLQWS 241 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc-eeheeecccccccc-eEEEEEc
Confidence 9999887611 11 11345778999999999999999999999997654 66666665444333 6677889
Q ss_pred CCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCc
Q 042434 449 LDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHT 505 (517)
Q Consensus 449 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~ 505 (517)
|+|.|||+++.||.|.|||+.+... ......|.+++|.|+.+ .+-.-..-|.
T Consensus 242 PnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n-~it~~~~~g~ 293 (933)
T KOG1274|consen 242 PNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNAN-AITLITALGT 293 (933)
T ss_pred CCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCC-eeEEEeeccc
Confidence 9999999999999999999998222 22357899999999984 4433333333
No 111
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=5.3e-25 Score=184.85 Aligned_cols=288 Identities=19% Similarity=0.292 Sum_probs=222.3
Q ss_pred eccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeee------------EEEEeccCCCCEEEEEECC-CCCeEE
Q 042434 218 LTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLT------------LKHTLRSHQNPVSFVAWSP-DDTKLL 283 (517)
Q Consensus 218 l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~------------~~~~~~~h~~~v~~l~~s~-~~~~l~ 283 (517)
...|.+.|+++...+ .|+|+++|+.||.|.|||++.....+ ....-.+|.-.|.++.|-| |...+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 345999999999988 79999999999999999997543111 0111246788999999999 556788
Q ss_pred EEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC---CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEE
Q 042434 284 TCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD---SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLA 360 (517)
Q Consensus 284 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~ 360 (517)
+++.|.+++|||..+-+....| ...+.|.+-+++|- .-++++|..+-. |.+.|+..........+|.+.|.++.
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~--VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQ--VRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred cccccceEEEeecccceeeEEe-ecCceeehhhcChhhhcceEEEEecCCCc--EEEEeccCCcceeeeccccCceEEEE
Confidence 8899999999999998888887 45677888889883 336677777766 88888886665555555557999999
Q ss_pred EccCCCE-EEEEeCCCcEEEEECCCce-----------------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434 361 VTPDGEN-LISVLSDKDIRILNLGTYA-----------------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV 422 (517)
Q Consensus 361 ~~~~~~~-l~~~~~dg~i~i~d~~~~~-----------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~ 422 (517)
|+|...+ |++|+.||.|++||++... .....|.+.+..++|+.++.++++++.|..+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 9998885 6789999999999997542 113346668999999999999999999999999999
Q ss_pred CCCCccceEEeC--ccc---CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEE
Q 042434 423 AGKWEKPFKYTG--HSQ---NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKML 497 (517)
Q Consensus 423 ~~~~~~~~~~~~--~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l 497 (517)
..+......+.. |.. ....+. +.+...++---.++.+.++++-.|..+..+..|-..|.+.++.|+- ...
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~~~----~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~f-q~~ 350 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVHIQ----SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDF-EQC 350 (397)
T ss_pred ccCcccccccccccccccccceEEEe----ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCch-hhh
Confidence 776444333321 111 111122 2233344444456899999999999999999999999999999998 688
Q ss_pred EEeeCCCcEEEeCCCC
Q 042434 498 ASASDDHTIRIWGPCQ 513 (517)
Q Consensus 498 ~s~~~dg~v~iw~~~~ 513 (517)
.+|+.|+.|..|-+.-
T Consensus 351 ~tg~~d~ni~~w~p~l 366 (397)
T KOG4283|consen 351 FTGDMNGNIYMWSPAL 366 (397)
T ss_pred hccccCCccccccccc
Confidence 9999999999998743
No 112
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.4e-24 Score=173.31 Aligned_cols=252 Identities=18% Similarity=0.206 Sum_probs=197.0
Q ss_pred cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC--eeeEEEEeccCCCCEEEEEECCC----CCeEEEE
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS--KLTLKHTLRSHQNPVSFVAWSPD----DTKLLTC 285 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~h~~~v~~l~~s~~----~~~l~s~ 285 (517)
.-..+.-+.|++.|+|.+|||+|.++|+|+.|.+|++..++... .......+..|.+.|..++|..+ +..|+++
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred eEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 34455567899999999999999999999999999998765322 12233457789999999999643 4667776
Q ss_pred eC-CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeee------CcCCCceE
Q 042434 286 GN-AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWR------GTRIPKVL 357 (517)
Q Consensus 286 ~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~------~~~~~~i~ 357 (517)
+. |..|.+-|..+|+..+.+.+|.+.|.++- +-++-.+++|+.|.+ |..||++-+ .+.... +...+.|.
T Consensus 159 gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdkt--irfwdlrv~~~v~~l~~~~~~~glessava 235 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKT--IRFWDLRVNSCVNTLDNDFHDGGLESSAVA 235 (350)
T ss_pred CCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCce--EEEEeeeccceeeeccCcccCCCcccceeE
Confidence 54 66888889999999999999999998862 335889999999999 677776632 222221 12235799
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---ccceEE
Q 042434 358 DLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW---EKPFKY 432 (517)
Q Consensus 358 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~ 432 (517)
+++..|.|+++++|-.|....+||++.+. .....|...|.++.|+|...++++++.|..|++-|+.+.. ......
T Consensus 236 av~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 236 AVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred EEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence 99999999999999999999999999988 6667788899999999999999999999999999997641 223333
Q ss_pred eCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 433 TGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 433 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
..|... .| .+.|+|..--+++.+.|.++.+|-+.
T Consensus 316 ~ehkdk--~i-~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 AEHKDK--AI-QCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EeccCc--eE-EEEecCccceeeeccCcceEEEeccC
Confidence 444443 23 34458888888999999999999753
No 113
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.1e-25 Score=189.13 Aligned_cols=267 Identities=18% Similarity=0.299 Sum_probs=215.2
Q ss_pred CCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEe------cCC--------------------
Q 042434 201 EDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKV------LED-------------------- 254 (517)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~------~~~-------------------- 254 (517)
+...+.|....+.|+..+.||.+.|+|+.|++.+.++++++.|++..||.. ...
T Consensus 169 DhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~ 248 (481)
T KOG0300|consen 169 DHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNR 248 (481)
T ss_pred ccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccc
Confidence 344566777788999999999999999999999999999999999999972 110
Q ss_pred ----------Ce-eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCe
Q 042434 255 ----------SK-LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKR 323 (517)
Q Consensus 255 ----------~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 323 (517)
.. -.++..+.+|.+.|.+..|-..|+.+++++.|.+..+||+++|..+..+.+|....+.++-+|..++
T Consensus 249 d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrL 328 (481)
T KOG0300|consen 249 DTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRL 328 (481)
T ss_pred ccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceE
Confidence 00 2345678899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCceeEEEEeCC--CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEE
Q 042434 324 LVCGSSDTEKGIFMCDCD--GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSL 399 (517)
Q Consensus 324 l~~~~~d~~v~i~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~ 399 (517)
+++++.|.+ +.+||.+ -..+..+.++. ..|++..|..+. .+++|+.|.+|++||+++.. ...+....+++.+
T Consensus 329 VvTsSrDtT--FRLWDFReaI~sV~VFQGHt-dtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRv 404 (481)
T KOG0300|consen 329 VVTSSRDTT--FRLWDFREAIQSVAVFQGHT-DTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRV 404 (481)
T ss_pred EEEeccCce--eEeccchhhcceeeeecccc-cceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCcccee
Confidence 999999999 5555554 34455555555 589999998764 67899999999999999877 5667778899999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCC--cEEEEecCCCcEEEEecCCC
Q 042434 400 SVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG--TFIASGSENSQIYIWNRRNS 471 (517)
Q Consensus 400 ~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~ 471 (517)
+++..+..++.-..+..|++||+.+.......-.........+.|++|..+. .-|++++.|..+.-|.+...
T Consensus 405 avs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 405 AVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9999988999999999999999977522111111222233446666665432 34788899999999998754
No 114
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=7e-25 Score=194.86 Aligned_cols=300 Identities=16% Similarity=0.248 Sum_probs=226.1
Q ss_pred cccEEEeccccCcEEEEEECCCC--CEEEEeeCCCcEEEEEecC-CCeeeEEEEeccCCCCEEEEEECCCC-CeEEEEeC
Q 042434 212 TETVQILTEHKNEVWFVQFSNNG--EYLASSSSDCSAIIWKVLE-DSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGN 287 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~--~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~ 287 (517)
.....+.+-|.++|++++|+|.. +.+|+|..-|.|-+||+.+ .....-+..+..|..+|.++.|+|.+ ..+++.|+
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc
Confidence 44556777899999999999944 6899999999999999942 22334556788899999999999954 78999999
Q ss_pred CCeEEEEECCCCcEEE--EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCC
Q 042434 288 AEVLKLWDVETGICKH--TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG 365 (517)
Q Consensus 288 dg~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 365 (517)
||+|+.-|++++.... ........+.++.|+.+...++++..=|...++.....+.....+..+.. .|.+++++|-.
T Consensus 256 DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~ 334 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-KITSVALNPVC 334 (498)
T ss_pred CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-ccceeecCCCC
Confidence 9999999998764333 33335567788889988888888888886334444444555555555554 89999999976
Q ss_pred C-EEEEEeCCCcEEEEECCCce------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC---CCCccceEEeCc
Q 042434 366 E-NLISVLSDKDIRILNLGTYA------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVA---GKWEKPFKYTGH 435 (517)
Q Consensus 366 ~-~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~---~~~~~~~~~~~~ 435 (517)
. ++++++.|++.+|||++... .....|...|.+..|||.+..+++.+.|..|++||.. .. ........|
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~-~~p~~~I~H 413 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK-DEPLGTIPH 413 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc-CCccceeec
Confidence 5 78899999999999998754 3455788899999999999889999999999999984 22 222222223
Q ss_pred ccC----ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCC-CeeEE-EecCCCCcEEEEeeCCCcEEEe
Q 042434 436 SQN----KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSM-TVNCV-SWNPKRPKMLASASDDHTIRIW 509 (517)
Q Consensus 436 ~~~----~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~v-~~~~~~~~~l~s~~~dg~v~iw 509 (517)
... ...+. ..|.|+..++++|-.-..|-|+|-..++.+..+..... .|.++ .|+|-+..+++-++..|.|+||
T Consensus 414 n~~t~RwlT~fK-A~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 414 NNRTGRWLTPFK-AAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred cCcccccccchh-heeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 221 12233 34589999999999999999999999988888755433 55554 8999883355555678899999
Q ss_pred CCCCC
Q 042434 510 GPCQS 514 (517)
Q Consensus 510 ~~~~~ 514 (517)
.-+.+
T Consensus 493 t~k~~ 497 (498)
T KOG4328|consen 493 TNKKS 497 (498)
T ss_pred ecCCC
Confidence 76543
No 115
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.4e-25 Score=186.74 Aligned_cols=243 Identities=17% Similarity=0.225 Sum_probs=191.3
Q ss_pred cCCCCEEEEEECC-CCCeEEEEeCCCeEEEEECCC-CcEE-EEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC
Q 042434 265 SHQNPVSFVAWSP-DDTKLLTCGNAEVLKLWDVET-GICK-HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341 (517)
Q Consensus 265 ~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~ 341 (517)
...+.|.+++||| ...+++++|.||+|++|+++. |..+ +....|.++|.+++|+.||..+++|+.|+. +.+||+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~--~k~wDL~ 102 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ--AKLWDLA 102 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCc--eEEEEcc
Confidence 4568899999999 556677899999999999977 3433 334578999999999999999999999999 8899999
Q ss_pred CCeeEeeeCcCCCceEEEEEccCCC--EEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434 342 GNEIKAWRGTRIPKVLDLAVTPDGE--NLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIH 418 (517)
Q Consensus 342 ~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 418 (517)
..+......|. ++|.++.|-+... .|++|+.|++|+.||++... .........+.++..- ...++++..+..|.
T Consensus 103 S~Q~~~v~~Hd-~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r~i~ 179 (347)
T KOG0647|consen 103 SGQVSQVAAHD-APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAERHIA 179 (347)
T ss_pred CCCeeeeeecc-cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecCCcEE
Confidence 88777766655 5899999987766 89999999999999999876 4455555666665543 45788999999999
Q ss_pred EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC--ceeEEecCCCC---------CeeEE
Q 042434 419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS--KPIEILSGHSM---------TVNCV 487 (517)
Q Consensus 419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~---------~v~~v 487 (517)
+|++++.......... .-.+.+++++.-.|....+.|+-+|.+.|..+..+ +.-.+++.|.. .|++|
T Consensus 180 vynL~n~~te~k~~~S--pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIES--PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred EEEcCCCcchhhhhcC--cccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 9999876333333222 23455666665677777799999999999988876 44456666652 58899
Q ss_pred EecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 488 SWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 488 ~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
+|+|.. ..|+|+|.||++.+||-....
T Consensus 258 ~FhP~h-gtlvTaGsDGtf~FWDkdar~ 284 (347)
T KOG0647|consen 258 AFHPVH-GTLVTAGSDGTFSFWDKDART 284 (347)
T ss_pred Eeeccc-ceEEEecCCceEEEecchhhh
Confidence 999988 689999999999999976544
No 116
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.5e-25 Score=200.39 Aligned_cols=251 Identities=19% Similarity=0.292 Sum_probs=193.9
Q ss_pred EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc----EEEEeC-CCCCceEEEEEeCCCCeEEEeeCCCcee
Q 042434 260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI----CKHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKG 334 (517)
Q Consensus 260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~ 334 (517)
...+.+|+..|.++++.|.|..+++|+.|-+|++||+.... ..+.+. .....|.++.|++.|..|++.+....
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq-- 237 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ-- 237 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc--
Confidence 34678899999999999999999999999999999996542 122222 34678999999999999998888777
Q ss_pred EEEEeCCCCeeEeee------------CcCCCceEEEEEccCCC-EEEEEeCCCcEEEEECCCce--EEee------ccC
Q 042434 335 IFMCDCDGNEIKAWR------------GTRIPKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYA--ERVI------SEE 393 (517)
Q Consensus 335 i~~~~~~~~~~~~~~------------~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~--~~~~------~~~ 393 (517)
..++|-.|..+..+. .+|...++|.+|+|+.+ .+++++.||++++||+...+ ..++ ...
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 777787776655442 24556789999999765 78999999999999998765 2222 223
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc-eEE-eCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434 394 HPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP-FKY-TGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS 471 (517)
Q Consensus 394 ~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 471 (517)
-++++++|+++|+.+++|+.||.|.+|+..+....+ ..+ ..|.. ...|+++.||+||++|++-+.|+++++||++..
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~-g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP-GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC-CCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 478999999999999999999999999985542222 222 23433 345888888999999999999999999999875
Q ss_pred -ceeEEecCC--CCCeeEEEecCCCCcEEEEeeC------CCcEEEeCCCCC
Q 042434 472 -KPIEILSGH--SMTVNCVSWNPKRPKMLASASD------DHTIRIWGPCQS 514 (517)
Q Consensus 472 -~~~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~------dg~v~iw~~~~~ 514 (517)
+++.+..+- .-+-+.++|+|+. .+++||+. .|++.+||..+-
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~ 447 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTL 447 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccce
Confidence 456555442 3456789999999 78988874 467888886553
No 117
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4e-26 Score=196.87 Aligned_cols=243 Identities=16% Similarity=0.233 Sum_probs=198.2
Q ss_pred EEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE
Q 042434 259 LKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337 (517)
Q Consensus 259 ~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~ 337 (517)
.+..+.+|.+.|.|++=+|.. ..+++|+.||.|++||+.+..+..++..|.+.|..+++.. ..+++++.|.+ |..
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKt--vK~ 133 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKT--VKQ 133 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcc--eee
Confidence 445678999999999999987 7899999999999999999999999999999999999986 78999999999 666
Q ss_pred EeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCE-EEEEeCC
Q 042434 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKN-FIVNLNS 414 (517)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~-l~~~~~d 414 (517)
|...+.....+.+.. .+..+.-+..+..+++++. .|.|||..... .........+.++.|+|.... |+++..|
T Consensus 134 wk~~~~p~~tilg~s--~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 134 WKIDGPPLHTILGKS--VYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred eeccCCcceeeeccc--cccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 666666666665544 5777777777778887765 48999986544 444555667999999997655 5556689
Q ss_pred CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC-ceeEEecCCCCCeeEEEecCCC
Q 042434 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS-KPIEILSGHSMTVNCVSWNPKR 493 (517)
Q Consensus 415 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~ 493 (517)
+.|.+||++.. .+..+..-... ...++|+|.+--+++|++|..++.||++.. +++....+|.+.|.+|+|+|.|
T Consensus 210 rsIvLyD~R~~-~Pl~KVi~~mR----TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG 284 (433)
T KOG0268|consen 210 RSIVLYDLRQA-SPLKKVILTMR----TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG 284 (433)
T ss_pred CceEEEecccC-Cccceeeeecc----ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc
Confidence 99999999887 44444332222 335566898888999999999999999875 5888889999999999999999
Q ss_pred CcEEEEeeCCCcEEEeCCCCCC
Q 042434 494 PKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 494 ~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
.-++|||.|.+|+||.++.+.
T Consensus 285 -~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 285 -QEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred -chhccccccceEEEeecCCCc
Confidence 789999999999999998764
No 118
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.1e-24 Score=193.79 Aligned_cols=245 Identities=22% Similarity=0.345 Sum_probs=202.4
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEE----E---e-----------CCCCCceEEEEEeCCCC
Q 042434 261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH----T---F-----------GDHGFIVSSCAWFPDSK 322 (517)
Q Consensus 261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----~---~-----------~~~~~~v~~i~~~~~~~ 322 (517)
..+..|.-+|.+++++|++++.++++.+|+|.-|++.+|+... + . +.|...+.+++.++||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 3455689999999999999999999999999999998886431 1 0 25777899999999999
Q ss_pred eEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEE
Q 042434 323 RLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLS 400 (517)
Q Consensus 323 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~ 400 (517)
+|++|+.|.. |.+|+.++........+|.+.|.+++|-.....+++++.|..+++|++.... ...++|...|..+.
T Consensus 216 ylatgg~d~~--v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRH--VQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCce--EEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 9999999998 7788887644444444555799999999988999999999999999998877 77888999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-C
Q 042434 401 VSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-G 479 (517)
Q Consensus 401 ~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~ 479 (517)
...-++.+-+|+.|.++++|++.. .....+.++... +.|+++ -+...+++|+.||.|.+|++.+.+++.+.. +
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~s---idcv~~-In~~HfvsGSdnG~IaLWs~~KKkplf~~~~A 367 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGS---IDCVAF-INDEHFVSGSDNGSIALWSLLKKKPLFTSRLA 367 (479)
T ss_pred hhcccceEEeccccceeEEEeccc--cceeeeeCCCCC---eeeEEE-ecccceeeccCCceEEEeeecccCceeEeecc
Confidence 999999999999999999999955 344455566544 333332 356689999999999999999999888764 1
Q ss_pred C-----------CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 480 H-----------SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 480 h-----------~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
| ...|++++..|.. .++++|+.+|.|++|.+..+
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCC
Confidence 2 2279999999988 79999999999999999876
No 119
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.4e-24 Score=179.55 Aligned_cols=265 Identities=18% Similarity=0.307 Sum_probs=194.4
Q ss_pred eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEe-cCCCeeeEEEEeccCCCCEEEEEECC--CCCeEEEEeCCCeEEEE
Q 042434 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKV-LEDSKLTLKHTLRSHQNPVSFVAWSP--DDTKLLTCGNAEVLKLW 294 (517)
Q Consensus 218 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~-~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iw 294 (517)
-.+|.+-|.|+.|.+.|+.+|||+.|++|+|||. ...+++......+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 3579999999999999999999999999999995 44466778888999999999999975 48999999999999999
Q ss_pred ECCC------C---cEEEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCC-CeeEe------------eeC
Q 042434 295 DVET------G---ICKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDG-NEIKA------------WRG 350 (517)
Q Consensus 295 d~~~------~---~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~-~~~~~------------~~~ 350 (517)
.-.. + ....++......|+.+.|.|. |-.+++++.||.++|| +... ..+.. ..+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY--EA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY--EAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE--ecCCccccccchhhhhhhhccCCcc
Confidence 7521 1 223455677889999999995 7789999999996555 3221 11111 112
Q ss_pred cCCCceEEEEEccC---CCEEEEEeCC-----CcEEEEECCCce------EEeeccCCCeeEEEEcCCC----CEEEEEe
Q 042434 351 TRIPKVLDLAVTPD---GENLISVLSD-----KDIRILNLGTYA------ERVISEEHPITSLSVSVDC----KNFIVNL 412 (517)
Q Consensus 351 ~~~~~i~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~~----~~l~~~~ 412 (517)
.......|+.|+|. ..+|++|+.+ +.+.||...... .....+..+|+.++|.|+- ..+++++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee
Confidence 23346778888874 3477777766 478888765433 3344788899999999962 4588999
Q ss_pred CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCC
Q 042434 413 NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK 492 (517)
Q Consensus 413 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~ 492 (517)
.|| |+||.+......+.. .. +.+++.-+ ++ .-+.+..+.+|.+.|..+.|+-.
T Consensus 247 kDg-v~I~~v~~~~s~i~~----ee----------------~~~~~~~~-----~l-~v~~vs~~~~H~~~VWrv~wNmt 299 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEE----EE----------------VLAPDLMT-----DL-PVEKVSELDDHNGEVWRVRWNMT 299 (361)
T ss_pred cCc-EEEEEEeeccchhhh----hc----------------ccCCCCcc-----cc-ceEEeeeccCCCCceEEEEEeee
Confidence 999 999998653221100 00 00111111 11 12456778899999999999999
Q ss_pred CCcEEEEeeCCCcEEEeCCC
Q 042434 493 RPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 493 ~~~~l~s~~~dg~v~iw~~~ 512 (517)
| .+|++.|+||.||+|...
T Consensus 300 G-tiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 300 G-TILSSTGDDGCVRLWKAN 318 (361)
T ss_pred e-eEEeecCCCceeeehhhh
Confidence 9 799999999999999754
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=4.1e-24 Score=181.01 Aligned_cols=241 Identities=18% Similarity=0.237 Sum_probs=191.5
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee
Q 042434 266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI 345 (517)
Q Consensus 266 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~ 345 (517)
....|+++.|+|.++.|++++.||++++||+........+ .|..++.+++|.+ ...+++|+.||. |..+|..+...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~--vr~~Dln~~~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQ--VRRYDLNTGNE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCce--EEEEEecCCcc
Confidence 3678999999999999999999999999999888666566 7899999999986 668999999999 77777776555
Q ss_pred EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434 346 KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG 424 (517)
Q Consensus 346 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 424 (517)
..+..+ ...+.++..++....+++|+.|++|++||.+... .........|.++.. .+..|++|+.+..+.+||+++
T Consensus 88 ~~igth-~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTH-DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccC-CCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEccc
Confidence 544444 4589999999999999999999999999999744 334444556666655 567899999999999999987
Q ss_pred CCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC----ceeEEecCCC---------CCeeEEEecC
Q 042434 425 KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS----KPIEILSGHS---------MTVNCVSWNP 491 (517)
Q Consensus 425 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~---------~~v~~v~~~~ 491 (517)
.....+. ....-.+.++++..-|++.-.++++-||.|.+=.+... +.-..++.|. -+|++++|+|
T Consensus 165 ~~~~~q~--reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 165 LDEPFQR--RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccchhhh--ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 6333321 12333456777777788888999999999988666554 3445566664 3799999999
Q ss_pred CCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 492 KRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 492 ~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
-. ..|||||.||.|.+||+.+.+.
T Consensus 243 ~~-~tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 243 IH-GTFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred cc-ceEEecCCCceEEEccCcchhh
Confidence 97 6899999999999999988765
No 121
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.9e-25 Score=206.69 Aligned_cols=231 Identities=21% Similarity=0.245 Sum_probs=197.1
Q ss_pred CCCCeEEEEeCCCeEEEEECCCCc------EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC--eeEee
Q 042434 277 PDDTKLLTCGNAEVLKLWDVETGI------CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN--EIKAW 348 (517)
Q Consensus 277 ~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~ 348 (517)
|.+++|++||.||.|++|++.... .+.+++.|...|..++...+++.|+++|.|-+ |.+|+.... -....
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtT--VK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTT--VKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCce--EEEeecccCcchhHhh
Confidence 467789999999999999985432 46678899999999999999999999999999 666665532 22333
Q ss_pred eCcCCCceEEEEE-ccCCCEEEEEeCCCcEEEEECCCceE-------------EeeccCCCeeEEEEcCCCCEEEEEeCC
Q 042434 349 RGTRIPKVLDLAV-TPDGENLISVLSDKDIRILNLGTYAE-------------RVISEEHPITSLSVSVDCKNFIVNLNS 414 (517)
Q Consensus 349 ~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~-------------~~~~~~~~i~~~~~s~~~~~l~~~~~d 414 (517)
...|...|.|+++ .++...+++|+-|+.|.+||+.++.. ...++..++.+++..+.|..++.|+..
T Consensus 113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte 192 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE 192 (735)
T ss_pred hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc
Confidence 4445579999999 78888999999999999999986621 112566789999999999999999999
Q ss_pred CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCC
Q 042434 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRP 494 (517)
Q Consensus 415 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~ 494 (517)
+.+++||.++. ..+.++.||... ++++..++||..++++|.||+|++||+...+++.++..|...|+++..+|+-
T Consensus 193 k~lr~wDprt~-~kimkLrGHTdN---Vr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf- 267 (735)
T KOG0308|consen 193 KDLRLWDPRTC-KKIMKLRGHTDN---VRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSF- 267 (735)
T ss_pred cceEEeccccc-cceeeeeccccc---eEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCc-
Confidence 99999999998 788888899988 5555558999999999999999999999999999999999999999999998
Q ss_pred cEEEEeeCCCcEEEeCCCCC
Q 042434 495 KMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 495 ~~l~s~~~dg~v~iw~~~~~ 514 (517)
..+.+|+.||.|..=|+.+.
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ceEEecCCCCcEEecccCCc
Confidence 79999999999998888763
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1e-24 Score=194.48 Aligned_cols=271 Identities=17% Similarity=0.237 Sum_probs=210.6
Q ss_pred CEEEEeeC-CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceE
Q 042434 235 EYLASSSS-DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVS 313 (517)
Q Consensus 235 ~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 313 (517)
.|++++.. -..+.+|.+....... ...--.++|.+++-+|+|.+|+.|+..|.+++|.+.+|..+..+..|-..|+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~---q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~IT 127 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV---QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSIT 127 (476)
T ss_pred hheeeecccCccccccccCchhhhh---hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcccee
Confidence 56666643 4578899986433222 2223468899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCeEEEeeCCCceeEEEEeC--------CCCeeEeeeCcCCCceEEEEEccCC--CEEEEEeCCCcEEEEECC
Q 042434 314 SCAWFPDSKRLVCGSSDTEKGIFMCDC--------DGNEIKAWRGTRIPKVLDLAVTPDG--ENLISVLSDKDIRILNLG 383 (517)
Q Consensus 314 ~i~~~~~~~~l~~~~~d~~v~i~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~ 383 (517)
|+.|+.||.+|++|+.||.|.+|.... ...++..|..|. -+|+++...+.| .++++++.|.++++||+.
T Consensus 128 cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht-lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS 206 (476)
T KOG0646|consen 128 CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT-LSITDLQIGSGGTNARLYTASEDRTIKLWDLS 206 (476)
T ss_pred EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc-ceeEEEEecCCCccceEEEecCCceEEEEEec
Confidence 999999999999999999955543321 123344454444 489999887764 589999999999999999
Q ss_pred Cce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---------------ccceEEeCcccCceEEEeecC
Q 042434 384 TYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW---------------EKPFKYTGHSQNKYVIRSCFG 447 (517)
Q Consensus 384 ~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~---------------~~~~~~~~~~~~~~~i~~~~~ 447 (517)
.+. ......+..+.+++++|-++.+++|+.+|.|.+.++.... .....+.||... ..|+|+..
T Consensus 207 ~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~-~~ITcLai 285 (476)
T KOG0646|consen 207 LGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE-SAITCLAI 285 (476)
T ss_pred cceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC-cceeEEEE
Confidence 988 6667778899999999999999999999999998874321 122334555552 35788888
Q ss_pred CCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 448 GLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 448 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
+.||..|++|+.||.++|||+.+.++++++....++|+.+.+.|-.+..+..-+....+-.|+
T Consensus 286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~ 348 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPH 348 (476)
T ss_pred ecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchH
Confidence 999999999999999999999999999999877899999999765433333333333333343
No 123
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1.1e-23 Score=189.41 Aligned_cols=327 Identities=18% Similarity=0.231 Sum_probs=243.0
Q ss_pred HHHHHHHHhccccccCCCCCcccccc-CCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC
Q 042434 175 HLVETAVTSQIDSCQYHNSSVAISLY-EDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE 253 (517)
Q Consensus 175 ~l~~~~~~~q~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~ 253 (517)
.++++..+.-..+..|.++...+..- .+.+.+|..-..+..+....|.+.|.+++.-.+|.+|- |+.|+.|..||-.-
T Consensus 239 ~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y 317 (626)
T KOG2106|consen 239 GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNY 317 (626)
T ss_pred eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccc
Confidence 34455445445555666666644443 44455666655566666669999999999999998555 99999999998321
Q ss_pred CCe-------------------------------------eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434 254 DSK-------------------------------------LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV 296 (517)
Q Consensus 254 ~~~-------------------------------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 296 (517)
... .....+..+|......++.+|+.+.+++++.|+.+++|+
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~- 396 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN- 396 (626)
T ss_pred cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-
Confidence 100 001123457888999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434 297 ETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKD 376 (517)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 376 (517)
..+...+. ....++.|+.|+|.| .++.|+..|. .++.|..+..+...... ..++.++.|+|+|.++++|+.|+.
T Consensus 397 -~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~--w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 397 -DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATGR--WFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred -CCceeEEE-EecCceeEeeccCcc-eEEEeeccce--EEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe
Confidence 44444433 346778999999999 9999999998 88889888777766666 568999999999999999999999
Q ss_pred EEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCc---------------cc
Q 042434 377 IRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGH---------------SQ 437 (517)
Q Consensus 377 i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---------------~~ 437 (517)
|++|.+.... .....+..+|+.+.|++|++++.+.+.|-.|..|..... ........- ..
T Consensus 471 iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~-~~~ts~kDvkW~t~~c~lGF~v~g~s 549 (626)
T KOG2106|consen 471 IYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSEC-KQITSVKDVKWATYTCTLGFEVFGGS 549 (626)
T ss_pred EEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccC-cccceecceeeeeeEEEEEEEEeccc
Confidence 9999886644 222334489999999999999999999999999954321 111111100 11
Q ss_pred CceEEEeecCCCCCcEEEEecCCCcEEEEecCCC---ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS---KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 438 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
....+..++-+.+.+.+++|.+.|+|++|...-. .+...+.+|++.|++++|.-+. ..+++.+.|..|..|++
T Consensus 550 ~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 550 DGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred CCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCC-ceEEecCCCceEEEEEe
Confidence 1223444444667889999999999999985432 3556778999999999999887 56777779999999986
No 124
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.7e-23 Score=192.65 Aligned_cols=282 Identities=17% Similarity=0.205 Sum_probs=225.7
Q ss_pred eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCC-CCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFVAWSPDDTKLLTCGNAEVLKLWDV 296 (517)
Q Consensus 218 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 296 (517)
+.--..+|.+++||.+.+.||.+-.||.|.||++..+ +-....+.++. ..|.+++|+ ++..|++.+.+|.|.-||+
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~--w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN--WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCC--ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence 4445689999999999999999999999999999743 44445555554 679999999 5667889999999999999
Q ss_pred CCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE--eeeCcCCCceEEEEEccCCCEEEEEeCC
Q 042434 297 ETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK--AWRGTRIPKVLDLAVTPDGENLISVLSD 374 (517)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d 374 (517)
.+++....+....+.|++++.+|.+..++.|+.||. ++.++.....+. .......+.+.++.|+|++..+++|+.|
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGv--l~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGV--LYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecCCce--EEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 999999999999999999999999999999999995 777777655543 3333445789999999999999999999
Q ss_pred CcEEEEECCCceEEe------ec----cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEe
Q 042434 375 KDIRILNLGTYAERV------IS----EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS 444 (517)
Q Consensus 375 g~i~i~d~~~~~~~~------~~----~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~ 444 (517)
|.|++||..++.... .. ...-|.++.+- ....+++|...|.|.+||...+ .....+..|...+. +
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~g-TLiqS~~~h~adVl---~ 250 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFG-TLIQSHSCHDADVL---A 250 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCc-chhhhhhhhhccee---E
Confidence 999999999887322 11 11224555555 4467999999999999999877 67777777777644 4
Q ss_pred ecCCCCCcEEEEecCCCcEEEEecCCCce----eEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 445 CFGGLDGTFIASGSENSQIYIWNRRNSKP----IEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
+...+++.++++++.|+.|.-|...+++. ......|...|.+++..++ .+++||.|.++.+=...
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSR 319 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc---eEEecceeeEEEEcccc
Confidence 44478889999999999999998776533 2233468889999999875 69999999988875443
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=6.1e-23 Score=184.67 Aligned_cols=303 Identities=16% Similarity=0.231 Sum_probs=227.6
Q ss_pred cccCCCcccccCC-CcccEEEeccccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCC-CCEEEEE
Q 042434 198 SLYEDHCCGRDQI-PTETVQILTEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFVA 274 (517)
Q Consensus 198 ~~~~~~~~~~~~~-~~~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~l~ 274 (517)
....++....|+. ........+.....|..+.|+|.+. +++++ ..|.+..|+...+.-.+....+..++ ..|.|++
T Consensus 175 D~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~-Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~ 253 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITC-GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVT 253 (626)
T ss_pred cCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEe-CCceEEEEEccCCceEEEeeccccccceEEEEEE
Confidence 3334444433333 3344555566678889999999554 55555 45899999998776555555555443 5699999
Q ss_pred ECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE--------
Q 042434 275 WSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-------- 346 (517)
Q Consensus 275 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-------- 346 (517)
|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.++- |+.|.. |..||..-+.++
T Consensus 254 F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRk--i~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 254 FLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRK--IILWDDNYRKLRETELPEQF 329 (626)
T ss_pred EcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccce--EEeccccccccccccCchhc
Confidence 999885 78999999999999988887777779999999999999987655 999998 777764311111
Q ss_pred ----eeeC----------------------------cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeeccCC
Q 042434 347 ----AWRG----------------------------TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEH 394 (517)
Q Consensus 347 ----~~~~----------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 394 (517)
.... .+......++.+|+.+.+++++.|+.+++|+ ............
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d 408 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIED 408 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecC
Confidence 1100 1223455688899999999999999999999 333366667788
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC-ce
Q 042434 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS-KP 473 (517)
Q Consensus 395 ~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~ 473 (517)
+..++.|+|.| .+++|+..|...+.|..+. ..+... .. ...+.++.++|+|.++|.|+.|+.|++|.+... ..
T Consensus 409 ~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~---~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 409 PAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIH---TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred ceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEEE---ec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE
Confidence 99999999999 9999999999999999774 333222 22 334778888999999999999999999987654 33
Q ss_pred eEEe-cCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 474 IEIL-SGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 474 ~~~~-~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
.... +.|.++|+.+.|++|+ +++.+-+.|-.|..|....
T Consensus 483 y~r~~k~~gs~ithLDwS~Ds-~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 483 YSRVGKCSGSPITHLDWSSDS-QFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred EEEeeeecCceeEEeeecCCC-ceEEeccCceEEEEEcccc
Confidence 3322 2345899999999999 7999999999999995543
No 126
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=7.1e-24 Score=197.68 Aligned_cols=296 Identities=23% Similarity=0.345 Sum_probs=230.8
Q ss_pred cccEEEeccccCcEEEEEECCCCC---EEEEeeCCCcEEEEEecCCCe------------------eeEE----------
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGE---YLASSSSDCSAIIWKVLEDSK------------------LTLK---------- 260 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~---~l~t~~~dg~i~iw~~~~~~~------------------~~~~---------- 260 (517)
...+..+.||.+-|.+++|...+. +||++|.|..|+||.+.-... ....
T Consensus 181 f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e 260 (764)
T KOG1063|consen 181 FARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE 260 (764)
T ss_pred eeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence 456788999999999999988544 899999999999998743320 0111
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc--EE-----EEeCCCCCceEEEEEeCCCCeEEEeeCCCce
Q 042434 261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI--CK-----HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEK 333 (517)
Q Consensus 261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~-----~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v 333 (517)
..+.||++.|.++.|+|.+..|++++.|.++.+|...+.. -+ ....+.........|+|+++.+++-+..|.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg- 339 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG- 339 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc-
Confidence 2235999999999999999999999999999999876542 11 222344566899999999999999999998
Q ss_pred eEEEEeCCC---CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce------EEeeccCCCeeEEEEcCC
Q 042434 334 GIFMCDCDG---NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA------ERVISEEHPITSLSVSVD 404 (517)
Q Consensus 334 ~i~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~ 404 (517)
.+.|.... -.......+|...|.+++|+|.|.++++.+.|.+-|+|-.-..+ .....|+..++|+++-+.
T Consensus 340 -~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 340 -FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred -EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 77776332 12344456677799999999999999999999999998765332 233457788999999987
Q ss_pred CCEEEEEeCCCeEEEEEcCC------------------------------------------------------------
Q 042434 405 CKNFIVNLNSQEIHMWDVAG------------------------------------------------------------ 424 (517)
Q Consensus 405 ~~~l~~~~~d~~i~~~d~~~------------------------------------------------------------ 424 (517)
.-.+++|.....+++|+...
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 67788888888889987532
Q ss_pred ---------------CCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC-----cEEEEecCCCceeEEecCCCCCe
Q 042434 425 ---------------KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS-----QIYIWNRRNSKPIEILSGHSMTV 484 (517)
Q Consensus 425 ---------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~h~~~v 484 (517)
.+..+.++.|| .+.+.++..+|+|+++|+++... .|++|+..+...+..+.+|+-.|
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGH---GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTV 575 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGH---GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTV 575 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccC---ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEE
Confidence 00111122222 34466677799999999998653 69999999999999999999999
Q ss_pred eEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 485 NCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 485 ~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
+.++|+||+ ++|++.|.|.++.+|....
T Consensus 576 T~l~FSpdg-~~LLsvsRDRt~sl~~~~~ 603 (764)
T KOG1063|consen 576 TRLAFSPDG-RYLLSVSRDRTVSLYEVQE 603 (764)
T ss_pred EEEEECCCC-cEEEEeecCceEEeeeeec
Confidence 999999999 7999999999999998754
No 127
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3e-24 Score=202.62 Aligned_cols=283 Identities=14% Similarity=0.248 Sum_probs=212.7
Q ss_pred CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeee-EEEEeccC---CCCEEEEEECC-CCCeEEEEeCCCeEEEEECC
Q 042434 223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLT-LKHTLRSH---QNPVSFVAWSP-DDTKLLTCGNAEVLKLWDVE 297 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~-~~~~~~~h---~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~ 297 (517)
....+|..+++-..++.++. ..+.||.+....... ....+... .-.+..+.|+. +.++||+++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 34456677788888888776 478888875433211 11111111 12345677874 56899999999999999997
Q ss_pred C---CcEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc-CCCEEEEEe
Q 042434 298 T---GICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP-DGENLISVL 372 (517)
Q Consensus 298 ~---~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~ 372 (517)
. .+.+..|..|...+.++.|++. ..+|++|+.||. |..||.+.+.-..........|.++.|+| .+..++++.
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~--vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGT--VKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCce--EEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 7 5566688899999999999985 668999999999 77777775444333333556899999999 467899999
Q ss_pred CCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434 373 SDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL 449 (517)
Q Consensus 373 ~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 449 (517)
..|.+.+||++... .....|.+++.++.|+|++.+|++|+.|+.|++||+.+...... ..- .....+..+.|.|
T Consensus 197 dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~-~tI--nTiapv~rVkWRP 273 (839)
T KOG0269|consen 197 DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK-HTI--NTIAPVGRVKWRP 273 (839)
T ss_pred CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce-eEE--eecceeeeeeecc
Confidence 99999999999877 66778999999999999999999999999999999975422221 111 2234466777788
Q ss_pred CCcE-EEEec--CCCcEEEEecCCC-ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 450 DGTF-IASGS--ENSQIYIWNRRNS-KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 450 ~~~~-l~~~~--~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
+..+ |++++ .|-.|+|||++.. -+..++..|...++.++|....+..+.+++.||+|..-.+
T Consensus 274 ~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 274 ARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred CccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 7654 55544 3678999998765 4778888999999999998755578999999998765443
No 128
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=9e-25 Score=206.10 Aligned_cols=244 Identities=15% Similarity=0.186 Sum_probs=196.3
Q ss_pred EEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCCCcEE
Q 042434 225 VWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGICK 302 (517)
Q Consensus 225 v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~ 302 (517)
+..+.|+. +.++|||++..|.|.+||+......+....+..|...++++.|++. ..+|++||.||+|++||++..+..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 44567765 6789999999999999999753334555678899999999999985 478899999999999999999988
Q ss_pred EEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 042434 303 HTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRIL 380 (517)
Q Consensus 303 ~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 380 (517)
.++.+....|..+.|+| .+..|+++...|. +..||++... .......|.++|.++.|+|++.+|++|+.|+.|+||
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~--lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGY--LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCce--EEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 88989999999999999 4778888888898 8888887422 222334455799999999999999999999999999
Q ss_pred ECCCce---EEeeccCCCeeEEEEcCCCCEE-EEEe--CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE
Q 042434 381 NLGTYA---ERVISEEHPITSLSVSVDCKNF-IVNL--NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI 454 (517)
Q Consensus 381 d~~~~~---~~~~~~~~~i~~~~~s~~~~~l-~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 454 (517)
|..+.. ...+....++.++.|-|...+. ++++ .|..|++||++....+...+..|......+.+- +.|...+
T Consensus 248 d~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~--~~d~~~l 325 (839)
T KOG0269|consen 248 DMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD--SGDRINL 325 (839)
T ss_pred eccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc--CCCceee
Confidence 998655 5666778899999999987664 4443 377899999998877888888888764444332 3466788
Q ss_pred EEecCCCcEEEEecCCCc
Q 042434 455 ASGSENSQIYIWNRRNSK 472 (517)
Q Consensus 455 ~~~~~dg~i~iwd~~~~~ 472 (517)
.+++.||+|..-..+++.
T Consensus 326 ~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 326 WSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred EeecCccHHHHhhhhccc
Confidence 999999988766655543
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=4.9e-22 Score=185.73 Aligned_cols=271 Identities=16% Similarity=0.119 Sum_probs=193.4
Q ss_pred cccCCCcccEEEeccccCcEEEEEECCCCCEE-EEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEE
Q 042434 206 GRDQIPTETVQILTEHKNEVWFVQFSNNGEYL-ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLT 284 (517)
Q Consensus 206 ~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 284 (517)
.++....+.+..+.+|.. +.+++|+|+|+.+ ++++.++.|++||..++. ....+..+.. +..++|+|+++.+++
T Consensus 15 ~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~-~~~~~~~~~g~~l~~ 89 (300)
T TIGR03866 15 VIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGE---VIGTLPSGPD-PELFALHPNGKILYI 89 (300)
T ss_pred EEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCc---EEEeccCCCC-ccEEEECCCCCEEEE
Confidence 344445567777776544 6789999999876 566788999999997653 3344444433 567899999987765
Q ss_pred E-eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe-eeCcCCCceEEEEEc
Q 042434 285 C-GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA-WRGTRIPKVLDLAVT 362 (517)
Q Consensus 285 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~~~i~~~~~~ 362 (517)
+ +.++.+++||+.+++.+..+.. ...+.+++|+|++..+++++.++.. ++.|+..+..... .... ..+..++|+
T Consensus 90 ~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~-~~~~d~~~~~~~~~~~~~--~~~~~~~~s 165 (300)
T TIGR03866 90 ANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNM-AHFIDTKTYEIVDNVLVD--QRPRFAEFT 165 (300)
T ss_pred EcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCe-EEEEeCCCCeEEEEEEcC--CCccEEEEC
Confidence 5 5689999999999888777743 3446889999999999998887542 5557876544332 2222 245778999
Q ss_pred cCCCEEEEE-eCCCcEEEEECCCceE-Eeec-c-------CCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceE
Q 042434 363 PDGENLISV-LSDKDIRILNLGTYAE-RVIS-E-------EHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFK 431 (517)
Q Consensus 363 ~~~~~l~~~-~~dg~i~i~d~~~~~~-~~~~-~-------~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~ 431 (517)
|+++.++++ ..++.|++||+.+.+. .... . ......++|+|+++.++++ ..++.+.+||+.+. .....
T Consensus 166 ~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-~~~~~ 244 (300)
T TIGR03866 166 ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-EVLDY 244 (300)
T ss_pred CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 999988655 4689999999988762 2111 1 1123568899999986554 45678999999765 33332
Q ss_pred EeCcccCceEEEeecCCCCCcEEEEe-cCCCcEEEEecCCCceeEEecCCCCCeeEEEecC
Q 042434 432 YTGHSQNKYVIRSCFGGLDGTFIASG-SENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 491 (517)
Q Consensus 432 ~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~ 491 (517)
.. +... +..+.++|+|++|+++ +.+|.|++||+.+++++..+... ...++++++|
T Consensus 245 ~~-~~~~---~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 245 LL-VGQR---VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EE-eCCC---cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 22 1122 4455679999999886 46899999999999999999754 5568888875
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=187.16 Aligned_cols=265 Identities=16% Similarity=0.217 Sum_probs=200.9
Q ss_pred EeeCC-CcEEEEEecCCCeeeEEEEeccC-CCCEEEEEECCCCCeEEEEeC-CCeEEEEECCCCcEEEEeCCCCCceEEE
Q 042434 239 SSSSD-CSAIIWKVLEDSKLTLKHTLRSH-QNPVSFVAWSPDDTKLLTCGN-AEVLKLWDVETGICKHTFGDHGFIVSSC 315 (517)
Q Consensus 239 t~~~d-g~i~iw~~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i 315 (517)
+++.| .++.+||+.++... .++++. ...-.++..- .+.+++++.. ...+.+|.+...........-.++|.++
T Consensus 12 ssS~d~~~~~~~dl~TGt~~---~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al 87 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSL---LQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL 87 (476)
T ss_pred ccCCCCcceeEEecCCCcee---EEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeee
Confidence 33444 45999999887433 344433 1111111111 2356766654 3489999987655544333557889999
Q ss_pred EEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---------
Q 042434 316 AWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--------- 386 (517)
Q Consensus 316 ~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------- 386 (517)
+-+|+|.+++.|+..|. +|.|.+.+..+......|...|+++.|+.||.++++|+.||.|.+|++....
T Consensus 88 ~s~n~G~~l~ag~i~g~--lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~ 165 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGN--LYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVK 165 (476)
T ss_pred ecCCCceEEEeecccCc--EEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence 99999999999989998 9999998766655557777899999999999999999999999999874321
Q ss_pred --EEeeccCCCeeEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCc
Q 042434 387 --ERVISEEHPITSLSVSVD--CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ 462 (517)
Q Consensus 387 --~~~~~~~~~i~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 462 (517)
.....|.-+|+.+.+.+. ..++++++.|.++++||+..+ .....+.... .+.++..+|.++.+++|+++|.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~fp~----si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTITFPS----SIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEecCC----cceeEEEcccccEEEecCCcce
Confidence 344567778999888775 467999999999999999887 4444443222 3667777999999999999999
Q ss_pred EEEEecCCC----------------ceeEEecCCCC--CeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 463 IYIWNRRNS----------------KPIEILSGHSM--TVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 463 i~iwd~~~~----------------~~~~~~~~h~~--~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
|.+.++... ..+..+.||.+ .|+|++.+-|| .+|++|+.||.|+|||+.+.+
T Consensus 241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHH
Confidence 999886532 34566778988 99999999999 799999999999999997654
No 131
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7.8e-24 Score=173.29 Aligned_cols=246 Identities=19% Similarity=0.282 Sum_probs=193.4
Q ss_pred eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC---cEEEEeCCCCCceEEEEEeC--CCCeEEEeeCCCceeEEE
Q 042434 263 LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG---ICKHTFGDHGFIVSSCAWFP--DSKRLVCGSSDTEKGIFM 337 (517)
Q Consensus 263 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~d~~v~i~~ 337 (517)
-..|.+.|..+...--|+.||+|+.|++|+|+.++++ +.+.++.+|.++|+.++|.. -|.+|++++.||. |.+
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk--VIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK--VII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce--EEE
Confidence 3568888988888888999999999999999999765 46778899999999999976 6999999999999 777
Q ss_pred EeCCCCeeEe--eeCcCCCceEEEEEccC--CCEEEEEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEcCC---C
Q 042434 338 CDCDGNEIKA--WRGTRIPKVLDLAVTPD--GENLISVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVSVD---C 405 (517)
Q Consensus 338 ~~~~~~~~~~--~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~---~ 405 (517)
|...+..-.. ....|...|++++|.|. |-.|++++.||.|.|.+.++.. .....|.-.+++++|.|. |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 7776543221 12334568999999986 4588999999999999987652 455567888999999995 4
Q ss_pred -----------CEEEEEeCCCeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCC----CcEEEEecCCCcEEEEecC
Q 042434 406 -----------KNFIVNLNSQEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLD----GTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 406 -----------~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~dg~i~iwd~~ 469 (517)
+.|++|+.|+.|++|+.... +.....+.+|..- ++-++|.|. -.+|++++.||++.||-..
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw---VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW---VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchh---hhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 56999999999999999663 3444557778765 444444554 3589999999999999765
Q ss_pred CC--c-eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 470 NS--K-PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 470 ~~--~-~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
.. . ....+......+..+.|++.| ++|+.++.|+.|.+|.-+..
T Consensus 242 ~e~e~wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 242 EEYEPWKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred CccCcccccccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEeCCC
Confidence 21 1 122233346789999999999 79999999999999987643
No 132
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=4e-23 Score=193.20 Aligned_cols=288 Identities=17% Similarity=0.208 Sum_probs=227.3
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC-----------CCeEEEEeCCCeEEEE
Q 042434 226 WFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD-----------DTKLLTCGNAEVLKLW 294 (517)
Q Consensus 226 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-----------~~~l~s~~~dg~i~iw 294 (517)
-++.|++....|...-.|..++|||+.+-++......+..|...|+.+.--|- ..-+++|+.|++|++|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 46789999899999999999999999887777777777889998988876551 2358899999999999
Q ss_pred ECCCCc---EEEE----------------------------------eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE
Q 042434 295 DVETGI---CKHT----------------------------------FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337 (517)
Q Consensus 295 d~~~~~---~~~~----------------------------------~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~ 337 (517)
|++.+. ..+. .-.....+.+++.+|+|++|++|...|+ +.+
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn--lrV 485 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN--LRV 485 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc--eEE
Confidence 987521 1100 0013457999999999999999999999 777
Q ss_pred EeCCCCeeEeeeCcCCCceEEEEEccC---CCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCC--CEEE
Q 042434 338 CDCDGNEIKAWRGTRIPKVLDLAVTPD---GENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDC--KNFI 409 (517)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~--~~l~ 409 (517)
+++..-....+...|...|.|+.++.. .++|++++.|..|+|||....- ...-.|...|+++.|.-+| ..++
T Consensus 486 y~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 486 YDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred EEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence 787766666666677789999999863 4689999999999999997654 5566788899999999887 7789
Q ss_pred EEeCCCeEEEEEcCCCCccceEEeCc--ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC---CCCCe
Q 042434 410 VNLNSQEIHMWDVAGKWEKPFKYTGH--SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG---HSMTV 484 (517)
Q Consensus 410 ~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~v 484 (517)
+++.|..|.+--.+.. .....+..+ ......+--+...|..+++++++.|..|+|||+.+|+..+.|++ |.+..
T Consensus 566 scGADksimFr~~qk~-~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l 644 (1080)
T KOG1408|consen 566 SCGADKSIMFRVNQKA-SSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL 644 (1080)
T ss_pred eccCchhhheehhccc-cCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCce
Confidence 9999987755433321 222222222 22333444555689999999999999999999999999999985 67888
Q ss_pred eEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434 485 NCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV 517 (517)
Q Consensus 485 ~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v 517 (517)
..+...|.| .++|+...|.++.++|+.+++.|
T Consensus 645 IKv~lDPSg-iY~atScsdktl~~~Df~sgEcv 676 (1080)
T KOG1408|consen 645 IKVILDPSG-IYLATSCSDKTLCFVDFVSGECV 676 (1080)
T ss_pred EEEEECCCc-cEEEEeecCCceEEEEeccchhh
Confidence 899999999 79999999999999999998764
No 133
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=8.8e-23 Score=190.45 Aligned_cols=335 Identities=16% Similarity=0.241 Sum_probs=251.7
Q ss_pred HHHHHhccccccCCCCCc-cccccCCCcccccCCCcc--------cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEE
Q 042434 178 ETAVTSQIDSCQYHNSSV-AISLYEDHCCGRDQIPTE--------TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAII 248 (517)
Q Consensus 178 ~~~~~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~i 248 (517)
.+.++.-+.....++... .++.+.|..+..+..... .+....|..+.-+.+-|+|+++.+++-+..|-.++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 344555566667777764 777788887776665443 23334456677999999999999999999999999
Q ss_pred EEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC----cEEEEeCCCCCceEEEEEeCCCCeE
Q 042434 249 WKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG----ICKHTFGDHGFIVSSCAWFPDSKRL 324 (517)
Q Consensus 249 w~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l 324 (517)
|...............||.+.|++++|+|.|.+|++.|.|.+-+++-.-.. ..+.+-+-|+..++|++|-+....|
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F 422 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF 422 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence 995555556666778999999999999999999999999999999864311 1233345688899999999866677
Q ss_pred EEeeCCCceeEEEEeC-------------------------------CCCeeEe------------ee------------
Q 042434 325 VCGSSDTEKGIFMCDC-------------------------------DGNEIKA------------WR------------ 349 (517)
Q Consensus 325 ~~~~~d~~v~i~~~~~-------------------------------~~~~~~~------------~~------------ 349 (517)
++|......+++.... ..+.... ..
T Consensus 423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e 502 (764)
T KOG1063|consen 423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE 502 (764)
T ss_pred eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence 7777776644442100 0000000 00
Q ss_pred -------------------CcCCCceEEEEEccCCCEEEEEeCCC-----cEEEEECCCce--EEeeccCCCeeEEEEcC
Q 042434 350 -------------------GTRIPKVLDLAVTPDGENLISVLSDK-----DIRILNLGTYA--ERVISEEHPITSLSVSV 403 (517)
Q Consensus 350 -------------------~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~--~~~~~~~~~i~~~~~s~ 403 (517)
.+|.-.|.+++.+|+++.+++++... .|++|+..+.. .....|.-.|+.++|||
T Consensus 503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP 582 (764)
T ss_pred CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence 03344789999999999999988654 69999998876 55678888999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC--ceeEE--ecC
Q 042434 404 DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS--KPIEI--LSG 479 (517)
Q Consensus 404 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~--~~~ 479 (517)
||++|++.+.|.++.+|...........+........+|..|.|+|++.+++|+|.|.+|++|..... +.+.. ...
T Consensus 583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~ 662 (764)
T KOG1063|consen 583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLK 662 (764)
T ss_pred CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhc
Confidence 99999999999999999986554444444444455567888999999999999999999999998877 43333 234
Q ss_pred CCCCeeEEEecCCC----CcEEEEeeCCCcEEEeCCC
Q 042434 480 HSMTVNCVSWNPKR----PKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 480 h~~~v~~v~~~~~~----~~~l~s~~~dg~v~iw~~~ 512 (517)
+..+|+.++|.|-. ..+++.|-..|.|.+|...
T Consensus 663 ~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 663 FSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred cCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 78999999998742 1377888899999999965
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.5e-23 Score=196.58 Aligned_cols=244 Identities=18% Similarity=0.298 Sum_probs=196.4
Q ss_pred ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC-cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC
Q 042434 264 RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG 342 (517)
Q Consensus 264 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~ 342 (517)
..|...-+.++|.|+|++|++++.||.|++|+.... +...++..+...|.+++.. +.+|++|+.+++|.+|.++...
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 468889999999999999999999999999987665 3344443477778877764 5599999999996555555432
Q ss_pred CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 042434 343 NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMW 420 (517)
Q Consensus 343 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~ 420 (517)
...+...-.-++.+++++.+|++++.|+.|-.|++.+..+.. ....+|..+|.++.++|++.++++.+.||.|++|
T Consensus 88 --~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 --EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred --ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 221111122378999999999999999999999999998766 7788899999999999999999999999999999
Q ss_pred EcCCCCccceEEeCcccC-----ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC--CCCCeeEEEecCCC
Q 042434 421 DVAGKWEKPFKYTGHSQN-----KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG--HSMTVNCVSWNPKR 493 (517)
Q Consensus 421 d~~~~~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~~ 493 (517)
|+.++ .....+.+.... ...+.-..|+|+|..++..+.|+.|++|+..++.....+.. +...+..+.|+|.|
T Consensus 166 ~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred Ecccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 99876 444433332211 23345567799988888889999999999999998888864 44559999999999
Q ss_pred CcEEEEeeCCCcEEEeCCCC
Q 042434 494 PKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 494 ~~~l~s~~~dg~v~iw~~~~ 513 (517)
.+||+++.||.|.|||+++
T Consensus 245 -~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 245 -KYIAASTLDGQILVWNVDT 263 (933)
T ss_pred -cEEeeeccCCcEEEEeccc
Confidence 8999999999999999984
No 135
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.92 E-value=1.8e-23 Score=192.98 Aligned_cols=138 Identities=20% Similarity=0.293 Sum_probs=110.5
Q ss_pred CCcEEEEECCCce------EEeeccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCC------CccceEEeCcccCce
Q 042434 374 DKDIRILNLGTYA------ERVISEEHPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGK------WEKPFKYTGHSQNKY 440 (517)
Q Consensus 374 dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~------~~~~~~~~~~~~~~~ 440 (517)
.|.|.||+++..- ......+..|+.+.|.| |...+++++.||.|++|.+..+ ......+.+|...++
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~ 681 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT 681 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence 4667777765432 22334556789999999 7788999999999999998543 123345667766644
Q ss_pred EEEeecCCC-CCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 441 VIRSCFGGL-DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 441 ~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
. +.|+| -...|++++.|-+|++||+.+++....+.+|.+.|.+++|+|+| ..+||.+.||+|++|+..+++
T Consensus 682 s---lRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 682 S---LRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred E---EEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCC-cceeeeecCceEEEeCCCCCC
Confidence 4 44455 35689999999999999999999999999999999999999999 799999999999999998765
No 136
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=1.1e-22 Score=173.12 Aligned_cols=274 Identities=19% Similarity=0.275 Sum_probs=209.6
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEEecCCC-------e--eeEEEEec-cCCCCEEEEEEC-------CCCCeEEEEeCC
Q 042434 226 WFVQFSNNGEYLASSSSDCSAIIWKVLEDS-------K--LTLKHTLR-SHQNPVSFVAWS-------PDDTKLLTCGNA 288 (517)
Q Consensus 226 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-------~--~~~~~~~~-~h~~~v~~l~~s-------~~~~~l~s~~~d 288 (517)
..+.|||||..|++-+.|..+.+|++.... . .....++. .....|...+|- |+..++++.+.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 367899999999999999999999984211 0 01111111 124567778885 677899999999
Q ss_pred CeEEEEECCCCcEEEEeCC--CC---CceEEEEEeCCCCeEEEeeCCCceeEEEEeCC--CCeeEee------eCcCCCc
Q 042434 289 EVLKLWDVETGICKHTFGD--HG---FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD--GNEIKAW------RGTRIPK 355 (517)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~--~~---~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~------~~~~~~~ 355 (517)
.-|++||.-+|+....+.. |. ....+++|+|||.+|++|.... |.++|+. +...... .....+.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrc---irvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRC---IRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccce---EEEeeccCCCCCCcchhhhhcccccccce
Confidence 9999999999998877753 32 3456899999999999886654 6677763 3222111 1223457
Q ss_pred eEEEEEccCCC-EEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCccceE
Q 042434 356 VLDLAVTPDGE-NLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGKWEKPFK 431 (517)
Q Consensus 356 i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~ 431 (517)
+.+++|+|-.. .+++++....+-||.-.... .....+.+.|+.+.|.++|+.+.+|.. +..|..||++....++..
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 88999999655 88899988888887766555 556688899999999999999999987 779999999987778888
Q ss_pred EeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC-CceeEEecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN-SKPIEILSGHSMTVNCVSWNPKRPKMLASASDD 503 (517)
Q Consensus 432 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d 503 (517)
+..|......-...-..|++++|++|+.||.|++||+++ |..+..+..|+..|+.++++|-- .++++++..
T Consensus 290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m-pilatssGq 361 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM-PILATSSGQ 361 (406)
T ss_pred hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc-ceeeeccCc
Confidence 887776322222223378999999999999999999998 78888888999999999999997 478887754
No 137
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=7.4e-23 Score=181.50 Aligned_cols=238 Identities=19% Similarity=0.351 Sum_probs=176.1
Q ss_pred CCCEEEEeeCCCcEEEEEecCCCeeeEEEE------------------eccCCCCEEEEEECCC-CCeEEEEeCCCeEEE
Q 042434 233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHT------------------LRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKL 293 (517)
Q Consensus 233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~------------------~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~i 293 (517)
.|+|+|.|+.|..|.|||+.--....+..+ -.+|+..|.+++|+.. .+.|||||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 368999999999999999853222222222 2369999999999875 468899999999999
Q ss_pred EECCCCcEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCCCEEEE
Q 042434 294 WDVETGICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDGENLIS 370 (517)
Q Consensus 294 wd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 370 (517)
||+.+|++..++..|+..|.++.|+|. ...|++|+.|++ +.+.|.+. ..
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~--V~l~D~R~~~~s-------------------------- 322 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGT--VALKDCRDPSNS-------------------------- 322 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccce--EEeeeccCcccc--------------------------
Confidence 999999999999989999999999985 567777888887 44444331 11
Q ss_pred EeCCCcEEEEECCCceEEeeccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434 371 VLSDKDIRILNLGTYAERVISEEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL 449 (517)
Q Consensus 371 ~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 449 (517)
.......+.|..++|.|. ...+++++.||+++-+|++....++.....|...+..+.... .
T Consensus 323 ----------------~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~--~ 384 (463)
T KOG0270|consen 323 ----------------GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNI--Q 384 (463)
T ss_pred ----------------CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecC--C
Confidence 111122334666667664 345777788899999999888788999999998866655433 3
Q ss_pred CCcEEEEecCCCcEEEEecCCCceeEEe--cCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 450 DGTFIASGSENSQIYIWNRRNSKPIEIL--SGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
...++++++.|+.|++|++..-.+..+. .-.-+...|.++.|+-+..++.||..+.++|||+.+...
T Consensus 385 ~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 385 TPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred CCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 3458999999999999998654432221 111244678888998888999999999999999987654
No 138
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2e-22 Score=175.92 Aligned_cols=295 Identities=17% Similarity=0.187 Sum_probs=223.4
Q ss_pred cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC---CeeeEEEEe-ccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434 214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED---SKLTLKHTL-RSHQNPVSFVAWSPDDTKLLTCGNAE 289 (517)
Q Consensus 214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~---~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg 289 (517)
+.+-+.+|.+.|+++.||.++++||+|+.|..+++|+++.. ...+++... ..|...|.|++|...++++++|+.++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 44567799999999999999999999999999999998521 111222222 34568999999999999999999999
Q ss_pred eEEEEECCCCcEEEEeCC--CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe--eEee-eCcCCCceEEEEEccC
Q 042434 290 VLKLWDVETGICKHTFGD--HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE--IKAW-RGTRIPKVLDLAVTPD 364 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~-~~~~~~~i~~~~~~~~ 364 (517)
+|...|+++.+.+..+.. ..+.|..+..+|..+.|++.+.++. |.+||.+..+ ...+ ..........+.|+|.
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~--V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKL--VSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCce--EEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 999999999998887742 2458999999999999999999999 7778876433 2222 2222236788899997
Q ss_pred CC-EEEEEeCCCcEEEEECCCceEEee---------ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeC
Q 042434 365 GE-NLISVLSDKDIRILNLGTYAERVI---------SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG 434 (517)
Q Consensus 365 ~~-~l~~~~~dg~i~i~d~~~~~~~~~---------~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 434 (517)
.. ++++.+..+-+.+||.+....... .......+..|+|+|..+++--....-.+||+-.....+.++..
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence 65 677888889999999987652111 11233467899999999998888888889998775344444442
Q ss_pred ccc---CceEEEeecCCCCCcEEEEecCCCcEEEEecCC----------C-------------ceeEEecCCCCCeeEEE
Q 042434 435 HSQ---NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN----------S-------------KPIEILSGHSMTVNCVS 488 (517)
Q Consensus 435 ~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~----------~-------------~~~~~~~~h~~~v~~v~ 488 (517)
... ....+.+++|- +...+++|+.+-.|++|.+.. | +.+..++||...++.|.
T Consensus 286 N~~GY~N~~T~KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred CCCcceeeeeeeeeeee-cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 221 22345555544 445599999999999998642 1 13456789999999999
Q ss_pred ecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 489 WNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 489 ~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
|+|.. ++|++.|-.+.++||..-
T Consensus 365 F~~H~-~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 365 FSQHN-NLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ecCCc-ceEeccchhhheeccccc
Confidence 99998 899999999999999753
No 139
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=1.4e-22 Score=188.17 Aligned_cols=272 Identities=15% Similarity=0.206 Sum_probs=214.4
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEE
Q 042434 224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH 303 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 303 (517)
.|+.++|-|||..|+.+.. ..+.+||...+ ....++++|.+.|.|++|+.||+.+|+|+.|..|.+|+..-.- +-
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG---~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDG---TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-IL 88 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCc---ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-ee
Confidence 8999999999998887754 47999999877 4558899999999999999999999999999999999864322 22
Q ss_pred EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECC
Q 042434 304 TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLG 383 (517)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 383 (517)
.+ .|+..|.|+.|+|-...+++++-.. .-.|....+.+...... ..+.+++|..||.+++.|-.+|+|.+-+-.
T Consensus 89 kY-SH~D~IQCMsFNP~~h~LasCsLsd---FglWS~~qK~V~K~kss--~R~~~CsWtnDGqylalG~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 89 KY-SHNDAIQCMSFNPITHQLASCSLSD---FGLWSPEQKSVSKHKSS--SRIICCSWTNDGQYLALGMFNGTISIRNKN 162 (1081)
T ss_pred ee-ccCCeeeEeecCchHHHhhhcchhh---ccccChhhhhHHhhhhh--eeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence 33 7899999999999999999998765 56677765554443332 378999999999999999999999998754
Q ss_pred CceEEe----eccCCCeeEEEEcCCC-----CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE
Q 042434 384 TYAERV----ISEEHPITSLSVSVDC-----KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI 454 (517)
Q Consensus 384 ~~~~~~----~~~~~~i~~~~~s~~~-----~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 454 (517)
...... -+...+|.+++|+|.. ..+++.....++.+|.+.+......+-- .+...|+.+-++|.|+
T Consensus 163 gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L-----~FdP~CisYf~NGEy~ 237 (1081)
T KOG1538|consen 163 GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRAL-----NFDPCCISYFTNGEYI 237 (1081)
T ss_pred CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccC-----CCCchhheeccCCcEE
Confidence 443222 2356789999999963 4577778888888888866411111111 1112344446899999
Q ss_pred EEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 455 ASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 455 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
..|+.|+.+.+|- +.|-.+.++......|+.++..|++ ..++.|..||+|..|++..
T Consensus 238 LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNs-Q~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNS-QYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCC-ceEEEEEccCeeehhhhHH
Confidence 9999999999997 5588888887788999999999999 7999999999999988743
No 140
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.3e-22 Score=189.36 Aligned_cols=261 Identities=19% Similarity=0.256 Sum_probs=202.6
Q ss_pred CCCCCccccccCCCcccccCC-Ccc--cEEEeccccCcEEE-EEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEec
Q 042434 190 YHNSSVAISLYEDHCCGRDQI-PTE--TVQILTEHKNEVWF-VQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR 264 (517)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~l~~h~~~v~~-~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~ 264 (517)
.......++.+.|.....|.. ..+ ....+.+|.+-|.+ +++-+ ++-.+++|+.|++|.+|..... .+..++.
T Consensus 22 ~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~---~P~~~Lk 98 (745)
T KOG0301|consen 22 VTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA---EPLYTLK 98 (745)
T ss_pred ecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC---Cchhhhh
Confidence 333334556665555443333 222 23457789998888 88876 5556999999999999998544 6678999
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe
Q 042434 265 SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE 344 (517)
Q Consensus 265 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~ 344 (517)
+|...|.|++...++. +++||.|.++++|.. +++...+.+|...|++++..|++ .+++|+.|.+ |++|.- +..
T Consensus 99 gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKt--IklWk~-~~~ 171 (745)
T KOG0301|consen 99 GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKT--IKLWKG-GTL 171 (745)
T ss_pred ccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcce--eeeccC-Cch
Confidence 9999999999888877 999999999999985 56777799999999999999988 8999999999 666665 566
Q ss_pred eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 042434 345 IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVA 423 (517)
Q Consensus 345 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~ 423 (517)
++.+.+ |.+.|+.+++-+++ .+++++.||.|+.|++.... ....+|..-+.+++..+++..+++++.|+++++|+..
T Consensus 172 l~tf~g-HtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 172 LKTFSG-HTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred hhhhcc-chhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 677776 55699999999775 57899999999999995555 6777888899999989999999999999999999976
Q ss_pred CCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 424 GKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
...+.+.-.....+...++ ++|. |++|+.||.||||...
T Consensus 250 ---e~~q~I~lPttsiWsa~~L---~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 250 ---ECVQVITLPTTSIWSAKVL---LNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred ---ceEEEEecCccceEEEEEe---eCCC-EEEeccCceEEEEEec
Confidence 3333333333333333332 3443 7788899999999765
No 141
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=181.18 Aligned_cols=314 Identities=14% Similarity=0.142 Sum_probs=234.6
Q ss_pred HHHHHHHHHHhCC-CCCCCCcchHHHHHH------HHHHhccccccCCCCCc--cccccCCCc--ccccCCCcccEEEec
Q 042434 151 RKRLLVELERLLP-PPEVVPERRLEHLVE------TAVTSQIDSCQYHNSSV--AISLYEDHC--CGRDQIPTETVQILT 219 (517)
Q Consensus 151 r~~l~~~~~~~~~-~~~~~~~~rl~~l~~------~~~~~q~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~l~ 219 (517)
-+.++..-..++. ....+|+.+|.-..- ..-...|.+..||+... .++.++... ...+.-....++.+.
T Consensus 175 ~d~lL~tt~~yi~s~s~~Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~ 254 (514)
T KOG2055|consen 175 LDDLLKTTVGYIDSRSKLLPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH 254 (514)
T ss_pred HHHHHHhhhcccccccccCCCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee
Confidence 3556665555565 455667766543111 11123455666777655 233333322 223444455677777
Q ss_pred cccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCC-CCEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 042434 220 EHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFVAWSPDDTKLLTCGNAEVLKLWDVE 297 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 297 (517)
--..+|.+++|.|+|. .+++++.....+.||+.+.+- ..+....++. ..+.....+|++++|+..|..|.|.+....
T Consensus 255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~-~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak 333 (514)
T KOG2055|consen 255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV-TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK 333 (514)
T ss_pred eccCccceeeecCCCceEEEecccceEEEEeecccccc-ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhh
Confidence 7889999999999999 889999999999999976533 3344444444 457788899999999999999999999999
Q ss_pred CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434 298 TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKD 376 (517)
Q Consensus 298 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 376 (517)
+++.+.++ ...+.|..+.|+.+++.|++++.+|. ||+||++.. .+..+.....-.-++++.++++.++++|+..|.
T Consensus 334 T~eli~s~-KieG~v~~~~fsSdsk~l~~~~~~Ge--V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi 410 (514)
T KOG2055|consen 334 TKELITSF-KIEGVVSDFTFSSDSKELLASGGTGE--VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI 410 (514)
T ss_pred hhhhhhee-eeccEEeeEEEecCCcEEEEEcCCce--EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce
Confidence 99998888 55678999999999999999999998 999999864 455665554445678899999999999999999
Q ss_pred EEEEECCCce--------EEeeccCCCeeEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCccceEEeCcccCceEEEeec
Q 042434 377 IRILNLGTYA--------ERVISEEHPITSLSVSVDCKNFIVNLN--SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCF 446 (517)
Q Consensus 377 i~i~d~~~~~--------~~~~~~~~~i~~~~~s~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 446 (517)
|.|||..+.. .........|+++.|++++..|+.++. ...+++..+.+. .....++........++|+.
T Consensus 411 VNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~-TVFsNfP~~n~~vg~vtc~a 489 (514)
T KOG2055|consen 411 VNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC-TVFSNFPTSNTKVGHVTCMA 489 (514)
T ss_pred EEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce-eeeccCCCCCCcccceEEEE
Confidence 9999976532 222334557999999999999988876 567888888664 33344445555666789999
Q ss_pred CCCCCcEEEEecCCCcEEEEecC
Q 042434 447 GGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 447 ~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
|||.|.++|.|.++|.+.+|.+.
T Consensus 490 FSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 490 FSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ecCCCceEEeecCCCceeeEeec
Confidence 99999999999999999999864
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.4e-22 Score=181.86 Aligned_cols=261 Identities=13% Similarity=0.200 Sum_probs=197.7
Q ss_pred cEEEEEECCCCCE-EEEeeCCCcEEEEEecCCC-eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434 224 EVWFVQFSNNGEY-LASSSSDCSAIIWKVLEDS-KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC 301 (517)
Q Consensus 224 ~v~~~~~s~~~~~-l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 301 (517)
.+.++.|+....+ +++.+.|..+++|.-.... .........+ ..-.|++......++++|+..+.|+|||++...+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 3888999886642 2344568889999764221 1222222222 2344555555568999999999999999998888
Q ss_pred EEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccCCC-EEEEEeCCCcEEE
Q 042434 302 KHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPDGE-NLISVLSDKDIRI 379 (517)
Q Consensus 302 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i 379 (517)
.+.+++|...|+++.++-...+|++++..|. |.+....++.-. .+.......|.-+.|+|..+ +|.+++.+|.|.+
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGd--iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtl 191 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGD--IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTL 191 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCc--EEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEE
Confidence 8889999999999999999999999999999 666666654433 33333344567899999877 5567889999999
Q ss_pred EECCCce---EEeeccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEE
Q 042434 380 LNLGTYA---ERVISEEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA 455 (517)
Q Consensus 380 ~d~~~~~---~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 455 (517)
||+.... .....|..+...++|+|. ...+++.+.|..|.+||.+...........|+ +..+.|+++|.+|+
T Consensus 192 wDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P-----lstvaf~~~G~~L~ 266 (673)
T KOG4378|consen 192 WDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP-----LSTVAFSECGTYLC 266 (673)
T ss_pred EeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC-----cceeeecCCceEEE
Confidence 9998776 344568889999999995 45677788899999999986522222222222 56777899999999
Q ss_pred EecCCCcEEEEecCCC-ceeEEecCCCCCeeEEEecCCC
Q 042434 456 SGSENSQIYIWNRRNS-KPIEILSGHSMTVNCVSWNPKR 493 (517)
Q Consensus 456 ~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~ 493 (517)
+|+..|.|+.||++.. .++.++..|...|++++|-|..
T Consensus 267 aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 267 AGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999999864 5899999999999999998763
No 143
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.90 E-value=9.3e-23 Score=168.90 Aligned_cols=289 Identities=20% Similarity=0.279 Sum_probs=201.3
Q ss_pred CCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec-cCCCCEEEEEECCCCCeEEEEeCC
Q 042434 210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR-SHQNPVSFVAWSPDDTKLLTCGNA 288 (517)
Q Consensus 210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~d 288 (517)
.|+.+..++++|.+.|+++.|-.+++ |.+|..-|.|++|++.+... ...+. .|...|+.+.-.|+ ..+.+-+.|
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~---~~~~r~~g~~~it~lq~~p~-d~l~tqgRd 76 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERD---LPLIRLFGRLFITNLQSIPN-DSLDTQGRD 76 (323)
T ss_pred CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCcc---chhhhhhccceeeceeecCC-cchhhcCCC
Confidence 46778889999999999999988876 89999999999999976533 34444 56788999988887 578888999
Q ss_pred CeEEEEECCCCcEEEEeCCCCCceEEEEEeC-----CCC----eEEEeeCCCceeEEEEeCCCCeeEee----eCcCCCc
Q 042434 289 EVLKLWDVETGICKHTFGDHGFIVSSCAWFP-----DSK----RLVCGSSDTEKGIFMCDCDGNEIKAW----RGTRIPK 355 (517)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-----~~~----~l~~~~~d~~v~i~~~~~~~~~~~~~----~~~~~~~ 355 (517)
+.+.+|++.-+..+.. |.-.+.++.|.+ +++ .++.-+.... .+..-|......... .....+.
T Consensus 77 ~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsd-e~h~~D~g~~tqv~i~dd~~~~Klgs 152 (323)
T KOG0322|consen 77 PLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSD-ETHKQDGGDTTQVQIADDSERSKLGS 152 (323)
T ss_pred ceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccc-hhhhhccCccceeEccCchhccccCc
Confidence 9999999977654432 222333333332 111 1222111111 011112111111111 1122345
Q ss_pred eEEEEEcc-CCC--EEEEEeCCCcEEEEECCCce------------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 042434 356 VLDLAVTP-DGE--NLISVLSDKDIRILNLGTYA------------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMW 420 (517)
Q Consensus 356 i~~~~~~~-~~~--~l~~~~~dg~i~i~d~~~~~------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~ 420 (517)
+.+..+.. ++. .+++|..+|.+.+||+.++. .....+..++.++.+.+....=++++.+..+..|
T Consensus 153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMY 232 (323)
T ss_pred eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceee
Confidence 66666433 233 56788899999999998862 2344678899999999877777788888889999
Q ss_pred EcCCC--Cccc-eEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEE
Q 042434 421 DVAGK--WEKP-FKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKML 497 (517)
Q Consensus 421 d~~~~--~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l 497 (517)
++... ...+ ....-...+ +.-+.+.||++.+|+++.|+.|+||+.++..++..++-|++.|++++|+|+. .++
T Consensus 233 Sl~~s~gslq~~~e~~lknpG---v~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~-~lm 308 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEITLKNPG---VSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC-ELM 308 (323)
T ss_pred eeccccCcccccceEEecCCC---ccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC-chh
Confidence 88543 1111 111111222 2233337999999999999999999999999999999999999999999997 699
Q ss_pred EEeeCCCcEEEeCC
Q 042434 498 ASASDDHTIRIWGP 511 (517)
Q Consensus 498 ~s~~~dg~v~iw~~ 511 (517)
|++|.|+.|.+|++
T Consensus 309 AaaskD~rISLWkL 322 (323)
T KOG0322|consen 309 AAASKDARISLWKL 322 (323)
T ss_pred hhccCCceEEeeec
Confidence 99999999999986
No 144
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=1.1e-21 Score=172.26 Aligned_cols=288 Identities=20% Similarity=0.268 Sum_probs=214.0
Q ss_pred ccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCC------CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434 221 HKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLED------SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL 293 (517)
Q Consensus 221 h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~------~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 293 (517)
...+|..+.|.+++. .+|||+.|..|++|.++.+ ........+..|...|+++.|+|+|..||+|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 346899999999766 9999999999999988643 245667788999999999999999999999999999999
Q ss_pred EECC--------C--------CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceE
Q 042434 294 WDVE--------T--------GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVL 357 (517)
Q Consensus 294 wd~~--------~--------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~ 357 (517)
|... + ....+.+.+|...|..++|+|++.++++++.|.. +++||.....+......+...+.
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns--~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNS--VRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccce--EEEEEeccceeEeeccccccccc
Confidence 9765 2 1234456789999999999999999999999999 99999998888888877878999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCceE---------------------EeeccCC----CeeEEEEcCCCCEEEEEe
Q 042434 358 DLAVTPDGENLISVLSDKDIRILNLGTYAE---------------------RVISEEH----PITSLSVSVDCKNFIVNL 412 (517)
Q Consensus 358 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------------~~~~~~~----~i~~~~~s~~~~~l~~~~ 412 (517)
.++|.|-++++++-+.|...+.+++..... ....|.. -...++|+|+|..+++..
T Consensus 170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 999999999999999998777776654320 0011111 235678999999988764
Q ss_pred C----CC-----eEEEEEcCCCCccceEEeCcccCceEEEee---------------cCCCCCcEEEEecCCCcEEEEec
Q 042434 413 N----SQ-----EIHMWDVAGKWEKPFKYTGHSQNKYVIRSC---------------FGGLDGTFIASGSENSQIYIWNR 468 (517)
Q Consensus 413 ~----d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~---------------~~s~~~~~l~~~~~dg~i~iwd~ 468 (517)
. .+ ..++|+-.....+...+.+.......++++ +.-|-+-.++.++. ..|++||.
T Consensus 250 g~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydt 328 (434)
T KOG1009|consen 250 GLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDT 328 (434)
T ss_pred ceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEecc
Confidence 3 22 234555433323333333333322222221 11133344555554 57999999
Q ss_pred CCCceeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 469 RNSKPIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 469 ~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
++..++..... |-..|++++|+++| ..++..|.||...+-.+.
T Consensus 329 q~~~P~~~v~nihy~~iTDiaws~dg-~~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 329 QTLEPLAVVDNIHYSAITDIAWSDDG-SVLLVSSTDGFCSLVTFE 372 (434)
T ss_pred ccccceEEEeeeeeeeecceeecCCC-cEEEEeccCCceEEEEEc
Confidence 99888887764 88999999999999 688899999976654443
No 145
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=6.4e-23 Score=184.38 Aligned_cols=238 Identities=17% Similarity=0.264 Sum_probs=197.9
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 300 (517)
....|.+|..+|||+.|++|+.-.++.|||+.... ......+....-...+++.+||.+..++++.||.|.|||+.+..
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT-prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT-PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCC-cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 35678889999999999999999999999997543 23334455445567889999999999999999999999999999
Q ss_pred EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEE
Q 042434 301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI 379 (517)
Q Consensus 301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 379 (517)
.++.|++|...+.||..++||..|-+|+-|++ +..||.+. .++..... .+.|.++...|.+.++++|-.++.+.+
T Consensus 543 ~VrqfqGhtDGascIdis~dGtklWTGGlDnt--vRcWDlregrqlqqhdF--~SQIfSLg~cP~~dWlavGMens~vev 618 (705)
T KOG0639|consen 543 LVRQFQGHTDGASCIDISKDGTKLWTGGLDNT--VRCWDLREGRQLQQHDF--SSQIFSLGYCPTGDWLAVGMENSNVEV 618 (705)
T ss_pred eeecccCCCCCceeEEecCCCceeecCCCccc--eeehhhhhhhhhhhhhh--hhhheecccCCCccceeeecccCcEEE
Confidence 99999999999999999999999999999999 88888874 33322222 247999999999999999999999999
Q ss_pred EECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec
Q 042434 380 LNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS 458 (517)
Q Consensus 380 ~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 458 (517)
....... ...-.|..-|.++.|.+.|+++++.+.|+-+..|...-+ ..++..... ..+.+|-+|.|.+||++|+
T Consensus 619 lh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG-asiFqskE~----SsVlsCDIS~ddkyIVTGS 693 (705)
T KOG0639|consen 619 LHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG-ASIFQSKES----SSVLSCDISFDDKYIVTGS 693 (705)
T ss_pred EecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccc-cceeecccc----CcceeeeeccCceEEEecC
Confidence 9887766 566678888999999999999999999999999998765 333333222 2366777799999999999
Q ss_pred CCCcEEEEec
Q 042434 459 ENSQIYIWNR 468 (517)
Q Consensus 459 ~dg~i~iwd~ 468 (517)
.|..-.||.+
T Consensus 694 GdkkATVYeV 703 (705)
T KOG0639|consen 694 GDKKATVYEV 703 (705)
T ss_pred CCcceEEEEE
Confidence 9988888864
No 146
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=8e-24 Score=198.24 Aligned_cols=236 Identities=19% Similarity=0.273 Sum_probs=202.5
Q ss_pred EEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434 216 QILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD 295 (517)
Q Consensus 216 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 295 (517)
+.+..|...|.|+..-..++.+++|+.|..+-+|.+.. ...+..+.+|..+|.++.|+++..+|++|+.+|+|++||
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k---p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK---PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccC---CchhheeeccCCcceeeecCcchhhhcccccCCceeeee
Confidence 45667999999999877889999999999999999843 344456899999999999999999999999999999999
Q ss_pred CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC
Q 042434 296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374 (517)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 374 (517)
++.++.++++.+|...+.++.|+|-+.+++.|+.|+. +.+||.+ .++...+.+ +...+..+.|+|+|++++.++.|
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd--~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~Gr~v~~g~ed 175 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTD--LKIWDIRKKGCSHTYKS-HTRVVDVLRLSPDGRWVASGGED 175 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccceEEecccccccc--ceehhhhccCceeeecC-CcceeEEEeecCCCceeeccCCc
Confidence 9999999999999999999999999999999999999 8889988 456666666 66689999999999999999999
Q ss_pred CcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc
Q 042434 375 KDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT 452 (517)
Q Consensus 375 g~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 452 (517)
..+++||...++ ..+..|...+.++.|+|..-.++.|+.|+++++||+++. ..+...... ...+.+..|+|++.
T Consensus 176 ~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~---~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 176 NTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPE---TDGVRSLAFNPDGK 251 (825)
T ss_pred ceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee-EEeeccCCc---cCCceeeeecCCce
Confidence 999999998887 455668899999999999999999999999999999754 222222222 33477788899999
Q ss_pred EEEEecCCC
Q 042434 453 FIASGSENS 461 (517)
Q Consensus 453 ~l~~~~~dg 461 (517)
.+++|....
T Consensus 252 ~~~~G~q~s 260 (825)
T KOG0267|consen 252 IVLSGEQIS 260 (825)
T ss_pred eeecCchhh
Confidence 999887654
No 147
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.4e-23 Score=196.58 Aligned_cols=253 Identities=17% Similarity=0.278 Sum_probs=212.8
Q ss_pred CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceE
Q 042434 234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVS 313 (517)
Q Consensus 234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 313 (517)
+.+++.+..+-.+++|+.. .+..|...|.++..-..++.+++|+.|..+-+|.+....++..+.+|..+|.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~---------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIe 74 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTR---------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIE 74 (825)
T ss_pred ccccceeeeeeccccccch---------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcce
Confidence 3445556666678888862 3456888899998877788999999999999999988888888899999999
Q ss_pred EEEEeCCCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEee
Q 042434 314 SCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVI 390 (517)
Q Consensus 314 ~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~ 390 (517)
++.|+++..+|++|+.+|+ |.+||+.... ++.+.++. ..+.++.|+|-+.+.+.|+.|+.+++||.+... ....
T Consensus 75 Sl~f~~~E~Llaagsasgt--iK~wDleeAk~vrtLtgh~-~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~ 151 (825)
T KOG0267|consen 75 SLTFDTSERLLAAGSASGT--IKVWDLEEAKIVRTLTGHL-LNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK 151 (825)
T ss_pred eeecCcchhhhcccccCCc--eeeeehhhhhhhhhhhccc-cCcceeeeccceEEeccccccccceehhhhccCceeeec
Confidence 9999999999999999999 8888987544 44444444 588999999999999999999999999998544 4445
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC
Q 042434 391 SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN 470 (517)
Q Consensus 391 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 470 (517)
.|...+..+.|+|+|++++.++.|..+++||+..+ .....|..|..... .+-++|..-++++|+.|+++++||+++
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~---sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQ---SLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred CCcceeEEEeecCCCceeeccCCcceeeeeccccc-cccccccccccccc---ccccCchhhhhccCCCCceeeeeccce
Confidence 57778999999999999999999999999999777 77778888877644 444689999999999999999999999
Q ss_pred CceeEEecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434 471 SKPIEILSGHSMTVNCVSWNPKRPKMLASASDD 503 (517)
Q Consensus 471 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d 503 (517)
.+.+.........|.+.+|+|++ ..+.+|..+
T Consensus 228 fe~I~s~~~~~~~v~~~~fn~~~-~~~~~G~q~ 259 (825)
T KOG0267|consen 228 FEVISSGKPETDGVRSLAFNPDG-KIVLSGEQI 259 (825)
T ss_pred eEEeeccCCccCCceeeeecCCc-eeeecCchh
Confidence 99999888888999999999999 566666544
No 148
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.2e-23 Score=202.94 Aligned_cols=284 Identities=19% Similarity=0.217 Sum_probs=216.1
Q ss_pred EEEECCCCC-EEEEe----------eCCCcEEEEEecCCCe---eeEEEEeccCCCCEEEEEECCCCCe----EEEEeCC
Q 042434 227 FVQFSNNGE-YLASS----------SSDCSAIIWKVLEDSK---LTLKHTLRSHQNPVSFVAWSPDDTK----LLTCGNA 288 (517)
Q Consensus 227 ~~~~s~~~~-~l~t~----------~~dg~i~iw~~~~~~~---~~~~~~~~~h~~~v~~l~~s~~~~~----l~s~~~d 288 (517)
.++|||.+. ++|+| +.+.++.||.+..... ++.+..+. -....+.++|.+.+.. ||.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 468999886 66655 3355667776642211 12222222 3466889999987765 8888999
Q ss_pred CeEEEEECCC---C---cEEEEeCCCCCceEEEEEeCCCC-eEEEeeCCCceeEEEEeCCCCeeEee--eCcCCCceEEE
Q 042434 289 EVLKLWDVET---G---ICKHTFGDHGFIVSSCAWFPDSK-RLVCGSSDTEKGIFMCDCDGNEIKAW--RGTRIPKVLDL 359 (517)
Q Consensus 289 g~i~iwd~~~---~---~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~--~~~~~~~i~~~ 359 (517)
|.|.+||... + ..+.+...|.+.|..+.|++... .+++|+.||. |++||+..-..... .....+.|.++
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ge--I~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGE--ILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCc--EEEeccCCcCCCCCCCCCCCcccceEe
Confidence 9999999865 2 24556778999999999999755 9999999999 99999885222111 12234579999
Q ss_pred EEccCC-CEEEEEeCCCcEEEEECCCce--EEee--ccCCCeeEEEEcCCCC-EEEEEeCCC---eEEEEEcCCCCccce
Q 042434 360 AVTPDG-ENLISVLSDKDIRILNLGTYA--ERVI--SEEHPITSLSVSVDCK-NFIVNLNSQ---EIHMWDVAGKWEKPF 430 (517)
Q Consensus 360 ~~~~~~-~~l~~~~~dg~i~i~d~~~~~--~~~~--~~~~~i~~~~~s~~~~-~l~~~~~d~---~i~~~d~~~~~~~~~ 430 (517)
+|+..- ..|++++.+|.+.|||++..+ .... .....+..++|+|+.. .+++++.|. .|.+||++......+
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k 247 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK 247 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh
Confidence 998754 467788899999999999886 2222 2223578999999764 466666654 699999998878888
Q ss_pred EEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 431 KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 431 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
.+.+|..+...+.+| ..|..++++++.|+.|.+|+.++++.+..+....+.+..+.|+|..+.+++.++.||.|.|+.
T Consensus 248 ~~~~H~~GilslsWc--~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWC--PQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred hhcccccceeeeccC--CCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeee
Confidence 888998885554443 345689999999999999999999999999988899999999999988999999999999999
Q ss_pred CCCCC
Q 042434 511 PCQSS 515 (517)
Q Consensus 511 ~~~~~ 515 (517)
+.+..
T Consensus 326 l~~~~ 330 (1049)
T KOG0307|consen 326 LQGTD 330 (1049)
T ss_pred eecCC
Confidence 87643
No 149
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=6e-22 Score=176.50 Aligned_cols=209 Identities=21% Similarity=0.338 Sum_probs=171.0
Q ss_pred ccEEEeccccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCCCe----eeEEEEeccCCCCEEEEEECCC-CCeEEEEe
Q 042434 213 ETVQILTEHKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDSK----LTLKHTLRSHQNPVSFVAWSPD-DTKLLTCG 286 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~----~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~ 286 (517)
.+-.+|.||.+.=+.++|++. .-.|++|+.|+.|.+||+..... ..+...+.+|...|..++|++- ...+++++
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence 455589999999999999994 45899999999999999975443 5567788999999999999995 46788999
Q ss_pred CCCeEEEEECC--CCcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEE
Q 042434 287 NAEVLKLWDVE--TGICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAV 361 (517)
Q Consensus 287 ~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~ 361 (517)
.|+.+.|||++ +.++.+...+|.+.|.|++|+| ++..||+|+.|++ |.+||++. .++..+.++. ..|..+.|
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t--V~LwDlRnL~~~lh~~e~H~-dev~~V~W 324 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT--VALWDLRNLNKPLHTFEGHE-DEVFQVEW 324 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc--EEEeechhcccCceeccCCC-cceEEEEe
Confidence 99999999999 5667777889999999999999 5668899999999 88888874 4555555554 68999999
Q ss_pred ccCCC-EEEEEeCCCcEEEEECCCce----------------EEeeccCCCeeEEEEcCCCCE-EEEEeCCCeEEEEEcC
Q 042434 362 TPDGE-NLISVLSDKDIRILNLGTYA----------------ERVISEEHPITSLSVSVDCKN-FIVNLNSQEIHMWDVA 423 (517)
Q Consensus 362 ~~~~~-~l~~~~~dg~i~i~d~~~~~----------------~~~~~~~~~i~~~~~s~~~~~-l~~~~~d~~i~~~d~~ 423 (517)
+|... .+++++.|+.+.+||+..-. ...-+|...|..+.|+|+..+ +++.+.|+.+.||.+.
T Consensus 325 SPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 325 SPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99765 77888999999999996532 112246668999999998766 5667789999999986
Q ss_pred C
Q 042434 424 G 424 (517)
Q Consensus 424 ~ 424 (517)
.
T Consensus 405 ~ 405 (422)
T KOG0264|consen 405 E 405 (422)
T ss_pred c
Confidence 3
No 150
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-20 Score=176.19 Aligned_cols=245 Identities=16% Similarity=0.193 Sum_probs=196.1
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE-EEeCCC-CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC
Q 042434 266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK-HTFGDH-GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN 343 (517)
Q Consensus 266 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~ 343 (517)
-..+|.+++|+.+.+.||.+-.||.|-+|++..+=.. ..+.++ ...|.+++|+ ++..|++.+.+|. |..||+...
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~--i~EwDl~~l 100 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGS--ITEWDLHTL 100 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCce--EEEEecccC
Confidence 4678999999999999999999999999999886433 344444 7789999999 5667888888998 999999865
Q ss_pred eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 042434 344 EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHM 419 (517)
Q Consensus 344 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~ 419 (517)
..........+.|.+++.+|.+..+++|+.||.+..++..... .........+.+++|+|++..++.|+.||.|++
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 5555555555789999999999999999999988888887766 233345688999999999999999999999999
Q ss_pred EEcCCCCccce---EEeCccc-CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCc
Q 042434 420 WDVAGKWEKPF---KYTGHSQ-NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPK 495 (517)
Q Consensus 420 ~d~~~~~~~~~---~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 495 (517)
||...+..... .+.+... ....+.++.+ -....|++|..-|+|.+||...|+++..+..|.+.|.+++..+++ .
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~-Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~-d 258 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLF-LRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE-D 258 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEE-eecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCC-C
Confidence 99987633221 1112222 2222333222 244579999999999999999999999999999999999999998 6
Q ss_pred EEEEeeCCCcEEEeCCCCCC
Q 042434 496 MLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 496 ~l~s~~~dg~v~iw~~~~~~ 515 (517)
.++++|.|+.|.-+...+.+
T Consensus 259 ~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred eEEEccCCCceEEEEecCCc
Confidence 89999999999888776653
No 151
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.5e-22 Score=178.54 Aligned_cols=298 Identities=25% Similarity=0.375 Sum_probs=234.9
Q ss_pred ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCe
Q 042434 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD--DTKLLTCGNAEV 290 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~ 290 (517)
.....|.+|.+.|..+.|+..|..|++||.|..|.+||+..+.. ...-..+|...|....|-|. ...+++++.||.
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~--~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP--KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc--ccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 34567889999999999999999999999999999999975532 33344679999999899884 478999999999
Q ss_pred EEEEECC-CCcE--EEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCeeE---eeeCcCCC---ceEEEE
Q 042434 291 LKLWDVE-TGIC--KHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEIK---AWRGTRIP---KVLDLA 360 (517)
Q Consensus 291 i~iwd~~-~~~~--~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~---~~~~~~~~---~i~~~~ 360 (517)
+++=.+. ++.+ ...+..|.++|.-++.-|+. ..|.+++.|+. +..+|++..... ........ ....++
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~--v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAV--VFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccc--eeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 9987764 3333 23456889999999999964 56889999998 777777642211 11222222 467888
Q ss_pred EccCCC-EEEEEeCCCcEEEEECCCceEE--------------eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 361 VTPDGE-NLISVLSDKDIRILNLGTYAER--------------VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 361 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~--------------~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
..|... .+++++.|..+++||.+..... .......|++++++.++.-++++..|-.|+++.-..+
T Consensus 289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG 368 (559)
T ss_pred cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence 888766 8899999999999998764411 0123346899999999999999999999999954321
Q ss_pred ------------CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCC
Q 042434 426 ------------WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR 493 (517)
Q Consensus 426 ------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~ 493 (517)
......+++|.....+-..-||.|...|+++|+.-|.|.||+-.+++.+..+.+....|+|+.-+|.-
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCC
Confidence 11223388998877766667889999999999999999999999999999999877799999999999
Q ss_pred CcEEEEeeCCCcEEEeCCCCCC
Q 042434 494 PKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 494 ~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
| +|||+|-|.-|+||.+.+.+
T Consensus 449 P-vLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 449 P-VLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred c-hhhccCCccceeeecCCccc
Confidence 5 99999999999999985543
No 152
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.4e-20 Score=160.23 Aligned_cols=249 Identities=17% Similarity=0.250 Sum_probs=177.4
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc-----EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeE
Q 042434 261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI-----CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGI 335 (517)
Q Consensus 261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i 335 (517)
..+++|.+.|++++|+.||++|++++.|++|++|++++.. +++.- -.-+..+.+.|.||.+-+++....|. .+
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~-~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGN-KL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCC-EE
Confidence 4678999999999999999999999999999999997642 22211 12235688999999887766655443 15
Q ss_pred EEEeCC----CC-ee--E-----eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEc
Q 042434 336 FMCDCD----GN-EI--K-----AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVS 402 (517)
Q Consensus 336 ~~~~~~----~~-~~--~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s 402 (517)
++|... |. .. . .+...+.-.+..+.....+.++++++.|..|.+|+++... ...-.....-+..++|
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeC
Confidence 555432 11 11 1 1222333456777788889999999999999999999544 3333344556778999
Q ss_pred CCCCEEEEEeCCCeEEEEEcC---CC----CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC-----
Q 042434 403 VDCKNFIVNLNSQEIHMWDVA---GK----WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN----- 470 (517)
Q Consensus 403 ~~~~~l~~~~~d~~i~~~d~~---~~----~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~----- 470 (517)
|+|+++++++-...+++|.+- .+ ...+..+.||... +.+.+|+++...+++.+.||++++||..-
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa---V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA---VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG 314 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh---eeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence 999999999999999999972 11 2345667788776 66777899999999999999999999752
Q ss_pred --CceeEEec----CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 471 --SKPIEILS----GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 471 --~~~~~~~~----~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
.+.+.+.. .-.+.-..++.+|.| ..||. +....++++..++|+.
T Consensus 315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~-s~gs~l~~~~se~g~~ 364 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLAV-SFGSDLKVFASEDGKD 364 (420)
T ss_pred CCchHhhcCCcchhhcCCCceEEEeCCCC-cEEEe-ecCCceEEEEcccCcc
Confidence 22333321 122334489999999 45543 4445688888777653
No 153
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=1.1e-20 Score=164.23 Aligned_cols=265 Identities=20% Similarity=0.258 Sum_probs=195.3
Q ss_pred EEEeccccCcEEEEEECCCC--CEEEEeeCCCcEEEEEecC-------------CCeeeEEEEeccCCCCEEEEEECCCC
Q 042434 215 VQILTEHKNEVWFVQFSNNG--EYLASSSSDCSAIIWKVLE-------------DSKLTLKHTLRSHQNPVSFVAWSPDD 279 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~~~--~~l~t~~~dg~i~iw~~~~-------------~~~~~~~~~~~~h~~~v~~l~~s~~~ 279 (517)
-...-+|.+.++.+.-++-| .+.|+=+..|.|.||++.. .....++.++.+|...=..++|||-.
T Consensus 144 ~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 144 EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK 223 (440)
T ss_pred cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence 33445689999999888854 4666667899999999732 12346778899999999999999932
Q ss_pred -CeEEEEeCCCeEEEEECCCCcEE---EEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCC--eeEeeeCcC
Q 042434 280 -TKLLTCGNAEVLKLWDVETGICK---HTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGN--EIKAWRGTR 352 (517)
Q Consensus 280 -~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~ 352 (517)
..|++|..-+.|++|...+|.-. ..|.+|+..|-.++|+|. ...|++||.||+ |.+||.+.. ........+
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs--IrIWDiRs~~~~~~~~~kAh 301 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS--IRIWDIRSGPKKAAVSTKAH 301 (440)
T ss_pred ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce--EEEEEecCCCccceeEeecc
Confidence 35888888889999999887643 245679999999999996 558899999999 666676643 222333555
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCC
Q 042434 353 IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKW 426 (517)
Q Consensus 353 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~ 426 (517)
.+.|+.+.|+.+-.+|++|+.||+++|||++..+ ..+..|..+|+++.|+|. ...+++++.|..|.+||+....
T Consensus 302 ~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 302 NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 5689999999998899999999999999999876 367789999999999995 5678888899999999985431
Q ss_pred ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcE
Q 042434 427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTI 506 (517)
Q Consensus 427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v 506 (517)
..... . ..+ . .+ +-|+. .+++....+ ...+..+.|++.-+.++++.+.|| +
T Consensus 382 D~ee~------~---------~~a-----~---~~---L~dlP-pQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dG-f 432 (440)
T KOG0302|consen 382 DEEEI------D---------QEA-----A---EG---LQDLP-PQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDG-F 432 (440)
T ss_pred Chhhh------c---------ccc-----c---cc---hhcCC-ceeEEEecc-hhHhhhheeccCCCCeEEEecccc-e
Confidence 10000 0 000 0 01 11322 233333332 457889999999888999999998 4
Q ss_pred EEeC
Q 042434 507 RIWG 510 (517)
Q Consensus 507 ~iw~ 510 (517)
.||.
T Consensus 433 nVfk 436 (440)
T KOG0302|consen 433 NVFK 436 (440)
T ss_pred eEEE
Confidence 5554
No 154
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=5e-21 Score=175.91 Aligned_cols=243 Identities=19% Similarity=0.293 Sum_probs=187.5
Q ss_pred EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCe-EEEeeCCCceeEEE
Q 042434 259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKR-LVCGSSDTEKGIFM 337 (517)
Q Consensus 259 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d~~v~i~~ 337 (517)
+...+.+|++.|.++...|.|.+|++|+.||+|+||.+.+|.|++++ ...+.|.|++|+|.+.. +++.+.++. +.+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~-~~d~~I~~vaw~P~~~~~vLAvA~~~~--~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV-QFDSEIRSVAWNPLSDLCVLAVAVGEC--VLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE-eecceeEEEEecCCCCceeEEEEecCc--eEE
Confidence 34567899999999999999999999999999999999999999988 55678999999997653 233333333 332
Q ss_pred EeCC-C----------------------CeeEee--------------eCcCCCceEEEEEccCCCEEEEEeCC---CcE
Q 042434 338 CDCD-G----------------------NEIKAW--------------RGTRIPKVLDLAVTPDGENLISVLSD---KDI 377 (517)
Q Consensus 338 ~~~~-~----------------------~~~~~~--------------~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i 377 (517)
.+.. | ..+..| ...+...|..+.|+..|.+|++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 2221 1 000111 11233478899999999999988764 478
Q ss_pred EEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEE
Q 042434 378 RILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA 455 (517)
Q Consensus 378 ~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 455 (517)
.|+++.... ..+....+.+.++.|+|...+|++++. ..|++||+..+ ..+.++. .+...+..+..+|.|.-|+
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq-elvKkL~---tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ-ELVKKLL---TGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHH-HHHHHHh---cCCeeeeeeeecCCCCeEE
Confidence 999998766 334456778999999999999888875 56999999764 3333332 2233477777799999999
Q ss_pred EecCCCcEEEEecCCC-ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 456 SGSENSQIYIWNRRNS-KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 456 ~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
.|+.|+.+..||+.-+ ++..++..|...+++|+||+.- .++++|++||++.|+.
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFH 678 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEe
Confidence 9999999999998754 6888889999999999999999 5999999999999874
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=2.2e-20 Score=159.74 Aligned_cols=289 Identities=19% Similarity=0.330 Sum_probs=211.9
Q ss_pred EeccccCcEEEEEECC-----CCCEEEEeeCCCcEEEEEecCCCeeeEEEEec--cCCCCEEEEEECCC----CCeEEEE
Q 042434 217 ILTEHKNEVWFVQFSN-----NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR--SHQNPVSFVAWSPD----DTKLLTC 285 (517)
Q Consensus 217 ~l~~h~~~v~~~~~s~-----~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~--~h~~~v~~l~~s~~----~~~l~s~ 285 (517)
...+|+.+|..++|++ ....+|+++. ..+.+|....+......+... .|......++|+-| +.++|+|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457999999999985 2346666655 579999987655444444432 36777888899754 4689999
Q ss_pred eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCeeEeeeC---cCCCceEEEEE
Q 042434 286 GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNEIKAWRG---TRIPKVLDLAV 361 (517)
Q Consensus 286 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---~~~~~i~~~~~ 361 (517)
|.-|.|+|.|+.++++...+.+|+..|..+.+.|+ .++++++|.|.. |.+|+.++.......+ .|.+.|.++.|
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~s--vRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHS--VRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCce--EEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 99999999999999999999999999999999996 468899999999 8888888765544433 45568999999
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCce-----EEee-------------------------ccCCCeeEEEEcCCCCEEEEE
Q 042434 362 TPDGENLISVLSDKDIRILNLGTYA-----ERVI-------------------------SEEHPITSLSVSVDCKNFIVN 411 (517)
Q Consensus 362 ~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~-------------------------~~~~~i~~~~~s~~~~~l~~~ 411 (517)
+++|.++++++.|.++++|++...+ .... .|...|.|+.|- |.++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 9999999999999999999998433 0000 011111122221 4678888
Q ss_pred eCCCeEEEEEcCCCCcc-------------ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCcee--EE
Q 042434 412 LNSQEIHMWDVAGKWEK-------------PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI--EI 476 (517)
Q Consensus 412 ~~d~~i~~~d~~~~~~~-------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~ 476 (517)
+.++.|..|....-... ...+.-.....+.+...+ .|-++.||.|...|.|++||++...+. .+
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~-d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt 346 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF-DPWQKMLALGNQSGKVYVWDLDNNEPPKCTT 346 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee-cHHHHHHhhccCCCcEEEEECCCCCCccCce
Confidence 88999999987211111 111222223344444443 777899999999999999999987653 22
Q ss_pred ec--CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 477 LS--GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 477 ~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
+. .-...|...+|+.|+ .+|+...+|++|.-||.-
T Consensus 347 l~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 347 LTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEee
Confidence 22 124679999999999 799999999999999854
No 156
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.1e-20 Score=162.35 Aligned_cols=273 Identities=14% Similarity=0.195 Sum_probs=199.8
Q ss_pred CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC--CCCeEEEEeCCCeEEEEECCCCcEEEEe--CCCC-
Q 042434 235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP--DDTKLLTCGNAEVLKLWDVETGICKHTF--GDHG- 309 (517)
Q Consensus 235 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~- 309 (517)
..+|++.+.|.|++||..++ .....+.++...+..++|.. ....+.+|+.||+|++||+++......+ ..+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 56888889999999999765 45577888888888999976 4578899999999999999887654433 3443
Q ss_pred CceEEEEEeCCCCeEEEeeC--CCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCC-CEEEEEeCCCcEEEEECCC
Q 042434 310 FIVSSCAWFPDSKRLVCGSS--DTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDG-ENLISVLSDKDIRILNLGT 384 (517)
Q Consensus 310 ~~v~~i~~~~~~~~l~~~~~--d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~ 384 (517)
.+..|++.+-.++.+++|+. +....+.+||.+. +.+..+...|...|+++.|+|.. +.|++|+.||.|.+||+..
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 56777777767888888764 2233477777764 44677888888899999999965 5899999999999999976
Q ss_pred ce-----EEeeccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCccceEEeCc----------ccCceEEEeecCC
Q 042434 385 YA-----ERVISEEHPITSLSVSVDC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTGH----------SQNKYVIRSCFGG 448 (517)
Q Consensus 385 ~~-----~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----------~~~~~~i~~~~~s 448 (517)
.. ...+.+...|.++.|..++ +.+.+-+...+..+|++..+. ....+... ....+.|.... +
T Consensus 198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~~d~r~~~~~dY~I~~~~-~ 275 (376)
T KOG1188|consen 198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSADDLRKEDNCDYVINEHS-P 275 (376)
T ss_pred CcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-hhhcccCccchhhhHHhhhhhhheeeccc-C
Confidence 54 4566777889999999876 458888889999999997763 22222111 12234454443 3
Q ss_pred CCCcEEEEecC-CCcEEEEecC---C---CceeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 449 LDGTFIASGSE-NSQIYIWNRR---N---SKPIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 449 ~~~~~l~~~~~-dg~i~iwd~~---~---~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
.++...+.++. -|...++-+. + .+.+..+.+ |...|+++.|...+ .++.|||.||.+.+|....
T Consensus 276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~-~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN-DVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred CCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc-ceeeccCCCceEEEEecCC
Confidence 44555555544 4555555332 2 345566666 77889999998777 7999999999999999543
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=1.5e-20 Score=174.06 Aligned_cols=252 Identities=18% Similarity=0.252 Sum_probs=187.7
Q ss_pred EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEE
Q 042434 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKL 293 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~i 293 (517)
+.....|.+.|..+.|-|....|++++.|.++++||+....- .-...+.+|.+.|.+++|.|++ ..+++|+.||.|.|
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l-~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL-VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL 171 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee-ecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence 466678999999999999777899999999999999975532 2223588999999999999965 56789999999999
Q ss_pred EECCCCc---------------------------EEEEeCCCCCceEE---EEEeCCCCeEEEeeC-CCceeEEEEeCCC
Q 042434 294 WDVETGI---------------------------CKHTFGDHGFIVSS---CAWFPDSKRLVCGSS-DTEKGIFMCDCDG 342 (517)
Q Consensus 294 wd~~~~~---------------------------~~~~~~~~~~~v~~---i~~~~~~~~l~~~~~-d~~v~i~~~~~~~ 342 (517)
||+.-.. .++....+...|.+ +.+..|...|++++. |+. |.+||++.
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~--iKVWDLRk 249 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADST--IKVWDLRK 249 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcc--eEEEeecc
Confidence 9985221 01112234455555 666678889999887 888 77777763
Q ss_pred CeeE---------eeeCc--CCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEE-eecc-CCC----eeEEEEcCCC
Q 042434 343 NEIK---------AWRGT--RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER-VISE-EHP----ITSLSVSVDC 405 (517)
Q Consensus 343 ~~~~---------~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~-~~~----i~~~~~s~~~ 405 (517)
.... .+..+ ..-.+.++.....|.++++.+.|+.|++|++.+.... ...+ ... -..-..+|++
T Consensus 250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~ 329 (720)
T KOG0321|consen 250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD 329 (720)
T ss_pred cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC
Confidence 2211 11111 1225778888888999999999999999999886521 1111 111 2234568999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434 406 KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS 471 (517)
Q Consensus 406 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 471 (517)
.++++|+.|...++|.+...+.....+.+|...+..+.++. ++.+. ++++++|..+++|++..+
T Consensus 330 ~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~p-S~~t~-v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 330 CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLP-SATTP-VATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecc-ccCCC-ceeeccCcceEEEeccCc
Confidence 99999999999999999998888888999998877777665 55555 555599999999998654
No 158
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=9.2e-21 Score=168.87 Aligned_cols=252 Identities=15% Similarity=0.235 Sum_probs=190.9
Q ss_pred EEEeccCCCCEEEEEECCCC--CeEEEEeCCCeEEEEECCCC----cEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCc
Q 042434 260 KHTLRSHQNPVSFVAWSPDD--TKLLTCGNAEVLKLWDVETG----ICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTE 332 (517)
Q Consensus 260 ~~~~~~h~~~v~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~ 332 (517)
......+.+.|++++|+|.. +.+|+|..-|+|-+||+.+. ..+..+..|..+|.++.|+|. ...+++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 34556688999999999965 57888999999999999532 345677899999999999994 568999999999
Q ss_pred eeEEEEeCCCCeeEeeeCc--CCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCC-C
Q 042434 333 KGIFMCDCDGNEIKAWRGT--RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDC-K 406 (517)
Q Consensus 333 v~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~-~ 406 (517)
|..-|..+.....+... ....+.++.|+.+...++.+..=|...+||+++.. .....|...|.+++++|.. .
T Consensus 259 --iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 259 --IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred --eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence 66666665444333222 23367788899888889999888899999999876 3445677799999999954 5
Q ss_pred EEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC----CCceeEEecCCCC
Q 042434 407 NFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR----NSKPIEILSGHSM 482 (517)
Q Consensus 407 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~h~~ 482 (517)
++++++.|++.+|||++........+.........+.+++|||.+..|++.+.|..|+|||.. .-.+..++. |..
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 688899999999999976422221111122223457888889998889999999999999983 334455554 322
Q ss_pred ------CeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 483 ------TVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 483 ------~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
.....+|.|+. .++++|-.-..|-|+|...++
T Consensus 416 ~t~RwlT~fKA~W~P~~-~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDY-NLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred cccccccchhheeCCCc-cEEEEeccCcceeEEcCCCCE
Confidence 23456899998 799999998899999988765
No 159
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=5.2e-21 Score=177.91 Aligned_cols=269 Identities=16% Similarity=0.253 Sum_probs=202.1
Q ss_pred ccccCCCCCccc-cccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec
Q 042434 186 DSCQYHNSSVAI-SLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR 264 (517)
Q Consensus 186 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~ 264 (517)
....|.|+...+ -...+....++...+..++++++|++.|+|++|+.||+.+|+|+.|..|.+|+..-.+.+ -.
T Consensus 16 ~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-----kY 90 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-----KY 90 (1081)
T ss_pred heeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-----ee
Confidence 334466666533 334445567788889999999999999999999999999999999999999986432211 13
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe
Q 042434 265 SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE 344 (517)
Q Consensus 265 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~ 344 (517)
.|++.|.|+.|+|-...|++++-+ ..-+|..+.....+ . .....+.+++|..||.+++.|-.+|++.+. +..+.+
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiR--Nk~gEe 165 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIR--NKNGEE 165 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEee--cCCCCc
Confidence 599999999999999999998765 46788865543221 1 235678899999999999999999996555 444433
Q ss_pred e--EeeeCcCCCceEEEEEccCC-----CEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCe
Q 042434 345 I--KAWRGTRIPKVLDLAVTPDG-----ENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQE 416 (517)
Q Consensus 345 ~--~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 416 (517)
. ..-.++..++|.+++|+|.. ..+++.....++.+|.+.... ......+....++.+.++|.++++|+.|+.
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCc
Confidence 3 23334556789999999963 378888888899999887655 224445566789999999999999999999
Q ss_pred EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 417 IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 417 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
+.+|.-.+ ...-+... -...|..+...|++++++.|+.||+|-.|++.
T Consensus 246 L~~fTR~G--vrLGTvg~---~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 246 LSLFTRDG--VRLGTVGE---QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eEEEeecC--eEEeeccc---cceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99998543 22222222 22334555569999999999999999999864
No 160
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.9e-20 Score=170.40 Aligned_cols=207 Identities=20% Similarity=0.251 Sum_probs=155.1
Q ss_pred cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC--CCCeEEEEeCCCeE
Q 042434 214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP--DDTKLLTCGNAEVL 291 (517)
Q Consensus 214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i 291 (517)
..+.+.||++.|+|+.|+.+|.+|++||.|-.+.|||.-..+. ....-.+|...|.++.|-| +++.+++|+.|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl--lhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL--LHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce--eeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 4567899999999999999999999999999999999863322 2233468999999999998 45788999999999
Q ss_pred EEEECCCC----------cEEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCe--eEee------e--C
Q 042434 292 KLWDVETG----------ICKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNE--IKAW------R--G 350 (517)
Q Consensus 292 ~iwd~~~~----------~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~--~~~~------~--~ 350 (517)
+++|+... ...+.+..|...|..++-.|++ ..+.+++.||+ +..+|.+... .... . .
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt--irQyDiREph~c~p~~~~~~~l~ny~ 197 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT--IRQYDIREPHVCNPDEDCPSILVNYN 197 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc--eeeecccCCccCCccccccHHHHHhc
Confidence 99999742 2344566788999999999988 78999999999 7777765311 1100 0 0
Q ss_pred cCCCceEEEEEccCCC-EEEEEeCCCcEEEEECCCce-------E------------Eee--ccC-----------CCee
Q 042434 351 TRIPKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYA-------E------------RVI--SEE-----------HPIT 397 (517)
Q Consensus 351 ~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-------~------------~~~--~~~-----------~~i~ 397 (517)
...-...++.++|... +|++|+.|...++||.+... . ..+ .+. ..++
T Consensus 198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t 277 (758)
T KOG1310|consen 198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT 277 (758)
T ss_pred hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence 1112467889999654 88899999999999953211 0 000 000 0256
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434 398 SLSVSVDCKNFIVNLNSQEIHMWDVAG 424 (517)
Q Consensus 398 ~~~~s~~~~~l~~~~~d~~i~~~d~~~ 424 (517)
-++|+|+|.-+++.-....|+++|+..
T Consensus 278 ~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 278 YVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred EEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 688999999999988888899998743
No 161
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.87 E-value=1.8e-21 Score=185.30 Aligned_cols=288 Identities=18% Similarity=0.269 Sum_probs=219.3
Q ss_pred ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEE
Q 042434 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLK 292 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 292 (517)
+.++.+.||.++|+|+.|...|.++++|+.|..++||..++. .+.....||.+.|+.++.+.++..+++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 345567899999999999999999999999999999998765 55678999999999999999999999999999999
Q ss_pred EEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC--eeEeeeCcCCCceEEEEEccCCCEEEE
Q 042434 293 LWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN--EIKAWRGTRIPKVLDLAVTPDGENLIS 370 (517)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~ 370 (517)
+|.+.++.++..+.+|++.|++++|+|-. +.+.||++++|.|+.... ............+.++.+-..+..+++
T Consensus 258 vWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred EEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 99999999999999999999999999965 778899966666663211 111111222235677778888889999
Q ss_pred EeCCCcEEEEECCCceEEeeccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434 371 VLSDKDIRILNLGTYAERVISEEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL 449 (517)
Q Consensus 371 ~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 449 (517)
++.|+.-..|...... .+...+.-+..+.+ ..+.+++-.+-.+.+|++.++ .......+|....+++..-.|
T Consensus 334 gs~d~ea~n~e~~~l~----~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpf-- 406 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLA----WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHPF-- 406 (1113)
T ss_pred ccCCcccccchhhHhh----hhccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeeecCC--
Confidence 9999988877654322 00011111111111 134555556778899999887 777778888888777766432
Q ss_pred CCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
+.+...+++.||...|||+-.|.+++...-..+.+..-+|+++| ..++...+-|.+.|.....++
T Consensus 407 n~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdg-ts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDG-TSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred CcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCC-ceEecCCCCCceEEeccCCCc
Confidence 44566789999999999999998877665435677788999999 677777777899998876654
No 162
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2e-20 Score=159.03 Aligned_cols=240 Identities=15% Similarity=0.188 Sum_probs=175.7
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CCeeEee
Q 042434 270 VSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GNEIKAW 348 (517)
Q Consensus 270 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~ 348 (517)
..|+.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++|++||+.|++++.|.. +..||.. +..++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s--i~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS--IKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCce--eEEEeccCCCceeEE
Confidence 789999999999999999999999999999988899999999999999999999999999999 8888876 4555655
Q ss_pred eCcCCCceEEEEEccCCC-EEEEEeCCCcEEEEECCCceEEeeccC------CCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 042434 349 RGTRIPKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYAERVISEE------HPITSLSVSVDCKNFIVNLNSQEIHMWD 421 (517)
Q Consensus 349 ~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~~d~~i~~~d 421 (517)
.... +|....|+|... ..++.-.+..-.+.++........... ....+..|.+.|+++++|+..|.+.+||
T Consensus 104 rf~s--pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 104 RFDS--PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred EccC--ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 5544 899999999654 333333344455555554442222211 1223346889999999999999999999
Q ss_pred cCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC-------c--eeEEecC--CCCCeeEEEec
Q 042434 422 VAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS-------K--PIEILSG--HSMTVNCVSWN 490 (517)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~--~~~~~~~--h~~~v~~v~~~ 490 (517)
..+. ..+..+.-.. ...|..+.++..|++++.-+.|..|+.|+++.- + +.+.++. ....=.+++|+
T Consensus 182 a~t~-e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs 258 (405)
T KOG1273|consen 182 AETL-ECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS 258 (405)
T ss_pred cchh-eeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec
Confidence 9776 4444443322 234666667889999999999999999997621 1 1122211 12334678899
Q ss_pred CCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 491 PKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 491 ~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
.+|..++++...-..++||.-..|.-
T Consensus 259 ~dgeYv~a~s~~aHaLYIWE~~~GsL 284 (405)
T KOG1273|consen 259 GDGEYVCAGSARAHALYIWEKSIGSL 284 (405)
T ss_pred CCccEEEeccccceeEEEEecCCcce
Confidence 99954444444556799999887753
No 163
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.8e-19 Score=172.15 Aligned_cols=289 Identities=20% Similarity=0.244 Sum_probs=208.1
Q ss_pred cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC-CCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 042434 220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE-DSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET 298 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 298 (517)
.|.-.++|.++||+++++|+|..||.|.+|.-.. ...-.....+.-|...|.+++|+++|.+|++||..|.+.+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4777799999999999999999999999997543 222234456778999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee----Eee-------eCcCCCceEEEEEccCCCE
Q 042434 299 GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI----KAW-------RGTRIPKVLDLAVTPDGEN 367 (517)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~----~~~-------~~~~~~~i~~~~~~~~~~~ 367 (517)
++ .+-+..-.++|..+.++||+.+.+....|+. |.+.......+ ..+ .....+-.+.++++|.-+.
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNq--I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQ--IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCCCeEEEEecCce--EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 98 4455567899999999999999999999999 44444422111 111 1112345677899998888
Q ss_pred EEEEeCCCcEEEEECCCceEE----eec---------cCCCeeEEEEcCCCCEEEEEe--------CCC--eEEEEEcCC
Q 042434 368 LISVLSDKDIRILNLGTYAER----VIS---------EEHPITSLSVSVDCKNFIVNL--------NSQ--EIHMWDVAG 424 (517)
Q Consensus 368 l~~~~~dg~i~i~d~~~~~~~----~~~---------~~~~i~~~~~s~~~~~l~~~~--------~d~--~i~~~d~~~ 424 (517)
++..+..|.|.+||+-+.... ... ..-.++.++.+..|.++++.- .|| .+++|-...
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 888999999999999775511 111 112467777777888888763 233 578887654
Q ss_pred C---CccceEEeCcccCceEEEeecCCCCC-cEEEEecCCCcEEEEecCCC----------ceeEEecCCCCCeeEEEec
Q 042434 425 K---WEKPFKYTGHSQNKYVIRSCFGGLDG-TFIASGSENSQIYIWNRRNS----------KPIEILSGHSMTVNCVSWN 490 (517)
Q Consensus 425 ~---~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~v~~~ 490 (517)
. +........ +.....+..++.++.. ...++++.||.+++|-+... .+...-.-|..++++++|+
T Consensus 440 ~~kt~~L~T~I~~-PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 440 NSKTFILNTKINN-PHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CcceeEEEEEEec-CCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 3 112222222 2222233333334433 38999999999999987322 2333323478999999999
Q ss_pred CCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 491 PKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 491 ~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
.|| -++++|.|++|.+||..+.
T Consensus 519 ~dG--slla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 519 QDG--SLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred CCC--cEEEEecCCEEEEecCCCh
Confidence 999 3677888999999999873
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.2e-21 Score=175.49 Aligned_cols=261 Identities=16% Similarity=0.248 Sum_probs=184.3
Q ss_pred EEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC-----CCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCe
Q 042434 216 QILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE-----DSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEV 290 (517)
Q Consensus 216 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~-----~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 290 (517)
.++..|.+.|..++|.|....|++++.||++.+|+++. ...+.++.+|.+|.++|.|++..+++..+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 37788999999999999999999999999999999932 3456788999999999999999999999999999999
Q ss_pred EEEEECCCC----------cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCC-CceEEE
Q 042434 291 LKLWDVETG----------ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRI-PKVLDL 359 (517)
Q Consensus 291 i~iwd~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~-~~i~~~ 359 (517)
|+.|++... .....+.+|...|+.+++++....|++++.||+ ++.|...+.....+..... +...++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgT--vr~w~~~~~~~~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGT--VRLWEPTEESPCTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCce--EEeeccCCcCccccCCccccCCcceE
Confidence 999966421 233466799999999999999999999999999 7777766544322222111 122233
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCc
Q 042434 360 AVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNK 439 (517)
Q Consensus 360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 439 (517)
.+.... .+....+.....+++.+.. .+.. +.++.-... . +. ...
T Consensus 446 d~~ss~--~a~~~~s~~~~~~~~~~~e--------v~s~------------------~~~~~s~~~-~------~~-~~~ 489 (577)
T KOG0642|consen 446 DRTSSR--PAHSLASFRFGYTSIDDME--------VVSD------------------LLIFESSAS-P------GP-RRY 489 (577)
T ss_pred eeccch--hHhhhhhcccccccchhhh--------hhhh------------------eeeccccCC-C------cc-ccc
Confidence 332211 1111111112222211111 0000 111110000 0 00 000
Q ss_pred eEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 440 YVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 440 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
..+..+.++|.+.+.+++.+|+.|+++|..++++++....|...++++++.|+| -+|++++.||.+++|++....
T Consensus 490 ~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 490 PQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred CccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCC-ceEEeecCCceeehhhccchh
Confidence 112233337888899999999999999999999999999999999999999999 599999999999999986543
No 165
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=2.7e-18 Score=162.01 Aligned_cols=272 Identities=13% Similarity=0.122 Sum_probs=176.7
Q ss_pred EEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe-CCCeEEEEECC-CCcE--EEEeCCCCCceE
Q 042434 238 ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG-NAEVLKLWDVE-TGIC--KHTFGDHGFIVS 313 (517)
Q Consensus 238 ~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~-~~~~--~~~~~~~~~~v~ 313 (517)
++...++.|.+|++.+...+.....+. +.+....++++|++++|++++ .++.|.+|++. +++. .... .......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCce
Confidence 344678999999996545555666654 346678899999999987764 47899999996 3432 2222 2334567
Q ss_pred EEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeee-CcCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCCce-E--
Q 042434 314 SCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWR-GTRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGTYA-E-- 387 (517)
Q Consensus 314 ~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~-- 387 (517)
.++++|+++++++++. ++.+.++..+..+....... .........++++|+++++++++ .++.|.+||+.+.. .
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 8999999999888775 66644444433232111111 11123467788999999886555 56899999997632 1
Q ss_pred -----EeeccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCC---CccceEEeCcc----cCceEEEeecCCCCCcEE
Q 042434 388 -----RVISEEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGK---WEKPFKYTGHS----QNKYVIRSCFGGLDGTFI 454 (517)
Q Consensus 388 -----~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~---~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l 454 (517)
...........+.|+|++++++++.. ++.|.+|++... ......+.... ...+. ..+.++|+|+++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA-ADIHITPDGRHL 242 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc-eeEEECCCCCEE
Confidence 11223445678999999999988876 899999999632 11222222111 11111 224458999999
Q ss_pred EEecC-CCcEEEEecCCCceeEEecCC---CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 455 ASGSE-NSQIYIWNRRNSKPIEILSGH---SMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 455 ~~~~~-dg~i~iwd~~~~~~~~~~~~h---~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
+++.. ++.|.+|++.......++.++ ......++++|+|..++++...+++|.+|+++
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 99864 689999998654322222222 13456899999995444455569999999875
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=1.5e-20 Score=160.66 Aligned_cols=243 Identities=17% Similarity=0.294 Sum_probs=183.5
Q ss_pred cccCcEEEEEECCC----CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEE
Q 042434 220 EHKNEVWFVQFSNN----GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLW 294 (517)
Q Consensus 220 ~h~~~v~~~~~s~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iw 294 (517)
.|...-+.++|+-+ ..++|+|+.-|.|+|.|+.++ +....+.+|...|..+.|+|+. ++++++|.|.+|++|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 47788888999764 348899999999999999655 5667889999999999999976 788999999999999
Q ss_pred ECCCCcEEEEeC---CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe-------ee---------------
Q 042434 295 DVETGICKHTFG---DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA-------WR--------------- 349 (517)
Q Consensus 295 d~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-------~~--------------- 349 (517)
++++..|+..|. +|...|.++.|+++|.+|++++.|.+ +.+|++..+.... +.
T Consensus 164 nI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhs--lk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f 241 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHS--LKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF 241 (385)
T ss_pred eccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcce--EEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence 999999999885 78999999999999999999999999 6666665221110 00
Q ss_pred ------CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEE---e---------e----ccCCC--eeEEEEcCCC
Q 042434 350 ------GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER---V---------I----SEEHP--ITSLSVSVDC 405 (517)
Q Consensus 350 ------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~---------~----~~~~~--i~~~~~s~~~ 405 (517)
..|...|.|+.|- |+++++-+.++.|..|........ . . ..... ....+|.|-+
T Consensus 242 p~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~ 319 (385)
T KOG1034|consen 242 PDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ 319 (385)
T ss_pred ccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH
Confidence 0111122223332 578888899999999987322210 0 0 11112 2345667778
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 406 KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 406 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
+.++.|...|.+.+||++...........|......++..+++.||.+|+..++|++|.-||..
T Consensus 320 ~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 320 KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 8999999999999999987644344444455556667788889999999999999999999964
No 167
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=1.8e-17 Score=163.13 Aligned_cols=291 Identities=30% Similarity=0.451 Sum_probs=222.5
Q ss_pred EEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCC-CCEEEEEE-CCCCC-eEEEEeC-CCeE
Q 042434 216 QILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFVAW-SPDDT-KLLTCGN-AEVL 291 (517)
Q Consensus 216 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~l~~-s~~~~-~l~s~~~-dg~i 291 (517)
..+..|...+.++.+.+.+..++.++.|+.+.+|+...+. .....+..+. ..+..+.+ ++++. .++..+. |+.+
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE--KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV 136 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc--eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccE
Confidence 3567899999999999999999999999999999997553 2344555533 37777777 88887 5555445 9999
Q ss_pred EEEECCC-CcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCCC-E
Q 042434 292 KLWDVET-GICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDGE-N 367 (517)
Q Consensus 292 ~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~ 367 (517)
.+|+... ......+..|...|..++|+|++..+++++. ++. +..|+... ..+..... +...+.+++|+|++. .
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 213 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT--IKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGLL 213 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc--eEEEEcCCCceEEeecc-CCCceEEEEEcCCcceE
Confidence 9999988 7788888899999999999999998888885 888 88888885 33344444 556899999999998 5
Q ss_pred EEEEeCCCcEEEEECCCceE---EeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEe
Q 042434 368 LISVLSDKDIRILNLGTYAE---RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS 444 (517)
Q Consensus 368 l~~~~~dg~i~i~d~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~ 444 (517)
+++++.|+.+++||...... ....+.... ...|+|++..+++++.++.+++|++.........+.+|... +..
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---v~~ 289 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS---VLS 289 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc---EEE
Confidence 55559999999999885552 233344443 33899999889999999999999998664423333344333 445
Q ss_pred ecCCCCCcEEEEecCCCcEEEEecCCCceeEEec--CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS--GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
+.+.|++..+++++.|+.+.+||..+........ .|...+..+.|.+++..+..++..|+.+.+|+.....
T Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 5668888888889999999999999888777766 7888899999943322344444688999999987653
No 168
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=1.3e-19 Score=163.18 Aligned_cols=265 Identities=12% Similarity=0.088 Sum_probs=192.9
Q ss_pred CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCe-EEEEeCCCeEEEEECCC--CcEEEEeCCCCCceEEEEEeC
Q 042434 243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTK-LLTCGNAEVLKLWDVET--GICKHTFGDHGFIVSSCAWFP 319 (517)
Q Consensus 243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~i~~~~ 319 (517)
...+++||+............. ....+.++.|+....+ +++.+.|..+++|.-.. ++....-......-.|++...
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t-~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s 89 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQT-AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS 89 (673)
T ss_pred CCceEEeecccccCccccccCC-CCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence 3479999986443222111111 1234899999876642 23445677899997432 222222222223445666666
Q ss_pred CCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeec--cCCCe
Q 042434 320 DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVIS--EEHPI 396 (517)
Q Consensus 320 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~--~~~~i 396 (517)
...++++|+..+. |.+||.+.+.+..+...|.+.|+++.++....+|++++..|.|.|..+.++. ...+. .+..+
T Consensus 90 ~S~y~~sgG~~~~--Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 90 QSLYEISGGQSGC--VKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSV 167 (673)
T ss_pred cceeeeccCcCce--eeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeE
Confidence 6689999999999 8888888777777777777899999999999999999999999999998877 22222 34456
Q ss_pred eEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCCcee
Q 042434 397 TSLSVSVDCKNF-IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNSKPI 474 (517)
Q Consensus 397 ~~~~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~ 474 (517)
.-+.++|..+.+ .+++.+|.|.+||+.+..........|..+...| +|+| +..+|++.+.|..|++||....+..
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gi---cfspsne~l~vsVG~Dkki~~yD~~s~~s~ 244 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGI---CFSPSNEALLVSVGYDKKINIYDIRSQAST 244 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcc---eecCCccceEEEecccceEEEeeccccccc
Confidence 789999987765 4567889999999988744444455666553333 3344 6678899999999999999988777
Q ss_pred EEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 475 EILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 475 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
..+. ...+...++|.++| .+|+.|...|.|..||++..+
T Consensus 245 ~~l~-y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 245 DRLT-YSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ceee-ecCCcceeeecCCc-eEEEeecCCceEEEEecccCC
Confidence 7765 46789999999999 899999999999999998643
No 169
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=6.1e-20 Score=159.76 Aligned_cols=201 Identities=17% Similarity=0.301 Sum_probs=150.6
Q ss_pred CCCCceEEEEEeCCCCeEEE--eeCCCceeEEEEeCCC-----------------CeeEeeeCcCCCceEEEEEccCCC-
Q 042434 307 DHGFIVSSCAWFPDSKRLVC--GSSDTEKGIFMCDCDG-----------------NEIKAWRGTRIPKVLDLAVTPDGE- 366 (517)
Q Consensus 307 ~~~~~v~~i~~~~~~~~l~~--~~~d~~v~i~~~~~~~-----------------~~~~~~~~~~~~~i~~~~~~~~~~- 366 (517)
+|.+.+..+.-++-++-.++ =+..|. |.+|++.. .++..+.++. ..-..++|||-..
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~--V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk-~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGR--VQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK-GEGYGLDWSPIKTG 225 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCc--EEEEEchhhhhhhcCccccccccccCceEEecccC-ccceeeeccccccc
Confidence 45555555555554433333 344555 66666531 2233333333 5678899999433
Q ss_pred EEEEEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccc-eEEeCcccCc
Q 042434 367 NLISVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKP-FKYTGHSQNK 439 (517)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~ 439 (517)
.+++|..-+.|++|...++. ..+..|...|..++|||. ...|++|+.||.|+|||++.+.+.. .....|...
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sD- 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSD- 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCc-
Confidence 57888888999999988765 455678889999999996 4568889999999999998873333 334566655
Q ss_pred eEEEeecCCCCCcEEEEecCCCcEEEEecCC---CceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 440 YVIRSCFGGLDGTFIASGSENSQIYIWNRRN---SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 440 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
+..+.|+.+..+||+|+.||+++|||+++ ++++.+++-|..+|++|.|+|.....|+++|.|..|.|||+.-
T Consensus 305 --VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 305 --VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred --eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 55566677778999999999999999875 5789999999999999999998878999999999999999864
No 170
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=6.4e-19 Score=148.15 Aligned_cols=266 Identities=18% Similarity=0.251 Sum_probs=197.0
Q ss_pred CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCC-eEEEEeCC-------CeEEEEECCCC---------cEEEE
Q 042434 242 SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT-KLLTCGNA-------EVLKLWDVETG---------ICKHT 304 (517)
Q Consensus 242 ~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d-------g~i~iwd~~~~---------~~~~~ 304 (517)
.|+.|.+.+++.+...-..+.+..|.+.|..++-+|-.. .|+++..+ ..+.||.+... +++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 377888888876655455567788899999999999654 45554332 25789988543 23333
Q ss_pred eC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe--eEeee----CcCCCceEEEEEcc--CCCEEEEEeCCC
Q 042434 305 FG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE--IKAWR----GTRIPKVLDLAVTP--DGENLISVLSDK 375 (517)
Q Consensus 305 ~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~----~~~~~~i~~~~~~~--~~~~l~~~~~dg 375 (517)
+. .+-+.|.|+.|.|++..+++-. |.. |.+|+..... ..... .......++-+|+| +|+.+++ ..|+
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~--i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~ 193 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNN--IVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDS 193 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCc--eEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCC
Confidence 33 3456899999999999999877 445 7777765322 22111 11223577788998 5556554 5789
Q ss_pred cEEEEECCCce---EEeeccCCCeeEEEEcCCCCE-EEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCC
Q 042434 376 DIRILNLGTYA---ERVISEEHPITSLSVSVDCKN-FIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG 451 (517)
Q Consensus 376 ~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 451 (517)
++..||+++.. .....|...+..+.|+|+..+ +++++.||.|++||.+....+++.+.+|..-++.+++- +...
T Consensus 194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn--~~hd 271 (370)
T KOG1007|consen 194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFN--PEHD 271 (370)
T ss_pred cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEec--Cccc
Confidence 99999999877 344467778999999998765 66778899999999998888999999999887776653 3356
Q ss_pred cEEEEecCCCcEEEEecCCC-----------------------------ceeEEecCCCCCeeEEEecCCCCcEEEEeeC
Q 042434 452 TFIASGSENSQIYIWNRRNS-----------------------------KPIEILSGHSMTVNCVSWNPKRPKMLASASD 502 (517)
Q Consensus 452 ~~l~~~~~dg~i~iwd~~~~-----------------------------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~ 502 (517)
++|++|+.|..|.+|...+- ..+.++..|...|.+++|+.-.|.++|+-|.
T Consensus 272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY 351 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY 351 (370)
T ss_pred eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence 79999999999999965320 1234666799999999999999999999999
Q ss_pred CCcEEEeCCCC
Q 042434 503 DHTIRIWGPCQ 513 (517)
Q Consensus 503 dg~v~iw~~~~ 513 (517)
||.+.|=++..
T Consensus 352 DGRviIs~V~r 362 (370)
T KOG1007|consen 352 DGRVIISSVPR 362 (370)
T ss_pred CceEEeecCCh
Confidence 99998876653
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=3e-19 Score=156.41 Aligned_cols=206 Identities=18% Similarity=0.280 Sum_probs=166.8
Q ss_pred EeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCe----eeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCe
Q 042434 217 ILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSK----LTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEV 290 (517)
Q Consensus 217 ~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~----~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~ 290 (517)
.+.||+++|..++|+| +...+|+||.|.+|.||.+..+.. ..++..+.+|...|--++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999999 677899999999999999865422 2466789999999999999996 478899999999
Q ss_pred EEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee-CcCCCceEEEEEccCCCEEE
Q 042434 291 LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR-GTRIPKVLDLAVTPDGENLI 369 (517)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~ 369 (517)
|.+||+.+|+.+.++. |...|+++.|+.||.++++++.|.. |.+||.+...+.... .+....-....|-.+|..+-
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk--vRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK--VRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce--eEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 9999999999988886 9999999999999999999999999 888899865554433 44444566677888888555
Q ss_pred EEe---CCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCC
Q 042434 370 SVL---SDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGK 425 (517)
Q Consensus 370 ~~~---~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~ 425 (517)
+|. ++..+.+||..... .........|.---+.++.+.++.++ .|+.|+.|.+...
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 553 36789999987765 34444556666677888887766554 5999999999765
No 172
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.84 E-value=3.5e-18 Score=145.96 Aligned_cols=210 Identities=15% Similarity=0.215 Sum_probs=172.8
Q ss_pred EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434 217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV 296 (517)
Q Consensus 217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 296 (517)
.+.--..+|+|-+|++|+..+|.+.....|.||.......++..+++..|...|+.++|+|..+.|++|+.|..-+||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34445689999999999999999999999999999876668899999999999999999999999999999999999998
Q ss_pred -CCCc--EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe--eEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434 297 -ETGI--CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE--IKAWRGTRIPKVLDLAVTPDGENLISV 371 (517)
Q Consensus 297 -~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~ 371 (517)
..++ +.-.+..+....+++.|+|.++.|++|+....+.|+.+..++.= .+.+.....+.|.++.|+|++-++++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4443 33345578889999999999999999999999888877765421 122333444579999999999999999
Q ss_pred eCCCcEEEEECC-----Cce---------------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 042434 372 LSDKDIRILNLG-----TYA---------------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW 426 (517)
Q Consensus 372 ~~dg~i~i~d~~-----~~~---------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~ 426 (517)
+.|+..++|..- ... .......+.+..+.|+|+|..++-.+.|..+.+-|.....
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 999999999642 110 0111456679999999999999999999999999987653
No 173
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=1.5e-18 Score=146.34 Aligned_cols=240 Identities=21% Similarity=0.237 Sum_probs=183.3
Q ss_pred eccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC---CCeEEEEeCCCeEEE
Q 042434 218 LTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD---DTKLLTCGNAEVLKL 293 (517)
Q Consensus 218 l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~~l~s~~~dg~i~i 293 (517)
-.+|+-.|..+.|-| |...+.+++-|.+++|||.++- +....|+ .++.|.+-+|+|- ..++|+|..|-.|++
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl---Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrL 172 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL---QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRL 172 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeecccc---eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEE
Confidence 357899999999999 7778899999999999999644 3334443 4678899999983 457788888889999
Q ss_pred EECCCCcEEEEeCCCCCceEEEEEeCCCCe-EEEeeCCCceeEEEEeCC--CCeeEee-------------eCcCCCceE
Q 042434 294 WDVETGICKHTFGDHGFIVSSCAWFPDSKR-LVCGSSDTEKGIFMCDCD--GNEIKAW-------------RGTRIPKVL 357 (517)
Q Consensus 294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d~~v~i~~~~~~--~~~~~~~-------------~~~~~~~i~ 357 (517)
-|+.+|.+.+++.+|...|.++.|+|...+ |++|+.||. +.+||.+ ..+...+ ...+.+.+.
T Consensus 173 CDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~--irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn 250 (397)
T KOG4283|consen 173 CDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA--IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN 250 (397)
T ss_pred EeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce--EEEEEeecccceeEEeecccCccCccccccccccceee
Confidence 999999999999999999999999998765 678999999 5566654 2333222 234557899
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCceEEeeccC--------CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc
Q 042434 358 DLAVTPDGENLISVLSDKDIRILNLGTYAERVISEE--------HPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP 429 (517)
Q Consensus 358 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~ 429 (517)
.++|+.++.++++++.|..+++|+..++........ +.-..+. +-+...++.--.++.+.++++-.+ ..+
T Consensus 251 gla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sg-s~i 328 (397)
T KOG4283|consen 251 GLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEG-SFV 328 (397)
T ss_pred eeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCc-eEE
Confidence 999999999999999999999999988762221111 1111122 334444555555688999988776 777
Q ss_pred eEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434 430 FKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR 468 (517)
Q Consensus 430 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 468 (517)
..+..|-. .+.++++.|+-+...+|..|+.|+.|-.
T Consensus 329 r~l~~h~k---~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 329 RRLSTHLK---RINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred Eeeecccc---eeeEEeecCchhhhhccccCCccccccc
Confidence 77777733 3677788899899999999999999976
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.4e-18 Score=170.03 Aligned_cols=289 Identities=17% Similarity=0.189 Sum_probs=202.7
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC--CCCeEEEEeCCCeEEEEEC-CC
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP--DDTKLLTCGNAEVLKLWDV-ET 298 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd~-~~ 298 (517)
..+...+.|+|-...++++...-.|+|||.+.+..+.-...-......|+.+.+-. |..++++|+.||.|+||+- .+
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 33566788899888899988777899999987654332222223346789998865 4578999999999999964 22
Q ss_pred ----CcEEEEeCC-------CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEcc-CC
Q 042434 299 ----GICKHTFGD-------HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTP-DG 365 (517)
Q Consensus 299 ----~~~~~~~~~-------~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~-~~ 365 (517)
.+.+..+.+ ..+.-.-+.|.....+|++++.-.. |.+||...... ..+.......++++.-+. .|
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~--IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS--IRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE--EEEEecccceeEeecccCCCccceeecccccCC
Confidence 223322221 1111234678777677777766555 78888875443 334444444667665543 46
Q ss_pred CEEEEEeCCCcEEEEECCCce-----EEeeccCCC--eeEEEEcCCCCE-EEEEeCCCeEEEEEcCCC-CccceEEeCcc
Q 042434 366 ENLISVLSDKDIRILNLGTYA-----ERVISEEHP--ITSLSVSVDCKN-FIVNLNSQEIHMWDVAGK-WEKPFKYTGHS 436 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~--i~~~~~s~~~~~-l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~ 436 (517)
+.+++|..||.|++||.+... .....|... |..+.+.+.|-. +++|+.+|.|++||++.. .........|.
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 899999999999999987644 334445555 899999987655 999999999999999884 22222333333
Q ss_pred cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC-------CCCCeeEEEecCCCCcEEEEeeCCCcEEEe
Q 042434 437 QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG-------HSMTVNCVSWNPKRPKMLASASDDHTIRIW 509 (517)
Q Consensus 437 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw 509 (517)
.....++++..+++...+|+|+. +.|+||++. |+.+..++. ..+.+.+++|||.. -++|+|+.|.+|.||
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~-~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHR-LLLAAGSADSTVSIY 1378 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchh-HhhhhccCCceEEEe
Confidence 22223667777899999999998 999999976 555544432 24678999999998 689999999999999
Q ss_pred CCCCCC
Q 042434 510 GPCQSS 515 (517)
Q Consensus 510 ~~~~~~ 515 (517)
....+.
T Consensus 1379 s~~k~~ 1384 (1387)
T KOG1517|consen 1379 SCEKPR 1384 (1387)
T ss_pred ecCCcC
Confidence 987654
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.2e-16 Score=157.22 Aligned_cols=288 Identities=30% Similarity=0.467 Sum_probs=221.4
Q ss_pred cccEEEeccccCcEEEEEECCCCCEEEEeeC-CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCC-eEEEEeCCC
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYLASSSS-DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT-KLLTCGNAE 289 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg 289 (517)
......+.+|...|.+++|+|++.++++++. |+.+++|+...+ .....+.+|...|.+++|+|++. .+++++.|+
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG---KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC---ceEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence 5788889999999999999999999999886 999999999653 45567777999999999999998 555559999
Q ss_pred eEEEEECCCCcEEE-EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe--eEeeeCcCCCceEEEEEccCCC
Q 042434 290 VLKLWDVETGICKH-TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE--IKAWRGTRIPKVLDLAVTPDGE 366 (517)
Q Consensus 290 ~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~ 366 (517)
.+.+||...+.... .+..|.... ...|+|++..+++++.|+. +.+|+..... .... ..+...+.++.|+|++.
T Consensus 222 ~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 222 TIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT--IRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGK 297 (466)
T ss_pred cEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc--EEEeeecCCCcEEEEE-ecCCccEEEEEECCCCC
Confidence 99999998888887 677887765 4489999989999999999 6666665322 3333 34456899999999888
Q ss_pred EEEEEeCCCcEEEEECCCce--EEee--ccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEeCcccCceE
Q 042434 367 NLISVLSDKDIRILNLGTYA--ERVI--SEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441 (517)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~--~~~~--~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 441 (517)
.+++++.|+.+.+||..+.. .... .+...+..+.+.+++..++.+ ..|+.+.+|+..... ..........
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~---- 372 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTLEGHSN---- 372 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeEEecCCce----
Confidence 88889999999999988776 2222 455568889884333566666 578889999997763 2222222211
Q ss_pred EEeecCCCCCcEEEE-ecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 442 IRSCFGGLDGTFIAS-GSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 442 i~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
+..+.++++ ..+.. +..++.+.+|+............+...+....+.+++ ..+++++.++.+++|+...
T Consensus 373 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 373 VLSVSFSPD-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDG-KSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEEEECCC-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCC-cEEEEecCCCcEEEEeccC
Confidence 223333443 34444 7889999999999888877776554789999999998 6888899999999999865
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=1.3e-18 Score=153.03 Aligned_cols=258 Identities=22% Similarity=0.291 Sum_probs=180.8
Q ss_pred ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEec--------C-----CCeeeEEEEeccCCCCEEEEEECCCC
Q 042434 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL--------E-----DSKLTLKHTLRSHQNPVSFVAWSPDD 279 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~--------~-----~~~~~~~~~~~~h~~~v~~l~~s~~~ 279 (517)
+....|..|..+|+++.|+|+|..||+|+.+|.|.+|... + .+.+...+.+.+|...|..++|+|++
T Consensus 56 ~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~ 135 (434)
T KOG1009|consen 56 EYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS 135 (434)
T ss_pred EEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC
Confidence 3466788999999999999999999999999999999875 2 23366777889999999999999999
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--Ce-------------
Q 042434 280 TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--NE------------- 344 (517)
Q Consensus 280 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~------------- 344 (517)
.++++++.|..+++||+..|.....+..|...+..++|.|-++++++-+.|....++...... ..
T Consensus 136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 215 (434)
T KOG1009|consen 136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE 215 (434)
T ss_pred ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence 999999999999999999999999999999999999999999999998888753333222211 11
Q ss_pred -----eEeeeCcC-CCceEEEEEccCCCEEEEEeC----CC-----cEEEEECCCce---EEeeccCCCeeEEEEcCC--
Q 042434 345 -----IKAWRGTR-IPKVLDLAVTPDGENLISVLS----DK-----DIRILNLGTYA---ERVISEEHPITSLSVSVD-- 404 (517)
Q Consensus 345 -----~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~----dg-----~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~-- 404 (517)
.+.+.... ......++|+|+|..+++.+. ++ ..++|+-.... ........+...+.++|-
T Consensus 216 ~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~ 295 (434)
T KOG1009|consen 216 REGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYY 295 (434)
T ss_pred CCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEE
Confidence 11111000 113456789999999887643 22 23455433222 222233334444444441
Q ss_pred ---------------CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 405 ---------------CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 405 ---------------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
.+.+++....+.+++||.+........-.-|- ..++-++|++||.+++..|.||...+.-++
T Consensus 296 elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy---~~iTDiaws~dg~~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 296 ELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHY---SAITDIAWSDDGSVLLVSSTDGFCSLVTFE 372 (434)
T ss_pred EeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeee---eeecceeecCCCcEEEEeccCCceEEEEEc
Confidence 12233334456799999876422212222222 236777889999999999999988777766
Q ss_pred CCce
Q 042434 470 NSKP 473 (517)
Q Consensus 470 ~~~~ 473 (517)
..++
T Consensus 373 ~~el 376 (434)
T KOG1009|consen 373 PWEL 376 (434)
T ss_pred chhc
Confidence 5543
No 177
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.82 E-value=8e-18 Score=167.24 Aligned_cols=299 Identities=14% Similarity=0.128 Sum_probs=206.9
Q ss_pred cCCCcccEEEeccccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCC----CeeeEEEEeccCCCCEEEEEECCCCCeE
Q 042434 208 DQIPTETVQILTEHKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLED----SKLTLKHTLRSHQNPVSFVAWSPDDTKL 282 (517)
Q Consensus 208 ~~~~~~~~~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~----~~~~~~~~~~~h~~~v~~l~~s~~~~~l 282 (517)
|...+..+..+..|...|..++.++. +.+++|||.||+|++|+...- .......++....+.+.++...+.++.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 56677889999999999999998874 599999999999999998531 2334444555567889999999999999
Q ss_pred EEEeCCCeEEEEECCCC--c-----EEEEeCCC-CCceE-EEEEeCC-CC-eEEEeeCCCceeEEEEeCCCCee--Eeee
Q 042434 283 LTCGNAEVLKLWDVETG--I-----CKHTFGDH-GFIVS-SCAWFPD-SK-RLVCGSSDTEKGIFMCDCDGNEI--KAWR 349 (517)
Q Consensus 283 ~s~~~dg~i~iwd~~~~--~-----~~~~~~~~-~~~v~-~i~~~~~-~~-~l~~~~~d~~v~i~~~~~~~~~~--~~~~ 349 (517)
|+++.||.|.+.+++.. . +.+....+ .+.+. .-+|... +. .++.+...+. +..||.+.... ....
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~--iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR--IVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccc--eEEecchhhhhHHhhhc
Confidence 99999999999998752 1 12222222 23333 3344332 33 5677777776 88888875322 1112
Q ss_pred CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCC---CEEEEEe--CCCeEEEEE
Q 042434 350 GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDC---KNFIVNL--NSQEIHMWD 421 (517)
Q Consensus 350 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~---~~l~~~~--~d~~i~~~d 421 (517)
....+.|++++.+|.+.++++|+..|.+.+||++-+. ........++..+..+|-. ...++++ ..+.|.+|+
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeee
Confidence 2233589999999999999999999999999998776 3344555678888877733 3444443 467899999
Q ss_pred cCCCCccceEEeCc-----------------ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCcee----------
Q 042434 422 VAGKWEKPFKYTGH-----------------SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPI---------- 474 (517)
Q Consensus 422 ~~~~~~~~~~~~~~-----------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---------- 474 (517)
+.++ .....+... ......+.+.. ...+.++.+|+.|..|+.||.......
T Consensus 1272 ~~~g-~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~-~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~ 1349 (1431)
T KOG1240|consen 1272 METG-LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGV-CEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTS 1349 (1431)
T ss_pred cccC-cceEEEEcCCCCcchhhhcccccCCCCCcccceeeec-ccCCceeeecCCccceeeccCCCcccccccccCcccc
Confidence 9876 333322221 11111222222 344568899999999999997532111
Q ss_pred --------------------------------------EEe--------cCCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434 475 --------------------------------------EIL--------SGHSMTVNCVSWNPKRPKMLASASDDHTIRI 508 (517)
Q Consensus 475 --------------------------------------~~~--------~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i 508 (517)
..+ ..|..+|+++++......++++++.||.|+|
T Consensus 1350 ~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~Iki 1429 (1431)
T KOG1240|consen 1350 YSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKI 1429 (1431)
T ss_pred ccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeee
Confidence 000 1377789999887665569999999999999
Q ss_pred eC
Q 042434 509 WG 510 (517)
Q Consensus 509 w~ 510 (517)
|.
T Consensus 1430 Wk 1431 (1431)
T KOG1240|consen 1430 WK 1431 (1431)
T ss_pred cC
Confidence 95
No 178
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=3.2e-18 Score=166.31 Aligned_cols=236 Identities=16% Similarity=0.179 Sum_probs=170.0
Q ss_pred CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---CeEEEEECCCCcEEEEeCCCCCceEEEEEeC
Q 042434 243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---EVLKLWDVETGICKHTFGDHGFIVSSCAWFP 319 (517)
Q Consensus 243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 319 (517)
+..|.+||..... ...+..|...+.+.+|+|||+.|+.++.+ ..|.+||+.+++.... .........++|+|
T Consensus 183 ~~~i~i~d~dg~~----~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN----QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC----ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECC
Confidence 4689999986432 24456788889999999999999987654 3799999988864322 12222344689999
Q ss_pred CCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCC--ceEEeeccCCC
Q 042434 320 DSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGT--YAERVISEEHP 395 (517)
Q Consensus 320 ~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~~~~~~~~~ 395 (517)
||+.|++++ .+|...||.++..+.....+..+. ..+....|+|||+.++.++ .+|...+|++.. .......+..
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~- 335 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGA-GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG- 335 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCeEeeccCC-CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-
Confidence 999888765 688888999998876666655433 3577899999999877655 567778887643 3332223322
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEec--CCCce
Q 042434 396 ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR--RNSKP 473 (517)
Q Consensus 396 i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~--~~~~~ 473 (517)
....|+|+|+++++.+.++ +..||+.++... ....... .....|+|||++|+.++.+|.+.+|++ .+|+.
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-~lt~~~~-----~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~ 407 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTE-VLSSTFL-----DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF 407 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE-EecCCCC-----CCCceECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 4578999999998887755 566998775222 1111111 123446999999999999998888875 46888
Q ss_pred eEEecCCCCCeeEEEecCCC
Q 042434 474 IEILSGHSMTVNCVSWNPKR 493 (517)
Q Consensus 474 ~~~~~~h~~~v~~v~~~~~~ 493 (517)
...+.+|.+.+..++|+|--
T Consensus 408 ~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 408 KARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred eEEccCCCCCCCCcccCCCC
Confidence 89998899999999999853
No 179
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=8.6e-20 Score=180.48 Aligned_cols=246 Identities=17% Similarity=0.206 Sum_probs=186.7
Q ss_pred cCcEEEEEECCCCCE----EEEeeCCCcEEEEEecC---CCeeeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEE
Q 042434 222 KNEVWFVQFSNNGEY----LASSSSDCSAIIWKVLE---DSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKL 293 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~----l~t~~~dg~i~iw~~~~---~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~i 293 (517)
...-+.++|.+.|.. ||.|..||.|.+||... +.....+.+...|++.|..+.|++.. ++||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456678999987765 88899999999999865 45556677888999999999999976 59999999999999
Q ss_pred EECCCCcEEEEeC--CCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCe-eEeeeCcC-CCceEEEEEccCCC-E
Q 042434 294 WDVETGICKHTFG--DHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTR-IPKVLDLAVTPDGE-N 367 (517)
Q Consensus 294 wd~~~~~~~~~~~--~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~-~~~i~~~~~~~~~~-~ 367 (517)
||+.+-+.-.... .....|.+++|+.. ...|++++.+|. +.+||++.+. +..+..+. ...+..+.|+|++. .
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~--~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR--AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC--ceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 9998755443332 24678999999975 556788888888 7888887653 33333222 23578899999875 5
Q ss_pred EEEEeCCC---cEEEEECCCce---EEeeccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCce
Q 042434 368 LISVLSDK---DIRILNLGTYA---ERVISEEHPITSLSVSVDC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKY 440 (517)
Q Consensus 368 l~~~~~dg---~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 440 (517)
+++++.|. .|.+||++... .....|...|.++.|++.+ .++++++.|+.|.+|+..++ +.+..+.......+
T Consensus 222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~nW~f 300 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQGNWCF 300 (1049)
T ss_pred eeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCCccee
Confidence 66666544 69999988755 4445788899999999966 88899999999999999886 56666655333333
Q ss_pred EEEeecCCCCCcEEEEecCCCcEEEEecCCCc
Q 042434 441 VIRSCFGGLDGTFIASGSENSQIYIWNRRNSK 472 (517)
Q Consensus 441 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 472 (517)
.+ -|...+-..+++++.||.|-||.+..+.
T Consensus 301 dv--~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 301 DV--QWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ee--eecCCCcchhhhheeccceeeeeeecCC
Confidence 33 3323455589999999999999987654
No 180
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=6e-18 Score=144.60 Aligned_cols=237 Identities=22% Similarity=0.375 Sum_probs=175.4
Q ss_pred CEEEEEECCCCCeEEEEeCCCeEEEEECCCC-------c-----EEEEeC-CCCCceEEEEEe-------CCCCeEEEee
Q 042434 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-------I-----CKHTFG-DHGFIVSSCAWF-------PDSKRLVCGS 328 (517)
Q Consensus 269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-------~-----~~~~~~-~~~~~v~~i~~~-------~~~~~l~~~~ 328 (517)
-...+.|+|||..|++-+.|..+.+|++... . ....++ .....|...+|- |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 3456899999999999999999999998421 0 011111 235667777886 5678999999
Q ss_pred CCCceeEEEEeCCCCeeEeeeC-----cCCCceEEEEEccCCCEEEEEeCCCcEEEEEC-CCce----EEe-----eccC
Q 042434 329 SDTEKGIFMCDCDGNEIKAWRG-----TRIPKVLDLAVTPDGENLISVLSDKDIRILNL-GTYA----ERV-----ISEE 393 (517)
Q Consensus 329 ~d~~v~i~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~----~~~-----~~~~ 393 (517)
.+.- |.+||.-+..++.-.. .......+++|+|||..|++| ....|++||+ +.+. ... ....
T Consensus 131 r~~P--Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 131 RDQP--IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred ccCc--eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccc
Confidence 9998 7778876554433211 111246789999999999876 5678999999 4443 111 2235
Q ss_pred CCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC-CCcEEEEecCCC
Q 042434 394 HPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE-NSQIYIWNRRNS 471 (517)
Q Consensus 394 ~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~ 471 (517)
+-+.+++|+|- .+.+++++....+-||.-.+. .+...+.+|..+ |+.+.|.++|+.|++|.. |-.|..||++..
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gG---vThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGG---VTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCC---eeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 56899999995 558899998888888887666 777778888887 555666899999999986 568999999864
Q ss_pred -ceeEEecCCCC-CeeEE--EecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 472 -KPIEILSGHSM-TVNCV--SWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 472 -~~~~~~~~h~~-~v~~v--~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
.++..+..|.+ .-..| ...|++ .+|++|+.||.|++||++.
T Consensus 284 ~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 284 RDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKD 328 (406)
T ss_pred cchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCC
Confidence 57777777765 33334 446888 7999999999999999987
No 181
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.6e-18 Score=152.87 Aligned_cols=238 Identities=16% Similarity=0.197 Sum_probs=165.6
Q ss_pred EEEECCCCCeEEEEeCCC-----eEEEEECCCCcEEEEeCCC----CCceEEEEEeC-------CCCeEEEeeCCCceeE
Q 042434 272 FVAWSPDDTKLLTCGNAE-----VLKLWDVETGICKHTFGDH----GFIVSSCAWFP-------DSKRLVCGSSDTEKGI 335 (517)
Q Consensus 272 ~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~-------~~~~l~~~~~d~~v~i 335 (517)
.+..-|+.++|+++-.+. .|+||+-.... . +-.| .....|+.|.. .|+++|.|+.|..|.|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n-l--YvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN-L--YVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc-e--eEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 344557667777664432 34555533211 1 1122 33445666643 3679999999999555
Q ss_pred EEEeCCCCeeEeee-------------------CcCCCceEEEEEccCC-CEEEEEeCCCcEEEEECCCce--EEeeccC
Q 042434 336 FMCDCDGNEIKAWR-------------------GTRIPKVLDLAVTPDG-ENLISVLSDKDIRILNLGTYA--ERVISEE 393 (517)
Q Consensus 336 ~~~~~~~~~~~~~~-------------------~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~--~~~~~~~ 393 (517)
|..|+.......+. .+|...|..+.|+..- +.|++|+.|.+|.+||+.+++ .....+.
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~ 286 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG 286 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC
Confidence 55554432221111 1344456677777654 478899999999999999988 4444588
Q ss_pred CCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC-
Q 042434 394 HPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS- 471 (517)
Q Consensus 394 ~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~- 471 (517)
..|.++.|+|. +.++++|+.|+++.+.|.+........+.. ...+..+.+-. .....+++++.||+|+-+|+++.
T Consensus 287 k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-~g~VEkv~w~~--~se~~f~~~tddG~v~~~D~R~~~ 363 (463)
T KOG0270|consen 287 KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF-DGEVEKVAWDP--HSENSFFVSTDDGTVYYFDIRNPG 363 (463)
T ss_pred CceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-ccceEEEEecC--CCceeEEEecCCceEEeeecCCCC
Confidence 89999999995 678999999999999999854233333322 22222233322 23457888899999999999875
Q ss_pred ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 472 KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 472 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
+++.+++.|.++|.++++++.-+.+++|+|.|+.|++|++....
T Consensus 364 ~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 364 KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 89999999999999999999988999999999999999987543
No 182
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.9e-17 Score=155.92 Aligned_cols=322 Identities=16% Similarity=0.209 Sum_probs=230.0
Q ss_pred CCCCCc-cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCC---CEEEEeeCCCcEEEEEecCCCee--------
Q 042434 190 YHNSSV-AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNG---EYLASSSSDCSAIIWKVLEDSKL-------- 257 (517)
Q Consensus 190 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~---~~l~t~~~dg~i~iw~~~~~~~~-------- 257 (517)
|.++.. .+.-+.+...++...++.++..+.+|..+++.+.+.|.. .++++++.||.|++||...+.-+
T Consensus 24 fSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~ 103 (792)
T KOG1963|consen 24 FSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP 103 (792)
T ss_pred cccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc
Confidence 334443 444445556667777889999999999999999998854 47889999999999986433110
Q ss_pred -----------------------------------------------------------------------e--------
Q 042434 258 -----------------------------------------------------------------------T-------- 258 (517)
Q Consensus 258 -----------------------------------------------------------------------~-------- 258 (517)
.
T Consensus 104 v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~ 183 (792)
T KOG1963|consen 104 VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKI 183 (792)
T ss_pred eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeE
Confidence 0
Q ss_pred -----EE--EE------eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC--C--cEEEEeCCCCCceEEEEEeCCC
Q 042434 259 -----LK--HT------LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET--G--ICKHTFGDHGFIVSSCAWFPDS 321 (517)
Q Consensus 259 -----~~--~~------~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~--~~~~~~~~~~~~v~~i~~~~~~ 321 (517)
.. +. -..|.-.+++.++||+++++|+|..||.|.+|.--. + .....+.-|...|.+++|+++|
T Consensus 184 ~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G 263 (792)
T KOG1963|consen 184 HIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG 263 (792)
T ss_pred EEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC
Confidence 00 00 012455689999999999999999999999996422 1 2334566788999999999999
Q ss_pred CeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEee----------
Q 042434 322 KRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVI---------- 390 (517)
Q Consensus 322 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~---------- 390 (517)
.+|++|+..|. +..|...++. +.+...-.++|..+.++||+.+.+....|+.|.+....+.. ...+
T Consensus 264 ~~LlSGG~E~V--Lv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~ 340 (792)
T KOG1963|consen 264 AYLLSGGREGV--LVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPST 340 (792)
T ss_pred ceEeecccceE--EEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccc
Confidence 99999999998 8888887766 55555555789999999999999999999999999876544 1111
Q ss_pred --ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeC-----cc---cCceEEEeecCCCCCcEEEEec--
Q 042434 391 --SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG-----HS---QNKYVIRSCFGGLDGTFIASGS-- 458 (517)
Q Consensus 391 --~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----~~---~~~~~i~~~~~s~~~~~l~~~~-- 458 (517)
....-.+.++++|..+.++..+..|.|.+||+.+. ..+..+.. +. .....++.++.+..|.+++|+-
T Consensus 341 k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td-~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~ 419 (792)
T KOG1963|consen 341 KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD-STIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR 419 (792)
T ss_pred cccccccceeEEEcCCCCceeecCCCceEEEEecccc-ceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee
Confidence 11334677899998888999999999999999765 22233221 11 1122345555577799999864
Q ss_pred ------CCC--cEEEEecCCCc----eeEEe-cCCCCCeeEEEecC-CCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 459 ------ENS--QIYIWNRRNSK----PIEIL-SGHSMTVNCVSWNP-KRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 459 ------~dg--~i~iwd~~~~~----~~~~~-~~h~~~v~~v~~~~-~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
.|| .+++|-..... +...+ ..|...+...++.+ .....++|+|.||.++||-+...+
T Consensus 420 ~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~ 490 (792)
T KOG1963|consen 420 IDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDS 490 (792)
T ss_pred ehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccc
Confidence 233 57889755433 22222 35877766666654 332389999999999999885443
No 183
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3e-17 Score=139.49 Aligned_cols=218 Identities=17% Similarity=0.302 Sum_probs=144.9
Q ss_pred ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC----cEEEEeCCCCCceEEEEEeC--CCCeEEEeeCCCceeEEE
Q 042434 264 RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG----ICKHTFGDHGFIVSSCAWFP--DSKRLVCGSSDTEKGIFM 337 (517)
Q Consensus 264 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~d~~v~i~~ 337 (517)
.+|.+-|+++.|.+.|+.+|+|+.|++++|||.... .+....+.|.+.|..+.|.+ -|+.+++++.|++ +.+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt--v~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT--VSI 87 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc--eee
Confidence 568899999999999999999999999999996443 45667789999999999976 3899999999999 445
Q ss_pred EeCC--CC-----e--eEeeeCcCCCceEEEEEccC--CCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCC
Q 042434 338 CDCD--GN-----E--IKAWRGTRIPKVLDLAVTPD--GENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCK 406 (517)
Q Consensus 338 ~~~~--~~-----~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~ 406 (517)
|... .. . .........+.|+++.|.|. |-.+++++.||.++||+.-...
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-------------------- 147 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-------------------- 147 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--------------------
Confidence 5432 10 0 11111223346777777774 4467777777777777654321
Q ss_pred EEEEEeCCCeEEEEEcCCCCcc-ceEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCCC----ceeEE
Q 042434 407 NFIVNLNSQEIHMWDVAGKWEK-PFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNS----KPIEI 476 (517)
Q Consensus 407 ~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~----~~~~~ 476 (517)
.+.-|.+...... +.....+.....++..+..-....+||.|+.+ +.++||....+ ..+.+
T Consensus 148 ---------nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~ 218 (361)
T KOG2445|consen 148 ---------NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE 218 (361)
T ss_pred ---------ccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh
Confidence 1111222111000 00011122222333333222245678888766 57888875443 35677
Q ss_pred ecCCCCCeeEEEecCCC---CcEEEEeeCCCcEEEeCCCC
Q 042434 477 LSGHSMTVNCVSWNPKR---PKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 477 ~~~h~~~v~~v~~~~~~---~~~l~s~~~dg~v~iw~~~~ 513 (517)
+.+|..+|++++|.|+- -.+||+++.|| |+||++..
T Consensus 219 L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 219 LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred cCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 88999999999999963 25899999999 99999874
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=1.7e-17 Score=139.79 Aligned_cols=242 Identities=19% Similarity=0.293 Sum_probs=179.5
Q ss_pred CCEEEEEECC--C-CCeEEEEeC----CCeEEEEEC--CCCcEEEEe-CCCCCceEEEEEeCCCC-----eEEEeeCCCc
Q 042434 268 NPVSFVAWSP--D-DTKLLTCGN----AEVLKLWDV--ETGICKHTF-GDHGFIVSSCAWFPDSK-----RLVCGSSDTE 332 (517)
Q Consensus 268 ~~v~~l~~s~--~-~~~l~s~~~----dg~i~iwd~--~~~~~~~~~-~~~~~~v~~i~~~~~~~-----~l~~~~~d~~ 332 (517)
-++.++.|+. + +.+|+.|+. ...|.|..+ ++++.+..- -.|..+++.+.|.|+.. +|++++. .
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--F 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--e
Confidence 4577888873 2 356777764 345555543 445444322 27889999999999863 4554443 3
Q ss_pred eeEEEEeCC--CCeeEe-------eeCcCCCceEEEEEcc-CCCEEEEEeCCCcEEEEECCCc-----eEEeeccCCCee
Q 042434 333 KGIFMCDCD--GNEIKA-------WRGTRIPKVLDLAVTP-DGENLISVLSDKDIRILNLGTY-----AERVISEEHPIT 397 (517)
Q Consensus 333 v~i~~~~~~--~~~~~~-------~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~i~ 397 (517)
+.+|... ...+.. .......+++++.|+. +-+++.+.+-|-+..|||+.++ +...+.|...|.
T Consensus 123 --LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~ 200 (364)
T KOG0290|consen 123 --LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVY 200 (364)
T ss_pred --EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCccee
Confidence 5555544 222211 1223345788999987 5568889999999999999986 367889999999
Q ss_pred EEEEcCCC-CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC-cEEEEecCCC-cee
Q 042434 398 SLSVSVDC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS-QIYIWNRRNS-KPI 474 (517)
Q Consensus 398 ~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~-~~~ 474 (517)
.++|...+ +.|++.+.||.+++||++........+.........++..+...|-+++|+-..|+ .|.|.|++.. .++
T Consensus 201 DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv 280 (364)
T KOG0290|consen 201 DIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV 280 (364)
T ss_pred EEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce
Confidence 99999865 46888899999999999987555555655554455566666566778898877664 7999999864 689
Q ss_pred EEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 475 EILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 475 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
..+.+|.+.|++++|.|..+..++|||+|..+.|||+.+
T Consensus 281 a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 281 ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 999999999999999999989999999999999999975
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=3e-16 Score=148.09 Aligned_cols=250 Identities=10% Similarity=0.132 Sum_probs=163.9
Q ss_pred cEEEeccccCcEEEEEECCCCCEEEEee-CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-CCeE
Q 042434 214 TVQILTEHKNEVWFVQFSNNGEYLASSS-SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-AEVL 291 (517)
Q Consensus 214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i 291 (517)
.+..+. +.+....++++|++++|++++ .++.|.+|++.....+....... ..+....++|+|+++++++++. ++.|
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v 104 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCV 104 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeE
Confidence 444444 446677899999999887664 57889999997433444333332 3345678999999999988765 7899
Q ss_pred EEEECCC-C---cEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCC-CeeE-----eeeCcCCCceEEEE
Q 042434 292 KLWDVET-G---ICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDG-NEIK-----AWRGTRIPKVLDLA 360 (517)
Q Consensus 292 ~iwd~~~-~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~-~~~~-----~~~~~~~~~i~~~~ 360 (517)
.+|++.+ + +.+..+ .+.....+++++|+++++++++. ++. |++|+... ..+. ............+.
T Consensus 105 ~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~--v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~ 181 (330)
T PRK11028 105 SVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDR--IRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV 181 (330)
T ss_pred EEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCE--EEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence 9999964 3 223333 22344677889999998876554 577 55565543 2221 11111223467899
Q ss_pred EccCCCEEEEEeC-CCcEEEEECCC--ceE----Eeec------cCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCC
Q 042434 361 VTPDGENLISVLS-DKDIRILNLGT--YAE----RVIS------EEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGKW 426 (517)
Q Consensus 361 ~~~~~~~l~~~~~-dg~i~i~d~~~--~~~----~~~~------~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~ 426 (517)
|+|+|++++++.. ++.|.+||+.. +.. .... .......+.++|++++++++.. ++.|.+|++....
T Consensus 182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence 9999999988876 89999999973 221 1111 1112335889999999998865 7899999996442
Q ss_pred ccceEEeCcccCceEEEeecCCCCCcEEEEecC-CCcEEEEecC
Q 042434 427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE-NSQIYIWNRR 469 (517)
Q Consensus 427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~ 469 (517)
. ...+.++.......+.+.++|+|++|++++. +++|.+|++.
T Consensus 262 ~-~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 262 S-VLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred C-eEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 1 1222222211112234456899999998775 8899999874
No 186
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=3.3e-17 Score=157.81 Aligned_cols=252 Identities=17% Similarity=0.225 Sum_probs=179.8
Q ss_pred ccEEEeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCe--e-eEEEEeccCCCCEEEEEECCCC--CeEEEEe
Q 042434 213 ETVQILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSK--L-TLKHTLRSHQNPVSFVAWSPDD--TKLLTCG 286 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~--~-~~~~~~~~h~~~v~~l~~s~~~--~~l~s~~ 286 (517)
.+...+ .-...|+|+.|+| +..++|.|+.+|.|.+||+..+.. . ........|..+|+.+.|..+. .-+++++
T Consensus 234 ~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s 312 (555)
T KOG1587|consen 234 TPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS 312 (555)
T ss_pred CceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe
Confidence 344344 3678999999999 778899999999999999976543 1 1122335689999999997654 4499999
Q ss_pred CCCeEEEEECCCCcEE------EEeC------CCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCCee--------
Q 042434 287 NAEVLKLWDVETGICK------HTFG------DHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGNEI-------- 345 (517)
Q Consensus 287 ~dg~i~iwd~~~~~~~------~~~~------~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~-------- 345 (517)
.||.|..|+++.-... .... .....+++++|.+ +...|++|+.+|. |+.....+...
T Consensus 313 sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~--v~~~~r~g~~~~~~~~~~~ 390 (555)
T KOG1587|consen 313 SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGK--VYKGCRKGYTPAPEVSYKG 390 (555)
T ss_pred cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcE--EEEEeccCCcccccccccc
Confidence 9999999987643221 1111 2245688999988 4668999999998 66544332111
Q ss_pred EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCc-e--EEeeccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEE
Q 042434 346 KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTY-A--ERVISEEHPITSLSVSVDC-KNFIVNLNSQEIHMWD 421 (517)
Q Consensus 346 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~--~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~~~d 421 (517)
......+.++|.++.++|-+..++..+.|.++++|..... . .....+...+++++|||-. ..|+++..+|.+.+||
T Consensus 391 ~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 391 HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 1223345578999999998887666666999999998732 2 2333445569999999964 5677777899999999
Q ss_pred cCCCCc-cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC
Q 042434 422 VAGKWE-KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN 470 (517)
Q Consensus 422 ~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 470 (517)
+..... ++...... .......+++++|+.|++|...|.+++|++..
T Consensus 471 Ll~~~~~Pv~s~~~~---~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 471 LLQDDEEPVLSQKVC---SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred hhccccCCccccccc---ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 965422 22222222 34566777899999999999999999999863
No 187
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=2.7e-17 Score=138.46 Aligned_cols=249 Identities=18% Similarity=0.285 Sum_probs=179.5
Q ss_pred EEEeccccCcEEEEEECC-CCCEEEEeeCC-------CcEEEEEecCCCe------eeEEEEec-cCCCCEEEEEECCCC
Q 042434 215 VQILTEHKNEVWFVQFSN-NGEYLASSSSD-------CSAIIWKVLEDSK------LTLKHTLR-SHQNPVSFVAWSPDD 279 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~-~~~~l~t~~~d-------g~i~iw~~~~~~~------~~~~~~~~-~h~~~v~~l~~s~~~ 279 (517)
.++|..|.+.|+.++-+| +.+.|+|+..+ -.+.||.+..... ++.+..+. .+-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 356778999999999999 66677776442 2467999864322 22233332 355689999999999
Q ss_pred CeEEEEeCCCeEEEEECCCCcE-EEEeC-----CCCCceEEEEEeC--CCCeEEEeeCCCceeEEEEeCCC-CeeEeeeC
Q 042434 280 TKLLTCGNAEVLKLWDVETGIC-KHTFG-----DHGFIVSSCAWFP--DSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRG 350 (517)
Q Consensus 280 ~~l~s~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~i~~~~--~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~ 350 (517)
..+++-. |..|.+|++..+.. +..+. .+....++-+|+| +++.+++.+ |++ ++.||.++ ++...+..
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~t--l~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DST--LQFWDLRTMKKNNSIED 211 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCc--EEEEEccchhhhcchhh
Confidence 9999876 78999999988765 33332 3456778889999 677777654 556 89999885 44455666
Q ss_pred cCCCceEEEEEccCCC-EEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCC
Q 042434 351 TRIPKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 351 ~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~ 425 (517)
.|...+..+.|+|+.+ +|++++.||.|++||++..+ .....|.+.+.++.|+|. ...+++++.|..|.+|-...-
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 6666899999999877 67889999999999999877 556678899999999995 567788899999999876331
Q ss_pred C----------------------------ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 426 W----------------------------EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 426 ~----------------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
. ....++..|...++.+. +.+.|.-.+|+-+.||.+.|=.+.
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~a--WSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALA--WSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEe--eccCCCeeEEEeccCceEEeecCC
Confidence 1 11123444555544332 334566677888999998876654
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=144.10 Aligned_cols=268 Identities=15% Similarity=0.189 Sum_probs=187.6
Q ss_pred ccccccCCCcccccCCCcccEEEeccccCcEEEEEECC--CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCC-CCEE
Q 042434 195 VAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSN--NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVS 271 (517)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~ 271 (517)
.+++++.+....++.-..+.+..+++|...++.++|.. .+..+.+|+.||+|++||+....+... ..+..+. .+..
T Consensus 43 vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~-~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR-ISWTQQSGTPFI 121 (376)
T ss_pred EEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh-eeccCCCCCcce
Confidence 47888888888889888999999999999999999977 567899999999999999986654333 3344555 5777
Q ss_pred EEEECCCCCeEEEEeC----CCeEEEEECCCCcE-EEEe-CCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCCe
Q 042434 272 FVAWSPDDTKLLTCGN----AEVLKLWDVETGIC-KHTF-GDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGNE 344 (517)
Q Consensus 272 ~l~~s~~~~~l~s~~~----dg~i~iwd~~~~~~-~~~~-~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~ 344 (517)
|++....++.+++|.. +-.|.+||++..+. ++.+ ..|...|+++.|+| +.+.|++||.||. +-++|+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL--vnlfD~~~d~ 199 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL--VNLFDTKKDN 199 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce--EEeeecCCCc
Confidence 8887777888888743 56899999988765 5444 57999999999999 5679999999999 5566665321
Q ss_pred ----eEeeeCcCCCceEEEEEccCC-CEEEEEeCCCcEEEEECCCceEEeeccCCCe------------eEE-EEcC-CC
Q 042434 345 ----IKAWRGTRIPKVLDLAVTPDG-ENLISVLSDKDIRILNLGTYAERVISEEHPI------------TSL-SVSV-DC 405 (517)
Q Consensus 345 ----~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i------------~~~-~~s~-~~ 405 (517)
+.... .+...|.++.|..++ +.+.+-+...+..+|+++.+..........+ .-+ ..+| +.
T Consensus 200 EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~ 278 (376)
T KOG1188|consen 200 EEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDK 278 (376)
T ss_pred chhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCc
Confidence 11111 223469999999877 4688889999999999987762222111111 011 1123 33
Q ss_pred CEEEEEeC-CCeEEEEEcC---CC--CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434 406 KNFIVNLN-SQEIHMWDVA---GK--WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR 468 (517)
Q Consensus 406 ~~l~~~~~-d~~i~~~d~~---~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 468 (517)
..+++++. .+...++-+. .+ ...+..+.++ ....++.++|...+.++++|++||.+.+|..
T Consensus 279 ~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~--~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 279 DTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG--HEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ceEEEeccccCceeEEEeeecccccccCccccccCC--cHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 44444443 4554444432 11 1223333332 2334677777888999999999999999985
No 189
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=4.3e-17 Score=143.03 Aligned_cols=228 Identities=17% Similarity=0.261 Sum_probs=165.9
Q ss_pred EEeccCCCCEEEEEECC-CCCeEEEEeCCCeEEEEECCCC-------cEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCC
Q 042434 261 HTLRSHQNPVSFVAWSP-DDTKLLTCGNAEVLKLWDVETG-------ICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDT 331 (517)
Q Consensus 261 ~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~ 331 (517)
..+.+|+++|..++|+| +...||+||.|.+|.||.+..+ +++..+.+|...|-.++|+|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 45679999999999999 5578999999999999999654 456677899999999999996 56788999999
Q ss_pred ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEe--ecc-CCCeeEEEEcCCCCEE
Q 042434 332 EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERV--ISE-EHPITSLSVSVDCKNF 408 (517)
Q Consensus 332 ~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~-~~~i~~~~~s~~~~~l 408 (517)
. |.+|+..+........ |...|.++.|+.||.++++.+.|..|+|||.++++... ..| +.....+.|-.+|..+
T Consensus 155 ~--v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 155 T--VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred e--EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence 9 8888887655433333 66799999999999999999999999999999988322 233 3456677788888855
Q ss_pred EEEe---CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEE-EecCCCcEEEEecCCCce-eEEecC--CC
Q 042434 409 IVNL---NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA-SGSENSQIYIWNRRNSKP-IEILSG--HS 481 (517)
Q Consensus 409 ~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~--h~ 481 (517)
-+|. .+..+.+||..+.... ..+...... ..+-.-++.+|.+.++ +|-.|+.|+.|.+.+..+ ++.+.. ..
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP-~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~ 309 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEP-IALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK 309 (472)
T ss_pred eeccccccccceeccCcccccCc-ceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence 5553 3678999998765333 222222221 1244556688888775 455689999999876653 222221 23
Q ss_pred CCeeEEEecCCC
Q 042434 482 MTVNCVSWNPKR 493 (517)
Q Consensus 482 ~~v~~v~~~~~~ 493 (517)
.+-.++.|-|..
T Consensus 310 epQRG~g~mPKR 321 (472)
T KOG0303|consen 310 EPQRGMGFMPKR 321 (472)
T ss_pred Cccccccccccc
Confidence 344555565543
No 190
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7.6e-16 Score=126.71 Aligned_cols=272 Identities=14% Similarity=0.168 Sum_probs=189.6
Q ss_pred CcEEEEEECCCCCEEEEeeCCCcEEEEEecCC-------CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434 223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLED-------SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD 295 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~-------~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 295 (517)
..|.+-+++|.+++|++|+.+|.|.+..+.+- .....+...++|+++|..++|+ ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 44666789999999999999999999988431 1123445568999999999998 45777765 59999997
Q ss_pred CCCCcE------EEEe--CC-----CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEc
Q 042434 296 VETGIC------KHTF--GD-----HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVT 362 (517)
Q Consensus 296 ~~~~~~------~~~~--~~-----~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 362 (517)
...... .... .. .-..|.++...|..+.+++++.|+. ++.||++...++....+|.+.+.++.--
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~--~y~~dlE~G~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGV--IYQVDLEDGRIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeE--EEEEEecCCEEEEEEcCCcceeeeeeec
Confidence 754321 1111 11 1245788999998888888888888 9999999888877777777899999886
Q ss_pred cCCCEEEEEeCCCcEEEEECCCceE-Eeecc-----------CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccce
Q 042434 363 PDGENLISVLSDKDIRILNLGTYAE-RVISE-----------EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPF 430 (517)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~-----------~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 430 (517)
.....+++|+.||++++||+++.+. ..+.. ...|.+++ -+..++++|+ ...+.+|.++.. ....
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrss-e~t~ 241 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSS-ESTC 241 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCC-CceE
Confidence 7777899999999999999999872 22211 11234444 3455666554 567999999875 3333
Q ss_pred EEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 431 KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 431 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
.+.-.. . +..+. -+...+++++..+.|.-|.+. |.+-...+......++..|+..--+++..++....+.|+.
T Consensus 242 vfpipa-~---v~~v~--F~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 242 VFPIPA-R---VHLVD--FVDDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred EEeccc-c---eeEee--eecceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 332211 1 11222 245578888888889999864 6666666665666777777654335666777777777753
No 191
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=1.9e-16 Score=133.55 Aligned_cols=281 Identities=19% Similarity=0.259 Sum_probs=197.1
Q ss_pred EEEeccccCcEEEEEECC---CCCEEEEeeC----CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-----CeE
Q 042434 215 VQILTEHKNEVWFVQFSN---NGEYLASSSS----DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-----TKL 282 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~---~~~~l~t~~~----dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-----~~l 282 (517)
+..+.. .-.++++.||. .+.+||.|+. .+.|.|-.+.....-.....-..|.-+++.+.|.|+. .+|
T Consensus 38 iy~Y~a-p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 38 IYTYNA-PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred EEEecC-CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence 444442 34677888884 3457888874 4567777665332211112225689999999999986 345
Q ss_pred EEEeCCCeEEEEECCCC--cEE--EE-----eCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCC---eeEeee
Q 042434 283 LTCGNAEVLKLWDVETG--ICK--HT-----FGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGN---EIKAWR 349 (517)
Q Consensus 283 ~s~~~dg~i~iwd~~~~--~~~--~~-----~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~---~~~~~~ 349 (517)
|++ +..+++|.+... +.. .. -..+..++++..|+. +.+++.+++-|-+ ..+||+... .+++..
T Consensus 117 ATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT--CTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 117 ATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT--CTIWDIETGVSGTVKTQL 192 (364)
T ss_pred hcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe--EEEEEEeeccccceeeEE
Confidence 554 337999998742 111 11 124578899999987 6788999999999 666666543 345555
Q ss_pred CcCCCceEEEEEccCCC-EEEEEeCCCcEEEEECCCce-E-Eeec---cCCCeeEEEEcCC-CCEEEEEeC-CCeEEEEE
Q 042434 350 GTRIPKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYA-E-RVIS---EEHPITSLSVSVD-CKNFIVNLN-SQEIHMWD 421 (517)
Q Consensus 350 ~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~-~~~~---~~~~i~~~~~s~~-~~~l~~~~~-d~~i~~~d 421 (517)
..|...|.+++|..++. .+++.+.||.+++||++... . .... ...+...++|++. .+++++-.. ...|.+.|
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 55666999999998665 78899999999999999887 2 2222 1446778888874 456666554 45799999
Q ss_pred cCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc------eeEEecCCCCCeeEEEecCCCCc
Q 042434 422 VAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK------PIEILSGHSMTVNCVSWNPKRPK 495 (517)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~v~~~~~~~~ 495 (517)
++.....+..+.+|...+..|.+. ......|++++.|..+.+||+.+.- ++..+. -.+.|+.+.|++..+.
T Consensus 273 iR~P~tpva~L~~H~a~VNgIaWa--PhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 273 IRVPCTPVARLRNHQASVNGIAWA--PHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPD 349 (364)
T ss_pred ecCCCcceehhhcCcccccceEec--CCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCC
Confidence 999888899999999886666554 2346789999999999999987531 233333 4678999999988777
Q ss_pred EEEEeeCC
Q 042434 496 MLASASDD 503 (517)
Q Consensus 496 ~l~s~~~d 503 (517)
.++.+...
T Consensus 350 wiai~~~k 357 (364)
T KOG0290|consen 350 WIAICFGK 357 (364)
T ss_pred EEEEEecC
Confidence 78776644
No 192
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=2.3e-16 Score=152.04 Aligned_cols=262 Identities=15% Similarity=0.227 Sum_probs=189.2
Q ss_pred CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCCCcE--EE----EeCCCCCceEEE
Q 042434 243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGIC--KH----TFGDHGFIVSSC 315 (517)
Q Consensus 243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~~i 315 (517)
++.+.||++..... +...+. -...|+|+.|+|. ..+++.|+.+|.|.+||+..+.. .. ....|..+++.+
T Consensus 221 ~~~~~vW~~~~p~~--Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNT--PELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred CceEEEEecCCCCC--ceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 35799999976533 333332 4688999999995 57788888999999999987654 22 223689999999
Q ss_pred EEeCCCCe--EEEeeCCCceeEEEEeCCC--CeeEee----------eCcCCCceEEEEEccCC-CEEEEEeCCCcEEEE
Q 042434 316 AWFPDSKR--LVCGSSDTEKGIFMCDCDG--NEIKAW----------RGTRIPKVLDLAVTPDG-ENLISVLSDKDIRIL 380 (517)
Q Consensus 316 ~~~~~~~~--l~~~~~d~~v~i~~~~~~~--~~~~~~----------~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~ 380 (517)
.|..+..- |++++.||. |..|+++. .+.... .......+++++|.+.. ..+++|+.+|.|..-
T Consensus 298 vW~~~~~~~~f~s~ssDG~--i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGS--ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred EEeccCCCCceEEEecCCc--EeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence 99876544 999999999 66666553 111110 11223368889998854 578999999998874
Q ss_pred ECCCce----------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCC
Q 042434 381 NLGTYA----------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLD 450 (517)
Q Consensus 381 d~~~~~----------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 450 (517)
+-.... .....|.++|+++.++|=+..++..+.|.++++|.......+...+..+... +..+.|||-
T Consensus 376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~---v~~vaWSpt 452 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY---VTDVAWSPT 452 (555)
T ss_pred eccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce---eeeeEEcCc
Confidence 433222 2445678899999999977666666669999999986333555555444433 555666775
Q ss_pred C-cEEEEecCCCcEEEEecCCC--ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 451 G-TFIASGSENSQIYIWNRRNS--KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 451 ~-~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
- ..++++..||.|.+||+... .++.+...+....+.+.|++.| .+++.|...|++++|++..
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNG-KLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCC-cEEEEecCCCcEEEEEcCc
Confidence 4 57788888999999998654 5666666667778889999989 7999999999999999853
No 193
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.1e-17 Score=148.37 Aligned_cols=193 Identities=21% Similarity=0.257 Sum_probs=147.3
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe
Q 042434 226 WFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF 305 (517)
Q Consensus 226 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 305 (517)
.+++|+++|..|++|+.||++|||++.+. ........|...|.++.|+|||++|++.+.| ..+||++++|.++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 78999999999999999999999998543 3445667799999999999999999999999 9999999999777666
Q ss_pred CC--CCCceEEEEEeCCC---CeEEEe--eCCCceeEEEEeCC--C--CeeEeee-CcCCCceEEEEEccCCCEEEEEeC
Q 042434 306 GD--HGFIVSSCAWFPDS---KRLVCG--SSDTEKGIFMCDCD--G--NEIKAWR-GTRIPKVLDLAVTPDGENLISVLS 373 (517)
Q Consensus 306 ~~--~~~~v~~i~~~~~~---~~l~~~--~~d~~v~i~~~~~~--~--~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~ 373 (517)
.. .+.....+.|+.|+ .+.+.+ ...+. +..++.. . ..++... ......|.+++.+++|++++.|+.
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~--v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGG--VRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCc--eeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 42 34556778888876 333333 23333 3333322 1 1111111 111237999999999999999999
Q ss_pred CCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434 374 DKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG 424 (517)
Q Consensus 374 dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 424 (517)
||.|.|++..+.+ .....|...|+.+.|+|+.++++..+.+..+.+..+..
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999998877 33345777899999999999999999898888887743
No 194
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=7.2e-17 Score=138.41 Aligned_cols=278 Identities=18% Similarity=0.289 Sum_probs=191.3
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE-eCCCeEEEEECCCCcEEEEe
Q 042434 227 FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC-GNAEVLKLWDVETGICKHTF 305 (517)
Q Consensus 227 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~ 305 (517)
-++|||+|+|+|+++.- .+.|-|.++ ++..+.+ .--+.|..+.|..|..+++.+ ..++.|.+|++...+-...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~t---lq~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSET---LQLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccch---hhHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 46899999999999765 677766632 2222211 123568889999998777655 56889999999988888888
Q ss_pred CCCCCceEEEEEeCCCCeEEE-eeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC----------
Q 042434 306 GDHGFIVSSCAWFPDSKRLVC-GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD---------- 374 (517)
Q Consensus 306 ~~~~~~v~~i~~~~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------- 374 (517)
.....++.+++|+|||+.++. ...+-. |-+|.+.+.......... ..+..++|+|||++.+..+.-
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lr--iTVWSL~t~~~~~~~~pK-~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLR--ITVWSLNTQKGYLLPHPK-TNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeE--EEEEEeccceeEEecccc-cCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 888999999999999976655 445555 777777765554443333 246788899998887766541
Q ss_pred --------------------------CcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC---
Q 042434 375 --------------------------KDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG--- 424 (517)
Q Consensus 375 --------------------------g~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~--- 424 (517)
..+.+||.--.- .....-+-.+..++|+|.++++++|+.|+.+++.+--+
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~ 244 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP 244 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence 234455532111 12223345688899999999999999999887754211
Q ss_pred ------------C-------------------------------C----------ccceE---E---eCcccCceEEEee
Q 042434 425 ------------K-------------------------------W----------EKPFK---Y---TGHSQNKYVIRSC 445 (517)
Q Consensus 425 ------------~-------------------------------~----------~~~~~---~---~~~~~~~~~i~~~ 445 (517)
. + ..... + ....++...+..+
T Consensus 245 f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~l 324 (447)
T KOG4497|consen 245 FGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKL 324 (447)
T ss_pred hhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccccee
Confidence 0 0 00000 0 1111223345567
Q ss_pred cCCCCCcEEEEecCC--CcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 446 FGGLDGTFIASGSEN--SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 446 ~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
+|++|..|+++-.+. ..+.+||++..++...+. ...+|....|+|..+ .|+.+.....+++|.+...
T Consensus 325 afs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~p-rL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 325 AFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRP-RLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred eecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCc-eEEEEcCCceEEEEcCCCc
Confidence 789999999987654 579999999887766665 578999999999996 5666666667999988653
No 195
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.2e-16 Score=140.08 Aligned_cols=250 Identities=14% Similarity=0.137 Sum_probs=188.4
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC------CCcEEEEeC-CCCCceEEEEEeCCCCeEEEeeCCCce
Q 042434 261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE------TGICKHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEK 333 (517)
Q Consensus 261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~------~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v 333 (517)
+.+.+|.+.|.++.|+.++++|++|+.|..+++|+++ +.+++.... .|...|.|++|....+.+++|+.+++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~- 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT- 128 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce-
Confidence 4567899999999999999999999999999999985 345565554 45689999999999999999999999
Q ss_pred eEEEEeCCCCeeEeeeCc--CCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEcCC-C
Q 042434 334 GIFMCDCDGNEIKAWRGT--RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVSVD-C 405 (517)
Q Consensus 334 ~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~-~ 405 (517)
|...|..+++......+ ..+.|..+..+|..+.+++.+.++.|.+||.+... ............+.|+|. .
T Consensus 129 -VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 129 -VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred -eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 77788876554433332 23589999999999999999999999999998765 122234456788899995 5
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccceEEeCccc---CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC-
Q 042434 406 KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ---NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS- 481 (517)
Q Consensus 406 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~- 481 (517)
..+++++..+.+-+||.+.....+..+.+... .........|+|+|+.+.+--....-.+||+.+.++...-..|.
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 67788888899999999876555554443322 12222344568999988887766667788887755432222232
Q ss_pred ------CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 482 ------MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 482 ------~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
..+.+++|..+. -++||+++-.|++|.+...
T Consensus 288 ~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred Ccceeeeeeeeeeeecce--eeeccCcccceEEEecCCC
Confidence 356788888775 5999999999999998643
No 196
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=1.5e-18 Score=165.63 Aligned_cols=243 Identities=17% Similarity=0.227 Sum_probs=194.2
Q ss_pred EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEe
Q 042434 260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCD 339 (517)
Q Consensus 260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~ 339 (517)
++.+.+|.++|.|+.|...|.++++|+.|..++||..+++.+.....+|.+.|+.++.+.+...+++++.|.. |.+|.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v--IrvWr 260 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKV--IRVWR 260 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCce--EEEEe
Confidence 3556789999999999999999999999999999999999999999999999999999999999999999998 77788
Q ss_pred CCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCc-e-----EEeeccCCCeeEEEEcCCCCEEEEEeC
Q 042434 340 CDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTY-A-----ERVISEEHPITSLSVSVDCKNFIVNLN 413 (517)
Q Consensus 340 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~ 413 (517)
...........++.+.|++++|+|-. +.+.||++++||.+-. . ........-+.++.|-.++..+++++.
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 77655555555566799999999975 7789999999998821 1 112233455777788888889999999
Q ss_pred CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCC
Q 042434 414 SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR 493 (517)
Q Consensus 414 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~ 493 (517)
|+.-..|.+... ..+.... +-....+.-..+.+++-.+-.+++|++.+|.+.+.+.+|...+..+.++|-+
T Consensus 337 d~ea~n~e~~~l-------~~~~~~l--if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn 407 (1113)
T KOG0644|consen 337 DGEARNHEFEQL-------AWRSNLL--IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN 407 (1113)
T ss_pred CcccccchhhHh-------hhhccce--EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence 998887776321 0011000 1011111122466777778899999999999999999999999999999999
Q ss_pred CcEEEEeeCCCcEEEeCCCCCCCC
Q 042434 494 PKMLASASDDHTIRIWGPCQSSEV 517 (517)
Q Consensus 494 ~~~l~s~~~dg~v~iw~~~~~~~v 517 (517)
+.+..+++.||...|||+-.|.++
T Consensus 408 ~ri~msag~dgst~iwdi~eg~pi 431 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWDIWEGIPI 431 (1113)
T ss_pred cHhhhhccCCCceEeeecccCCcc
Confidence 888899999999999999887653
No 197
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.4e-15 Score=147.42 Aligned_cols=236 Identities=18% Similarity=0.186 Sum_probs=165.6
Q ss_pred CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC---CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC
Q 042434 244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN---AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD 320 (517)
Q Consensus 244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 320 (517)
..|.+||.+.... ..+..+...+.+.+|+|||+.|+..+. +..+.+|++.+|+..... .....+....|+||
T Consensus 179 ~~l~~~d~dg~~~----~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPD 253 (429)
T PRK03629 179 YELRVSDYDGYNQ----FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPD 253 (429)
T ss_pred eeEEEEcCCCCCC----EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCC
Confidence 3688888764332 233446778999999999999987543 357999999888654322 33334557899999
Q ss_pred CCeEEEe-eCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC-C--cEEEEECCCce-EEeeccCCC
Q 042434 321 SKRLVCG-SSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD-K--DIRILNLGTYA-ERVISEEHP 395 (517)
Q Consensus 321 ~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~-~~~~~~~~~ 395 (517)
|+.|+.. +.+|...||.||..+.....+.... ..+....|+|||+.++..+.+ + .|+++|+.++. .........
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~ 332 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQ 332 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCC
Confidence 9988865 5566666999999877666655443 357789999999988777654 3 45556777665 333334445
Q ss_pred eeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCc---EEEEecC
Q 042434 396 ITSLSVSVDCKNFIVNLNS---QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ---IYIWNRR 469 (517)
Q Consensus 396 i~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~---i~iwd~~ 469 (517)
.....|+|||++++..+.+ ..|.+||+.++. ...+..... .....|+|||++|+.++.++. ++++++
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~~~~----~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~- 405 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLTDTFL----DETPSIAPNGTMVIYSSSQGMGSVLNLVST- 405 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCC--eEEeCCCCC----CCCceECCCCCEEEEEEcCCCceEEEEEEC-
Confidence 6678999999999876653 358889987652 222222111 123446899999999888764 677777
Q ss_pred CCceeEEecCCCCCeeEEEecCC
Q 042434 470 NSKPIEILSGHSMTVNCVSWNPK 492 (517)
Q Consensus 470 ~~~~~~~~~~h~~~v~~v~~~~~ 492 (517)
+|.....+.+|.+.+...+|+|-
T Consensus 406 ~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 406 DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCCCeEECccCCCCcCCcccCCC
Confidence 56667778888899999999973
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=2.1e-16 Score=153.66 Aligned_cols=219 Identities=16% Similarity=0.207 Sum_probs=154.6
Q ss_pred CCCcccEEEeccccCcEEEEEECCCCCEEEEeeCC---CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE
Q 042434 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSD---CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC 285 (517)
Q Consensus 209 ~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~ 285 (517)
...+...+.+..|...+.+.+|||||+.|+.++.+ ..|++||+.++.. ..+..+.+| ...++|+|||+.|+.+
T Consensus 190 d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~~~g~---~~~~~wSPDG~~La~~ 265 (429)
T PRK01742 190 DYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-KVVASFRGH---NGAPAFSPDGSRLAFA 265 (429)
T ss_pred CCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-EEEecCCCc---cCceeECCCCCEEEEE
Confidence 34455567788899999999999999999987654 3699999976532 233334443 3468999999988876
Q ss_pred e-CCCeEEE--EECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434 286 G-NAEVLKL--WDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV 361 (517)
Q Consensus 286 ~-~dg~i~i--wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 361 (517)
+ .+|.+.| ||+.++.. ..+..+...+.+..|+|||+.|+.++ .++...||.++..+...... ... . ....|
T Consensus 266 ~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~-~--~~~~~ 340 (429)
T PRK01742 266 SSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR-G--YSAQI 340 (429)
T ss_pred EecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC-C--CCccC
Confidence 4 6776555 56666654 44556667788999999999877655 56787788888876555443 222 1 45789
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC-CCccceEEeCccc
Q 042434 362 TPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG-KWEKPFKYTGHSQ 437 (517)
Q Consensus 362 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~ 437 (517)
+|+|+.++.++.++ +.+||+.++.............+.|+|+|+.++.++.++...+|++.. .......+..+..
T Consensus 341 SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g 416 (429)
T PRK01742 341 SADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG 416 (429)
T ss_pred CCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC
Confidence 99999998887765 566999887633332223456788999999999999999888777632 1244555555443
No 199
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.75 E-value=2e-15 Score=141.75 Aligned_cols=302 Identities=15% Similarity=0.168 Sum_probs=187.8
Q ss_pred CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE
Q 042434 203 HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL 282 (517)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 282 (517)
....++....+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+ .+.++.. .....++++++||+++
T Consensus 17 ~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~---~v~~i~~-G~~~~~i~~s~DG~~~ 92 (369)
T PF02239_consen 17 SVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK---VVATIKV-GGNPRGIAVSPDGKYV 92 (369)
T ss_dssp EEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS---EEEEEE--SSEEEEEEE--TTTEE
T ss_pred EEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc---EEEEEec-CCCcceEEEcCCCCEE
Confidence 34456666677888887665554567899999999999999999999997765 4444443 3456889999999999
Q ss_pred EEEe-CCCeEEEEECCCCcEEEEeCCC-------CCceEEEEEeCCCCeEEEeeCC-CceeEEEEeCCCC-eeEeeeCcC
Q 042434 283 LTCG-NAEVLKLWDVETGICKHTFGDH-------GFIVSSCAWFPDSKRLVCGSSD-TEKGIFMCDCDGN-EIKAWRGTR 352 (517)
Q Consensus 283 ~s~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~~~~~d-~~v~i~~~~~~~~-~~~~~~~~~ 352 (517)
++++ .++.+.++|.++.+.++.+... ...+.++..+|....++..-.| +. +|..|.... .+.......
T Consensus 93 ~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~--I~vVdy~d~~~~~~~~i~~ 170 (369)
T PF02239_consen 93 YVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE--IWVVDYSDPKNLKVTTIKV 170 (369)
T ss_dssp EEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE--EEEEETTTSSCEEEEEEE-
T ss_pred EEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe--EEEEEeccccccceeeecc
Confidence 8775 5889999999999998877432 3567888888988867666555 55 888886542 222222222
Q ss_pred CCceEEEEEccCCCEEEEE-eCCCcEEEEECCCceEEee------ccCCCeeEEEEcCCC----------CEEEEEeCCC
Q 042434 353 IPKVLDLAVTPDGENLISV-LSDKDIRILNLGTYAERVI------SEEHPITSLSVSVDC----------KNFIVNLNSQ 415 (517)
Q Consensus 353 ~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~------~~~~~i~~~~~s~~~----------~~l~~~~~d~ 415 (517)
........|+|++++++++ ..++.|-++|..+.+.... .+..+...+ .+|.. ...++....+
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~ 249 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTD 249 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--
T ss_pred cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCC
Confidence 2367889999999987665 5567899999988773221 122222222 22322 2222222233
Q ss_pred eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe----cCCCcEEEEecCCCceeEEecCC-CCCeeEEEec
Q 042434 416 EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG----SENSQIYIWNRRNSKPIEILSGH-SMTVNCVSWN 490 (517)
Q Consensus 416 ~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~ 490 (517)
.+.+||... ++.+..+.....+ ..+.. +|+++++++. ...++|.++|.++.+.+.++... ...+..+.|+
T Consensus 250 ~v~v~d~~~-wkvv~~I~~~G~g-lFi~t---hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~ 324 (369)
T PF02239_consen 250 PVSVHDDYA-WKVVKTIPTQGGG-LFIKT---HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFN 324 (369)
T ss_dssp TTT-STTTB-TSEEEEEE-SSSS---EE-----TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-
T ss_pred ccccchhhc-CeEEEEEECCCCc-ceeec---CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEEC
Confidence 444566544 3666667665554 33333 8999999988 44589999999999888887532 2358999999
Q ss_pred CCCCcEEEEeeCCC-cEEEeCCCCCCC
Q 042434 491 PKRPKMLASASDDH-TIRIWGPCQSSE 516 (517)
Q Consensus 491 ~~~~~~l~s~~~dg-~v~iw~~~~~~~ 516 (517)
++|..+.+|.-.++ .|.|||..+.++
T Consensus 325 ~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 325 PDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred CCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 99976666666555 899999988764
No 200
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=2.4e-17 Score=152.99 Aligned_cols=203 Identities=17% Similarity=0.273 Sum_probs=154.3
Q ss_pred ccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCC----eeeEEEEeccCCCCEEEEEECC-CCCeEEEEeCCCeEEEE
Q 042434 221 HKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDS----KLTLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAEVLKLW 294 (517)
Q Consensus 221 h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iw 294 (517)
....|+.+.|.| |...||.++.||.|++|.+..+. ...+...+..|...|+++.|+| ..+.|+++++|.+|++|
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 456899999999 88899999999999999986543 2345567889999999999999 45789999999999999
Q ss_pred ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe--eEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE--IKAWRGTRIPKVLDLAVTPDGENLISVL 372 (517)
Q Consensus 295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 372 (517)
|+.+++....+.+|.+.|..++|+|+|+.+++.+.||+ +++++.+... +..-.+.....--.+.|..+|+++++.+
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~--~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT--LRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVG 783 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce--EEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEec
Confidence 99999999999999999999999999999999999999 6667766443 3333333333455678888999988887
Q ss_pred CCC----cEEEEECCCce-----EEeeccCCCeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCC
Q 042434 373 SDK----DIRILNLGTYA-----ERVISEEHPITSLSVSVDCK-NFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 373 ~dg----~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~ 425 (517)
.|. .|.+||..+.. .........+.--.+.+|.. .+++|-.|..|.+|.+-..
T Consensus 784 fdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 784 FDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred ccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 664 68888876643 11111111222223445544 4566777889999998543
No 201
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=1.1e-15 Score=152.30 Aligned_cols=257 Identities=14% Similarity=0.180 Sum_probs=180.7
Q ss_pred eEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCC-------CcEEEEeCCCCCceEEEEEeCCCCeEEEeeC
Q 042434 258 TLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVET-------GICKHTFGDHGFIVSSCAWFPDSKRLVCGSS 329 (517)
Q Consensus 258 ~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~ 329 (517)
..+..+..|...|..++.++.. .++++||.||+|++||... .+...++......+.++...+.++.+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4667788899999999988765 9999999999999999853 1233455556788999999999999999999
Q ss_pred CCceeEEEEeCC-C-----CeeEeeeCcCCCceEEE-EEcc-CCC-EEEEEeCCCcEEEEECCCce----EEeeccCCCe
Q 042434 330 DTEKGIFMCDCD-G-----NEIKAWRGTRIPKVLDL-AVTP-DGE-NLISVLSDKDIRILNLGTYA----ERVISEEHPI 396 (517)
Q Consensus 330 d~~v~i~~~~~~-~-----~~~~~~~~~~~~~i~~~-~~~~-~~~-~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i 396 (517)
||.+.+...|.. . .+.+.......+.+.++ ++.. .+. .++.+...+.|..||++... .......+.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 999766666652 1 11122222333444444 3322 233 78888899999999998866 3344556789
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC--CCcEEEEecCCCcee
Q 042434 397 TSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE--NSQIYIWNRRNSKPI 474 (517)
Q Consensus 397 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~ 474 (517)
++++.+|.+.+++.|+..|.+.+||++-+......-.++......+.++...+.....++++. .+.|.+|++.+|.+-
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 999999999999999999999999998762222222233344455666666666666666554 678999999998665
Q ss_pred EEecCC-------------------CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 475 EILSGH-------------------SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 475 ~~~~~h-------------------~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
.++... .-......+...+ .++.+|+.|..||.||...++
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~-~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN-GFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC-ceeeecCCccceeeccCCCcc
Confidence 555321 0111122232223 589999999999999998754
No 202
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=5.5e-17 Score=148.85 Aligned_cols=237 Identities=19% Similarity=0.282 Sum_probs=166.9
Q ss_pred cccCCCCCc-cccccCCCcccccCC---------CcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC-
Q 042434 187 SCQYHNSSV-AISLYEDHCCGRDQI---------PTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS- 255 (517)
Q Consensus 187 ~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~- 255 (517)
...+|+... .+....++....|.+ ..+++.++.+|.++|.|+++++++..+.+|+.||+|+.|++....
T Consensus 299 ~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 299 ALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQD 378 (577)
T ss_pred hhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCC
Confidence 334555443 555666666554443 236788999999999999999999999999999999999764211
Q ss_pred ------eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCC--CCceEEEEEeCCC-CeEEE
Q 042434 256 ------KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH--GFIVSSCAWFPDS-KRLVC 326 (517)
Q Consensus 256 ------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~-~~l~~ 326 (517)
.......+.||++.|+.+++|+....|++++.||+++.|+...... .+|... .+...++.+-... ...++
T Consensus 379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~ 457 (577)
T KOG0642|consen 379 PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLA 457 (577)
T ss_pred cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhh
Confidence 1234567889999999999999999999999999999999866655 444322 2233445443322 11122
Q ss_pred eeCCCceeEEEEeCCCCeeEeeeC------cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeE
Q 042434 327 GSSDTEKGIFMCDCDGNEIKAWRG------TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITS 398 (517)
Q Consensus 327 ~~~d~~v~i~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~ 398 (517)
...-+.-.++.... ...+..+.. .....+.-+.++|.+...+++..|+.|+++|..++. .....+...+++
T Consensus 458 s~~~~~~~~~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svts 536 (577)
T KOG0642|consen 458 SFRFGYTSIDDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTS 536 (577)
T ss_pred hcccccccchhhhh-hhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecc
Confidence 11112100111111 111111111 112356778899999999999999999999999988 556678889999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 399 LSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 399 ~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
+++.|+|-++++++.|+.+.+|.+...
T Consensus 537 lai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 537 LAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred eeecCCCceEEeecCCceeehhhccch
Confidence 999999999999999999999998654
No 203
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.7e-15 Score=124.67 Aligned_cols=233 Identities=11% Similarity=0.154 Sum_probs=171.6
Q ss_pred CEEEEEECCCCCeEEEEeCCCeEEEEECCC----------CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEE
Q 042434 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVET----------GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMC 338 (517)
Q Consensus 269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~ 338 (517)
.|.+-+|+|.+++|++|..+|+|.+..+.+ ...+..+++|+++|..++|. ..+|++|+. |.|+-|.|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 456668999999999999999999998753 23455667999999999998 345666554 99888888
Q ss_pred eCCCCe--eE-ee--------eCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCC
Q 042434 339 DCDGNE--IK-AW--------RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDC 405 (517)
Q Consensus 339 ~~~~~~--~~-~~--------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~ 405 (517)
+...+. .+ .+ .....+.|+++...|..+.++.++.|+.++-||+++++ ....+|..-+.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 754221 11 11 11223578999999998888888899999999999998 5667788889999886667
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccceEEeCcccC-------ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec
Q 042434 406 KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN-------KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS 478 (517)
Q Consensus 406 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 478 (517)
..+++|+.||++++||.++. +.+..+...... ..-|.++ ..+..++++|+. -.+.+|++++.++..+++
T Consensus 169 ~qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGgG-p~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGGG-PKLSLWHLRSSESTCVFP 244 (325)
T ss_pred cceeecCCCccEEEEecccc-ceeEEeccccChhhcCcccCceeEEE--eccCceEEecCC-CceeEEeccCCCceEEEe
Confidence 78999999999999999887 444433322111 1122333 346668888764 469999999999888876
Q ss_pred CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 479 GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 479 ~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
-.+.+..+.|..+ .++++|..+.|.-|.+.
T Consensus 245 -ipa~v~~v~F~~d---~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 245 -IPARVHLVDFVDD---CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred -cccceeEeeeecc---eEEEeccccceeeeeec
Confidence 4577888888755 47777777777777654
No 204
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.1e-15 Score=129.44 Aligned_cols=266 Identities=18% Similarity=0.169 Sum_probs=168.6
Q ss_pred cccccCCCcccccCCCcccEEEec-cccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeee-----------EEEE
Q 042434 196 AISLYEDHCCGRDQIPTETVQILT-EHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLT-----------LKHT 262 (517)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~-----------~~~~ 262 (517)
++...+|....++... .+...++ .....|+|++|-| .++-|+.|+.. -|.+|......... .+..
T Consensus 114 ava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~ 191 (445)
T KOG2139|consen 114 AVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQ 191 (445)
T ss_pred hhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhhee
Confidence 4555556665555555 3444444 3567899999999 45678888875 48999874321111 1112
Q ss_pred eccCCCCEEEEEECCCCCeEEEEeC-CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC
Q 042434 263 LRSHQNPVSFVAWSPDDTKLLTCGN-AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341 (517)
Q Consensus 263 ~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~ 341 (517)
..+| .+|+++.|.+||..+++++. |..|.|||..++.++.......+.++-+.|+||+.+|++++.|+. ..+|...
T Consensus 192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav--frlw~e~ 268 (445)
T KOG2139|consen 192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV--FRLWQEN 268 (445)
T ss_pred CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce--eeeehhc
Confidence 2344 78999999999999999887 568999999999887666556677889999999999999999998 6677443
Q ss_pred -CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECC--Cce----------EE--------------eeccCC
Q 042434 342 -GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLG--TYA----------ER--------------VISEEH 394 (517)
Q Consensus 342 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~----------~~--------------~~~~~~ 394 (517)
......+.... +.|...+|+|+|++++..... .-++|.+. ... .. .....+
T Consensus 269 q~wt~erw~lgs-grvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cg 346 (445)
T KOG2139|consen 269 QSWTKERWILGS-GRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCG 346 (445)
T ss_pred ccceecceeccC-CceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccC
Confidence 33333344333 389999999999976654332 22333321 110 00 001245
Q ss_pred CeeEEEEcCCCCEEEEEeCCCe--------EEEEEcCCCCccceEEeCcccCce--EEEeecCCCCCcEEEEecCCCcEE
Q 042434 395 PITSLSVSVDCKNFIVNLNSQE--------IHMWDVAGKWEKPFKYTGHSQNKY--VIRSCFGGLDGTFIASGSENSQIY 464 (517)
Q Consensus 395 ~i~~~~~s~~~~~l~~~~~d~~--------i~~~d~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~ 464 (517)
++.+++|.|.|.++++....+. |.+||.+........+-+...+.+ .|..-....+|.+|..+-..|.+.
T Consensus 347 eaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq 426 (445)
T KOG2139|consen 347 EAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQ 426 (445)
T ss_pred ccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceE
Confidence 7899999999999999877553 667776553222222223222211 122222223556666666666665
Q ss_pred EEec
Q 042434 465 IWNR 468 (517)
Q Consensus 465 iwd~ 468 (517)
-|++
T Consensus 427 ~ypl 430 (445)
T KOG2139|consen 427 RYPL 430 (445)
T ss_pred eeee
Confidence 5554
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.73 E-value=9.8e-17 Score=146.14 Aligned_cols=252 Identities=20% Similarity=0.286 Sum_probs=176.0
Q ss_pred CCCCCccccccCCC-cccccCCCcccEEEeccccCcEEEEEE-CC-------CCCEEEEeeCCCcEEEEEecCCCeeeEE
Q 042434 190 YHNSSVAISLYEDH-CCGRDQIPTETVQILTEHKNEVWFVQF-SN-------NGEYLASSSSDCSAIIWKVLEDSKLTLK 260 (517)
Q Consensus 190 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~h~~~v~~~~~-s~-------~~~~l~t~~~dg~i~iw~~~~~~~~~~~ 260 (517)
.......+...+|+ ...++.........+.-..+.|....+ -+ ....++.++.||.+.|.+-. .+..
T Consensus 22 w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k~----~rVE 97 (737)
T KOG1524|consen 22 WSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNKS----ARVE 97 (737)
T ss_pred ccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEeccc----chhh
Confidence 33333334444444 445655555544444433333332222 01 12478888899999988642 2445
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC
Q 042434 261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC 340 (517)
Q Consensus 261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~ 340 (517)
+....|.+.|.+-.|+|||.-|++++.||.|++|. ++|-...++.....+|.|++|.|+.+.++.+..+. +++-.+
T Consensus 98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h---~~IKpL 173 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGH---ISIKPL 173 (737)
T ss_pred hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCe---EEEeec
Confidence 67788999999999999999999999999999998 46666556667788999999999988777665543 333333
Q ss_pred C-CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434 341 D-GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIH 418 (517)
Q Consensus 341 ~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 418 (517)
. ...+..|..|. +-|.++.|++..+.+++|+.|-..++||..... .....+..+|++++|.|+ +.+++++.+ +++
T Consensus 174 ~~n~k~i~WkAHD-GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R 250 (737)
T KOG1524|consen 174 AANSKIIRWRAHD-GLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR 250 (737)
T ss_pred ccccceeEEeccC-cEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeee-eee
Confidence 3 23445566554 689999999999999999999999999987665 556678899999999999 666655532 222
Q ss_pred EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434 419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN 467 (517)
Q Consensus 419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 467 (517)
+. ......+-.+.||+||..+++|+..|.+.+-.
T Consensus 251 -------------~~--~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 251 -------------FS--SPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred -------------ec--CCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 11 11222355667799999999999999876543
No 206
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=6.2e-15 Score=143.17 Aligned_cols=236 Identities=21% Similarity=0.200 Sum_probs=161.2
Q ss_pred CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---CeEEEEECCCCcEEEEeCCCCCceEEEEEeCC
Q 042434 244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---EVLKLWDVETGICKHTFGDHGFIVSSCAWFPD 320 (517)
Q Consensus 244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 320 (517)
..|.++|.... . ...+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... ......+.+.+|+||
T Consensus 176 ~~L~~~D~dG~-~---~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDADGQ-N---AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCCCC-C---ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCC
Confidence 35666665322 1 13345677889999999999999887643 3699999998876543 334455678999999
Q ss_pred CCeEEE-eeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CCcEEEE--ECCCce-EEeeccCCC
Q 042434 321 SKRLVC-GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DKDIRIL--NLGTYA-ERVISEEHP 395 (517)
Q Consensus 321 ~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~--d~~~~~-~~~~~~~~~ 395 (517)
|+.++. .+.+|...+|.++..+.....+..+. .......|+|||+.++..+. +|...+| ++.++. .........
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~ 329 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSS-GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY 329 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCcEECCCCC-CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC
Confidence 998874 67788888999998876666554432 34567889999998876654 4555555 444444 222223334
Q ss_pred eeEEEEcCCCCEEEEEeCCC---eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC---cEEEEecC
Q 042434 396 ITSLSVSVDCKNFIVNLNSQ---EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS---QIYIWNRR 469 (517)
Q Consensus 396 i~~~~~s~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~~ 469 (517)
.....|+|+|++++..+.++ .|.+||+.++.. ..+.... . .....|+|||+.|+.++.++ .+++.++
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~--~~lt~~~-~---~~~p~~spdg~~l~~~~~~~g~~~l~~~~~- 402 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV--TALTDTT-R---DESPSFAPNGRYILYATQQGGRSVLAAVSS- 402 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe--EEccCCC-C---ccCceECCCCCEEEEEEecCCCEEEEEEEC-
Confidence 45688999999998877654 699999976522 2222211 1 13445699999988877554 4666676
Q ss_pred CCceeEEecCCCCCeeEEEecCC
Q 042434 470 NSKPIEILSGHSMTVNCVSWNPK 492 (517)
Q Consensus 470 ~~~~~~~~~~h~~~v~~v~~~~~ 492 (517)
+|+....+..+.+.+...+|+|-
T Consensus 403 ~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 403 DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCceEEeecCCCCCCCCccCCC
Confidence 46667777777788889999874
No 207
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5.3e-15 Score=136.19 Aligned_cols=280 Identities=14% Similarity=0.177 Sum_probs=186.5
Q ss_pred cccCcEEEEEECCCCCEE-EEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 042434 220 EHKNEVWFVQFSNNGEYL-ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET 298 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 298 (517)
+|...-+.+..+|||+|+ |||..--.|++||+..- .+...-.-....|.-.-.+.|-..++.-..|.+|-+... .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL---SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL---SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-Y 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccc---eeeeeecccccceeEEEeccchhhheEeecCceeeehhh-c
Confidence 367777889999999986 56667889999999532 222211112345665666666666777777887776543 2
Q ss_pred CcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcE
Q 042434 299 GICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDI 377 (517)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 377 (517)
|... .+. -...-..++++. ...+++.|+. .. ||.+++.............+.+.++.+++-..+|++|+.+|.|
T Consensus 125 G~hy-~~R-IP~~GRDm~y~~~scDly~~gsg-~e--vYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 125 GRHY-RTR-IPKFGRDMKYHKPSCDLYLVGSG-SE--VYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred Ceee-eee-cCcCCccccccCCCccEEEeecC-cc--eEEEEccccccccccccccccceeeeecCccceEEecccCceE
Confidence 2211 111 111223455543 3334444443 33 9999988554433333334689999999999999999999999
Q ss_pred EEEECCCce-EEee-------cc-----CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEe
Q 042434 378 RILNLGTYA-ERVI-------SE-----EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS 444 (517)
Q Consensus 378 ~i~d~~~~~-~~~~-------~~-----~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~ 444 (517)
..||.+... .... .+ ...|+++.|+.+|-.+++|+.+|.+.+||++.. .+.....|.........
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~--~pl~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS--KPLLVKDHGYELPIKKL 277 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC--CceeecccCCccceeee
Confidence 999998765 1111 11 124999999999999999999999999999985 33334444443333333
Q ss_pred ecCCCC-CcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 445 CFGGLD-GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 445 ~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
.+...+ ++.+++ .....++|||-.+|++...+.. ...++.+|+-|++ .+++++-.++.+..|=+..
T Consensus 278 ~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~s-Gm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 278 DWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGS-GMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cccccCCCceEEe-cchHHhhhcccccCCceeeccc-cCCcCceeeecCC-ceEEEecCCCcceeEEccc
Confidence 222223 344444 4457899999999999988874 5569999999998 6899998888777665443
No 208
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=8.4e-16 Score=140.15 Aligned_cols=201 Identities=15% Similarity=0.223 Sum_probs=157.6
Q ss_pred cCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC
Q 042434 200 YEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD 279 (517)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 279 (517)
+.|+...+-.-..+..+.+..|.+.|.|-.|+|||.-|++++.||.|++|.-. + ....++.....+|.|++|.|+.
T Consensus 82 s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-G---MLRStl~Q~~~~v~c~~W~p~S 157 (737)
T KOG1524|consen 82 SNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-G---MLRSTVVQNEESIRCARWAPNS 157 (737)
T ss_pred cCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-c---hHHHHHhhcCceeEEEEECCCC
Confidence 33444444555567778889999999999999999999999999999999853 2 2334455567899999999998
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEE
Q 042434 280 TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDL 359 (517)
Q Consensus 280 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~ 359 (517)
+.++.+. .+.+.|=.+.-...+-..+.|++-|.++.|++..+.+++|+.|-. ..+||..|..+..-..+. -+|+++
T Consensus 158 ~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k--fKvWD~~G~~Lf~S~~~e-y~ITSv 233 (737)
T KOG1524|consen 158 NSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR--FKIWDAQGANLFTSAAEE-YAITSV 233 (737)
T ss_pred CceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee--EEeecccCcccccCChhc-cceeee
Confidence 8777654 346777677666667788899999999999999999999999987 899999988776655554 489999
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 042434 360 AVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHM 419 (517)
Q Consensus 360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~ 419 (517)
+|+|+ +.++.++. ++++ ......+.|..++||+||..+++|+..|.+.+
T Consensus 234 a~npd-~~~~v~S~-nt~R---------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 234 AFNPE-KDYLLWSY-NTAR---------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeccc-cceeeeee-eeee---------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 99999 55555543 2333 12234567999999999999999999987654
No 209
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.3e-14 Score=141.69 Aligned_cols=235 Identities=14% Similarity=0.123 Sum_probs=164.2
Q ss_pred CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC---CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC
Q 042434 244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN---AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD 320 (517)
Q Consensus 244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 320 (517)
..|.+||..... ...+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+...+.+.+|+||
T Consensus 182 ~~l~~~d~dg~~----~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDGAN----VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCCCC----cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC
Confidence 367788874332 2345568889999999999999988764 468999999888754 34455667788999999
Q ss_pred CCeEE-EeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CC--cEEEEECCCce-EEeeccCCC
Q 042434 321 SKRLV-CGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DK--DIRILNLGTYA-ERVISEEHP 395 (517)
Q Consensus 321 ~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~-~~~~~~~~~ 395 (517)
|+.|+ +.+.++...||.++..+.....+.... .......|+|||+.++..+. +| .|+++|+.++. .........
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~-~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~ 335 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSP-AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR 335 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceEEccCCC-CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc
Confidence 99875 556677777999999887776655433 34667899999998887764 33 68888987765 333333455
Q ss_pred eeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC------CcEEEE
Q 042434 396 ITSLSVSVDCKNFIVNLNS---QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN------SQIYIW 466 (517)
Q Consensus 396 i~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~iw 466 (517)
+....|+|+|+.++....+ ..|.+||+.+... ..+.. .. ......|+|||+.|+..+.+ ..++++
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt~-~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILTS-GF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--EeccC-CC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 6778999999999887653 3688888765422 22221 11 13345569999988775543 258888
Q ss_pred ecCCCceeEEecCCCCCeeEEEecCC
Q 042434 467 NRRNSKPIEILSGHSMTVNCVSWNPK 492 (517)
Q Consensus 467 d~~~~~~~~~~~~h~~~v~~v~~~~~ 492 (517)
|+..+.. ..+. ..+.+...+|+|-
T Consensus 410 dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 410 DLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ECCCCce-EEcc-CCCCccCcccCCC
Confidence 8876554 4554 3455778888874
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1e-14 Score=141.41 Aligned_cols=218 Identities=17% Similarity=0.218 Sum_probs=152.3
Q ss_pred CcccEEEeccccCcEEEEEECCCCCEEEEee---CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE-e
Q 042434 211 PTETVQILTEHKNEVWFVQFSNNGEYLASSS---SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC-G 286 (517)
Q Consensus 211 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~---~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~ 286 (517)
.+...+.+..+...+.+.+|||||+.|+..+ .+..+.+|++.++.. ..+..+ .+.+...+|+|||+.|+.. +
T Consensus 187 dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~---~~~~~~~~~SPDG~~La~~~~ 262 (429)
T PRK03629 187 DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASF---PRHNGAPAFSPDGSKLAFALS 262 (429)
T ss_pred CCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEccCC---CCCcCCeEECCCCCEEEEEEc
Confidence 3444455666778999999999999998754 245789999876532 222233 3345568999999988865 4
Q ss_pred CCC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc
Q 042434 287 NAE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP 363 (517)
Q Consensus 287 ~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 363 (517)
.+| .|.+||+.+++.... ..+...+....|+|||+.|+..+. ++...+|.++..+.....+.... .......|+|
T Consensus 263 ~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~-~~~~~~~~Sp 340 (429)
T PRK03629 263 KTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEG-SQNQDADVSS 340 (429)
T ss_pred CCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCC-CCccCEEECC
Confidence 454 589999988876544 344556788999999998877765 45667999998876555543322 2456789999
Q ss_pred CCCEEEEEeCC---CcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCe---EEEEEcCCCCccceEEeCcc
Q 042434 364 DGENLISVLSD---KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQE---IHMWDVAGKWEKPFKYTGHS 436 (517)
Q Consensus 364 ~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~---i~~~d~~~~~~~~~~~~~~~ 436 (517)
||+.++..+.+ ..|.+||+.++...............|+|||+.++.++.++. +.++++.+. ....+.++.
T Consensus 341 DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~--~~~~l~~~~ 417 (429)
T PRK03629 341 DGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATD 417 (429)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC--CeEECccCC
Confidence 99998876654 358889998877444433334557889999999999887764 667777543 334444443
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=4.1e-15 Score=132.27 Aligned_cols=197 Identities=20% Similarity=0.244 Sum_probs=141.9
Q ss_pred EEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce----EE
Q 042434 313 SSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA----ER 388 (517)
Q Consensus 313 ~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~ 388 (517)
.+++|+++|..+++++.||.++||.|-. ...+.....++ ..|.++.|+|||+.+++.+.| ..+||+.+++. ..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~~~-~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIAHH-AEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHhhc-CccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 6799999999999999999955554432 23333333333 589999999999999999999 89999999885 11
Q ss_pred eeccCCCeeEEEEcCCC---CEE--EEEeCCCeEEEEEcCCCCc-cceEEeCcccCceEEEeecCCCCCcEEEEecCCCc
Q 042434 389 VISEEHPITSLSVSVDC---KNF--IVNLNSQEIHMWDVAGKWE-KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ 462 (517)
Q Consensus 389 ~~~~~~~i~~~~~s~~~---~~l--~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 462 (517)
..........+.|+.++ .++ +.....+.|..||+..... ..............+.++..+++|++++.|+.||.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 13334456677787776 332 2333456677777643211 11111111112224777788999999999999999
Q ss_pred EEEEecCCCceeEEec-CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 463 IYIWNRRNSKPIEILS-GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 463 i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
|-|++..+-+.+...+ .|...|+.+.|+|+. +.+++.+.|....+..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEee
Confidence 9999999888777664 699999999999998 7899999998888876654
No 212
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=7.1e-15 Score=143.31 Aligned_cols=235 Identities=17% Similarity=0.163 Sum_probs=163.2
Q ss_pred CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---CeEEEEECCCCcEEEEeCCCCCceEEEEEeCC
Q 042434 244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---EVLKLWDVETGICKHTFGDHGFIVSSCAWFPD 320 (517)
Q Consensus 244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 320 (517)
..|.+||...... ..+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++.... ........+..|+||
T Consensus 184 ~~l~i~D~~g~~~----~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGYNP----QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCCCc----eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCC
Confidence 3588888753321 3455677889999999999999987643 4799999988876433 334445567899999
Q ss_pred CCeEE-EeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CCc--EEEEECCCceE-EeeccCCC
Q 042434 321 SKRLV-CGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DKD--IRILNLGTYAE-RVISEEHP 395 (517)
Q Consensus 321 ~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~-~~~~~~~~ 395 (517)
|+.++ +.+.+|...|+.|+..+.....+.... ......+|+|||+.++.++. +|. |+++|+.++.. ........
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~-~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~ 337 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHF-GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNY 337 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCC
Confidence 99776 456677667999999877766655433 24567899999998887764 444 77778776652 23333344
Q ss_pred eeEEEEcCCCCEEEEEeCCC---eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC---CcEEEEecC
Q 042434 396 ITSLSVSVDCKNFIVNLNSQ---EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN---SQIYIWNRR 469 (517)
Q Consensus 396 i~~~~~s~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~ 469 (517)
....+|+|+|++++..+.++ .|.+||+.++... .+... .. .....|+|||++++..+.+ +.|+++++.
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt~~-~~---~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLTPG-SL---DESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECCCC-CC---CCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 55789999999998876543 6999998765222 22211 11 1233569999988877653 468888885
Q ss_pred CCceeEEecCCCCCeeEEEecC
Q 042434 470 NSKPIEILSGHSMTVNCVSWNP 491 (517)
Q Consensus 470 ~~~~~~~~~~h~~~v~~v~~~~ 491 (517)
+.....+..+.+.+...+|+|
T Consensus 412 -g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 -GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCceEEcccCCCCCCCCccCC
Confidence 555666766677888889987
No 213
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=2.1e-14 Score=125.51 Aligned_cols=235 Identities=14% Similarity=0.190 Sum_probs=166.3
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE
Q 042434 267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK 346 (517)
Q Consensus 267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~ 346 (517)
...+..+.|..+...|..|+.|| .++|+.+..............|..+-|+ ..+++..+.+..-++.+++...+...
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 34567777999998899998887 5777766544322222334455556665 44666666554444556665543332
Q ss_pred -eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEee----ccCCCeeEEEEcCCCCEEEEEe--CCCeEE
Q 042434 347 -AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVI----SEEHPITSLSVSVDCKNFIVNL--NSQEIH 418 (517)
Q Consensus 347 -~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~----~~~~~i~~~~~s~~~~~l~~~~--~d~~i~ 418 (517)
...-.+ .|.++.++.+ .++++-.+. |+|||+++.+ ...+ .+...+.++++++.+.+++.-+ ..|.|.
T Consensus 82 Ce~~fpt--~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 82 CEIFFPT--SILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEEecCC--ceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 222222 5777777643 566655544 9999999987 2221 2333455666666667887654 478999
Q ss_pred EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCc-EEEEecCCCceeEEecCC--CCCeeEEEecCCCCc
Q 042434 419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ-IYIWNRRNSKPIEILSGH--SMTVNCVSWNPKRPK 495 (517)
Q Consensus 419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~h--~~~v~~v~~~~~~~~ 495 (517)
+||+.+. ..+..+..|... +.+++++++|.+||++++.|+ |||+.+.+|+.+..|.-- ...|.+++|+|++ .
T Consensus 157 l~d~~nl-~~v~~I~aH~~~---lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds-~ 231 (391)
T KOG2110|consen 157 LFDTINL-QPVNTINAHKGP---LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS-Q 231 (391)
T ss_pred EEEcccc-eeeeEEEecCCc---eeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC-C
Confidence 9999877 777788888876 777888999999999999996 799999999999998743 3468899999999 7
Q ss_pred EEEEeeCCCcEEEeCCCCC
Q 042434 496 MLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 496 ~l~s~~~dg~v~iw~~~~~ 514 (517)
+|++.|..++|+||.+...
T Consensus 232 ~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 232 FLAASSNTETVHIFKLEKV 250 (391)
T ss_pred eEEEecCCCeEEEEEeccc
Confidence 9999999999999998753
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=7e-17 Score=144.66 Aligned_cols=230 Identities=14% Similarity=0.201 Sum_probs=192.5
Q ss_pred CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe
Q 042434 268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA 347 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~ 347 (517)
..-..+.++.+|+.++.|+..|.|..+|..+++....+ .-...|.++.|..+..+||++-..- +++||-.|..+..
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei-~v~Etv~Dv~~LHneq~~AVAQK~y---~yvYD~~GtElHC 205 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI-NVMETVRDVTFLHNEQFFAVAQKKY---VYVYDNNGTELHC 205 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeee-ehhhhhhhhhhhcchHHHHhhhhce---EEEecCCCcEEee
Confidence 34567899999999999999999999999999988777 4456788999998888888775544 9999999988888
Q ss_pred eeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 348 WRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 348 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
+..+. .|..+.|.|..-+|++++..|.++.-|+.+++ .......+.+..++-+|-+..+-+|...|+|.+|.....
T Consensus 206 lk~~~--~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 206 LKRHI--RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred hhhcC--chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 77665 79999999999999999999999999999988 444556678888999999999999999999999998776
Q ss_pred CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCc
Q 042434 426 WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHT 505 (517)
Q Consensus 426 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~ 505 (517)
.+...+..|..+ ++++++.++|+|++|.+.|..++|||+++...+.++.. ..+...+++|..| ++++|....
T Consensus 284 -ePLvKiLcH~g~---V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg---lLA~~~G~~ 355 (545)
T KOG1272|consen 284 -EPLVKILCHRGP---VSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG---LLALSYGDH 355 (545)
T ss_pred -chHHHHHhcCCC---cceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc---ceeeecCCe
Confidence 666666677776 55666699999999999999999999999887777664 4567889999877 444555667
Q ss_pred EEEeCC
Q 042434 506 IRIWGP 511 (517)
Q Consensus 506 v~iw~~ 511 (517)
|.||.=
T Consensus 356 v~iw~d 361 (545)
T KOG1272|consen 356 VQIWKD 361 (545)
T ss_pred eeeehh
Confidence 999963
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.4e-14 Score=141.42 Aligned_cols=210 Identities=14% Similarity=0.190 Sum_probs=154.9
Q ss_pred CCcccEEEeccccCcEEEEEECCCCCEEEEeeC---CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EE
Q 042434 210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSS---DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TC 285 (517)
Q Consensus 210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~ 285 (517)
..+...+.+..|...+.+.+|||||+.|+..+. +..|.+||+.++.. ..+..+.+.+.+.+|+|||+.|+ +.
T Consensus 189 ~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~----~~l~~~~g~~~~~~~SPDG~~la~~~ 264 (435)
T PRK05137 189 QDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR----ELVGNFPGMTFAPRFSPDGRKVVMSL 264 (435)
T ss_pred CCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----EEeecCCCcccCcEECCCCCEEEEEE
Confidence 455666778889999999999999999988763 46899999976533 23445666788899999998876 44
Q ss_pred eCCC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEc
Q 042434 286 GNAE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVT 362 (517)
Q Consensus 286 ~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 362 (517)
+.++ .|.+||+.++... .+..+........|+|||+.++..+ .+|...+|.++..+.....+.... ..+....|+
T Consensus 265 ~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~S 342 (435)
T PRK05137 265 SQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG-GRYSTPVWS 342 (435)
T ss_pred ecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC-CcccCeEEC
Confidence 5555 4777898887654 4555666677899999999888776 456566999998877666554432 346678899
Q ss_pred cCCCEEEEEeCC---CcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCC------CeEEEEEcCCC
Q 042434 363 PDGENLISVLSD---KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS------QEIHMWDVAGK 425 (517)
Q Consensus 363 ~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------~~i~~~d~~~~ 425 (517)
|+|+.++....+ ..|.+||+.+...........+....|+|||+.++..+.+ ..++++|+.+.
T Consensus 343 pdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 343 PRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 999999877653 3688899866554444444467789999999998876543 25777787654
No 216
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=1.3e-14 Score=126.79 Aligned_cols=249 Identities=15% Similarity=0.118 Sum_probs=159.3
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE--eCCCeEEEEECCCC
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC--GNAEVLKLWDVETG 299 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~--~~dg~i~iwd~~~~ 299 (517)
..+|.++.++.+ .|+++-.+ .|+|||+.+-.-+..+.+...+...+.++++++.+.++|.= ...|.|.+||+.+-
T Consensus 87 pt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 87 PTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred CCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 456777777554 56665554 59999996543333333334566668788888788888853 34689999999999
Q ss_pred cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcC-CCceEEEEEccCCCEEEEEeCCCcE
Q 042434 300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTR-IPKVLDLAVTPDGENLISVLSDKDI 377 (517)
Q Consensus 300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i 377 (517)
+.+..+..|++.+.+++|+++|.+||+++..|+| |.++... +..+..++.+. ...|.+++|+|++.+|.+.+..++|
T Consensus 164 ~~v~~I~aH~~~lAalafs~~G~llATASeKGTV-IRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTV 242 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFSPDGTLLATASEKGTV-IRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETV 242 (391)
T ss_pred eeeeEEEecCCceeEEEECCCCCEEEEeccCceE-EEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeE
Confidence 9999999999999999999999999999999997 7777765 56667766544 3468899999999999999999999
Q ss_pred EEEECCCceEEeeccCCCeeEEEE-cCCCCEEEEEeC-CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEE
Q 042434 378 RILNLGTYAERVISEEHPITSLSV-SVDCKNFIVNLN-SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA 455 (517)
Q Consensus 378 ~i~d~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 455 (517)
++|.+......... .+-....| .+-.+.+ ++.. .+.-.+||.... .........+...+....-.+....+.
T Consensus 243 HiFKL~~~~~~~~~--~p~~~~~~~~~~sk~~-~sylps~V~~~~~~~R~---FAt~~l~~s~~~~~~~l~~~~~~~~v~ 316 (391)
T KOG2110|consen 243 HIFKLEKVSNNPPE--SPTAGTSWFGKVSKAA-TSYLPSQVSSVLDQSRK---FATAKLPESGRKNICSLSSIQKIPRVL 316 (391)
T ss_pred EEEEecccccCCCC--CCCCCCcccchhhhhh-hhhcchhhhhhhhhccc---eeEEEccCCCccceEEeeccCCCCEEE
Confidence 99998765411111 00000000 0000000 0000 111122443221 111111111111233333235778899
Q ss_pred EecCCCcEEEEecC--CCceeEEecCC
Q 042434 456 SGSENSQIYIWNRR--NSKPIEILSGH 480 (517)
Q Consensus 456 ~~~~dg~i~iwd~~--~~~~~~~~~~h 480 (517)
.++.||.++.|.+. +|.....++.|
T Consensus 317 vas~dG~~y~y~l~~~~gGec~lik~h 343 (391)
T KOG2110|consen 317 VASYDGHLYSYRLPPKEGGECALIKRH 343 (391)
T ss_pred EEEcCCeEEEEEcCCCCCceeEEEEee
Confidence 99999999999764 34444455444
No 217
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.6e-14 Score=140.88 Aligned_cols=210 Identities=16% Similarity=0.180 Sum_probs=150.9
Q ss_pred CCcccEEEeccccCcEEEEEECCCCCEEEEeeC---CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EE
Q 042434 210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSS---DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TC 285 (517)
Q Consensus 210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~ 285 (517)
..+...+.+..|...+.+.+|+|||+.|+.++. +..|.+|++.++.. . .+..+.+...+.+|+|||+.|+ +.
T Consensus 191 ~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~---~l~~~~g~~~~~~~SpDG~~l~~~~ 266 (433)
T PRK04922 191 SDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-E---LVASFRGINGAPSFSPDGRRLALTL 266 (433)
T ss_pred CCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-E---EeccCCCCccCceECCCCCEEEEEE
Confidence 345556677778889999999999999998764 34699999976543 2 2233444556789999998776 44
Q ss_pred eCCC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEc
Q 042434 286 GNAE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVT 362 (517)
Q Consensus 286 ~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 362 (517)
+.+| .|.+||+.+++.. .+..+.......+|+|||+.++.++. +|...+|.++..+.....+.... ......+|+
T Consensus 267 s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g-~~~~~~~~S 344 (433)
T PRK04922 267 SRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG-NYNARASVS 344 (433)
T ss_pred eCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC-CCccCEEEC
Confidence 5555 6999999888754 44455555677899999998887764 55667999998765554443222 234568999
Q ss_pred cCCCEEEEEeCCC---cEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCC---CeEEEEEcCCC
Q 042434 363 PDGENLISVLSDK---DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS---QEIHMWDVAGK 425 (517)
Q Consensus 363 ~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~ 425 (517)
|+|+.++..+.++ .|.+||+.++......+........|+|||+.++..+.+ +.+.++++.+.
T Consensus 345 pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 345 PDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 9999988765443 699999988775444444455678999999998877653 35777777543
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.68 E-value=5.4e-15 Score=135.10 Aligned_cols=271 Identities=15% Similarity=0.185 Sum_probs=174.2
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCe--eeEEEEeccCCCCEEEEEE-----CCCCCeEEEEeCCCeEEEEEC
Q 042434 224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSK--LTLKHTLRSHQNPVSFVAW-----SPDDTKLLTCGNAEVLKLWDV 296 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~h~~~v~~l~~-----s~~~~~l~s~~~dg~i~iwd~ 296 (517)
.+....++-.|++|+..-. ..+.+|+...+.. ....+.+... ...+|-+| .|++--++.|-.-|.+.+.|.
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~g-t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKG-TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccC-CCCceecccccccCCCCcceEEeeccCceEEecc
Confidence 4445555567777776533 4688898863221 1111111111 22334444 346667888888899999887
Q ss_pred CCCcEEEEeC----CCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434 297 ETGICKHTFG----DHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV 371 (517)
Q Consensus 297 ~~~~~~~~~~----~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 371 (517)
...+..+.+. ..+..|+|+.|-|.+ ..++++-.+|. ++.+|..-. ... .-.+....+++..+...
T Consensus 203 ~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGn--lyly~~~~~------~~~--t~p~~~~~k~~~~f~i~ 272 (636)
T KOG2394|consen 203 INFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGN--LYLYDKEIV------CGA--TAPSYQALKDGDQFAIL 272 (636)
T ss_pred hhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCc--eEEeecccc------ccC--CCCcccccCCCCeeEEe
Confidence 6533222221 235789999999954 46666777888 887775210 000 01112223344444332
Q ss_pred eCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCC
Q 042434 372 LSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG 451 (517)
Q Consensus 372 ~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 451 (517)
..-+.. + +............|..++|+|||++|++.+.||.++|||..+. ...-.+...-. .+.|++|||||
T Consensus 273 t~ksk~---~-rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFG---GLLCvcWSPDG 344 (636)
T KOG2394|consen 273 TSKSKK---T-RNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFG---GLLCVCWSPDG 344 (636)
T ss_pred eeeccc---c-CCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH-HHHHHHHhhcc---ceEEEEEcCCc
Confidence 221100 0 0111122223448999999999999999999999999998764 22222222222 26678889999
Q ss_pred cEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCC-------------------------------C-------
Q 042434 452 TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK-------------------------------R------- 493 (517)
Q Consensus 452 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~-------------------------------~------- 493 (517)
+||++|++|--|.||.+...+.+..-++|.+.|+.|+|.|- +
T Consensus 345 KyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~ 424 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPL 424 (636)
T ss_pred cEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcc
Confidence 99999999999999999999999999999999999999830 0
Q ss_pred ---------CcEEEEeeCCCcEEEeCCCCC
Q 042434 494 ---------PKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 494 ---------~~~l~s~~~dg~v~iw~~~~~ 514 (517)
...+.+.|.|-.+.+||+...
T Consensus 425 s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 425 SSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred cccccccceEEEeecccccceEEEEecchh
Confidence 146788899999999998653
No 219
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=3.4e-14 Score=121.85 Aligned_cols=232 Identities=16% Similarity=0.231 Sum_probs=172.7
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc---EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC-C
Q 042434 266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI---CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC-D 341 (517)
Q Consensus 266 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~-~ 341 (517)
-..+|+|.+|++|+..+|.+.....|.||.....+ ..++++.|...|++++|+|..+.|++++.|.. -|+|.. .
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn--ayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN--AYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC--ccccccCC
Confidence 46789999999999999999999999999886654 67788999999999999999999999999999 777777 3
Q ss_pred CCe----eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce------EEeeccCCCeeEEEEcCCCCEEEEE
Q 042434 342 GNE----IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA------ERVISEEHPITSLSVSVDCKNFIVN 411 (517)
Q Consensus 342 ~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~ 411 (517)
+.. +...+. ....+++.|+|.++.+++|+....|.||-.+... .........|++++|+|++-.+++|
T Consensus 87 ~~~WkptlvLlRi--NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRI--NRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEe--ccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 322 222222 2379999999999999999999999999887655 2334556789999999999999999
Q ss_pred eCCCeEEEEEcC-----CC-----CccceEE----eCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc-eeEE
Q 042434 412 LNSQEIHMWDVA-----GK-----WEKPFKY----TGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK-PIEI 476 (517)
Q Consensus 412 ~~d~~i~~~d~~-----~~-----~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~ 476 (517)
+.|+..+++..- .. +.....| ........-+....|+|+|..|+-.+.|+.+.+-|..... .+..
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 999999998751 11 0000000 0000112235556679999999999999999999987664 3333
Q ss_pred ecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434 477 LSGHSMTVNCVSWNPKRPKMLASASDD 503 (517)
Q Consensus 477 ~~~h~~~v~~v~~~~~~~~~l~s~~~d 503 (517)
+..-.-+..++.|-.+. .++.++.|
T Consensus 245 ~~~~~lP~ls~~~ise~--~vv~ag~~ 269 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISEN--SVVAAGYD 269 (361)
T ss_pred hhhccCCceeeEeecCC--ceeecCCC
Confidence 33333677777776543 34455544
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3.3e-14 Score=138.15 Aligned_cols=209 Identities=14% Similarity=0.148 Sum_probs=146.4
Q ss_pred CCcccEEEeccccCcEEEEEECCCCCEEEEeeCC---CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EE
Q 042434 210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSD---CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TC 285 (517)
Q Consensus 210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~ 285 (517)
..+...+.+..+...+.+.+|||||+.|+..+.+ ..|.+||+.++... . +....+.+.+.+|+|||+.|+ +.
T Consensus 183 ~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~---l~~~~g~~~~~~~SPDG~~la~~~ 258 (427)
T PRK02889 183 ADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-V---VANFKGSNSAPAWSPDGRTLAVAL 258 (427)
T ss_pred CCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-E---eecCCCCccceEECCCCCEEEEEE
Confidence 3455556677788899999999999999887643 35999999766432 2 223345567899999999887 45
Q ss_pred eCCCeEEEE--ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEc
Q 042434 286 GNAEVLKLW--DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVT 362 (517)
Q Consensus 286 ~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 362 (517)
+.+|...|| |+.++. ...+..+........|+|||+.++..+. +|...+|..+..+.......... .......|+
T Consensus 259 ~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~S 336 (427)
T PRK02889 259 SRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG-SYNTSPRIS 336 (427)
T ss_pred ccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-CCcCceEEC
Confidence 677766665 454444 4455555556677899999998886654 46667888887765544333221 234467899
Q ss_pred cCCCEEEEEeCCC---cEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCC---eEEEEEcCC
Q 042434 363 PDGENLISVLSDK---DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQ---EIHMWDVAG 424 (517)
Q Consensus 363 ~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~---~i~~~d~~~ 424 (517)
|+|++++..+.++ .|.+||+.++...............|+|||+.++.++.++ .+.+.++.+
T Consensus 337 pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 337 PDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG 404 (427)
T ss_pred CCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence 9999998777654 6999999887744444444457789999999998887644 355555533
No 221
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.66 E-value=3.4e-14 Score=122.23 Aligned_cols=307 Identities=15% Similarity=0.230 Sum_probs=203.1
Q ss_pred cccCCCCCccccccCCCc-ccccCCCcccEEEeccccCcEEEEEECCCCCEEEE-eeCCCcEEEEEecCCCeeeEEEEec
Q 042434 187 SCQYHNSSVAISLYEDHC-CGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLAS-SSSDCSAIIWKVLEDSKLTLKHTLR 264 (517)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t-~~~dg~i~iw~~~~~~~~~~~~~~~ 264 (517)
-|.|.+...-++...+.. ...+..+-+..+.+. .-+.|..+.|..|..+++. ...|+.|.+|++... +....+.
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---ew~ckId 88 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---EWYCKID 88 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecc---eeEEEec
Confidence 466776666443333333 333443333333332 3577888999998876655 467889999999533 4445666
Q ss_pred cCCCCEEEEEECCCCCeEE-EEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc---eeE-----
Q 042434 265 SHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE---KGI----- 335 (517)
Q Consensus 265 ~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~---v~i----- 335 (517)
....++.+++|||||+.|+ +...+-.|.||.+.+.+... ++..+..+..++|+|||++.+.+++-.. +.|
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 7788999999999996555 55668899999998876654 3344566788999999998877664321 001
Q ss_pred ----------------EEEeCCCCeeEeeeC---------cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE---
Q 042434 336 ----------------FMCDCDGNEIKAWRG---------TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE--- 387 (517)
Q Consensus 336 ----------------~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--- 387 (517)
..|..++.-+..+.. +..-.+..++|+|.++++++|+.|+.+++.+--+.+.
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~e 247 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGE 247 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhh
Confidence 134455544444332 1122577899999999999999999888765211100
Q ss_pred -----------------------------------------------------------E------eeccCCCeeEEEEc
Q 042434 388 -----------------------------------------------------------R------VISEEHPITSLSVS 402 (517)
Q Consensus 388 -----------------------------------------------------------~------~~~~~~~i~~~~~s 402 (517)
. .......+.-++|+
T Consensus 248 flhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs 327 (447)
T KOG4497|consen 248 FLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS 327 (447)
T ss_pred hccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec
Confidence 0 00011245678999
Q ss_pred CCCCEEEEEeC--CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCC
Q 042434 403 VDCKNFIVNLN--SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH 480 (517)
Q Consensus 403 ~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 480 (517)
+|..++++-.. -+.+.+||++.. +....+. .. ..|+...|+|....++.+.....+++|.......+.. ++.
T Consensus 328 ~Ds~y~aTrnd~~PnalW~Wdlq~l-~l~avLi-Qk---~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~ 401 (447)
T KOG4497|consen 328 CDSTYAATRNDKYPNALWLWDLQNL-KLHAVLI-QK---HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKK 401 (447)
T ss_pred CCceEEeeecCCCCceEEEEechhh-hhhhhhh-hc---cceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCC
Confidence 99888887654 357999999764 2211111 11 2267777789888888887788899998775444433 334
Q ss_pred CCCeeEEEecCCCCcEEEEeeCCCc
Q 042434 481 SMTVNCVSWNPKRPKMLASASDDHT 505 (517)
Q Consensus 481 ~~~v~~v~~~~~~~~~l~s~~~dg~ 505 (517)
.-.|..+.|+-+| ..++-++.|..
T Consensus 402 GF~i~~l~W~~~g-~~i~l~~kDaf 425 (447)
T KOG4497|consen 402 GFNIQKLQWLQPG-EFIVLCGKDAF 425 (447)
T ss_pred CceeeeEEecCCC-cEEEEEcCCce
Confidence 5689999999999 68888888864
No 222
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.66 E-value=2.4e-14 Score=123.90 Aligned_cols=249 Identities=14% Similarity=0.191 Sum_probs=179.0
Q ss_pred CcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434 211 PTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE 289 (517)
Q Consensus 211 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 289 (517)
.....+.++||.+.|++...-|...-+++.+.|.+++||--.+. +....+ ......+++++.+.++...|++|-..|
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccceEEEEEEecc
Confidence 34567789999999999999998888999999999999965433 222222 223467899999999999999999999
Q ss_pred eEEEEECC----CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCC
Q 042434 290 VLKLWDVE----TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG 365 (517)
Q Consensus 290 ~i~iwd~~----~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 365 (517)
++.-+.+. .....+.+..|...+..+.|+.....+++.+.|..+ .|.....++.+....... ...++.+.-.
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~- 166 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESGNRLGGYNFET--PASALQFDAL- 166 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccce-EEEeeccCCcccceEeec--cCCCCceeeE-
Confidence 99888653 345566677899999999999999999999999863 333332333322111111 0011111111
Q ss_pred CEEEEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceE
Q 042434 366 ENLISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 441 (517)
+...|...|.|.+..+.... ....++...+.+++|.+..+.+.++..|..+.+||+...........+|...+..
T Consensus 167 -~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~ 245 (404)
T KOG1409|consen 167 -YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQA 245 (404)
T ss_pred -EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhh
Confidence 45566666666555443322 5566788899999999999999999999999999998776777777788776333
Q ss_pred EEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 442 IRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 442 i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
...-+--+.+++++.||.|.+|+.+
T Consensus 246 ---l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 246 ---LSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred ---hhhhhhheeeeeccCCCeEEEEecc
Confidence 3223456789999999999999976
No 223
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.6e-14 Score=127.15 Aligned_cols=240 Identities=14% Similarity=0.131 Sum_probs=178.2
Q ss_pred CCCCEEEEEECCCC--CeEEEEeCCCeEEEEECCCCcEEEEe------CCCCCceEEEEEeCCCCeEEEeeCCCceeEEE
Q 042434 266 HQNPVSFVAWSPDD--TKLLTCGNAEVLKLWDVETGICKHTF------GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337 (517)
Q Consensus 266 h~~~v~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~ 337 (517)
-...|..++|.-++ ..+..++.|..+..+.+....+.... .....+|..+... ...|++|..+|. +.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~--l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGN--LQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCc--EEE
Confidence 34567788887655 34555546667777777665544432 2335566666554 346777788888 666
Q ss_pred EeCC-----CCeeEeeeCcCCCceEEEEEccCCCEEE-EEeCC--CcEEEEECCCceEEeec-----------cCCCeeE
Q 042434 338 CDCD-----GNEIKAWRGTRIPKVLDLAVTPDGENLI-SVLSD--KDIRILNLGTYAERVIS-----------EEHPITS 398 (517)
Q Consensus 338 ~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d--g~i~i~d~~~~~~~~~~-----------~~~~i~~ 398 (517)
|... ...+..+..+. .+..+.-++....++ +|+.. ..+.+||+...+..... ..-.++.
T Consensus 130 ~~~k~~d~hss~l~~la~g~--g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATGP--GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecCC--ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 6665 34444444443 566777777666554 58888 78999999887532222 1225678
Q ss_pred EEEcCC--CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEE
Q 042434 399 LSVSVD--CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEI 476 (517)
Q Consensus 399 ~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 476 (517)
+.|-+. ...|++++.-+.+++||.+.+..++..+...... +.+....|+|++|++|..-|.+..||.+.+++...
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~---is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP---ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc---ceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence 888887 8899999999999999999887777777665554 55566679999999999999999999999998877
Q ss_pred -ecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 477 -LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 477 -~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
+.+-.+.|+++..+|.+ .++++||-|..|||+|+.+.+
T Consensus 285 ~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 285 GLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred ccCCccCCcceEEEcCCC-ceEEeeccceeEEEeecccch
Confidence 88899999999999999 699999999999999999854
No 224
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=4.7e-14 Score=138.86 Aligned_cols=271 Identities=18% Similarity=0.240 Sum_probs=188.0
Q ss_pred CCCcccccCCCcccEEEeccc---cCcEEEEEECC--CCCEEEEeeCCCcEEEEEecCC--CeeeEEEEeccC-------
Q 042434 201 EDHCCGRDQIPTETVQILTEH---KNEVWFVQFSN--NGEYLASSSSDCSAIIWKVLED--SKLTLKHTLRSH------- 266 (517)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l~~h---~~~v~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~--~~~~~~~~~~~h------- 266 (517)
.+.++.|+...++....+..+ ...|+.+.+-. |..++.+|+.||.|+||+-... ++.+.+..+.+-
T Consensus 1085 r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~ 1164 (1387)
T KOG1517|consen 1085 RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGA 1164 (1387)
T ss_pred cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccC
Confidence 345667777777777666543 45788888755 5578999999999999976433 333444333221
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC-CCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCC--
Q 042434 267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDG-- 342 (517)
Q Consensus 267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~-- 342 (517)
.+.=.-++|.....+|+++|.-..|+|||.....+.+.+. +....|+++.-+. .|+.+++|..||.+++|.-.+..
T Consensus 1165 r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1165 RGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD 1244 (1387)
T ss_pred CCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc
Confidence 1112446787777777777778899999999888877765 3355677765543 47899999999994444333332
Q ss_pred CeeEeeeCcCC-CceEEEEEccCCC-EEEEEeCCCcEEEEECCCce-EEe---ec---cCCCeeEEEEcCCCCEEEEEeC
Q 042434 343 NEIKAWRGTRI-PKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYA-ERV---IS---EEHPITSLSVSVDCKNFIVNLN 413 (517)
Q Consensus 343 ~~~~~~~~~~~-~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~---~~---~~~~i~~~~~s~~~~~l~~~~~ 413 (517)
..+..++.+.. .+|..+.+.+.|- .+++|+.+|.|++||++... ... .. .+...+++..++....+++|+.
T Consensus 1245 s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 23344444432 2388899988765 49999999999999999833 111 11 1335899999999999999998
Q ss_pred CCeEEEEEcCCCCccceEEeC-c-ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc
Q 042434 414 SQEIHMWDVAGKWEKPFKYTG-H-SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK 472 (517)
Q Consensus 414 d~~i~~~d~~~~~~~~~~~~~-~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 472 (517)
+.|+||++.+......+... . .+....+.++.|+|.--.+|+|+.|.+|.||....+.
T Consensus 1325 -q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1325 -QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred -ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99999999775333333221 1 1223346788889999999999999999999876543
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=6.6e-14 Score=122.00 Aligned_cols=187 Identities=18% Similarity=0.178 Sum_probs=135.4
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCCC-
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVETG- 299 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~- 299 (517)
...+..++|++.-..+|++..|-.|++|+-.... ...++ ......|+|++|-|.+ +-|+.|+.. -|.+|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~-pt~Lk--s~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-PTKLK--SVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCC-Cceec--chhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccc
Confidence 4456778999977778899999999999875421 11111 2235679999999965 556666655 5899976421
Q ss_pred ---cEE--------EEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCE
Q 042434 300 ---ICK--------HTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGEN 367 (517)
Q Consensus 300 ---~~~--------~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 367 (517)
..+ ..++ ....+|+++.|.+||..+++++.+.. .|.+||.+......+.....+.+.-+.|||||.+
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss-si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS-SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred ccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcc-eEEEEcCCCCCcccccccCCCceeeEEEcCCCCE
Confidence 111 1111 12378999999999999999987653 2888998876655555555567899999999999
Q ss_pred EEEEeCCCcEEEEECCC-ce-EEeeccCCCeeEEEEcCCCCEEEEEeC
Q 042434 368 LISVLSDKDIRILNLGT-YA-ERVISEEHPITSLSVSVDCKNFIVNLN 413 (517)
Q Consensus 368 l~~~~~dg~i~i~d~~~-~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~ 413 (517)
+++++-|+..++|+... .. .......+.+...+|+|+|++++....
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc
Confidence 99999999999996543 33 334444559999999999998776653
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=4.9e-15 Score=135.65 Aligned_cols=215 Identities=18% Similarity=0.245 Sum_probs=157.2
Q ss_pred EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC-CCCCceEEEEEeC--CCCeEEEeeCCCceeE
Q 042434 259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAWFP--DSKRLVCGSSDTEKGI 335 (517)
Q Consensus 259 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~--~~~~l~~~~~d~~v~i 335 (517)
....+.||++.|.|+.|+.+|.+|++|+.|-.+.|||.-..+.++.+. +|...|.++.|-| +.+.+++|..|.. |
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~--i 119 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL--I 119 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcce--E
Confidence 346788999999999999999999999999999999998888877764 8999999999999 4668899999999 5
Q ss_pred EEEeCCC-----------CeeEeeeCcCCCceEEEEEccCC-CEEEEEeCCCcEEEEECCCceEE------------eec
Q 042434 336 FMCDCDG-----------NEIKAWRGTRIPKVLDLAVTPDG-ENLISVLSDKDIRILNLGTYAER------------VIS 391 (517)
Q Consensus 336 ~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~------------~~~ 391 (517)
+++|+.. .+...+ ..+...|..++..|++ ..+.+++.||+|+-||++....- ...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCW-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEEecccccccccccCccchhhhh-hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 5555542 111222 2334578889999998 68899999999999999874311 011
Q ss_pred cCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCC-------Cc----------cceEE-eCcc--------cCceEEEe
Q 042434 392 EEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGK-------WE----------KPFKY-TGHS--------QNKYVIRS 444 (517)
Q Consensus 392 ~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~-------~~----------~~~~~-~~~~--------~~~~~i~~ 444 (517)
..-...++.++|. ..+|++|+.|...++||.+.. +. .+..+ .+|. ....+++.
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 1235678899995 567889999999999995321 00 01111 1222 11233566
Q ss_pred ecCCCCCcEEEEecCCCcEEEEecCCCceeEE
Q 042434 445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEI 476 (517)
Q Consensus 445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 476 (517)
+.|+|+|.-|++.-..-.|+++|+..++....
T Consensus 279 vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred EEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 67899998777766666899999988765443
No 227
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=2.7e-15 Score=134.65 Aligned_cols=276 Identities=13% Similarity=0.173 Sum_probs=199.4
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC 301 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 301 (517)
.-..+.+.++.+|++|+.|+.-|.+-.+|+.+. .....+. -...|.++.|-.+..++|++ ....+.|||- .|..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~---~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtE 202 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK---KLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTE 202 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccc---eeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcE
Confidence 345567899999999999999999999999755 3333332 24678999999888888875 5568999994 6777
Q ss_pred EEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEE
Q 042434 302 KHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILN 381 (517)
Q Consensus 302 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 381 (517)
++.++.+ ..|..+.|.|..-+|++++..|. +..-|.....+..-.....+.+..++-+|-+..+-+|..+|+|.+|.
T Consensus 203 lHClk~~-~~v~rLeFLPyHfLL~~~~~~G~--L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 203 LHCLKRH-IRVARLEFLPYHFLLVAASEAGF--LKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWS 279 (545)
T ss_pred Eeehhhc-CchhhhcccchhheeeecccCCc--eEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecC
Confidence 7777554 56888999999989999999998 77777775554433333446788899999999999999999999999
Q ss_pred CCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC
Q 042434 382 LGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE 459 (517)
Q Consensus 382 ~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 459 (517)
..... .....|.++|.++++.++|.|+++++.|..++|||++...........+. ...+.+|..| +++.+.
T Consensus 280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~-----a~~ls~Sqkg--lLA~~~ 352 (545)
T KOG1272|consen 280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHP-----ASNLSLSQKG--LLALSY 352 (545)
T ss_pred CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCC-----cccccccccc--ceeeec
Confidence 98877 66778999999999999999999999999999999988743333333222 2233334444 344445
Q ss_pred CCcEEEEe-cCCCc--eeEEecCC--CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 460 NSQIYIWN-RRNSK--PIEILSGH--SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 460 dg~i~iwd-~~~~~--~~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
...+.||. .-.+. .-..+-.| .+.|.++.|.|-. .+|-.|...|.-.|-=+..|
T Consensus 353 G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E-DvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 353 GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE-DVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHH-HeeeccccCCceeEeccCCC
Confidence 55799994 32221 11111123 3589999999976 56665555554444433333
No 228
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=1.4e-16 Score=153.38 Aligned_cols=294 Identities=15% Similarity=0.150 Sum_probs=201.3
Q ss_pred CcchHHHHHHHHHHhccccccCCCCCc-cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEE
Q 042434 169 PERRLEHLVETAVTSQIDSCQYHNSSV-AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAI 247 (517)
Q Consensus 169 ~~~rl~~l~~~~~~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~ 247 (517)
.+..|..++.+.++.|..+|..+.... .|+++..|.|.-.....+....+.+-.+.= -.+++.+. +-.+..|....
T Consensus 1011 ~~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~~r--el~~~y~g-V~g~~~dr~~I 1087 (1516)
T KOG1832|consen 1011 ERLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLGTR--ELQSFYSG-VHGNRRDRQFI 1087 (1516)
T ss_pred CCCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcccch--hhcCcccc-cccCcccchhh
Confidence 356789999999999999999987777 899999999865433333222222211111 11222211 22223333322
Q ss_pred EEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEe
Q 042434 248 IWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCG 327 (517)
Q Consensus 248 iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 327 (517)
+ ..++..+++..|+...+|++|+.+.+.|+.|+..|.|+++++.+|........|..+|+.+.-+.+|...++.
T Consensus 1088 -F-----SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1088 -F-----SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred -H-----hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeee
Confidence 2 2334556788899999999999999999999999999999999999999999999999999999999988877
Q ss_pred eCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE--E----eeccCCCeeEE
Q 042434 328 SSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE--R----VISEEHPITSL 399 (517)
Q Consensus 328 ~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~----~~~~~~~i~~~ 399 (517)
+.-..--.-+|+... .....+. .-.++.|+.....-+.|+......+||+.++.. . .......-+..
T Consensus 1162 ss~S~PlsaLW~~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred ccccCchHHHhccccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence 655432244566542 3333332 345677877655556677777899999998761 1 11222234778
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC
Q 042434 400 SVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG 479 (517)
Q Consensus 400 ~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 479 (517)
.|+|+...++- || .+||++.. ..+..|...... + .-.|+|.|.-++.-++ |||+++.++++..+.
T Consensus 1237 ~FsP~D~LIln---dG--vLWDvR~~-~aIh~FD~ft~~---~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1237 HFSPCDTLILN---DG--VLWDVRIP-EAIHRFDQFTDY---G-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS 1301 (1516)
T ss_pred ccCCCcceEee---Cc--eeeeeccH-HHHhhhhhheec---c-cccccCCCceEEeech-----hhhhHHHHHHhcCcc
Confidence 89999887763 44 68999876 556555544421 1 2234899999998876 999999998877653
Q ss_pred CCCCeeEEEecCCC
Q 042434 480 HSMTVNCVSWNPKR 493 (517)
Q Consensus 480 h~~~v~~v~~~~~~ 493 (517)
- .-..|.|+..|
T Consensus 1302 L--dqc~VtFNstG 1313 (1516)
T KOG1832|consen 1302 L--DQCAVTFNSTG 1313 (1516)
T ss_pred c--cceEEEeccCc
Confidence 2 23467777777
No 229
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.63 E-value=6.6e-12 Score=118.51 Aligned_cols=268 Identities=14% Similarity=0.193 Sum_probs=173.5
Q ss_pred ccCcEEEEEECCCCCEEEEeeC----CCcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-CCeEEEE
Q 042434 221 HKNEVWFVQFSNNGEYLASSSS----DCSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-AEVLKLW 294 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~----dg~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iw 294 (517)
-......++++|++++|.++.. +|.|..|++... ..+..+............++++|++++|+++.. +|.|.++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 4556677899999999998866 579999999876 566676666655666788999999999998875 8899999
Q ss_pred ECCC-CcEEEE---eC----------CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe--e---EeeeCcCCCc
Q 042434 295 DVET-GICKHT---FG----------DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE--I---KAWRGTRIPK 355 (517)
Q Consensus 295 d~~~-~~~~~~---~~----------~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~---~~~~~~~~~~ 355 (517)
++.. |..... +. .......++.++|+++++++..... -+|+.++.+... + ..........
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~-D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA-DRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT-TEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC-CEEEEEEEeCCCceEEEeeccccccCCC
Confidence 9976 443322 21 1245578899999999988875432 236665554322 3 2233344456
Q ss_pred eEEEEEccCCCEEEEEe-CCCcEEEEECC--CceE---E---eec----cCCCeeEEEEcCCCCEEEEEeC-CCeEEEEE
Q 042434 356 VLDLAVTPDGENLISVL-SDKDIRILNLG--TYAE---R---VIS----EEHPITSLSVSVDCKNFIVNLN-SQEIHMWD 421 (517)
Q Consensus 356 i~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~---~---~~~----~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d 421 (517)
...+.|+|+++++++.. .++.|.+|++. ++.. . ... .......+.++|||++++++.. .+.|.+|+
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 88999999999876655 57789999887 3321 1 111 1125788999999999888765 67899999
Q ss_pred cCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec-CCCcEEEEec--CCCceeEEec-CCCCCeeEEEe
Q 042434 422 VAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS-ENSQIYIWNR--RNSKPIEILS-GHSMTVNCVSW 489 (517)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~~-~h~~~v~~v~~ 489 (517)
+....................+.+.++|+|++|+++. .++.|.+|++ .+|.+...-. ..-....||.|
T Consensus 274 ~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp ECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 9432122222221111111134455599999999887 4568999866 5666544432 12344566655
No 230
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=4.3e-13 Score=123.73 Aligned_cols=273 Identities=16% Similarity=0.254 Sum_probs=172.8
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE-----eCC-----CeE
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC-----GNA-----EVL 291 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-----~~d-----g~i 291 (517)
..+++..++|++|+++|.+. +..++|++..... .+.+.. ...+.++.|+|-|++|.+= ..+ -.+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~---~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~ 107 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLK---VVLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNV 107 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCc---EEEEec--cceeeeeeecccccccccccccccccCCCCCCCce
Confidence 44577889999999988865 5689999986554 222222 2278999999999988752 222 257
Q ss_pred EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe---------------------------
Q 042434 292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE--------------------------- 344 (517)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--------------------------- 344 (517)
.+|+++++.....+......-++..|+.|..+.+--.. +. +.+++..+..
T Consensus 108 ~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~-ne--v~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAv 184 (566)
T KOG2315|consen 108 LVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVS-NE--VQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAV 184 (566)
T ss_pred eeeeeccceehhheehhhhcCcccccccchhhhhhhhc-ce--EEEEecCCccceeeeeeccceeeEEecCCCCCceEEE
Confidence 79999996555444332222257778877543321111 11 3333332210
Q ss_pred -----------eEeeeCc----C---------CCceEEEEEccCCCE-EEEEeC-----------CCcEEEEECCCce-E
Q 042434 345 -----------IKAWRGT----R---------IPKVLDLAVTPDGEN-LISVLS-----------DKDIRILNLGTYA-E 387 (517)
Q Consensus 345 -----------~~~~~~~----~---------~~~i~~~~~~~~~~~-l~~~~~-----------dg~i~i~d~~~~~-~ 387 (517)
++.+... + ...-..+.|++-|.- |+.++. ..+++++++.... .
T Consensus 185 yvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~ 264 (566)
T KOG2315|consen 185 YVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS 264 (566)
T ss_pred EccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE
Confidence 0111000 0 001123556655552 222221 2357777777444 3
Q ss_pred EeeccCCCeeEEEEcCCCCEEEEE--eCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC---Cc
Q 042434 388 RVISEEHPITSLSVSVDCKNFIVN--LNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN---SQ 462 (517)
Q Consensus 388 ~~~~~~~~i~~~~~s~~~~~l~~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~ 462 (517)
......++|.++.|+|+++-++++ ..-..+.+||++.. .+..+.... -..++|+|.|++++.++.+ |.
T Consensus 265 V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~--~v~df~egp-----RN~~~fnp~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 265 VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK--PVFDFPEGP-----RNTAFFNPHGNIILLAGFGNLPGD 337 (566)
T ss_pred EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC--EeEeCCCCC-----ccceEECCCCCEEEEeecCCCCCc
Confidence 344557899999999999887665 44678999999763 444433222 3356679999999988865 79
Q ss_pred EEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC------CCcEEEeCCCC
Q 042434 463 IYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD------DHTIRIWGPCQ 513 (517)
Q Consensus 463 i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~------dg~v~iw~~~~ 513 (517)
|-|||+.+.+++..+..- .-+-+.|+||| .+++|++. |+.++||++..
T Consensus 338 mEvwDv~n~K~i~~~~a~--~tt~~eW~PdG-e~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFKAA--NTTVFEWSPDG-EYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred eEEEeccchhhccccccC--CceEEEEcCCC-cEEEEEeccccEEecCCeEEEEecC
Confidence 999999999998888753 34567999999 57777664 78899999864
No 231
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.2e-13 Score=125.16 Aligned_cols=275 Identities=16% Similarity=0.304 Sum_probs=175.1
Q ss_pred CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-----------CCeE
Q 042434 223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-----------AEVL 291 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-----------dg~i 291 (517)
=.-+-+.|||.|.||+|--.-| |.+|-- ..+..++.+ .|. .|.-+.|||..+||++-+. ...+
T Consensus 211 WTetyv~wSP~GTYL~t~Hk~G-I~lWGG---~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 211 WTETYVRWSPKGTYLVTFHKQG-IALWGG---ESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred ceeeeEEecCCceEEEEEeccc-eeeecC---ccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceE
Confidence 3456789999999999988766 889953 333333333 243 5899999999999998653 1479
Q ss_pred EEEECCCCcEEEEeCCC--CCceE-EEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEE
Q 042434 292 KLWDVETGICKHTFGDH--GFIVS-SCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENL 368 (517)
Q Consensus 292 ~iwd~~~~~~~~~~~~~--~~~v~-~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 368 (517)
+|||+.+|...+.|... ...++ -..||.|++++|.-..++ |.+++...-.+........+.|....|+|.++.|
T Consensus 285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s---isIyEtpsf~lld~Kslki~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS---ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLL 361 (698)
T ss_pred EEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce---EEEEecCceeeecccccCCccccCcccCCCcceE
Confidence 99999999998888653 33333 368999999999887765 5556554433322222233345555566555444
Q ss_pred EEEeCC---------------------------------------------------------CcEEEEECCCce--EEe
Q 042434 369 ISVLSD---------------------------------------------------------KDIRILNLGTYA--ERV 389 (517)
Q Consensus 369 ~~~~~d---------------------------------------------------------g~i~i~d~~~~~--~~~ 389 (517)
+-=+.. ..+-|+.++... ...
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 321110 012222222222 122
Q ss_pred eccCCCeeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCC---ccceEEeCcccCceEEEeecCCCCCcEEEEe---cCC
Q 042434 390 ISEEHPITSLSVSVDCKNFIVNLN---SQEIHMWDVAGKW---EKPFKYTGHSQNKYVIRSCFGGLDGTFIASG---SEN 460 (517)
Q Consensus 390 ~~~~~~i~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---~~d 460 (517)
......+...+|-|.|+.+++-+. ..++.+|.+.+.. ..+..+.. .....++|+|.|++++.+ |..
T Consensus 442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-----~~~N~vfwsPkG~fvvva~l~s~~ 516 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-----KFANTVFWSPKGRFVVVAALVSRR 516 (698)
T ss_pred eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-----cccceEEEcCCCcEEEEEEecccc
Confidence 233456788899999998877654 3578888886421 22222222 224567789999999876 457
Q ss_pred CcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC------CCcEEEeCCC
Q 042434 461 SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD------DHTIRIWGPC 512 (517)
Q Consensus 461 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~------dg~v~iw~~~ 512 (517)
|.+.++|.....+..+-.......+.+.|.|.| ++++|++. |.--+||++.
T Consensus 517 g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtG-RYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 517 GDLEFYDTDYADLKDTASPEHFAATEVEWDPTG-RYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred cceEEEecchhhhhhccCccccccccceECCCC-CEEEEeeehhhhccccceEEEEee
Confidence 899999987533333322223456889999999 68888875 4446666654
No 232
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=7.8e-13 Score=128.88 Aligned_cols=235 Identities=19% Similarity=0.172 Sum_probs=156.3
Q ss_pred cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC-C--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCC
Q 042434 245 SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-E--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDS 321 (517)
Q Consensus 245 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 321 (517)
.+.++|...... +.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++.... ...........|+|||
T Consensus 199 ~l~i~d~dG~~~----~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYNE----QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCCc----eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCC
Confidence 566667643321 2344567789999999999999876543 2 688999988875432 2223344578999999
Q ss_pred CeEEE-eeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CC--cEEEEECCCceEE-eeccCCCe
Q 042434 322 KRLVC-GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DK--DIRILNLGTYAER-VISEEHPI 396 (517)
Q Consensus 322 ~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~-~~~~~~~i 396 (517)
+.|+. .+.++...||.++..+.....+.... .......|+|||+.++..+. ++ .|+++|+.+++.. ........
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~-~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~ 352 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTRITRHR-AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN 352 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEECccCC-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC
Confidence 98765 56677777999999877766655433 34567899999998876654 33 5777788776632 22233334
Q ss_pred eEEEEcCCCCEEEEEeCC-C--eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC-C--cEEEEecCC
Q 042434 397 TSLSVSVDCKNFIVNLNS-Q--EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-S--QIYIWNRRN 470 (517)
Q Consensus 397 ~~~~~s~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~ 470 (517)
...+|+|||++++..+.+ + .|.++|+.++.. ..+...... ....|+|||+.|+..+.+ | .+++++. +
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~--~~lt~~~~d----~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~ 425 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM--QVLTSTRLD----ESPSVAPNGTMVIYSTTYQGKQVLAAVSI-D 425 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCe--EEccCCCCC----CCceECCCCCEEEEEEecCCceEEEEEEC-C
Confidence 567999999998877653 3 466677766522 222211111 112458999988776544 3 4778886 5
Q ss_pred CceeEEecCCCCCeeEEEecCC
Q 042434 471 SKPIEILSGHSMTVNCVSWNPK 492 (517)
Q Consensus 471 ~~~~~~~~~h~~~v~~v~~~~~ 492 (517)
|.....+..+.+.+...+|+|-
T Consensus 426 G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 426 GRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCceEECcCCCCCcCCCccCCC
Confidence 7777777777777888999873
No 233
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.61 E-value=8e-13 Score=129.35 Aligned_cols=234 Identities=18% Similarity=0.165 Sum_probs=158.0
Q ss_pred CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---CeEEEEECCCCcEEEEeCCCCCceEEEEEeCC
Q 042434 244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---EVLKLWDVETGICKHTFGDHGFIVSSCAWFPD 320 (517)
Q Consensus 244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 320 (517)
..|.++|..... ...+..+...+.+.+|+|||++|+.++.+ ..|.+||+.+++.... ..+...+.+++|+||
T Consensus 170 ~~l~~~d~~g~~----~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spD 244 (417)
T TIGR02800 170 YELQVADYDGAN----PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPD 244 (417)
T ss_pred ceEEEEcCCCCC----CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCC
Confidence 356777764322 13344566789999999999999987654 4799999998865443 345556677999999
Q ss_pred CCeEEE-eeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC-C--cEEEEECCCce-EEeeccCCC
Q 042434 321 SKRLVC-GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD-K--DIRILNLGTYA-ERVISEEHP 395 (517)
Q Consensus 321 ~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~-~~~~~~~~~ 395 (517)
|+.|+. .+.++...++.|+..+.....+.... .......|+|+|+.++..+.. + .|+++|+.+.. .........
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~ 323 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY 323 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence 997764 45566666999999876665554433 234567899999988766543 3 58888887766 333335556
Q ss_pred eeEEEEcCCCCEEEEEeCCC---eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC---cEEEEecC
Q 042434 396 ITSLSVSVDCKNFIVNLNSQ---EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS---QIYIWNRR 469 (517)
Q Consensus 396 i~~~~~s~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~~ 469 (517)
.....|+|+|++++.+..++ .|.+||+.++.. ..+..... .....|+|||++|+..+.++ .+++.+.
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~----~~~p~~spdg~~l~~~~~~~~~~~l~~~~~- 396 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE--RVLTDTGL----DESPSFAPNGRMILYATTRGGRGVLGLVST- 396 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe--EEccCCCC----CCCceECCCCCEEEEEEeCCCcEEEEEEEC-
Confidence 77889999999999988776 789999876422 22221111 12234589999888877654 4555554
Q ss_pred CCceeEEecCCCCCeeEEEec
Q 042434 470 NSKPIEILSGHSMTVNCVSWN 490 (517)
Q Consensus 470 ~~~~~~~~~~h~~~v~~v~~~ 490 (517)
+++....+..+.+.+..++|+
T Consensus 397 ~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 397 DGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred CCceeeECCCCCCCcCCCCCC
Confidence 455556665555566666553
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=8.6e-13 Score=113.34 Aligned_cols=233 Identities=15% Similarity=0.236 Sum_probs=154.1
Q ss_pred CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCC--ceEEEEEeCCCCeEEE-eeCCC----ceeEEEEeCC
Q 042434 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGF--IVSSCAWFPDSKRLVC-GSSDT----EKGIFMCDCD 341 (517)
Q Consensus 269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~~-~~~d~----~v~i~~~~~~ 341 (517)
...+++|+.|..-+++|..+| .+||+.+.-+.......+.+ .+..+-| ..++++. |+.+. ..++.+||-.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 345599999998888877665 79998865433222222222 2222222 2334443 33331 2347888854
Q ss_pred -CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEee---ccCCCeeEEEEcCCCCEEEE-EeCC
Q 042434 342 -GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVI---SEEHPITSLSVSVDCKNFIV-NLNS 414 (517)
Q Consensus 342 -~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~---~~~~~i~~~~~s~~~~~l~~-~~~d 414 (517)
..++..+.... +|.++.+.++ .+++. ..+.|+||...+.. ...+ ..+....+++-..+...++. |..-
T Consensus 84 k~~~i~el~f~~--~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 84 KERCIIELSFNS--EIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cCcEEEEEEecc--ceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 44444444433 7999998876 34433 56789999987433 2211 11222333332223333443 3347
Q ss_pred CeEEEEEcCCCCc-cceEEeCcccCceEEEeecCCCCCcEEEEecCCCc-EEEEecCCCceeEEecC--CCCCeeEEEec
Q 042434 415 QEIHMWDVAGKWE-KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ-IYIWNRRNSKPIEILSG--HSMTVNCVSWN 490 (517)
Q Consensus 415 ~~i~~~d~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~v~~~ 490 (517)
|.|++-|+..... .+..+..|... |.++..+.+|..+|++|..|+ |+|||..+|+++..+.- ....|.+++|+
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~---Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSD---IACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCc---eeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 8999999976533 45777888876 666777899999999999996 79999999999999873 34689999999
Q ss_pred CCCCcEEEEeeCCCcEEEeCCCC
Q 042434 491 PKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 491 ~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
|+. .+||.+|+-|+|+|+.+..
T Consensus 236 p~~-s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 236 PNS-SWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCc-cEEEEEcCCCeEEEEEeec
Confidence 999 7999999999999998865
No 235
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.2e-14 Score=131.38 Aligned_cols=257 Identities=21% Similarity=0.256 Sum_probs=191.3
Q ss_pred eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC-CCCCceEEEEEeCC--CCeEEEeeCCCcee
Q 042434 258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAWFPD--SKRLVCGSSDTEKG 334 (517)
Q Consensus 258 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~--~~~l~~~~~d~~v~ 334 (517)
.....+..|.+.|..+.|...|..|++|+.|..|.+||...++....+. +|...|....|.|. ...+++++.||.++
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 3446678899999999999999999999999999999999998877764 78888888888884 56899999999988
Q ss_pred EEEEeCCCCee-EeeeCcCCCceEEEEEccCCC-EEEEEeCCCcEEEEECCCce----EEeec-cCC---CeeEEEEcCC
Q 042434 335 IFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYA----ERVIS-EEH---PITSLSVSVD 404 (517)
Q Consensus 335 i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~----~~~~~-~~~---~i~~~~~s~~ 404 (517)
+-.....+... ......+.++|.-++.-|+.. .|.+++.|+.+.-+|++... ..... ... ....++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 88777776555 334455667899999999765 68899999999999998765 11111 112 4577888886
Q ss_pred CC-EEEEEeCCCeEEEEEcCCCCcc-----ceEEeCcc---cCceEEEeecCCCCCcEEEEecCCCcEEEEecCC--C--
Q 042434 405 CK-NFIVNLNSQEIHMWDVAGKWEK-----PFKYTGHS---QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN--S-- 471 (517)
Q Consensus 405 ~~-~l~~~~~d~~i~~~d~~~~~~~-----~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~-- 471 (517)
.. .+++++.|..+++||.+.-... +..+..+. .....|+++.++.++.-+.+.-.|-.|+++.-.- |
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 55 7899999999999998653221 11221111 2234477777787777777777788899995332 2
Q ss_pred --------ceeE-EecCCC--CCeeEEEec-CCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 472 --------KPIE-ILSGHS--MTVNCVSWN-PKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 472 --------~~~~-~~~~h~--~~v~~v~~~-~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
..+. .++||. ..|.++-|- |.. .++++||+-|.|.||+-.+++
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEecchhH
Confidence 1222 367885 357777664 555 799999999999999987765
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=9.2e-13 Score=123.93 Aligned_cols=268 Identities=13% Similarity=0.103 Sum_probs=166.8
Q ss_pred EEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEE
Q 042434 238 ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAW 317 (517)
Q Consensus 238 ~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 317 (517)
++-..+|.|.|.|..+. +.+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.++... ....++++
T Consensus 10 V~~~~~~~v~viD~~t~---~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~ 85 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATN---KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAV 85 (369)
T ss_dssp EEEGGGTEEEEEETTT----SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE
T ss_pred EEecCCCEEEEEECCCC---eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEE
Confidence 45567899999998655 444555544444455789999999999999999999999999999988544 45688999
Q ss_pred eCCCCeEEEee-CCCceeEEEEeCCCC-eeEeeeCc------CCCceEEEEEccCCCEEEEEeC-CCcEEEEECCCce--
Q 042434 318 FPDSKRLVCGS-SDTEKGIFMCDCDGN-EIKAWRGT------RIPKVLDLAVTPDGENLISVLS-DKDIRILNLGTYA-- 386 (517)
Q Consensus 318 ~~~~~~l~~~~-~d~~v~i~~~~~~~~-~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~-- 386 (517)
++||++++++. ..+. +.++|..+. .++.+... ..+.+..+..+|.+..++..-. .+.|.+.|.....
T Consensus 86 s~DG~~~~v~n~~~~~--v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGT--VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp --TTTEEEEEEEETTE--EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred cCCCCEEEEEecCCCc--eeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 99999998876 4666 888897754 34443322 2346778888888886655544 5889899977654
Q ss_pred -EEeeccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEe-C---cccCceEEE-------eecCCCCCcE
Q 042434 387 -ERVISEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYT-G---HSQNKYVIR-------SCFGGLDGTF 453 (517)
Q Consensus 387 -~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~-~---~~~~~~~i~-------~~~~s~~~~~ 453 (517)
..............|+|++++++++ ..++.|.++|..+. ....... + |......+- +.. +..+..
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v~~i~~g~~p~~~~~~~~php~~g~vw~~-~~~~~~ 241 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLVALIDTGKKPHPGPGANFPHPGFGPVWAT-SGLGYF 241 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEEEEEE-SSSBEETTEEEEEETTTEEEEEE-EBSSSS
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccc-eEEEEeeccccccccccccccCCCcceEEee-ccccce
Confidence 3445566678889999999998775 45778999998775 3322221 1 111111000 000 112223
Q ss_pred EEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEe----eCCCcEEEeCCCCCC
Q 042434 454 IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASA----SDDHTIRIWGPCQSS 515 (517)
Q Consensus 454 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~----~~dg~v~iw~~~~~~ 515 (517)
.++.-....+.+||..+.+.+.++....++ .-+..||+++ ++... ...++|.++|..+.+
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~-~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSR-YVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-S-EEEEE-TT-SSHT-EEEEECCGTE
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCc-cEEeeccCCCCCceEEEEECcCcc
Confidence 322222345668999999999999976666 8889999995 55555 556899999988753
No 237
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.6e-12 Score=127.27 Aligned_cols=235 Identities=16% Similarity=0.140 Sum_probs=157.0
Q ss_pred cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCC
Q 042434 245 SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDS 321 (517)
Q Consensus 245 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 321 (517)
.|.++|.+... ...+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||
T Consensus 180 ~l~~~d~~g~~----~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGAR----AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCCC----ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCC
Confidence 36666665332 13344567789999999999999876644 369999999887544 33334455678999999
Q ss_pred CeEEE-eeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CC--cEEEEECCCceEE-eeccCCCe
Q 042434 322 KRLVC-GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DK--DIRILNLGTYAER-VISEEHPI 396 (517)
Q Consensus 322 ~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~-~~~~~~~i 396 (517)
+.++. .+.+|...||.+|..+.....+.... .......|+|||+.++..+. +| .|+++|+.++... ........
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~ 333 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP-AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN 333 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeEEcccCC-CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence 98874 55566666999999887766554433 34566789999998876654 33 5778888776632 22223334
Q ss_pred eEEEEcCCCCEEEEEeCC-C--eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC---CcEEEEecCC
Q 042434 397 TSLSVSVDCKNFIVNLNS-Q--EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN---SQIYIWNRRN 470 (517)
Q Consensus 397 ~~~~~s~~~~~l~~~~~d-~--~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~ 470 (517)
....|+|+|+.++....+ + .|.+||+.++.. ..+...... . ...|+|||+.++..+.+ ..|++++..
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~~~~~-~---~p~~spdg~~i~~~~~~~g~~~l~~~~~~- 406 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV--RILTDTSLD-E---SPSVAPNGTMLIYATRQQGRGVLMLVSIN- 406 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCCCE--EEccCCCCC-C---CceECCCCCEEEEEEecCCceEEEEEECC-
Confidence 567899999999887653 3 588899877522 222211111 1 22458999998877654 357777874
Q ss_pred CceeEEecCCCCCeeEEEecCC
Q 042434 471 SKPIEILSGHSMTVNCVSWNPK 492 (517)
Q Consensus 471 ~~~~~~~~~h~~~v~~v~~~~~ 492 (517)
|.....+..+.+.+...+|+|-
T Consensus 407 g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 407 GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCceEECcCCCCCcCCCccCCC
Confidence 5555566656677888888874
No 238
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=9.3e-12 Score=117.50 Aligned_cols=275 Identities=15% Similarity=0.166 Sum_probs=175.4
Q ss_pred EEEeeCC----CcEEEEEec-CCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC----CCeEEEEECCCC--c--EEE
Q 042434 237 LASSSSD----CSAIIWKVL-EDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN----AEVLKLWDVETG--I--CKH 303 (517)
Q Consensus 237 l~t~~~d----g~i~iw~~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----dg~i~iwd~~~~--~--~~~ 303 (517)
++.|+.. +.|.+|+++ ....+....... .......++++|++++|.++.. +|.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4455554 789999993 334555555433 3455678999999999998866 568999988653 3 333
Q ss_pred EeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEe---ee---------CcCCCceEEEEEccCCCEEEE
Q 042434 304 TFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKA---WR---------GTRIPKVLDLAVTPDGENLIS 370 (517)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~---~~---------~~~~~~i~~~~~~~~~~~l~~ 370 (517)
...........++++|++++++++.. +|.+.++..+..+..... +. ........++.++|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 33334556678999999999999875 777555555544322221 11 112346889999999998887
Q ss_pred EeC-CCcEEEEECCCce-------EEeeccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCc---cceEEeCcc--
Q 042434 371 VLS-DKDIRILNLGTYA-------ERVISEEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGKWE---KPFKYTGHS-- 436 (517)
Q Consensus 371 ~~~-dg~i~i~d~~~~~-------~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~---~~~~~~~~~-- 436 (517)
... ...|.+|++.... ............+.|+|+++++++... ++.|.+|++..... .........
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 654 4579999987644 123355667899999999998876655 77899999872211 111222111
Q ss_pred -cCceEEEeecCCCCCcEEEEecC-CCcEEEEecC--CCc--eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 437 -QNKYVIRSCFGGLDGTFIASGSE-NSQIYIWNRR--NSK--PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 437 -~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~--~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
........+.++|||++|+++.. ++.|.+|++. +++ .+..+.......+.++++|+|..++++.-.++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 11112334455999999888764 5689999983 343 33444433455899999999954555555778999997
Q ss_pred CC
Q 042434 511 PC 512 (517)
Q Consensus 511 ~~ 512 (517)
++
T Consensus 321 ~d 322 (345)
T PF10282_consen 321 ID 322 (345)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 239
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.58 E-value=1.1e-13 Score=115.60 Aligned_cols=225 Identities=17% Similarity=0.209 Sum_probs=158.0
Q ss_pred ccccCCCccc-ccCCCcccEEEec-cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEE--------------
Q 042434 197 ISLYEDHCCG-RDQIPTETVQILT-EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLK-------------- 260 (517)
Q Consensus 197 ~~~~~~~~~~-~~~~~~~~~~~l~-~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-------------- 260 (517)
++....+... |..........++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++..+......
T Consensus 29 ~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl 107 (323)
T KOG0322|consen 29 MSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSL 107 (323)
T ss_pred hcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeecccccccccee
Confidence 3333333333 3334445566667 57789999998888 45778889999999987532110000
Q ss_pred --------EEe----------------------------ccCCCCEEEEEECC-CCC--eEEEEeCCCeEEEEECCCCcE
Q 042434 261 --------HTL----------------------------RSHQNPVSFVAWSP-DDT--KLLTCGNAEVLKLWDVETGIC 301 (517)
Q Consensus 261 --------~~~----------------------------~~h~~~v~~l~~s~-~~~--~l~s~~~dg~i~iwd~~~~~~ 301 (517)
..+ .+..+.+.|..|.. ++. ++++|-.+|.+.+||+.++..
T Consensus 108 ~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~ 187 (323)
T KOG0322|consen 108 VKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK 187 (323)
T ss_pred ccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce
Confidence 000 01134566666533 232 355677799999999999844
Q ss_pred EE----------EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCCCEEE
Q 042434 302 KH----------TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDGENLI 369 (517)
Q Consensus 302 ~~----------~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~ 369 (517)
+- ....|..+|.++.+.+.-..=++|+.+..+..|.++-.. -++..........+..+.+-||++.++
T Consensus 188 ~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlA 267 (323)
T KOG0322|consen 188 IIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILA 267 (323)
T ss_pred eeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEe
Confidence 33 334688999999998876666777777774455444442 223333333345788899999999999
Q ss_pred EEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434 370 SVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV 422 (517)
Q Consensus 370 ~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~ 422 (517)
+++.|+.|+||..++.. .....|...+++++|+|+...+++++.|++|.+|++
T Consensus 268 TAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 268 TAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999988 566678899999999999999999999999999986
No 240
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=4.4e-13 Score=126.81 Aligned_cols=274 Identities=16% Similarity=0.242 Sum_probs=201.1
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC------------eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS------------KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE 289 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~------------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 289 (517)
.....|++|+.+..|+|.|+.||.++|..+.+.. .+..-.++.+|...|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4567899999999999999999999999875432 2334467889999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEe--CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE--eeeCcCCCceEEEEEccCC
Q 042434 290 VLKLWDVETGICKHTF--GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK--AWRGTRIPKVLDLAVTPDG 365 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~ 365 (517)
.|.||-+-.|.....+ ...++.|.+++|+.||..+.....||. |.+-..+|+.+- .+.+. ....+.|++|.
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGa--vIVGsvdGNRIwgKeLkg~---~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGA--VIVGSVDGNRIWGKELKGQ---LLAHVLWSEDL 168 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCC--EEEEeeccceecchhcchh---eccceeecccH
Confidence 9999998777543332 244678999999999999999999999 666666665542 22222 34568899999
Q ss_pred CEEEEEeCCCcEEEEECCCce-------------EEeeccCCCeeEEEEc--------CCCCEEEEEeCCCeEEEEEcCC
Q 042434 366 ENLISVLSDKDIRILNLGTYA-------------ERVISEEHPITSLSVS--------VDCKNFIVNLNSQEIHMWDVAG 424 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~-------------~~~~~~~~~i~~~~~s--------~~~~~l~~~~~d~~i~~~d~~~ 424 (517)
+.++.+-.+|.+++||....- ......+..+..+.|. |+...++++..+|.+.+..-.+
T Consensus 169 ~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 169 EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN 248 (1189)
T ss_pred HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence 999999999999999976431 1111223345566653 4778899999999998887655
Q ss_pred CCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC---------cEEEEecCCCceeEEecCCCCCeeEEEecCCCCc
Q 042434 425 KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS---------QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPK 495 (517)
Q Consensus 425 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 495 (517)
...++..-.+ ..+.-..|+++|.+|++++.+. .|.+|. .-|+.+.+++.....|++++|-..| .
T Consensus 249 D~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~g-L 321 (1189)
T KOG2041|consen 249 DPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTG-L 321 (1189)
T ss_pred CCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCc-e
Confidence 5333333222 2245566799999999988652 566665 3478888999888999999998776 3
Q ss_pred EEEEeeCCCcEEE
Q 042434 496 MLASASDDHTIRI 508 (517)
Q Consensus 496 ~l~s~~~dg~v~i 508 (517)
.++. .-|+.|.+
T Consensus 322 riA~-Avdsfiyf 333 (1189)
T KOG2041|consen 322 RIAI-AVDSFIYF 333 (1189)
T ss_pred EEEE-EecceEEE
Confidence 3332 33445544
No 241
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=7.2e-13 Score=116.87 Aligned_cols=264 Identities=12% Similarity=0.116 Sum_probs=184.4
Q ss_pred ccCcEEEEEECCCC--CEEEEeeCCCcEEEEEecCCCeee---EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434 221 HKNEVWFVQFSNNG--EYLASSSSDCSAIIWKVLEDSKLT---LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD 295 (517)
Q Consensus 221 h~~~v~~~~~s~~~--~~l~t~~~dg~i~iw~~~~~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 295 (517)
-...|..++|..++ ..+...+.|..+....+....-.. ...+......+|..++.. +..|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 45567777776544 345555466666666654332111 112334456677777665 34788889999999999
Q ss_pred CCCCc----EEEEeCCCCCceEEEEEeCCCC-eEEEeeCCCceeEEEEeCCCCeeEeeeCcC----------CCceEEEE
Q 042434 296 VETGI----CKHTFGDHGFIVSSCAWFPDSK-RLVCGSSDTEKGIFMCDCDGNEIKAWRGTR----------IPKVLDLA 360 (517)
Q Consensus 296 ~~~~~----~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~----------~~~i~~~~ 360 (517)
.+.+. ....+ .....+..+.-++... .+++|+..+...+.+||+.+. .+.|.... .-.++++.
T Consensus 132 ~k~~d~hss~l~~l-a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKL-ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred ccCCccccccceee-ecCCceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccce
Confidence 87543 22222 2234556666666544 455588884444888888765 44444322 11467888
Q ss_pred EccC--CCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCc
Q 042434 361 VTPD--GENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGH 435 (517)
Q Consensus 361 ~~~~--~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 435 (517)
|.+. ...|++++.-+.+++||.+.+. ..+.....+++++...|+++.++++..-+.+..||++++......+.+.
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence 9888 8899999999999999998766 4444567899999999999999999999999999999885555557777
Q ss_pred ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCC
Q 042434 436 SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK 492 (517)
Q Consensus 436 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~ 492 (517)
.+....+.+ +|.+.++++++-|..++|+|+.+.+++.... -...++++.+.++
T Consensus 290 tGsirsih~---hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 290 TGSIRSIHC---HPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred cCCcceEEE---cCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 777555554 8899999999999999999999977765543 2345666666543
No 242
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=6.3e-13 Score=113.50 Aligned_cols=150 Identities=15% Similarity=0.266 Sum_probs=109.8
Q ss_pred EEEEECCCCCeEEEEeC----------CCeEEEEECCC-CcEEEEeC-CCCCceEEEEEeCCCCeEEEee--CCCceeEE
Q 042434 271 SFVAWSPDDTKLLTCGN----------AEVLKLWDVET-GICKHTFG-DHGFIVSSCAWFPDSKRLVCGS--SDTEKGIF 336 (517)
Q Consensus 271 ~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~-~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~--~d~~v~i~ 336 (517)
..+.|+|+|++|+.-.. -|...+|.++. +.....+. ...++|.+++|+|+|+.|++.. .++. +.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~--v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK--VT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc--cE
Confidence 46789999988765433 13455555522 23344443 2355799999999999887654 4454 88
Q ss_pred EEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC---CCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeC
Q 042434 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS---DKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLN 413 (517)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 413 (517)
+|+.++..+..+.. ..+..+.|+|+|+++++++. .|.|.+||.++.+.........++.++|+|+|+++++++.
T Consensus 87 lyd~~~~~i~~~~~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 87 LYDVKGKKIFSFGT---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred EEcCcccEeEeecC---CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 88888776666543 36788999999999999875 4679999999887555555566899999999999999874
Q ss_pred ------CCeEEEEEcCCC
Q 042434 414 ------SQEIHMWDVAGK 425 (517)
Q Consensus 414 ------d~~i~~~d~~~~ 425 (517)
|+.++||+..+.
T Consensus 164 ~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ccceeccccEEEEEecCe
Confidence 678899998653
No 243
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.57 E-value=4.7e-13 Score=116.00 Aligned_cols=279 Identities=19% Similarity=0.313 Sum_probs=183.2
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC--eeeEEEEeccCC------------CCEEEEEECCCC--CeEEE
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS--KLTLKHTLRSHQ------------NPVSFVAWSPDD--TKLLT 284 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~h~------------~~v~~l~~s~~~--~~l~s 284 (517)
..+-|.++.|...|.+||||..+|.|.++.-.... .......++.|. ..|..+.|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45678999999999999999999999999654322 233455566664 467889999865 45666
Q ss_pred EeCCCeEEEEECCCCcEEE-Ee----CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEE
Q 042434 285 CGNAEVLKLWDVETGICKH-TF----GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDL 359 (517)
Q Consensus 285 ~~~dg~i~iwd~~~~~~~~-~~----~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~ 359 (517)
.+.|.+|++|.+....... .+ +.....++++.. .+.+..+-. . ...+.+.+...|.-.|.++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~------p~~~~~~~~---v----ea~prRv~aNaHtyhiNSI 170 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL------PVEGRHDLE---V----EASPRRVYANAHTYHINSI 170 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeec------eeeccccce---e----eeeeeeeccccceeEeeee
Confidence 7889999999986543222 00 111222222221 111111111 0 1123344455555579999
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCce----EEee-cc-----CCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCC---
Q 042434 360 AVTPDGENLISVLSDKDIRILNLGTYA----ERVI-SE-----EHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGK--- 425 (517)
Q Consensus 360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~-~~-----~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~--- 425 (517)
.++.|+..++++ .|=.|.+|++.-.. ..-+ ++ ..-|++..|+|. ...++.++..|+|++.|++..
T Consensus 171 S~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLC 249 (433)
T KOG1354|consen 171 SVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALC 249 (433)
T ss_pred eecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhh
Confidence 999999988876 56678999886433 1111 11 225788999995 567888889999999999842
Q ss_pred --CccceEEe-------CcccCceEEEeecCCCCCcEEEEecCCCcEEEEec-CCCceeEEecCCCC------------C
Q 042434 426 --WEKPFKYT-------GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR-RNSKPIEILSGHSM------------T 483 (517)
Q Consensus 426 --~~~~~~~~-------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~h~~------------~ 483 (517)
.......+ ........|.-+.|+++|+|+++-+. -+|++||+ ...+++.+++-|.. .
T Consensus 250 d~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 250 DAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred cchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 11111111 11122334566677999999998653 58999999 45678888776642 2
Q ss_pred e---eEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 484 V---NCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 484 v---~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
| ..++|+.++ ..++|||....+++++...|.
T Consensus 329 IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 329 IFDKFECSWSGND-SYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hhheeEEEEcCCc-ceEecccccceEEEecCCCCc
Confidence 2 457899888 699999999999999976654
No 244
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=5.2e-13 Score=114.00 Aligned_cols=157 Identities=16% Similarity=0.263 Sum_probs=114.1
Q ss_pred EEEEEeCCCCeEEEeeC----------CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE--eCCCcEEEE
Q 042434 313 SSCAWFPDSKRLVCGSS----------DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV--LSDKDIRIL 380 (517)
Q Consensus 313 ~~i~~~~~~~~l~~~~~----------d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~ 380 (517)
..+.|+|+|.+|++-.. -+...++.++..+.....+.....++|.+++|+|+|+.+++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45789999987766433 123457777777777766666555679999999999987654 456799999
Q ss_pred ECCCceEEeeccCCCeeEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434 381 NLGTYAERVISEEHPITSLSVSVDCKNFIVNLN---SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG 457 (517)
Q Consensus 381 d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 457 (517)
|++...... .....+..+.|+|+|+++++++. .|.+.+||.++. ..+.... |. .+..+.|+|||++++++
T Consensus 89 d~~~~~i~~-~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~~-~~----~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 89 DVKGKKIFS-FGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-KKISTFE-HS----DATDVEWSPDGRYLATA 161 (194)
T ss_pred cCcccEeEe-ecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-EEeeccc-cC----cEEEEEEcCCCCEEEEE
Confidence 997443333 34567889999999999999874 467999999854 3333332 21 24567789999999998
Q ss_pred cC------CCcEEEEecCCCceeEEe
Q 042434 458 SE------NSQIYIWNRRNSKPIEIL 477 (517)
Q Consensus 458 ~~------dg~i~iwd~~~~~~~~~~ 477 (517)
+. |+.++||+.. |+.+...
T Consensus 162 ~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EeccceeccccEEEEEec-CeEeEec
Confidence 74 6789999984 7766554
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.56 E-value=2.1e-12 Score=126.36 Aligned_cols=207 Identities=18% Similarity=0.225 Sum_probs=147.2
Q ss_pred CcccEEEeccccCcEEEEEECCCCCEEEEeeCC---CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEE-Ee
Q 042434 211 PTETVQILTEHKNEVWFVQFSNNGEYLASSSSD---CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLT-CG 286 (517)
Q Consensus 211 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~ 286 (517)
.+...+.+..+...+.+.+|+|||++|+.++.+ ..|++|++.++... .+..+.+.+.+++|+|||+.|+. .+
T Consensus 178 ~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~l~~~~~ 253 (417)
T TIGR02800 178 DGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSKLAVSLS 253 (417)
T ss_pred CCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCEEEEEEC
Confidence 345556677788889999999999999987654 47999999765331 23335566778999999987764 44
Q ss_pred CCC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc
Q 042434 287 NAE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP 363 (517)
Q Consensus 287 ~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 363 (517)
.++ .|.+||+.++... .+..+........|+|||+.|+.++. ++...||.++..+.....+.... .......|+|
T Consensus 254 ~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~-~~~~~~~~sp 331 (417)
T TIGR02800 254 KDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG-GYNASPSWSP 331 (417)
T ss_pred CCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccCeEECC
Confidence 444 5889999887654 34344445567789999998876654 45556999998876655444332 3567789999
Q ss_pred CCCEEEEEeCCC---cEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCC---eEEEEEcC
Q 042434 364 DGENLISVLSDK---DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQ---EIHMWDVA 423 (517)
Q Consensus 364 ~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~---~i~~~d~~ 423 (517)
+|++++.++.++ .|.+||+.+................|+|+++.++..+.++ .+.+.+..
T Consensus 332 dg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 332 DGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 999999888776 7999999886644444333455678999999988877654 34455543
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=4.1e-12 Score=124.46 Aligned_cols=208 Identities=15% Similarity=0.199 Sum_probs=144.4
Q ss_pred CcccEEEeccccCcEEEEEECCCCCEEEEeeCC---CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEE-Ee
Q 042434 211 PTETVQILTEHKNEVWFVQFSNNGEYLASSSSD---CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLT-CG 286 (517)
Q Consensus 211 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~ 286 (517)
.+...+.+..+...+...+|||||+.|+..+.+ ..|.+|++.++.. . .+....+.+...+|+|||+.|+. .+
T Consensus 187 ~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~---~l~~~~g~~~~~~~SpDG~~la~~~~ 262 (430)
T PRK00178 187 DGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-E---QITNFEGLNGAPAWSPDGSKLAFVLS 262 (430)
T ss_pred CCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-E---EccCCCCCcCCeEECCCCCEEEEEEc
Confidence 344556676788899999999999999877643 3588889876543 2 22233445567899999998874 44
Q ss_pred CCC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc
Q 042434 287 NAE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP 363 (517)
Q Consensus 287 ~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 363 (517)
.+| .|.+||+.+++.. .+..+........|+|||+.++..+. ++...++.++..+.....+.... .......|+|
T Consensus 263 ~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Sp 340 (430)
T PRK00178 263 KDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-NYNARPRLSA 340 (430)
T ss_pred cCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccceEECC
Confidence 455 6888899888654 34455555677899999998876654 55667999998766554443222 2344578999
Q ss_pred CCCEEEEEeCCC---cEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCC---CeEEEEEcCC
Q 042434 364 DGENLISVLSDK---DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS---QEIHMWDVAG 424 (517)
Q Consensus 364 ~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~~~d~~~ 424 (517)
+|+.++..+.++ .|.++|+.++...............|+|+|+.++..+.+ ..+.++++.+
T Consensus 341 dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 341 DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 999988776533 588899988774444433344467899999999887654 2466777654
No 247
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=2.2e-11 Score=104.82 Aligned_cols=270 Identities=11% Similarity=0.137 Sum_probs=172.6
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCC--EEEEEECCCCCeEE-EEeCC------CeEEEE
Q 042434 224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNP--VSFVAWSPDDTKLL-TCGNA------EVLKLW 294 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~--v~~l~~s~~~~~l~-s~~~d------g~i~iw 294 (517)
....++|+.|..-++.|..+| .+||+.+. +........+.+. +.-+-| ..++++ +||.+ ..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P---~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDP---FKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCc---hhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 344599999999999988776 79999853 2221111222222 222222 234554 34333 379999
Q ss_pred ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCC-CceEEEEEccCCCEEEE-
Q 042434 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRI-PKVLDLAVTPDGENLIS- 370 (517)
Q Consensus 295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~-~~i~~~~~~~~~~~l~~- 370 (517)
|=...+++.++ ....+|.++.+.++ .|++.-.. . |++|.-.. +.+..+..... ....+++-+.+...|+.
T Consensus 81 DD~k~~~i~el-~f~~~I~~V~l~r~--riVvvl~~-~--I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 81 DDLKERCIIEL-SFNSEIKAVKLRRD--RIVVVLEN-K--IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ecccCcEEEEE-EeccceeeEEEcCC--eEEEEecC-e--EEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 96667777777 56788999999865 56655444 3 66666542 33333332221 12333333333334443
Q ss_pred EeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeCCCe-EEEEEcCCCCccceEEeCcccCceEEEee
Q 042434 371 VLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLNSQE-IHMWDVAGKWEKPFKYTGHSQNKYVIRSC 445 (517)
Q Consensus 371 ~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 445 (517)
|-.-|.|.|-|+...+ .....|...|.+++++.+|..+++++..|+ |++||..++ ..+..+..-.. ...+.++
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g-~~l~E~RRG~d-~A~iy~i 232 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG-TLLQELRRGVD-RADIYCI 232 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC-cEeeeeecCCc-hheEEEE
Confidence 3456899999997654 466789999999999999999999999996 799999888 45554442222 2346778
Q ss_pred cCCCCCcEEEEecCCCcEEEEecCCCceeE------------------------EecCCCCCeeEEEecCCCCcEEEEee
Q 042434 446 FGGLDGTFIASGSENSQIYIWNRRNSKPIE------------------------ILSGHSMTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 446 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~------------------------~~~~h~~~v~~v~~~~~~~~~l~s~~ 501 (517)
.|||++.+|+++|+.|++.||.++....-. .+.-..+...-++|..+. +.++..+
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~-nsvi~i~ 311 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSET-NTVIAIC 311 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCC-CeEEEEE
Confidence 889999999999999999999876432111 111123455566776664 3566666
Q ss_pred CCCcEEE
Q 042434 502 DDHTIRI 508 (517)
Q Consensus 502 ~dg~v~i 508 (517)
.||+-+=
T Consensus 312 ~Dgsy~k 318 (346)
T KOG2111|consen 312 ADGSYYK 318 (346)
T ss_pred eCCcEEE
Confidence 7776553
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4.5e-12 Score=123.57 Aligned_cols=207 Identities=20% Similarity=0.219 Sum_probs=138.8
Q ss_pred cccEEEeccccCcEEEEEECCCCCEEEEeeC-CC--cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEE-EeC
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYLASSSS-DC--SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLT-CGN 287 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~ 287 (517)
+...+.+..+...+.+..|||||+.|+..+. ++ .|.+||+.++.. ..+..+ .+.....+|+|||+.|+. .+.
T Consensus 207 G~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~---~g~~~~~~wSPDG~~La~~~~~ 282 (448)
T PRK04792 207 GYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSF---PGINGAPRFSPDGKKLALVLSK 282 (448)
T ss_pred CCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecCC---CCCcCCeeECCCCCEEEEEEeC
Confidence 3444556667788899999999999987654 33 577888865532 222222 333457899999998875 455
Q ss_pred CC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccC
Q 042434 288 AE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD 364 (517)
Q Consensus 288 dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 364 (517)
+| .|.++|+.+++.. .+..+.......+|+|||+.++..+. ++...+|.++..+.....+.... .......|+||
T Consensus 283 ~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpD 360 (448)
T PRK04792 283 DGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG-EQNLGGSITPD 360 (448)
T ss_pred CCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC-CCCcCeeECCC
Confidence 66 4888898887654 44455556678899999998876654 56667999998866555443221 12345689999
Q ss_pred CCEEEEEeCC-C--cEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCC---eEEEEEcCC
Q 042434 365 GENLISVLSD-K--DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQ---EIHMWDVAG 424 (517)
Q Consensus 365 ~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~---~i~~~d~~~ 424 (517)
|+.++..+.+ + .|.++|+.++...............|+|+|+.++..+.++ .+++++..+
T Consensus 361 G~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred CCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 9988776553 3 4666788777643333222334568999999988766543 366777654
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.1e-12 Score=119.34 Aligned_cols=244 Identities=18% Similarity=0.237 Sum_probs=166.6
Q ss_pred cCCCCEEEEEECCCCCeEE-EEeCCCeEEEEECCCCcEEEEeCCC--CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC
Q 042434 265 SHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVETGICKHTFGDH--GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341 (517)
Q Consensus 265 ~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~ 341 (517)
.|...-+.|..+|||+|++ +|.+.-.|++||+.+-... |..| ...|.-.-.+.|-...+.-..|.+ |-+....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~--IefHak~ 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRT--IEFHAKY 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCce--eeehhhc
Confidence 4677889999999999875 5666779999999765443 3333 344444455555555555556665 2222222
Q ss_pred CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 042434 342 GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHM 419 (517)
Q Consensus 342 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~ 419 (517)
|. -.....+. .-.+++++.-.--+++++....|+-+++..+. .........++++.+++....+++|+.+|.|.+
T Consensus 125 G~-hy~~RIP~--~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 125 GR-HYRTRIPK--FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEF 201 (703)
T ss_pred Ce-eeeeecCc--CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEE
Confidence 21 11111111 34566776555556677777789999999887 334445578999999999999999999999999
Q ss_pred EEcCCCCccceEEeCc------cc--CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-CCCCCeeEEEec
Q 042434 420 WDVAGKWEKPFKYTGH------SQ--NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-GHSMTVNCVSWN 490 (517)
Q Consensus 420 ~d~~~~~~~~~~~~~~------~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~ 490 (517)
||.+.. ..+..+... .. ....++++.|+.+|-.+++|+.+|.++|||+++.+++..-. +..-+|..+.|.
T Consensus 202 wDpR~k-srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~ 280 (703)
T KOG2321|consen 202 WDPRDK-SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ 280 (703)
T ss_pred ecchhh-hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence 999876 333333211 11 12336677778889999999999999999999998876543 235688999998
Q ss_pred CCCC-cEEEEeeCCCcEEEeCCCCCCCC
Q 042434 491 PKRP-KMLASASDDHTIRIWGPCQSSEV 517 (517)
Q Consensus 491 ~~~~-~~l~s~~~dg~v~iw~~~~~~~v 517 (517)
+.+. ..++| .+...++|||-.+|+.+
T Consensus 281 ~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~ 307 (703)
T KOG2321|consen 281 DTDQQNKVVS-MDKRILKIWDECTGKPM 307 (703)
T ss_pred ccCCCceEEe-cchHHhhhcccccCCce
Confidence 7632 23444 34568999999998863
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.4e-10 Score=102.18 Aligned_cols=270 Identities=12% Similarity=0.112 Sum_probs=175.0
Q ss_pred CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---CeEEEEECCC--CcEEE--EeCCCCCceEEE
Q 042434 243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---EVLKLWDVET--GICKH--TFGDHGFIVSSC 315 (517)
Q Consensus 243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~--~~~~~--~~~~~~~~v~~i 315 (517)
+.-|++|++.+.........+-.+.+.++-++|+|+++.|.++..+ |.|..|.++. |+... .......+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4569999997433222222334567888999999999999888554 6777777654 54332 222334445889
Q ss_pred EEeCCCCeEEEeeCC-CceeEEEEeCCCCee---EeeeC--------cCCCceEEEEEccCCCEEEEEeC-CCcEEEEEC
Q 042434 316 AWFPDSKRLVCGSSD-TEKGIFMCDCDGNEI---KAWRG--------TRIPKVLDLAVTPDGENLISVLS-DKDIRILNL 382 (517)
Q Consensus 316 ~~~~~~~~l~~~~~d-~~v~i~~~~~~~~~~---~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~ 382 (517)
++++++++++++... |.+.++-....|... ..... ...+.+....+.|+++++++.+- ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 999999999988764 565555444443221 11110 01123888999999999888764 347999999
Q ss_pred CCce-----EEeeccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCccceEEeCc------ccCceEEEeecCCCC
Q 042434 383 GTYA-----ERVISEEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGKWEKPFKYTGH------SQNKYVIRSCFGGLD 450 (517)
Q Consensus 383 ~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~------~~~~~~i~~~~~s~~ 450 (517)
..+. ......+.....+.|+|++++..+.+. +++|.+|...........+..+ -........+..++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 8765 233356667899999999999887766 8999999987642222222211 111222344455899
Q ss_pred CcEEEEecCC-CcEEEEecCC--Cce--eEEecCCCCCeeEEEecCCCCcEEEEee-CCCcEEEeCCCC
Q 042434 451 GTFIASGSEN-SQIYIWNRRN--SKP--IEILSGHSMTVNCVSWNPKRPKMLASAS-DDHTIRIWGPCQ 513 (517)
Q Consensus 451 ~~~l~~~~~d-g~i~iwd~~~--~~~--~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~v~iw~~~~ 513 (517)
|++|+++... ..|.+|.+.. +++ +.....+....++..++|++ .+|+++. ++..|.+|..+.
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcC
Confidence 9999987643 3677776653 332 22333455567899999999 4555555 455788887654
No 251
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=1e-12 Score=120.53 Aligned_cols=190 Identities=17% Similarity=0.212 Sum_probs=126.3
Q ss_pred CCCCEEEEeeCCCcEEEEEecCCCeeeEE--EEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCCCcEEEEeCCC
Q 042434 232 NNGEYLASSSSDCSAIIWKVLEDSKLTLK--HTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVETGICKHTFGDH 308 (517)
Q Consensus 232 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~--~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 308 (517)
|.+--|..|-.-|.|.+.|.... .+..+ ....-....|+|+.|-|.+ ..++++-.+|.+.+||...- .+.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~------~~~ 255 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV------CGA 255 (636)
T ss_pred CCCcceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc------ccC
Confidence 45666777777888988886431 11100 0011124789999999854 55666678999999986210 011
Q ss_pred CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--
Q 042434 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-- 386 (517)
Q Consensus 309 ~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-- 386 (517)
.. .+-...+++..+......+. ...+++..|.... +.|..++|+|||++|++.+.||.++|||..+.+
T Consensus 256 t~--p~~~~~k~~~~f~i~t~ksk-------~~rNPv~~w~~~~-g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 256 TA--PSYQALKDGDQFAILTSKSK-------KTRNPVARWHIGE-GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL 325 (636)
T ss_pred CC--CcccccCCCCeeEEeeeecc-------ccCCccceeEecc-ccccceeEcCCCceEEEEecCceEEEeeccHHHHH
Confidence 11 11122345555554432221 1124444454444 379999999999999999999999999998876
Q ss_pred EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCc
Q 042434 387 ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNK 439 (517)
Q Consensus 387 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 439 (517)
......-+...|++|+|||+++++|+.|.-|.+|.+... +.+..-.+|...+
T Consensus 326 g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWV 377 (636)
T KOG2394|consen 326 GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWV 377 (636)
T ss_pred HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccce
Confidence 333344567899999999999999999999999999766 5555555665543
No 252
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=3.1e-10 Score=100.09 Aligned_cols=272 Identities=14% Similarity=0.165 Sum_probs=178.8
Q ss_pred eccccCcEEEEEECCCCCEEEEeeC---CCcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-CCeEE
Q 042434 218 LTEHKNEVWFVQFSNNGEYLASSSS---DCSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-AEVLK 292 (517)
Q Consensus 218 l~~h~~~v~~~~~s~~~~~l~t~~~---dg~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~ 292 (517)
+-.+.+.++-++|+|+++.|.++-. +|.|.-|.++.. ..+..+........+-+.++++++|++++++.. .|.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 3457788999999999999988754 577888888743 455555544444455589999999999999876 46899
Q ss_pred EEECCC-CcEEEE--eCCCCCc----------eEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEee---eCcCCCce
Q 042434 293 LWDVET-GICKHT--FGDHGFI----------VSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAW---RGTRIPKV 356 (517)
Q Consensus 293 iwd~~~-~~~~~~--~~~~~~~----------v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~---~~~~~~~i 356 (517)
++-+.. |..... ...|.+. +.+..+.|+++++++.+-. .-+|+.|+.....+... ........
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-~Dri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-TDRIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-CceEEEEEcccCccccccccccCCCCCc
Confidence 999855 433221 1133333 7888999999998887542 23377777764333221 22333467
Q ss_pred EEEEEccCCCEEEEEe-CCCcEEEEECCCc--eEE----------eeccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEc
Q 042434 357 LDLAVTPDGENLISVL-SDKDIRILNLGTY--AER----------VISEEHPITSLSVSVDCKNFIVNLN-SQEIHMWDV 422 (517)
Q Consensus 357 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~--~~~----------~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~ 422 (517)
+.|.|+|++++..+.. -+++|.+|..... +.. .+........+.+++||++|.++.. ...|.+|.+
T Consensus 194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 8899999999877665 4889999988763 211 1223456788999999999998866 347888887
Q ss_pred CCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC-cEEEEec--CCCceeEEec-CCCCCeeEEEec
Q 042434 423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS-QIYIWNR--RNSKPIEILS-GHSMTVNCVSWN 490 (517)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~--~~~~~~~~~~-~h~~~v~~v~~~ 490 (517)
....................+...++++|++|++++.++ .|.+|.+ .+|++-.... .......||.|.
T Consensus 274 ~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 274 DPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred cCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 544232222222222222234444588999999988775 6777755 4555443332 233445566654
No 253
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.49 E-value=2.1e-11 Score=111.45 Aligned_cols=287 Identities=16% Similarity=0.293 Sum_probs=179.6
Q ss_pred CCCcccEEEe-ccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC
Q 042434 209 QIPTETVQIL-TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN 287 (517)
Q Consensus 209 ~~~~~~~~~l-~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 287 (517)
..+....... ....-++..++|||.|.+|++.... .|.+|.-.... .+..+. ...|..+.|+|.+++|.+=+.
T Consensus 18 ~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~---~l~~~~--~~~V~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 18 NSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKA---KLVRFR--HPDVKYLDFSPNEKYLVTWSR 91 (561)
T ss_pred cCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchh---heeeee--cCCceecccCcccceeeeecc
Confidence 3333333333 3367789999999999999998765 48999875443 222222 356999999999999998654
Q ss_pred CC---------------eEEEEECCCCcEEEEeCCCCCc--eE-EEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEee
Q 042434 288 AE---------------VLKLWDVETGICKHTFGDHGFI--VS-SCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAW 348 (517)
Q Consensus 288 dg---------------~i~iwd~~~~~~~~~~~~~~~~--v~-~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~ 348 (517)
.+ .+.+||+.+|..+..+.....+ .+ -+.|+-+.++.+--..+. +++++...+ ....+
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~s---l~i~e~t~n~~~~p~ 168 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSS---LYIHEITDNIEEHPF 168 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCe---EEEEecCCccccCch
Confidence 43 4999999999999888765544 44 567777666544332221 333332100 00000
Q ss_pred eCcCCCceE-------------------------------------------------EEEEccCCCEEEEEeC------
Q 042434 349 RGTRIPKVL-------------------------------------------------DLAVTPDGENLISVLS------ 373 (517)
Q Consensus 349 ~~~~~~~i~-------------------------------------------------~~~~~~~~~~l~~~~~------ 373 (517)
.......+. .+.|.+.|+++++-..
T Consensus 169 ~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 169 KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecc
Confidence 000001122 3455556664432211
Q ss_pred -----CCcEEEEECCCceEEee-ccCCCeeEEEEcCCCCEEEEEe--CCCeEEEEEcCCCCccceEEeCcccCceEEEee
Q 042434 374 -----DKDIRILNLGTYAERVI-SEEHPITSLSVSVDCKNFIVNL--NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSC 445 (517)
Q Consensus 374 -----dg~i~i~d~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 445 (517)
...++++++........ ...++|..++|.|.++.+++.+ .+..+.++|+++. ....+ ..+. -...
T Consensus 249 KsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~--Pe~~---rNT~ 321 (561)
T COG5354 249 KSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYF--PEQK---RNTI 321 (561)
T ss_pred cceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEec--CCcc---cccc
Confidence 23466666665443222 5578899999999988877665 5778999999874 22222 2222 2234
Q ss_pred cCCCCCcEEEEecCC---CcEEEEecCCCceeE-EecCCCCCeeEEEecCCCCcEEEEee------CCCcEEEeCCCCC
Q 042434 446 FGGLDGTFIASGSEN---SQIYIWNRRNSKPIE-ILSGHSMTVNCVSWNPKRPKMLASAS------DDHTIRIWGPCQS 514 (517)
Q Consensus 446 ~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~------~dg~v~iw~~~~~ 514 (517)
.|+|.+++++.++.| |.|-+||......+. .+.+. ...-+.|+|++ .++.+.. .|..|.||++...
T Consensus 322 ~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~-qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 322 FFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDG-QFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred cccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCc-eEEEecCCCcccccCcceEEEEecCc
Confidence 569999999998776 689999987654443 55543 34556899999 5655543 3788999998754
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=3.6e-11 Score=116.33 Aligned_cols=209 Identities=16% Similarity=0.151 Sum_probs=135.7
Q ss_pred cccEEEeccccCcEEEEEECCCCCEE---EEeeCCC--cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYL---ASSSSDC--SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG 286 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l---~t~~~dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 286 (517)
+...+.+......+.+-+|||||+.+ ++...+| .|.+.++.++.. ..+.. ..+.....+|+|||+.|+..+
T Consensus 174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt~---~~g~~~~p~wSPDG~~Laf~s 249 (428)
T PRK01029 174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKILA---LQGNQLMPTFSPRKKLLAFIS 249 (428)
T ss_pred CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEeec---CCCCccceEECCCCCEEEEEE
Confidence 34445566566777888999999752 2343444 466667765533 22222 344556789999999888655
Q ss_pred C-CC----eEEEEECCCC---cEEEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCC--CCeeEeeeCcCCCc
Q 042434 287 N-AE----VLKLWDVETG---ICKHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCD--GNEIKAWRGTRIPK 355 (517)
Q Consensus 287 ~-dg----~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~--~~~~~~~~~~~~~~ 355 (517)
. +| .+.+|++.++ +...............+|+|||+.|+..+ .+|...+|.++.. +.....+.... ..
T Consensus 250 ~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~-~~ 328 (428)
T PRK01029 250 DRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY-RN 328 (428)
T ss_pred CCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC-CC
Confidence 3 22 3455777653 33333323333456789999999887765 4676678888764 23333333322 35
Q ss_pred eEEEEEccCCCEEEEEeCC---CcEEEEECCCceEEeec-cCCCeeEEEEcCCCCEEEEEeC---CCeEEEEEcCCC
Q 042434 356 VLDLAVTPDGENLISVLSD---KDIRILNLGTYAERVIS-EEHPITSLSVSVDCKNFIVNLN---SQEIHMWDVAGK 425 (517)
Q Consensus 356 i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~ 425 (517)
+....|+|||+.++..+.+ ..|.+||+.+++..... ....+....|+|||+.++.... ...|+++|+.++
T Consensus 329 ~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 6788999999988876543 36999999888743333 3346778999999998876543 346888888765
No 255
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=2e-11 Score=120.91 Aligned_cols=150 Identities=19% Similarity=0.303 Sum_probs=130.7
Q ss_pred EEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEE-EeC
Q 042434 228 VQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH-TFG 306 (517)
Q Consensus 228 ~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~ 306 (517)
+.++++.-++++|+.-+.|.+|+....+. ...+.+|.+.|.++.|+.||.++++.|.|.++++|++++++... ..-
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~---p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f 215 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNK---PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF 215 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCC---cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc
Confidence 34577778999999999999999973322 12688999999999999999999999999999999999988765 444
Q ss_pred CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 042434 307 DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT 384 (517)
Q Consensus 307 ~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 384 (517)
+|...|+.+.|.|+ .+++++.|.+ ...|+..+..+..+..+....+..++..++....++++.|+.+++||+..
T Consensus 216 gHsaRvw~~~~~~n--~i~t~gedct--crvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 216 GHSARVWACCFLPN--RIITVGEDCT--CRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cccceeEEEEeccc--eeEEeccceE--EEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 89999999999998 9999999999 67777777777788888878899999999999999999999999999754
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.1e-10 Score=113.00 Aligned_cols=238 Identities=15% Similarity=0.117 Sum_probs=145.0
Q ss_pred cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE---EEEeCCC--eEEEEECCCCcEEEEeCCCCCceEEEEEeC
Q 042434 245 SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL---LTCGNAE--VLKLWDVETGICKHTFGDHGFIVSSCAWFP 319 (517)
Q Consensus 245 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l---~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 319 (517)
.|.+.|.+.++. ..+......+.+-+|+|||+.+ ++...+| .|.+.++.+|+..... ...+.....+|+|
T Consensus 166 ~l~~~d~dG~~~----~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSP 240 (428)
T PRK01029 166 ELWSVDYDGQNL----RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSP 240 (428)
T ss_pred eEEEEcCCCCCc----eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECC
Confidence 455666543322 2344455667788999999753 2333343 6888898887654333 3444556789999
Q ss_pred CCCeEEEeeC-CCceeEEE--EeCCC---CeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCc--EEEEECCC--ce-E
Q 042434 320 DSKRLVCGSS-DTEKGIFM--CDCDG---NEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKD--IRILNLGT--YA-E 387 (517)
Q Consensus 320 ~~~~l~~~~~-d~~v~i~~--~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~--~~-~ 387 (517)
||+.|+..+. +|...++. |+..+ .....+.....+.....+|+|||+.|+..+ .+|. |+++++.. .. .
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence 9998887653 34322444 55542 222333322222345689999999877665 4564 44445532 22 2
Q ss_pred EeeccCCCeeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC---CC
Q 042434 388 RVISEEHPITSLSVSVDCKNFIVNLNS---QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE---NS 461 (517)
Q Consensus 388 ~~~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg 461 (517)
........+....|+|||+.++..+.+ ..|.+||+.++.. ..+...... .....|+|||+.|+..+. .+
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~--~~Lt~~~~~---~~~p~wSpDG~~L~f~~~~~g~~ 395 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD--YQLTTSPEN---KESPSWAIDSLHLVYSAGNSNES 395 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe--EEccCCCCC---ccceEECCCCCEEEEEECCCCCc
Confidence 233344566789999999998877653 3699999977622 222222111 233456899998875433 35
Q ss_pred cEEEEecCCCceeEEecCCCCCeeEEEecCCC
Q 042434 462 QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR 493 (517)
Q Consensus 462 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~ 493 (517)
.|+++|+.+++...... ..+.+...+|+|-.
T Consensus 396 ~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 396 ELYLISLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred eEEEEECCCCCEEEeec-CCCcccCceecCCC
Confidence 79999998776544443 45667788998854
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.43 E-value=2.1e-09 Score=98.93 Aligned_cols=260 Identities=11% Similarity=0.032 Sum_probs=156.7
Q ss_pred CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC----------CCeEEEEECCCCcEEEEeCCCC----
Q 042434 244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN----------AEVLKLWDVETGICKHTFGDHG---- 309 (517)
Q Consensus 244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~---- 309 (517)
++|.+.|..+. +.+.++.....+- .+ ++||++.++++.. +..|.+||..+.+.+..+....
T Consensus 27 ~~v~ViD~~~~---~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAG---RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCC---EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 88999998665 4444444333332 24 9999998887755 6799999999999998886322
Q ss_pred ---CceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCC-
Q 042434 310 ---FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT- 384 (517)
Q Consensus 310 ---~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~- 384 (517)
.....++++|||+++++...+..-.+-++|.....+. ...... ...-...+++... +-+.||......+.+
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~--~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD--CYHIFPTANDTFF--MHCRDGSLAKVGYGTK 177 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC--CcEEEEecCCccE--EEeecCceEEEEecCC
Confidence 2334789999999999877553333888888865543 333222 1111112111111 112333333322211
Q ss_pred ce-----EEeecc-CCCe-eEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccc----eEEeCc------ccCceEEEeec
Q 042434 385 YA-----ERVISE-EHPI-TSLSVSV-DCKNFIVNLNSQEIHMWDVAGKWEKP----FKYTGH------SQNKYVIRSCF 446 (517)
Q Consensus 385 ~~-----~~~~~~-~~~i-~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~----~~~~~~------~~~~~~i~~~~ 446 (517)
++ ...+.. ..++ ..-.+.+ +|+++.+... |.|.+.|+.+..... ..+... .... +..+.
T Consensus 178 g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g--~q~ia 254 (352)
T TIGR02658 178 GNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG--WQQVA 254 (352)
T ss_pred CceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCc--ceeEE
Confidence 11 111111 0000 0013455 7888877777 999999975431111 111100 1111 12255
Q ss_pred CCCCCcEEEEec----------CCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCC-cEEEEeeCCCcEEEeCCCCCC
Q 042434 447 GGLDGTFIASGS----------ENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRP-KMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 447 ~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~l~s~~~dg~v~iw~~~~~~ 515 (517)
++++++.+++.. ..+.|.++|..+++.+..+.. ...+..++++||+. .++++...++.|.+.|..+++
T Consensus 255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 588988888743 224799999999999998874 45889999999995 444455578999999999886
Q ss_pred C
Q 042434 516 E 516 (517)
Q Consensus 516 ~ 516 (517)
.
T Consensus 334 ~ 334 (352)
T TIGR02658 334 E 334 (352)
T ss_pred E
Confidence 4
No 258
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.41 E-value=6.8e-10 Score=100.80 Aligned_cols=174 Identities=16% Similarity=0.198 Sum_probs=140.2
Q ss_pred ECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC-eEEEEECCCCcEEEEeCC
Q 042434 230 FSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE-VLKLWDVETGICKHTFGD 307 (517)
Q Consensus 230 ~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~ 307 (517)
|++ +|.+++..|. |...|.+...+-. .--+|.+.|.-..+..+++-++.|..|| .+-|+|..+++.. .+..
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~-----iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~ 399 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYS-----IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEK 399 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCee-----EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeC
Confidence 455 7888888876 6777766543321 1235778899999999999999999999 9999999887654 4556
Q ss_pred CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC----cEEEEECC
Q 042434 308 HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK----DIRILNLG 383 (517)
Q Consensus 308 ~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~ 383 (517)
.-+.|.++..+++|+.++++..... +|++|.++...+.......+-|+.+.|+|++++++-+--+| .|+++|+.
T Consensus 400 ~lg~I~av~vs~dGK~~vvaNdr~e--l~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 400 DLGNIEAVKVSPDGKKVVVANDRFE--LWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred CccceEEEEEcCCCcEEEEEcCceE--EEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 6778999999999999999988887 99999999888888888888999999999999999887766 68999999
Q ss_pred Cce-EEeeccCCCeeEEEEcCCCCEEEEEe
Q 042434 384 TYA-ERVISEEHPITSLSVSVDCKNFIVNL 412 (517)
Q Consensus 384 ~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~ 412 (517)
+++ .........-.+-+|.|++++|..-+
T Consensus 478 ~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 478 GGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 987 44444555566788999999876544
No 259
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.41 E-value=1.5e-10 Score=105.94 Aligned_cols=274 Identities=15% Similarity=0.210 Sum_probs=192.0
Q ss_pred CCcccccCCCcccEEEeccccCc--EE-EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC
Q 042434 202 DHCCGRDQIPTETVQILTEHKNE--VW-FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD 278 (517)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~h~~~--v~-~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 278 (517)
++.+.|+...+..+..+.+-..+ .+ -+.|+.+.+|+|--. ...++|+++...-...+.+.+. ...|....|+|.
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~ 184 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPE 184 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCccccCchhhcc--ccceeeEEecCC
Confidence 36677888888888888887777 77 788999988887653 3479999972211111222222 366888899996
Q ss_pred C--CeEEE-----EeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC---------CCceeEEEEeCCC
Q 042434 279 D--TKLLT-----CGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS---------DTEKGIFMCDCDG 342 (517)
Q Consensus 279 ~--~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---------d~~v~i~~~~~~~ 342 (517)
+ ..|+. .+.++.+++|.+..+..+.+-.-....-..+.|.+.|+++++-.. =|.-.+++++..+
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 4 33443 466789999999877776654444444467889999988765311 1112377777776
Q ss_pred CeeEeeeCcCCCceEEEEEccCCCEEEEEe--CCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCC---CeE
Q 042434 343 NEIKAWRGTRIPKVLDLAVTPDGENLISVL--SDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS---QEI 417 (517)
Q Consensus 343 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---~~i 417 (517)
..+.... ...++|...+|.|.++.+++.+ .+..+.++|++.. .........-..+.|+|.++++++++-+ |.+
T Consensus 265 ~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni 342 (561)
T COG5354 265 RSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNI 342 (561)
T ss_pred cccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEEEEecCCccccce
Confidence 6665554 3346899999999998766554 6788999999887 5555666677888999999999987654 689
Q ss_pred EEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec------CCCcEEEEecCCCceeEEecCCCCCeeEEEecC
Q 042434 418 HMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS------ENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 491 (517)
Q Consensus 418 ~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~ 491 (517)
.+||..+.......+.+.. .+.|-|+||+.++.+.. .|..|.+||+.... +. ..+.+.|.|
T Consensus 343 ~i~~~~~rf~~~~~~~~~n-----~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~-~f-------el~~~~W~p 409 (561)
T COG5354 343 EIFDPAGRFKVAGAFNGLN-----TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK-VF-------ELTNITWDP 409 (561)
T ss_pred EEeccCCceEEEEEeecCC-----ceEeeccCCceEEEecCCCcccccCcceEEEEecCch-hh-------hhhhccccC
Confidence 9999988755555665544 44667799999998765 36789999986433 22 345566666
Q ss_pred CC
Q 042434 492 KR 493 (517)
Q Consensus 492 ~~ 493 (517)
.+
T Consensus 410 ~~ 411 (561)
T COG5354 410 SG 411 (561)
T ss_pred Cc
Confidence 66
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.40 E-value=2e-10 Score=107.22 Aligned_cols=190 Identities=19% Similarity=0.257 Sum_probs=145.8
Q ss_pred CCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE------CC--------------CCCeEEEEeCCCe
Q 042434 231 SNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW------SP--------------DDTKLLTCGNAEV 290 (517)
Q Consensus 231 s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~------s~--------------~~~~l~s~~~dg~ 290 (517)
.|.+.|+|....||.+++|+...+...........-.+..++..| +| |...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 356679999999999999999766432222211222344455555 22 3456778888999
Q ss_pred EEEEECCCCcEEEEeC--CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEE
Q 042434 291 LKLWDVETGICKHTFG--DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENL 368 (517)
Q Consensus 291 i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 368 (517)
|.+|++..|+....+. .|.+.|.++.++.+-..|.+++.|+. +..|+.....+..........+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~--v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLK--VVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCcee--EEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999888775 78999999999999999999999998 8888888766655444444589999999999999
Q ss_pred EEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCC-----CCEEEEEeC-CCeEEEEEcCC
Q 042434 369 ISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVD-----CKNFIVNLN-SQEIHMWDVAG 424 (517)
Q Consensus 369 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~-----~~~l~~~~~-d~~i~~~d~~~ 424 (517)
++++ +.|.+||+.+.+ ..+.+|..+|.+++|..+ |.+++++.. +..+.+|-+..
T Consensus 160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 8876 579999999998 677889999999999876 777776654 44567776644
No 261
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=4.1e-11 Score=118.70 Aligned_cols=273 Identities=14% Similarity=0.198 Sum_probs=179.8
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEE---EEeccCC--CCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLK---HTLRSHQ--NPVSFVAWSPDDTKLLTCGNAEVLKLWD 295 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~---~~~~~h~--~~v~~l~~s~~~~~l~s~~~dg~i~iwd 295 (517)
|-+++++..+-. +||.+|+. -.|.+||+..+.-+... ..+..|. +.+. -.+.+++++..-+.+..=+
T Consensus 6 ~~~~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-----l~~~~~v~~~~~~~v~~~~ 77 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-----LLSGKIVTCAKSDEVYVKE 77 (967)
T ss_pred ccccccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhcccccccccccce-----eccceEEEEEeecceeecc
Confidence 344555555543 57777654 46999998755322111 1222330 0000 1234455555444333322
Q ss_pred CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEee-eCcCCC---ceEEEEEccCCCEEEEE
Q 042434 296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAW-RGTRIP---KVLDLAVTPDGENLISV 371 (517)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~-~~~~~~---~i~~~~~~~~~~~l~~~ 371 (517)
.... .. ......|....+..+...++.++.++. +++|+.....+..- ...... ...-+.++++.-++++|
T Consensus 78 ~~~~-~~---~~~s~wi~g~~l~~e~k~i~l~~~~ns--~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~g 151 (967)
T KOG0974|consen 78 ASNQ-II---ERFSDWIFGAKLFEENKKIALVTSRNS--LLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASG 151 (967)
T ss_pred hhhh-hh---hhccccccccchhhhcceEEEEEcCce--EEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEec
Confidence 2111 11 122334444555556778888888888 78888765443322 222211 12223445666689999
Q ss_pred eCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434 372 LSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL 449 (517)
Q Consensus 372 ~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 449 (517)
+.-+.|.+|+..... .....|.+.+.++.++.||+++++.+.|..+++|++.+.........+|....+. ++ +.|
T Consensus 152 sv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~--~~-~~~ 228 (967)
T KOG0974|consen 152 SVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA--CC-FLP 228 (967)
T ss_pred cccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE--EE-ecc
Confidence 999999999987433 4578899999999999999999999999999999998875555456667665333 33 355
Q ss_pred CCcEEEEecCCCcEEEEecCCCceeEEecCCC-CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHS-MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
+ .++++++|.+.++|+.. ++.+.++.+|. ..|..++..++. ...+|++.||.+++|+....
T Consensus 229 n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 229 N--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred c--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchhhhhhhcc
Confidence 5 99999999999999754 66666888885 578999999888 79999999999999998653
No 262
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.37 E-value=2.4e-09 Score=98.51 Aligned_cols=262 Identities=12% Similarity=0.058 Sum_probs=159.8
Q ss_pred CCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeC----------CCcEEEEEecCCCeeeEEEEeccC-----
Q 042434 202 DHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSS----------DCSAIIWKVLEDSKLTLKHTLRSH----- 266 (517)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~----------dg~i~iw~~~~~~~~~~~~~~~~h----- 266 (517)
+....++....+.+..+..-..+-- + +||||+.|+.+.. +..|.+||..+.+. ...+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~---~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP---IADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE---EeEEccCCCchh
Confidence 3444556666677777764443333 4 9999998877655 78899999976643 3333321
Q ss_pred --CCCEEEEEECCCCCeEEEEe-C-CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC
Q 042434 267 --QNPVSFVAWSPDDTKLLTCG-N-AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG 342 (517)
Q Consensus 267 --~~~v~~l~~s~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~ 342 (517)
......++++|||++|++.. . +..|.+.|+.+++.+..+.-.. ...-...+++... +-+.||.......+..+
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKG 178 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCC
Confidence 22334789999999998765 3 6899999999999998875422 2222222222222 22345543333333333
Q ss_pred CeeEee-eC--cCCCce-EEEEEcc-CCCEEEEEeCCCcEEEEECCCce-----E-Eeec--------cCCCeeEEEEcC
Q 042434 343 NEIKAW-RG--TRIPKV-LDLAVTP-DGENLISVLSDKDIRILNLGTYA-----E-RVIS--------EEHPITSLSVSV 403 (517)
Q Consensus 343 ~~~~~~-~~--~~~~~i-~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~-----~-~~~~--------~~~~i~~~~~s~ 403 (517)
+..... .. .....+ ..-.+.+ +|+++++... |.|.+.|+.... . .... .......+++++
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 322111 00 000000 0003455 7877777666 999999965432 1 1111 122344599999
Q ss_pred CCCEEEEEe----------CCCeEEEEEcCCCCccceEEe-CcccCceEEEeecCCCCCc-EEEEec-CCCcEEEEecCC
Q 042434 404 DCKNFIVNL----------NSQEIHMWDVAGKWEKPFKYT-GHSQNKYVIRSCFGGLDGT-FIASGS-ENSQIYIWNRRN 470 (517)
Q Consensus 404 ~~~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~ 470 (517)
+++.+++.. ..+.|.++|..+. +....+. ++. ...+.++||++ +|++.+ .++.|.++|..+
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~-kvi~~i~vG~~-----~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTG-KRLRKIELGHE-----IDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCC-eEEEEEeCCCc-----eeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 999988853 2257999999887 4444433 332 33445599999 877666 578899999999
Q ss_pred CceeEEec
Q 042434 471 SKPIEILS 478 (517)
Q Consensus 471 ~~~~~~~~ 478 (517)
++.+.++.
T Consensus 332 ~k~i~~i~ 339 (352)
T TIGR02658 332 GKELSSVN 339 (352)
T ss_pred CeEEeeec
Confidence 99998883
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.36 E-value=4.2e-11 Score=111.66 Aligned_cols=207 Identities=13% Similarity=0.113 Sum_probs=150.2
Q ss_pred CCCCeEEEEeCCCeEEEEECCCCcEEEEeCCC---CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCC
Q 042434 277 PDDTKLLTCGNAEVLKLWDVETGICKHTFGDH---GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRI 353 (517)
Q Consensus 277 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~ 353 (517)
|...++|....||.+++|+..+++....|.+. .+..++..|. |.... .+.+.....
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~~~--------------s~~k~~~~~-- 61 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSADY--------------SPMKWLSLE-- 61 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----EEecc--------------chHHHHhHH--
Confidence 45678999999999999999999887777432 3344444443 11111 111000000
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEECCCceEE----eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc
Q 042434 354 PKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER----VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP 429 (517)
Q Consensus 354 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~ 429 (517)
.. -..+.+...++-|...|.|.+|+...++.. .-.|.+.+.++.++.+-..+.+++.|..+..|+.... ...
T Consensus 62 -~~--~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~-~~~ 137 (541)
T KOG4547|consen 62 -KA--KKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK-VII 137 (541)
T ss_pred -HH--hhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc-eee
Confidence 00 011234457888899999999999888722 2356778999999999999999999999999999776 555
Q ss_pred eEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCC-----CCcEEEEeeCCC
Q 042434 430 FKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK-----RPKMLASASDDH 504 (517)
Q Consensus 430 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~~l~s~~~dg 504 (517)
..+...... +...+.+|||..+++++ +.|++||+++++.+.+|.||.++|+++.|..+ |..+|.+...+.
T Consensus 138 ~~~~~~~~~---~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 138 RIWKEQKPL---VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred eeeccCCCc---cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence 555554444 44455589999999886 57999999999999999999999999999877 546777777778
Q ss_pred cEEEeCCCC
Q 042434 505 TIRIWGPCQ 513 (517)
Q Consensus 505 ~v~iw~~~~ 513 (517)
.+.+|-+..
T Consensus 213 ~i~~w~v~~ 221 (541)
T KOG4547|consen 213 GITVWVVEK 221 (541)
T ss_pred ceeEEEEEc
Confidence 888897765
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=1.5e-11 Score=127.71 Aligned_cols=221 Identities=12% Similarity=0.154 Sum_probs=166.8
Q ss_pred ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC
Q 042434 264 RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG 342 (517)
Q Consensus 264 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~ 342 (517)
..+-..|.++.-+|...+.++|+.||.+++|....++.+..+. .....|+.+.|+.+|+.+..+..||. +-.|....
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~--l~l~q~~p 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD--LSLWQASP 2282 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCc--eeecccCC
Confidence 3456778999999999999999999999999999888877765 23488999999999999999999999 77777776
Q ss_pred CeeEeeeCcCCCceEEEEEccCCCEEEEEe---CCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCe
Q 042434 343 NEIKAWRGTRIPKVLDLAVTPDGENLISVL---SDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQE 416 (517)
Q Consensus 343 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 416 (517)
+....++.+.. ...++.|-. ..+++++ .++.+.+||..-.. .....|.+.++++++.|....+++|+.+|.
T Consensus 2283 k~~~s~qchnk-~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2283 KPYTSWQCHNK-ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred cceeccccCCc-cccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCc
Confidence 66666666553 455666654 4455543 46789999975433 444778899999999999999999999999
Q ss_pred EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC-C--CCC--e--eEEEe
Q 042434 417 IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG-H--SMT--V--NCVSW 489 (517)
Q Consensus 417 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h--~~~--v--~~v~~ 489 (517)
|++||++.. +....+.. +. ...++++|+..|.|+||++....++++++. | .+- . ..+-.
T Consensus 2360 v~l~D~rqr-ql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v 2425 (2439)
T KOG1064|consen 2360 VCLFDIRQR-QLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINV 2425 (2439)
T ss_pred EEEeehHHH-HHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeee
Confidence 999999765 33333332 12 456899999999999999998888877763 1 111 1 22333
Q ss_pred cCCCCcEEEEeeCCCc
Q 042434 490 NPKRPKMLASASDDHT 505 (517)
Q Consensus 490 ~~~~~~~l~s~~~dg~ 505 (517)
.+. +.|.+|+.||+
T Consensus 2426 ~~~--nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2426 GQC--NRIFSCGADGT 2439 (2439)
T ss_pred ccC--ceEEEecCCCC
Confidence 333 36788888874
No 265
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.34 E-value=3.5e-09 Score=110.85 Aligned_cols=285 Identities=16% Similarity=0.190 Sum_probs=183.9
Q ss_pred cccCcEEEEEECCCCCEEEEeeCCCcEEEE----EecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434 220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIW----KVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD 295 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw----~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 295 (517)
...+.|.++.|-++...++.+..+|.|.+. +... ...+.+. .-...|.+++||||+..|+..+.++++.+-+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~-~~~E~VG---~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE-DEIEIVG---SVDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC-ceeEEEE---EEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 345789999999999999999999999999 4322 2233333 3478899999999999999999999887763
Q ss_pred CC---------------C--------CcEEEEeCC------------------------CCCceEEEEEeCCCCeEEEee
Q 042434 296 VE---------------T--------GICKHTFGD------------------------HGFIVSSCAWFPDSKRLVCGS 328 (517)
Q Consensus 296 ~~---------------~--------~~~~~~~~~------------------------~~~~v~~i~~~~~~~~l~~~~ 328 (517)
-. . |+.-..|++ ....-..++|-.||.+||+.+
T Consensus 149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence 21 0 111111110 222446789999999999987
Q ss_pred C---CC-ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC---CCcEEEEECCCceE---Ee--eccCCCe
Q 042434 329 S---DT-EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS---DKDIRILNLGTYAE---RV--ISEEHPI 396 (517)
Q Consensus 329 ~---d~-~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~---~~--~~~~~~i 396 (517)
. .| .-.+.+|+-+|. +........+--.+++|.|.|+++++... ...|.+|.-+..+. .. ......+
T Consensus 229 ~~~~~~~~R~iRVy~ReG~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v 307 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSREGE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKV 307 (928)
T ss_pred EEcCCCceeEEEEECCCce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCcee
Confidence 6 44 455888887754 33322233334557899999999998765 34677777555441 11 1345679
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCC-CcEEEEecCCCcEEEEecC----C
Q 042434 397 TSLSVSVDCKNFIVNLNSQEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLD-GTFIASGSENSQIYIWNRR----N 470 (517)
Q Consensus 397 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~----~ 470 (517)
..+.|++++..|++...|. |.+|-..+- |-..+.+....... +..+.|+|. ...|...+.+|.+..++.. .
T Consensus 308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~--~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~ 384 (928)
T PF04762_consen 308 IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES--VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR 384 (928)
T ss_pred eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC--CCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe
Confidence 9999999999999987655 999988553 22222222211111 122444553 3445556655655544321 1
Q ss_pred Cc--------eeEEec-----------------------CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 471 SK--------PIEILS-----------------------GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 471 ~~--------~~~~~~-----------------------~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
+. .+..+. .-..+|.+++|++++ ..+++-..||.|.+|....
T Consensus 385 s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~-~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 385 SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN-SRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred cCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC-CeEEEEECCCCEEEEEecC
Confidence 10 111111 134689999999998 5699999999999988543
No 266
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=2.1e-09 Score=103.40 Aligned_cols=204 Identities=13% Similarity=0.080 Sum_probs=133.9
Q ss_pred cccEEEeccccCcEEEEEECCCCCE-EEEeeCC---CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE-e
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEY-LASSSSD---CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC-G 286 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~-l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~ 286 (517)
+...+.+.... .+....|||||+. ++..+.+ ..|.++|+.++... . +....+......|+|||+.++.. +
T Consensus 178 g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-~---lt~~~g~~~~~~~SPDG~~la~~~~ 252 (419)
T PRK04043 178 LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-K---IASSQGMLVVSDVSKDGSKLLLTMA 252 (419)
T ss_pred CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-E---EecCCCcEEeeEECCCCCEEEEEEc
Confidence 33344344333 7889999999985 6654443 45888888665432 2 22345566778899999877654 3
Q ss_pred CC--CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc
Q 042434 287 NA--EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP 363 (517)
Q Consensus 287 ~d--g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 363 (517)
.+ ..|.++|+.+++.. .+..+........|+|||+.|+..+. .+.-.|+..+..+........... . ...|+|
T Consensus 253 ~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~--~~~~SP 328 (419)
T PRK04043 253 PKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-N--NSSVST 328 (419)
T ss_pred cCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-c--CceECC
Confidence 33 47888898887644 34344333445689999998777664 455579999998766644433221 1 248999
Q ss_pred CCCEEEEEeCC---------CcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCC---eEEEEEcCC
Q 042434 364 DGENLISVLSD---------KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQ---EIHMWDVAG 424 (517)
Q Consensus 364 ~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~---~i~~~d~~~ 424 (517)
+|+.++..... ..|.+.|+.++...............|+|||+.++..+..+ .+.++++.+
T Consensus 329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 99988876654 36888898887744443334445689999999887776533 355666654
No 267
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=5.7e-10 Score=107.20 Aligned_cols=215 Identities=17% Similarity=0.194 Sum_probs=144.7
Q ss_pred CcccccCCCcccEEEeccccCcEEEEEECCCC------------CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCE
Q 042434 203 HCCGRDQIPTETVQILTEHKNEVWFVQFSNNG------------EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPV 270 (517)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~------------~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v 270 (517)
.....|....+.++.+..|...|+.+.|.|-. -.||++...|.|.+||.... ..+..+..|..++
T Consensus 36 lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~---s~~~~l~~~~~~~ 112 (1062)
T KOG1912|consen 36 LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA---SVINWLSHSNDSV 112 (1062)
T ss_pred eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh---hhhhhhcCCCcch
Confidence 34556778889999999999999999998731 25778888999999999765 3345677789999
Q ss_pred EEEEECC---CC-CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCC----
Q 042434 271 SFVAWSP---DD-TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCD---- 341 (517)
Q Consensus 271 ~~l~~s~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~---- 341 (517)
..++|-+ +. ..|++-....++.+|+..+|+.............|+.+.| |.+.+..-+..|. +...+.-
T Consensus 113 qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~--vl~~~~l~~se 190 (1062)
T KOG1912|consen 113 QDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGF--VLSCKDLGLSE 190 (1062)
T ss_pred hheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCce--EEEEeccCCCC
Confidence 9999976 33 4666667788999999999999988877777888899988 6667777777776 4443322
Q ss_pred ----CCeeEeeeCcCC-----------C-------------ceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeec
Q 042434 342 ----GNEIKAWRGTRI-----------P-------------KVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVIS 391 (517)
Q Consensus 342 ----~~~~~~~~~~~~-----------~-------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~ 391 (517)
++.......+.. . ....++|+|.-+.++.......+.++|++-.. .....
T Consensus 191 p~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi 270 (1062)
T KOG1912|consen 191 PDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI 270 (1062)
T ss_pred CCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe
Confidence 122221111100 0 01125667776666666677778888876544 22233
Q ss_pred cCCCeeEEEEcCCC--CEEEEEeCCCeEEEEEc
Q 042434 392 EEHPITSLSVSVDC--KNFIVNLNSQEIHMWDV 422 (517)
Q Consensus 392 ~~~~i~~~~~s~~~--~~l~~~~~d~~i~~~d~ 422 (517)
..+.+.-+.+-|++ ..+++...||.+.+|--
T Consensus 271 er~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 271 ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred ccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 33444445555543 34666666776666643
No 268
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.33 E-value=1.6e-10 Score=100.54 Aligned_cols=201 Identities=15% Similarity=0.175 Sum_probs=151.7
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG 299 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 299 (517)
-..+++++.++++...|+.|-..|++.-+.+... ++....+....|...|..+-|+-...++++++.|..+.---.+.+
T Consensus 67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~ 146 (404)
T KOG1409|consen 67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG 146 (404)
T ss_pred CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence 3567889999999999999999999998876432 233455667789999999999999999999999977654444555
Q ss_pred cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEE
Q 042434 300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI 379 (517)
Q Consensus 300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 379 (517)
..+..+. .....+++.+.-. +.+.|...|.+.+......+-.+......+.+.+.+++|.+....+.+|..|..+.+
T Consensus 147 ~~lg~Y~-~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~ 223 (404)
T KOG1409|consen 147 NRLGGYN-FETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIM 223 (404)
T ss_pred CcccceE-eeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEE
Confidence 4433221 0111112222111 566677778776777776666665556666679999999999999999999999999
Q ss_pred EECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434 380 LNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG 424 (517)
Q Consensus 380 ~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 424 (517)
||+...+ .....+.+.+..+...+--+.+.+++.||.|.+|+++.
T Consensus 224 wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 224 WDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9997766 55667888888888888888999999999999999854
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.32 E-value=1.2e-09 Score=93.38 Aligned_cols=267 Identities=11% Similarity=0.090 Sum_probs=168.1
Q ss_pred CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC---CCC-eEEEEeCCCeEEEEECCCCcEEEEeCCC---C---Cce
Q 042434 243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP---DDT-KLLTCGNAEVLKLWDVETGICKHTFGDH---G---FIV 312 (517)
Q Consensus 243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~---~~v 312 (517)
.|.+.+|++...+...........+..+..+.|.. +|. .++-+..+|.|.++..........+.+- . ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 46788898865433221111122345677788863 455 5566777899999987654444444322 1 124
Q ss_pred EEEEEeCCCCeEEEeeCCCceeEEEEeCCC---CeeEeeeCcCCCceEEEEEccC-CCEEEEEeCCCcEEEEECCCce--
Q 042434 313 SSCAWFPDSKRLVCGSSDTEKGIFMCDCDG---NEIKAWRGTRIPKVLDLAVTPD-GENLISVLSDKDIRILNLGTYA-- 386 (517)
Q Consensus 313 ~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-- 386 (517)
.++.|++.+..++++..+|.+. ..+... .....++.+.. ......|+.. .+.+.+|+.|+.+..||++...
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~--~v~~t~~~le~vq~wk~He~-E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSIS--GVYETEMVLEKVQTWKVHEF-EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEE--EEecceeeeeecccccccce-eeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence 5788999999999999999854 333222 22334555543 5555666653 4588999999999999999444
Q ss_pred --EEeeccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcE
Q 042434 387 --ERVISEEHPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI 463 (517)
Q Consensus 387 --~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 463 (517)
.....|...|.++.-+| .+.++++|+.|..|++||.++-.+++..-. ..++++.+...... .+..++++-.+| .
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~-~~~lL~~CMh~G-~ 278 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEI-FHRLLAACMHNG-A 278 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchh-hhHHHHHHHhcC-c
Confidence 22445677788888776 578899999999999999986544443322 22444444432211 133344443333 5
Q ss_pred EEEecCCCc-----eeEEecCCCCCeeEEEecCCCCcEEEEee-CCCcEE-EeCCCCCCC
Q 042434 464 YIWNRRNSK-----PIEILSGHSMTVNCVSWNPKRPKMLASAS-DDHTIR-IWGPCQSSE 516 (517)
Q Consensus 464 ~iwd~~~~~-----~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~v~-iw~~~~~~~ 516 (517)
+|-+...+. .....+.|.+-+..-.|.... .+++||+ .|+.++ +|-.-++.+
T Consensus 279 ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~-~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 279 KILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKD-SFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred eEEEecccccchheeeeccccccceeecccccccc-ceeeeeeccccceeeeeeeccCCc
Confidence 666655432 334456788888888886554 5789877 577766 897776653
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=4.2e-11 Score=113.72 Aligned_cols=235 Identities=16% Similarity=0.205 Sum_probs=165.2
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc---------------EEEEeCCCCCceEEEEEeCCCCeEEEeeCCC
Q 042434 267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI---------------CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT 331 (517)
Q Consensus 267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~ 331 (517)
.....|++|+....++++||.||.++|..+.+.. .-+++.+|...|.-+.|+.+.+.+-++..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4567899999999999999999999999876531 1245678999999999999999999999999
Q ss_pred ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeec-cCCCeeEEEEcCCCCEEEE
Q 042434 332 EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVIS-EEHPITSLSVSVDCKNFIV 410 (517)
Q Consensus 332 ~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~ 410 (517)
-|.||..-...-..........+.|.+++|+.||..+.....||.|.+=.+......-.. .......+.|++|.+.++.
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf 173 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALF 173 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHh
Confidence 944443322222222233344457999999999999999999999998888776532222 2223557899999999999
Q ss_pred EeCCCeEEEEEcCCCCccceEE------eC-cc---cCceEEE-----eecCCCCCcEEEEecCCCcEEEEecCCCceeE
Q 042434 411 NLNSQEIHMWDVAGKWEKPFKY------TG-HS---QNKYVIR-----SCFGGLDGTFIASGSENSQIYIWNRRNSKPIE 475 (517)
Q Consensus 411 ~~~d~~i~~~d~~~~~~~~~~~------~~-~~---~~~~~i~-----~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 475 (517)
+-.+|.+.+||..+........ .+ .. .....+. .....||...++++-.+|.+.+..-.+.....
T Consensus 174 ~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv 253 (1189)
T KOG2041|consen 174 KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV 253 (1189)
T ss_pred hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe
Confidence 9999999999986642211111 00 00 0000111 11225688899999999999887654433222
Q ss_pred EecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434 476 ILSGHSMTVNCVSWNPKRPKMLASASDD 503 (517)
Q Consensus 476 ~~~~h~~~v~~v~~~~~~~~~l~s~~~d 503 (517)
.+. ..-.+.+..|+++| .+|+.+|.|
T Consensus 254 v~d-tgm~~vgakWnh~G-~vLAvcG~~ 279 (1189)
T KOG2041|consen 254 VVD-TGMKIVGAKWNHNG-AVLAVCGND 279 (1189)
T ss_pred EEe-cccEeecceecCCC-cEEEEccCc
Confidence 232 23678899999999 789988865
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.30 E-value=4.1e-09 Score=112.48 Aligned_cols=242 Identities=13% Similarity=0.150 Sum_probs=158.8
Q ss_pred EEEEECCC-CCeEEEEeCCCeEEEEECCCCcEEEEeCC-C-------------CCceEEEEEeCCCCeEEEeeCCCceeE
Q 042434 271 SFVAWSPD-DTKLLTCGNAEVLKLWDVETGICKHTFGD-H-------------GFIVSSCAWFPDSKRLVCGSSDTEKGI 335 (517)
Q Consensus 271 ~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~-------------~~~v~~i~~~~~~~~l~~~~~d~~v~i 335 (517)
..++++++ +..+++-+.++.|.+||.. +..+..+.. . -.....+++.++++.|+++...+. +|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~-~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH-AL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc-eE
Confidence 45788775 5566676778899999975 554444432 1 123578999998887777655432 27
Q ss_pred EEEeCCCCeeEeeeCcC----------------CCceEEEEEcc-CCCEEEEEeCCCcEEEEECCCceEEeec-------
Q 042434 336 FMCDCDGNEIKAWRGTR----------------IPKVLDLAVTP-DGENLISVLSDKDIRILNLGTYAERVIS------- 391 (517)
Q Consensus 336 ~~~~~~~~~~~~~~~~~----------------~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~------- 391 (517)
..+|..+..+..+.+.. ......++++| ++..+++.+.++.|++||..++......
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 77887766665543210 11346789999 5556677778889999998776532211
Q ss_pred ---------cCCCeeEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCccceE------------EeCccc-----CceEEEe
Q 042434 392 ---------EEHPITSLSVSVDCKNFI-VNLNSQEIHMWDVAGKWEKPFK------------YTGHSQ-----NKYVIRS 444 (517)
Q Consensus 392 ---------~~~~i~~~~~s~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~------------~~~~~~-----~~~~i~~ 444 (517)
.......++++|+++.++ +.+.++.|++||+.++...... +..... .......
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 112356799999998555 5556789999998764221110 000000 0001123
Q ss_pred ecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-------------CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-------------GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
++++++|.++++-+.++.|++||..++....... ++-....+++++++| +++++-+.++.|++||+
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEEC
Confidence 4457889988888999999999998776543221 112357889999999 78999999999999999
Q ss_pred CCCC
Q 042434 512 CQSS 515 (517)
Q Consensus 512 ~~~~ 515 (517)
.+++
T Consensus 888 ~~~~ 891 (1057)
T PLN02919 888 NKGE 891 (1057)
T ss_pred CCCc
Confidence 8865
No 272
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.28 E-value=3.4e-11 Score=100.35 Aligned_cols=165 Identities=16% Similarity=0.254 Sum_probs=117.5
Q ss_pred CCchHHHHHHHHHHHhhcChHHHHHHHhhhcCeeec--C----hhHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccc
Q 042434 13 LIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYK--S----KGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVL 86 (517)
Q Consensus 13 ~~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~--~----~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~ 86 (517)
.+..+|+.+||+.||-..||.++|..+.+|+|+..+ + ..-.+++.+|..|+-++|++.+.++.+-.-...+.+.
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~ 102 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF 102 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence 578999999999999999999999999999999762 2 3455789999999999999999998543222334578
Q ss_pred hhhhhhhhhHhhhcCChhHHHHHHHhhcccCCCC-hhHHhhhhhccccc--cccccccCCcchhhhHHHHHHHHHHHhCC
Q 042434 87 FPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMS-KDTIHNLASSMLCL--EGMNLGKIDEGVVLELRKRLLVELERLLP 163 (517)
Q Consensus 87 ~~~~~~~~~el~~~~~~~~a~~~lr~~~~~~~~~-~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~r~~l~~~~~~~~~ 163 (517)
|.+++|+++|+++.+...+|+.++|.++.|.... +..++.+...+..- +.+.......-.....|.++...+...+-
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~aiL 182 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKVASEVNSAIL 182 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998874 45555555443321 11111111111123457777766665543
Q ss_pred CCCCC-CcchHHHHH
Q 042434 164 PPEVV-PERRLEHLV 177 (517)
Q Consensus 164 ~~~~~-~~~rl~~l~ 177 (517)
..... ...+|..++
T Consensus 183 ~~~~~~~~~~l~~ll 197 (228)
T KOG2659|consen 183 ASQEHESEPKLPFLL 197 (228)
T ss_pred HHhcccccchHHHHH
Confidence 22222 244566665
No 273
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.2e-08 Score=98.15 Aligned_cols=211 Identities=10% Similarity=0.059 Sum_probs=135.2
Q ss_pred CEEEEEECCCCCe-EEEEeCC---CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEE-eeCCCceeEEEEeCCCC
Q 042434 269 PVSFVAWSPDDTK-LLTCGNA---EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVC-GSSDTEKGIFMCDCDGN 343 (517)
Q Consensus 269 ~v~~l~~s~~~~~-l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~~d~~v~i~~~~~~~~ 343 (517)
......|+|||+. ++..+.+ ..|.++|+.+++..... ...+......|+|||+.++. .+.++.-.+|.++..+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 7788999999985 6644443 47999999888765544 34555667889999987664 44466666999998877
Q ss_pred eeEeeeCcCCCceEEEEEccCCCEEEEEeCC-C--cEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCC------
Q 042434 344 EIKAWRGTRIPKVLDLAVTPDGENLISVLSD-K--DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS------ 414 (517)
Q Consensus 344 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------ 414 (517)
....+..... ......|+|||+.++..+.. + .|+++|+.++........... ...|+|+|+.++.....
T Consensus 268 ~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~-~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 268 TLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN-NSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred cEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc-CceECCCCCEEEEEEcCCCcccC
Confidence 6666544332 23456899999987776643 3 688888887764222222212 35899999998877653
Q ss_pred ---CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC---cEEEEecCCCceeEEecCCCCCeeEEE
Q 042434 415 ---QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS---QIYIWNRRNSKPIEILSGHSMTVNCVS 488 (517)
Q Consensus 415 ---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~v~ 488 (517)
..|.+.|+.++.. ..+..... .....|+|||+.|+..+.++ .+.+.++. |.....+....+.+...+
T Consensus 346 ~~~~~I~v~d~~~g~~--~~LT~~~~----~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~~p~ 418 (419)
T PRK04043 346 KNTFNLYLISTNSDYI--RRLTANGV----NQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQSID 418 (419)
T ss_pred CCCcEEEEEECCCCCe--EECCCCCC----cCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccCCCC
Confidence 3688888876522 22322211 11244599999887665432 46677775 443444444444454443
Q ss_pred e
Q 042434 489 W 489 (517)
Q Consensus 489 ~ 489 (517)
|
T Consensus 419 W 419 (419)
T PRK04043 419 W 419 (419)
T ss_pred C
Confidence 3
No 274
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.26 E-value=3.7e-08 Score=88.67 Aligned_cols=222 Identities=15% Similarity=0.144 Sum_probs=146.4
Q ss_pred EEEECC-CCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEe-CCCCeEEEeeCCCceeEEEEeCCCCeeEeee
Q 042434 272 FVAWSP-DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWF-PDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR 349 (517)
Q Consensus 272 ~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~ 349 (517)
++.|.+ ++.++++-...+.|..|+..++.... +.... ...+++. ++ ..++.+...+ +..+|..+..+..+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~---~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG---IAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC---EEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc---eEEEecCCCcEEEEe
Confidence 567887 66777776678999999998876543 22222 6677777 56 4555555555 455587766554433
Q ss_pred Cc-----CCCceEEEEEccCCCEEEEEeCC--------CcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEE-EEeCCC
Q 042434 350 GT-----RIPKVLDLAVTPDGENLISVLSD--------KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFI-VNLNSQ 415 (517)
Q Consensus 350 ~~-----~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~d~ 415 (517)
.. .....+++++.++|+..++.... |.|..++...........-...+.++|+|+++.|+ +-+..+
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccc
Confidence 32 34578899999999977766543 56888888832244444556688999999999776 556688
Q ss_pred eEEEEEcCCCCc---cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEec-C
Q 042434 416 EIHMWDVAGKWE---KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWN-P 491 (517)
Q Consensus 416 ~i~~~d~~~~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~-~ 491 (517)
.|..|++..... ....+...........-+++..+|++.++....+.|.++|.. |+.+..+......+++++|. +
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~ 235 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP 235 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence 999999864322 112222112221123444557899988888788999999987 99888887666689999994 6
Q ss_pred CCCcEEEEee
Q 042434 492 KRPKMLASAS 501 (517)
Q Consensus 492 ~~~~~l~s~~ 501 (517)
+...+++|.+
T Consensus 236 ~~~~L~vTta 245 (246)
T PF08450_consen 236 DGKTLYVTTA 245 (246)
T ss_dssp TSSEEEEEEB
T ss_pred CCCEEEEEeC
Confidence 6545666543
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.25 E-value=3e-08 Score=105.97 Aligned_cols=239 Identities=14% Similarity=0.146 Sum_probs=154.4
Q ss_pred EEEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEecc--------------CCCCEEEEEECCCCCeEEEEe-CCC
Q 042434 226 WFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRS--------------HQNPVSFVAWSPDDTKLLTCG-NAE 289 (517)
Q Consensus 226 ~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~--------------h~~~v~~l~~s~~~~~l~s~~-~dg 289 (517)
..+++++ ++.++++-+.++.|++||.... . ...+.+ +-.....+++.++++.|+++. .++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~---i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~ 646 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-F---IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH 646 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-E---EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence 4567877 4667777777889999997522 1 111211 112357899999888766654 456
Q ss_pred eEEEEECCCCcEEEEeCCC-----------------CCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCeeEeeeCc
Q 042434 290 VLKLWDVETGICKHTFGDH-----------------GFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGT 351 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~-----------------~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~ 351 (517)
.|+++|..++.. .++.+. -.....++++|+ +..+++.+.++. |+.|+..+..+..+.+.
T Consensus 647 ~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~--I~v~d~~~g~v~~~~G~ 723 (1057)
T PLN02919 647 ALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQ--IWEYNISDGVTRVFSGD 723 (1057)
T ss_pred eEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCe--EEEEECCCCeEEEEecC
Confidence 899999877653 333110 123467999994 555566566666 88888876555433221
Q ss_pred --------------CCCceEEEEEccCCCEEE-EEeCCCcEEEEECCCceEEeec-----------------------cC
Q 042434 352 --------------RIPKVLDLAVTPDGENLI-SVLSDKDIRILNLGTYAERVIS-----------------------EE 393 (517)
Q Consensus 352 --------------~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~-----------------------~~ 393 (517)
.......++++|+++.++ +-+.++.|++||+.++...... ..
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 112356799999998554 5556789999999875422111 01
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc-----------CceEEEeecCCCCCcEEEEecCCCc
Q 042434 394 HPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ-----------NKYVIRSCFGGLDGTFIASGSENSQ 462 (517)
Q Consensus 394 ~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~~dg~ 462 (517)
.....++++++|..+++.+.++.|++||..++. +..+.+... .-.....++++++|+.+++-+.++.
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~--v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~ 881 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR--VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL 881 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCe--EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence 134688999999988888899999999987652 222222110 0011233455789999999899999
Q ss_pred EEEEecCCCce
Q 042434 463 IYIWNRRNSKP 473 (517)
Q Consensus 463 i~iwd~~~~~~ 473 (517)
|++||+.+++.
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999988764
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.25 E-value=2e-08 Score=96.69 Aligned_cols=257 Identities=12% Similarity=0.091 Sum_probs=154.8
Q ss_pred CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEE-EEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCc
Q 042434 233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF-VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFI 311 (517)
Q Consensus 233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 311 (517)
++..++.++.+|.+..+|..+++.. ..... .+.+.+ ... .+..++.++.+|.+..||.++|+.+..+......
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~---W~~~~-~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~ 177 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKEL---WRAKL-SSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA 177 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEe---eeecc-CceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc
Confidence 4667888888999999998776432 22211 122221 111 3456777888999999999999988776543221
Q ss_pred eE-----EEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCC---Cc---eEEEEEcc--CCCEEEEEeCCCcE
Q 042434 312 VS-----SCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRI---PK---VLDLAVTP--DGENLISVLSDKDI 377 (517)
Q Consensus 312 v~-----~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~---~~---i~~~~~~~--~~~~l~~~~~dg~i 377 (517)
+. +.... +..++.+..++. ++.+|..+... -....... .. ...+.-+| .+..+++++.+|.+
T Consensus 178 ~~~~~~~sp~~~--~~~v~~~~~~g~--v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l 253 (377)
T TIGR03300 178 LTLRGSASPVIA--DGGVLVGFAGGK--LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRV 253 (377)
T ss_pred eeecCCCCCEEE--CCEEEEECCCCE--EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEE
Confidence 11 11111 346777777787 78888754332 21111000 00 00010111 35578888899999
Q ss_pred EEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434 378 RILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG 457 (517)
Q Consensus 378 ~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 457 (517)
+.||..+++............. ...+..+++++.+|.+..+|..++ ............. .... ...+..++++
T Consensus 254 ~a~d~~tG~~~W~~~~~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG-~~~W~~~~~~~~~--~ssp--~i~g~~l~~~ 326 (377)
T TIGR03300 254 AALDLRSGRVLWKRDASSYQGP--AVDDNRLYVTDADGVVVALDRRSG-SELWKNDELKYRQ--LTAP--AVVGGYLVVG 326 (377)
T ss_pred EEEECCCCcEEEeeccCCccCc--eEeCCEEEEECCCCeEEEEECCCC-cEEEccccccCCc--cccC--EEECCEEEEE
Confidence 9999988873222211111122 235678888889999999999776 3333221111110 0000 1146688999
Q ss_pred cCCCcEEEEecCCCceeEEecCCCCCee-EEEecCCCCcEEEEeeCCCcEEEe
Q 042434 458 SENSQIYIWNRRNSKPIEILSGHSMTVN-CVSWNPKRPKMLASASDDHTIRIW 509 (517)
Q Consensus 458 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~v~~~~~~~~~l~s~~~dg~v~iw 509 (517)
+.+|.|+++|..+|+.+..++.+...+. +.++. ++ .|+.++.||.|..|
T Consensus 327 ~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~--~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 327 DFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD--GLLVQTRDGDLYAF 376 (377)
T ss_pred eCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC--EEEEEeCCceEEEe
Confidence 9999999999999999998886664433 33333 33 47789999999876
No 277
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=4.8e-09 Score=97.50 Aligned_cols=201 Identities=12% Similarity=0.154 Sum_probs=140.2
Q ss_pred ccCcEEEEEECCCC--CEEEE-----eeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE-EEEeC--C--
Q 042434 221 HKNEVWFVQFSNNG--EYLAS-----SSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGN--A-- 288 (517)
Q Consensus 221 h~~~v~~~~~s~~~--~~l~t-----~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~--d-- 288 (517)
|...|+.+.+||.+ ..+|+ +|.-+.|+||..........+..-......=..+.|++-|+-| +.++. |
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 68889999999863 35554 3556789999885222211111111122333467888877533 22222 2
Q ss_pred -------CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434 289 -------EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV 361 (517)
Q Consensus 289 -------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 361 (517)
.++.+.+++...+...+ ...++|.++.|+|+++.|+++..---.++-++|.++..+..+..+ +-.++-|
T Consensus 244 n~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~eg---pRN~~~f 319 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEG---PRNTAFF 319 (566)
T ss_pred CccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCC---CccceEE
Confidence 36888888744444444 558899999999999988775443333388889998887766554 4678899
Q ss_pred ccCCCEEEEEeC---CCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeC------CCeEEEEEcCCC
Q 042434 362 TPDGENLISVLS---DKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLN------SQEIHMWDVAGK 425 (517)
Q Consensus 362 ~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------d~~i~~~d~~~~ 425 (517)
+|.|++++.++- .|.+-+||..+.+..........+-+.|+|||.++++++. |+.++||+..+.
T Consensus 320 np~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 320 NPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 999999988775 4789999999977555555666788999999999999875 678999998764
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=1.1e-10 Score=121.53 Aligned_cols=194 Identities=13% Similarity=0.136 Sum_probs=149.4
Q ss_pred EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434 217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV 296 (517)
Q Consensus 217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 296 (517)
.++.|-..|.++.-+|...+.+||+.||.|++|..-.+.+....++. ....|+.+.|+.+|+.+..+..||.+.+|.+
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~--g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA--GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc--CcchhhhhhhcccCCceeeeccCCceeeccc
Confidence 34556778889999999999999999999999999766554444432 3488999999999999999999999999998
Q ss_pred CCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC---CCceeEEEEeCCCCe-eEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434 297 ETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS---DTEKGIFMCDCDGNE-IKAWRGTRIPKVLDLAVTPDGENLISVL 372 (517)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~---d~~v~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 372 (517)
. .++....+.|........|-. ..+++++. ++. +.+||..-.. .......|.+.++++++.|....+++|+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n--~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRN--VCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred C-CcceeccccCCccccceeeee--hhhhccccCCCCCc--ccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 6 666667788888888888875 56666543 455 7777764211 1112255556899999999999999999
Q ss_pred CCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 373 SDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 373 ~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
.+|.|++||++..+....... +. ...++++++..|.++||++...
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEcccc
Confidence 999999999988662111111 33 5578999999999999999765
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=1.2e-10 Score=107.53 Aligned_cols=284 Identities=14% Similarity=0.198 Sum_probs=181.2
Q ss_pred cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC----eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434 214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS----KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE 289 (517)
Q Consensus 214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 289 (517)
.+..+.||...|..++--.+.+-+++++.|.+|++|.+.... +..+..++..|..+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 456788999999999887788889999999999999986432 224667889999999999999998888865 88
Q ss_pred eEEEEECCCCcEEEEeC--CCCCceEEEEEeCC--CCeEEEe-eCCCceeEEEEeCCCCe----eEeee-CcCCCceEEE
Q 042434 290 VLKLWDVETGICKHTFG--DHGFIVSSCAWFPD--SKRLVCG-SSDTEKGIFMCDCDGNE----IKAWR-GTRIPKVLDL 359 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~--~~~l~~~-~~d~~v~i~~~~~~~~~----~~~~~-~~~~~~i~~~ 359 (517)
.|.+||.--|+.+..+. ...+.+..+..-++ ...+..| +...+ +..+|.+... .+.-. ......+.++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeST--VKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAEST--VKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhh--heeeecccccceeeEEeccCCCCchheeEE
Confidence 99999998887665432 12333344444443 3334333 55666 6667766322 22221 2223468899
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEE-cCCCCEEEEEeCCCeEEE-EEcCCCCccceEEeCccc
Q 042434 360 AVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSV-SVDCKNFIVNLNSQEIHM-WDVAGKWEKPFKYTGHSQ 437 (517)
Q Consensus 360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~d~~i~~-~d~~~~~~~~~~~~~~~~ 437 (517)
+..+.|+.++++-.+|.|.+.|.++++...........-+.. .|..+.++....|..+.+ |....+ ...........
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldg-imh~q~kpppe 961 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDG-IMHLQDKPPPE 961 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCC-eeeeccCCCCc
Confidence 999999999999999999999999987332211111111111 244455666666777777 765443 11111111111
Q ss_pred CceEEEeecCCCCCcEEEEecCCCcEEEEecC-C---CceeEEec--CCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434 438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNRR-N---SKPIEILS--GHSMTVNCVSWNPKRPKMLASASDDHTIRI 508 (517)
Q Consensus 438 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~-~---~~~~~~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i 508 (517)
+ ..+...-|.-++++.....+.+|.-. . ...+..+. ...+..++++.-|-+ .-+..|...|.|.+
T Consensus 962 p-----ahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN-~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 962 P-----AHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLN-CAFLAGNEHGAIAL 1032 (1034)
T ss_pred c-----hhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecccc-chhhccCCCCceee
Confidence 1 11112335567777777778888421 1 11122222 234678888888877 56777888888765
No 280
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=3.8e-09 Score=97.93 Aligned_cols=293 Identities=14% Similarity=0.142 Sum_probs=165.7
Q ss_pred HHHHHHhccccccCCCCCc-cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeC-----------CC
Q 042434 177 VETAVTSQIDSCQYHNSSV-AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSS-----------DC 244 (517)
Q Consensus 177 ~~~~~~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-----------dg 244 (517)
++....+--+...+.|... .+++...++..|--.....++.+. | ..|.-+.|||+.+||+|-+. ..
T Consensus 205 ie~RenWTetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 205 IEERENWTETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred hhhhhcceeeeEEecCCceEEEEEeccceeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 3444445444455555444 445555555555544444444443 3 34778999999999999653 24
Q ss_pred cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeE
Q 042434 245 SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRL 324 (517)
Q Consensus 245 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 324 (517)
.++|||+.+|........+.+....-.-..||.|++++|--..+ +|.||+..+...+..-.-.-..|....|+|.+..|
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLL 361 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceE
Confidence 69999998885443333322222222346899999999987664 78888876533322111223445566666666555
Q ss_pred EEeeCCCc---eeEE-----------------------EEeCCC-----------------------------CeeEeee
Q 042434 325 VCGSSDTE---KGIF-----------------------MCDCDG-----------------------------NEIKAWR 349 (517)
Q Consensus 325 ~~~~~d~~---v~i~-----------------------~~~~~~-----------------------------~~~~~~~ 349 (517)
|.=+..-. .++- .|..+| +.+....
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 53221100 0000 111111 1110000
Q ss_pred CcCCCceEEEEEccCCCEEEEEeC---CCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEe---CCCeEEE
Q 042434 350 GTRIPKVLDLAVTPDGENLISVLS---DKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNL---NSQEIHM 419 (517)
Q Consensus 350 ~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~---~d~~i~~ 419 (517)
..-...|...+|-|.|+.+++.+. ..++.+|.+.+.. ..........+.+.|+|.|++++++. ..|.+.+
T Consensus 442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F 521 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEF 521 (698)
T ss_pred eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEE
Confidence 111235778899999998776654 3478888877422 12222345678899999999988764 4789999
Q ss_pred EEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC
Q 042434 420 WDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG 479 (517)
Q Consensus 420 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 479 (517)
+|+............|.. .+-+.|.|.|+|+++++.-+..+ +.+|-.+.++.|
T Consensus 522 ~D~~~a~~k~~~~~eh~~----at~veWDPtGRYvvT~ss~wrhk---~d~GYri~tfqG 574 (698)
T KOG2314|consen 522 YDTDYADLKDTASPEHFA----ATEVEWDPTGRYVVTSSSSWRHK---VDNGYRIFTFQG 574 (698)
T ss_pred EecchhhhhhccCccccc----cccceECCCCCEEEEeeehhhhc---cccceEEEEeec
Confidence 998642122222222322 44556799999999998643221 234444444443
No 281
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.21 E-value=2.8e-08 Score=95.75 Aligned_cols=260 Identities=10% Similarity=0.025 Sum_probs=157.5
Q ss_pred CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCce
Q 042434 233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIV 312 (517)
Q Consensus 233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 312 (517)
.+..+++++.+|.+..+|..+++.. ............... ++..++.++.+|.+..+|..+|+.+....... .+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~---W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~ 137 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRL---WRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EV 137 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEe---eeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-ee
Confidence 4567888888999999998776432 222222211112222 46788888999999999999999887664332 22
Q ss_pred EE-EEEeCCCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCcCCCce-----EEEEEccCCCEEEEEeCCCcEEEEECCCc
Q 042434 313 SS-CAWFPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTRIPKV-----LDLAVTPDGENLISVLSDKDIRILNLGTY 385 (517)
Q Consensus 313 ~~-i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 385 (517)
.+ ... .+..++.++.++. ++.+|..+.. +-....... .. .+... .+..++.+..++.+..+|..++
T Consensus 138 ~~~p~v--~~~~v~v~~~~g~--l~a~d~~tG~~~W~~~~~~~-~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG 210 (377)
T TIGR03300 138 LSPPLV--ANGLVVVRTNDGR--LTALDAATGERLWTYSRVTP-ALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTG 210 (377)
T ss_pred ecCCEE--ECCEEEEECCCCe--EEEEEcCCCceeeEEccCCC-ceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCC
Confidence 21 112 3456777778888 8888886433 332222110 00 01111 1246778888899999999887
Q ss_pred eEEe-eccCC-----Ce---eEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE
Q 042434 386 AERV-ISEEH-----PI---TSLSVSV--DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI 454 (517)
Q Consensus 386 ~~~~-~~~~~-----~i---~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 454 (517)
+... ..... .+ ..+.-+| .+..+++++.+|.++.||..++ ......... .. .. ...++..+
T Consensus 211 ~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG-~~~W~~~~~-~~----~~--p~~~~~~v 282 (377)
T TIGR03300 211 QPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG-RVLWKRDAS-SY----QG--PAVDDNRL 282 (377)
T ss_pred CEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC-cEEEeeccC-Cc----cC--ceEeCCEE
Confidence 6221 11100 00 0011111 3567888888999999999776 333333211 10 00 11246678
Q ss_pred EEecCCCcEEEEecCCCceeEEecCCC-CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 455 ASGSENSQIYIWNRRNSKPIEILSGHS-MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 455 ~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
++++.||.++.+|..+|+.+....... ....+... .+ ..+++++.||.|+++|..+++.
T Consensus 283 yv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g-~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 283 YVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VG-GYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred EEECCCCeEEEEECCCCcEEEccccccCCccccCEE--EC-CEEEEEeCCCEEEEEECCCCCE
Confidence 888899999999999998876653211 22222222 24 4788899999999999988764
No 282
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.20 E-value=3.5e-10 Score=107.99 Aligned_cols=283 Identities=16% Similarity=0.214 Sum_probs=180.7
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec-cCCCCEEEEEECCCC--CeEEEEeCCCeEEEEECCC
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR-SHQNPVSFVAWSPDD--TKLLTCGNAEVLKLWDVET 298 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~--~~l~s~~~dg~i~iwd~~~ 298 (517)
.+.+.++..+|.|+-+|.++.-| +.+-|+.... .+..-+. ...-.|-...|+|.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~--~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPF--TPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCC--CCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 56777889999999999998877 4566665332 2222221 123347778888743 3333334445667898753
Q ss_pred C---cEEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434 299 G---ICKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDGENLISVL 372 (517)
Q Consensus 299 ~---~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 372 (517)
. ..-..+.+|...|+.+.|+|.. ..+++++.|.. +..||++. ..+..+..-+. ....++|+.....+.+.+
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~--vh~wd~rSp~~p~ys~~~w~s-~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTY--VHAWDMRSPHRPFYSTSSWRS-AASQVKWNYKDPNVLASS 177 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeecccccc--ceeeeccCCCcceeeeecccc-cCceeeecccCcchhhhc
Confidence 2 3344567899999999999964 57888999988 66777764 44444444332 566788988777788888
Q ss_pred CCCcEEEEECCCce---EEeeccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCC
Q 042434 373 SDKDIRILNLGTYA---ERVISEEHPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGG 448 (517)
Q Consensus 373 ~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s 448 (517)
....|.+||++.+. .....+...+..+.|.. ....+.+++.|++++.||.................. +...+ -
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~pi--w~~r~-~ 254 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPI--WRGRY-L 254 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcc--eeccc-c
Confidence 88899999998877 33444555666666654 234578888999999999865422222221111111 11111 1
Q ss_pred C--CCcEEEEecCCCcEE---------EEecCC-CceeEEecCCCCCeeEEEecCCC---------CcEEEEeeCCCcEE
Q 042434 449 L--DGTFIASGSENSQIY---------IWNRRN-SKPIEILSGHSMTVNCVSWNPKR---------PKMLASASDDHTIR 507 (517)
Q Consensus 449 ~--~~~~l~~~~~dg~i~---------iwd~~~-~~~~~~~~~h~~~v~~v~~~~~~---------~~~l~s~~~dg~v~ 507 (517)
| +|.++.-.-.+..+. .|+..+ .++++++.||.+.|...-|-..+ ...|+|-|.|.+++
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 2 222222111122333 344333 36899999999999888775422 25799999999999
Q ss_pred EeCCCC
Q 042434 508 IWGPCQ 513 (517)
Q Consensus 508 iw~~~~ 513 (517)
+|.+.+
T Consensus 335 lWpI~~ 340 (1081)
T KOG0309|consen 335 LWPIDS 340 (1081)
T ss_pred eeeccH
Confidence 998864
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.19 E-value=6e-08 Score=101.74 Aligned_cols=284 Identities=14% Similarity=0.173 Sum_probs=178.8
Q ss_pred CcEEEEEECCCCCE--EEEeeCCC--cEEEEEecCCCeeeEEEEec-----cCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434 223 NEVWFVQFSNNGEY--LASSSSDC--SAIIWKVLEDSKLTLKHTLR-----SHQNPVSFVAWSPDDTKLLTCGNAEVLKL 293 (517)
Q Consensus 223 ~~v~~~~~s~~~~~--l~t~~~dg--~i~iw~~~~~~~~~~~~~~~-----~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 293 (517)
..+...+|.+..+. ++++.... .|.+.....+.....+..+. ...+.|.++.+-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 35666677665443 33333332 34444443333223333332 23578999999999999999999999999
Q ss_pred E----ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE--EeC------C--------------CCeeEe
Q 042434 294 W----DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM--CDC------D--------------GNEIKA 347 (517)
Q Consensus 294 w----d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~--~~~------~--------------~~~~~~ 347 (517)
. +..+.. +.....-+..|.+++||||+..++..+.++++.+.. |+. . |++-..
T Consensus 102 ~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQ 180 (928)
T PF04762_consen 102 VREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQ 180 (928)
T ss_pred EEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCc
Confidence 9 544432 333334578899999999999999999998843221 110 0 011111
Q ss_pred eeC------------c-----------CCCceEEEEEccCCCEEEEEeC---C---CcEEEEECCCceEEee--ccCCCe
Q 042434 348 WRG------------T-----------RIPKVLDLAVTPDGENLISVLS---D---KDIRILNLGTYAERVI--SEEHPI 396 (517)
Q Consensus 348 ~~~------------~-----------~~~~i~~~~~~~~~~~l~~~~~---d---g~i~i~d~~~~~~~~~--~~~~~i 396 (517)
+.+ . ....-..++|-.||.++++.+- . ..++||+-. +..... ...+--
T Consensus 181 F~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe 259 (928)
T PF04762_consen 181 FHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLE 259 (928)
T ss_pred cCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCcc
Confidence 110 0 1113456889999999998875 2 478999866 332111 223334
Q ss_pred eEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc-
Q 042434 397 TSLSVSVDCKNFIVNLN---SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK- 472 (517)
Q Consensus 397 ~~~~~s~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~- 472 (517)
.+++|.|.|+.+++... ...|.+|.-++.....+.+.. ......+..+.|++|+..||....|. |.+|-..+..
T Consensus 260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW 337 (928)
T PF04762_consen 260 GALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRF-DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHW 337 (928)
T ss_pred CCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCC-CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEE
Confidence 67899999999988865 346778876553222233322 12233467788899999999987665 9999988764
Q ss_pred -eeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 473 -PIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 473 -~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
+...+.. ....+..+.|+|..+..|...+.+|.+..++
T Consensus 338 YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 338 YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 3333332 2344566999998888888888877776543
No 284
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=2.9e-09 Score=102.51 Aligned_cols=285 Identities=13% Similarity=0.129 Sum_probs=183.5
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC------------CCeEEEEeCC
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD------------DTKLLTCGNA 288 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~------------~~~l~s~~~d 288 (517)
|...-.++.|+|.| ++|.|+. ..|.|-|.. ..+.+..+..|...|+.+.|.|- .-.||++...
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~---s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~ 88 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSR---SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS 88 (1062)
T ss_pred CcccccccccCccc-eEEEecC-ceEEEEehh---hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecccc
Confidence 33446678899987 6777765 478888874 44666788889999999999872 1357788889
Q ss_pred CeEEEEECCCCcEEEEeCCCCCceEEEEEeCC---C-CeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEcc
Q 042434 289 EVLKLWDVETGICKHTFGDHGFIVSSCAWFPD---S-KRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTP 363 (517)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~-~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~ 363 (517)
|.|.+||...+..+..+..+..++..++|-+. . ..+++-..... +..|+..++ ..-.....+ ....|+.+.|
T Consensus 89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~--lvLwntdtG~k~Wk~~ys~-~iLs~f~~DP 165 (1062)
T KOG1912|consen 89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSST--LVLWNTDTGEKFWKYDYSH-EILSCFRVDP 165 (1062)
T ss_pred CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcE--EEEEEccCCceeeccccCC-cceeeeeeCC
Confidence 99999999999988889899999999999873 3 34555555555 778876643 333333333 2455688887
Q ss_pred -CCCEEEEEeCCCcEEEEECCCce-------EEe--eccCC-------------------------CeeEEEEcCCCCEE
Q 042434 364 -DGENLISVLSDKDIRILNLGTYA-------ERV--ISEEH-------------------------PITSLSVSVDCKNF 408 (517)
Q Consensus 364 -~~~~l~~~~~dg~i~i~d~~~~~-------~~~--~~~~~-------------------------~i~~~~~s~~~~~l 408 (517)
|.+.+..-+..|.+.+-+.-... ... ..+.. -...++|+|.-+.+
T Consensus 166 fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 166 FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred CCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 55566666777777666542211 111 11000 01235678877777
Q ss_pred EEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC----------------c
Q 042434 409 IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS----------------K 472 (517)
Q Consensus 409 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----------------~ 472 (517)
+...-...+.++|++-. .......-.......+..+. .|....++++..||.+.+|-.+.. .
T Consensus 246 lfi~~prellv~dle~~-~~l~vvpier~~akfv~vlP-~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~ 323 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYE-CCLAVVPIERGGAKFVDVLP-DPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGE 323 (1062)
T ss_pred EEEEeccceEEEcchhh-ceeEEEEeccCCcceeEecc-CCCcceEEEEecCCeEEEEEeeccCccccccchhhcccccc
Confidence 77788888999999755 34444433333333344433 456678999999999999976542 1
Q ss_pred eeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 473 PIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 473 ~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
.+..+.. .+-.+...+..|..+..++.--.+|.+.+|.+.+++
T Consensus 324 Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 324 QVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred ceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 1111111 112233334455544555555667888899988654
No 285
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.16 E-value=4.7e-08 Score=89.14 Aligned_cols=149 Identities=17% Similarity=0.204 Sum_probs=119.4
Q ss_pred ccccCcEEEEEECCCCCEEEEeeCCC-cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 042434 219 TEHKNEVWFVQFSNNGEYLASSSSDC-SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE 297 (517)
Q Consensus 219 ~~h~~~v~~~~~s~~~~~l~t~~~dg-~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 297 (517)
-+|.+.|.-..+..+++-++.|..|| .+-|+|..++. .+.+...-+.|.++..+|+|++++.+.....+.+.|++
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e----~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE----VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce----EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 36888899999999888999999999 89999986552 24455567889999999999999999988999999999
Q ss_pred CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCce--eEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434 298 TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEK--GIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL 372 (517)
Q Consensus 298 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v--~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 372 (517)
+|+....-+...+-|+...|+|+++++|-+-.+|.+ .|.++|+.+..+........ .=.+-+|.|++++|..-+
T Consensus 432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta-~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA-YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc-cccCcccCCCCcEEEEEe
Confidence 998776656677889999999999999999888754 37788888876655544331 334567888998776544
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=2.8e-10 Score=105.13 Aligned_cols=210 Identities=11% Similarity=0.196 Sum_probs=148.2
Q ss_pred EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-------CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc
Q 042434 260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET-------GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332 (517)
Q Consensus 260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~ 332 (517)
...+.+|+..|..++--.+.+-+++++.|.+|++|.++. ..|..+++.|+.+|.++.|..+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 356789999999988877888999999999999998853 35778889999999999999998888765 454
Q ss_pred eeEEEEeCC-CCeeEee-eCcCCCceEEEEEcc--CCCEEEEE-eCCCcEEEEECCCce----EEe---eccCCCeeEEE
Q 042434 333 KGIFMCDCD-GNEIKAW-RGTRIPKVLDLAVTP--DGENLISV-LSDKDIRILNLGTYA----ERV---ISEEHPITSLS 400 (517)
Q Consensus 333 v~i~~~~~~-~~~~~~~-~~~~~~~i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~----~~~---~~~~~~i~~~~ 400 (517)
+.+||.- +..+... .....+.+..+..-+ +...+++| +...+|+++|.+... ... ......+.+++
T Consensus 806 --iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 806 --IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred --ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 8888874 3333211 111222333333333 33344444 678899999998876 111 23345688999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEE-EecCCCceeEEec
Q 042434 401 VSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYI-WNRRNSKPIEILS 478 (517)
Q Consensus 401 ~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~ 478 (517)
+.+.|++++++-.+|+|.+.|.+++ ..+..+...... +-..+ .|..+.++....|.++.+ |....|....+.+
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G-~vINswrpmecd---llqla-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNG-KVINSWRPMECD---LLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCC-ceeccCCcccch---hhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 9999999999999999999999887 444333322222 11112 466778888888999988 9887776555554
No 287
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.11 E-value=2.6e-08 Score=85.32 Aligned_cols=202 Identities=12% Similarity=0.088 Sum_probs=134.1
Q ss_pred cCcEEEEEECC---CCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC---CEEEEEECCCCCeEEEEeCCCeEEEE
Q 042434 222 KNEVWFVQFSN---NGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN---PVSFVAWSPDDTKLLTCGNAEVLKLW 294 (517)
Q Consensus 222 ~~~v~~~~~s~---~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~l~s~~~dg~i~iw 294 (517)
.+.+..+.|.. +|. .++-+..+|.|.++.............+..-.- ...++.|++.+..++++-.+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 44556666653 455 566677789999998753322222222222111 24578899999999999999999866
Q ss_pred ECCCCcEEE--EeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCC--CCeeEeeeCcCCCceEEEEEcc-CCCEE
Q 042434 295 DVETGICKH--TFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCD--GNEIKAWRGTRIPKVLDLAVTP-DGENL 368 (517)
Q Consensus 295 d~~~~~~~~--~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~~~~~i~~~~~~~-~~~~l 368 (517)
+........ .++.|....+...|+. +.+.+++|+.|+. +.-||.+ +..+......|...|.++.-+| .+.++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~--l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I 226 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS--LSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYI 226 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCce--EEEEEecCCcceeeecceeeecceEEEecCCCCCceE
Confidence 655554433 7789999999999986 4568899999999 7777776 2223222233445788887776 46799
Q ss_pred EEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCC
Q 042434 369 ISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCK-NFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 369 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~ 425 (517)
++|+.|-.|++||.++.. .......+.|..+..+|.-. .+++++.-+..++.+....
T Consensus 227 ~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred EEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 999999999999999655 22333457889999998532 2333333334566666543
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=2.8e-09 Score=91.70 Aligned_cols=274 Identities=19% Similarity=0.292 Sum_probs=171.0
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC--eeeEEEEeccCC------------CCEEEEEECCCC--CeEEE
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS--KLTLKHTLRSHQ------------NPVSFVAWSPDD--TKLLT 284 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~h~------------~~v~~l~~s~~~--~~l~s 284 (517)
..+.|+++.|...|.||++|...|.|.++.-.... ..+....+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 46789999999999999999999999999764321 233344566664 357788887654 45666
Q ss_pred EeCCCeEEEEECCCCcEEEE--------eC-CCCCceEEEE------EeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee
Q 042434 285 CGNAEVLKLWDVETGICKHT--------FG-DHGFIVSSCA------WFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR 349 (517)
Q Consensus 285 ~~~dg~i~iwd~~~~~~~~~--------~~-~~~~~v~~i~------~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~ 349 (517)
.+.|.+|++|.+........ +. ...+++++.. .+... .++++ .+.+...
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd-~iiaa---------------~p~rvya 168 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHD-EIIAA---------------KPCRVYA 168 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccc-eEEEe---------------ccceecc
Confidence 67899999999865422111 10 1122222110 00000 11111 1112222
Q ss_pred CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce----E-Eeecc-----CCCeeEEEEcCC-CCEEEEEeCCCeEE
Q 042434 350 GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA----E-RVISE-----EHPITSLSVSVD-CKNFIVNLNSQEIH 418 (517)
Q Consensus 350 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~-~~~~~-----~~~i~~~~~s~~-~~~l~~~~~d~~i~ 418 (517)
..|.-.+.++.++.|...++++ .|=.|.+|++.... . -..++ ..-|++..|+|. ...+...+..|.|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 3343468899999998887765 56678899886543 1 11112 124788899995 45677778899999
Q ss_pred EEEcCCC-----CccceE-------EeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC-ceeEEecCCC----
Q 042434 419 MWDVAGK-----WEKPFK-------YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS-KPIEILSGHS---- 481 (517)
Q Consensus 419 ~~d~~~~-----~~~~~~-------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~---- 481 (517)
+-|++.. ...... ..........|.-..|+++|+|+++-+. -++++||++.. .++.+++-|.
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence 9999732 111111 1111222344666677999999998654 47999998865 4777775542
Q ss_pred --------CCe---eEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 482 --------MTV---NCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 482 --------~~v---~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
..| ..+.|+.+. ..+.+|+..+..-||-..+
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCc-ccccccccccceeeecccc
Confidence 233 347788887 6788999888888877543
No 289
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.10 E-value=3.4e-07 Score=78.85 Aligned_cols=239 Identities=12% Similarity=0.100 Sum_probs=133.7
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe---ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEE
Q 042434 227 FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL---RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH 303 (517)
Q Consensus 227 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~---~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 303 (517)
.++.+++|+.||.- .|..|.|=...++-. ..+... +...-.=..++||||+..||.+...|+|+++|+.. ..+.
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~-si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf 78 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFS-SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELF 78 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCch-heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeE
Confidence 46778899988876 566777766543211 111222 22223357899999999999999999999999864 3333
Q ss_pred EeCC-------CCCceEEEEEeCC------CCeEEEeeCCCceeEEEEeCCC----Cee--EeeeCcCCCceEEEEEccC
Q 042434 304 TFGD-------HGFIVSSCAWFPD------SKRLVCGSSDTEKGIFMCDCDG----NEI--KAWRGTRIPKVLDLAVTPD 364 (517)
Q Consensus 304 ~~~~-------~~~~v~~i~~~~~------~~~l~~~~~d~~v~i~~~~~~~----~~~--~~~~~~~~~~i~~~~~~~~ 364 (517)
.+.. ....|..+.|.+. ...|++-..+|.++-+.....+ ... ..+..+....|.++.++|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 3322 2356777777653 2256667777776555554321 111 2233344457999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCE-E-EEEeCCCe------EEEEEcCCCCccceEEeCcc
Q 042434 365 GENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKN-F-IVNLNSQE------IHMWDVAGKWEKPFKYTGHS 436 (517)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~-l-~~~~~d~~------i~~~d~~~~~~~~~~~~~~~ 436 (517)
.+.|++|+.... ++ .........+++-.+-.+..+ . +....++. -.+|.+-+ ...+....
T Consensus 159 h~LLlVgG~~~~------~~--~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~----~~~fs~~~ 226 (282)
T PF15492_consen 159 HRLLLVGGCEQN------QD--GMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS----FKFFSRQG 226 (282)
T ss_pred CCEEEEeccCCC------CC--ccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc----eeeeeccc
Confidence 998888775432 00 000111111222222111111 1 11111111 12222211 11111111
Q ss_pred cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCC
Q 042434 437 QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH 480 (517)
Q Consensus 437 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 480 (517)
.....+-.+..||||..||+...+|.|.+|++.+-++......+
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 11222334445999999999999999999999988777766543
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.06 E-value=7.1e-08 Score=81.58 Aligned_cols=191 Identities=12% Similarity=0.040 Sum_probs=130.7
Q ss_pred CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCc
Q 042434 233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGICKHTFGDHGFI 311 (517)
Q Consensus 233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 311 (517)
.-.+||.|+..|...+|...+... .......|...|+-+.=..| ...+..++.|.++++.+++.+..........-.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~--h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~ 160 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDG--HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT 160 (344)
T ss_pred cccEEEeccccceeeeecccCccc--ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccc
Confidence 345899999999999999875432 22333344444432222122 234666788999999988665433333222234
Q ss_pred eEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe-eeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce----
Q 042434 312 VSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA-WRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---- 386 (517)
Q Consensus 312 v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---- 386 (517)
+.++++++|+++.++.+....|-.|..|-++..+.. ........-.+..|+.....++++..||++.|||++...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 789999999999999999888444444444444333 333444456778899999999999999999999998754
Q ss_pred ---EEeeccCCCeeEEEEcCCCC--EEEEEeCCCeEEEEEcCCC
Q 042434 387 ---ERVISEEHPITSLSVSVDCK--NFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 387 ---~~~~~~~~~i~~~~~s~~~~--~l~~~~~d~~i~~~d~~~~ 425 (517)
.....|.+.+..+.|++.|. .|+..-.-+.+.+.|+++.
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 23345778899999998654 3555555678999999876
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.03 E-value=6.9e-07 Score=76.96 Aligned_cols=226 Identities=15% Similarity=0.065 Sum_probs=136.4
Q ss_pred EEECCCCCeEEEEeCCCeEEEEECCCC--cEEEEeC---CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe
Q 042434 273 VAWSPDDTKLLTCGNAEVLKLWDVETG--ICKHTFG---DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA 347 (517)
Q Consensus 273 l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~ 347 (517)
++.+.+|+.||.. .|..|-|=..++. .++.+.+ .....-.-++|+||+..||.+...|+ |.++|..+..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~--i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGT--IRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCe--EEEEecccceeEE
Confidence 4567788877764 5666666655432 2222222 23344567999999999999999999 7777888766655
Q ss_pred eeCcC------CCceEEEEEccCC------CEEEEEeCCCcEEEEECCCc--e----EEe----eccCCCeeEEEEcCCC
Q 042434 348 WRGTR------IPKVLDLAVTPDG------ENLISVLSDKDIRILNLGTY--A----ERV----ISEEHPITSLSVSVDC 405 (517)
Q Consensus 348 ~~~~~------~~~i~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~--~----~~~----~~~~~~i~~~~~s~~~ 405 (517)
+.... ...|..+.|.+.. ..|++....|.++-|-+..+ + ... ......|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 44322 2346666665432 25677778888877765321 1 111 1246689999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCc------EEEEecCCCceeEEecC
Q 042434 406 KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ------IYIWNRRNSKPIEILSG 479 (517)
Q Consensus 406 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~------i~iwd~~~~~~~~~~~~ 479 (517)
+.|++|+.... ..+ .-.....+....+.+..+|..+.+. ..+|+. -.+|.+-+.+.......
T Consensus 160 ~LLlVgG~~~~------~~~-----~s~a~~~GLtaWRiL~~~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 227 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDG-----MSKASSCGLTAWRILSDSPYYKQVT-SSEDDITASSKRRGLLRIPSFKFFSRQGQ 227 (282)
T ss_pred CEEEEeccCCC------CCc-----cccccccCceEEEEcCCCCcEEEcc-ccCccccccccccceeeccceeeeecccc
Confidence 99888875432 000 0111222233333433344433322 222221 23444333332222223
Q ss_pred CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 480 HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 480 h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
....|..|..+||| .+||+...+|.|.+|++.+-
T Consensus 228 ~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 228 EQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred CCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcc
Confidence 46789999999999 79999999999999998753
No 292
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.03 E-value=4.1e-08 Score=85.93 Aligned_cols=270 Identities=16% Similarity=0.271 Sum_probs=167.0
Q ss_pred cCcEEEEEECCCCC--EEEEeeCCCcEEEEEecCCCee--------------------------------eEEEE-eccC
Q 042434 222 KNEVWFVQFSNNGE--YLASSSSDCSAIIWKVLEDSKL--------------------------------TLKHT-LRSH 266 (517)
Q Consensus 222 ~~~v~~~~~s~~~~--~l~t~~~dg~i~iw~~~~~~~~--------------------------------~~~~~-~~~h 266 (517)
...|..+.|.++++ .+...+.|.+|++|.+...... .+.+. -.+|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 35688889988654 5566678999999988532110 01111 1357
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE---EEEeCCC-----CCceEEEEEeCC-CCeEEEeeCCCceeEEE
Q 042434 267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC---KHTFGDH-----GFIVSSCAWFPD-SKRLVCGSSDTEKGIFM 337 (517)
Q Consensus 267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~-----~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~ 337 (517)
+--|.+++++.|...++++ .|=.|.+|+++--.. +..++++ ..-|++..|+|. .+.|+.++..|+ |.+
T Consensus 164 tyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt--IrL 240 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT--IRL 240 (433)
T ss_pred eeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc--EEE
Confidence 8889999999999988885 567899999864321 2223333 456889999995 568888899999 666
Q ss_pred EeCCCC-----eeEeeeC-----------cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEeecc------
Q 042434 338 CDCDGN-----EIKAWRG-----------TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERVISE------ 392 (517)
Q Consensus 338 ~~~~~~-----~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~------ 392 (517)
.|++.. ..+.+.. .-...|.++.|+++|+++++-+. -+|++||+.... ....-|
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSK 319 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHH
Confidence 666521 1111111 11235788999999999987433 579999995433 111111
Q ss_pred ------CC---CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcE
Q 042434 393 ------EH---PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI 463 (517)
Q Consensus 393 ------~~---~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 463 (517)
.. .-..++|+.++.++++|+..+..++|++..+.....+......... .... ..-+.+.+++.....
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~-~~~~---~k~~~V~~~g~r~~~ 395 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMK-PRKV---LKLRLVSSSGKRKRD 395 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCc-cccc---ccceeeecCCCcccc
Confidence 11 2346789999999999999999999997665444444433332210 1110 122345555544332
Q ss_pred EEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEe
Q 042434 464 YIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509 (517)
Q Consensus 464 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw 509 (517)
.+| +..+ .....+...+|+|.. +.+|.+...+ ++||
T Consensus 396 ~~~-------vd~l-df~kkilh~aWhp~e-n~ia~aatnn-lyif 431 (433)
T KOG1354|consen 396 EIS-------VDAL-DFRKKILHTAWHPKE-NSIAVAATNN-LYIF 431 (433)
T ss_pred ccc-------cchh-hhhhHHHhhccCCcc-ceeeeeecCc-eEEe
Confidence 111 1111 123456677999998 6777666554 5554
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=7.5e-09 Score=93.61 Aligned_cols=251 Identities=14% Similarity=0.138 Sum_probs=175.7
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-CCeEEEEECCCC
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-AEVLKLWDVETG 299 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~ 299 (517)
|.+.|+.+..+ -.+++.+++.||.++.|.-..-...+.+..+..|-..|.+++.+-++..+.|.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 78888877654 4469999999999999986543445667778889999999999999999999777 999999999876
Q ss_pred cEEEEeCCCCCceEEEEEeC-CC--C-eEEEee-CCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434 300 ICKHTFGDHGFIVSSCAWFP-DS--K-RLVCGS-SDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDGENLISVL 372 (517)
Q Consensus 300 ~~~~~~~~~~~~v~~i~~~~-~~--~-~l~~~~-~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 372 (517)
..+.-++-..- ...+.|.. .| . .++++. .++. +.++|..+ .+...+...+..+|..+.+++-+..+++..
T Consensus 87 DminmiKL~~l-Pg~a~wv~skGd~~s~IAVs~~~sg~--i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 87 DMINMIKLVDL-PGFAEWVTSKGDKISLIAVSLFKSGK--IFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred chhhhcccccC-CCceEEecCCCCeeeeEEeecccCCC--cEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 65533321111 11222222 22 1 333333 3455 77777764 455666777778999999999999999999
Q ss_pred CCCcEEEEECCC-ce----------------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCc
Q 042434 373 SDKDIRILNLGT-YA----------------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGH 435 (517)
Q Consensus 373 ~dg~i~i~d~~~-~~----------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 435 (517)
..|.|.-|.... .+ ...........++.|+|++..+.+-..|..|++++..++ ...+.+...
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqeiDE~ 242 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQEIDEV 242 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc-hhhhhhhcc
Confidence 999999998873 11 011223456789999999999999999999999998775 222211100
Q ss_pred c------------------------------cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEe
Q 042434 436 S------------------------------QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEIL 477 (517)
Q Consensus 436 ~------------------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 477 (517)
. ........+.|...|++|+-|+.=| |++.++.+++.++.+
T Consensus 243 ~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 243 LTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred chhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 0 0111122233477899999888766 889999988877655
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.01 E-value=6.2e-09 Score=92.94 Aligned_cols=157 Identities=17% Similarity=0.205 Sum_probs=113.4
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCceE-----EeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ccc
Q 042434 356 VLDLAVTPDGENLISVLSDKDIRILNLGTYAE-----RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW-EKP 429 (517)
Q Consensus 356 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-~~~ 429 (517)
......++++++++++..+....+++...... .........+++.+..+.....++..-|.++-+|+-... ...
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 34456778888999998888887877765432 222333445666666666777777666666666553321 233
Q ss_pred eEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-CCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434 430 FKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-GHSMTVNCVSWNPKRPKMLASASDDHTIRI 508 (517)
Q Consensus 430 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i 508 (517)
...-||..- +..+.++||+++|+++..|..|++-.....-.+..+. ||..-|..++.-++. .|+|+|.|++|++
T Consensus 145 ~~~lGhvSm---l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 145 EPILGHVSM---LLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRL 219 (390)
T ss_pred chhhhhhhh---hheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCCCCcEEE
Confidence 334455443 5556679999999999999999998877666666654 799999999999876 5999999999999
Q ss_pred eCCCCCCCC
Q 042434 509 WGPCQSSEV 517 (517)
Q Consensus 509 w~~~~~~~v 517 (517)
||+.+|+.+
T Consensus 220 Wd~~sgk~L 228 (390)
T KOG3914|consen 220 WDITSGKLL 228 (390)
T ss_pred EecccCCcc
Confidence 999999863
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.00 E-value=2.6e-07 Score=78.30 Aligned_cols=261 Identities=13% Similarity=0.052 Sum_probs=158.4
Q ss_pred CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC-----CCCeEEEEeCCCeEEEEECCCCcEE-EEeCCCCCceEEE
Q 042434 242 SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP-----DDTKLLTCGNAEVLKLWDVETGICK-HTFGDHGFIVSSC 315 (517)
Q Consensus 242 ~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~i 315 (517)
....+-+|+..+..+ ..+... +.+.|-| ...+||.||..|...+|...+.+.. +....+...|+-+
T Consensus 50 ~t~sv~i~~~y~N~~-~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~ 121 (344)
T KOG4532|consen 50 KTISVPINSHYSNPK-GIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV 121 (344)
T ss_pred ceeeeEeccccCCch-hhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhh
Confidence 344577777765431 111211 3344444 3468999999999999999865533 2333333333222
Q ss_pred EEe-CCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-----EEe
Q 042434 316 AWF-PDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-----ERV 389 (517)
Q Consensus 316 ~~~-~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~ 389 (517)
.=. .....+..++.|.++++...+.+.......... -...++.+++|++++++.+....|..|.+.... ...
T Consensus 122 ~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~--~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~ 199 (344)
T KOG4532|consen 122 KRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN--LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE 199 (344)
T ss_pred hhhcccccceeeccCCcceeEEEEecCcccceeeccc--cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe
Confidence 111 122346677788885566555543322222111 137889999999999999999999999987654 122
Q ss_pred eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe-CcccCceEEEeecCCCCCc--EEEEecCCCcEEEE
Q 042434 390 ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT-GHSQNKYVIRSCFGGLDGT--FIASGSENSQIYIW 466 (517)
Q Consensus 390 ~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iw 466 (517)
......-.+.+|+.....+++++.||.+.+||++....+..... ........++.|.|++.|. +|+..-.=+.+.+.
T Consensus 200 a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~ 279 (344)
T KOG4532|consen 200 APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVV 279 (344)
T ss_pred cccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEE
Confidence 33444567788999999999999999999999987533322211 1112334577777776553 34444344689999
Q ss_pred ecCCCceeEEec-------CCC-CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 467 NRRNSKPIEILS-------GHS-MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 467 d~~~~~~~~~~~-------~h~-~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
|+++++....+. .|. ..|..-.|+.++. -+.+.+.+ .+.=|++.+.
T Consensus 280 D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~-s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 280 DTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE-SNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred EcccCceeeEEecCccccccccccccccccccCCCc-ccccccch-hhheeecccc
Confidence 999987554432 232 3477888888774 34344433 2444555443
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.99 E-value=1.1e-08 Score=91.49 Aligned_cols=159 Identities=17% Similarity=0.223 Sum_probs=111.6
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCe-eeEEEEeccCCCCEEEEEECCCCCeEEEE---eCCCeEEEEECCCC
Q 042434 224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSK-LTLKHTLRSHQNPVSFVAWSPDDTKLLTC---GNAEVLKLWDVETG 299 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l~s~---~~dg~i~iwd~~~~ 299 (517)
.+..+..+|++++||.+..+....++++....+ .+...... -...-+++.|..+......+ +....+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 444566778888888888887777777764443 22332222 22333445555555444443 44556777777666
Q ss_pred cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEE
Q 042434 300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI 379 (517)
Q Consensus 300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 379 (517)
.+...+ +|-..++.++|+||+++|+++..|+.|+|..+. ....+..+..+|...|..++.-++. .|++++.|+++++
T Consensus 143 ~~~~~l-GhvSml~dVavS~D~~~IitaDRDEkIRvs~yp-a~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 143 RCEPIL-GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP-ATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRL 219 (390)
T ss_pred Ccchhh-hhhhhhheeeecCCCCEEEEecCCceEEEEecC-cccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEE
Confidence 655555 899999999999999999999999995554332 3455666777677789999887654 5899999999999
Q ss_pred EECCCce
Q 042434 380 LNLGTYA 386 (517)
Q Consensus 380 ~d~~~~~ 386 (517)
||+.+++
T Consensus 220 Wd~~sgk 226 (390)
T KOG3914|consen 220 WDITSGK 226 (390)
T ss_pred EecccCC
Confidence 9999887
No 297
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=5.1e-09 Score=91.51 Aligned_cols=153 Identities=11% Similarity=0.230 Sum_probs=121.3
Q ss_pred EEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce------EEeeccCCCeeEEEEcC-CCCE
Q 042434 335 IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA------ERVISEEHPITSLSVSV-DCKN 407 (517)
Q Consensus 335 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s~-~~~~ 407 (517)
+.+.+..+.....+. ..+.|.++.|...++.+..|..+|.|..+|++.+. ...+.|...++++..-. ++.+
T Consensus 236 v~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~ 313 (425)
T KOG2695|consen 236 VLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQK 313 (425)
T ss_pred eEEEEeecccccccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccce
Confidence 777777766655555 23478889999999999999999999999998762 66778899999998877 8889
Q ss_pred EEEEeCCCeEEEEEcCCC--CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC----
Q 042434 408 FIVNLNSQEIHMWDVAGK--WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS---- 481 (517)
Q Consensus 408 l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---- 481 (517)
+++.+.+|.|.+||++.. ...+..+.||......+.... .+....+++++.|...+||.++.|.++.+++...
T Consensus 314 LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e 392 (425)
T KOG2695|consen 314 LMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASE 392 (425)
T ss_pred EeeccCcCceeEeeehhhhcccceeeeeccccccccccccc-ccccceEEEccCeeEEEEEecccCceeeccCCCCcccc
Confidence 999999999999999764 123788899987655444433 6777889999999999999999999999887433
Q ss_pred CCeeEEEec
Q 042434 482 MTVNCVSWN 490 (517)
Q Consensus 482 ~~v~~v~~~ 490 (517)
..+.+++|.
T Consensus 393 ~d~~sv~~~ 401 (425)
T KOG2695|consen 393 VDIPSVAFD 401 (425)
T ss_pred ccccceehh
Confidence 345566664
No 298
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.91 E-value=1.2e-06 Score=84.89 Aligned_cols=259 Identities=11% Similarity=0.064 Sum_probs=148.4
Q ss_pred CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEE-EEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCc
Q 042434 233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF-VAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFI 311 (517)
Q Consensus 233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~-l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 311 (517)
++..++.++.+|.+..+|..+++.. ...... +.+.+ ... .+..++.++.+|.+..+|..+|+.+..+......
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~---W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVA---WQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCc---ccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence 3456777888999999998777432 222211 12211 111 2456777888999999999999988777532111
Q ss_pred eEE-EEEeC--CCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCC---C---ceEEEEEcc--CCCEEEEEeCCCcEEE
Q 042434 312 VSS-CAWFP--DSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRI---P---KVLDLAVTP--DGENLISVLSDKDIRI 379 (517)
Q Consensus 312 v~~-i~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~---~---~i~~~~~~~--~~~~l~~~~~dg~i~i 379 (517)
+.. ..-+| .+..++.++.+|. ++-++..+... -....... . ....+..+| .+..+++++.+|.+..
T Consensus 193 ~~~~~~~sP~v~~~~v~~~~~~g~--v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a 270 (394)
T PRK11138 193 LTLRGESAPATAFGGAIVGGDNGR--VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA 270 (394)
T ss_pred ccccCCCCCEEECCEEEEEcCCCE--EEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence 000 00011 1335666777777 66666553322 11110000 0 001111122 3456777888999999
Q ss_pred EECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC--CCcEEEEe
Q 042434 380 LNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL--DGTFIASG 457 (517)
Q Consensus 380 ~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~ 457 (517)
+|..+++............+ ...+..+++++.+|.+..+|..++ ............. .. +| .+.+|+.+
T Consensus 271 ld~~tG~~~W~~~~~~~~~~--~~~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~~--~~----sp~v~~g~l~v~ 341 (394)
T PRK11138 271 LDLRSGQIVWKREYGSVNDF--AVDGGRIYLVDQNDRVYALDTRGG-VELWSQSDLLHRL--LT----APVLYNGYLVVG 341 (394)
T ss_pred EECCCCCEEEeecCCCccCc--EEECCEEEEEcCCCeEEEEECCCC-cEEEcccccCCCc--cc----CCEEECCEEEEE
Confidence 99998873322211111112 224667888889999999999776 3222211111100 00 11 25577888
Q ss_pred cCCCcEEEEecCCCceeEEecCCCCCee-EEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 458 SENSQIYIWNRRNSKPIEILSGHSMTVN-CVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 458 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
+.||.|++.|..+|+.+.........+. ...+. ++ .|+.++.||.|+.++.
T Consensus 342 ~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~-~~--~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 342 DSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVA-DD--KLLIQARDGTVYAITR 393 (394)
T ss_pred eCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEE-CC--EEEEEeCCceEEEEeC
Confidence 9999999999999998887764333333 22232 33 6788899999988764
No 299
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.8e-07 Score=83.70 Aligned_cols=246 Identities=16% Similarity=0.151 Sum_probs=145.9
Q ss_pred EEeccCCCCEEEEEECCCCC-eEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEE
Q 042434 261 HTLRSHQNPVSFVAWSPDDT-KLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMC 338 (517)
Q Consensus 261 ~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~ 338 (517)
..+.+|...|..++|+|..+ ++..++.+..|+|.|+++..++..+..+ ..+++++|.-|. ++|.+|..+|. |+++
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~--Vlvy 263 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM--VLVY 263 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCce--EEEE
Confidence 45667888999999999877 7888999999999999999998888777 889999998865 46777778888 8888
Q ss_pred eCCCC--eeEeeeC-cCCCceEEEEEcc------CCCEEEEEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEcCC
Q 042434 339 DCDGN--EIKAWRG-TRIPKVLDLAVTP------DGENLISVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVSVD 404 (517)
Q Consensus 339 ~~~~~--~~~~~~~-~~~~~i~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~ 404 (517)
|.+.. .+..+.. ....+|..++.-+ .|..++....+ +..|...... .......+...++...+.
T Consensus 264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~ 341 (463)
T KOG1645|consen 264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGV 341 (463)
T ss_pred EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCc
Confidence 88742 2222222 1222444443332 33344433332 3445443222 122333455666666666
Q ss_pred CCEEEEEeCCC----e---EEE-EEcCCCCccceEEeCc---cc-CceEEEeecCCCCCcEEEE-ecCCCcEEEEecCCC
Q 042434 405 CKNFIVNLNSQ----E---IHM-WDVAGKWEKPFKYTGH---SQ-NKYVIRSCFGGLDGTFIAS-GSENSQIYIWNRRNS 471 (517)
Q Consensus 405 ~~~l~~~~~d~----~---i~~-~d~~~~~~~~~~~~~~---~~-~~~~i~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~ 471 (517)
.+.+++....+ . +-. .|-.++......-.++ .. ....-....-.++.++++. |...+.+.+||..++
T Consensus 342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 66666655431 0 111 1111111111111111 10 0000111222455566554 455578999999999
Q ss_pred ceeEEecCCCCCeeEEEecCC-CCcEEEEeeCCCcEEEeCCCC
Q 042434 472 KPIEILSGHSMTVNCVSWNPK-RPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 472 ~~~~~~~~h~~~v~~v~~~~~-~~~~l~s~~~dg~v~iw~~~~ 513 (517)
+.+.++.- +.+|.+++.... ++.+|++-. |..++||..++
T Consensus 422 evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 422 EVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred heeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 99999974 588888887653 434565554 55688887654
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.89 E-value=8.9e-09 Score=98.69 Aligned_cols=201 Identities=18% Similarity=0.289 Sum_probs=145.6
Q ss_pred CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC--CCeeEeeeCcCCCceEEEEEccCCC--EEEEEeCCCcEEEEECCC
Q 042434 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD--GNEIKAWRGTRIPKVLDLAVTPDGE--NLISVLSDKDIRILNLGT 384 (517)
Q Consensus 309 ~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~ 384 (517)
..++.++..+|.|+-++.++.-| +++.|+. ..+.+-+.....-.+-...|+|... +-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g---l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG---LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC---eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 45677888999999999999988 5666654 3333333333333567788887543 556666667777898865
Q ss_pred ce-----EEeeccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec
Q 042434 385 YA-----ERVISEEHPITSLSVSVDC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS 458 (517)
Q Consensus 385 ~~-----~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 458 (517)
.. ....+|...++.+.|.|.. ..+++++.|..+..||++........+..-......+.+-+ .++. +.+.+
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny--k~p~-vlass 177 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY--KDPN-VLASS 177 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc--cCcc-hhhhc
Confidence 43 3444677789999999964 56788899999999999987666666555444444444433 2344 44455
Q ss_pred CCCcEEEEecCCC-ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 459 ENSQIYIWNRRNS-KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 459 ~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
....|++||.+.| .++..+++|...|+.++|+......+.+++.||+|+.|+.....
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 6678999998876 68899999999999999987654578999999999999987654
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.89 E-value=5.9e-06 Score=74.34 Aligned_cols=217 Identities=17% Similarity=0.118 Sum_probs=135.6
Q ss_pred EEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEEC-CCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 042434 227 FVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWS-PDDTKLLTCGNAEVLKLWDVETGICKHT 304 (517)
Q Consensus 227 ~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 304 (517)
++.|.+ ++.++++--..+.|..|+..++.. .. +.. .. ...+++. +++. ++.+...+ +.++|..+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--~~--~~~-~~-~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--EV--IDL-PG-PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE--EE--EES-SS-EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE--EE--Eec-CC-CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEE
Confidence 567888 777777777789999999865422 11 221 22 6677777 6654 55545544 55569998865443
Q ss_pred eCC-----CCCceEEEEEeCCCCeEEEeeCCCc------eeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEE-EEe
Q 042434 305 FGD-----HGFIVSSCAWFPDSKRLVCGSSDTE------KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLI-SVL 372 (517)
Q Consensus 305 ~~~-----~~~~v~~i~~~~~~~~l~~~~~d~~------v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~ 372 (517)
... .......+++.|+|+..++...... -.++.++..+......... .....++|+|+++.|+ +-+
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~--~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGL--GFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEE--SSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCc--ccccceEECCcchheeeccc
Confidence 332 4567888999999997777654421 2389999884433333332 3678999999999776 556
Q ss_pred CCCcEEEEECCC--ce----EEeec-cC--CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEE
Q 042434 373 SDKDIRILNLGT--YA----ERVIS-EE--HPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIR 443 (517)
Q Consensus 373 ~dg~i~i~d~~~--~~----~~~~~-~~--~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~ 443 (517)
..+.|..|++.. .. ..... .. .....+++..+|+..++....+.|.++|..+ .....+..... ....
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G--~~~~~i~~p~~--~~t~ 229 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG--KLLREIELPVP--RPTN 229 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS--CEEEEEE-SSS--SEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc--cEEEEEcCCCC--CEEE
Confidence 678899999853 21 11211 12 2378899999999888888899999999874 33343332212 2233
Q ss_pred eecCCCCCcEEEEe
Q 042434 444 SCFGGLDGTFIASG 457 (517)
Q Consensus 444 ~~~~s~~~~~l~~~ 457 (517)
+++..++.+.|+..
T Consensus 230 ~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 230 CAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEESTTSSEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 44435665555443
No 302
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.86 E-value=7.6e-09 Score=62.85 Aligned_cols=38 Identities=29% Similarity=0.568 Sum_probs=36.4
Q ss_pred ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEE
Q 042434 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWK 250 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~ 250 (517)
+++.++.+|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.86 E-value=1.9e-06 Score=87.94 Aligned_cols=239 Identities=16% Similarity=0.162 Sum_probs=152.4
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC---C-
Q 042434 267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD---G- 342 (517)
Q Consensus 267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~---~- 342 (517)
.+.|.++.|..+.+.++.+..+|.|.+-|.++.... ....-...|.+++|+||+..++..+..+++-+...+.. .
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 468999999999999999999999999988776432 33345788999999999999999998887433222110 0
Q ss_pred ------------------CeeEeeeCcC--------------------CCceEEEEEccCCCEEEEE-----eCCCcEEE
Q 042434 343 ------------------NEIKAWRGTR--------------------IPKVLDLAVTPDGENLISV-----LSDKDIRI 379 (517)
Q Consensus 343 ------------------~~~~~~~~~~--------------------~~~i~~~~~~~~~~~l~~~-----~~dg~i~i 379 (517)
.....+.+.. .+.=+++.|-.||.++++. .....|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 1111111100 0122358999999999873 23378999
Q ss_pred EECCCce--EEeeccCCCeeEEEEcCCCCEEEEEe---CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE
Q 042434 380 LNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNL---NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI 454 (517)
Q Consensus 380 ~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 454 (517)
||-. +. .........-.+++|-|.|..+++.. .++.|.+|.-++.......+.-... ...+..+.|+.++..|
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d-e~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD-EKEVEELAWNSNSDIL 304 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccc-ccchheeeecCCCCce
Confidence 9987 33 23333444567899999999988764 4567999987553222222221111 1115566678889888
Q ss_pred EE---ecCCCcEEEEecCCCc--eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 455 AS---GSENSQIYIWNRRNSK--PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 455 ~~---~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
++ ......|++|-+.+.. +...+.-..... +.|+|..+..+..-..+|...+++
T Consensus 305 Av~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred eeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEE
Confidence 87 4555569999887653 222333222222 778886655555555666555544
No 304
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.85 E-value=1.4e-06 Score=78.07 Aligned_cols=216 Identities=15% Similarity=0.050 Sum_probs=131.3
Q ss_pred CCeEEEEECCCCcEEEEeCCC--CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcCCCceEEEEEccC
Q 042434 288 AEVLKLWDVETGICKHTFGDH--GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTRIPKVLDLAVTPD 364 (517)
Q Consensus 288 dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ 364 (517)
+|+|..||..+|+.+...... .....+. ..+++..+++++.++. ++.+|.. ++.+-...... .+.... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~--l~~~d~~tG~~~W~~~~~~--~~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGN--LYALDAKTGKVLWRFDLPG--PISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSE--EEEEETTTSEEEEEEECSS--CGGSGE-EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCE--EEEEECCCCCEEEEeeccc--ccccee-eec
Confidence 689999999999998877431 1122211 3335677888788888 9999985 44444443322 111111 234
Q ss_pred CCEEEEEeCCCcEEEEECCCceEEee--ccC----CCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC
Q 042434 365 GENLISVLSDKDIRILNLGTYAERVI--SEE----HPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN 438 (517)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~----~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 438 (517)
+..+++++.++.++.+|..+++.... ... ...........+..++++..++.|..+|+.++ ............
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~ 154 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG-KLLWKYPVGEPR 154 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT-EEEEEEESSTT-
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC-cEEEEeecCCCC
Confidence 55677777888999999988883222 111 11222333334788999999999999999887 555555443321
Q ss_pred -ceE-------EEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 439 -KYV-------IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 439 -~~~-------i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
... ..... ..++ .++.++.+|.+..+|+.+++.+.... ...+..+ ..+++ ..++.++.++.|..||
T Consensus 155 ~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 155 GSSPISSFSDINGSPV-ISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYALD 228 (238)
T ss_dssp SS--EEEETTEEEEEE-CCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEEE
T ss_pred CCcceeeecccccceE-EECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEEE
Confidence 111 11111 1244 67777777764444999999665333 2333332 23445 4677777999999999
Q ss_pred CCCCCC
Q 042434 511 PCQSSE 516 (517)
Q Consensus 511 ~~~~~~ 516 (517)
+.+|+.
T Consensus 229 ~~tG~~ 234 (238)
T PF13360_consen 229 LKTGKV 234 (238)
T ss_dssp TTTTEE
T ss_pred CCCCCE
Confidence 999874
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.85 E-value=3e-06 Score=82.05 Aligned_cols=267 Identities=9% Similarity=-0.032 Sum_probs=149.4
Q ss_pred CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEE-----EEEECC--CCCeEEEEeCCCeEEEEECCCCcEEEEe
Q 042434 233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVS-----FVAWSP--DDTKLLTCGNAEVLKLWDVETGICKHTF 305 (517)
Q Consensus 233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~-----~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 305 (517)
.+..+++++.+|.+.-+|..+++.. -...+........ .+.-.| ++..++.++.+|.+..+|.++|+.+.+.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEI-WSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEe-eEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 3456777777788888887766432 1111211000000 000011 3567778889999999999999988776
Q ss_pred CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCcCCCceE-EEEEcc--CCCEEEEEeCCCcEEEEE
Q 042434 306 GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTRIPKVL-DLAVTP--DGENLISVLSDKDIRILN 381 (517)
Q Consensus 306 ~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~~i~-~~~~~~--~~~~l~~~~~dg~i~i~d 381 (517)
........+... .+..+++++.++. ++-+|..+.. +-....... ... ...-+| .+..++.++.+|.+..+|
T Consensus 147 ~~~~~~~ssP~v--~~~~v~v~~~~g~--l~ald~~tG~~~W~~~~~~~-~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 147 KVAGEALSRPVV--SDGLVLVHTSNGM--LQALNESDGAVKWTVNLDVP-SLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred cCCCceecCCEE--ECCEEEEECCCCE--EEEEEccCCCEeeeecCCCC-cccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 543321111122 2446667777777 8888876433 323222110 000 000011 134577788899999999
Q ss_pred CCCceE-EeeccCCC--------eeEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCC
Q 042434 382 LGTYAE-RVISEEHP--------ITSLSVSV--DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLD 450 (517)
Q Consensus 382 ~~~~~~-~~~~~~~~--------i~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 450 (517)
..+++. .......+ ...+..+| .+..+++++.+|.+..+|..++ ............ .. -..
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG-~~~W~~~~~~~~----~~---~~~ 293 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG-QIVWKREYGSVN----DF---AVD 293 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC-CEEEeecCCCcc----Cc---EEE
Confidence 888762 11111000 01111222 3566777888999999999876 333222111000 00 124
Q ss_pred CcEEEEecCCCcEEEEecCCCceeEEecCCC-CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 451 GTFIASGSENSQIYIWNRRNSKPIEILSGHS-MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 451 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
+..++.++.+|.++.+|..+|+.+.....-. ....+.... ++ .++.++.||.|.+.|..+|+.
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g--~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NG--YLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CC--EEEEEeCCCEEEEEECCCCCE
Confidence 5677888899999999999998765443211 112222222 33 677889999999999988763
No 306
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.84 E-value=1.2e-05 Score=68.36 Aligned_cols=264 Identities=13% Similarity=0.104 Sum_probs=139.9
Q ss_pred CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCce
Q 042434 233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIV 312 (517)
Q Consensus 233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 312 (517)
-|++++.|+..|.+++.+..++......... ..--......+++..+..|+.|++....|..+..++...+......
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~---~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f 138 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL---ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTF 138 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeeh---hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCcee
Confidence 3678999999999999999888554322222 1111223456789999999999999999999999998876665555
Q ss_pred EEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcCCCceEE--EEEccCCCEEEEEeCCCcEEEEECCCceEEe
Q 042434 313 SSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTRIPKVLD--LAVTPDGENLISVLSDKDIRILNLGTYAERV 389 (517)
Q Consensus 313 ~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 389 (517)
.+-+..|-...|+.+...|. +........... .+.....+++.+ ++ -+..+..+.-||.+.-+|-...+...
T Consensus 139 ~sP~i~~g~~sly~a~t~G~--vlavt~~~~~~~~~w~~~~~~PiF~splc---v~~sv~i~~VdG~l~~f~~sG~qvwr 213 (354)
T KOG4649|consen 139 VSPVIAPGDGSLYAAITAGA--VLAVTKNPYSSTEFWAATRFGPIFASPLC---VGSSVIITTVDGVLTSFDESGRQVWR 213 (354)
T ss_pred ccceecCCCceEEEEeccce--EEEEccCCCCcceehhhhcCCccccCcee---ccceEEEEEeccEEEEEcCCCcEEEe
Confidence 55666674445555555665 444443332211 111111112211 11 13345555566666666633322333
Q ss_pred eccCCCeeE-EEEc-CCCCEEEEEeCCC--------eEEEEEcCCCCccceEEeCcccCceEEEeecCCC---CCcEEEE
Q 042434 390 ISEEHPITS-LSVS-VDCKNFIVNLNSQ--------EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL---DGTFIAS 456 (517)
Q Consensus 390 ~~~~~~i~~-~~~s-~~~~~l~~~~~d~--------~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~ 456 (517)
....++|.. -+-+ |..+.+..+..+- .-.+|..+.+ .....+.... ++....++ ..+++..
T Consensus 214 ~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g-~t~~vy~~p~-----l~F~~h~~~~S~~~ll~~ 287 (354)
T KOG4649|consen 214 PATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG-TTLHVYLSPK-----LRFDLHSPGISYPKLLRR 287 (354)
T ss_pred ecCCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC-cEEEEEeCcc-----cceeccCCCCcchhhhhh
Confidence 333333211 1111 3323333332222 2234444333 1111111100 11111122 2457888
Q ss_pred ecCCCcEEEEecCCCceeEEecCCCCCeeEEE--------e-cC---CCCcEEEEeeCCCcEEEeCCCCC
Q 042434 457 GSENSQIYIWNRRNSKPIEILSGHSMTVNCVS--------W-NP---KRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 457 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~--------~-~~---~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
++.||++.|.-.+ +.+.....|.+.+..+. | +| +| .|+.|+.|..|+.||+.+.
T Consensus 288 ~s~dgkv~il~~~--~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~g--rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 288 SSGDGKVMILMTS--KSLAEISSNGGELQNLEAIELSNEIFSSPVIIDG--RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred hcCCCcEEEEEec--ccccccccCCCccceEEEeecCcccccCCeEEcc--EEEEEEccCeEEEEecccc
Confidence 8899988887443 22444444444333332 2 12 34 5778889999999999864
No 307
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.82 E-value=3.2e-06 Score=80.28 Aligned_cols=263 Identities=17% Similarity=0.173 Sum_probs=144.5
Q ss_pred CCCCCEEEEe---------eCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434 231 SNNGEYLASS---------SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC 301 (517)
Q Consensus 231 s~~~~~l~t~---------~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 301 (517)
|||+++++.. +..+.+.|||+.++.. ..+......+....|||+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~----~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI----TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE----EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce----EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 6888888774 2346788999976522 22222256789999999999999875 57899999888755
Q ss_pred EEEeC-CC----------------CCceEEEEEeCCCCeEEEeeCCC---------------------------------
Q 042434 302 KHTFG-DH----------------GFIVSSCAWFPDSKRLVCGSSDT--------------------------------- 331 (517)
Q Consensus 302 ~~~~~-~~----------------~~~v~~i~~~~~~~~l~~~~~d~--------------------------------- 331 (517)
.+.-. +. -..-..+-|+||+++|+....|.
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n 155 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN 155 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence 43221 20 11235688999999988754332
Q ss_pred -ceeEEEEeCCCCeeEeee-----CcCCCceEEEEEccCCCEEEEEe--CCC---cEEEEECCCceE---EeeccCCC--
Q 042434 332 -EKGIFMCDCDGNEIKAWR-----GTRIPKVLDLAVTPDGENLISVL--SDK---DIRILNLGTYAE---RVISEEHP-- 395 (517)
Q Consensus 332 -~v~i~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~--~dg---~i~i~d~~~~~~---~~~~~~~~-- 395 (517)
.+.+++++..+.....+. ......+..+.|.++++.++..- .+. .+.++|..++.. ........
T Consensus 156 p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~ 235 (353)
T PF00930_consen 156 PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVD 235 (353)
T ss_dssp -EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSS
T ss_pred CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCccee
Confidence 123445555443332111 11233577889999988444433 332 466778766551 11112222
Q ss_pred -eeEEEEc-CCCCE-EEEEeCCCe--EEEEEcCCCCccceEEeCcccCceEE-EeecCCCCCcEE-EEecCC----CcEE
Q 042434 396 -ITSLSVS-VDCKN-FIVNLNSQE--IHMWDVAGKWEKPFKYTGHSQNKYVI-RSCFGGLDGTFI-ASGSEN----SQIY 464 (517)
Q Consensus 396 -i~~~~~s-~~~~~-l~~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l-~~~~~d----g~i~ 464 (517)
.....+. +++.. +.....+|. |.+++..++ ....+... .+.+ ....++++++.| +++..+ ..|+
T Consensus 236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~--~~~~lT~G---~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY 310 (353)
T PF00930_consen 236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG--KPRQLTSG---DWEVTSILGWDEDNNRIYFTANGDNPGERHLY 310 (353)
T ss_dssp SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS--EEEESS-S---SS-EEEEEEEECTSSEEEEEESSGGTTSBEEE
T ss_pred eecccccccCCCCEEEEEEEcCCCcEEEEEccccc--ceeccccC---ceeecccceEcCCCCEEEEEecCCCCCceEEE
Confidence 2345554 55554 444556674 555555544 22232221 2222 334445665544 455543 3566
Q ss_pred EEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434 465 IWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDD 503 (517)
Q Consensus 465 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d 503 (517)
.-++..+..+..+....+....+.|+|++..++.+++.-
T Consensus 311 ~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 311 RVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp EEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred EEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcCC
Confidence 667773344555554443336999999997666666654
No 308
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.80 E-value=1.3e-08 Score=61.75 Aligned_cols=39 Identities=41% Similarity=0.851 Sum_probs=36.6
Q ss_pred CceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 471 SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 471 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
|+++.++.+|.+.|++++|+|++ .+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 46788999999999999999998 7999999999999997
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.77 E-value=1e-07 Score=80.25 Aligned_cols=148 Identities=14% Similarity=0.241 Sum_probs=94.1
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCceE---EeeccCCCeeEEEEcCCCCEEEEEe-----CCCeEEEEEcCCCCccceEEe
Q 042434 362 TPDGENLISVLSDKDIRILNLGTYAE---RVISEEHPITSLSVSVDCKNFIVNL-----NSQEIHMWDVAGKWEKPFKYT 433 (517)
Q Consensus 362 ~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~ 433 (517)
+-.++.++++..||.+.+++.+.... ........-.+.++...+..+.++. .-+..+.|+++-. ..+.
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~----~t~~ 173 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPI----KTLI 173 (319)
T ss_pred cccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccc----cccc
Confidence 34567899999999999999876220 0000011111222222333333332 1234566666432 1111
Q ss_pred CcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCCc-eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 434 GHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNSK-PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 434 ~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
........+.+.+.+| ....+++|+.||.+-+||.++.. +...+..|+.+++.+-|+|..+..|++++.||.+.-||-
T Consensus 174 ~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 174 PSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred ccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence 1111111245555455 45678889999999999998874 556678899999999999999899999999999999997
Q ss_pred CC
Q 042434 512 CQ 513 (517)
Q Consensus 512 ~~ 513 (517)
.+
T Consensus 254 s~ 255 (319)
T KOG4714|consen 254 ST 255 (319)
T ss_pred CC
Confidence 63
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.75 E-value=4.1e-06 Score=75.13 Aligned_cols=220 Identities=18% Similarity=0.135 Sum_probs=127.5
Q ss_pred CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC
Q 042434 243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK 322 (517)
Q Consensus 243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 322 (517)
+|+|..||..+++..-. ..+..-.....+. ..+++..+++++.++.+..||..+|+.+..+.... .+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~-~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWS-YDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEE-EECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEE-EECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-ccccee-eeccc
Confidence 67888888866643211 1221111222211 22356778888899999999999999887775422 211111 22455
Q ss_pred eEEEeeCCCceeEEEEeCC-CCeeEee-eCcC--CCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE-Eeec-cCCC-
Q 042434 323 RLVCGSSDTEKGIFMCDCD-GNEIKAW-RGTR--IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE-RVIS-EEHP- 395 (517)
Q Consensus 323 ~l~~~~~d~~v~i~~~~~~-~~~~~~~-~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~-~~~~- 395 (517)
.+++++.++. ++.+|.. ++.+... .... ...........++..++++..++.|..+|.++++. .... ....
T Consensus 78 ~v~v~~~~~~--l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 78 RVYVGTSDGS--LYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEEETTSE--EEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccceee--eEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 6777777775 9999955 4554442 2211 11122233333488889999999999999999883 2211 1111
Q ss_pred ---------eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEE
Q 042434 396 ---------ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIW 466 (517)
Q Consensus 396 ---------i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 466 (517)
+..-.+..++ .++++..++.+..+|+.++. ...... ... ..... ..++..+++++.++.|..|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~-~~w~~~--~~~---~~~~~-~~~~~~l~~~~~~~~l~~~ 227 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE-KLWSKP--ISG---IYSLP-SVDGGTLYVTSSDGRLYAL 227 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE-EEEEEC--SS----ECECE-ECCCTEEEEEETTTEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC-EEEEec--CCC---ccCCc-eeeCCEEEEEeCCCEEEEE
Confidence 1122222344 77777777754444998873 222222 111 11111 3567778888799999999
Q ss_pred ecCCCceeEE
Q 042434 467 NRRNSKPIEI 476 (517)
Q Consensus 467 d~~~~~~~~~ 476 (517)
|+++|+.+.+
T Consensus 228 d~~tG~~~W~ 237 (238)
T PF13360_consen 228 DLKTGKVVWQ 237 (238)
T ss_dssp ETTTTEEEEE
T ss_pred ECCCCCEEeE
Confidence 9999987643
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=1.9e-06 Score=84.82 Aligned_cols=205 Identities=20% Similarity=0.290 Sum_probs=138.0
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCC-EEEEEECCCCCeEEEEeCCC-----eEEEEECC
Q 042434 224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNP-VSFVAWSPDDTKLLTCGNAE-----VLKLWDVE 297 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~-v~~l~~s~~~~~l~s~~~dg-----~i~iwd~~ 297 (517)
.|.| |++.+..+|.|+.+|.|.+.+ ..+.....+..+... |..+-...+.++|++.+.|+ .++||+++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln----~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN----SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec----ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 4544 568888999999999988876 345565777777777 55554444557888877765 48999985
Q ss_pred CC------cEE---EEeC----CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEc
Q 042434 298 TG------ICK---HTFG----DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVT 362 (517)
Q Consensus 298 ~~------~~~---~~~~----~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~ 362 (517)
.- .++ +.+. ....++.+++.+.+-+.+|+|-.+|.|..+.-|... ..-.........+|+.+++.
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 32 333 2222 135678899999999999999999995554444321 11122233334589999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe-Ccc
Q 042434 363 PDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT-GHS 436 (517)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~ 436 (517)
.++..++.+.....|.+|.+.... .....++.+..|.++++....+++++ +..+.+||.... .....+. ++.
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~-~~cfaf~~g~k 256 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR-GPCFAFEVGEK 256 (933)
T ss_pred cCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc-ceeeeecCCCe
Confidence 999875555566678999887544 22445666788888887655455554 456999998765 4444444 443
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.73 E-value=3.5e-05 Score=68.83 Aligned_cols=242 Identities=17% Similarity=0.150 Sum_probs=139.1
Q ss_pred EEEEECC-CCCEEEEeeCCCc-EEEEEecCCCeeeEEEEeccCCCCE--EEEEECCCCCeEEEEe-----CCCeEEEEEC
Q 042434 226 WFVQFSN-NGEYLASSSSDCS-AIIWKVLEDSKLTLKHTLRSHQNPV--SFVAWSPDDTKLLTCG-----NAEVLKLWDV 296 (517)
Q Consensus 226 ~~~~~s~-~~~~l~t~~~dg~-i~iw~~~~~~~~~~~~~~~~h~~~v--~~l~~s~~~~~l~s~~-----~dg~i~iwd~ 296 (517)
..++.+| .+..++.+-.-|+ ..+||..++.... .+....+.- -.-.||+||++|++.- ..|.|-|||.
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~---~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ---RLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee---EEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 4567788 5667777776665 5688887664432 222211111 1258999999999863 3579999999
Q ss_pred C-CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC
Q 042434 297 E-TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK 375 (517)
Q Consensus 297 ~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 375 (517)
. +.+.+..+..+.-....+.+.|||+.|+++-.. |..--..+.. .+=..+.+.
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG----I~Thpd~GR~----------------------kLNl~tM~p 138 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG----IETHPDSGRA----------------------KLNLDTMQP 138 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC----CccCcccCce----------------------ecChhhcCC
Confidence 8 667788888887777889999999888776322 1100000000 011111222
Q ss_pred cEEEEECCCce--EE--e--eccCCCeeEEEEcCCCCEEEEEeCCCe-------EEEEEcCCCCccceEEeCcc----cC
Q 042434 376 DIRILNLGTYA--ER--V--ISEEHPITSLSVSVDCKNFIVNLNSQE-------IHMWDVAGKWEKPFKYTGHS----QN 438 (517)
Q Consensus 376 ~i~i~d~~~~~--~~--~--~~~~~~i~~~~~s~~~~~l~~~~~d~~-------i~~~d~~~~~~~~~~~~~~~----~~ 438 (517)
.+...|..++. .. . ..+...+..+++.++|..++..-..|. +.+++... ....+.... .-
T Consensus 139 sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l 215 (305)
T PF07433_consen 139 SLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRL 215 (305)
T ss_pred ceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhh
Confidence 33334444433 11 1 124446777778777765554433321 22333221 111111110 01
Q ss_pred ceEEEeecCCCCCcEEEEec-CCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434 439 KYVIRSCFGGLDGTFIASGS-ENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDD 503 (517)
Q Consensus 439 ~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d 503 (517)
...+-+++++.++.++++.+ ..|.+.+||..+++.+....- ..+..++..+++ +++|.+..
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~--f~~ssG~G 277 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG--FLVSSGQG 277 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc--eEEeCCCc
Confidence 12245556688888775555 567899999999999887653 456777777776 55555543
No 313
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=5.1e-07 Score=88.31 Aligned_cols=272 Identities=14% Similarity=0.111 Sum_probs=152.6
Q ss_pred EEEEEECCCCCEEEEee----CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434 225 VWFVQFSNNGEYLASSS----SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300 (517)
Q Consensus 225 v~~~~~s~~~~~l~t~~----~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 300 (517)
-+-.+|+|...++|.++ ..|+|.||-- ++.. ..-.+.. -.+++++|+|..-.|++|-.-|.+.+|...+.+
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEP-qr~Vt~P---~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEP-QRDVTYP---VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEec-CCCC-Ccccccc---eehhhhccChHHHHHhhccccceeEEEecCCce
Confidence 34457899888888775 3688999843 3332 1111222 235679999999889999999999999988877
Q ss_pred EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe-eeCcCC-C--ceEEEEEccCCC------EEEE
Q 042434 301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA-WRGTRI-P--KVLDLAVTPDGE------NLIS 370 (517)
Q Consensus 301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~-~--~i~~~~~~~~~~------~l~~ 370 (517)
.......|..+|..+.|+++|..++++..-|.+.+|.+|..+..... +..+.. . ...+...++++. ..++
T Consensus 93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaV 172 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAV 172 (1416)
T ss_pred eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhc
Confidence 66666789999999999999999999999999888888865432111 111111 1 223344455532 1223
Q ss_pred EeCCCcEE-EEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCc--------ccCce
Q 042434 371 VLSDKDIR-ILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGH--------SQNKY 440 (517)
Q Consensus 371 ~~~dg~i~-i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--------~~~~~ 440 (517)
.+.+..+- .++.+... ..... -.-.|+|..++.++.+|+|+..|-.+....+.+.... .....
T Consensus 173 tgDe~alD~~fnwk~~~a~rs~~-------ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~ 245 (1416)
T KOG3617|consen 173 TGDESALDEPFNWKESLAERSDE-------KSGVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQMLFMGYCEAIS 245 (1416)
T ss_pred cCchhhhcccccCccchhhcccc-------ccCCCCCcEEEEEcCCceEEEEcCCCcEEEEEEccchHHHHHhcccceEE
Confidence 33333222 23222111 00000 1124677777777788888877755443333322211 11110
Q ss_pred EE------EeecCCCCCcE---------EEEecCCCcEEEEecCCCce----eEEecCCCCCeeEEEecCCCCcEEEEee
Q 042434 441 VI------RSCFGGLDGTF---------IASGSENSQIYIWNRRNSKP----IEILSGHSMTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 441 ~i------~~~~~s~~~~~---------l~~~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~~~~~l~s~~ 501 (517)
++ ...+..+.|.. .=.|+..|.|-+=.. .|-+ ...+ .....+++++++..+ ..++.|.
T Consensus 246 ~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEs-sGvLr~~eKyg~-e~ge~~~c~cY~~~~-~~l~agt 322 (1416)
T KOG3617|consen 246 IIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSES-SGVLRKSEKYGL-ELGEGILCMCYGEKE-IRLWAGT 322 (1416)
T ss_pred EEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccc-cccccCCcchhh-hcCCceEEEEEeccc-eEEEecc
Confidence 00 00000111100 001122222221111 1110 0011 124679999999988 6899999
Q ss_pred CCCcEEEeCC
Q 042434 502 DDHTIRIWGP 511 (517)
Q Consensus 502 ~dg~v~iw~~ 511 (517)
..|.+.+|.-
T Consensus 323 ~~gnv~~w~~ 332 (1416)
T KOG3617|consen 323 KEGNVTIWLD 332 (1416)
T ss_pred cCCcEEEeee
Confidence 9999999964
No 314
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.69 E-value=1.9e-05 Score=70.48 Aligned_cols=189 Identities=12% Similarity=0.069 Sum_probs=132.9
Q ss_pred EEECCCCCEEEEe-----eCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe----------------
Q 042434 228 VQFSNNGEYLASS-----SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG---------------- 286 (517)
Q Consensus 228 ~~~s~~~~~l~t~-----~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~---------------- 286 (517)
-.||+||++|++. +..|.|-|||.. ..+..+..+..|.-.-..+.+.|||+.|+++.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~--~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAA--RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECc--CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecCh
Confidence 4799999999986 345889999996 45677888888888888999999998877762
Q ss_pred --CCCeEEEEECCCCcEEEE--e--CCCCCceEEEEEeCCCCeEEEeeCCCce-----eEEEEeCCCCeeEeeeC-----
Q 042434 287 --NAEVLKLWDVETGICKHT--F--GDHGFIVSSCAWFPDSKRLVCGSSDTEK-----GIFMCDCDGNEIKAWRG----- 350 (517)
Q Consensus 287 --~dg~i~iwd~~~~~~~~~--~--~~~~~~v~~i~~~~~~~~l~~~~~d~~v-----~i~~~~~~~~~~~~~~~----- 350 (517)
.+-.+...|..+|+.+.. + ..|...|..+++.++|..++..-..|.- -+..++..+ .+..+..
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~~~~~~~p~~~~ 212 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-ALRLLPAPEEQW 212 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-cceeccCChHHH
Confidence 123566778888988776 4 2477899999999998877766544431 133333322 2222221
Q ss_pred -cCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 042434 351 -TRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWD 421 (517)
Q Consensus 351 -~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d 421 (517)
.-.+.+-++++++++..+++.+ ..+.+.+||..++.......-..+..++..+++ +++++..|.+...+
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~--f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG--FLVSSGQGQLIRLS 283 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc--eEEeCCCccEEEcc
Confidence 1124788999999998776555 567899999999886666666677777777776 55555556544333
No 315
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.67 E-value=3.4e-07 Score=77.23 Aligned_cols=168 Identities=12% Similarity=0.117 Sum_probs=100.1
Q ss_pred cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-----C
Q 042434 214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-----A 288 (517)
Q Consensus 214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-----d 288 (517)
+.+.+..|.++-.+-+.+-.++-++++..||.+.+.+.+.. +........-...-.+.+....++.+.+++. -
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~ 158 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQ 158 (319)
T ss_pred ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHH--HhhhhhcccccccccccceeecccEEecCCcceEeec
Confidence 34455556655555555556778999999999999998532 1111111111111122222334555554321 2
Q ss_pred CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccC-CC
Q 042434 289 EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD-GE 366 (517)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 366 (517)
+..++|+++..+....-......|++++-+|.. +.+++|+.||.+.+|.|+....+...+..+ ..++..+-|+|. +.
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-k~~i~eV~FHpk~p~ 237 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-KAEIWEVHFHPKNPE 237 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh-hhhhhheeccCCCch
Confidence 345666654433222222223448899999864 566778888995555555444444344443 358899999994 56
Q ss_pred EEEEEeCCCcEEEEECCC
Q 042434 367 NLISVLSDKDIRILNLGT 384 (517)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~ 384 (517)
.|++++.||.+..||..+
T Consensus 238 ~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred heeEecCCCcEEEEcCCC
Confidence 899999999999999875
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=9.6e-08 Score=83.71 Aligned_cols=143 Identities=14% Similarity=0.141 Sum_probs=107.2
Q ss_pred EEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC----CccceEEeCcccCceEEEe
Q 042434 369 ISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK----WEKPFKYTGHSQNKYVIRS 444 (517)
Q Consensus 369 ~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~~~~i~~ 444 (517)
++.+.+..+-+-|+.++....+.....|.++.|...+..+..|+.+|.|..+|++.+ ......+ -|......+..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhh
Confidence 455667778899999988777778889999999999999999999999999999764 1222222 23333333333
Q ss_pred ecCCCCCcEEEEecCCCcEEEEecCCCce---eEEecCCCCCeeEE--EecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 445 CFGGLDGTFIASGSENSQIYIWNRRNSKP---IEILSGHSMTVNCV--SWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~v--~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
+ ..++.+|++.+.+|+|++||.+.-++ +.++.||...-.-+ -.++.. ..++++|+|...|||.++.|.
T Consensus 307 L--q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 307 L--QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred h--ccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-ceEEEccCeeEEEEEecccCc
Confidence 2 23678999999999999999987766 88888886543333 334554 578899999999999998764
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=1e-05 Score=79.86 Aligned_cols=206 Identities=11% Similarity=0.103 Sum_probs=133.7
Q ss_pred EECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCc-eEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCC----C--
Q 042434 274 AWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFI-VSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDG----N-- 343 (517)
Q Consensus 274 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~----~-- 343 (517)
+|++.+..++.|+.+|.|.+.+- .-+.++.++.+... |..+....+..+|++.+.|+. +.+.+|+.+. .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 46778889999999999888873 34445777777666 444444444467888777655 3467777642 2
Q ss_pred -ee---Eeee---CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCC------ceEEeeccCCCeeEEEEcCCCCEEEE
Q 042434 344 -EI---KAWR---GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT------YAERVISEEHPITSLSVSVDCKNFIV 410 (517)
Q Consensus 344 -~~---~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~ 410 (517)
.+ +.+. .....++.+++++.+-+.+++|-.+|.|..+.-+- ..........+|+.+++..+++.++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 11 1111 11234788899999999999999999999885321 11344456779999999999988555
Q ss_pred EeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-CCCCCe
Q 042434 411 NLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-GHSMTV 484 (517)
Q Consensus 411 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v 484 (517)
......|.+|.+.+..........+..+ +.|..+++....+++++. ..+++|+.....+-.++. ||....
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~---lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGIS---LNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCcc---ceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEE
Confidence 5566789999998653122223333333 444444444332444443 359999988777777776 665443
No 318
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.64 E-value=3.9e-06 Score=80.94 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=89.0
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 300 (517)
|...|.--+++..+++++.|+.-|.+++|+-..+.- ......+..+.+..+..+++..++|.|+..|.|.++-+..+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~--~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM--RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhh--hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 455566666777889999999999999998764422 222233345667778889999999999999999999886643
Q ss_pred EE-----EEe-CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC
Q 042434 301 CK-----HTF-GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC 340 (517)
Q Consensus 301 ~~-----~~~-~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~ 340 (517)
+. ... +.|+..|++++|++|+..+++|...|.|.....|.
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 21 111 24688999999999999999999999966666655
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.63 E-value=5.4e-07 Score=88.98 Aligned_cols=179 Identities=12% Similarity=0.129 Sum_probs=129.8
Q ss_pred CCccccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEE
Q 042434 193 SSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF 272 (517)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~ 272 (517)
.....+...+....++....+..+...-..+.|+-++ .+++++.+|...|+|.+-|.. ..+.++++..|++.|.+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~---s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPN---SFETIHTFDAHSGSISD 222 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCC---cCceeeeeeccccceee
Confidence 3335566666666666666666666655555566555 477899999999999999984 45778999999999987
Q ss_pred EEECCCCCeEEEEeCC---------CeEEEEECCCCcEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeC--
Q 042434 273 VAWSPDDTKLLTCGNA---------EVLKLWDVETGICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDC-- 340 (517)
Q Consensus 273 l~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~-- 340 (517)
+.. .|+.|++||.. ..|+|||++..+.+..+..+.++ .-+.|+|. ...+++++..|. .-..|.
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq--~q~vd~~~ 297 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQ--FQFVDTAT 297 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccc--eeeccccc
Confidence 766 48899999764 46899999988777666544443 55778885 457888888888 555552
Q ss_pred -CCCeeEeeeC-cCCCceEEEEEccCCCEEEEEeCCCcEEEEE
Q 042434 341 -DGNEIKAWRG-TRIPKVLDLAVTPDGENLISVLSDKDIRILN 381 (517)
Q Consensus 341 -~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 381 (517)
.+........ ...+.+..++++++++.++.|..+|.|.+|.
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2222222222 2223599999999999999999999999997
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=4.9e-06 Score=81.45 Aligned_cols=182 Identities=12% Similarity=0.112 Sum_probs=123.4
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC 301 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 301 (517)
.+.+.|++++ +++++.|+.+|.|++.+.... + .+...|... ..+|.++++|+.||+|.|-.+-+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~----~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN----P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc----c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 4556666664 468999999999999987532 1 233334443 56899999999999999999988877
Q ss_pred EEEeCCCCCceEEEEEeCC-----CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434 302 KHTFGDHGFIVSSCAWFPD-----SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKD 376 (517)
Q Consensus 302 ~~~~~~~~~~v~~i~~~~~-----~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 376 (517)
..++ ....++.+++++|+ .+.+++|+..| +.++.-+.-++..........++|.++.|. |++++-++.+|
T Consensus 106 ~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G- 180 (846)
T KOG2066|consen 106 ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG- 180 (846)
T ss_pred ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-
Confidence 7666 45678999999997 56899999988 323322222333333334445689999885 66888877776
Q ss_pred EEEEECCCceE-EeeccCC-------CeeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 042434 377 IRILNLGTYAE-RVISEEH-------PITSLSVSVDCKNFIVNLNSQEIHMWDVA 423 (517)
Q Consensus 377 i~i~d~~~~~~-~~~~~~~-------~i~~~~~s~~~~~l~~~~~d~~i~~~d~~ 423 (517)
|++||+.+.+. ....... -...+.|.++.+ ++.| ...+|++..++
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 99999988772 2222111 234566766543 3333 44567887776
No 321
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=7.2e-07 Score=81.13 Aligned_cols=246 Identities=12% Similarity=0.107 Sum_probs=159.6
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC--C-cEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeC
Q 042434 265 SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET--G-ICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDC 340 (517)
Q Consensus 265 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~ 340 (517)
.|.+.|+.+.-+ -.+++.+++.||.++.|.-.. | +.+..+..|-..|.+++.+-++.++.+.+. |..+++ +|.
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv--fDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV--FDV 83 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE--EEe
Confidence 377777776544 457999999999999997543 1 334455678888999999999999999777 888444 444
Q ss_pred CCCeeE-eeeCcCCCceEEEEEccCCC--EE-EEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEe
Q 042434 341 DGNEIK-AWRGTRIPKVLDLAVTPDGE--NL-ISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNL 412 (517)
Q Consensus 341 ~~~~~~-~~~~~~~~~i~~~~~~~~~~--~l-~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~ 412 (517)
..-... .....-.+...++..++... .+ +....++.+.++|-.... .....|..+|..+.+.+.+..+++..
T Consensus 84 En~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred eccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 321111 11111111122222233211 22 333467899999976544 33345778999999999999999999
Q ss_pred CCCeEEEEEcCCCCccce-----E------EeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec---
Q 042434 413 NSQEIHMWDVAGKWEKPF-----K------YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS--- 478 (517)
Q Consensus 413 ~d~~i~~~d~~~~~~~~~-----~------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--- 478 (517)
..|.|.-|......+.+. . +.+.........+..++|+|..+.+-+.|..|++++.++|+++..+.
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence 999999999864211111 1 11222223335566679999999999999999999999998765432
Q ss_pred -----------------------------CCC-CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 479 -----------------------------GHS-MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 479 -----------------------------~h~-~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
.|. ..-+.+.|...+ ++|.-++-=| |++.++.++.
T Consensus 244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~-~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESG-NFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCC-CEEEeeccee-EEEEEeecCe
Confidence 121 123556777777 6777666554 6666665543
No 322
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.57 E-value=9e-08 Score=51.41 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHhhhc
Q 042434 17 YEFVRVVVQCLYSLGYQKSASCLESES 43 (517)
Q Consensus 17 ~~~~~li~q~L~~~g~~~s~~~l~~Es 43 (517)
+++++||++||.++||.+||.+|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=1.6e-06 Score=84.74 Aligned_cols=183 Identities=17% Similarity=0.205 Sum_probs=127.1
Q ss_pred CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-E
Q 042434 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-E 387 (517)
Q Consensus 309 ~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~ 387 (517)
...++|++++ ++.|+.|+.+|. ++.++..+.. .....+... ..+|.++++|+.||+|.|..+-+.. .
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~--v~~~~~~~~~-~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGA--VYLTTCQGNP-KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccce--EEEEecCCcc-ccccccccc-------ccCCceEEEecCCCcEEEeeccCCccc
Confidence 3456666665 679999999999 7777777765 333333211 5689999999999999999988877 5
Q ss_pred EeeccCCCeeEEEEcCC-----CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCc
Q 042434 388 RVISEEHPITSLSVSVD-----CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ 462 (517)
Q Consensus 388 ~~~~~~~~i~~~~~s~~-----~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 462 (517)
.......++.+++++|+ .+.+++|+..| +.++.-+=...... ...+.... .|.++.| .|+++|-++.+|
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~-v~l~~~eG-~I~~i~W--~g~lIAWand~G- 180 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS-VVLSEGEG-PIHSIKW--RGNLIAWANDDG- 180 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc-eeeecCcc-ceEEEEe--cCcEEEEecCCC-
Confidence 55777889999999997 56789998888 77776421111111 12222222 2444443 688999998887
Q ss_pred EEEEecCCCceeEEecCCCCC------eeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 463 IYIWNRRNSKPIEILSGHSMT------VNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 463 i~iwd~~~~~~~~~~~~h~~~------v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
|+|||+.+++.+..++..... -..+.|.++. .|+. |+..+|+|..++
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED--RLVI-GWGDSVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC--eEEE-ecCCeEEEEEEe
Confidence 899999998888777643333 3568888876 3443 444568887776
No 324
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=8.4e-08 Score=94.11 Aligned_cols=199 Identities=13% Similarity=0.119 Sum_probs=140.0
Q ss_pred cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC--cE
Q 042434 300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK--DI 377 (517)
Q Consensus 300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i 377 (517)
+..++|..+....+|++|+.+.++|+.|+..|. |..++..+.........|.+.++.+.-+.+|..+++.+.-. -.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Ge--ik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGE--IKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccce--EEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 345567788899999999999999999999999 66667665555555555667899999999999777665443 46
Q ss_pred EEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434 378 RILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG 457 (517)
Q Consensus 378 ~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 457 (517)
.+|++.+-- .....-..-.++.|+.....-++|+......+||+.+.......+.+.....+.-.+..|+|+..+++-
T Consensus 1170 aLW~~~s~~-~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln- 1247 (1516)
T KOG1832|consen 1170 ALWDASSTG-GPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN- 1247 (1516)
T ss_pred HHhcccccc-CccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee-
Confidence 789886521 111111234567777766666777777889999999885555446555555555567778999988873
Q ss_pred cCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 458 SENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 458 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
|| .+||++..+.++.|...+..+ .=.|+|.| .-++.-+ -|||+++
T Consensus 1248 --dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g-~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1248 --DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSG-NEVIINS-----EIWDMRT 1292 (1516)
T ss_pred --Cc--eeeeeccHHHHhhhhhheecc-cccccCCC-ceEEeec-----hhhhhHH
Confidence 55 389999888888776544322 33699999 4555544 3788765
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=8.9e-06 Score=73.21 Aligned_cols=248 Identities=13% Similarity=0.059 Sum_probs=134.4
Q ss_pred CcccEEEeccccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-CeEEEEeCC
Q 042434 211 PTETVQILTEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNA 288 (517)
Q Consensus 211 ~~~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d 288 (517)
..+....+.+|...|..++|||..+ ++..++.+..|+|.|+++. .....+..| ..+++++|.-|. ++|..|-..
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---~~vssy~a~-~~~wSC~wDlde~h~IYaGl~n 257 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQN 257 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc---eeeeheecc-CCceeeeeccCCcceeEEeccC
Confidence 3344557778999999999999766 7888999999999999755 445566666 889999998865 667788889
Q ss_pred CeEEEEECCCCcE-EEEeCC--CCCceEEEEE------eCCCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCcCCCceEE
Q 042434 289 EVLKLWDVETGIC-KHTFGD--HGFIVSSCAW------FPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTRIPKVLD 358 (517)
Q Consensus 289 g~i~iwd~~~~~~-~~~~~~--~~~~v~~i~~------~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~~i~~ 358 (517)
|.|.|||++..+- ...+.+ ...+|..++. .+.+.+++....+-. .|.+...... .........+...+
T Consensus 258 G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~--f~ei~~s~~~~p~vlele~pG~cis 335 (463)
T KOG1645|consen 258 GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQ--FYEIVFSAECLPCVLELEPPGICIS 335 (463)
T ss_pred ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhh--hhhhhccccCCCcccccCCCcceee
Confidence 9999999976432 222211 1334444333 234555665555533 3322222211 12222233345666
Q ss_pred EEEccCCCEEEEEeCCC-------cEEE-EECCCce---EEeecc-CCC-----eeEEEE-cCCCCEEEE-EeCCCeEEE
Q 042434 359 LAVTPDGENLISVLSDK-------DIRI-LNLGTYA---ERVISE-EHP-----ITSLSV-SVDCKNFIV-NLNSQEIHM 419 (517)
Q Consensus 359 ~~~~~~~~~l~~~~~dg-------~i~i-~d~~~~~---~~~~~~-~~~-----i~~~~~-s~~~~~l~~-~~~d~~i~~ 419 (517)
+.+.+..+.++...... .+-. -|..++. .....+ +.. -+...+ .++.++++. +...+.+.+
T Consensus 336 mqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil 415 (463)
T KOG1645|consen 336 MQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELIL 415 (463)
T ss_pred eeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEE
Confidence 66666555554443321 0100 0111111 000000 110 111122 234444433 344568999
Q ss_pred EEcCCCCccceEEeCcccCceEEEeecCCCCC-cEEEEecCCCcEEEEecC
Q 042434 420 WDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG-TFIASGSENSQIYIWNRR 469 (517)
Q Consensus 420 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~ 469 (517)
||..+. ...+.+.-. .....+ +.+.-++ .||++-. |..++||..+
T Consensus 416 ~D~~s~-evvQ~l~~~-epv~Di--cp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 416 QDPHSF-EVVQTLALS-EPVLDI--CPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred eccchh-heeeecccC-cceeec--ceeecCCcchhhhee-cceEEEEecC
Confidence 999876 555555433 222222 2223333 4555544 5567777644
No 326
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.50 E-value=0.00024 Score=65.59 Aligned_cols=295 Identities=17% Similarity=0.130 Sum_probs=141.1
Q ss_pred CCCcccEEEeccccCcEEEE-----EECCCCCEEEEee-CCCcEEEE--EecCCCeeeEEEEeccCC-CCEEEEEECCCC
Q 042434 209 QIPTETVQILTEHKNEVWFV-----QFSNNGEYLASSS-SDCSAIIW--KVLEDSKLTLKHTLRSHQ-NPVSFVAWSPDD 279 (517)
Q Consensus 209 ~~~~~~~~~l~~h~~~v~~~-----~~s~~~~~l~t~~-~dg~i~iw--~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~ 279 (517)
..++..+..|..+.+.-..+ +|.++|+.|+.++ .||.-.+| |+.++. +..+..+. .......++|++
T Consensus 17 ~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~----i~QLTdg~g~~~~g~~~s~~~ 92 (386)
T PF14583_consen 17 PDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE----ITQLTDGPGDNTFGGFLSPDD 92 (386)
T ss_dssp TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E----EEE---SS-B-TTT-EE-TTS
T ss_pred CCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE----EEECccCCCCCccceEEecCC
Confidence 33445555555444333333 4677887666544 46665555 554332 23333332 222246677888
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEe--CCCCeEEEeeC---CC-----------------ceeEEE
Q 042434 280 TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWF--PDSKRLVCGSS---DT-----------------EKGIFM 337 (517)
Q Consensus 280 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~---d~-----------------~v~i~~ 337 (517)
+.++-......|.-.|+++.+....+......+-...|. .|+..++..-. |. ..+|+.
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 888766666789999999998777776666666656664 34555443211 11 124667
Q ss_pred EeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC-----cEEEEECC--CceE-Eeec--cCCCeeEEEEcCCCCE
Q 042434 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK-----DIRILNLG--TYAE-RVIS--EEHPITSLSVSVDCKN 407 (517)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~--~~~~-~~~~--~~~~i~~~~~s~~~~~ 407 (517)
.++.+.......... ..+..+.++|....+++=+..| .-+||-++ .... .... ....+..=-|.|||..
T Consensus 173 idl~tG~~~~v~~~~-~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 173 IDLKTGERKVVFEDT-DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST 251 (386)
T ss_dssp EETTT--EEEEEEES-S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-
T ss_pred EECCCCceeEEEecC-ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE
Confidence 777766665554433 3678899999777666554433 12556443 3321 1111 2233555568999987
Q ss_pred EEEEeC-----CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC----------------cEEEE
Q 042434 408 FIVNLN-----SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS----------------QIYIW 466 (517)
Q Consensus 408 l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----------------~i~iw 466 (517)
+..-+. +..|.-+|+.+.... .+. .... .... ..++||++++-=+.|. -|+++
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t~~~~--~~~-~~p~--~~H~-~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~ 325 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDTGERR--RLM-EMPW--CSHF-MSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLF 325 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT--EE--EEE-EE-S--EEEE-EE-TTSSEEEEEE-------------------EEEEE
T ss_pred EEEEeecCCCCceEEEeeCCCCCCce--EEE-eCCc--eeee-EEcCCCCEEEecCCCCCccccccccceecCCcEEEEe
Confidence 765332 335667777665222 111 1111 1222 2278998887544432 56778
Q ss_pred ecCCCceeEE---------ecCCCC-CeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 467 NRRNSKPIEI---------LSGHSM-TVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 467 d~~~~~~~~~---------~~~h~~-~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
++..++.... +.++.. .=..+.|+||+..+|.++...|...||-++-+
T Consensus 326 ~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 326 DVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp ETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred ccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence 8877654321 111111 12568999999888888889998888765443
No 327
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.50 E-value=2.7e-05 Score=74.68 Aligned_cols=189 Identities=20% Similarity=0.180 Sum_probs=120.0
Q ss_pred ccCCCCEEEEEECCCCCeEEEEe---CC-CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEE-eeCCCceeEEEE
Q 042434 264 RSHQNPVSFVAWSPDDTKLLTCG---NA-EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVC-GSSDTEKGIFMC 338 (517)
Q Consensus 264 ~~h~~~v~~l~~s~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~~d~~v~i~~~ 338 (517)
..-...+..-+|+|++..++..+ .. ..+.++++.+++...... ....-...+|+|||+.++. ...||...||..
T Consensus 189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence 33456677789999998766542 22 469999999887655543 3333455789999987665 566888889999
Q ss_pred eCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CC--cEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCC
Q 042434 339 DCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DK--DIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNS 414 (517)
Q Consensus 339 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d 414 (517)
|..++....+.... +.-..-.|+|||+.++..+. .| .|.++|..... .........-..-.|+|||++++..+..
T Consensus 268 dl~~~~~~~Lt~~~-gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 268 DLDGKNLPRLTNGF-GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred cCCCCcceecccCC-ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEecc
Confidence 99987766544333 23336789999998886654 33 57777777766 3333333333378899999999888753
Q ss_pred -Ce--EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC
Q 042434 415 -QE--IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE 459 (517)
Q Consensus 415 -~~--i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 459 (517)
|. |.+.|+.++.. ...+..... ...-.+.++|+.+...+.
T Consensus 347 ~g~~~i~~~~~~~~~~-~~~lt~~~~----~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 347 GGQWDIDKNDLASGGK-IRILTSTYL----NESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCceeeEEeccCCCCc-EEEcccccc----CCCCCcCCCCceEEEecc
Confidence 33 66666655422 222221111 222233677776665443
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.50 E-value=6.9e-05 Score=77.07 Aligned_cols=199 Identities=18% Similarity=0.240 Sum_probs=134.3
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC----
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV---- 296 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~---- 296 (517)
..+.|.++.|..++.-++.+..+|.|.+-|..+.. . .....-.+.|.+++|+||+..++..+..+++.+-+-
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~---eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE-L---EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc-e---eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc
Confidence 34689999999999999999999999999875432 1 222334688999999999999999888887766432
Q ss_pred CC-------------------CcEEEEeCC---------------------CCCceEEEEEeCCCCeEEEee---CCCce
Q 042434 297 ET-------------------GICKHTFGD---------------------HGFIVSSCAWFPDSKRLVCGS---SDTEK 333 (517)
Q Consensus 297 ~~-------------------~~~~~~~~~---------------------~~~~v~~i~~~~~~~~l~~~~---~d~~v 333 (517)
-. |+....|.+ ....=+++.|--||.++++.. ..|.-
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 10 111111211 011224589999999999843 23333
Q ss_pred eEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe---CCCcEEEEECCCceE-----EeeccCCCeeEEEEcCCC
Q 042434 334 GIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL---SDKDIRILNLGTYAE-----RVISEEHPITSLSVSVDC 405 (517)
Q Consensus 334 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-----~~~~~~~~i~~~~~s~~~ 405 (517)
.+.+||..+ .+........+.-.+++|-|.|..+++.. +++.|.+|.-+.... .......++..++|+.++
T Consensus 223 kirV~drEg-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 223 KIRVYDREG-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred eEEEecccc-hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence 488888773 33333333334556899999999988764 455788888665441 122233348999999999
Q ss_pred CEEEE---EeCCCeEEEEEcCC
Q 042434 406 KNFIV---NLNSQEIHMWDVAG 424 (517)
Q Consensus 406 ~~l~~---~~~d~~i~~~d~~~ 424 (517)
..+++ ......|++|-+.+
T Consensus 302 diLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CceeeeecccccceEEEEEecC
Confidence 99988 44455699998855
No 329
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.48 E-value=0.00059 Score=58.30 Aligned_cols=258 Identities=14% Similarity=0.149 Sum_probs=131.9
Q ss_pred CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceE
Q 042434 234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVS 313 (517)
Q Consensus 234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 313 (517)
..+++.|+..+.+.--|..+++-. ....+ ...|.+-+.- -|++++.|+..|.+.+.+..+|.....+.....--.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~-We~il---g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI-WEAIL---GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE-eehhh---CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence 346666777777766666555321 11111 1222221111 367899999999999999999987777754433223
Q ss_pred EEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEe
Q 042434 314 SCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERV 389 (517)
Q Consensus 314 ~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~ 389 (517)
.....+++..+.+|+.|++ .+..|...... ...+... +...+-++.|....+.++...|.+.-....... ...
T Consensus 98 ~a~~d~~~glIycgshd~~--~yalD~~~~~cVykskcgG-~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~ 174 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGN--FYALDPKTYGCVYKSKCGG-GTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWA 174 (354)
T ss_pred ceEEcCCCceEEEecCCCc--EEEecccccceEEecccCC-ceeccceecCCCceEEEEeccceEEEEccCCCCcceehh
Confidence 3456778999999999999 88888875433 3322221 233444566644455555566655555444432 111
Q ss_pred eccCCCeeE--EEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcE----
Q 042434 390 ISEEHPITS--LSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI---- 463 (517)
Q Consensus 390 ~~~~~~i~~--~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i---- 463 (517)
.....++.+ ++. +..+..++-||.+.-+|-. + ..+.++... .+.+ ..-+...|..+.+..+.++..+
T Consensus 175 ~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~~s-G-~qvwr~~t~-GpIf-~~Pc~s~Ps~q~i~~~~~~Cf~~~~p 247 (354)
T KOG4649|consen 175 ATRFGPIFASPLCV---GSSVIITTVDGVLTSFDES-G-RQVWRPATK-GPIF-MEPCESRPSCQQISLENENCFCAPLP 247 (354)
T ss_pred hhcCCccccCceec---cceEEEEEeccEEEEEcCC-C-cEEEeecCC-Ccee-cccccCCCcceEEEEecCCeEEEecc
Confidence 112222211 111 3445556667776666632 2 222222111 1111 1111112444455555544332
Q ss_pred ----EEEecCCCceeEEecCCCCCeeEEEec-C--CCCcEEEEeeCCCcEEEe
Q 042434 464 ----YIWNRRNSKPIEILSGHSMTVNCVSWN-P--KRPKMLASASDDHTIRIW 509 (517)
Q Consensus 464 ----~iwd~~~~~~~~~~~~h~~~v~~v~~~-~--~~~~~l~s~~~dg~v~iw 509 (517)
.+|..++|...+..-..+ ...+++ | ..++++..++.||.+.|-
T Consensus 248 ~~ghL~w~~~~g~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~s~dgkv~il 297 (354)
T KOG4649|consen 248 IAGHLLWATQSGTTLHVYLSPK---LRFDLHSPGISYPKLLRRSSGDGKVMIL 297 (354)
T ss_pred ccceEEEEecCCcEEEEEeCcc---cceeccCCCCcchhhhhhhcCCCcEEEE
Confidence 245555553333221110 011121 1 113578888899988887
No 330
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.47 E-value=1.2e-05 Score=77.21 Aligned_cols=196 Identities=18% Similarity=0.189 Sum_probs=131.1
Q ss_pred cccEEEeccccCcEEEEEECCCCCEEEEee---CC-CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE-e
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYLASSS---SD-CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC-G 286 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~---~d-g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~ 286 (517)
+...+.+..-...+..-+|+|++..++..+ .. ..+.++++.++.... +..+.++ -...+|+|||+.|+.+ .
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-i~~~~g~---~~~P~fspDG~~l~f~~~ 257 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-ILNFNGN---NGAPAFSPDGSKLAFSSS 257 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce-eeccCCc---cCCccCCCCCCEEEEEEC
Confidence 445556666677888889999998776542 22 468899998775532 2334443 3456899999887754 4
Q ss_pred CCC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc
Q 042434 287 NAE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP 363 (517)
Q Consensus 287 ~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 363 (517)
.|| .|.+.|+.++...+ +....+.-+.-.|+|||+.++..+ ..|.-.|+..+.++.............. .-.|+|
T Consensus 258 rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~Sp 335 (425)
T COG0823 258 RDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSP 335 (425)
T ss_pred CCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-CccCCC
Confidence 566 46666887766333 444444444778999999887664 4566679999999877655554433222 678999
Q ss_pred CCCEEEEEeCC-Cc--EEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeC
Q 042434 364 DGENLISVLSD-KD--IRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLN 413 (517)
Q Consensus 364 ~~~~l~~~~~d-g~--i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~ 413 (517)
||++++..+.. |. |.+.|+.+.. .............++.++++.+...+.
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence 99998877753 43 6666766555 455555555666778888877665544
No 331
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.47 E-value=5.1e-06 Score=72.07 Aligned_cols=237 Identities=15% Similarity=0.167 Sum_probs=136.7
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc-E----EEEeCCCC------------CceEEEEEeCCCC--eEEEe
Q 042434 267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI-C----KHTFGDHG------------FIVSSCAWFPDSK--RLVCG 327 (517)
Q Consensus 267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~----~~~~~~~~------------~~v~~i~~~~~~~--~l~~~ 327 (517)
...|+++.|...|.+|++|...|.|.++.-+... | ...|++|. ..|..+.|..++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4678999999999999999999999999754332 1 12344442 4577888887643 67888
Q ss_pred eCCCceeEEEEeCCCCeeEeeeCc---------CCCceEEEEEccCCCEEEEEe-CCCcEEEEECCCceEEeeccCCCee
Q 042434 328 SSDTEKGIFMCDCDGNEIKAWRGT---------RIPKVLDLAVTPDGENLISVL-SDKDIRILNLGTYAERVISEEHPIT 397 (517)
Q Consensus 328 ~~d~~v~i~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~i~ 397 (517)
+.|.+ |.+|....+.++..... ..+++++.. .-.+--.+ .|..|... ........|...+.
T Consensus 106 tNdkt--iKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~----~l~lprls~hd~iiaa~---p~rvyaNaH~yhiN 176 (460)
T COG5170 106 TNDKT--IKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTK----ELLLPRLSEHDEIIAAK---PCRVYANAHPYHIN 176 (460)
T ss_pred cCCce--eeeeeeecccchhhhccccccccccccCCCcCCHH----HhhcccccccceEEEec---cceeccccceeEee
Confidence 89999 55555443333222111 111111100 00000000 01111111 01112235666789
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--cceEEeCcc--cCceEEEeecCCCCC-cEEEEecCCCcEEEEecCCCc
Q 042434 398 SLSVSVDCKNFIVNLNSQEIHMWDVAGKWE--KPFKYTGHS--QNKYVIRSCFGGLDG-TFIASGSENSQIYIWNRRNSK 472 (517)
Q Consensus 398 ~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~--~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~ 472 (517)
++++..|...++++ .|=.|.+|++.-... .+..+..|. .-..+|++.-|+|.. +.+.-.+..|.|++-|++...
T Consensus 177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 99999987777654 566889998854311 112222221 123346666667753 456667778999999998432
Q ss_pred ee------E--E--------ecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 473 PI------E--I--------LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 473 ~~------~--~--------~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
+. . + +.+-...|.++.|+++| +++++-+. -+|+|||++..+
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEeccccc
Confidence 11 1 1 11123568899999999 56665544 589999998654
No 332
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=6.3e-06 Score=81.71 Aligned_cols=192 Identities=14% Similarity=0.102 Sum_probs=132.8
Q ss_pred CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCce
Q 042434 233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIV 312 (517)
Q Consensus 233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 312 (517)
++..++.|+-...+..+|+.+.. ..+...-..+.|+-++. +++.+.+|...|+|.+-|..+.+.++++..|.+.|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~---e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEK---ETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccce---eeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccce
Confidence 34466777776778888886543 22333333444666665 57899999999999999999999999999999999
Q ss_pred EEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeec
Q 042434 313 SSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVIS 391 (517)
Q Consensus 313 ~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~ 391 (517)
..+.. .|+.|++++..+. .+ .-..|..|+|||++..+ ...+.
T Consensus 221 SDfDv--~GNlLitCG~S~R--~~---------------------------------~l~~D~FvkVYDLRmmral~PI~ 263 (1118)
T KOG1275|consen 221 SDFDV--QGNLLITCGYSMR--RY---------------------------------NLAMDPFVKVYDLRMMRALSPIQ 263 (1118)
T ss_pred eeeec--cCCeEEEeecccc--cc---------------------------------cccccchhhhhhhhhhhccCCcc
Confidence 87655 5889999887754 11 00246678999998876 33333
Q ss_pred cCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCcc-ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434 392 EEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEK-PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN 467 (517)
Q Consensus 392 ~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 467 (517)
......-+.|.|. ...+++++..|...+.|..+-..+ ...+.-+.... .+....++++|..++.|..+|.|.+|.
T Consensus 264 ~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s-~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 264 FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS-GISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC-cceeEEecCCCceEEEecccCcEeeec
Confidence 3333455667774 456888899999999995432222 22222222222 255556689999999999999999997
No 333
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.41 E-value=0.001 Score=63.83 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=83.5
Q ss_pred eEEEEEeC-CCCeEEEe----eCCCc--eeEEEEeCCCCeeE---eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEE
Q 042434 312 VSSCAWFP-DSKRLVCG----SSDTE--KGIFMCDCDGNEIK---AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILN 381 (517)
Q Consensus 312 v~~i~~~~-~~~~l~~~----~~d~~--v~i~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 381 (517)
..++.|+. ++..+.+. +.+|. +....|+...+.++ .........+.+++++|+...++.|+.||.|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 35666765 34444443 23343 22344554443332 22233345799999999999999999999999999
Q ss_pred CCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 382 LGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 382 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
...+........-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 288 ~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 288 TTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 98887666666777899999999999999999999999998654
No 334
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.39 E-value=0.00077 Score=61.18 Aligned_cols=243 Identities=13% Similarity=0.099 Sum_probs=138.2
Q ss_pred EEECCCCCEEEEeeC----------CCcEEEEEecCCCeeeEEEEecc-CC----CCEEEEEECCCCCeEEEEeC--CCe
Q 042434 228 VQFSNNGEYLASSSS----------DCSAIIWKVLEDSKLTLKHTLRS-HQ----NPVSFVAWSPDDTKLLTCGN--AEV 290 (517)
Q Consensus 228 ~~~s~~~~~l~t~~~----------dg~i~iw~~~~~~~~~~~~~~~~-h~----~~v~~l~~s~~~~~l~s~~~--dg~ 290 (517)
+..||+++.+++++. .-.|.+||..+-.....+ .+.. |. .....++++.|+++++.... ...
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI-~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI-EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE-EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE-ecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 567899998887532 335899998654222211 2221 11 12234678889998877533 457
Q ss_pred EEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEee----eCcCCCceEEEEEccCCC
Q 042434 291 LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAW----RGTRIPKVLDLAVTPDGE 366 (517)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~ 366 (517)
|.|-|+..++.+..+.... +..+--++ .+.|.+-+.||.+.-..+|..|+..... .......+..-.+...+.
T Consensus 120 VtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG 196 (342)
T ss_dssp EEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred EEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence 9999999998888774332 12222222 3468888999996666667666654322 111211233445555666
Q ss_pred EEEEEeCCCcEEEEECCCceEEeec--------------cCCCeeEEEEcCCCCEEEEEeCC--------C--eEEEEEc
Q 042434 367 NLISVLSDKDIRILNLGTYAERVIS--------------EEHPITSLSVSVDCKNFIVNLNS--------Q--EIHMWDV 422 (517)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~~~~~~--------------~~~~i~~~~~s~~~~~l~~~~~d--------~--~i~~~d~ 422 (517)
.++..+.+|.|+-.|+......... ..+...-+++++..+.|++-... + .|.++|+
T Consensus 197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~ 276 (342)
T PF06433_consen 197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL 276 (342)
T ss_dssp EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence 6777889999999988765511110 11234567888766665554321 1 4888888
Q ss_pred CCCCccceEEeCcccCceEEEeecCCCCC-cEEEEe-cCCCcEEEEecCCCceeEEecC
Q 042434 423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDG-TFIASG-SENSQIYIWNRRNSKPIEILSG 479 (517)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 479 (517)
.++ +.+.++..... +.++..+.+. .+|++. ..++.+.+||..+|+++.++..
T Consensus 277 ~t~-krv~Ri~l~~~----~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 277 KTH-KRVARIPLEHP----IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TTT-EEEEEEEEEEE----ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCC-eEEEEEeCCCc----cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 887 55555553221 2122223443 355544 5679999999999999998874
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.38 E-value=5e-05 Score=72.21 Aligned_cols=223 Identities=16% Similarity=0.210 Sum_probs=126.0
Q ss_pred CCCCCeEEEE---------eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE
Q 042434 276 SPDDTKLLTC---------GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK 346 (517)
Q Consensus 276 s~~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~ 346 (517)
|||+++++.. +..+.+.+||+++++..... .....+....|+|+|+.++..... . +|+.+..+....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~-~~~~~~~~~~~sP~g~~~~~v~~~-n--ly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT-PPPPKLQDAKWSPDGKYIAFVRDN-N--LYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEETT-E--EEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc-CCccccccceeecCCCeeEEEecC-c--eEEEECCCCCeE
Confidence 5777777663 23467899999998765443 336678889999999999988754 4 999987665554
Q ss_pred eeeCcC-----------------CCceEEEEEccCCCEEEEEeCCC----------------------------------
Q 042434 347 AWRGTR-----------------IPKVLDLAVTPDGENLISVLSDK---------------------------------- 375 (517)
Q Consensus 347 ~~~~~~-----------------~~~i~~~~~~~~~~~l~~~~~dg---------------------------------- 375 (517)
.+.... .+.-..+.||||+++|+....|.
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np 156 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNP 156 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCC
Confidence 443322 12335688999999888664431
Q ss_pred --cEEEEECCCceEEe-------eccCCCeeEEEEcCCCCEEEEEeC--CC---eEEEEEcCCCCccceEEeCcccCce-
Q 042434 376 --DIRILNLGTYAERV-------ISEEHPITSLSVSVDCKNFIVNLN--SQ---EIHMWDVAGKWEKPFKYTGHSQNKY- 440 (517)
Q Consensus 376 --~i~i~d~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~--d~---~i~~~d~~~~~~~~~~~~~~~~~~~- 440 (517)
.+.++|+.+++... .....-+..+.|.++++.+++... +. .+.++|..++............-..
T Consensus 157 ~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~ 236 (353)
T PF00930_consen 157 RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV 236 (353)
T ss_dssp EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence 24445555544211 122335778899999884444332 22 4666777654222222111111000
Q ss_pred EEEeecC-CCCCcEEEEecCCC--cEEEEecCCCceeEEecCCCCCeeE-EEecCCCCcEEEEeeCC
Q 042434 441 VIRSCFG-GLDGTFIASGSENS--QIYIWNRRNSKPIEILSGHSMTVNC-VSWNPKRPKMLASASDD 503 (517)
Q Consensus 441 ~i~~~~~-s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~l~s~~~d 503 (517)
.-...++ ..++.++.....|| .|++++...+.. ..+....-.|+. +.|++++..+++++..+
T Consensus 237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~ 302 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGD 302 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSG
T ss_pred ecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCC
Confidence 0011122 34555666666777 466667665553 355545566755 67888875666676653
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.38 E-value=0.00021 Score=70.01 Aligned_cols=182 Identities=15% Similarity=0.047 Sum_probs=114.2
Q ss_pred ECCCCCeEEEE-eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCce--eEEEEeCCCCeeEeeeCc
Q 042434 275 WSPDDTKLLTC-GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEK--GIFMCDCDGNEIKAWRGT 351 (517)
Q Consensus 275 ~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v--~i~~~~~~~~~~~~~~~~ 351 (517)
++|||+.+... -..+.+.+.|.++.+...++.-.. ....++++|+|+++++.+.+... .+...+....
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~-------- 270 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER-------- 270 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccC--------
Confidence 45566555332 234577888888877766654322 44678899999999888643321 1222222111
Q ss_pred CCCceEEE------EEccCCCEEEEEeCCCcEEEEECCC-----ce-EEeeccCCCeeEEEEcCCCCEEEEEeC-CCeEE
Q 042434 352 RIPKVLDL------AVTPDGENLISVLSDKDIRILNLGT-----YA-ERVISEEHPITSLSVSVDCKNFIVNLN-SQEIH 418 (517)
Q Consensus 352 ~~~~i~~~------~~~~~~~~l~~~~~dg~i~i~d~~~-----~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~ 418 (517)
..+..+ .+.++|++... .++.|.+.|.++ .. ...+........+.++|||+++++++. ++++.
T Consensus 271 --d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVS 346 (635)
T PRK02888 271 --DWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVT 346 (635)
T ss_pred --ceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEE
Confidence 111111 33457776665 367899999998 33 566677888899999999999888776 88999
Q ss_pred EEEcCCCCccc-------eEEeCccc-CceEEEeecCCCCCcEEEEecCCCcEEEEecCC
Q 042434 419 MWDVAGKWEKP-------FKYTGHSQ-NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN 470 (517)
Q Consensus 419 ~~d~~~~~~~~-------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 470 (517)
++|+.+..... ..+.+... +...+.. .|.++|+...+-.-|..|..||+.+
T Consensus 347 VIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHT-aFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 347 VIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHT-AFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEChhhhhhhhccCCccceEEEeeccCCCcceE-EECCCCCEEEeEeecceeEEEehHH
Confidence 99997642100 01111111 1111222 3378888888888899999999875
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.36 E-value=0.00017 Score=70.72 Aligned_cols=224 Identities=9% Similarity=0.029 Sum_probs=122.7
Q ss_pred CCCeEEEEeC-CCeEEEEECCCCcEEEEeC-CCCCceEEEEEe--CCCCeEEEeeC-------CCc---------eeEEE
Q 042434 278 DDTKLLTCGN-AEVLKLWDVETGICKHTFG-DHGFIVSSCAWF--PDSKRLVCGSS-------DTE---------KGIFM 337 (517)
Q Consensus 278 ~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~--~~~~~l~~~~~-------d~~---------v~i~~ 337 (517)
||++|+.-.. +..|..-++...++-+.+. .....+..+.+- |+..++++++. ||. -.+..
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6778887654 4566666666555444332 122233333332 44444444332 222 01334
Q ss_pred EeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEeCCC----cEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEe
Q 042434 338 CDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVLSDK----DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNL 412 (517)
Q Consensus 338 ~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 412 (517)
+|..+..+ ...... +....+.++++|+++++.+.+. ++...+.............. .-.+.++|++..+
T Consensus 220 ID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--iea~vkdGK~~~V-- 293 (635)
T PRK02888 220 VDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--IEEAVKAGKFKTI-- 293 (635)
T ss_pred EECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--HHHhhhCCCEEEE--
Confidence 44443222 111111 2456788899999999888432 23333222211000000000 0133457777666
Q ss_pred CCCeEEEEEcCC----CCccceEEeCcccCceEEEeecCCCCCcEEEEecC-CCcEEEEecCCCce------------eE
Q 042434 413 NSQEIHMWDVAG----KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE-NSQIYIWNRRNSKP------------IE 475 (517)
Q Consensus 413 ~d~~i~~~d~~~----~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~------------~~ 475 (517)
.++.|.++|.++ .......+... .. ..-+.++|||+++++++. +.++.|.|+.+.+. +.
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIPVG-Ks---PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva 369 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVPVP-KN---PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA 369 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEECC-CC---ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence 367899999876 22333332221 11 223334899998877665 78999999987552 33
Q ss_pred EecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 476 ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 476 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
+..- ...-...+|.++| +.+.|.--|..|..|++..
T Consensus 370 evev-GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 370 EPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eecc-CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 3332 2334577899998 7888999999999999875
No 338
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.35 E-value=0.0017 Score=58.99 Aligned_cols=262 Identities=11% Similarity=0.121 Sum_probs=148.8
Q ss_pred CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC----------CCeEEEEECCCCcEEEEeCCCC----
Q 042434 244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN----------AEVLKLWDVETGICKHTFGDHG---- 309 (517)
Q Consensus 244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~---- 309 (517)
+.+.|+|.++++ ....+. .+-.-.+..+||++.+++++. .-.|.+||..+-.....+.-..
T Consensus 17 ~rv~viD~d~~k---~lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGK---LLGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTE---EEEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCc---EEEEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 478888876553 233332 122334678999999887532 3379999999987776543221
Q ss_pred ---CceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCC-c
Q 042434 310 ---FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT-Y 385 (517)
Q Consensus 310 ---~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~ 385 (517)
......+++.|++++++....-.-.|-+.|+..+.+....... .+..+ +-...+.+.+.+.||.+.-..+.. +
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~i-yP~~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLI-YPSGNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEE-EEEETTEEEEEETTSCEEEEEETSTS
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEE-EecCCCceEEEecCCceEEEEECCCC
Confidence 1122367888999888766555445888888876654322221 11111 111224678888999998888863 3
Q ss_pred eEE-----ee-ccCCC-eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc-eEEeCc---------ccCceEEEeecCC
Q 042434 386 AER-----VI-SEEHP-ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP-FKYTGH---------SQNKYVIRSCFGG 448 (517)
Q Consensus 386 ~~~-----~~-~~~~~-i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~---------~~~~~~i~~~~~s 448 (517)
+.. .+ ....+ ...-++...+..++..+.+|.|+-.|+....... ..+.-. ..+.+.+ ++++
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~--~A~~ 246 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQL--IAYH 246 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS---EEEE
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceee--eeec
Confidence 311 11 11112 2233445556667778889999998887652111 111110 0111111 1223
Q ss_pred CCCcEEEEec---CCC-------cEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEe-eCCCcEEEeCCCCCCC
Q 042434 449 LDGTFIASGS---ENS-------QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASA-SDDHTIRIWGPCQSSE 516 (517)
Q Consensus 449 ~~~~~l~~~~---~dg-------~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~-~~dg~v~iw~~~~~~~ 516 (517)
+..+.|++.- .+| .|.++|+.+++.+..+.. ..++.+|..+.+..-+|++. ..++.+.+||..+|+.
T Consensus 247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 3333333321 111 588889999999999874 35688999998774466554 4689999999999875
No 339
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=6.1e-06 Score=73.51 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=93.5
Q ss_pred CchHHHHHHHHHHHhhcChHHHHHHHhhhcCee-e-cC---hhHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchh
Q 042434 14 IKKYEFVRVVVQCLYSLGYQKSASCLESESGVS-Y-KS---KGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFP 88 (517)
Q Consensus 14 ~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~-~-~~---~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~ 88 (517)
-.+.-+.|+|..||.-+||-+||..|-++|.+. + +. ..+..+++++++|+...++.--+.-.-.-......+-|.
T Consensus 113 w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~ 192 (389)
T KOG0396|consen 113 WPRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQ 192 (389)
T ss_pred hHHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhH
Confidence 357788999999999999999999999999874 1 11 345678889999998877654442211111223456788
Q ss_pred hhhhhhhHhhhcCChhHHHHHHHhhcccCCC-ChhHHhhhhhccccc
Q 042434 89 VFKQCFLEYLNRGDDSLALNVLRKRVSSLQM-SKDTIHNLASSMLCL 134 (517)
Q Consensus 89 ~~~~~~~el~~~~~~~~a~~~lr~~~~~~~~-~~~~~~~l~~~~~~~ 134 (517)
+..|+|.||++.+++.+|+.+.++.+.|... ....++....++.++
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~ 239 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFP 239 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCc
Confidence 9999999999999999999999999998776 556777777777776
No 340
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.31 E-value=0.0013 Score=64.27 Aligned_cols=243 Identities=15% Similarity=0.145 Sum_probs=136.0
Q ss_pred EEEEEECCCCCeEEEE-eCCC----eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCC---------ceeE
Q 042434 270 VSFVAWSPDDTKLLTC-GNAE----VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT---------EKGI 335 (517)
Q Consensus 270 v~~l~~s~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~---------~v~i 335 (517)
+....++|||+++|.+ +..| .++++|+++|+.+...- .......+.|.++++.|+....+. .-.|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-cccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467899999998865 3334 69999999997765321 111223499999998887776554 4458
Q ss_pred EEEeCCCCee---EeeeCcCCCc-eEEEEEccCCCEEEEEeCC----CcEEEEECCCc-----e-EEeeccCCCeeEEEE
Q 042434 336 FMCDCDGNEI---KAWRGTRIPK-VLDLAVTPDGENLISVLSD----KDIRILNLGTY-----A-ERVISEEHPITSLSV 401 (517)
Q Consensus 336 ~~~~~~~~~~---~~~~~~~~~~-i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~-----~-~~~~~~~~~i~~~~~ 401 (517)
+.+...+... ..+....... ...+..++|+++++..... ..+.+.|+... . .........+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 8888875432 3333433334 6788999999987764432 35888898874 2 233333333333222
Q ss_pred cCCCCEEEEEeC---CCeEEEEEcCCCCc--cceEEeCcccCceEEEeecCCCCCcEEEEecCCC--cEEEEecCCCcee
Q 042434 402 SVDCKNFIVNLN---SQEIHMWDVAGKWE--KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS--QIYIWNRRNSKPI 474 (517)
Q Consensus 402 s~~~~~l~~~~~---d~~i~~~d~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~ 474 (517)
+..+.+++.... .+.|...++..... ....+..+..... +..+.. -.+.+++....++ .|+++++..+...
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~-l~~~~~-~~~~Lvl~~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS-LEDVSL-FKDYLVLSYRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE-EEEEEE-ETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCcee-EEEEEE-ECCEEEEEEEECCccEEEEEECCCCcEE
Confidence 223333333322 35677777766532 1113333333222 222221 1344555555555 6889998844444
Q ss_pred EEecC-CCCCeeEEEecCCCCcEEEEeeC---CCcEEEeCCCCCC
Q 042434 475 EILSG-HSMTVNCVSWNPKRPKMLASASD---DHTIRIWGPCQSS 515 (517)
Q Consensus 475 ~~~~~-h~~~v~~v~~~~~~~~~l~s~~~---dg~v~iw~~~~~~ 515 (517)
..+.. -.+.|..+...++++.+.++.+. -+++.-||+.+++
T Consensus 363 ~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 363 REIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred eeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 44433 34556777777777666666554 3578888888775
No 341
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.31 E-value=0.00096 Score=66.39 Aligned_cols=264 Identities=13% Similarity=0.085 Sum_probs=145.5
Q ss_pred CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC------CEE--EEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe
Q 042434 234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN------PVS--FVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF 305 (517)
Q Consensus 234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~------~v~--~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 305 (517)
+..++.++.++.+.-.|..+++.. -.+..... .+. .+... ++..++.++.+|.|..+|.++|+.+..+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~---W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVL---WRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhh---ceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence 345666777888888888766432 22211111 010 01111 2267888889999999999999998877
Q ss_pred CCCCCc-----eE-EEEEeCCCCeEEEeeC---------CCceeEEEEeCCC-CeeEeeeCcCC----------------
Q 042434 306 GDHGFI-----VS-SCAWFPDSKRLVCGSS---------DTEKGIFMCDCDG-NEIKAWRGTRI---------------- 353 (517)
Q Consensus 306 ~~~~~~-----v~-~i~~~~~~~~l~~~~~---------d~~v~i~~~~~~~-~~~~~~~~~~~---------------- 353 (517)
...... +. +..+. +..++.++. ++. ++-+|..+ +.+-.......
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~--v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGA--LRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG 212 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcE--EEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence 543221 11 11222 244555543 444 77777764 33322221110
Q ss_pred ---Cce-EEEEEccCCCEEEEEeCCC------------------cEEEEECCCceEEee-ccC-CCe------eEEEEc-
Q 042434 354 ---PKV-LDLAVTPDGENLISVLSDK------------------DIRILNLGTYAERVI-SEE-HPI------TSLSVS- 402 (517)
Q Consensus 354 ---~~i-~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~-~~~-~~i------~~~~~s- 402 (517)
+.+ ....+.+.+..+++++.++ .+.-+|..+++..-. ... ... ....+.
T Consensus 213 ~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~ 292 (488)
T cd00216 213 PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLAD 292 (488)
T ss_pred CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEe
Confidence 001 1234555567788887665 688899988883222 111 100 011111
Q ss_pred ---CCCC---EEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe------------------c
Q 042434 403 ---VDCK---NFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG------------------S 458 (517)
Q Consensus 403 ---~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~------------------~ 458 (517)
-++. .+++++.+|.+..+|..++ +.......... ....+| ..++.+ .
T Consensus 293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG-~~~W~~~~~~~------~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~ 363 (488)
T cd00216 293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTG-KLISARPEVEQ------PMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKP 363 (488)
T ss_pred ccccCCCeeEEEEEECCCceEEEEECCCC-cEeeEeEeecc------ccccCC--ceEEEccccccccCcccccCCCCCC
Confidence 1333 5778888999999999887 44433321100 011123 223222 2
Q ss_pred CCCcEEEEecCCCceeEEecCCC--------CCe--eEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434 459 ENSQIYIWNRRNSKPIEILSGHS--------MTV--NCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV 517 (517)
Q Consensus 459 ~dg~i~iwd~~~~~~~~~~~~h~--------~~v--~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v 517 (517)
.+|.+.-.|+.+|+.+-...... .+. ..++. .+ .+++.++.||.|+.+|..+|+++
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g-~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AG-NLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cC-CeEEEECCCCeEEEEECCCCcee
Confidence 46788889999998777665321 111 12222 23 46888889999999999998763
No 342
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.003 Score=60.61 Aligned_cols=261 Identities=13% Similarity=0.089 Sum_probs=162.8
Q ss_pred cEEEEEECCCCCEEEEee-CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EEeCCCeEEEEECCCCcE
Q 042434 224 EVWFVQFSNNGEYLASSS-SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVETGIC 301 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~ 301 (517)
....+...|++..+.... ....+...+.. .. ............-..++.++.++.+. +...++.|.+.|..+.+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n--~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SN--TVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cc--eeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 455677888885444433 22244444432 11 11111111113445778888887554 445568999999888777
Q ss_pred EEEeCCCCCceEEEEEeCCCCeEEEeeCC-CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEEE
Q 042434 302 KHTFGDHGFIVSSCAWFPDSKRLVCGSSD-TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIRI 379 (517)
Q Consensus 302 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i 379 (517)
........ ....++++|+++.+.++... +.-.+...|..+..+.........+ ..++++|+|+.+++.. .++.|.+
T Consensus 109 ~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~v 186 (381)
T COG3391 109 LGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSV 186 (381)
T ss_pred eeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEE
Confidence 76663322 66789999999888877664 2334888888866554442222223 8899999999766665 7889999
Q ss_pred EECCCceEEe------eccCCCeeEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCC
Q 042434 380 LNLGTYAERV------ISEEHPITSLSVSVDCKNFIVNLNS---QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLD 450 (517)
Q Consensus 380 ~d~~~~~~~~------~~~~~~i~~~~~s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 450 (517)
+|........ .........+.++|+|.++.+.... +.+...|................. ......+|+
T Consensus 187 i~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~---~~~v~~~p~ 263 (381)
T COG3391 187 IDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGA---PRGVAVDPA 263 (381)
T ss_pred EeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCC---CCceeECCC
Confidence 9977766442 3344556789999999977766554 588888887652222212211111 112233799
Q ss_pred CcEEEEecC-CCcEEEEecCCCceeEEecCCC---CCeeEEEecCC
Q 042434 451 GTFIASGSE-NSQIYIWNRRNSKPIEILSGHS---MTVNCVSWNPK 492 (517)
Q Consensus 451 ~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~ 492 (517)
|.++.+... .+.+.+-|..+........... ..+..+++.+.
T Consensus 264 g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 264 GKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred CCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 999888844 4889999998887777655332 23455555543
No 343
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.29 E-value=3.2e-05 Score=73.75 Aligned_cols=119 Identities=24% Similarity=0.289 Sum_probs=83.1
Q ss_pred CcEEEEEECC-CCCEEEEe----eCCCcE----EEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434 223 NEVWFVQFSN-NGEYLASS----SSDCSA----IIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL 293 (517)
Q Consensus 223 ~~v~~~~~s~-~~~~l~t~----~~dg~i----~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 293 (517)
....++.||. +...+.|. +.+|.+ .+|++..++-.....+--.....|.|++++|+...++.|+.||+|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3446788887 44445443 334543 45666433211122222356789999999999999999999999999
Q ss_pred EECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee
Q 042434 294 WDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI 345 (517)
Q Consensus 294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~ 345 (517)
||...+... +....-.++.++|+|+|..+++|+..|. +..||..-.++
T Consensus 286 yD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGe--lQ~FD~ALspi 333 (545)
T PF11768_consen 286 YDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGE--LQCFDMALSPI 333 (545)
T ss_pred EEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCce--EEEEEeecCcc
Confidence 998766433 3344566789999999999999999999 77777654333
No 344
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=98.28 E-value=1.2e-06 Score=51.14 Aligned_cols=32 Identities=34% Similarity=0.634 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHhhhcCee
Q 042434 15 KKYEFVRVVVQCLYSLGYQKSASCLESESGVS 46 (517)
Q Consensus 15 ~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~ 46 (517)
.+.++.++|+|||..+||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999863
No 345
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=3e-05 Score=76.42 Aligned_cols=227 Identities=13% Similarity=0.149 Sum_probs=137.0
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-CcE--
Q 042434 225 VWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET-GIC-- 301 (517)
Q Consensus 225 v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~-- 301 (517)
+++++|+|..-.|+.|-.-|.+.+|...+. +.......|+.+|..+.||++|..++++..-|.+.+|...- |+.
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~---e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~ 138 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQT 138 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCc---eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccccc
Confidence 456999999999999999999999998544 33344566999999999999999999999999999997652 110
Q ss_pred ---------------EEEeCC---------------CCCceE-EEEE-------------eCCCCeEEEeeCCCceeEEE
Q 042434 302 ---------------KHTFGD---------------HGFIVS-SCAW-------------FPDSKRLVCGSSDTEKGIFM 337 (517)
Q Consensus 302 ---------------~~~~~~---------------~~~~v~-~i~~-------------~~~~~~l~~~~~d~~v~i~~ 337 (517)
...+.. ....+- -.-| .|+|..|+.++.+|+ |+.
T Consensus 139 ~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~Gt--Vyy 216 (1416)
T KOG3617|consen 139 SNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGT--VYY 216 (1416)
T ss_pred chhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCce--EEE
Confidence 001100 000000 0011 356778888999998 888
Q ss_pred EeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC------------------------------CCcEEEEEC----C
Q 042434 338 CDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS------------------------------DKDIRILNL----G 383 (517)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------------------dg~i~i~d~----~ 383 (517)
.|..+.+......... ..+-|.+...-+++... .|.|.+=.. +
T Consensus 217 vdq~g~~~~V~k~dS~---vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr 293 (1416)
T KOG3617|consen 217 VDQNGRQRTVHKLDSE---VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLR 293 (1416)
T ss_pred EcCCCcEEEEEEccch---HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccccc
Confidence 8877766554433221 11111111111111111 111111110 0
Q ss_pred CceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC------CccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434 384 TYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK------WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG 457 (517)
Q Consensus 384 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 457 (517)
.....-...+..+.+++++..+..+..|...|.+.+|--... ......+.+.......|+.+.|+|-.+.++.-
T Consensus 294 ~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn 373 (1416)
T KOG3617|consen 294 KSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVN 373 (1416)
T ss_pred CCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhh
Confidence 001122234557899999999999999999999999964221 12233444555545567777777765555544
Q ss_pred cC
Q 042434 458 SE 459 (517)
Q Consensus 458 ~~ 459 (517)
+.
T Consensus 374 ~~ 375 (1416)
T KOG3617|consen 374 TE 375 (1416)
T ss_pred hh
Confidence 43
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.27 E-value=0.0012 Score=58.34 Aligned_cols=201 Identities=12% Similarity=0.141 Sum_probs=114.9
Q ss_pred EeCCCCCceEEEEEeCCCCeEEE-eeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEEC
Q 042434 304 TFGDHGFIVSSCAWFPDSKRLVC-GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL 382 (517)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 382 (517)
.+.+-...+..++|.|+.+.|++ ....+. |+.++..|+.++.+.....+....+++..++.++++.-.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~--i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGE--IYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTE--EEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCE--EEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 44455566999999998665554 455555 889999988888877666668899999988877777767899999988
Q ss_pred CCce----E---E--ee----ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC--CCccceE--EeCcc---cCceEE
Q 042434 383 GTYA----E---R--VI----SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG--KWEKPFK--YTGHS---QNKYVI 442 (517)
Q Consensus 383 ~~~~----~---~--~~----~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~--~~~~~~~--~~~~~---~~~~~i 442 (517)
.... . . .. ..+..+..++|+|.++.++++-...-..+|.+.. ....... ..... .....+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 3321 0 1 11 1334589999999988888887776667777654 1111111 11111 111123
Q ss_pred EeecCCC-CCcEEEEecCCCcEEEEecCCCceeEEecCCC---------CCeeEEEecCCCCcEEEEeeCCCcEEEe
Q 042434 443 RSCFGGL-DGTFIASGSENSQIYIWNRRNSKPIEILSGHS---------MTVNCVSWNPKRPKMLASASDDHTIRIW 509 (517)
Q Consensus 443 ~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~v~~~~~~~~~l~s~~~dg~v~iw 509 (517)
..+.++| .|.+++....+..|..+| .+|+++..+.-.. ...-.|+|.++| .+ ...+.-+..+++
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~L-YIvsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NL-YIVSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---E-EEEETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCC-CE-EEEcCCceEEEe
Confidence 3333344 567778888888999999 6688776654222 246789999999 44 444565555544
No 347
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.25 E-value=0.0037 Score=57.31 Aligned_cols=228 Identities=15% Similarity=0.129 Sum_probs=128.3
Q ss_pred CCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe------
Q 042434 232 NNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF------ 305 (517)
Q Consensus 232 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------ 305 (517)
..++.|+.|+.+| +.+++........ ... +...|..+...|+-+.+++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~--~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPT--RIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccce--eEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3577899999998 8899883222221 221 233499999999877777765 599999998754433211
Q ss_pred --------CCCCCceEEEE--EeCCCCeEEEeeCCCceeEEEEeCCC----CeeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434 306 --------GDHGFIVSSCA--WFPDSKRLVCGSSDTEKGIFMCDCDG----NEIKAWRGTRIPKVLDLAVTPDGENLISV 371 (517)
Q Consensus 306 --------~~~~~~v~~i~--~~~~~~~l~~~~~d~~v~i~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 371 (517)
......+...+ -...+...++......+.++.|.... ...+.+... ..+.+++|. ++.++.|
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GNKICVG 154 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CCEEEEE
Confidence 01122333333 12234444445555577788888742 244444444 378888888 5577777
Q ss_pred eCCCcEEEEECCCce-EEeecc-------------CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc
Q 042434 372 LSDKDIRILNLGTYA-ERVISE-------------EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ 437 (517)
Q Consensus 372 ~~dg~i~i~d~~~~~-~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 437 (517)
..++ ..+.|+.++. ...... ..++..+.+. ++.++++ . +..-.+.|..+.......+.-...
T Consensus 155 ~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~-~-~~~g~fv~~~G~~~r~~~i~W~~~ 230 (275)
T PF00780_consen 155 TSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC-Y-DNIGVFVNKNGEPSRKSTIQWSSA 230 (275)
T ss_pred eCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE-e-cceEEEEcCCCCcCcccEEEcCCc
Confidence 6544 8888988665 222211 1123333333 3444443 2 334445555443222111211111
Q ss_pred CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCC
Q 042434 438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH 480 (517)
Q Consensus 438 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 480 (517)
. ....+ ...||++.+.++ |.||++.++++++++...
T Consensus 231 p---~~~~~---~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 231 P---QSVAY---SSPYLIAFSSNS-IEVRSLETGELVQTIPLP 266 (275)
T ss_pred h---hEEEE---ECCEEEEECCCE-EEEEECcCCcEEEEEECC
Confidence 1 11111 234777766654 999999999999988754
No 348
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.24 E-value=0.00082 Score=61.55 Aligned_cols=221 Identities=17% Similarity=0.164 Sum_probs=128.3
Q ss_pred EECCCCCeE-EEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-Eeee--
Q 042434 274 AWSPDDTKL-LTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWR-- 349 (517)
Q Consensus 274 ~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~-- 349 (517)
.|.++...| .+--..+.|.-|+..+++.. .+ .....+.++.....+..|+++... ++.++...... ..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~-~~p~~~~~~~~~d~~g~Lv~~~~g----~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VF-PSPGGFSSGALIDAGGRLIACEHG----VRLLDPDTGGKITLLAEP 104 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EE-ECCCCcccceeecCCCeEEEEccc----cEEEeccCCceeEEeccc
Confidence 467777644 44455778999998776432 33 223334555555455556555544 44555432222 2221
Q ss_pred --CcCCCceEEEEEccCCCEEEEEeC-----------CCcEEEEECCCceEEeecc-CCCeeEEEEcCCCCEEEEEeC-C
Q 042434 350 --GTRIPKVLDLAVTPDGENLISVLS-----------DKDIRILNLGTYAERVISE-EHPITSLSVSVDCKNFIVNLN-S 414 (517)
Q Consensus 350 --~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~-d 414 (517)
.......+.....|+|.+.+.... -|.++.+|........... -...+.++||||++.++.+.. .
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 222235678889999987665444 1346666653333333333 556789999999988777755 5
Q ss_pred CeEEEEEcCC--C---CccceEEeCcccCceEEEeecCCCCCcEEEEecCCC-cEEEEecCCCceeEEecCCCCCeeEEE
Q 042434 415 QEIHMWDVAG--K---WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS-QIYIWNRRNSKPIEILSGHSMTVNCVS 488 (517)
Q Consensus 415 ~~i~~~d~~~--~---~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~v~ 488 (517)
+.|.-|++.. . ............. ....++...+|.+-+++..+| .|.+|+.. |+++..+.-+...+++++
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G--~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPG--LPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCC--CCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 7888888752 1 0111111111111 011122245677765555554 89999988 999999887778888999
Q ss_pred ec-CCCCcEEEEeeCC
Q 042434 489 WN-PKRPKMLASASDD 503 (517)
Q Consensus 489 ~~-~~~~~~l~s~~~d 503 (517)
|- |+...+++|+...
T Consensus 262 FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 262 FGGPDLNTLYITSARS 277 (307)
T ss_pred EeCCCcCEEEEEecCC
Confidence 85 4444566666555
No 349
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.24 E-value=0.0008 Score=64.06 Aligned_cols=233 Identities=15% Similarity=0.104 Sum_probs=125.9
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCe----------------------------------------eeEEEEe
Q 042434 224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSK----------------------------------------LTLKHTL 263 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~----------------------------------------~~~~~~~ 263 (517)
.|+.+.|+++..-|+.|...|.|.||.+...+. +.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 588999999988899999999999997643211 2233334
Q ss_pred ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe--CC------CCCceEEEEEeC-----CC---CeEEEe
Q 042434 264 RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF--GD------HGFIVSSCAWFP-----DS---KRLVCG 327 (517)
Q Consensus 264 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~------~~~~v~~i~~~~-----~~---~~l~~~ 327 (517)
....++|++++.| |=-++|.|..+|.+.|.|++....+..- .. ....|+++.|.. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 4557899999998 4459999999999999999887776642 12 345688888863 33 378899
Q ss_pred eCCCceeEEEEeCCC-C--eeE--eeeCcCCCceEEEE-EccC--------------------CCEEEEEeCCCcEEEEE
Q 042434 328 SSDTEKGIFMCDCDG-N--EIK--AWRGTRIPKVLDLA-VTPD--------------------GENLISVLSDKDIRILN 381 (517)
Q Consensus 328 ~~d~~v~i~~~~~~~-~--~~~--~~~~~~~~~i~~~~-~~~~--------------------~~~l~~~~~dg~i~i~d 381 (517)
+..|.+.++...... . .+. .......+++..+. ++.+ -+.+++...+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999996666555421 1 111 11112223444443 3211 12355556678899999
Q ss_pred CCCceEEeeccCC--CeeEEEEc-----CCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcc-cCceEEEeecCCCCCcE
Q 042434 382 LGTYAERVISEEH--PITSLSVS-----VDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS-QNKYVIRSCFGGLDGTF 453 (517)
Q Consensus 382 ~~~~~~~~~~~~~--~i~~~~~s-----~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~ 453 (517)
..+.+........ ....+.+- ..+..|++-..+|.+++|.+..- +.+....-.. .....+....++++|..
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~l~~~~d~~~~~~ssis~~Gdi 320 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVSLPPPLDSRRLSSSSISRNGDI 320 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-hHhhcccCCCccccccccccEECCCCCE
Confidence 9877632222233 23344442 35666888889999999999875 3333333211 01111112223567776
Q ss_pred EEEec
Q 042434 454 IASGS 458 (517)
Q Consensus 454 l~~~~ 458 (517)
++-.+
T Consensus 321 ~~~~g 325 (395)
T PF08596_consen 321 FYWTG 325 (395)
T ss_dssp EEE-S
T ss_pred EEEeC
Confidence 65544
No 350
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.19 E-value=6.7e-07 Score=85.00 Aligned_cols=198 Identities=20% Similarity=0.221 Sum_probs=125.7
Q ss_pred cCcEEEEEECCC--CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC-CCCeEEEEe----CCCeEEEE
Q 042434 222 KNEVWFVQFSNN--GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP-DDTKLLTCG----NAEVLKLW 294 (517)
Q Consensus 222 ~~~v~~~~~s~~--~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~----~dg~i~iw 294 (517)
...+.|++++.+ ...++.|..+|.|-+-.+.....- ......+|..+.++++|++ |.+.||+|- .|..+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 345566666553 357889999999999877533221 1234567888999999998 556777763 35689999
Q ss_pred ECCCC--cEEE--EeCC-CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc-CCCEE
Q 042434 295 DVETG--ICKH--TFGD-HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP-DGENL 368 (517)
Q Consensus 295 d~~~~--~~~~--~~~~-~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l 368 (517)
|+.++ .+.. .|.. ......+++|..+.+++.+|..... +.++|.+.......... ...+..+.+.| .+.++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~--~~ifdlRqs~~~~~svn-Tk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS--VHIFDLRQSLDSVSSVN-TKYVQGITVDPFSPNYF 211 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccch--hhhhhhhhhhhhhhhhh-hhhcccceecCCCCCce
Confidence 99877 2221 2222 3345568899988999999988888 55566553222111111 12466677888 66676
Q ss_pred EEEeCCCcEEEEEC-CCce--EEee-cc----CCCeeEEEEcCCCC-EEEEEe-CCCeEEEEEcCC
Q 042434 369 ISVLSDKDIRILNL-GTYA--ERVI-SE----EHPITSLSVSVDCK-NFIVNL-NSQEIHMWDVAG 424 (517)
Q Consensus 369 ~~~~~dg~i~i~d~-~~~~--~~~~-~~----~~~i~~~~~s~~~~-~l~~~~-~d~~i~~~d~~~ 424 (517)
++- .||.|.+||. +..+ .... .. ...+..++|.|... .+++.+ ..++|++||+..
T Consensus 212 cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 212 CSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 655 4999999994 3322 1111 11 22488999999532 344444 457899999853
No 351
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.19 E-value=0.0077 Score=58.92 Aligned_cols=243 Identities=14% Similarity=0.142 Sum_probs=129.4
Q ss_pred cEEEEEECCCCCEEEEe-eCCC----cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC---------
Q 042434 224 EVWFVQFSNNGEYLASS-SSDC----SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE--------- 289 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~-~~dg----~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--------- 289 (517)
.+...++||+|+++|.+ +..| .+++.|+.++.... ..+... ....+.|.+|++.++....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--DGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE--EEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC--Cccccc--ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 34467899999999865 3334 49999998774332 122211 123399999988876654332
Q ss_pred --eEEEEECCCCcE--EEEeCCCCCc--eEEEEEeCCCCeEEEeeCCCc--eeEEEEeCCCC-----eeEeeeCcCCCce
Q 042434 290 --VLKLWDVETGIC--KHTFGDHGFI--VSSCAWFPDSKRLVCGSSDTE--KGIFMCDCDGN-----EIKAWRGTRIPKV 356 (517)
Q Consensus 290 --~i~iwd~~~~~~--~~~~~~~~~~--v~~i~~~~~~~~l~~~~~d~~--v~i~~~~~~~~-----~~~~~~~~~~~~i 356 (517)
.|+.|++.++.. ...+...... ...+..++|+++++..+..+. -.++..+.... ....+.....+..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 478888877642 2445443332 567889999999876554433 45888888764 3444443333233
Q ss_pred EEEEEccCCCEEEEEe---CCCcEEEEECCCce-----EEeeccCCCeeEEEEcCCCCEEEEEeC-CC--eEEEEEcCCC
Q 042434 357 LDLAVTPDGENLISVL---SDKDIRILNLGTYA-----ERVISEEHPITSLSVSVDCKNFIVNLN-SQ--EIHMWDVAGK 425 (517)
Q Consensus 357 ~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~~ 425 (517)
..+... .+.+++... .++.|...++.... .....+...+.-..+...+++|++... ++ .|.++++..+
T Consensus 281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred EEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence 333333 333433332 23567777877654 244444444444444445556665544 33 6888998722
Q ss_pred CccceEEeCcccCceEEEeecCCCCCcEEE--EecC--CCcEEEEecCCCcee
Q 042434 426 WEKPFKYTGHSQNKYVIRSCFGGLDGTFIA--SGSE--NSQIYIWNRRNSKPI 474 (517)
Q Consensus 426 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~--~~~~--dg~i~iwd~~~~~~~ 474 (517)
............ .+......++++.+. ..|. -++++.||+.+++..
T Consensus 360 -~~~~~~~~p~~g--~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 360 -KESREIPLPEAG--SVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp -EEEEEEESSSSS--EEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred -cEEeeecCCcce--EEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 222222222222 122222233333332 2222 257888888887643
No 352
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.17 E-value=0.0012 Score=61.04 Aligned_cols=224 Identities=15% Similarity=0.095 Sum_probs=116.1
Q ss_pred EECCCCCeEEEEeC-CC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC
Q 042434 274 AWSPDDTKLLTCGN-AE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG 350 (517)
Q Consensus 274 ~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~ 350 (517)
+|.+||+.|+.++. || .+.+.|+.+++..+.-.+.........++|+++.++....+.. ++..|+.+.....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~--l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRS--LRRVDLDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTE--EEEEETTT--EEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCe--EEEEECCcCcEEEEEE
Confidence 57788977665554 54 6778899998876654433232335667788888766555555 8899998876655554
Q ss_pred cCCCceEEEEE--ccCCCEEEEEeC----------------------CCcEEEEECCCce-EEeeccCCCeeEEEEcCCC
Q 042434 351 TRIPKVLDLAV--TPDGENLISVLS----------------------DKDIRILNLGTYA-ERVISEEHPITSLSVSVDC 405 (517)
Q Consensus 351 ~~~~~i~~~~~--~~~~~~l~~~~~----------------------dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~ 405 (517)
.....+-...| +.++..++..-. ...|.-.|+.+++ .........+..+.++|..
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 44444544444 445655443211 1356667888877 5666677788999999976
Q ss_pred CEEEEEeCCC-----eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe-----cCCCcEEEEecCCCceeE
Q 042434 406 KNFIVNLNSQ-----EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG-----SENSQIYIWNRRNSKPIE 475 (517)
Q Consensus 406 ~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-----~~dg~i~iwd~~~~~~~~ 475 (517)
..+++-+..| .-++|-++........+..+.. ...+..=+|.|||..|.-- +.+..|.-+|..+++...
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence 6655554433 1356666544344444444443 4556667789999877642 334567778888886543
Q ss_pred EecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434 476 ILSGHSMTVNCVSWNPKRPKMLASASDD 503 (517)
Q Consensus 476 ~~~~h~~~v~~v~~~~~~~~~l~s~~~d 503 (517)
... ......+--+++| .+++-=|.|
T Consensus 279 ~~~--~p~~~H~~ss~Dg-~L~vGDG~d 303 (386)
T PF14583_consen 279 LME--MPWCSHFMSSPDG-KLFVGDGGD 303 (386)
T ss_dssp EEE--E-SEEEEEE-TTS-SEEEEEE--
T ss_pred EEe--CCceeeeEEcCCC-CEEEecCCC
Confidence 332 2245566678888 565543443
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.16 E-value=0.00024 Score=68.58 Aligned_cols=194 Identities=13% Similarity=0.132 Sum_probs=97.7
Q ss_pred cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC-------------------------CeeeEEEEeccCC-
Q 042434 214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED-------------------------SKLTLKHTLRSHQ- 267 (517)
Q Consensus 214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~-------------------------~~~~~~~~~~~h~- 267 (517)
..+.+....-.+..+.++|+|++++.+ .||...|+..... ......+.+....
T Consensus 24 ~~k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 24 SVKELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp --EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT
T ss_pred EeccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCccccc
Confidence 344444555567788888888888874 4566666653110 0011111111111
Q ss_pred ------CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC
Q 042434 268 ------NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341 (517)
Q Consensus 268 ------~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~ 341 (517)
..+..+-. |..|...+.+ .|.+||+++++.++.+... +|..+.|++++.+++..+.+. +++++-+
T Consensus 103 k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~---i~il~~~ 173 (443)
T PF04053_consen 103 KSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS---IYILKYN 173 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S---EEEEEE-
T ss_pred eEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe---EEEEEec
Confidence 11222211 6667666544 8999999999999998643 389999999999999998775 4444433
Q ss_pred CC------------eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEE
Q 042434 342 GN------------EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNF 408 (517)
Q Consensus 342 ~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l 408 (517)
.. ........ ...|.+.+|..+ .++-.+.. .++. +-.+. ........++.-+.+.++.+.+
T Consensus 174 ~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~l 247 (443)
T PF04053_consen 174 LEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRL 247 (443)
T ss_dssp HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEE
T ss_pred chhcccccccCchhceEEEEEe-cceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEE
Confidence 22 22222221 236888888766 44444444 5655 33344 3333335567777777777778
Q ss_pred EEEeCCCeEEEEEcC
Q 042434 409 IVNLNSQEIHMWDVA 423 (517)
Q Consensus 409 ~~~~~d~~i~~~d~~ 423 (517)
.....++.+..+.+.
T Consensus 248 y~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 248 YLIDRDGNVISYELD 262 (443)
T ss_dssp EEE-TT--EEEEE--
T ss_pred EEEECCCCEEEEEEC
Confidence 888888887777653
No 354
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.15 E-value=9.3e-07 Score=84.08 Aligned_cols=196 Identities=20% Similarity=0.265 Sum_probs=123.2
Q ss_pred ceEEEEEeCCC--CeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccC-CCEEEEEe----CCCcEEEEECC
Q 042434 311 IVSSCAWFPDS--KRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD-GENLISVL----SDKDIRILNLG 383 (517)
Q Consensus 311 ~v~~i~~~~~~--~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~----~dg~i~i~d~~ 383 (517)
.+.|++++-+. ..+++|..+|.|.+.........-...........++++|++- .+.|++|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 45556555433 3677888888854444333222223444445557899999984 45666653 25579999998
Q ss_pred Cce------EEee-ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC-CCcEEE
Q 042434 384 TYA------ERVI-SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTFIA 455 (517)
Q Consensus 384 ~~~------~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~ 455 (517)
+.- ..+. .......+++|..+.+.+++|.....+.++|++........+.... ...++. +| .++|++
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~--vqG~tV---dp~~~nY~c 212 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKY--VQGITV---DPFSPNYFC 212 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhh--ccccee---cCCCCCcee
Confidence 762 1111 2344566889998999999999999999999974322222221111 011222 44 566777
Q ss_pred EecCCCcEEEEe-cCCC-ceeEEecCCCC----CeeEEEecCCCCcEEEEeeCC-CcEEEeCCC
Q 042434 456 SGSENSQIYIWN-RRNS-KPIEILSGHSM----TVNCVSWNPKRPKMLASASDD-HTIRIWGPC 512 (517)
Q Consensus 456 ~~~~dg~i~iwd-~~~~-~~~~~~~~h~~----~v~~v~~~~~~~~~l~s~~~d-g~v~iw~~~ 512 (517)
+-. ||.|.+|| ..+- .++..+..... .+..++|+|..+.++++...| ++|+.+++.
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 665 99999999 3332 23333332222 489999999887788888865 689999875
No 355
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.09 E-value=0.0059 Score=60.82 Aligned_cols=236 Identities=12% Similarity=0.112 Sum_probs=126.6
Q ss_pred CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC--CEEEEEECC--CCCeEEEEe---------CCCeEEEEECCCCcE
Q 042434 235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN--PVSFVAWSP--DDTKLLTCG---------NAEVLKLWDVETGIC 301 (517)
Q Consensus 235 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~--~v~~l~~s~--~~~~l~s~~---------~dg~i~iwd~~~~~~ 301 (517)
..++.++.+|.|.-+|..+++.. -.+..... .-..+.-+| .+..++.++ .+|.+..+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~---W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQV---WKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEe---eeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 57778888999999999877432 22221111 000111112 124455543 367899999999998
Q ss_pred EEEeCCCCC--------------------ce-EEEEEeCCCCeEEEeeCCCc----------------eeEEEEeCCCCe
Q 042434 302 KHTFGDHGF--------------------IV-SSCAWFPDSKRLVCGSSDTE----------------KGIFMCDCDGNE 344 (517)
Q Consensus 302 ~~~~~~~~~--------------------~v-~~i~~~~~~~~l~~~~~d~~----------------v~i~~~~~~~~~ 344 (517)
+..+..... .+ .+.++.+.+..++.++.++. -.++-+|..+..
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 877643211 01 12344445667777776551 127777776443
Q ss_pred eE-eeeCcCC---------C-ceEEEEEccCCC---EEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEE
Q 042434 345 IK-AWRGTRI---------P-KVLDLAVTPDGE---NLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIV 410 (517)
Q Consensus 345 ~~-~~~~~~~---------~-~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 410 (517)
.. ....... . .+..+. .-++. .+++++.+|.+..+|..+++........ ...++.+| ..+++
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~--~~vyv 343 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDP--GLVYL 343 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-ccccccCC--ceEEE
Confidence 32 2221110 0 011111 11333 5778889999999999998832221110 11223333 23333
Q ss_pred E------------------eCCCeEEEEEcCCCCccceEEeCcccC------ceEEEeecCCCCCcEEEEecCCCcEEEE
Q 042434 411 N------------------LNSQEIHMWDVAGKWEKPFKYTGHSQN------KYVIRSCFGGLDGTFIASGSENSQIYIW 466 (517)
Q Consensus 411 ~------------------~~d~~i~~~d~~~~~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~dg~i~iw 466 (517)
+ ..+|.+..+|+.++ +........... ...... ..-..+..|++++.||.|+.+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG-~~~W~~~~~~~~~~~~~g~~~~~~-~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG-KVVWEKREGTIRDSWNIGFPHWGG-SLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCC-cEeeEeeCCccccccccCCcccCc-ceEecCCeEEEECCCCeEEEE
Confidence 2 23567778887766 333332221000 000000 001246788999999999999
Q ss_pred ecCCCceeEEecC
Q 042434 467 NRRNSKPIEILSG 479 (517)
Q Consensus 467 d~~~~~~~~~~~~ 479 (517)
|..+|+.+...+-
T Consensus 422 d~~tG~~lW~~~~ 434 (488)
T cd00216 422 DATTGKELWKFRT 434 (488)
T ss_pred ECCCCceeeEEEC
Confidence 9999999888764
No 356
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.07 E-value=4.4e-06 Score=55.73 Aligned_cols=53 Identities=32% Similarity=0.484 Sum_probs=45.1
Q ss_pred hHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhhhHhhhcCCh
Q 042434 51 GFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDD 103 (517)
Q Consensus 51 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~ 103 (517)
....++..|+.|+|+.|+..++............+.|.+++|+|+|+++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence 46789999999999999999998866544555689999999999999987654
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.01 E-value=0.009 Score=52.83 Aligned_cols=202 Identities=11% Similarity=0.092 Sum_probs=110.7
Q ss_pred EEEeccccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434 215 VQILTEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL 293 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 293 (517)
.+.+.+-...+..++|+|+.+ ++++....+.|..++.. + +......+.+ .+..-.|++..++.++++.-.++.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G-~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G-KVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C-CEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEE
Confidence 346677777899999999755 55566667777666653 3 3222223333 356788999888877777667899999
Q ss_pred EECCCCc------EEEEeC-----CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC--CCCeeEeee-------CcCC
Q 042434 294 WDVETGI------CKHTFG-----DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC--DGNEIKAWR-------GTRI 353 (517)
Q Consensus 294 wd~~~~~------~~~~~~-----~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~--~~~~~~~~~-------~~~~ 353 (517)
+++.... ....+. .+...+-.++|.|.++.|+++-...-..++.++. ....+.... ....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 9883321 111121 2456789999999988888887776666787776 222221111 1122
Q ss_pred CceEEEEEccCCC-EEEEEeCCCcEEEEECCCceEEeeccC----------CCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 042434 354 PKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYAERVISEE----------HPITSLSVSVDCKNFIVNLNSQEIHMW 420 (517)
Q Consensus 354 ~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~d~~i~~~ 420 (517)
..+.++.++|... +++....+..|..+|..........-. .....+++.++|+.++++ ..+..+.|
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 3577889998654 556666677888888554432222111 257889999998655554 44444433
No 358
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.01 E-value=0.017 Score=59.05 Aligned_cols=283 Identities=17% Similarity=0.168 Sum_probs=153.7
Q ss_pred ccCcEEEEEECCCC------CEEEEeeCCCcEEEEEecCCCeeeEEEEecc--CCCCEEEEEECCCCCeEEEEeCCCeEE
Q 042434 221 HKNEVWFVQFSNNG------EYLASSSSDCSAIIWKVLEDSKLTLKHTLRS--HQNPVSFVAWSPDDTKLLTCGNAEVLK 292 (517)
Q Consensus 221 h~~~v~~~~~s~~~------~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~s~~~dg~i~ 292 (517)
-...|.|+.++|-| ++++.|..+..+.+.-...+........+.+ -...|....|-.|..+|.++..||.+.
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALL 608 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEE
Confidence 35789999999842 2788888777766654433322211111211 234466666766789999999999886
Q ss_pred EE--ECCCCcEEEEe--CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEE-Ecc-C-C
Q 042434 293 LW--DVETGICKHTF--GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLA-VTP-D-G 365 (517)
Q Consensus 293 iw--d~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~-~~~-~-~ 365 (517)
-+ |..+|.....- .-...++.--.|+..++.-+.+..|.- ...|..+++.+.....-. .+..++ |+. . .
T Consensus 609 ~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP--~viY~~n~kLv~spls~k--ev~~~c~f~s~a~~ 684 (1096)
T KOG1897|consen 609 YFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRP--TVIYSSNGKLVYSPLSLK--EVNHMCPFNSDAYP 684 (1096)
T ss_pred EEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCC--EEEEecCCcEEEeccchH--HhhhhcccccccCC
Confidence 65 55555432222 223456666667766665555555555 444444444332222111 122221 222 1 2
Q ss_pred CEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCC--------------CeEEEEEcCCCCcc
Q 042434 366 ENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNS--------------QEIHMWDVAGKWEK 428 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------------~~i~~~d~~~~~~~ 428 (517)
..++.+ ..+.+++.-+..-. ............+++.+....+.+.+.. ..++++|-++.
T Consensus 685 d~l~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf--- 760 (1096)
T KOG1897|consen 685 DSLASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTF--- 760 (1096)
T ss_pred ceEEEe-cCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCce---
Confidence 234443 45556666554433 4446666777888888755555554431 13556665432
Q ss_pred ceEEeCcc----cCceEEEeecCCCC-CcEEEEec----------CCCcEEEEecCCCceeEEecCC--CCCeeEEEecC
Q 042434 429 PFKYTGHS----QNKYVIRSCFGGLD-GTFIASGS----------ENSQIYIWNRRNSKPIEILSGH--SMTVNCVSWNP 491 (517)
Q Consensus 429 ~~~~~~~~----~~~~~i~~~~~s~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~h--~~~v~~v~~~~ 491 (517)
..+..|. .....+.++.+..| +.++++|+ ..|.|.+|....+..+.....+ ++.+.++.--
T Consensus 761 -~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f- 838 (1096)
T KOG1897|consen 761 -EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF- 838 (1096)
T ss_pred -eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-
Confidence 1222221 12233444444555 77788775 3588889887774444443322 4666666543
Q ss_pred CCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 492 KRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 492 ~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
+| +++|. -...|++|+..++++
T Consensus 839 ng-kllA~--In~~vrLye~t~~~e 860 (1096)
T KOG1897|consen 839 NG-KLLAG--INQSVRLYEWTTERE 860 (1096)
T ss_pred CC-eEEEe--cCcEEEEEEccccce
Confidence 34 45544 456799999887754
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.01 E-value=0.0026 Score=59.77 Aligned_cols=181 Identities=15% Similarity=0.199 Sum_probs=113.7
Q ss_pred CCEEEEeeC----------CCcEEEEEecCC----CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC
Q 042434 234 GEYLASSSS----------DCSAIIWKVLED----SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG 299 (517)
Q Consensus 234 ~~~l~t~~~----------dg~i~iw~~~~~----~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 299 (517)
..+++.|+. .|.|.++++... .+++.+... ...++|++++-- ++ +|+++. .+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCc
Confidence 468887753 288999999763 244444443 347889998866 34 444443 478999999887
Q ss_pred c-EEEEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC-cCCCceEEEEEccCCCEEEEEeCCCc
Q 042434 300 I-CKHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG-TRIPKVLDLAVTPDGENLISVLSDKD 376 (517)
Q Consensus 300 ~-~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~ 376 (517)
+ ....-. .....+.++... ++++++|.....+.++.|+..+..+..... .....++++.+-++++.+++++.+|.
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 7 443322 223466666665 559999999888888888987665544433 22346888888867679999999999
Q ss_pred EEEEECCCc---------e---EEeeccCCCeeEE---EEcC--CCC------EEEEEeCCCeEEEE
Q 042434 377 IRILNLGTY---------A---ERVISEEHPITSL---SVSV--DCK------NFIVNLNSQEIHMW 420 (517)
Q Consensus 377 i~i~d~~~~---------~---~~~~~~~~~i~~~---~~s~--~~~------~l~~~~~d~~i~~~ 420 (517)
+.++..... . ......+..++++ ++.| .+. .++.++.+|.|...
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 999887531 1 2233445567777 5555 222 37778888887733
No 360
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.00 E-value=1.4e-05 Score=65.06 Aligned_cols=129 Identities=25% Similarity=0.251 Sum_probs=87.2
Q ss_pred HHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhhhHhhhcCChhHHHHHHHhhcccCCC-ChhHHhhhhhc
Q 042434 52 FERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQM-SKDTIHNLASS 130 (517)
Q Consensus 52 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~a~~~lr~~~~~~~~-~~~~~~~l~~~ 130 (517)
...++++|.+|+++.|+..++.....-......+.|.++.|+|+|++..++..+|+.+.|+.+.|... ..+.++.+..+
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~l 84 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMSL 84 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 46789999999999999999877432223346789999999999999999999999999998865554 45566677777
Q ss_pred cccccccc--cccCCcchhhhHHHHHHHHHHHhCCCCCCCC-cchHHHHHHHH
Q 042434 131 MLCLEGMN--LGKIDEGVVLELRKRLLVELERLLPPPEVVP-ERRLEHLVETA 180 (517)
Q Consensus 131 ~~~~~~~~--~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~-~~rl~~l~~~~ 180 (517)
+....... ......-.....|.++...+...+-.....| ...|..++...
T Consensus 85 L~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g 137 (145)
T PF10607_consen 85 LAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAG 137 (145)
T ss_pred HHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 66542211 1111111122567788877777543333333 44555555544
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=4.6e-05 Score=72.92 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=79.4
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEE-EEEECCCCCeEEEEeCCCeEEEEECCCC
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVS-FVAWSPDDTKLLTCGNAEVLKLWDVETG 299 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~-~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 299 (517)
-...|..+.|+|.-.++|++..+|.|.+..++ ++.+.++.-|...++ +++|.|||+.||+|-.||+|++.|+++|
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 45578889999999999999999999999884 455567776777777 9999999999999999999999999999
Q ss_pred cEEEEeC-CCCCceEEEEEeC
Q 042434 300 ICKHTFG-DHGFIVSSCAWFP 319 (517)
Q Consensus 300 ~~~~~~~-~~~~~v~~i~~~~ 319 (517)
..+..+. .....|.++.|.+
T Consensus 95 ~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 95 GRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred Cceeccccccccchheeeccc
Confidence 8877642 3466788888863
No 362
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.97 E-value=0.02 Score=55.38 Aligned_cols=168 Identities=13% Similarity=0.217 Sum_probs=92.4
Q ss_pred cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe-------CCCCCceEEEEE
Q 042434 245 SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF-------GDHGFIVSSCAW 317 (517)
Q Consensus 245 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~i~~ 317 (517)
.|.||+.. |..+ .++.-..+.|.++.|+.+. .|++...||.++++|+. |+....+ .-....+.+..+
T Consensus 62 ~I~iys~s-G~ll---~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSS-GKLL---SSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCC-CCEe---EEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-CceeechhhhccccCccccccccccc
Confidence 48888864 3222 2222223899999999765 55566799999999986 3331111 111222223333
Q ss_pred eCCCCeEEEeeCCCceeEEEEeCCCCeeE--eee---C----cC-CCceEE-EEEccCCCEEEEEeCCCcEEEEECCCce
Q 042434 318 FPDSKRLVCGSSDTEKGIFMCDCDGNEIK--AWR---G----TR-IPKVLD-LAVTPDGENLISVLSDKDIRILNLGTYA 386 (517)
Q Consensus 318 ~~~~~~l~~~~~d~~v~i~~~~~~~~~~~--~~~---~----~~-~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 386 (517)
..+|-.+++ .++. ++.......+.. ... . .+ ...... ..++.+....+....++.+.+.+-....
T Consensus 136 ~~~GivvLt--~~~~--~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 136 YKNGIVVLT--GNNR--FYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred CCCCEEEEC--CCCe--EEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence 335533333 3444 555443332211 110 0 00 000100 2344455555555666666655543321
Q ss_pred EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434 387 ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG 424 (517)
Q Consensus 387 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 424 (517)
. ....+++..+++||++++++.-..+|.+.+.+..-
T Consensus 212 ~--i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 212 Q--IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred c--ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 1 33456899999999999999999999998887543
No 363
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0084 Score=57.56 Aligned_cols=196 Identities=14% Similarity=0.098 Sum_probs=134.6
Q ss_pred CcEEEEEECCCCCEE-EEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC---CCeEEEEECCC
Q 042434 223 NEVWFVQFSNNGEYL-ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN---AEVLKLWDVET 298 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~ 298 (517)
..-..++.++.+..+ ++...+..|.+.|....... ..... ......++++|+++.+..+.. ++++.+.|..+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~---~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t 149 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL---GSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT 149 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCccccee---eEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCC
Confidence 344567888888744 44445688999996544322 22221 225678999999988776655 68999999999
Q ss_pred CcEEEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeee----CcCCCceEEEEEccCCCEEEEEeC
Q 042434 299 GICKHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWR----GTRIPKVLDLAVTPDGENLISVLS 373 (517)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~ 373 (517)
++..........+ ..+++.|+|..++.+. .++. +..++..+..+.... .........+.++|+|..+.+...
T Consensus 150 ~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~--v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 150 NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNT--VSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCe--EEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec
Confidence 9888875433344 8899999999777766 4555 788887766655311 111124567899999997766554
Q ss_pred C---CcEEEEECCCceEEee--ccCC-CeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCC
Q 042434 374 D---KDIRILNLGTYAERVI--SEEH-PITSLSVSVDCKNFIVNLN-SQEIHMWDVAGK 425 (517)
Q Consensus 374 d---g~i~i~d~~~~~~~~~--~~~~-~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~ 425 (517)
. +.+...|..+...... .... ....+..+|+|+.+.+... .+.+.+.|..+.
T Consensus 227 ~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 227 GSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred cCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 4 5899999888772222 2222 5678899999999988855 478888887664
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.93 E-value=0.0049 Score=59.64 Aligned_cols=225 Identities=16% Similarity=0.082 Sum_probs=104.8
Q ss_pred eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC
Q 042434 263 LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG 342 (517)
Q Consensus 263 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~ 342 (517)
+.........+.++|+|+++++ +.||...|+.....+... + +.-...+|.+.+ .+|+-...+.+.|+ -+...
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-~----G~g~~~vw~~~n-~yAv~~~~~~I~I~-kn~~~ 99 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-F----GSGLSFVWSSRN-RYAVLESSSTIKIY-KNFKN 99 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-E----EE-SEEEE-TSS-EEEEE-TTS-EEEE-ETTEE
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-c----CceeEEEEecCc-cEEEEECCCeEEEE-EcCcc
Confidence 3334556789999999999988 557788888744433322 2 233457888844 56666667774442 22222
Q ss_pred CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434 343 NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV 422 (517)
Q Consensus 343 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~ 422 (517)
...+.+.... .+..+.. |..|...+.+ .|.+||..+++......-.++..+.|++++.+++..+.+ .+.+++.
T Consensus 100 ~~~k~i~~~~--~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 100 EVVKSIKLPF--SVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp -TT-----SS---EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred ccceEEcCCc--ccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 2222222221 2333332 7766666544 899999999884444444458999999999999998765 4666554
Q ss_pred CCC---------CccceEEeCc-ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCC
Q 042434 423 AGK---------WEKPFKYTGH-SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK 492 (517)
Q Consensus 423 ~~~---------~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~ 492 (517)
... .......... .. .+.+..|..+ -++++. .. .|+. +-.|+ ..++..-..++.=+.+.|.
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~---~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~~ 243 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISE---RIKSGCWVED-CFIYTT-SN-HLKY--LVNGE-TGIIAHLDKPLYLLGYLPK 243 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S-----SEEEEETT-EEEEE--TT-EEEE--EETTE-EEEEEE-SS--EEEEEETT
T ss_pred cchhcccccccCchhceEEEEEecc---eeEEEEEEcC-EEEEEc-CC-eEEE--EEcCC-cceEEEcCCceEEEEEEcc
Confidence 221 0001111111 11 1223333222 222222 22 4444 22232 1122212456666777776
Q ss_pred CCcEEEEeeCCCcEEEeCCC
Q 042434 493 RPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 493 ~~~~l~s~~~dg~v~iw~~~ 512 (517)
. ..+.....|+.|..+.+.
T Consensus 244 ~-~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 244 E-NRLYLIDRDGNVISYELD 262 (443)
T ss_dssp T-TEEEEE-TT--EEEEE--
T ss_pred C-CEEEEEECCCCEEEEEEC
Confidence 5 567778888888877654
No 365
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.91 E-value=0.0021 Score=64.71 Aligned_cols=217 Identities=13% Similarity=0.091 Sum_probs=119.4
Q ss_pred eEEEEECCCCcEEEEeCC-CCCceEEEEEeCCCCeEEEeeCC-Cc---eeEEEEeCCCCeeEeeeCcCCCceEEEEEccC
Q 042434 290 VLKLWDVETGICKHTFGD-HGFIVSSCAWFPDSKRLVCGSSD-TE---KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD 364 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d-~~---v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 364 (517)
.+..+|..++.......- ....-.+++.. ++...++|+.| |. -.++.||...+.-.....-.......-...-+
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~ 380 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD 380 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEEC
Confidence 577788877754432221 12222334443 56788889888 32 24888888866533322222212222222336
Q ss_pred CCEEEEEeCCC-----cEEEEECCCce-EEeeccCCCeeEEEE-cCCCCEEEEEeCCC------eEEEEEcCCC-Cccce
Q 042434 365 GENLISVLSDK-----DIRILNLGTYA-ERVISEEHPITSLSV-SVDCKNFIVNLNSQ------EIHMWDVAGK-WEKPF 430 (517)
Q Consensus 365 ~~~l~~~~~dg-----~i~i~d~~~~~-~~~~~~~~~i~~~~~-s~~~~~l~~~~~d~------~i~~~d~~~~-~~~~~ 430 (517)
|...++|+.|| ++-.||..+.+ ............... .-+|...++|+.++ .+..||..+. |....
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~ 460 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA 460 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC
Confidence 77888998887 57889988877 222222223333332 33677777777554 4677887553 22222
Q ss_pred EEeCcccCceEEEeecCCCCCcEEEEecCCCc-----EEEEecCCCceeEE--ecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434 431 KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ-----IYIWNRRNSKPIEI--LSGHSMTVNCVSWNPKRPKMLASASDD 503 (517)
Q Consensus 431 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~--~~~h~~~v~~v~~~~~~~~~l~s~~~d 503 (517)
........ ...+ .-++.+.+.||.|+. |..||..+.+.... +......+..+.+ ++ .+.+.||.|
T Consensus 461 ~M~~~R~~---~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~-~ly~vGG~~ 532 (571)
T KOG4441|consen 461 PMNTRRSG---FGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GG-KLYAVGGFD 532 (571)
T ss_pred Cccccccc---ceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CC-EEEEEeccc
Confidence 22211111 1111 247888888988873 77888877654332 3323333333333 23 688899988
Q ss_pred C-----cEEEeCCCCCC
Q 042434 504 H-----TIRIWGPCQSS 515 (517)
Q Consensus 504 g-----~v~iw~~~~~~ 515 (517)
| +|..||+.+.+
T Consensus 533 ~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 533 GNNNLNTVECYDPETDT 549 (571)
T ss_pred CccccceeEEcCCCCCc
Confidence 6 47778876643
No 366
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.89 E-value=0.013 Score=56.75 Aligned_cols=188 Identities=9% Similarity=0.096 Sum_probs=92.2
Q ss_pred CCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeE---EEEeccCCCCEEEEEECCCCCeEEEE
Q 042434 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTL---KHTLRSHQNPVSFVAWSPDDTKLLTC 285 (517)
Q Consensus 209 ~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~---~~~~~~h~~~v~~l~~s~~~~~l~s~ 285 (517)
...++.+..+.--.+.|.++.|+.+.. |+.-..||.++++|+.....+.. .....-....+....+..+|-.++
T Consensus 67 s~sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL-- 143 (410)
T PF04841_consen 67 SSSGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL-- 143 (410)
T ss_pred CCCCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEE--
Confidence 344555555544448899999988655 44556899999999852210000 011111112222333443553333
Q ss_pred eCCCeEEEEE-CCCCcEEEEeCCCCC---------ceEE-EEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCC
Q 042434 286 GNAEVLKLWD-VETGICKHTFGDHGF---------IVSS-CAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP 354 (517)
Q Consensus 286 ~~dg~i~iwd-~~~~~~~~~~~~~~~---------~v~~-i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~ 354 (517)
..++.+.+.+ .......+.+..... .... ..++.+....+....++. ++..+.... ... ...+
T Consensus 144 t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~--i~~i~~~~~--~~i--~~~~ 217 (410)
T PF04841_consen 144 TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET--IYIIDENSF--KQI--DSDG 217 (410)
T ss_pred CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE--EEEEEcccc--ccc--cCCC
Confidence 3344444332 221111111110000 0000 223334444444444444 332332211 001 1224
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCC
Q 042434 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDC 405 (517)
Q Consensus 355 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~ 405 (517)
++..+++||+|++++.-..+|.+.+.+..-.+ ............+.|.-+.
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 79999999999999999999999888764433 2222223455666666543
No 367
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.00054 Score=66.71 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=101.6
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEE-eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe
Q 042434 266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT-FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE 344 (517)
Q Consensus 266 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~ 344 (517)
|...|.--+++..+++++.|+.-|.+.+|+-..+..... ..+....+..+..+++..++|+|+..|.|.++..+.....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 445566666777899999999999999999766654432 2234555666788888889999999998666665554322
Q ss_pred e----EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce------EEeeccCCCeeEEEEcCCCCEEEEEeCC
Q 042434 345 I----KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA------ERVISEEHPITSLSVSVDCKNFIVNLNS 414 (517)
Q Consensus 345 ~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~d 414 (517)
. ......|...|++++|++++..+++|...|+|..-.+.+.. .........|..+... ..++++++..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~ 189 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLT 189 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhh
Confidence 1 11222235689999999999999999999999998887721 3344455566555544 2345544443
Q ss_pred C
Q 042434 415 Q 415 (517)
Q Consensus 415 ~ 415 (517)
.
T Consensus 190 r 190 (726)
T KOG3621|consen 190 R 190 (726)
T ss_pred h
Confidence 3
No 368
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.83 E-value=0.031 Score=56.49 Aligned_cols=233 Identities=13% Similarity=0.060 Sum_probs=121.4
Q ss_pred CCCCCEEEEeeCCC------cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC-C-----eEEEEECCC
Q 042434 231 SNNGEYLASSSSDC------SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-E-----VLKLWDVET 298 (517)
Q Consensus 231 s~~~~~l~t~~~dg------~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g-----~i~iwd~~~ 298 (517)
+..+..++.|+.++ .+..+|..++ .+.....+. +...-.+++.. ++...++||.| | ++..||..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~-~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTN-EWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcC-cEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC
Confidence 34456677777663 5777777644 222222222 22223344443 45778888888 3 677888887
Q ss_pred CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCcee---EEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC
Q 042434 299 GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKG---IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK 375 (517)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~---i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 375 (517)
++-...-.-.......-.-.-+|...++|+.||... +-.||..+..-..........-..-...-+|...++|+.++
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred CceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence 764432111111111111122688899999987532 55667665443333322221222223334677777887554
Q ss_pred ------cEEEEECCCceEEeec---cCCCeeEEEEcCCCCEEEEEeCCC-----eEEEEEcCCC-CccceEEeCcccCce
Q 042434 376 ------DIRILNLGTYAERVIS---EEHPITSLSVSVDCKNFIVNLNSQ-----EIHMWDVAGK-WEKPFKYTGHSQNKY 440 (517)
Q Consensus 376 ------~i~i~d~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~-~~~~~~~~~~~~~~~ 440 (517)
++..||..+..-.... ....-.. ...-++..+++|+.++ ++..||..+. |..+.........
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~-- 515 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA-- 515 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc--
Confidence 5788998887622211 1111111 2223567777777766 3677887653 2222212111111
Q ss_pred EEEeecCCCCCcEEEEecCCC-----cEEEEecCCCc
Q 042434 441 VIRSCFGGLDGTFIASGSENS-----QIYIWNRRNSK 472 (517)
Q Consensus 441 ~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 472 (517)
...+ .-++...++|+.|| +|..||..+.+
T Consensus 516 -~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 516 -VGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred -ccEE--EECCEEEEEecccCccccceeEEcCCCCCc
Confidence 1111 23677888888776 46667665544
No 369
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.82 E-value=0.007 Score=57.76 Aligned_cols=227 Identities=12% Similarity=0.128 Sum_probs=127.5
Q ss_pred CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE-------------------------------------------EEe
Q 042434 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK-------------------------------------------HTF 305 (517)
Q Consensus 269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------------------------~~~ 305 (517)
.|+.+.|+++..-|++|...|.|.||.....+.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5788999999889999999999988865321110 112
Q ss_pred CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC--------cCCCceEEEEEcc-----CC---CEEE
Q 042434 306 GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG--------TRIPKVLDLAVTP-----DG---ENLI 369 (517)
Q Consensus 306 ~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~-----~~---~~l~ 369 (517)
....++|++++.+ |=.+++.|..+|. +.+.|.++..+..... .....++++.|+- |+ -.++
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~--l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGS--LVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSE--EEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCc--EEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 2346789999987 5569999999998 8899999876643311 1233577777762 33 3788
Q ss_pred EEeCCCcEEEEECC--Cce-------EEeeccCCCeeEEE-EcCC-C-------------------CEEEEEeCCCeEEE
Q 042434 370 SVLSDKDIRILNLG--TYA-------ERVISEEHPITSLS-VSVD-C-------------------KNFIVNLNSQEIHM 419 (517)
Q Consensus 370 ~~~~dg~i~i~d~~--~~~-------~~~~~~~~~i~~~~-~s~~-~-------------------~~l~~~~~d~~i~~ 419 (517)
+|+..|.+.+|.+. ... .....+..++..+. ++.+ | ..+++...+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 99999999999874 111 11113344544444 3222 1 23566666888999
Q ss_pred EEcCCCCccceEEeCcccCceEEEeecC----CCCCcEEEEecCCCcEEEEecCCCceeEEecCCC----CCeeEEEecC
Q 042434 420 WDVAGKWEKPFKYTGHSQNKYVIRSCFG----GLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS----MTVNCVSWNP 491 (517)
Q Consensus 420 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~----s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~v~~~~ 491 (517)
+...+.....+.+ .. ....-.+++. ...+..|++-..+|.|++|.+-.-+.+..+.-+. ..+....+++
T Consensus 240 ~~~~~~k~~~K~~-~~--~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 240 FKPPKSKGAHKSF-DD--PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp E-TT---EEEEE--SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred EeCCCCcccceee-cc--ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 9987653333333 11 1111111111 2356788889999999999999988887776532 3455677788
Q ss_pred CCCcEEEEeeC
Q 042434 492 KRPKMLASASD 502 (517)
Q Consensus 492 ~~~~~l~s~~~ 502 (517)
+| .+++-.|.
T Consensus 317 ~G-di~~~~gp 326 (395)
T PF08596_consen 317 NG-DIFYWTGP 326 (395)
T ss_dssp TS--EEEE-SS
T ss_pred CC-CEEEEeCc
Confidence 88 45554443
No 370
>PHA02713 hypothetical protein; Provisional
Probab=97.82 E-value=0.0032 Score=63.59 Aligned_cols=199 Identities=13% Similarity=-0.020 Sum_probs=105.5
Q ss_pred CCCeEEEEeCC------CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCCCeeEee
Q 042434 278 DDTKLLTCGNA------EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDGNEIKAW 348 (517)
Q Consensus 278 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~~~~~~~ 348 (517)
++...+.||.+ ..+..||..+......-.-....-......-+|+..+.||.++. -.+..||+..+.-...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 56677777754 24778888776543211111111111122236778888887653 2377788776543332
Q ss_pred eCcCCCceEEEEEccCCCEEEEEeCCC-----------------------cEEEEECCCceEEeec-c-CCCeeEEEEcC
Q 042434 349 RGTRIPKVLDLAVTPDGENLISVLSDK-----------------------DIRILNLGTYAERVIS-E-EHPITSLSVSV 403 (517)
Q Consensus 349 ~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~-~-~~~i~~~~~s~ 403 (517)
..............-+|...+.|+.++ .+..||..+.+-.... . ..........-
T Consensus 383 ~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~ 462 (557)
T PHA02713 383 PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH 462 (557)
T ss_pred CCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEE
Confidence 221111111112223677777776542 4778888876621111 1 11111122233
Q ss_pred CCCEEEEEeCC------CeEEEEEcCC--CCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC--cEEEEecCCCce
Q 042434 404 DCKNFIVNLNS------QEIHMWDVAG--KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS--QIYIWNRRNSKP 473 (517)
Q Consensus 404 ~~~~l~~~~~d------~~i~~~d~~~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~ 473 (517)
+++..++|+.+ ..+..||..+ .|.....+...... ...+ .-+|+..++|+.+| .+..||..+.+-
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~---~~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA---LHTI--LHDNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc---ceeE--EECCEEEEEeeecceeehhhcCcccccc
Confidence 56666777653 2467899875 45554444332222 1111 23788899999888 788888887765
Q ss_pred eEEecCCC
Q 042434 474 IEILSGHS 481 (517)
Q Consensus 474 ~~~~~~h~ 481 (517)
...-+.|.
T Consensus 538 ~~~~~~~~ 545 (557)
T PHA02713 538 NHICHQHS 545 (557)
T ss_pred cchhhhcC
Confidence 55444454
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.017 Score=52.98 Aligned_cols=219 Identities=15% Similarity=0.101 Sum_probs=127.5
Q ss_pred EECCCCCEE-EEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCC
Q 042434 229 QFSNNGEYL-ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGD 307 (517)
Q Consensus 229 ~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 307 (517)
.|.++...| .+--..+.|.-|+..++.. ..+. +.+.+.++..-..+..|+++.. -+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~----~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK----RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce----EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 466766644 4444567788888764432 2222 3444455555445555665433 356677666655333221
Q ss_pred -----CCCceEEEEEeCCCCeEEEeeC---------CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC
Q 042434 308 -----HGFIVSSCAWFPDSKRLVCGSS---------DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS 373 (517)
Q Consensus 308 -----~~~~v~~i~~~~~~~~l~~~~~---------d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 373 (517)
.......+...|+|.+.++... ...-.+|.++..+...+....+- ..-+.++||||++.++.+..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~-~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL-TIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE-EecCceEECCCCCEEEEEeC
Confidence 1345567788888887766544 11224888887665555554422 35678999999988877766
Q ss_pred C-CcEEEEECCC--ce-------EEeeccCCCeeEEEEcCCCCEEEEEeCCC-eEEEEEcCCCCccceEEeCcccCceEE
Q 042434 374 D-KDIRILNLGT--YA-------ERVISEEHPITSLSVSVDCKNFIVNLNSQ-EIHMWDVAGKWEKPFKYTGHSQNKYVI 442 (517)
Q Consensus 374 d-g~i~i~d~~~--~~-------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~i 442 (517)
. +.|+.|++.. .. .......+..-.++...+|.+.+++..+| .|..|+... .....+.-... ..-
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG--~l~~~i~lP~~--~~t 258 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDG--KLLGEIKLPVK--RPT 258 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCC--cEEEEEECCCC--CCc
Confidence 4 7888888762 11 11112345566788888888876555554 899999873 34444433321 223
Q ss_pred EeecCCCCCcEEEEecC
Q 042434 443 RSCFGGLDGTFIASGSE 459 (517)
Q Consensus 443 ~~~~~s~~~~~l~~~~~ 459 (517)
.+++..++.+.|++.+.
T Consensus 259 ~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 259 NPAFGGPDLNTLYITSA 275 (307)
T ss_pred cceEeCCCcCEEEEEec
Confidence 34555666665555443
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.81 E-value=0.004 Score=62.73 Aligned_cols=183 Identities=12% Similarity=0.103 Sum_probs=103.4
Q ss_pred cCcEEEEEECCCCCEEEEee------CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC-------
Q 042434 222 KNEVWFVQFSNNGEYLASSS------SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA------- 288 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d------- 288 (517)
...+...++||+|+.+|... .|+.-.||-...+...... ..+ ...+.-.|+|||..|++.+..
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEG--HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence 34678899999999887765 2444455544333322222 222 237889999998888776532
Q ss_pred -----CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE---EeCCCCeeEe-----eeCcCCCc
Q 042434 289 -----EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM---CDCDGNEIKA-----WRGTRIPK 355 (517)
Q Consensus 289 -----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~---~~~~~~~~~~-----~~~~~~~~ 355 (517)
+.+.+.++..+.... .....|..+.|+|||..++... ++. +++ ....+..... ........
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~--v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGK--VYLAVVEQTEDGQYALTNPREVGPGLGDT 498 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCE--EEEEEEEeCCCCceeecccEEeecccCCc
Confidence 233333444333322 2356799999999999988876 455 554 3333333221 12222223
Q ss_pred eEEEEEccCCCEEEEEeCCCc--EEEEECCCceEEeecc---CCCeeEEEEcCCCCEEEEEeCCCeE
Q 042434 356 VLDLAVTPDGENLISVLSDKD--IRILNLGTYAERVISE---EHPITSLSVSVDCKNFIVNLNSQEI 417 (517)
Q Consensus 356 i~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~d~~i 417 (517)
+.++.|..++..+ ++..++. +...++.......... ..++..++-+++ .+++...++.+
T Consensus 499 ~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 499 AVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 6789999999855 5444443 4444444433222122 345666666652 45555555533
No 373
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.81 E-value=0.0035 Score=64.14 Aligned_cols=194 Identities=18% Similarity=0.186 Sum_probs=116.1
Q ss_pred ccCcEEEEEECC--CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC--------CCCeEEEE-eCCC
Q 042434 221 HKNEVWFVQFSN--NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP--------DDTKLLTC-GNAE 289 (517)
Q Consensus 221 h~~~v~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~--------~~~~l~s~-~~dg 289 (517)
+.+...+++... |..+++=|+ .|-|+.......+.....+..-.. ...-.|.| +.+.|+.. ....
T Consensus 429 ~~~~n~~Lavg~k~DrSfVvRg~---~igVFk~~~~~~l~f~t~i~~i~~-~~g~~~~P~k~mL~~~d~~mil~~~~~~~ 504 (794)
T PF08553_consen 429 DGEKNSSLAVGYKNDRSFVVRGS---KIGVFKNTDDDGLEFSTAISNIST-PKGKNFTPKKAMLHDQDRNMILLDPNNPN 504 (794)
T ss_pred CCCccceeEeeeccCceEEECCC---cEeEEECCCCCceeeeEEeccccc-CCCcccCcchhhhhccccceEeecCCCCC
Confidence 345555666653 444444332 477887653333333322211100 00112333 33444443 3456
Q ss_pred eEEEEECCCCcEEEEeCCCCCc-eEEEEEeC-----CCCeEEEeeCCCceeEEEEeCCC--CeeEeeeC---cCCCceEE
Q 042434 290 VLKLWDVETGICKHTFGDHGFI-VSSCAWFP-----DSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRG---TRIPKVLD 358 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~-----~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~---~~~~~i~~ 358 (517)
.|.-.|++.|+.+..+..+... |..++-.. +....+.|-.+.. ++.||++- ..+..... .......|
T Consensus 505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~--lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 505 KLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNS--LFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred ceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCc--eEEeccCCCCCceeeccccccccCCCceE
Confidence 8999999999999999877543 55544321 1234455656666 99999873 22221111 12235777
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434 359 LAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV 422 (517)
Q Consensus 359 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~ 422 (517)
++-+.+| +||+|+.+|.||+||--... ....+.+.+|..+..+.||+++++.+. ..+.+++.
T Consensus 583 ~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 583 FATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred EEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 7777766 78999999999999954333 334456889999999999999887664 45666664
No 374
>PHA02713 hypothetical protein; Provisional
Probab=97.81 E-value=0.0039 Score=62.99 Aligned_cols=217 Identities=7% Similarity=0.056 Sum_probs=111.3
Q ss_pred eEEEEECCCCcEEEEeCCCCCce-EEEEEeCCCCeEEEeeCC-C---ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccC
Q 042434 290 VLKLWDVETGICKHTFGDHGFIV-SSCAWFPDSKRLVCGSSD-T---EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD 364 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v-~~i~~~~~~~~l~~~~~d-~---~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 364 (517)
.+..||..+++....-.-..... .+++. -++..++.|+.+ + .-.++.+|+..+.-.................-+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 46677777665332111111111 12222 366777777754 1 123788888766443332222112122223346
Q ss_pred CCEEEEEeCCC-----cEEEEECCCce-EEeeccCCCee-EEEEcCCCCEEEEEeCC-----------------------
Q 042434 365 GENLISVLSDK-----DIRILNLGTYA-ERVISEEHPIT-SLSVSVDCKNFIVNLNS----------------------- 414 (517)
Q Consensus 365 ~~~l~~~~~dg-----~i~i~d~~~~~-~~~~~~~~~i~-~~~~s~~~~~l~~~~~d----------------------- 414 (517)
|+..+.|+.++ .+..||..+.. ........+.. .....-+++..++|+.+
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSS 431 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccccccc
Confidence 77777787654 48889988766 22111111111 11122366777777654
Q ss_pred CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCCC------cEEEEecCC-C--ceeEEecCCCCCe
Q 042434 415 QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS------QIYIWNRRN-S--KPIEILSGHSMTV 484 (517)
Q Consensus 415 ~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------~i~iwd~~~-~--~~~~~~~~h~~~v 484 (517)
..+..||..+. |.....+...... ..+ + .-+|+..+.|+.++ .+..||..+ . +.+..++......
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~-~~~--~--~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIR-PGV--V--SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred ceEEEECCCCCeEeecCCCCccccc-CcE--E--EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 24677887543 3322222111111 011 1 23677777777542 467899876 3 4445554433333
Q ss_pred eEEEecCCCCcEEEEeeCCC--cEEEeCCCCCC
Q 042434 485 NCVSWNPKRPKMLASASDDH--TIRIWGPCQSS 515 (517)
Q Consensus 485 ~~v~~~~~~~~~l~s~~~dg--~v~iw~~~~~~ 515 (517)
..++. ++ .+.+.||.|| .+-.||+.+.+
T Consensus 507 ~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 507 HTILH--DN-TIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eeEEE--CC-EEEEEeeecceeehhhcCccccc
Confidence 33333 45 7999999998 77788887653
No 375
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.79 E-value=0.0074 Score=56.67 Aligned_cols=213 Identities=16% Similarity=0.179 Sum_probs=115.5
Q ss_pred CeEEEEECCCCcEEEEeC-CCCCceEEEEE---eCC----CCeEEEeeC----------CCceeEEEEeCCCC-----ee
Q 042434 289 EVLKLWDVETGICKHTFG-DHGFIVSSCAW---FPD----SKRLVCGSS----------DTEKGIFMCDCDGN-----EI 345 (517)
Q Consensus 289 g~i~iwd~~~~~~~~~~~-~~~~~v~~i~~---~~~----~~~l~~~~~----------d~~v~i~~~~~~~~-----~~ 345 (517)
+.|++.|..+.+.+..+. .....+.+++. ..+ ..+|++|+. .|. +++++.... .+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr--i~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR--ILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE--EEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE--EEEEEEEcccccceEE
Confidence 367888888887776554 22344554433 322 457777653 144 666666552 33
Q ss_pred Eee-eCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434 346 KAW-RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV 422 (517)
Q Consensus 346 ~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~ 422 (517)
... .....++|.+++-- ++ .++++ .++.|.+|++.... ........++...+....++++++|.....+.++..
T Consensus 80 ~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred EEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEE
Confidence 322 22234578888766 33 44443 45889999987765 222222233344444444669999998888888866
Q ss_pred CCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC-------Cc--e--eEEecCCCCCeeEE---E
Q 042434 423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN-------SK--P--IEILSGHSMTVNCV---S 488 (517)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~~--~--~~~~~~h~~~v~~v---~ 488 (517)
+........+.......+...+.+. ++++.++++..+|.+.++.... +. + ...+. ....|+++ .
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l-~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~ 234 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFL-VDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGS 234 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--
T ss_pred EccCCEEEEEEecCCCccEEEEEEe-cCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEE
Confidence 5432333333333333444444443 3446899999999999997652 22 2 22222 24567777 5
Q ss_pred ecC--CCCc-----EEEEeeCCCcEEE
Q 042434 489 WNP--KRPK-----MLASASDDHTIRI 508 (517)
Q Consensus 489 ~~~--~~~~-----~l~s~~~dg~v~i 508 (517)
+.| .+.. .++-++.+|.|.+
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEE
Confidence 555 2222 4778888998874
No 376
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.78 E-value=6.3e-05 Score=44.75 Aligned_cols=38 Identities=39% Similarity=0.631 Sum_probs=34.4
Q ss_pred ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEE
Q 042434 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWK 250 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~ 250 (517)
++...+..|...|+++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45677788999999999999999999999999999995
No 377
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.71 E-value=0.018 Score=48.77 Aligned_cols=219 Identities=12% Similarity=0.083 Sum_probs=116.6
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEE-EeCCCCCceEEEEEeC-CCC-eEEEeeCCCceeEEEEeCCCCeeEeeeC------
Q 042434 280 TKLLTCGNAEVLKLWDVETGICKH-TFGDHGFIVSSCAWFP-DSK-RLVCGSSDTEKGIFMCDCDGNEIKAWRG------ 350 (517)
Q Consensus 280 ~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~-~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~------ 350 (517)
.++.+--..|.|.-||+.+.+..+ ++.+. ++.++.+-- ++. .++++.. ....+..||-..........
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G-~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCG-SKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeec-ceEEEEEcccccceeeeeeeccccCc
Confidence 344444445667778887755433 22222 123333322 222 2222222 22236667643322221111
Q ss_pred -cCCCceEEEEEccCCCEEEEEeC---------CCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEE-eCCCeEEE
Q 042434 351 -TRIPKVLDLAVTPDGENLISVLS---------DKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVN-LNSQEIHM 419 (517)
Q Consensus 351 -~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~ 419 (517)
....+.++-..+|+|++++-.-. .|.++.|-...........-.-.+.++|+.+.+.+... +.+-.|.-
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 11235666778999998442222 24566665544334444444445678898887766554 55667877
Q ss_pred EE--cCCCC----ccceEEeCccc-CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCC
Q 042434 420 WD--VAGKW----EKPFKYTGHSQ-NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK 492 (517)
Q Consensus 420 ~d--~~~~~----~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~ 492 (517)
|| ..++. ..+..+..... ......-++...+|++.++.-..|+|...|..+|+.+.++.-....|++++|--.
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 87 33331 12222221100 0000001111447788888888899999999999999999988999999999643
Q ss_pred -CCcEEEEee
Q 042434 493 -RPKMLASAS 501 (517)
Q Consensus 493 -~~~~l~s~~ 501 (517)
-.-+.+|+.
T Consensus 265 n~d~~yvT~a 274 (310)
T KOG4499|consen 265 NLDILYVTTA 274 (310)
T ss_pred CccEEEEEeh
Confidence 212444444
No 378
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.71 E-value=0.00012 Score=43.51 Aligned_cols=39 Identities=44% Similarity=0.753 Sum_probs=34.4
Q ss_pred CceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 471 SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 471 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
++++..+..|...|.++.|++.+ .++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 45667777899999999999988 7999999999999996
No 379
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0013 Score=67.35 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=77.8
Q ss_pred CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCce
Q 042434 233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIV 312 (517)
Q Consensus 233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 312 (517)
.+..++.|+..|.+-..|+... +.+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 4557888999999988887532 22222223346899999999999999999999999999999999998887776655
Q ss_pred EEE---EEeCCCCeEEEeeCCCceeEEEEe
Q 042434 313 SSC---AWFPDSKRLVCGSSDTEKGIFMCD 339 (517)
Q Consensus 313 ~~i---~~~~~~~~l~~~~~d~~v~i~~~~ 339 (517)
+++ .+..++..++++...|. +|...
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 554 44556667888888887 66443
No 380
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.67 E-value=0.0052 Score=45.85 Aligned_cols=100 Identities=18% Similarity=0.241 Sum_probs=66.4
Q ss_pred EEEEEECC---CC-CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee
Q 042434 270 VSFVAWSP---DD-TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI 345 (517)
Q Consensus 270 v~~l~~s~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~ 345 (517)
|+++++.. || +.|++|+.|..|++|+ ..+.+..+ .....|+++.-... ..|+.+..+|+|.+| +. ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei-~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY--~~---~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEI-TETDKVTSLCSLGG-GRFAYALANGTVGVY--DR---SQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEE-ecccceEEEEEcCC-CEEEEEecCCEEEEE--eC---cc
Confidence 56666544 33 6899999999999998 44666666 34556777776655 679999999995555 32 33
Q ss_pred EeeeCcCCCceEEEEEcc---CC-CEEEEEeCCCcEE
Q 042434 346 KAWRGTRIPKVLDLAVTP---DG-ENLISVLSDKDIR 378 (517)
Q Consensus 346 ~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~dg~i~ 378 (517)
+.|+......+.++.+.. || ..|++|-.+|.|-
T Consensus 73 RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 444444444566665543 22 2688888888764
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.65 E-value=0.007 Score=61.02 Aligned_cols=186 Identities=11% Similarity=0.061 Sum_probs=105.2
Q ss_pred CceEEEEEeCCCCeEEEee------CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC---------
Q 042434 310 FIVSSCAWFPDSKRLVCGS------SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD--------- 374 (517)
Q Consensus 310 ~~v~~i~~~~~~~~l~~~~------~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------- 374 (517)
..+.+.+.+|+|+.++... .|..-.+|+.+..+.. ..+.... ....-.|+|+|..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999888766 3445568888875544 3333322 37778999998877766432
Q ss_pred ---CcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEE---EcCCCCccc---eEEeCcccCceEEEee
Q 042434 375 ---KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMW---DVAGKWEKP---FKYTGHSQNKYVIRSC 445 (517)
Q Consensus 375 ---g~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~---d~~~~~~~~---~~~~~~~~~~~~i~~~ 445 (517)
+.+.+.++..+.... .....|..+.|||||..++... ++.|++- ....+...+ ..+..... .....+
T Consensus 427 ~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~--~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG--DTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC--Cccccc
Confidence 234334444433221 3356799999999999988876 4677763 322331111 01111111 112334
Q ss_pred cCCCCCcEEEEecCCCcEEEEecCC-CceeEEecC--CCCCeeEEEecCCCCcEEEEeeCCCcE
Q 042434 446 FGGLDGTFIASGSENSQIYIWNRRN-SKPIEILSG--HSMTVNCVSWNPKRPKMLASASDDHTI 506 (517)
Q Consensus 446 ~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~v 506 (517)
.|..++.++ ++..++.-.+|.+.- |.....+.+ ....+.+|+=+++ . ++....+|.+
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~-iyv~~~~g~~ 562 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--T-VYVTDARAVL 562 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--e-EEEEcCCceE
Confidence 457777754 555555444554332 222222233 2567778887763 2 4444556643
No 382
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.63 E-value=0.049 Score=49.71 Aligned_cols=275 Identities=11% Similarity=0.046 Sum_probs=131.5
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC-CCeeeEEEEeccC--CCCEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE-DSKLTLKHTLRSH--QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE 297 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~h--~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 297 (517)
-...+.+|.|..+..-.++|. .+. |+...+ +........-... .-...++.|..+ ..+++ +..|. .+...+
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~-ll~T~D 88 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGL-LLHTTD 88 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTE-EEEESS
T ss_pred CCCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCce-EEEecC
Confidence 355888999986566666654 454 344433 3444433211111 123667777543 33444 44553 333344
Q ss_pred CCcEEEEeC---CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC
Q 042434 298 TGICKHTFG---DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374 (517)
Q Consensus 298 ~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 374 (517)
.|+.-..+. .-......+....++ ....++..|. |+.-.-.+..-........+.+..+.-+++|++++++...
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 454333321 122333444444444 3343455566 7766666655555555555678899999999998888777
Q ss_pred CcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc-ceEEeCcccCceEEEeecCCCCC
Q 042434 375 KDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK-PFKYTGHSQNKYVIRSCFGGLDG 451 (517)
Q Consensus 375 g~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~ 451 (517)
....-||..... .........+..+.|.|++...+++ ..|.|++=+....... ...........+.+-.+.+.+++
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence 777788876433 5555567889999999997766644 8888888773221011 11111111223334444556777
Q ss_pred cEEEEecCCCcEEEEecCCCceeEEec---CCCCCeeEEEecCCCCcEEEEeeCCCcEEEe
Q 042434 452 TFIASGSENSQIYIWNRRNSKPIEILS---GHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509 (517)
Q Consensus 452 ~~l~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw 509 (517)
...++|+ .|.+ +.....|+.=..-+ .-.+..+.|.|.+.. .-...+.+|.|.-|
T Consensus 245 ~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~--~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 245 EIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD--KGFVLGQDGVLLRY 301 (302)
T ss_dssp -EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT--EEEEE-STTEEEEE
T ss_pred CEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCC--ceEEECCCcEEEEe
Confidence 6666665 4444 33445555433332 234568888887654 34556788877655
No 383
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.04 Score=48.69 Aligned_cols=163 Identities=15% Similarity=0.136 Sum_probs=107.4
Q ss_pred eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCC-CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC
Q 042434 263 LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH-GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341 (517)
Q Consensus 263 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~ 341 (517)
+.+-...|.++.|+|+.+.|++......-.||=-.+|+.++++.-. -.....+.+..++.+.++--.++.+.++..+.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3445566999999999999999888888888877789999887522 233456888888888888888888555556655
Q ss_pred CCeeEe----ee----CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEee-----c-------cCCCeeEEEE
Q 042434 342 GNEIKA----WR----GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI-----S-------EEHPITSLSV 401 (517)
Q Consensus 342 ~~~~~~----~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~-------~~~~i~~~~~ 401 (517)
+..+.. +. .+.......++|.|....++.+-.-.-+.||.......... . .-..+.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 433211 11 11133577899999999888888877777776653321111 0 1124667777
Q ss_pred cCCC-CEEEEEeCCCeEEEEEcCCC
Q 042434 402 SVDC-KNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 402 s~~~-~~l~~~~~d~~i~~~d~~~~ 425 (517)
++.. ..++.+..++.+.-.|..+.
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 7644 44445555666666666554
No 384
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.58 E-value=0.00016 Score=60.62 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=88.5
Q ss_pred EEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe-CcccCceEEEeec
Q 042434 368 LISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT-GHSQNKYVIRSCF 446 (517)
Q Consensus 368 l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~i~~~~ 446 (517)
+...+.+|.|+-++++..+.........-.....-.-+..+++|+.+|.|++|...........+. +.... ...+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i---~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESI---DLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccc---eeccc
Confidence 444566777777777654411111110000022223456799999999999998753211111111 11111 11122
Q ss_pred CCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC-CCeeEEEecCCCCcEEEEe--eCCCcEEEeCCCCC
Q 042434 447 GGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS-MTVNCVSWNPKRPKMLASA--SDDHTIRIWGPCQS 514 (517)
Q Consensus 447 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~l~s~--~~dg~v~iw~~~~~ 514 (517)
...++.+..+++.||.|+.|++.-++.+.....|. .++.....+..+ .+++.+ |.|..++.|++..-
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhhh
Confidence 23456789999999999999999999888888887 666666666666 577777 88888888988653
No 385
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.015 Score=50.89 Aligned_cols=199 Identities=12% Similarity=0.027 Sum_probs=121.3
Q ss_pred cEEEeccccCcEEEEEECCCCCEEEEeeC-----CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-
Q 042434 214 TVQILTEHKNEVWFVQFSNNGEYLASSSS-----DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN- 287 (517)
Q Consensus 214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~- 287 (517)
.-+.+-||. .|||||.+|...-. -|.|-|||.. ..+..+..+..|.-.-..+.|.+||+.++.+..
T Consensus 111 ~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGG 182 (366)
T COG3490 111 EGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGG 182 (366)
T ss_pred cCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCcCcceeEEecCCcEEEEeCCc
Confidence 334455554 59999999987643 3779999996 556777788888888899999999999987643
Q ss_pred -----C------------CeEEEEECCCCcEEEEe--C--CCCCceEEEEEeCCCCeEEEeeCCCce----eEEEEeCCC
Q 042434 288 -----A------------EVLKLWDVETGICKHTF--G--DHGFIVSSCAWFPDSKRLVCGSSDTEK----GIFMCDCDG 342 (517)
Q Consensus 288 -----d------------g~i~iwd~~~~~~~~~~--~--~~~~~v~~i~~~~~~~~l~~~~~d~~v----~i~~~~~~~ 342 (517)
| -++.+.|..+|+.+.+. . .+...|..++..+||...+.+-..|.- -+.-.-..+
T Consensus 183 IethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g 262 (366)
T COG3490 183 IETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKG 262 (366)
T ss_pred eecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCC
Confidence 1 13445555566554332 2 345568888888888766655443320 011111122
Q ss_pred CeeEeeeCcC------CCceEEEEEccCCCEEEEEeCCC-cEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCC
Q 042434 343 NEIKAWRGTR------IPKVLDLAVTPDGENLISVLSDK-DIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQ 415 (517)
Q Consensus 343 ~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 415 (517)
+.+..+.... ...|-+++.+.+..+++..+-.| ...+||..++.......-.....+ .+...-+++.+.+|
T Consensus 263 ~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGv--a~~~~gf~vssg~G 340 (366)
T COG3490 263 EPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGV--AAAKGGFAVSSGQG 340 (366)
T ss_pred CcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccccccc--eeccCceEEecCCc
Confidence 3332222111 12466778877666666555544 577899998874443332222223 33445577788888
Q ss_pred eEEEEEc
Q 042434 416 EIHMWDV 422 (517)
Q Consensus 416 ~i~~~d~ 422 (517)
.+.++.-
T Consensus 341 ~~~~~s~ 347 (366)
T COG3490 341 RIIFYSR 347 (366)
T ss_pred eEEeccc
Confidence 8887753
No 386
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.50 E-value=0.046 Score=50.06 Aligned_cols=222 Identities=16% Similarity=0.127 Sum_probs=120.8
Q ss_pred CCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe---------
Q 042434 277 PDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA--------- 347 (517)
Q Consensus 277 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~--------- 347 (517)
..++.|+.|+.+| +.+++.......... .+...|..+...|+-+.+++-+. +. ++.+++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i-~~~~~I~ql~vl~~~~~llvLsd-~~--l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI-LKLSSITQLSVLPELNLLLVLSD-GQ--LYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE-eecceEEEEEEecccCEEEEEcC-Cc--cEEEEchhhccccccccccccc
Confidence 3578899998888 899998333222222 22333999999998777776654 77 6666654211111
Q ss_pred -----eeCcCCCceEEEE--EccCCCEEEEEeCCCcEEEEECCCc------eEEeeccCCCeeEEEEcCCCCEEEEEeCC
Q 042434 348 -----WRGTRIPKVLDLA--VTPDGENLISVLSDKDIRILNLGTY------AERVISEEHPITSLSVSVDCKNFIVNLNS 414 (517)
Q Consensus 348 -----~~~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 414 (517)
........+..++ -...+...++......|.+|..... ..........+..++|. ++.++++..+
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC
Confidence 0111112344444 2233444444555568888877552 23445566788899998 5677777644
Q ss_pred CeEEEEEcCCCCccceEEe--Ccc-------cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE--EecCCCCC
Q 042434 415 QEIHMWDVAGKWEKPFKYT--GHS-------QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE--ILSGHSMT 483 (517)
Q Consensus 415 ~~i~~~d~~~~~~~~~~~~--~~~-------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~h~~~ 483 (517)
...+.|+.++ .....+. ... .....+.... -+++.+|++. |..-.+.|. .|++.. .+. -...
T Consensus 158 -~f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~-W~~~ 230 (275)
T PF00780_consen 158 -GFYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ-WSSA 230 (275)
T ss_pred -ceEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--cceEEEEcC-CCCcCcccEEE-cCCc
Confidence 4788888754 2211111 100 0111122222 2345666654 222333343 454443 222 2345
Q ss_pred eeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 484 VNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 484 v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
+.++++. .+ +++..+. +.|-||++.+++.
T Consensus 231 p~~~~~~--~p-yli~~~~-~~iEV~~~~~~~l 259 (275)
T PF00780_consen 231 PQSVAYS--SP-YLIAFSS-NSIEVRSLETGEL 259 (275)
T ss_pred hhEEEEE--CC-EEEEECC-CEEEEEECcCCcE
Confidence 6677774 33 4544444 4599999998864
No 387
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.47 E-value=0.15 Score=51.22 Aligned_cols=55 Identities=7% Similarity=0.032 Sum_probs=36.8
Q ss_pred CcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434 461 SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV 517 (517)
Q Consensus 461 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v 517 (517)
|.|.-+|+.+|+.+-..+.......+.... .+ .+++.++.||.++.+|.++|+++
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t-~g-~lvf~g~~~G~l~a~D~~TGe~l 495 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT-AG-DLVFYGTLEGYFKAFDAKTGEEL 495 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE-CC-cEEEEECCCCeEEEEECCCCCEe
Confidence 467788888888777665322212222122 33 46777888999999999999864
No 388
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.46 E-value=0.11 Score=49.60 Aligned_cols=84 Identities=12% Similarity=0.071 Sum_probs=56.2
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCC---------------Cc-EEEEec
Q 042434 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLD---------------GT-FIASGS 458 (517)
Q Consensus 395 ~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---------------~~-~l~~~~ 458 (517)
.+.+++.+|++++.++...-|.|.++|+... ..++.++|........-.+.-..+ .. +++-+-
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 4778999999999888888899999999876 566666665543222111110000 11 234456
Q ss_pred CCCcEEEEecCCCceeEEecC
Q 042434 459 ENSQIYIWNRRNSKPIEILSG 479 (517)
Q Consensus 459 ~dg~i~iwd~~~~~~~~~~~~ 479 (517)
.-|.|.||.+++|..+..+..
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cCCeEEEEecCCCCEEEEEEe
Confidence 688999999998887776653
No 389
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.45 E-value=0.0017 Score=66.44 Aligned_cols=136 Identities=13% Similarity=0.135 Sum_probs=84.6
Q ss_pred CCCcEEEEECCCce-EEeeccCCCeeEEEEcCC-------CCEEEEEeCCCeEEEEEcCCCCccceEEeCcc-cCceEEE
Q 042434 373 SDKDIRILNLGTYA-ERVISEEHPITSLSVSVD-------CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS-QNKYVIR 443 (517)
Q Consensus 373 ~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~-------~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~i~ 443 (517)
....|+-.|+..++ .........+.-..+.|+ ....++|-.++.+..||.+-....+..-..+. .......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 45789999999888 222222223334455553 33467888899999999986432222111111 1122244
Q ss_pred eecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 444 SCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 444 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
|++-+. ..+||+|+.+|.||+||.-..+....+++-..+|.+|..+.||..+|+|| +..+.+++.
T Consensus 582 ~~aTt~-~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 582 CFATTE-DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred EEEecC-CceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 444344 45899999999999999543333444567789999999999996555555 345555554
No 390
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.004 Score=58.92 Aligned_cols=140 Identities=19% Similarity=0.228 Sum_probs=94.8
Q ss_pred CCCeEE-EEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC-------eEEEeeCCCceeEEEEeCC--CC-eeE
Q 042434 278 DDTKLL-TCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK-------RLVCGSSDTEKGIFMCDCD--GN-EIK 346 (517)
Q Consensus 278 ~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-------~l~~~~~d~~v~i~~~~~~--~~-~~~ 346 (517)
+.++|+ ++.....++-.|++.|+.+..+..+.. |.-+.+.|+.+ .-+.|-.+.. |+.||++ +. .+.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~--vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNS--VFRIDPRVQGKNKLA 420 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCc--eEEecccccCcceee
Confidence 444444 455556788889999999999877665 77777887643 2234445555 9999987 33 121
Q ss_pred eeeCcC---CCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 042434 347 AWRGTR---IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWD 421 (517)
Q Consensus 347 ~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d 421 (517)
....+. .....|++-..+| ++++|+.+|.|++||--... ....+.+.+|..+..+.+|+++++.+ +..+.+.+
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred eeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 112211 1245566655555 88999999999999973333 55667788999999999999987665 45566666
Q ss_pred c
Q 042434 422 V 422 (517)
Q Consensus 422 ~ 422 (517)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 5
No 391
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.38 E-value=0.026 Score=42.19 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=65.4
Q ss_pred EEEEEECC---CC-CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434 225 VWFVQFSN---NG-EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300 (517)
Q Consensus 225 v~~~~~s~---~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 300 (517)
|+++++.. +| +.|++||.|..|++|+-. ..+..+. -.+.|+++.-... ..++.+-.+|+|-+|+- ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-----e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-----EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-----cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cc
Confidence 56666654 33 589999999999999853 2334443 3567888877765 57888899999999985 33
Q ss_pred EEEEeCCCCCceEEEEEeC-C--C-CeEEEeeCCCce
Q 042434 301 CKHTFGDHGFIVSSCAWFP-D--S-KRLVCGSSDTEK 333 (517)
Q Consensus 301 ~~~~~~~~~~~v~~i~~~~-~--~-~~l~~~~~d~~v 333 (517)
.+...+.. ..+.++.+.. + | ..|++|-.+|.+
T Consensus 73 RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 73 RLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred eeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 34444333 3366666554 2 2 267888777763
No 392
>PRK10115 protease 2; Provisional
Probab=97.33 E-value=0.27 Score=51.16 Aligned_cols=239 Identities=12% Similarity=0.106 Sum_probs=119.1
Q ss_pred CCEEEEEECCCCCeEEEEeC-CC----eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCC----ceeEEEE
Q 042434 268 NPVSFVAWSPDDTKLLTCGN-AE----VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT----EKGIFMC 338 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~----~v~i~~~ 338 (517)
-.+..+.|+||+++|+.+.. +| .|++-|+.+|..+...-... -..++|.+|++.|+.+..+. .-.+|.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34677889999998886533 23 68899998886432211111 14699999998777765532 1458888
Q ss_pred eCCCC--eeE-eeeCcCCCceEEEEEccCCCEEEEEeC---CCcEEEEECCC--ce-EEeeccC-CCeeEEEEcCCCCEE
Q 042434 339 DCDGN--EIK-AWRGTRIPKVLDLAVTPDGENLISVLS---DKDIRILNLGT--YA-ERVISEE-HPITSLSVSVDCKNF 408 (517)
Q Consensus 339 ~~~~~--~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~--~~-~~~~~~~-~~i~~~~~s~~~~~l 408 (517)
+..+. ... .+.............+.++++++..+. ++.+.+++... .. ....... .....+. +.. ..+
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l 282 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRF 282 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEE
Confidence 88765 222 233222112223444558887665443 34788888532 22 2222222 2222222 222 344
Q ss_pred EEEeCC--C--eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEE--EecCCCceeEEec-CCC
Q 042434 409 IVNLNS--Q--EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYI--WNRRNSKPIEILS-GHS 481 (517)
Q Consensus 409 ~~~~~d--~--~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i--wd~~~~~~~~~~~-~h~ 481 (517)
...+.. . .|...++... ..-..+..+.. ...+..+.+. .+.++++...+|.-++ ++..++ .+..+. ...
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~-~~~~~l~~~~~-~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~ 358 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDE-QQWEELIPPRE-NIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDP 358 (686)
T ss_pred EEEEcCCCCCceEEEecCCCc-ccCeEEECCCC-CCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCC
Confidence 443332 2 3444444321 11223333322 1223333333 3456666666775444 454433 334433 222
Q ss_pred CCeeEEEec--CCCCcEEEEeeC---CCcEEEeCCCCC
Q 042434 482 MTVNCVSWN--PKRPKMLASASD---DHTIRIWGPCQS 514 (517)
Q Consensus 482 ~~v~~v~~~--~~~~~~l~s~~~---dg~v~iw~~~~~ 514 (517)
..+..+.++ +++..++++.+. -+.+..+|+.++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 359 AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 233334444 344345555443 356777777654
No 393
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.32 E-value=0.27 Score=50.81 Aligned_cols=305 Identities=12% Similarity=0.118 Sum_probs=163.8
Q ss_pred cccccCCCcccccCCCcccEEEec---c--ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC-eeeEEEEeccCCCC
Q 042434 196 AISLYEDHCCGRDQIPTETVQILT---E--HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS-KLTLKHTLRSHQNP 269 (517)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~l~---~--h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~h~~~ 269 (517)
+++++++........|.-...... + -...|.-..|-.|..+|.++..||.+.-+.++... .....+...-...+
T Consensus 552 aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P 631 (1096)
T KOG1897|consen 552 AVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQP 631 (1096)
T ss_pred EEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCC
Confidence 556666665555555544333322 1 22345555666678899999999998877664321 11111222223566
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCC-CeeE
Q 042434 270 VSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDG-NEIK 346 (517)
Q Consensus 270 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~-~~~~ 346 (517)
+.--.|+..++.-+.+..|.-..+|.- +++...+--.-+.--..+.|+.+ ...++.+..+. +++...|.-. -.++
T Consensus 632 ~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~-l~i~tid~iqkl~ir 709 (1096)
T KOG1897|consen 632 ISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGA-LTIGTIDEIQKLHIR 709 (1096)
T ss_pred cEEEEEeeCCceEEEEeCCCCEEEEec-CCcEEEeccchHHhhhhcccccccCCceEEEecCCc-eEEEEecchhhccee
Confidence 666677766554444555665556653 34333221111111111222222 23444444443 3333333222 2222
Q ss_pred eeeCcCCCceEEEEEccCCCEEEEEeC-----------C---CcEEEEECCCceEEe---eccC---CCeeEEEEcCC-C
Q 042434 347 AWRGTRIPKVLDLAVTPDGENLISVLS-----------D---KDIRILNLGTYAERV---ISEE---HPITSLSVSVD-C 405 (517)
Q Consensus 347 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------d---g~i~i~d~~~~~~~~---~~~~---~~i~~~~~s~~-~ 405 (517)
....+ .....+++.+....+.+.+. . ..++++|-++.+... .... ..+.+..|..| +
T Consensus 710 tvpl~--~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~ 787 (1096)
T KOG1897|consen 710 TVPLG--ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPN 787 (1096)
T ss_pred eecCC--CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCc
Confidence 22222 24555666664333333322 1 247778877766221 1112 23555568777 6
Q ss_pred CEEEEEeC----------CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE
Q 042434 406 KNFIVNLN----------SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE 475 (517)
Q Consensus 406 ~~l~~~~~----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 475 (517)
.++++|+. .|.|.+|..... ........+.-...+...+. -+|+++|.- +..|++|++.+.+.++
T Consensus 788 t~~vVGT~~v~Pde~ep~~GRIivfe~~e~-~~L~~v~e~~v~Gav~aL~~--fngkllA~I--n~~vrLye~t~~~eLr 862 (1096)
T KOG1897|consen 788 TYYVVGTGLVYPDENEPVNGRIIVFEFEEL-NSLELVAETVVKGAVYALVE--FNGKLLAGI--NQSVRLYEWTTERELR 862 (1096)
T ss_pred eEEEEEEEeeccCCCCcccceEEEEEEecC-Cceeeeeeeeeccceeehhh--hCCeEEEec--CcEEEEEEccccceeh
Confidence 77888753 478888888663 33333333332223333333 378777755 5579999999988887
Q ss_pred EecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 476 ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 476 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
.-..|..++..+...-.| ..++.|..=+.+.+-.
T Consensus 863 ~e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~ 896 (1096)
T KOG1897|consen 863 IECNISNPIIALDLQVKG-DEIAVGDLMRSITLLQ 896 (1096)
T ss_pred hhhcccCCeEEEEEEecC-cEEEEeeccceEEEEE
Confidence 777888899999888888 6788887766665533
No 394
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.0026 Score=60.11 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=84.1
Q ss_pred EEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCE-------EEEEeCCCeEEEEEcCCCCc-cceEEeCccc-C
Q 042434 369 ISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKN-------FIVNLNSQEIHMWDVAGKWE-KPFKYTGHSQ-N 438 (517)
Q Consensus 369 ~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~-------l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~-~ 438 (517)
..+.....++-.|+..++ .........|+-+.+.|+.+. -++|-.++.|.-||.+-... .+....+|.- .
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~ 429 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST 429 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccc
Confidence 344455678888888887 333344444777888886543 45677888999999975433 2222222221 1
Q ss_pred ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEe
Q 042434 439 KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASA 500 (517)
Q Consensus 439 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~ 500 (517)
..-..|.. .....+|++||.+|.|++||.-.-+.-..+++-..+|..|..+.+|..+|+||
T Consensus 430 k~nFsc~a-TT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 430 KNNFSCFA-TTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred ccccceee-ecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 11122322 33455899999999999999733334445678889999999999995555544
No 395
>PHA03098 kelch-like protein; Provisional
Probab=97.27 E-value=0.23 Score=50.52 Aligned_cols=189 Identities=13% Similarity=0.024 Sum_probs=87.9
Q ss_pred CCCCEEEEeeCCC------cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC-----eEEEEECCCCc
Q 042434 232 NNGEYLASSSSDC------SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE-----VLKLWDVETGI 300 (517)
Q Consensus 232 ~~~~~l~t~~~dg------~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~ 300 (517)
.++..++.|+.++ .+..||..+. .+.....+.........+.+ ++...+.||.++ .+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTK-SWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCC-eeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3556667776543 4666776543 22222111111112222222 567777887653 57788887765
Q ss_pred EEEEeCCCCCceEEEEEeCCCCeEEEeeCCC----ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC-
Q 042434 301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT----EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK- 375 (517)
Q Consensus 301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~----~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg- 375 (517)
-...-..........+..-+++.++.|+.+. .-.++.||..+..-..............+...++...+.|+.++
T Consensus 370 W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYI 449 (534)
T ss_pred eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCC
Confidence 4322111111111111223567777777421 12377888776543332221111111122233566666665432
Q ss_pred -------cEEEEECCCceEEeec-c--CCCeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCC
Q 042434 376 -------DIRILNLGTYAERVIS-E--EHPITSLSVSVDCKNFIVNLNS-----QEIHMWDVAG 424 (517)
Q Consensus 376 -------~i~i~d~~~~~~~~~~-~--~~~i~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~ 424 (517)
.+.+||..+.+-.... . .....+++ ..+++.++.|+.+ +.+..||..+
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 3888998876621111 1 11111111 1255666666543 3567777654
No 396
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.15 Score=45.21 Aligned_cols=200 Identities=12% Similarity=0.106 Sum_probs=126.4
Q ss_pred CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce
Q 042434 307 DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA 386 (517)
Q Consensus 307 ~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 386 (517)
+....+.++.|+|+.+.|++......- +...+.+|..+..+..........+.+..+|.++++--.++.+.++.+....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~-iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAA-IVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCce-EEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 445569999999999988887766542 6667888888887766555567788898888888888888888888765442
Q ss_pred --E-----E----eecc-CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccce--EEeCcccC----ceEEEeecCC
Q 042434 387 --E-----R----VISE-EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPF--KYTGHSQN----KYVIRSCFGG 448 (517)
Q Consensus 387 --~-----~----~~~~-~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~~----~~~i~~~~~s 448 (517)
. . ...+ +.....++|+|....+.++-.-+-+.+|.+........ ....+... ...+....+.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 0 0 1111 44678899999999999988887777777653311111 11111111 1112233333
Q ss_pred -CCCcEEEEecCCCcEEEEecCCCceeEEecCCC------C---CeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 449 -LDGTFIASGSENSQIYIWNRRNSKPIEILSGHS------M---TVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 449 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~------~---~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
+.+.+++-+.+++.+.-.|.. |.++..+.-+. . .--.|+..++|. |...|.-+..+.+.
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~--lYIvSEPnlfy~F~ 310 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN--LYIVSEPNLFYRFT 310 (316)
T ss_pred CCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC--EEEEecCCcceecc
Confidence 356777888888888888865 55555443221 1 234677777773 44455555444443
No 397
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0028 Score=61.18 Aligned_cols=93 Identities=18% Similarity=0.179 Sum_probs=70.6
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceE-EEEEeCCCCeEEEeeCCCceeEEEEeCCCC-e
Q 042434 267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVS-SCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-E 344 (517)
Q Consensus 267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~ 344 (517)
...|..+.|+|.-..+|.+..+|.|.+..+. .+.+.++.-++..++ +++|.|||+.+++|-.||+ |.+.|.... .
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~--I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT--IRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe--EEEEEccCCCc
Confidence 4568889999999999999999999999987 777888876777777 9999999999999999999 666666532 2
Q ss_pred eEeeeCcCCCceEEEEEc
Q 042434 345 IKAWRGTRIPKVLDLAVT 362 (517)
Q Consensus 345 ~~~~~~~~~~~i~~~~~~ 362 (517)
+..........|.++-|.
T Consensus 97 l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWD 114 (665)
T ss_pred eeccccccccchheeecc
Confidence 222222222345555554
No 398
>PRK13684 Ycf48-like protein; Provisional
Probab=97.09 E-value=0.27 Score=46.33 Aligned_cols=273 Identities=12% Similarity=0.098 Sum_probs=137.4
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecC-CCeeeEEEE-eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE-DSKLTLKHT-LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET- 298 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~-~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~- 298 (517)
...++++.|..+.+-+|+|. +|. ||...+ +..++.... +......+.++.|.++ ..+++ +..|.|. ...+
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~--~S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLL--HTTDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEE--EECCC
Confidence 56888999986666666664 454 444432 334433211 1112334778888654 33443 4455432 2222
Q ss_pred CcEEEEeC---CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC
Q 042434 299 GICKHTFG---DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK 375 (517)
Q Consensus 299 ~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 375 (517)
|+.-..+. ........+....++.. ..++..|. ++.-+-.++.-........+.+.++.+.|++.+++++ ..|
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~~~~-~~~g~~G~--i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g-~~G 193 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGPGTA-EMATNVGA--IYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVS-SRG 193 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECCCcc-eeeeccce--EEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEe-CCc
Confidence 32222221 11111222222222323 33444554 5555545544444444444578899999988666554 455
Q ss_pred cEEE-EECCC--ceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC--CccceEEeCcccCceEEEeecCCCC
Q 042434 376 DIRI-LNLGT--YAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK--WEKPFKYTGHSQNKYVIRSCFGGLD 450 (517)
Q Consensus 376 ~i~i-~d~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~ 450 (517)
.+.. +|-.. ...........++.+.+.++++.++++ ..|.+.+=....+ +..+.. ........+..+.+.++
T Consensus 194 ~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~--~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 194 NFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPII--PEITNGYGYLDLAYRTP 270 (334)
T ss_pred eEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccC--CccccccceeeEEEcCC
Confidence 4443 23222 223333455678999999998877665 4565543222222 121110 00101122344444677
Q ss_pred CcEEEEecCCCcEEEEecCCCceeEEec---CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 451 GTFIASGSENSQIYIWNRRNSKPIEILS---GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 451 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
+..+++ +.+|.+. .....|+.-.... .-....+.+.|..++ . .+..+..|.|.-|+-.
T Consensus 271 ~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~-~-~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 271 GEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPE-K-GFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCC-c-eEEECCCceEEEecCC
Confidence 765554 4567554 3444454433332 222457788887666 3 4557788888888754
No 399
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.08 E-value=0.4 Score=48.26 Aligned_cols=237 Identities=12% Similarity=0.106 Sum_probs=125.8
Q ss_pred CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC---CCCeEEEEe------CCCeEEEEECCCCcEEEEe
Q 042434 235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP---DDTKLLTCG------NAEVLKLWDVETGICKHTF 305 (517)
Q Consensus 235 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~---~~~~l~s~~------~dg~i~iwd~~~~~~~~~~ 305 (517)
..++.++.|+.+.-.|..+++..-. .....+... ..+.-+| ++ .++++. .+|.|..+|.++|+.+-.+
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~-~~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWS-KKNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEee-ccccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 4567777889999889877754211 111111110 0111122 34 455543 2689999999999887765
Q ss_pred CCCC-------------------------------CceE-EEEEeCCCCeEEEeeCC-----C---------ceeEEEEe
Q 042434 306 GDHG-------------------------------FIVS-SCAWFPDSKRLVCGSSD-----T---------EKGIFMCD 339 (517)
Q Consensus 306 ~~~~-------------------------------~~v~-~i~~~~~~~~l~~~~~d-----~---------~v~i~~~~ 339 (517)
..-. ..++ .+++.|...+++.+..+ + +-.+.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 3211 1111 23555555666665522 2 11255566
Q ss_pred CCCCeeE-eeeC-cC-------CCceEEEEEccCCC---EEEEEeCCCcEEEEECCCceEE---------ee----c-c-
Q 042434 340 CDGNEIK-AWRG-TR-------IPKVLDLAVTPDGE---NLISVLSDKDIRILNLGTYAER---------VI----S-E- 392 (517)
Q Consensus 340 ~~~~~~~-~~~~-~~-------~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~---------~~----~-~- 392 (517)
.++.+++ .++. +| .....-+.+..+|+ .++.+..+|.+++.|-.+++.. .. . .
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 6644443 2221 11 01112223334665 7778999999999999887632 00 0 0
Q ss_pred CCC----------------------------eeEEEEcCCCCEEEEEeCC------------------------------
Q 042434 393 EHP----------------------------ITSLSVSVDCKNFIVNLNS------------------------------ 414 (517)
Q Consensus 393 ~~~----------------------------i~~~~~s~~~~~l~~~~~d------------------------------ 414 (517)
..+ -..++++|+...+++...+
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~ 437 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD 437 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence 000 0125666666665554443
Q ss_pred ---CeEEEEEcCCCCccceEEeCcccC-ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCC
Q 042434 415 ---QEIHMWDVAGKWEKPFKYTGHSQN-KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH 480 (517)
Q Consensus 415 ---~~i~~~d~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 480 (517)
|.+.-+|+.++ +........... ...+ .-.+.+++.++.+|.++.+|.++|+.+....-.
T Consensus 438 ~~~g~l~AiD~~tG-k~~W~~~~~~p~~~~~l-----~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 438 DHMGSLIAWDPITG-KIVWEHKEDFPLWGGVL-----ATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCceeEEEEeCCCC-ceeeEecCCCCCCCcce-----EECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 23555565554 222222211110 0001 114557778888999999999999999888653
No 400
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.04 E-value=0.2 Score=44.23 Aligned_cols=196 Identities=8% Similarity=0.028 Sum_probs=115.6
Q ss_pred EEEEeCCC-CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccCCCEEEEEeCCCcEE
Q 042434 301 CKHTFGDH-GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPDGENLISVLSDKDIR 378 (517)
Q Consensus 301 ~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 378 (517)
.+.++... ..-...+.|..++.++-+.+.-|.-.+..+|..+..+. .......-.-..++... ++.....-.++...
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEE
Confidence 34555322 33445688878888999999999888999999865543 33333222334444443 33444556788999
Q ss_pred EEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC--ceEEEeecCCCCCcEEE
Q 042434 379 ILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN--KYVIRSCFGGLDGTFIA 455 (517)
Q Consensus 379 i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~ 455 (517)
+||..+.+ .........-..++ .+++.++.+.....++++|..+. .....+.....+ ...+.-+-+ -+|...|
T Consensus 114 ~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNELE~-i~G~IyA 189 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNELEY-INGKIYA 189 (264)
T ss_dssp EEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEE-ETTEEEE
T ss_pred EEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeEEE-EcCEEEE
Confidence 99999877 33333334444555 57788888888899999998764 334443332221 111111111 2566666
Q ss_pred EecCCCcEEEEecCCCceeEEecC------------C---CCCeeEEEecCCCCcEEEEee
Q 042434 456 SGSENSQIYIWNRRNSKPIEILSG------------H---SMTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 456 ~~~~dg~i~iwd~~~~~~~~~~~~------------h---~~~v~~v~~~~~~~~~l~s~~ 501 (517)
=.-....|...|..+|+.+..+.. + .+..+.|||.|....+++||-
T Consensus 190 NVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 190 NVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 565666788889999988776521 1 356899999998867777763
No 401
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.02 E-value=0.38 Score=46.98 Aligned_cols=123 Identities=14% Similarity=0.183 Sum_probs=77.3
Q ss_pred cccCcEEEEEECCC----CCEEEEeeCCCcEEEEEecCC--CeeeEEEEecc-C--CC--CEEEEEECCCCCeEEEEeCC
Q 042434 220 EHKNEVWFVQFSNN----GEYLASSSSDCSAIIWKVLED--SKLTLKHTLRS-H--QN--PVSFVAWSPDDTKLLTCGNA 288 (517)
Q Consensus 220 ~h~~~v~~~~~s~~----~~~l~t~~~dg~i~iw~~~~~--~~~~~~~~~~~-h--~~--~v~~l~~s~~~~~l~s~~~d 288 (517)
|.-..|..+.|.|- ...|.+......|.||.+... +..+....-.. . .- --..+.|+|....|++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 44567889999994 224444456689999988521 11111111111 1 11 12457899999888877666
Q ss_pred CeEEEEECCCC--cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe
Q 042434 289 EVLKLWDVETG--ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE 344 (517)
Q Consensus 289 g~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~ 344 (517)
..-.++++... +....+ ...+.|.|.+|.+||+.|+++-.. .+.-|+||...+.
T Consensus 134 dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~qKt 189 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSAQKT 189 (671)
T ss_pred ceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCC-eEEEEEecCchhh
Confidence 55556666433 233334 557789999999999998887554 5678999976543
No 402
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.99 E-value=0.57 Score=48.58 Aligned_cols=95 Identities=14% Similarity=0.139 Sum_probs=59.0
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee
Q 042434 267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET-GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI 345 (517)
Q Consensus 267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~ 345 (517)
.-.|..+.++|+|.+++..|..|. .|-.+.. .-....+.+....|.|-.+.-+..++ ..+
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~~~----------------- 144 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-TSN----------------- 144 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhc-cCC-----------------
Confidence 346889999999999999888664 4444421 11112233334445444443333222 111
Q ss_pred EeeeCcCCCceEEEEEccC---CCEEEEEeCCCcEEEEECCCce
Q 042434 346 KAWRGTRIPKVLDLAVTPD---GENLISVLSDKDIRILNLGTYA 386 (517)
Q Consensus 346 ~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~ 386 (517)
....|..+.|+|. +..|++-+.|+++++||+....
T Consensus 145 ------~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 145 ------SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred ------CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 1126788899886 4789999999999999996543
No 403
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.96 E-value=0.34 Score=45.53 Aligned_cols=238 Identities=17% Similarity=0.109 Sum_probs=114.7
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe----ccCCCCEEEEEECCC---CCeEE-EEeCC-------
Q 042434 224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL----RSHQNPVSFVAWSPD---DTKLL-TCGNA------- 288 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~----~~h~~~v~~l~~s~~---~~~l~-s~~~d------- 288 (517)
..+.++|.|||+++++ ...|.|++++ ..+.....+..+ .........++++|+ +.+|. +.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4678999999987776 5699999998 333221223332 234567899999994 33443 33321
Q ss_pred -CeEEEEECCCC-------cEE-EEeCC---CCCceEEEEEeCCCCeEEEeeCCCc-----------eeEEEEeCCCCe-
Q 042434 289 -EVLKLWDVETG-------ICK-HTFGD---HGFIVSSCAWFPDSKRLVCGSSDTE-----------KGIFMCDCDGNE- 344 (517)
Q Consensus 289 -g~i~iwd~~~~-------~~~-~~~~~---~~~~v~~i~~~~~~~~l~~~~~d~~-----------v~i~~~~~~~~~- 344 (517)
..|.-|....+ +.+ ..... ....-..+.|.|||.+.++.+..+. -+|...+..+..
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 24444544333 111 11112 2344567999999977666544332 136666665531
Q ss_pred ------------eEeeeCcCCCceEEEEEccC-CCEEEEE-eCCCcEEEEECCCce------------------------
Q 042434 345 ------------IKAWRGTRIPKVLDLAVTPD-GENLISV-LSDKDIRILNLGTYA------------------------ 386 (517)
Q Consensus 345 ------------~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~~dg~i~i~d~~~~~------------------------ 386 (517)
...+.... .....++|+|. |.++++= +.++.=.|.-+..+.
T Consensus 161 ~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 11111111 24567999998 5544332 222222222111111
Q ss_pred ------EEeeccCCCeeEEEEcC-------CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcE
Q 042434 387 ------ERVISEEHPITSLSVSV-------DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453 (517)
Q Consensus 387 ------~~~~~~~~~i~~~~~s~-------~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 453 (517)
.....+...+..+.|-. .+.++++....+.|....+...........-.......+..+...|||.+
T Consensus 240 ~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 240 PGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred CCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence 01112223455555543 34556666666778877775442211111111111113444555777777
Q ss_pred EEEecCCCcEE
Q 042434 454 IASGSENSQIY 464 (517)
Q Consensus 454 l~~~~~dg~i~ 464 (517)
.++...+|.|+
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 77776777664
No 404
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.95 E-value=0.4 Score=46.05 Aligned_cols=269 Identities=10% Similarity=0.065 Sum_probs=137.2
Q ss_pred CCCEEEEeeCCCcEEEEEecCCCe-eeEEEEeccCCCCEEEEEECC-----CCCeEEEEeCCCeEEEEECCC--Cc----
Q 042434 233 NGEYLASSSSDCSAIIWKVLEDSK-LTLKHTLRSHQNPVSFVAWSP-----DDTKLLTCGNAEVLKLWDVET--GI---- 300 (517)
Q Consensus 233 ~~~~l~t~~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~--~~---- 300 (517)
+...+++||..|.++||+...+.. ......-..-..+|..+..-+ +...||+ =.-..+.||.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 346899999999999999854321 111111112357788777532 2234444 4456788887621 11
Q ss_pred ---EEEEeCCC--CCceEEEEEeC----C-CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEE
Q 042434 301 ---CKHTFGDH--GFIVSSCAWFP----D-SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLIS 370 (517)
Q Consensus 301 ---~~~~~~~~--~~~v~~i~~~~----~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 370 (517)
.+...-.| ......+++-| . ..++.+-+.||. +.+++-+......+.... --...+++.+....+++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~--L~~feqe~~~f~~~lp~~-llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGS--LSFFEQESFAFSRFLPDF-LLPGPLCYCPRTDSFVT 191 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCce--EEEEeCCcEEEEEEcCCC-CCCcCeEEeecCCEEEE
Confidence 11111122 22233344333 2 357888899999 777776655443333221 13345788888889999
Q ss_pred EeCCCcEEEEECCCce------------------------EEeeccCCCeeEEEE---cCCCCEEEEEeCCCeEEEEEcC
Q 042434 371 VLSDKDIRILNLGTYA------------------------ERVISEEHPITSLSV---SVDCKNFIVNLNSQEIHMWDVA 423 (517)
Q Consensus 371 ~~~dg~i~i~d~~~~~------------------------~~~~~~~~~i~~~~~---s~~~~~l~~~~~d~~i~~~d~~ 423 (517)
++.+..+..|...... .+...-+..+..+.. +.....+++-+ ...+.+.+..
T Consensus 192 ~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~ 270 (418)
T PF14727_consen 192 ASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN 270 (418)
T ss_pred ecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC
Confidence 9999888888752211 112222333333332 22222222222 3344444443
Q ss_pred CCCccceEEeCcccCceEEEee-cCCCC-CcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEec--CCCCcEEEE
Q 042434 424 GKWEKPFKYTGHSQNKYVIRSC-FGGLD-GTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWN--PKRPKMLAS 499 (517)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~i~~~-~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~--~~~~~~l~s 499 (517)
+.-...+++......-...... ...++ +..++.++.++++.||.= .+++...+....+| ++... ++-+.++++
T Consensus 271 G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~ 347 (418)
T PF14727_consen 271 GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVS 347 (418)
T ss_pred CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCE-EEEecccCCCCceEEE
Confidence 3222222222222111111110 11122 225888899999999963 34444433333333 33322 222358999
Q ss_pred eeCCCcEEEe
Q 042434 500 ASDDHTIRIW 509 (517)
Q Consensus 500 ~~~dg~v~iw 509 (517)
-+.+|.+.+-
T Consensus 348 Ls~~G~L~v~ 357 (418)
T PF14727_consen 348 LSDEGQLSVS 357 (418)
T ss_pred EcCCCcEEEE
Confidence 9999988764
No 405
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.94 E-value=0.31 Score=44.66 Aligned_cols=182 Identities=10% Similarity=0.070 Sum_probs=87.6
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-CcE-
Q 042434 224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET-GIC- 301 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~- 301 (517)
...++.|..+ ..+++| ..| +.+...+.+..+..+..-..-.+....+....++..+++ +..|.| |...+ |+.
T Consensus 63 ~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~i--y~T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGAI--YRTTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT--E--EEESSTTSSE
T ss_pred eEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCcE--EEeCCCCCCe
Confidence 3566777653 344444 444 444455556666544322222333444444444433333 444543 33322 322
Q ss_pred EEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEE
Q 042434 302 KHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILN 381 (517)
Q Consensus 302 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 381 (517)
..........+..+.-++||++++++..... +..|+.....-..........+..|.|.|++...+++ ..|.|+.=+
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~--~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNF--YSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSE--EEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccE--EEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 2333455677888889999998888765553 4466665444444444445689999999998766644 888888887
Q ss_pred CC-Cce---EEee---ccCCCeeEEEEcCCCCEEEEEeCC
Q 042434 382 LG-TYA---ERVI---SEEHPITSLSVSVDCKNFIVNLNS 414 (517)
Q Consensus 382 ~~-~~~---~~~~---~~~~~i~~~~~s~~~~~l~~~~~d 414 (517)
.. ... .... .....+..+++.+++...++++..
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 22 222 1111 223347889999987777766544
No 406
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0058 Score=55.85 Aligned_cols=103 Identities=18% Similarity=0.298 Sum_probs=83.5
Q ss_pred HHHHHHHHHhhcChHHHHHHHhhhcCeeec-C------hhHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchhhhh
Q 042434 19 FVRVVVQCLYSLGYQKSASCLESESGVSYK-S------KGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFK 91 (517)
Q Consensus 19 ~~~li~q~L~~~g~~~s~~~l~~Esg~~~~-~------~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~ 91 (517)
+..+|..|+...|..+.+..|-+|+|...+ . ....++.+++..++-..|++-+..-...-......+-|.+..
T Consensus 119 ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s~LE~~Lh~ 198 (394)
T KOG2817|consen 119 LNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSSSLEFKLHS 198 (394)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccccHHHHHHH
Confidence 588999999999999999999999999764 2 246677889999999999888876432111223467889999
Q ss_pred hhhhHhhhcCChh--HHHHHHHhhcccCCCCh
Q 042434 92 QCFLEYLNRGDDS--LALNVLRKRVSSLQMSK 121 (517)
Q Consensus 92 ~~~~el~~~~~~~--~a~~~lr~~~~~~~~~~ 121 (517)
+.|++++..|... +|++..|+.+.|+....
T Consensus 199 l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~ 230 (394)
T KOG2817|consen 199 LHFLSLIRGGKSDQREALRYARTHFAPFVADH 230 (394)
T ss_pred HHHHHHHhcCCcCcHHHHHHHHHhcCccccch
Confidence 9999999998877 99999999999986643
No 407
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.0052 Score=63.15 Aligned_cols=102 Identities=11% Similarity=0.122 Sum_probs=73.7
Q ss_pred cCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCc
Q 042434 363 PDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNK 439 (517)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 439 (517)
-.+..++.|++.|.+...|....- ........+|++++|+.+|+.++.|-.+|.|.+||+..+ ...+.+..+..+.
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKVITEHGAPV 175 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceeeeeecCCcc
Confidence 345578889999999998887643 233345678999999999999999999999999999876 5555555555443
Q ss_pred eEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434 440 YVIRSCFGGLDGTFIASGSENSQIYIWN 467 (517)
Q Consensus 440 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd 467 (517)
..+-..-+..++..++++...|. +|.
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 33333333456667888887786 554
No 408
>PRK10115 protease 2; Provisional
Probab=96.85 E-value=0.78 Score=47.87 Aligned_cols=238 Identities=7% Similarity=-0.002 Sum_probs=115.7
Q ss_pred CcEEEEEECCCCCEEEEeeC-----CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC------CeE
Q 042434 223 NEVWFVQFSNNGEYLASSSS-----DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA------EVL 291 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d------g~i 291 (517)
-.+..+.+||||++|+.+.. ...+++-|+.++..+ ...+. ..-..++|++|++.|+.+..+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l--~~~i~---~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY--PELLD---NVEPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC--Ccccc---CcceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 35667889999999987633 234778888655311 11111 111569999999877665432 368
Q ss_pred EEEECCCC--cEEEEeCCCCCceE-EEEEeCCCCeEEEeeCCCc-eeEEEEeCC--CCeeEeeeCcCCCceEEEEEccCC
Q 042434 292 KLWDVETG--ICKHTFGDHGFIVS-SCAWFPDSKRLVCGSSDTE-KGIFMCDCD--GNEIKAWRGTRIPKVLDLAVTPDG 365 (517)
Q Consensus 292 ~iwd~~~~--~~~~~~~~~~~~v~-~i~~~~~~~~l~~~~~d~~-v~i~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~ 365 (517)
..+++.++ +-...+........ .+..+.++++++..+..+. -.++.++.. ............+....+. +..
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 279 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ- 279 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-
Confidence 88899887 33444443333333 3333447877665544332 237777742 2221222222212222222 222
Q ss_pred CEEEEEeCC----CcEEEEECCC-ce-EEeecc--CCCeeEEEEcCCCCEEEEEeCCCeEEE--EEcCCCCccceEEeCc
Q 042434 366 ENLISVLSD----KDIRILNLGT-YA-ERVISE--EHPITSLSVSVDCKNFIVNLNSQEIHM--WDVAGKWEKPFKYTGH 435 (517)
Q Consensus 366 ~~l~~~~~d----g~i~i~d~~~-~~-~~~~~~--~~~i~~~~~s~~~~~l~~~~~d~~i~~--~d~~~~~~~~~~~~~~ 435 (517)
..+...+.. ..|...++.. .. .....+ ...+..+.++ .+..+++...++.-++ ++..+. ....+.-
T Consensus 280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~--~~~~l~~- 355 (686)
T PRK10115 280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR--EVIGIAF- 355 (686)
T ss_pred CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC--ceEEecC-
Confidence 333333322 2344445542 22 333444 2357777776 2234444455665444 444322 2222221
Q ss_pred ccCceEEEeecCC--CCCc-EEEEecC---CCcEEEEecCCCc
Q 042434 436 SQNKYVIRSCFGG--LDGT-FIASGSE---NSQIYIWNRRNSK 472 (517)
Q Consensus 436 ~~~~~~i~~~~~s--~~~~-~l~~~~~---dg~i~iwd~~~~~ 472 (517)
..... ......+ +++. ++++.+. -+.++.+|..+++
T Consensus 356 ~~~~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 356 DDPAY-VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCCce-EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 11111 1111112 3333 4443332 3678889988765
No 409
>PHA02790 Kelch-like protein; Provisional
Probab=96.81 E-value=0.14 Score=51.07 Aligned_cols=186 Identities=10% Similarity=-0.026 Sum_probs=89.2
Q ss_pred CCCeEEEEeCCC-----eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcC
Q 042434 278 DDTKLLTCGNAE-----VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTR 352 (517)
Q Consensus 278 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~ 352 (517)
++..+++||.++ ++..||..+++....-.-...........-++...+.|+.++.-.+..|+...+.-.......
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 345556666543 567788877654432211111111111223677888888755444788887655433332222
Q ss_pred CCceEEEEEccCCCEEEEEeCCC---cEEEEECCCceEEe-eccCCCe-eEEEEcCCCCEEEEEeCCCeEEEEEcCCC-C
Q 042434 353 IPKVLDLAVTPDGENLISVLSDK---DIRILNLGTYAERV-ISEEHPI-TSLSVSVDCKNFIVNLNSQEIHMWDVAGK-W 426 (517)
Q Consensus 353 ~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~-~~~~~~i-~~~~~s~~~~~l~~~~~d~~i~~~d~~~~-~ 426 (517)
..........-+|+..+.|+.++ .+..||..+..-.. .....+. ...+..-+++..+.| |.+..||..+. |
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W 427 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTW 427 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcE
Confidence 11222222334677777777553 47789987766221 1111111 111223355555555 34677887543 2
Q ss_pred ccceEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCCC
Q 042434 427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNS 471 (517)
Q Consensus 427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 471 (517)
........... ....+ -.+|+..+.||.+ ..+..||..++
T Consensus 428 ~~~~~m~~~r~---~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 428 TLIDDPIYPRD---NPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred eEcCCCCCCcc---ccEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 22221111111 11111 2367777777754 23555555544
No 410
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.78 E-value=0.0049 Score=38.29 Aligned_cols=34 Identities=21% Similarity=0.529 Sum_probs=29.8
Q ss_pred CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 481 SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 481 ~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
...|..++|+|.. .++|.++.||.|.++.+ ++++
T Consensus 11 ~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTM-DLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCC-CEEEEEECCCeEEEEEC-CCcC
Confidence 4579999999999 79999999999999999 5544
No 411
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.74 E-value=0.0066 Score=37.72 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=30.2
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434 267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC 301 (517)
Q Consensus 267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 301 (517)
...|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 467999999999999999999999999998 5544
No 412
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.73 E-value=0.37 Score=42.51 Aligned_cols=202 Identities=15% Similarity=0.128 Sum_probs=102.6
Q ss_pred EEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCee-EeeeCcCC-CceEEEEEccCCCEEEEEeCC-----CcEEEEECCC
Q 042434 313 SSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRI-PKVLDLAVTPDGENLISVLSD-----KDIRILNLGT 384 (517)
Q Consensus 313 ~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~ 384 (517)
..++++|.. .-++.+-.-|+- .+++|..+... ........ ...-.=.|||||.+|+..-.| |.|-|||.+.
T Consensus 71 Hgi~~~p~~~ravafARrPGtf-~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTF-AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCce-EEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 345566643 334445455542 44556554322 11111110 122234789999988876543 6799999885
Q ss_pred ce---EEeeccCCCeeEEEEcCCCCEEEEEeCC------------------CeEEEEEcCCCCccceEEe-CcccCceEE
Q 042434 385 YA---ERVISEEHPITSLSVSVDCKNFIVNLNS------------------QEIHMWDVAGKWEKPFKYT-GHSQNKYVI 442 (517)
Q Consensus 385 ~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d------------------~~i~~~d~~~~~~~~~~~~-~~~~~~~~i 442 (517)
.- -....+.-....+.+.+||+.++++... -.+.+.|..++ ..+.+.. ........+
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG-~liekh~Lp~~l~~lSi 228 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATG-NLIEKHTLPASLRQLSI 228 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecccc-chhhhccCchhhhhcce
Confidence 43 2334455567789999999998876431 12334443222 1111111 111112234
Q ss_pred EeecCCCCCcEEEEecCCCc-----EEEEecCCCceeEEecC-------CCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 443 RSCFGGLDGTFIASGSENSQ-----IYIWNRRNSKPIEILSG-------HSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 443 ~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~-------h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
+.+...+||..++.+-..|. -.+=....++++.-+.. ....|-+|+.+.+.....+|.-..+...+||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 44554555554443322221 11111223444443332 2345778888765534555555666778899
Q ss_pred CCCCCC
Q 042434 511 PCQSSE 516 (517)
Q Consensus 511 ~~~~~~ 516 (517)
..+|.-
T Consensus 309 a~tG~v 314 (366)
T COG3490 309 AATGAV 314 (366)
T ss_pred cCCCcE
Confidence 988763
No 413
>PHA03098 kelch-like protein; Provisional
Probab=96.61 E-value=0.16 Score=51.52 Aligned_cols=188 Identities=10% Similarity=0.065 Sum_probs=92.1
Q ss_pred CCCeEEEEeCCC------eEEEEECCCCcEEEEeCC--CCCceEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCCCeeE
Q 042434 278 DDTKLLTCGNAE------VLKLWDVETGICKHTFGD--HGFIVSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDGNEIK 346 (517)
Q Consensus 278 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~~~~~ 346 (517)
++..++.||.++ .+..||..+++....-.. .......+ .-++..++.||.++. -.++.||..++.-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456667776543 577888877765332111 11112222 236777788876532 12677787765433
Q ss_pred eeeCcCCCceEEEEEccCCCEEEEEeCC------CcEEEEECCCceEEeec-cCCC-eeEEEEcCCCCEEEEEeCC----
Q 042434 347 AWRGTRIPKVLDLAVTPDGENLISVLSD------KDIRILNLGTYAERVIS-EEHP-ITSLSVSVDCKNFIVNLNS---- 414 (517)
Q Consensus 347 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~-~~~~-i~~~~~s~~~~~l~~~~~d---- 414 (517)
.......+........-+++..+.|+.+ ..+..||..+.+-.... ...+ ....+...++..++.|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 451 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN 451 (534)
T ss_pred eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC
Confidence 3222111111111223356666666632 35889998876621111 1111 1111222355666666542
Q ss_pred ----CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCCCc
Q 042434 415 ----QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNSK 472 (517)
Q Consensus 415 ----~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 472 (517)
..+..||..+. |............ ...+ ..+++.++.|+.+ ..+.+||..+.+
T Consensus 452 ~~~~~~v~~yd~~~~~W~~~~~~~~~r~~---~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 452 IKVYNIVESYNPVTNKWTELSSLNFPRIN---ASLC--IFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CcccceEEEecCCCCceeeCCCCCccccc---ceEE--EECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 23788888653 2222211111111 1111 1267777777754 467888877654
No 414
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.59 E-value=0.51 Score=42.42 Aligned_cols=145 Identities=18% Similarity=0.187 Sum_probs=89.1
Q ss_pred ceEEEEEccCCCEEEEEe---CCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEE-cCCCCccce
Q 042434 355 KVLDLAVTPDGENLISVL---SDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWD-VAGKWEKPF 430 (517)
Q Consensus 355 ~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d-~~~~~~~~~ 430 (517)
.+.+.+++++++.++... ....++++.......... ....+...+|++++....+...+....++. ...+.....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 688899999999877766 334566665544333322 445888899999987777766666666663 222212222
Q ss_pred EEeCcccCceEEEeecCCCCCcEEEEec---CCCcEEEEecC---CC------ceeEEecCCCCCeeEEEecCCCCcEEE
Q 042434 431 KYTGHSQNKYVIRSCFGGLDGTFIASGS---ENSQIYIWNRR---NS------KPIEILSGHSMTVNCVSWNPKRPKMLA 498 (517)
Q Consensus 431 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iwd~~---~~------~~~~~~~~h~~~v~~v~~~~~~~~~l~ 498 (517)
......... .|..+.+||||..++... .++.|++--+. .+ .++.........+++++|.+++ .+++
T Consensus 104 ~v~~~~~~~-~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~-~L~V 181 (253)
T PF10647_consen 104 EVDWPGLRG-RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS-TLVV 181 (253)
T ss_pred EecccccCC-ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC-EEEE
Confidence 222221111 577777899999887765 35677776543 23 1222222345689999999998 4555
Q ss_pred EeeC
Q 042434 499 SASD 502 (517)
Q Consensus 499 s~~~ 502 (517)
.+..
T Consensus 182 ~~~~ 185 (253)
T PF10647_consen 182 LGRS 185 (253)
T ss_pred EeCC
Confidence 4443
No 415
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.59 E-value=0.14 Score=49.06 Aligned_cols=147 Identities=17% Similarity=0.192 Sum_probs=85.0
Q ss_pred CcEEEEEECCCCCEEEEee-----------CCC-cEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434 223 NEVWFVQFSNNGEYLASSS-----------SDC-SAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE 289 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~-----------~dg-~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 289 (517)
.....++|.++|+++++-. ..+ .|.+++-.++ ........+...-.....+++.+++ .++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4566889999999777642 223 6766654322 2222333443334456889999988 444 44443
Q ss_pred eEEEEECCC-----CcE--E-EEeCC----CCCceEEEEEeCCCCeEEEeeCCCc-----------------eeEEEEeC
Q 042434 290 VLKLWDVET-----GIC--K-HTFGD----HGFIVSSCAWFPDSKRLVCGSSDTE-----------------KGIFMCDC 340 (517)
Q Consensus 290 ~i~iwd~~~-----~~~--~-~~~~~----~~~~v~~i~~~~~~~~l~~~~~d~~-----------------v~i~~~~~ 340 (517)
..++.|... ++. + ..+.. +......++|.|||.+.++-+..+. -.++.++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 333434421 121 1 12222 1344678999999987665542100 13788888
Q ss_pred CCCeeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434 341 DGNEIKAWRGTRIPKVLDLAVTPDGENLISVL 372 (517)
Q Consensus 341 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 372 (517)
.+.....+.... .....++|+++|+.+++-.
T Consensus 172 dg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 776666554433 3567889999988876543
No 416
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.56 E-value=0.48 Score=41.63 Aligned_cols=212 Identities=12% Similarity=0.008 Sum_probs=138.1
Q ss_pred CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEee
Q 042434 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAW 348 (517)
Q Consensus 269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~ 348 (517)
.-..++-.|||..-+++...|.|--.|..+|+....--+.......|..-|||..-++-+... |..++.++..+..+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~a---I~R~dpkt~evt~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLA---IGRLDPKTLEVTRF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcce---eEEecCcccceEEe
Confidence 345677788998888888888888889999987665445666667788888888776654442 77777766666555
Q ss_pred eC---cCCCceEEEEEccCCCEEEEEeCC---------CcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCe
Q 042434 349 RG---TRIPKVLDLAVTPDGENLISVLSD---------KDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQE 416 (517)
Q Consensus 349 ~~---~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 416 (517)
.. +.........|.+.|+.-+++... +.|++|+. ........++..|+|...++.-.++.
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa--------PqG~gpyGi~atpdGsvwyaslagna 211 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA--------PQGGGPYGICATPDGSVWYASLAGNA 211 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeecc--------CCCCCCcceEECCCCcEEEEeccccc
Confidence 43 233467788999999988887532 23444443 23456788999999999888888888
Q ss_pred EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce-eEEecCCCCCeeEEEecCCC
Q 042434 417 IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP-IEILSGHSMTVNCVSWNPKR 493 (517)
Q Consensus 417 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~v~~~~~~ 493 (517)
|...|.......+. ..........+-++.+|.|+.-++....+.++-+|..+..- -..+.+....-.++.....+
T Consensus 212 iaridp~~~~aev~--p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~g 287 (353)
T COG4257 212 IARIDPFAGHAEVV--PQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHG 287 (353)
T ss_pred eEEcccccCCccee--cCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCC
Confidence 88888765422222 11111111233444578888888877788888888665432 12233333444455554444
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.52 E-value=0.24 Score=48.23 Aligned_cols=170 Identities=15% Similarity=0.218 Sum_probs=95.1
Q ss_pred CcEEEEEECCCCCEE-EEee--CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC----CCeEEEEeCCCeEEEEE
Q 042434 223 NEVWFVQFSNNGEYL-ASSS--SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD----DTKLLTCGNAEVLKLWD 295 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l-~t~~--~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~~l~s~~~dg~i~iwd 295 (517)
.+|..++|. ||+.+ .|.- .+|.+++=|. .. -+.-..|..+.|.|- ...+++.-....|.||.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------~v----iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------KV----IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc------cE----eeccceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 467778885 44444 3331 2333333221 12 223356899999984 33455556677999998
Q ss_pred CC-----CCcEEEEeCC-----CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCC
Q 042434 296 VE-----TGICKHTFGD-----HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG 365 (517)
Q Consensus 296 ~~-----~~~~~~~~~~-----~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 365 (517)
+. +++.+..-.. ..--...+.|+|....|++-.....-.++....++..++.-. ...+.|.|.+|.+||
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDG 167 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcC
Confidence 74 2222221111 111224578999988887766554322333444444444433 334689999999999
Q ss_pred CEEEEEeCC-CcEEEEECCCce------EEeeccCCCeeEEEEcCC
Q 042434 366 ENLISVLSD-KDIRILNLGTYA------ERVISEEHPITSLSVSVD 404 (517)
Q Consensus 366 ~~l~~~~~d-g~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~ 404 (517)
+.++++-.. =.-++||-.... ...+.-++.|.++.-.-|
T Consensus 168 ~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d 213 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD 213 (671)
T ss_pred CEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc
Confidence 987766443 356788864433 333444455555544433
No 418
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.48 E-value=0.0079 Score=50.81 Aligned_cols=138 Identities=14% Similarity=0.035 Sum_probs=80.7
Q ss_pred EEEeCCCeEEEEECCCCcEEEE-eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434 283 LTCGNAEVLKLWDVETGICKHT-FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV 361 (517)
Q Consensus 283 ~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 361 (517)
...+.||.|.-+++..-+.... -..+... .....-+..+++|+.+|.+.+|.|+..+................+..
T Consensus 34 ~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 34 RATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred ccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 3446677777666543221110 0011111 11122356799999999988888876665544444433323333444
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCce--EEeeccC-CCeeEEEEcCCCCEEEEE--eCCCeEEEEEcC
Q 042434 362 TPDGENLISVLSDKDIRILNLGTYA--ERVISEE-HPITSLSVSVDCKNFIVN--LNSQEIHMWDVA 423 (517)
Q Consensus 362 ~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~-~~i~~~~~s~~~~~l~~~--~~d~~i~~~d~~ 423 (517)
..++.+..++..+|.|+.|++.-.+ .....|. .+......+..++.+..+ +.+..++.|++.
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 4566688999999999999987766 2333333 445555555555666666 666667777764
No 419
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.30 E-value=1.1 Score=43.01 Aligned_cols=76 Identities=11% Similarity=0.112 Sum_probs=51.9
Q ss_pred EEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCC-eeEEEecCC-----------------CCcEEEEeeCC
Q 042434 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMT-VNCVSWNPK-----------------RPKMLASASDD 503 (517)
Q Consensus 442 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~v~~~~~-----------------~~~~l~s~~~d 503 (517)
+..+..+|++++.|+...=|.|.++|+.++..++.++|-.+. +.-+..... .-.+++-+..-
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR 389 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR 389 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence 445566899999998877799999999999888887764432 111111110 11244556678
Q ss_pred CcEEEeCCCCCCCC
Q 042434 504 HTIRIWGPCQSSEV 517 (517)
Q Consensus 504 g~v~iw~~~~~~~v 517 (517)
|.|-||.+.+|.+|
T Consensus 390 g~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 390 GILEVWSMRQGPRV 403 (415)
T ss_pred CeEEEEecCCCCEE
Confidence 99999999988754
No 420
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.09 E-value=1 Score=42.79 Aligned_cols=181 Identities=13% Similarity=0.121 Sum_probs=85.9
Q ss_pred EEEECCCCCEEEEe--eC----CCcEEEEEecCCCeeeEEEEeccC---CCCEEEEEECCCCCeEEEEeC----------
Q 042434 227 FVQFSNNGEYLASS--SS----DCSAIIWKVLEDSKLTLKHTLRSH---QNPVSFVAWSPDDTKLLTCGN---------- 287 (517)
Q Consensus 227 ~~~~s~~~~~l~t~--~~----dg~i~iw~~~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~~l~s~~~---------- 287 (517)
.+-.-|+|+.++++ .. -|-+.+.|-+ .+......... ..--..+.|.|..+.++|...
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~---tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf 210 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGE---TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGF 210 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TT---T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT--
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCc---cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCC
Confidence 34445789888875 22 2346666653 23444444332 223456777888888887642
Q ss_pred ----------CCeEEEEECCCCcEEEEeCCCC--CceEEEEEeCC--CCeEEE-eeCCCceeEEEEeCC-C-----CeeE
Q 042434 288 ----------AEVLKLWDVETGICKHTFGDHG--FIVSSCAWFPD--SKRLVC-GSSDTEKGIFMCDCD-G-----NEIK 346 (517)
Q Consensus 288 ----------dg~i~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~--~~~l~~-~~~d~~v~i~~~~~~-~-----~~~~ 346 (517)
..++.+||+.+.+.++++.-.. ..+..+.|..+ ..+=++ +.-..+ ||.|-.. . +.+.
T Consensus 211 ~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~--i~~~~k~~~g~W~a~kVi 288 (461)
T PF05694_consen 211 NPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSS--IWRFYKDDDGEWAAEKVI 288 (461)
T ss_dssp -TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EE--EEEEEE-ETTEEEEEEEE
T ss_pred ChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccce--EEEEEEcCCCCeeeeEEE
Confidence 3489999999999999886432 34567777654 334333 333444 7766542 1 1111
Q ss_pred eeeCc--------C--------CCceEEEEEccCCCEEEEEe-CCCcEEEEECCCce-E-----Eeec------------
Q 042434 347 AWRGT--------R--------IPKVLDLAVTPDGENLISVL-SDKDIRILNLGTYA-E-----RVIS------------ 391 (517)
Q Consensus 347 ~~~~~--------~--------~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~-----~~~~------------ 391 (517)
.+... . .+-|+++.+|.|.++|.+.. ..|.|+.||+.... . ..+.
T Consensus 289 ~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~ 368 (461)
T PF05694_consen 289 DIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVK 368 (461)
T ss_dssp EE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-
T ss_pred ECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccc
Confidence 11110 1 13478999999999887665 58899999998754 1 1111
Q ss_pred ---cCCCeeEEEEcCCCCEEEEEe
Q 042434 392 ---EEHPITSLSVSVDCKNFIVNL 412 (517)
Q Consensus 392 ---~~~~i~~~~~s~~~~~l~~~~ 412 (517)
..+...-+..|.||+.+.+.+
T Consensus 369 g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 369 GKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -----S----EEE-TTSSEEEEE-
T ss_pred ccccCCCCCeEEEccCCeEEEEEe
Confidence 111236677888888877654
No 421
>PHA02790 Kelch-like protein; Provisional
Probab=96.04 E-value=0.63 Score=46.41 Aligned_cols=148 Identities=8% Similarity=-0.059 Sum_probs=71.6
Q ss_pred CCCEEEEeeCCC-----cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC--eEEEEECCCCcEEEEe
Q 042434 233 NGEYLASSSSDC-----SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE--VLKLWDVETGICKHTF 305 (517)
Q Consensus 233 ~~~~l~t~~~dg-----~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~ 305 (517)
++..+++||.++ .+..||..++ .+.....+.........+. -++...+.||.++ .+..||..+++-...-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~-~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISN-NWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCC-EEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 456667777543 4556776543 2222222221111122222 3577777777643 5788887666433221
Q ss_pred CCCCCceEEEEEeCCCCeEEEeeCCCc-eeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 042434 306 GDHGFIVSSCAWFPDSKRLVCGSSDTE-KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT 384 (517)
Q Consensus 306 ~~~~~~v~~i~~~~~~~~l~~~~~d~~-v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 384 (517)
.-...........-+|+..+.|+.++. ..+..||+.+..-..............+..-+++..+.| |.+.+||..+
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCC
Confidence 111111111222236777788876543 225667776554333222211111112223355555555 3577899877
Q ss_pred ce
Q 042434 385 YA 386 (517)
Q Consensus 385 ~~ 386 (517)
.+
T Consensus 425 ~~ 426 (480)
T PHA02790 425 NT 426 (480)
T ss_pred Cc
Confidence 66
No 422
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.02 E-value=2.5 Score=44.43 Aligned_cols=227 Identities=13% Similarity=0.136 Sum_probs=112.8
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCc--------eEEEEEeC----------------CCCeEEEeeCCCcee
Q 042434 279 DTKLLTCGNAEVLKLWDVETGICKHTFGDHGFI--------VSSCAWFP----------------DSKRLVCGSSDTEKG 334 (517)
Q Consensus 279 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~i~~~~----------------~~~~l~~~~~d~~v~ 334 (517)
+..++.++.++.|.-.|..+|+.+-++...... ...+++.. .+..++.++.|+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~-- 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR-- 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCe--
Confidence 557777888899999999999988877533211 11233321 2347888888887
Q ss_pred EEEEeCCC-CeeEeeeCcC-----------CCceEEEEEcc--CCCEEEEEeC----------CCcEEEEECCCceEEe-
Q 042434 335 IFMCDCDG-NEIKAWRGTR-----------IPKVLDLAVTP--DGENLISVLS----------DKDIRILNLGTYAERV- 389 (517)
Q Consensus 335 i~~~~~~~-~~~~~~~~~~-----------~~~i~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~- 389 (517)
++-.|..+ +.+..+.... ......+.-.| .+..+++|+. +|.|+-+|.++++..-
T Consensus 272 LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 272 LIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 77778764 3333221110 00000111111 1345666643 6889999999998322
Q ss_pred eccCCCeeEEEEcCCCCEEEEEeCCC-eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434 390 ISEEHPITSLSVSVDCKNFIVNLNSQ-EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR 468 (517)
Q Consensus 390 ~~~~~~i~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 468 (517)
.....+... ..-+.+.....++.+. ...-+|.+.+ .+..-.+....... . ..+.....-..+.|.-.|.
T Consensus 352 ~~~g~p~~~-~~~~~g~~~~~gg~n~W~~~s~D~~~g--lvy~ptGn~~pd~~------g-~~r~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 352 WDPGNPDPT-APPAPGETYTRNTPNSWSVASYDEKLG--LVYLPMGNQTPDQW------G-GDRTPADEKYSSSLVALDA 421 (764)
T ss_pred EecCCCCcc-cCCCCCCEeccCCCCccCceEEcCCCC--eEEEeCCCcccccc------C-CccccCcccccceEEEEeC
Confidence 221111110 0011233222222221 2333443332 11111111110000 0 0000001122456778888
Q ss_pred CCCceeEEecCCCCCe---------eEEEecC-CC--CcEEEEeeCCCcEEEeCCCCCCCC
Q 042434 469 RNSKPIEILSGHSMTV---------NCVSWNP-KR--PKMLASASDDHTIRIWGPCQSSEV 517 (517)
Q Consensus 469 ~~~~~~~~~~~h~~~v---------~~v~~~~-~~--~~~l~s~~~dg~v~iw~~~~~~~v 517 (517)
++|+..-.++.....+ .=+.+.. +| ...++.++.+|.+.+.|-.+|+.+
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 9998877776411111 1112222 34 127899999999999999998863
No 423
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.96 E-value=1.2 Score=40.11 Aligned_cols=147 Identities=14% Similarity=0.123 Sum_probs=88.2
Q ss_pred cEEEEEECCCCCEEEEee-CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE-CCCCcE
Q 042434 224 EVWFVQFSNNGEYLASSS-SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD-VETGIC 301 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd-~~~~~~ 301 (517)
.+.+.++|++|+.+|... .++.-.+|-...+....... . ...+....|++++...+....+...+++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--T--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--c--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 788999999999887665 23333444443333322221 2 34788889999987777766666666664 333332
Q ss_pred EE-EeCCC--CCceEEEEEeCCCCeEEEeeC---CCceeEEEEeC----CCCee-----EeeeCcCCCceEEEEEccCCC
Q 042434 302 KH-TFGDH--GFIVSSCAWFPDSKRLVCGSS---DTEKGIFMCDC----DGNEI-----KAWRGTRIPKVLDLAVTPDGE 366 (517)
Q Consensus 302 ~~-~~~~~--~~~v~~i~~~~~~~~l~~~~~---d~~v~i~~~~~----~~~~~-----~~~~~~~~~~i~~~~~~~~~~ 366 (517)
.. ..... ...|..+.++|||..++.... ++. +++-.. .+... ..........+..+.|.+++.
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~--v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGR--VYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCe--EEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 21 22222 228999999999999887662 344 444322 22011 111112234789999999998
Q ss_pred EEEEEeCCCc
Q 042434 367 NLISVLSDKD 376 (517)
Q Consensus 367 ~l~~~~~dg~ 376 (517)
+++.+...+.
T Consensus 179 L~V~~~~~~~ 188 (253)
T PF10647_consen 179 LVVLGRSAGG 188 (253)
T ss_pred EEEEeCCCCC
Confidence 8777765543
No 424
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.85 E-value=1.7 Score=41.31 Aligned_cols=196 Identities=14% Similarity=0.134 Sum_probs=89.9
Q ss_pred CCCEEEEee-CCCcEEEEEecCCC-eeeEEEEecc---CC----CCEEEEEECCCCCeEEEEe--C----CCeEEEEECC
Q 042434 233 NGEYLASSS-SDCSAIIWKVLEDS-KLTLKHTLRS---HQ----NPVSFVAWSPDDTKLLTCG--N----AEVLKLWDVE 297 (517)
Q Consensus 233 ~~~~l~t~~-~dg~i~iw~~~~~~-~~~~~~~~~~---h~----~~v~~l~~s~~~~~l~s~~--~----dg~i~iwd~~ 297 (517)
+.++|+..+ ..+.|.|.|+.++. ..+..+++.. +. ..-..+-.-|+|+.++|+- . -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 67889999997433 3344444432 11 1223334457888888752 2 3468889988
Q ss_pred CCcEEEEeCCC---CCceEEEEEeCCCCeEEEeeCCC------------------ceeEEEEeCCCCeeEe-eeCcCCC-
Q 042434 298 TGICKHTFGDH---GFIVSSCAWFPDSKRLVCGSSDT------------------EKGIFMCDCDGNEIKA-WRGTRIP- 354 (517)
Q Consensus 298 ~~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~d~------------------~v~i~~~~~~~~~~~~-~~~~~~~- 354 (517)
+.+........ ..--...-|.|..+.++++.... --++.+||.......+ +.....+
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 88877776542 23345677888888888764321 0138889988765543 3333322
Q ss_pred ceEEEEEccC--CCEE-EEEeCCCcEEEE-ECCCce---EEeec--c------------------CCCeeEEEEcCCCCE
Q 042434 355 KVLDLAVTPD--GENL-ISVLSDKDIRIL-NLGTYA---ERVIS--E------------------EHPITSLSVSVDCKN 407 (517)
Q Consensus 355 ~i~~~~~~~~--~~~l-~~~~~dg~i~i~-d~~~~~---~~~~~--~------------------~~~i~~~~~s~~~~~ 407 (517)
....+.|..+ ..+- +.+.-.++|..| ....+. ...+. . ..-++.+.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3456666544 4433 333334444443 323332 11111 0 234789999999999
Q ss_pred EEEEeC-CCeEEEEEcCCCCcc
Q 042434 408 FIVNLN-SQEIHMWDVAGKWEK 428 (517)
Q Consensus 408 l~~~~~-d~~i~~~d~~~~~~~ 428 (517)
|.+++- .|.++.||+.....+
T Consensus 326 LYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-
T ss_pred EEEEcccCCcEEEEecCCCCCC
Confidence 887765 899999999775333
No 425
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=1.3 Score=39.53 Aligned_cols=274 Identities=12% Similarity=0.054 Sum_probs=142.2
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 300 (517)
-.+-+..+.++.+ +...+..+.-++|.|+.+..+...+..+.. .+.-.++.. .|++..++..|.-+.+.|+.+..
T Consensus 85 ~~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 85 ARDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEECCCCC
Confidence 3455666777654 555556666799999987765544444332 233444444 48888888866677788886643
Q ss_pred ---EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee--CcCCCceEEEEEccCCCEEEEEeCCC
Q 042434 301 ---CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR--GTRIPKVLDLAVTPDGENLISVLSDK 375 (517)
Q Consensus 301 ---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg 375 (517)
....+......-..++.+ |++-..+..|+- +.+.|........+. ....+.+.++..+++..+++. .+-
T Consensus 160 sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~G--L~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv--y~e 233 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGG--LTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV--YDE 233 (370)
T ss_pred CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCC--eEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE--ccc
Confidence 333443444444556665 667777777777 666666543222222 222235777777766555444 344
Q ss_pred cEEEEECCCce-EEeec--cCCCeeEE-EEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc--CceEEEeecCCC
Q 042434 376 DIRILNLGTYA-ERVIS--EEHPITSL-SVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ--NKYVIRSCFGGL 449 (517)
Q Consensus 376 ~i~i~d~~~~~-~~~~~--~~~~i~~~-~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~i~~~~~s~ 449 (517)
-+.+-|..+.+ ...+. ....+.++ .+.-.+++..+...+..+.+.|+.+...+...-.-... ....++ .
T Consensus 234 gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~-----a 308 (370)
T COG5276 234 GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIR-----A 308 (370)
T ss_pred ceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceE-----E
Confidence 46777776655 22221 12222222 33445667777777777777777654222111000000 000111 1
Q ss_pred CCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 450 DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
.+.++..+..+ ...+-+....+......+-...+.+.+.+-+. +.+.+...++.+.||+..
T Consensus 309 y~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~-q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 309 YGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDT-QIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred ecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEe-eEEEEeecCCCEEEEEec
Confidence 23344443333 33344443332222222222222333333344 467888889999999753
No 426
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=1.7 Score=41.24 Aligned_cols=127 Identities=6% Similarity=0.016 Sum_probs=80.5
Q ss_pred CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE----EEeCCCCCceEEEEEe
Q 042434 243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK----HTFGDHGFIVSSCAWF 318 (517)
Q Consensus 243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~i~~~ 318 (517)
.|.+.=|-+...+.-.++..-....++|.++.||+|++.||+--.+.+|.+++....+.. .+.+.....|....|+
T Consensus 42 SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~ 121 (657)
T KOG2377|consen 42 SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT 121 (657)
T ss_pred cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe
Confidence 344555655432222222333345679999999999999999999999999987433322 1223345668899998
Q ss_pred CCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434 319 PDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL 372 (517)
Q Consensus 319 ~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 372 (517)
.+ .-++..+..| +.++..+...+.++....+. -.|.-..|.++.+.++.++
T Consensus 122 ~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~-~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 122 SS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHN-LNVNWYMYCPETAVILLST 172 (657)
T ss_pred cC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcc-cCccEEEEccccceEeeec
Confidence 66 5566655555 23666665555555555444 3677788888887655443
No 427
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.80 E-value=1.2 Score=39.18 Aligned_cols=241 Identities=12% Similarity=0.078 Sum_probs=149.5
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 300 (517)
..+.-..++-.|||..-.++...|.|--.|..+++. ...-.+....-..+..-|||..-++-+.. -|.-.|-++.+
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev---~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e 135 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV---ETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE 135 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCce---EEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc
Confidence 345566778888998888887777777777765532 22223344555677778888766654333 45555555544
Q ss_pred EEE-Ee--CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcE
Q 042434 301 CKH-TF--GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDI 377 (517)
Q Consensus 301 ~~~-~~--~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 377 (517)
..+ .+ +..........|.+.|++-+++.. |. .=..|.....+..+..........++..|+|..-++.-.+..|
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~--yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnai 212 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GA--YGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAI 212 (353)
T ss_pred eEEeecccccCCCcccceeeCCCccEEEeecc-cc--ceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccce
Confidence 321 11 123556677889999988888763 32 2245666777777777776678899999999998888888888
Q ss_pred EEEECCCceEEeecc----CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcE
Q 042434 378 RILNLGTYAERVISE----EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453 (517)
Q Consensus 378 ~i~d~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 453 (517)
-..|..+.....+.. ......+-.+|.|+.-++....+.+..||.....=....+.+.....+.+.. ...++.
T Consensus 213 aridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rV---D~~grV 289 (353)
T COG4257 213 ARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRV---DRHGRV 289 (353)
T ss_pred EEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeee---ccCCcE
Confidence 888887765222221 2234556667788888887778888888876542222333343333333332 333444
Q ss_pred EEEecCCCcEEEEecCCC
Q 042434 454 IASGSENSQIYIWNRRNS 471 (517)
Q Consensus 454 l~~~~~dg~i~iwd~~~~ 471 (517)
-.+--.-|.|.-+|.++.
T Consensus 290 W~sea~agai~rfdpeta 307 (353)
T COG4257 290 WLSEADAGAIGRFDPETA 307 (353)
T ss_pred EeeccccCceeecCcccc
Confidence 333333455666665543
No 428
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=0.17 Score=52.95 Aligned_cols=147 Identities=12% Similarity=-0.033 Sum_probs=91.5
Q ss_pred CcEEEEEECCCCCEEEEe--eCCCcEEEEEecCCCee--------eEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeE
Q 042434 223 NEVWFVQFSNNGEYLASS--SSDCSAIIWKVLEDSKL--------TLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVL 291 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~--~~dg~i~iw~~~~~~~~--------~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i 291 (517)
-+|..+..++|+...++. +.+-.|..||+.+-... ....+......-..++.|.|.- ...+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 466667777787655543 33446888888532111 0111122223456778898853 335666788888
Q ss_pred EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC---cCCCceEEEEEccCCCEE
Q 042434 292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG---TRIPKVLDLAVTPDGENL 368 (517)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l 368 (517)
++..+.-......--......++++|+|.|+.++.|-..|+ +..|.........+.. .....|.+++|.....++
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt--~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGT--EVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCe--EEEeecccceeecccCCCcCCCcceeEEEEecceeEE
Confidence 88876433222221245677899999999999999999999 7767666543333322 223478999998877766
Q ss_pred EEE
Q 042434 369 ISV 371 (517)
Q Consensus 369 ~~~ 371 (517)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 543
No 429
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.64 E-value=0.002 Score=60.37 Aligned_cols=145 Identities=14% Similarity=0.168 Sum_probs=105.4
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEE-EeCCCeEEEEEcCCCCccceEEeC
Q 042434 356 VLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIV-NLNSQEIHMWDVAGKWEKPFKYTG 434 (517)
Q Consensus 356 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~ 434 (517)
.....|-+.+..++.++.+..+..||-................++|..++..+++ +-..+.+.+||+.+.........+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 3445677777778888888899999876655444455556677888887776554 456789999999765333333333
Q ss_pred cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcE
Q 042434 435 HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTI 506 (517)
Q Consensus 435 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v 506 (517)
... -....|++.+..++.|...|.+.|++..+.+.+...-.|...+++++|.+.+ +.+.++.|..+
T Consensus 117 ~~s----~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd--~vil~dcd~~L 182 (615)
T KOG2247|consen 117 TSS----KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED--YVILCDCDNTL 182 (615)
T ss_pred cch----HHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc--eeeecCcHHHH
Confidence 222 2345678889999999999999999988887777666699999999999987 56667666543
No 430
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.57 E-value=1.1 Score=42.85 Aligned_cols=142 Identities=16% Similarity=0.102 Sum_probs=82.3
Q ss_pred CCEEEEEECCCCCeEEEEe-----------CCC-eEEEEECCC--Cc--EEEEeCCCCCceEEEEEeCCCCeEEEeeCCC
Q 042434 268 NPVSFVAWSPDDTKLLTCG-----------NAE-VLKLWDVET--GI--CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT 331 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~ 331 (517)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+...-.....+++.+++ .++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4457789999998777643 223 677776543 33 233443334456889999888 444 44333
Q ss_pred ceeEEEE-eCCC------CeeEe---eeCc---CCCceEEEEEccCCCEEEEEeC-------------------CCcEEE
Q 042434 332 EKGIFMC-DCDG------NEIKA---WRGT---RIPKVLDLAVTPDGENLISVLS-------------------DKDIRI 379 (517)
Q Consensus 332 ~v~i~~~-~~~~------~~~~~---~~~~---~~~~i~~~~~~~~~~~l~~~~~-------------------dg~i~i 379 (517)
|+.+ +..+ ..... +... .......+.|.|||.+.++.+. .|.|..
T Consensus 92 ---i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 92 ---ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred ---EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 6655 4332 11111 1111 1224778999999986665442 145666
Q ss_pred EECCCceEEeec-cCCCeeEEEEcCCCCEEEEEeCC
Q 042434 380 LNLGTYAERVIS-EEHPITSLSVSVDCKNFIVNLNS 414 (517)
Q Consensus 380 ~d~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d 414 (517)
+|..+....... .......++|+++|+.+++-..+
T Consensus 169 ~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 169 YNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 777665533333 23346789999999887765433
No 431
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.50 E-value=0.45 Score=47.99 Aligned_cols=112 Identities=18% Similarity=0.334 Sum_probs=73.1
Q ss_pred CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEEC--CCCCeEEEEeCCCeEEEEECC---
Q 042434 223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWS--PDDTKLLTCGNAEVLKLWDVE--- 297 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~~~l~s~~~dg~i~iwd~~--- 297 (517)
..+.-+.-|.-++.-++-+....+.|||...+. .+....+ ...+.|.++.|. |+++.+++.|..+.|.++.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 344455555555544444445579999997543 4444444 457889999995 688999999999999998431
Q ss_pred --C----CcEEEEe--CCC-CCceEEEEEeCCCCeEEEeeCCCceeEEEEeC
Q 042434 298 --T----GICKHTF--GDH-GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC 340 (517)
Q Consensus 298 --~----~~~~~~~--~~~-~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~ 340 (517)
+ -..++.+ ..+ ..+|.+..|.++|..++.++.. +++++.
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNq----lfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQ----LFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCE----EEEECC
Confidence 1 1223322 234 3678999999999777665543 666654
No 432
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.46 E-value=4.1 Score=42.87 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.1
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEeC
Q 042434 279 DTKLLTCGNAEVLKLWDVETGICKHTFG 306 (517)
Q Consensus 279 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 306 (517)
+..++.++.|+.+.-.|.++|+....+.
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg 287 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFG 287 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEec
Confidence 4578888999999999999999887763
No 433
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=0.32 Score=51.13 Aligned_cols=116 Identities=15% Similarity=0.072 Sum_probs=76.0
Q ss_pred CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe------ee-----CcCCCceEEEEEccCCC-EEEEEeCCCc
Q 042434 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA------WR-----GTRIPKVLDLAVTPDGE-NLISVLSDKD 376 (517)
Q Consensus 309 ~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~------~~-----~~~~~~i~~~~~~~~~~-~l~~~~~dg~ 376 (517)
..++..+...+|+...++....+...|+.+|...-.... +. ........++.|+|.-. ..++...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 345566666777766555443333348888876321111 11 11123456778888543 4566778888
Q ss_pred EEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434 377 IRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG 424 (517)
Q Consensus 377 i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 424 (517)
|++..+.... ..........++++|+|.|+.+++|-..|++.-|....
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 8888776544 33345566789999999999999999999999887643
No 434
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.20 E-value=2.3 Score=44.31 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=54.1
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC----------CCeeeEEEEe--------ccCCCCEEEEEECCC---C
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE----------DSKLTLKHTL--------RSHQNPVSFVAWSPD---D 279 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~----------~~~~~~~~~~--------~~h~~~v~~l~~s~~---~ 279 (517)
-.-.|..+.+||+|++||..|..|.+ |-.+.. +......+++ ..+...|..+.|+|. +
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 34578999999999999998886644 433321 1111111121 234567999999996 5
Q ss_pred CeEEEEeCCCeEEEEECCCC
Q 042434 280 TKLLTCGNAEVLKLWDVETG 299 (517)
Q Consensus 280 ~~l~s~~~dg~i~iwd~~~~ 299 (517)
..|++-..|+++++||+...
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CeEEEEecCCEEEEEecCCC
Confidence 88999999999999999654
No 435
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.19 E-value=0.22 Score=47.46 Aligned_cols=137 Identities=12% Similarity=0.138 Sum_probs=80.5
Q ss_pred cCCCEEE-EEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCC-------EEEEEeCCCeEEEEEcCCCCccceEEe
Q 042434 363 PDGENLI-SVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCK-------NFIVNLNSQEIHMWDVAGKWEKPFKYT 433 (517)
Q Consensus 363 ~~~~~l~-~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~-------~l~~~~~d~~i~~~d~~~~~~~~~~~~ 433 (517)
.+...++ .|.....++-.|+..++ .........+ -+.+.|..+ .-++|-.+..|.-.|.+-....+....
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 3444433 34445567777777766 2222233333 667777532 245666677777777654432222211
Q ss_pred Cccc-CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEee
Q 042434 434 GHSQ-NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 434 ~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~ 501 (517)
...- ......+.. .....|+|+|+..|.|++||.-.-+....+++-...|..+..+.+|..+|+||-
T Consensus 556 sKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 556 SKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred ehhccccccccccc-cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence 1110 111111221 334569999999999999997655555567777889999999999976666663
No 436
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.10 E-value=1.1 Score=43.08 Aligned_cols=141 Identities=19% Similarity=0.223 Sum_probs=90.9
Q ss_pred CCCCeEEE-EeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC-------eEEEeeCCCceeEEEEeCC--CCeeE
Q 042434 277 PDDTKLLT-CGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK-------RLVCGSSDTEKGIFMCDCD--GNEIK 346 (517)
Q Consensus 277 ~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-------~l~~~~~d~~v~i~~~~~~--~~~~~ 346 (517)
.|.++|+. |+....+.-.|++.|+.+..+..|... -+.|.|+.+ .-++|-.+.. |+..|++ ++.+.
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~s--vFrIDPR~~gNKi~ 552 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYS--VFRIDPRARGNKIK 552 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccc--eEEecccccCCcee
Confidence 34555544 444557888899999999988777654 466777432 2334444545 8888876 44443
Q ss_pred eeeCcC---CCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 042434 347 AWRGTR---IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWD 421 (517)
Q Consensus 347 ~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d 421 (517)
...... .....+..-. ...++++++..|.|++||--... ......+..|..+..+.+|+++++.+. ..+.+.|
T Consensus 553 v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d 630 (776)
T COG5167 553 VVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTD 630 (776)
T ss_pred eeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEe
Confidence 332221 1112222222 34589999999999999965443 455566778999999999999887764 4566777
Q ss_pred cC
Q 042434 422 VA 423 (517)
Q Consensus 422 ~~ 423 (517)
++
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 64
No 437
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.01 E-value=3.2 Score=39.07 Aligned_cols=235 Identities=17% Similarity=0.167 Sum_probs=117.1
Q ss_pred CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE---EEEe----CCCCCceEEEEEeCC----CCeEEEeeCC------C
Q 042434 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC---KHTF----GDHGFIVSSCAWFPD----SKRLVCGSSD------T 331 (517)
Q Consensus 269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~----~~~~~~v~~i~~~~~----~~~l~~~~~d------~ 331 (517)
..+.|+|.|||+.+++ ...|.|++++ .++.. +... .........++++|+ +...++.+.. .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 6699999999 45543 2222 233567899999994 3333333321 1
Q ss_pred ceeEEEEeCCCC--e------e-EeeeC--cCCCceEEEEEccCCCEEEEEeCC-------------CcEEEEECCCce-
Q 042434 332 EKGIFMCDCDGN--E------I-KAWRG--TRIPKVLDLAVTPDGENLISVLSD-------------KDIRILNLGTYA- 386 (517)
Q Consensus 332 ~v~i~~~~~~~~--~------~-~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~- 386 (517)
..+|..|..... . + ..... ........+.|.|||.+.++.+.. |.|.-.+.....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 223554544322 1 1 11111 122356779999999766665543 234444433210
Q ss_pred -------------EEeeccCCCeeEEEEcCC-CCEEEEEeC-CC--eEEEEEcCC--CC---------------------
Q 042434 387 -------------ERVISEEHPITSLSVSVD-CKNFIVNLN-SQ--EIHMWDVAG--KW--------------------- 426 (517)
Q Consensus 387 -------------~~~~~~~~~i~~~~~s~~-~~~l~~~~~-d~--~i~~~d~~~--~~--------------------- 426 (517)
......-.....++|+|. |..+++-.. ++ .|.+..--. +|
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 111111223567899998 555443222 22 232221100 00
Q ss_pred ---ccceEEeCcccCceEEEee---cC-CCCCcEEEEecCCCcEEEEecCCCceeE---E-ecCCCCCeeEEEecCCCCc
Q 042434 427 ---EKPFKYTGHSQNKYVIRSC---FG-GLDGTFIASGSENSQIYIWNRRNSKPIE---I-LSGHSMTVNCVSWNPKRPK 495 (517)
Q Consensus 427 ---~~~~~~~~~~~~~~~i~~~---~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~-~~~h~~~v~~v~~~~~~~~ 495 (517)
.+...+..|... ..+... .| .-.|.++++.-..+.|....+..+..+. . +......+.++++.||| .
T Consensus 241 ~~~~P~~~~~~~~ap-~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG-~ 318 (331)
T PF07995_consen 241 GFVPPVFAYPPHSAP-TGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG-A 318 (331)
T ss_dssp TS---SEEETTT--E-EEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS-E
T ss_pred CcCccceeecCcccc-CceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC-e
Confidence 011112222111 111110 11 1256777777767788888877553222 1 23344589999999999 6
Q ss_pred EEEEeeCCCcEE
Q 042434 496 MLASASDDHTIR 507 (517)
Q Consensus 496 ~l~s~~~dg~v~ 507 (517)
++++.+.+|.|.
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 888877888774
No 438
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.92 E-value=1.8 Score=44.31 Aligned_cols=147 Identities=10% Similarity=0.091 Sum_probs=91.6
Q ss_pred CCEEEEeeCCCcEEEEEecCCCeeeE---EEEe----------------ccCCCCEEEEEECC--CCCeEEEEeCCCeEE
Q 042434 234 GEYLASSSSDCSAIIWKVLEDSKLTL---KHTL----------------RSHQNPVSFVAWSP--DDTKLLTCGNAEVLK 292 (517)
Q Consensus 234 ~~~l~t~~~dg~i~iw~~~~~~~~~~---~~~~----------------~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~ 292 (517)
.++++++. .+.|.||+...-..... ...+ ......|+.|.... +...|+.|..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56777765 57899998753222110 0000 00122355554432 457889999999999
Q ss_pred EEECCC-------C----c---------EEEEeCCCCCceEEEEEe--CCCCeEEEeeCCCceeEEEEeCCCCee-Eeee
Q 042434 293 LWDVET-------G----I---------CKHTFGDHGFIVSSCAWF--PDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWR 349 (517)
Q Consensus 293 iwd~~~-------~----~---------~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~ 349 (517)
+|.+++ . + +-..+ .....+++++++ ...++||+++....|.|+.+....... ..-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 996621 0 0 01111 235678999998 888899999999998898888742221 1111
Q ss_pred CcCCCceEEEEEccCC---C---EEEEEeCCCcEEEEEC
Q 042434 350 GTRIPKVLDLAVTPDG---E---NLISVLSDKDIRILNL 382 (517)
Q Consensus 350 ~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~i~d~ 382 (517)
..+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1233468888887643 2 7788899999998887
No 439
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=2.5 Score=42.79 Aligned_cols=196 Identities=11% Similarity=0.177 Sum_probs=96.7
Q ss_pred CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC---cCCCceEEEEEccCC
Q 042434 289 EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG---TRIPKVLDLAVTPDG 365 (517)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~ 365 (517)
-.|+|+++ +|..+....-....+..+.|+.+ ..|++...+|+ +++++..+..+..... .....|..+.+..+|
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~--v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDD-EELICVQKDGT--VHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCC-ceEEEEeccce--EEEeecchhhhcccccccccccCceeEEEEecCc
Confidence 35888886 56666655444458889999965 46677788999 6666666554443211 112245555555555
Q ss_pred CEEEEEeCCCcEEEE-ECCCceEEee----ccCCCeeEEEEcCCCCE--EEEEeC-CCeEEEEEcCCCCccceEEeCccc
Q 042434 366 ENLISVLSDKDIRIL-NLGTYAERVI----SEEHPITSLSVSVDCKN--FIVNLN-SQEIHMWDVAGKWEKPFKYTGHSQ 437 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~-d~~~~~~~~~----~~~~~i~~~~~s~~~~~--l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~ 437 (517)
+++-..+|.+.+. +......... ....+-.+-+..+++.. ++..-. .-...++...........+ ..
T Consensus 140 --Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~---~~ 214 (829)
T KOG2280|consen 140 --VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL---SW 214 (829)
T ss_pred --eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc---CC
Confidence 3333445554443 3333221111 11111122222222211 111100 0000111111110111111 11
Q ss_pred CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCC-CCCeeEEEecCCC
Q 042434 438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH-SMTVNCVSWNPKR 493 (517)
Q Consensus 438 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~~ 493 (517)
....+.-+..||+.++|+--..+|.|.+-+....+....+... ..+-..++|.-+.
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 1122444455899999999999999999988877766665521 1222366666443
No 440
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.87 E-value=2.8 Score=37.77 Aligned_cols=218 Identities=11% Similarity=0.108 Sum_probs=122.7
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEECC------CC-cEEEEeCC-----CCCceEEEEEeCCCC------------eEE
Q 042434 270 VSFVAWSPDDTKLLTCGNAEVLKLWDVE------TG-ICKHTFGD-----HGFIVSSCAWFPDSK------------RLV 325 (517)
Q Consensus 270 v~~l~~s~~~~~l~s~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~i~~~~~~~------------~l~ 325 (517)
-+.|+++|.+.+-++....+...+||.. .. ..+.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4779999999888888888899999986 12 22333321 234677888875433 367
Q ss_pred EeeCCCceeEEEEeCCCC------eeEeeeCcCCCc-eEEEEEcc--CCCEEEEE-eCCCcEEEEECCCceEEee-ccCC
Q 042434 326 CGSSDTEKGIFMCDCDGN------EIKAWRGTRIPK-VLDLAVTP--DGENLISV-LSDKDIRILNLGTYAERVI-SEEH 394 (517)
Q Consensus 326 ~~~~d~~v~i~~~~~~~~------~~~~~~~~~~~~-i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~-~~~~ 394 (517)
.++.||+ |--|...-. ..........+. ...+++.. .+.+|+.+ -..++|.+||-.-...... ....
T Consensus 105 f~tEdGT--isaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 105 FVTEDGT--LSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEeCCce--EEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 7788888 666665321 112222221122 23444443 34555444 4678899998643321110 0000
Q ss_pred C-------------------eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe--CcccCceEEE---eecCCCC
Q 042434 395 P-------------------ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT--GHSQNKYVIR---SCFGGLD 450 (517)
Q Consensus 395 ~-------------------i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~~~~i~---~~~~s~~ 450 (517)
+ |+-..-.++...=+.+..-|.|-+||+... .++++. +.-...+.+. ..+....
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCCcccCCceeeeChhhhCCCC
Confidence 0 111111222222233344568999998764 444432 2222222222 2233556
Q ss_pred CcEEEEecCCCcEEEEecCCCceeEEecCCC------CCeeEEEecC
Q 042434 451 GTFIASGSENSQIYIWNRRNSKPIEILSGHS------MTVNCVSWNP 491 (517)
Q Consensus 451 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~v~~~~ 491 (517)
|.+|+---.||+|..||..+|+.+..+.... ...+.++|..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 7788877779999999999999888887543 3467788865
No 441
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=94.84 E-value=5.2 Score=40.65 Aligned_cols=233 Identities=13% Similarity=0.142 Sum_probs=115.5
Q ss_pred EEECCCCCeEEEEeCCCeEEEEEC-CCCcEEEEeC-CCCCceEEEEEeCC---CCeEEEeeCCCc-eeEEEEeCC-----
Q 042434 273 VAWSPDDTKLLTCGNAEVLKLWDV-ETGICKHTFG-DHGFIVSSCAWFPD---SKRLVCGSSDTE-KGIFMCDCD----- 341 (517)
Q Consensus 273 l~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~-~~~~~v~~i~~~~~---~~~l~~~~~d~~-v~i~~~~~~----- 341 (517)
..++|+.+.+-.|=....|.-|=+ .|.+.+..+. .....|.|+..... .+..++|-.++. .++......
T Consensus 33 ~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~ 112 (670)
T PF10395_consen 33 DDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTE 112 (670)
T ss_pred cccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccc
Confidence 356777776655544444444433 2455555554 34566777665432 234445534433 233333332
Q ss_pred -----CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEe---e--ccCCC-eeEEEEcC------C
Q 042434 342 -----GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERV---I--SEEHP-ITSLSVSV------D 404 (517)
Q Consensus 342 -----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~--~~~~~-i~~~~~s~------~ 404 (517)
+.....+...-...+..+.+.++++.+++...+|.|.+||........ . .+... +.+ .|-+ .
T Consensus 113 ~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~ 191 (670)
T PF10395_consen 113 DGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENG 191 (670)
T ss_pred ccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccC
Confidence 111122222234579999999999999999999999999993322111 1 11111 111 2222 2
Q ss_pred CCEEEEEeC-C---CeEEEEEcCCCCccceEEeCcccCceEE-EeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC
Q 042434 405 CKNFIVNLN-S---QEIHMWDVAGKWEKPFKYTGHSQNKYVI-RSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG 479 (517)
Q Consensus 405 ~~~l~~~~~-d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 479 (517)
..++++.+. + -..+++.+.........+.......... .+.+.-.+|.+..- .+++|.+|++.+.+...++.-
T Consensus 192 ~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l 269 (670)
T PF10395_consen 192 KDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISL 269 (670)
T ss_pred CceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEe
Confidence 344444443 2 2567777732223333332111111001 11111124544333 677899999988876666542
Q ss_pred C-----C-CCeeEE-EecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 480 H-----S-MTVNCV-SWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 480 h-----~-~~v~~v-~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
. . ..+.++ +.+|+ ++|.+ .++.|++.|+.
T Consensus 270 ~~ii~~~~~~~vSl~~~s~n--RvLLs--~~nkIyLld~~ 305 (670)
T PF10395_consen 270 PSIIDKESDDLVSLKPPSPN--RVLLS--VNNKIYLLDLK 305 (670)
T ss_pred chhhccccccceEeecCCCC--eEEEE--cCCEEEEEeeh
Confidence 2 1 123333 33443 34544 35678888764
No 442
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.58 E-value=4.7 Score=38.94 Aligned_cols=143 Identities=8% Similarity=0.131 Sum_probs=85.4
Q ss_pred CCCeEEEEeCCCeEEEEECCCCc-----EEEEeCCCCCceEEEEEeC-----CCCeEEEeeCCCceeEEEEeCC-CC---
Q 042434 278 DDTKLLTCGNAEVLKLWDVETGI-----CKHTFGDHGFIVSSCAWFP-----DSKRLVCGSSDTEKGIFMCDCD-GN--- 343 (517)
Q Consensus 278 ~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~i~~~~-----~~~~l~~~~~d~~v~i~~~~~~-~~--- 343 (517)
+...|++||..|.++||+...+. .+-. ..-+.+|..+..-+ +...|++ =.-..+.||..... +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34689999999999999985443 1111 13356777776542 2223433 33333334433221 11
Q ss_pred ----eeEeeeCcCC-CceEEEEEcc----C-CCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEe
Q 042434 344 ----EIKAWRGTRI-PKVLDLAVTP----D-GENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNL 412 (517)
Q Consensus 344 ----~~~~~~~~~~-~~i~~~~~~~----~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~ 412 (517)
.+.....++. .....+++-| . ...+.+-+.||.+.+|+-+... ......---...+.+.+....+++++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEec
Confidence 1222222221 1334444443 2 3578888999999999988766 33333333445678888888999999
Q ss_pred CCCeEEEEEc
Q 042434 413 NSQEIHMWDV 422 (517)
Q Consensus 413 ~d~~i~~~d~ 422 (517)
.+..+..|..
T Consensus 194 ss~~l~~Yky 203 (418)
T PF14727_consen 194 SSWTLECYKY 203 (418)
T ss_pred CceeEEEecH
Confidence 9988888875
No 443
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.53 E-value=2.2 Score=43.27 Aligned_cols=113 Identities=13% Similarity=0.220 Sum_probs=70.1
Q ss_pred CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC-CCCCceEEEEEe--CCCCeEEEeeCCCceeEEE---EeC-
Q 042434 268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIVSSCAWF--PDSKRLVCGSSDTEKGIFM---CDC- 340 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~--~~~~~l~~~~~d~~v~i~~---~~~- 340 (517)
....-+.-+.-++..++-+....+.|||...+.....-. ...+.|.++.|. |+++.+++.+..+.|.++- +|-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344555555545444444445589999998887544322 457889999996 5888999999988844431 111
Q ss_pred -CC---CeeEe--eeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEEC
Q 042434 341 -DG---NEIKA--WRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL 382 (517)
Q Consensus 341 -~~---~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 382 (517)
.+ ..++. +......+|.+..|.++|..++.+ ++.+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 11 11222 222333478899999999766544 456777764
No 444
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.46 E-value=0.073 Score=54.12 Aligned_cols=167 Identities=12% Similarity=0.155 Sum_probs=93.9
Q ss_pred EeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCC-Ceee---EEEEeccCCCCEEEEEECC---CCCeEEEEeCC
Q 042434 217 ILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLED-SKLT---LKHTLRSHQNPVSFVAWSP---DDTKLLTCGNA 288 (517)
Q Consensus 217 ~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~-~~~~---~~~~~~~h~~~v~~l~~s~---~~~~l~s~~~d 288 (517)
.++|..+.|-.+.|-. +-..++ -.-|...||+++-- +++. .++....-...+.-+.|.| +..++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 4567778888888844 222222 23467889987421 1111 1222233345556667765 55667777778
Q ss_pred CeEEEEECCCCcEEEEeCCCCCceEEEE-----------EeCCCCeEEEeeCCCceeEEEEeCCC----CeeEeeeCcCC
Q 042434 289 EVLKLWDVETGICKHTFGDHGFIVSSCA-----------WFPDSKRLVCGSSDTEKGIFMCDCDG----NEIKAWRGTRI 353 (517)
Q Consensus 289 g~i~iwd~~~~~~~~~~~~~~~~v~~i~-----------~~~~~~~l~~~~~d~~v~i~~~~~~~----~~~~~~~~~~~ 353 (517)
+.+++.++.+... ..+.+|...++.++ .+|||+.|+.++.||.++.|..-+.+ .++..|..+..
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence 8888877654332 33445655544433 58999999999999997665544444 33455555553
Q ss_pred CceEEEEEccCCC---------EEEEEe-CCCcEEEEECCCce
Q 042434 354 PKVLDLAVTPDGE---------NLISVL-SDKDIRILNLGTYA 386 (517)
Q Consensus 354 ~~i~~~~~~~~~~---------~l~~~~-~dg~i~i~d~~~~~ 386 (517)
.+-.|.-++.... ++++++ .+..+++|.....+
T Consensus 284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~ 326 (1283)
T KOG1916|consen 284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ 326 (1283)
T ss_pred CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchh
Confidence 3333333333211 233333 34467777765544
No 445
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.33 E-value=0.94 Score=42.82 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=68.6
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC
Q 042434 391 SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN 470 (517)
Q Consensus 391 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 470 (517)
...++|.++.|++|.+.+++--.+..|.+++.............+......|...+|+.+ .-+|..+..| +-+|-+..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence 345699999999999999999999999999985442332222233333333444444443 4455555444 55555432
Q ss_pred -CceeEEecCCCCCeeEEEecCCCCcEEEEee
Q 042434 471 -SKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 471 -~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~ 501 (517)
.+.++..+.|+..|+-..|+++..-.|.+.+
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 2345555678888999999998743333333
No 446
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.23 E-value=4.9 Score=37.73 Aligned_cols=106 Identities=11% Similarity=0.102 Sum_probs=52.1
Q ss_pred CCCeEEEeeCCCc---eeEEEEeCCCCee----EeeeCcCCCceEEEEEccCCCEEEEEeC-----CCcEEEEECCCce-
Q 042434 320 DSKRLVCGSSDTE---KGIFMCDCDGNEI----KAWRGTRIPKVLDLAVTPDGENLISVLS-----DKDIRILNLGTYA- 386 (517)
Q Consensus 320 ~~~~l~~~~~d~~---v~i~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~- 386 (517)
++..++.|+.++. -.++.+|.....- ..............+..-+++..+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 5566677776432 2367777654432 1111111111111122235566666664 2368889988766
Q ss_pred EEee--ccCCCeeEEEEcCCCCEEEEEeCCC----eEEEEEcCCC
Q 042434 387 ERVI--SEEHPITSLSVSVDCKNFIVNLNSQ----EIHMWDVAGK 425 (517)
Q Consensus 387 ~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~----~i~~~d~~~~ 425 (517)
.... .........+...+++.++.|+.++ .+..||..+.
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2221 1112222233344667777776653 3567887653
No 447
>PLN02153 epithiospecifier protein
Probab=94.08 E-value=5.5 Score=37.75 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=72.1
Q ss_pred CCCeEEEeeCCCc---eeEEEEeCCCCeeEeeeCc-----CCCceEEEEEccCCCEEEEEeCC-----------CcEEEE
Q 042434 320 DSKRLVCGSSDTE---KGIFMCDCDGNEIKAWRGT-----RIPKVLDLAVTPDGENLISVLSD-----------KDIRIL 380 (517)
Q Consensus 320 ~~~~l~~~~~d~~---v~i~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~ 380 (517)
+++.++.|+.++. -.++.+|.....-...... ........+..-+++..+.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 5667777776432 1378888876544332211 11112222223355666666643 247789
Q ss_pred ECCCceEEeec-cC----CC-eeEEEEcCCCCEEEEEeC-------------CCeEEEEEcCCC-CccceEEeCcccCce
Q 042434 381 NLGTYAERVIS-EE----HP-ITSLSVSVDCKNFIVNLN-------------SQEIHMWDVAGK-WEKPFKYTGHSQNKY 440 (517)
Q Consensus 381 d~~~~~~~~~~-~~----~~-i~~~~~s~~~~~l~~~~~-------------d~~i~~~d~~~~-~~~~~~~~~~~~~~~ 440 (517)
|..+..-.... .. .. -.+++ .-+++.++.++. ...+.+||+.+. |..+...........
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS 243 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence 98876622111 11 11 11222 235555555542 245888887653 222221100111111
Q ss_pred EEEeecCCCCCcEEEEecCC--------------CcEEEEecCCCc
Q 042434 441 VIRSCFGGLDGTFIASGSEN--------------SQIYIWNRRNSK 472 (517)
Q Consensus 441 ~i~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~ 472 (517)
...++ ..++++++.|+.. ..++.+|..+.+
T Consensus 244 ~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 244 VFAHA--VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred eeeeE--EECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 11122 2356777777752 257888887654
No 448
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=4.4 Score=36.31 Aligned_cols=224 Identities=16% Similarity=0.091 Sum_probs=119.0
Q ss_pred CCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC--CCC
Q 042434 232 NNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG--DHG 309 (517)
Q Consensus 232 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~ 309 (517)
-.|++...+.-|.-..+.|+.+.........+......-..++.| |++-..+..|+-+.+-|+.+.....-+. ...
T Consensus 136 vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g 213 (370)
T COG5276 136 VSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTG 213 (370)
T ss_pred ecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecC
Confidence 356777777755567788998776666666666556666777776 7777888899999999997654222111 123
Q ss_pred CceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC-cCCCceEEE-EEccCCCEEEEEeCCCcEEEEECCCceE
Q 042434 310 FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG-TRIPKVLDL-AVTPDGENLISVLSDKDIRILNLGTYAE 387 (517)
Q Consensus 310 ~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~~i~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 387 (517)
..+.++..+++..+++..... +.+.|..+..-....+ .....+.++ .+.-.+++......+.-+-+.|......
T Consensus 214 ~g~~sv~vsdnr~y~vvy~eg----vlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~s 289 (370)
T COG5276 214 PGTYSVSVSDNRAYLVVYDEG----VLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPS 289 (370)
T ss_pred CceEEEEecCCeeEEEEcccc----eEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCC
Confidence 367777777665555554333 6777766543222111 111122222 2333466666777777777777765441
Q ss_pred Eeec-----cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCc
Q 042434 388 RVIS-----EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ 462 (517)
Q Consensus 388 ~~~~-----~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 462 (517)
.+.. .......+.. .+.++..+..+ ...+.|.... +..-.. .........+..+-+.+++.+...++.
T Consensus 290 pfl~ss~~t~g~~a~gi~a--y~~y~yiadkn-~g~vV~~s~~-s~m~~~---~g~~ti~~s~~v~~~~q~~y~~d~~~g 362 (370)
T COG5276 290 PFLSSSLDTAGYQAAGIRA--YGNYNYIADKN-TGAVVDASPP-SMMDKR---PGRPTIGQSCDVSVDTQIIYSTDYNGG 362 (370)
T ss_pred CchhccccCCCccccceEE--ecCeeEeccCC-ceEEEeCCCh-hhcccc---cCcceEeeecceEEEeeEEEEeecCCC
Confidence 1111 1111222222 23333333333 3334443221 111011 111112333333445667778888888
Q ss_pred EEEEec
Q 042434 463 IYIWNR 468 (517)
Q Consensus 463 i~iwd~ 468 (517)
+.+|+.
T Consensus 363 l~i~~~ 368 (370)
T COG5276 363 LSIIEY 368 (370)
T ss_pred EEEEEe
Confidence 888875
No 449
>PLN02193 nitrile-specifier protein
Probab=93.99 E-value=7.3 Score=38.83 Aligned_cols=192 Identities=15% Similarity=0.125 Sum_probs=93.4
Q ss_pred CCCeEEEEeCC-------CeEEEEECCCCcEEEEeCCC---C--CceEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCC
Q 042434 278 DDTKLLTCGNA-------EVLKLWDVETGICKHTFGDH---G--FIVSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDG 342 (517)
Q Consensus 278 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~---~--~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~ 342 (517)
++..++.|+.+ ..+.+||+.+.+-.. .... . .........-++..++.|+.++. -.++.+|+..
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence 35566666643 247788887765432 2111 1 11111122235667777776532 2388889887
Q ss_pred CeeEeeeCc---CCCceEEEEEccCCCEEEEEeCCC-----cEEEEECCCceEEeeccC-----CC-eeEEEEcCCCCEE
Q 042434 343 NEIKAWRGT---RIPKVLDLAVTPDGENLISVLSDK-----DIRILNLGTYAERVISEE-----HP-ITSLSVSVDCKNF 408 (517)
Q Consensus 343 ~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~-----~~-i~~~~~s~~~~~l 408 (517)
..-...... ........+..-+++..+.|+.++ .+..||+.+.+-...... .. -..++ .-+++.+
T Consensus 254 ~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~-~~~gkiy 332 (470)
T PLN02193 254 NEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLE-VVQGKVW 332 (470)
T ss_pred CEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEE-EECCcEE
Confidence 554433221 111111122223556666666543 467888877662211110 01 11122 2356677
Q ss_pred EEEeCC----CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCC--------------CcEEEEecC
Q 042434 409 IVNLNS----QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN--------------SQIYIWNRR 469 (517)
Q Consensus 409 ~~~~~d----~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~ 469 (517)
+.++.+ ..+.+||+.+. |..+..............++ ..++++++.|+.+ ..+.+||..
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA--AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE--EECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 776654 46889998654 22221110011111111122 2367778888753 248889988
Q ss_pred CCce
Q 042434 470 NSKP 473 (517)
Q Consensus 470 ~~~~ 473 (517)
+.+-
T Consensus 411 t~~W 414 (470)
T PLN02193 411 TLQW 414 (470)
T ss_pred cCEE
Confidence 7653
No 450
>PRK13684 Ycf48-like protein; Provisional
Probab=93.95 E-value=5.7 Score=37.46 Aligned_cols=105 Identities=11% Similarity=0.131 Sum_probs=61.4
Q ss_pred CCceEEEEEeCCCCeEEEeeCCCceeEEEE-eCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE
Q 042434 309 GFIVSSCAWFPDSKRLVCGSSDTEKGIFMC-DCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE 387 (517)
Q Consensus 309 ~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 387 (517)
...+.++.+.|++.+++++ ..|. ++.- +..+..-..........+.++.+.++++.++++ ..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~--i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGN--FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCce--EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 5578889999987665554 4454 4432 333333444444444578999999998876665 557665323333331
Q ss_pred ---Eeec---cCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434 388 ---RVIS---EEHPITSLSVSVDCKNFIVNLNSQEIH 418 (517)
Q Consensus 388 ---~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~ 418 (517)
.... ....+..+.+.+++..+++ +.+|.+.
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~ 283 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL 283 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE
Confidence 1111 2234678889987765554 4566544
No 451
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.94 E-value=6.3 Score=37.94 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=27.6
Q ss_pred CCCeEEEeeCCC---------ceeEEEEeCCCCeeEeeeCc-CCCce-EEEEEccCCCEEEEEeCC
Q 042434 320 DSKRLVCGSSDT---------EKGIFMCDCDGNEIKAWRGT-RIPKV-LDLAVTPDGENLISVLSD 374 (517)
Q Consensus 320 ~~~~l~~~~~d~---------~v~i~~~~~~~~~~~~~~~~-~~~~i-~~~~~~~~~~~l~~~~~d 374 (517)
++..++.|+... .-.++.||...+.-...... ..... .+.....+++..+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 566777776542 12378888876554443321 11111 112221467777777654
No 452
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.87 E-value=0.37 Score=29.03 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=26.4
Q ss_pred CCEEEEEECCCC---CeEEEEeCCCeEEEEECCCC
Q 042434 268 NPVSFVAWSPDD---TKLLTCGNAEVLKLWDVETG 299 (517)
Q Consensus 268 ~~v~~l~~s~~~---~~l~s~~~dg~i~iwd~~~~ 299 (517)
++|.++.|+|++ .+|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 48888888899999999853
No 453
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=93.82 E-value=4.5 Score=35.80 Aligned_cols=140 Identities=18% Similarity=0.170 Sum_probs=73.8
Q ss_pred EEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC---CcEEEEECCC----ce----EEeeccCCCeeEEEEcCC
Q 042434 336 FMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD---KDIRILNLGT----YA----ERVISEEHPITSLSVSVD 404 (517)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~----~~----~~~~~~~~~i~~~~~s~~ 404 (517)
..||..++..+.........+.+-.+.+||+.+.+|+.. ..+++++... .. .........-.+...-||
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 344544444443333322223333455666666666542 2466666543 11 011334445566777889
Q ss_pred CCEEEEEeCCC-eEEEEEcCCCCccceEE--eC-----cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEE
Q 042434 405 CKNFIVNLNSQ-EIHMWDVAGKWEKPFKY--TG-----HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEI 476 (517)
Q Consensus 405 ~~~l~~~~~d~-~i~~~d~~~~~~~~~~~--~~-----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 476 (517)
|+.+++|+... ...+|.-.........+ .. ....-+. .++.-|+|++++.+..++ .|||..+.+.+..
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP--~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYP--FVHLLPDGNLFIFANRGS--IIYDYKTNTVVRT 204 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCc--eEEEcCCCCEEEEEcCCc--EEEeCCCCeEEee
Confidence 99999988764 34455442211111111 11 1111222 233468999999888754 4678888877777
Q ss_pred ecC
Q 042434 477 LSG 479 (517)
Q Consensus 477 ~~~ 479 (517)
+..
T Consensus 205 lP~ 207 (243)
T PF07250_consen 205 LPD 207 (243)
T ss_pred CCC
Confidence 664
No 454
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.79 E-value=0.69 Score=44.48 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=50.1
Q ss_pred EEeecCCCCCcEEEEecCCCcEEEEe---------cCCCceeEEec-----------CCCCCeeEEEecCCC--CcEEEE
Q 042434 442 IRSCFGGLDGTFIASGSENSQIYIWN---------RRNSKPIEILS-----------GHSMTVNCVSWNPKR--PKMLAS 499 (517)
Q Consensus 442 i~~~~~s~~~~~l~~~~~dg~i~iwd---------~~~~~~~~~~~-----------~h~~~v~~v~~~~~~--~~~l~s 499 (517)
+.-+..++.|..++-.+.+|.+.++= ++.|+.+-... ...-.+..++|+|+. ...|..
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i 185 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL 185 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence 44444588999999999998654432 22343221111 122356788999986 457788
Q ss_pred eeCCCcEEEeCCCCCCC
Q 042434 500 ASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 500 ~~~dg~v~iw~~~~~~~ 516 (517)
-+.|.+||+|+.....+
T Consensus 186 L~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 186 LTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EecCcEEEEEecCCcch
Confidence 88999999999987665
No 455
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.73 E-value=0.025 Score=53.37 Aligned_cols=135 Identities=16% Similarity=0.197 Sum_probs=93.2
Q ss_pred EEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEE-eeCCCceeEEEEeCCCCeeEeee
Q 042434 271 SFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVC-GSSDTEKGIFMCDCDGNEIKAWR 349 (517)
Q Consensus 271 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~ 349 (517)
....|-|.+.-++.++.+..+..||- .|+..-.. ..+.....++|..++..++. +-..+. +++|+..........
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~-n~tg~aldm~wDkegdvlavlAek~~p--iylwd~n~eytqqLE 113 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDK-AGQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGP--IYLWDVNSEYTQQLE 113 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhh-hcceeccc-CCchhHhhhhhccccchhhhhhhcCCC--eeechhhhhhHHHHh
Confidence 44567787777888888889999984 34433333 33455567888887776554 444556 889998765444443
Q ss_pred CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeec-cCCCeeEEEEcCCCCEEE
Q 042434 350 GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVIS-EEHPITSLSVSVDCKNFI 409 (517)
Q Consensus 350 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~-~~~~i~~~~~s~~~~~l~ 409 (517)
......-.-+.|++.+..++.+...|.+.+++..+.+ ....+ +...++++++.+.+..+.
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence 3322222337889999999999999999999988766 44444 777899999999865443
No 456
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=1.9 Score=43.65 Aligned_cols=169 Identities=12% Similarity=0.118 Sum_probs=83.6
Q ss_pred CcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEE-EEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434 211 PTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLK-HTLRSHQNPVSFVAWSPDDTKLLTCGNAE 289 (517)
Q Consensus 211 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 289 (517)
.+..+..+.-..+.+-.+.|+.+..+| ....+|+++||++... ..+.. .-+......|..+.|..+|-.+. ..+|
T Consensus 72 sG~lL~~~~w~~~~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GVavl--t~~g 147 (829)
T KOG2280|consen 72 SGQLLGRILWKHGELIGMGWSDDEELI-CVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGVAVL--TVSG 147 (829)
T ss_pred cccchHHHHhcCCCeeeecccCCceEE-EEeccceEEEeecchh-hhcccccccccccCceeEEEEecCceEEE--ecCC
Confidence 344555444444588899999887644 4578999999998522 11110 00122233455555555553333 3444
Q ss_pred eEEEE-ECCCCcEEEEeCC-C--CCceEEEEEeCCCC---eEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434 290 VLKLW-DVETGICKHTFGD-H--GFIVSSCAWFPDSK---RLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV 361 (517)
Q Consensus 290 ~i~iw-d~~~~~~~~~~~~-~--~~~v~~i~~~~~~~---~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 361 (517)
.+.+- +.+.. ..+++.. . ..+-.|-...+++. .++-.. ..+. .++..+........+...+ +.+..+.+
T Consensus 148 ~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~-~~~q~~~~~~q~~~~~~~~-~~~~ki~V 224 (829)
T KOG2280|consen 148 QVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGL-HICQVEESRVQLHALSWPN-SSVVKISV 224 (829)
T ss_pred cEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhh-cccceecccccccccCCCC-ceEEEEEE
Confidence 44433 32221 2222221 1 11112222222211 111111 1110 0222222222222222222 36888999
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCce
Q 042434 362 TPDGENLISVLSDKDIRILNLGTYA 386 (517)
Q Consensus 362 ~~~~~~l~~~~~dg~i~i~d~~~~~ 386 (517)
||+.++++.-...|.|.+.+.+..+
T Consensus 225 S~n~~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 225 SPNRRFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred cCCcceEEEEecCCcEEEEecchhh
Confidence 9999999999999999988876554
No 457
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=2 Score=41.55 Aligned_cols=95 Identities=20% Similarity=0.134 Sum_probs=58.9
Q ss_pred CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe
Q 042434 268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA 347 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~ 347 (517)
-.|..+..++.|..++-.|.+|.+..+=.+..-.-..++..+..|+|=.+.-+ ..|++.+..
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~-~~~ftss~~----------------- 165 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA-ERFFTSSTS----------------- 165 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc-ceeeccCCc-----------------
Confidence 35777888999999999999986655432222222233344444555444433 233333211
Q ss_pred eeCcCCCceEEEEEccCC---CEEEEEeCCCcEEEEECCCce
Q 042434 348 WRGTRIPKVLDLAVTPDG---ENLISVLSDKDIRILNLGTYA 386 (517)
Q Consensus 348 ~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~ 386 (517)
-.+...+|+|+. ..+..-+.|..|++||+....
T Consensus 166 ------ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 166 ------LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred ------eeeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence 145667888875 578888899999999987765
No 458
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.41 E-value=7.8 Score=37.35 Aligned_cols=149 Identities=10% Similarity=0.053 Sum_probs=81.0
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCc--eEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe
Q 042434 356 VLDLAVTPDGENLISVLSDKDIRILNLGTY--AERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT 433 (517)
Q Consensus 356 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 433 (517)
...+..++++..++++.....++-||-... +.........++.+.+.+++..++++ ..|.+..-+-.........+.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~d~G~~~~~~~f~ 319 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSKGTGLTEEDFDFE 319 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEecCCCCccccccee
Confidence 344566778877777655544455655432 33445556678899999998877766 455544332222101000111
Q ss_pred --CcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec---CCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434 434 --GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS---GHSMTVNCVSWNPKRPKMLASASDDHTIRI 508 (517)
Q Consensus 434 --~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i 508 (517)
........+..+.+.+++..+++ +.+|.+.... ..|+.-.... .-....+.+.|.+++ + ....+.+|.|.-
T Consensus 320 ~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~-~-g~~~G~~G~il~ 395 (398)
T PLN00033 320 EADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDK-K-GFVLGNDGVLLR 395 (398)
T ss_pred ecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCC-c-eEEEeCCcEEEE
Confidence 11111222444444566665554 4577666653 4444333322 224578899997766 3 555677887765
Q ss_pred e
Q 042434 509 W 509 (517)
Q Consensus 509 w 509 (517)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 5
No 459
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.40 E-value=0.33 Score=29.21 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=26.0
Q ss_pred CcEEEEEECCC-C--CEEEEeeCCCcEEEEEecC
Q 042434 223 NEVWFVQFSNN-G--EYLASSSSDCSAIIWKVLE 253 (517)
Q Consensus 223 ~~v~~~~~s~~-~--~~l~t~~~dg~i~iw~~~~ 253 (517)
++|.++.|||+ + .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 57899999984 4 5888888889999999963
No 460
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.35 E-value=0.41 Score=41.77 Aligned_cols=64 Identities=14% Similarity=0.295 Sum_probs=48.7
Q ss_pred CCCCcEEEEecCCCcEEEEecCCCceeEEe-------c-------CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 448 GLDGTFIASGSENSQIYIWNRRNSKPIEIL-------S-------GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 448 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~-------~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
..++.++++-+.+|.+++||+.+++.+..- . .....|..+..+.+| .-+++-+ +|..+.|+.+-
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEecccc
Confidence 457889999999999999999988754432 1 245678999999888 5666665 47788888753
No 461
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.31 E-value=7.4 Score=41.23 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=88.4
Q ss_pred CCcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC--CCCCceEEEEEeC
Q 042434 243 DCSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG--DHGFIVSSCAWFP 319 (517)
Q Consensus 243 dg~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~ 319 (517)
+|.++.|++... .+++..+. ..-.++|.+ ..|-..++++| ....+++||+...+.++... .....|+.+.+.
T Consensus 911 ~g~~ytyk~~~~g~~lellh~-T~~~~~v~A--i~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~- 985 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHK-TEIPGPVGA--ICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY- 985 (1205)
T ss_pred CCceEEEEEEecCceeeeeec-cCCCccceE--EeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec-
Confidence 455777776433 33333322 122344544 45655566654 45589999998877665443 235677888775
Q ss_pred CCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 042434 320 DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT 384 (517)
Q Consensus 320 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 384 (517)
+..+++|.....+..+.|+..++++..+......+-......-|...++.+..-|.+.+..+..
T Consensus 986 -~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 986 -GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred -ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECCC
Confidence 6789999988888899999999998888766544333333344556778888888877776644
No 462
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.20 E-value=5.9 Score=35.31 Aligned_cols=182 Identities=13% Similarity=0.073 Sum_probs=103.4
Q ss_pred CcEEEEEECCCCCEEEEeeCCC--cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434 223 NEVWFVQFSNNGEYLASSSSDC--SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 300 (517)
.-...+.|..+|.++-+.+.-| .|+.+|+.+++.... ..+.. .----.++.. +++...-.-.++...+||..+.+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-~~l~~-~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQS-VPLPP-RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEE-EE-TT-T--EEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEE-EECCc-cccceeEEEE-CCEEEEEEecCCeEEEEccccce
Confidence 3455677878888888877766 688888877653322 22221 1111223333 23333444568899999999999
Q ss_pred EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe-eEeee----CcCCCceEEEEEccCCCEEEEEeCCC
Q 042434 301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWR----GTRIPKVLDLAVTPDGENLISVLSDK 375 (517)
Q Consensus 301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg 375 (517)
.+.++.-. ..=+.++ .|++.|+.+..... ++.+|+.+-. ...+. +.....++.+.+- +|...+=.-...
T Consensus 122 ~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~--L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 122 KIGTFPYP-GEGWGLT--SDGKRLIMSDGSSR--LYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp EEEEEE-S-SS--EEE--ECSSCEEEE-SSSE--EEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSS
T ss_pred EEEEEecC-CcceEEE--cCCCEEEEECCccc--eEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCC
Confidence 99888543 3446666 45666666544444 9999987532 22222 1222345566665 565555555667
Q ss_pred cEEEEECCCceEEe-e----------------ccCCCeeEEEEcCCCCEEEEEeC
Q 042434 376 DIRILNLGTYAERV-I----------------SEEHPITSLSVSVDCKNFIVNLN 413 (517)
Q Consensus 376 ~i~i~d~~~~~~~~-~----------------~~~~~i~~~~~s~~~~~l~~~~~ 413 (517)
.|...|..++.... . ....-.+.+++.|..+.+++.+.
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 78888888876211 1 01345789999998777776654
No 463
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=93.16 E-value=6 Score=40.51 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=47.6
Q ss_pred eEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434 397 TSLSVSVDCKNFIVNLNSQ-----EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS 471 (517)
Q Consensus 397 ~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 471 (517)
..++|-|+|..+++-..|| .+.++.-++. ..-.+.-......-....+|......++ ....+.|.+|-..+-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGL--rHGef~lr~~~dEk~~~~~wn~~s~vla-v~~~n~~~lwttkNy 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGL--RHGEFDLRVGCDEKAFLENWNLLSTVLA-VAEGNLLKLWTTKNY 326 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCc--ccCCccccCCchhhhhhhhhhHHHHHHH-HhhcceEEEEEccce
Confidence 4588999999999877655 3555554332 1001100000000011122222222233 334567999987665
Q ss_pred ceeEEecCCCCCeeEEEecCCCCcEE
Q 042434 472 KPIEILSGHSMTVNCVSWNPKRPKML 497 (517)
Q Consensus 472 ~~~~~~~~h~~~v~~v~~~~~~~~~l 497 (517)
..-....-.-..+.-+.|+|...+.+
T Consensus 327 hWYLK~e~~ip~~s~vkwhpe~~nTl 352 (1243)
T COG5290 327 HWYLKVERQIPGISYVKWHPEEKNTL 352 (1243)
T ss_pred EEEEEEeecCCCcceeeeccccCcEE
Confidence 43322222334566678888654333
No 464
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.15 E-value=0.12 Score=52.67 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=57.4
Q ss_pred cCcEEEEEEC---CCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEE-----------ECCCCCeEEEEeC
Q 042434 222 KNEVWFVQFS---NNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVA-----------WSPDDTKLLTCGN 287 (517)
Q Consensus 222 ~~~v~~~~~s---~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~-----------~s~~~~~l~s~~~ 287 (517)
...+.-+.|. ++.-++..+-.++.|++.++..... ..+.+|...+..++ .||||+.++.++.
T Consensus 180 gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~ 255 (1283)
T KOG1916|consen 180 GSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS 255 (1283)
T ss_pred CCCcceeeecccccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeec
Confidence 3344444444 4777888888899999887753322 34555776666554 5899999999999
Q ss_pred CCeEEEEECC-----CCcEEEEeCCCC
Q 042434 288 AEVLKLWDVE-----TGICKHTFGDHG 309 (517)
Q Consensus 288 dg~i~iwd~~-----~~~~~~~~~~~~ 309 (517)
||.++.|.+. .-.|.+..+.|+
T Consensus 256 dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 256 DGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred CCccceeeeeeeccccHhhhhccCCCC
Confidence 9988888653 234556666775
No 465
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=92.70 E-value=12 Score=37.67 Aligned_cols=247 Identities=11% Similarity=0.120 Sum_probs=108.0
Q ss_pred CCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccC-CCCEEEEEECCCC-CeEEEEeCCC--eEEEEECCCCcEEEEeC
Q 042434 231 SNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSH-QNPVSFVAWSPDD-TKLLTCGNAE--VLKLWDVETGICKHTFG 306 (517)
Q Consensus 231 s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~-~~l~s~~~dg--~i~iwd~~~~~~~~~~~ 306 (517)
..++..++.+..+|.+....+..... .......+. ....+++.+..+| .+++.||.-| .+.-|....-+.+..+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~-~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~- 296 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGG-SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL- 296 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEE-EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCC-eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec-
Confidence 45677888899999998887764432 111122222 4455666666554 4777777654 4555553333445555
Q ss_pred CCCCceEEEEEeCC----CC------eEEEee---CCCceeEEEEeCCCC--eeEeeeCcCCCceEEEEEcc-CCCEEEE
Q 042434 307 DHGFIVSSCAWFPD----SK------RLVCGS---SDTEKGIFMCDCDGN--EIKAWRGTRIPKVLDLAVTP-DGENLIS 370 (517)
Q Consensus 307 ~~~~~v~~i~~~~~----~~------~l~~~~---~d~~v~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 370 (517)
..-++|..++..+. .. .+++++ .+|.+++......-. ............+..+.... ++.+++.
T Consensus 297 ~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 297 PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEE
T ss_pred cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEE
Confidence 44567888887532 11 455543 355644443322222 11111111111222232222 1446666
Q ss_pred EeCCCcEEEEECC---CceEE-eeccCCCeeEEEEcCCCCEEEEEeC---------CCeEEEEEcCCCCccceEEeCccc
Q 042434 371 VLSDKDIRILNLG---TYAER-VISEEHPITSLSVSVDCKNFIVNLN---------SQEIHMWDVAGKWEKPFKYTGHSQ 437 (517)
Q Consensus 371 ~~~dg~i~i~d~~---~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~ 437 (517)
+..+. -+++.+. ..... .... . .|..+...++++.. ...|++.+.... ......... .
T Consensus 377 S~~~~-T~vl~~~~~d~~e~~~e~~~-----~-~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~-~~~~~w~~~-~ 447 (504)
T PF10433_consen 377 SFPNE-TRVLQISEGDDGEEVEEVEE-----D-GFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDG-KLTQEWKPP-A 447 (504)
T ss_dssp EESSE-EEEEEES----SSEEEEE---------TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSST-SEEEEEE-T-T
T ss_pred EcCCc-eEEEEEecccCCcchhhhhh-----c-cCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCC-eEEEEEeCC-C
Confidence 55443 3344443 11110 0000 0 12222333333322 334777776443 222222111 1
Q ss_pred CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-C----CCCCeeEEEecC
Q 042434 438 NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-G----HSMTVNCVSWNP 491 (517)
Q Consensus 438 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~----h~~~v~~v~~~~ 491 (517)
... |..+ +-++.+++.+..++.+..+.+.......... . ....|.|+...|
T Consensus 448 ~~~-I~~a--~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 448 GSI-IVAA--SINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp S----SEE--EESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CCe-EEEE--EECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 111 2222 2345567777778889999887766543322 1 457788887766
No 466
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.69 E-value=8.8 Score=36.00 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=55.7
Q ss_pred CCCeEEEEeCCC-----eEEEEECCCCcE---EEEeCCCCCce--EEEEEeCCCCeEEEeeCCC---ceeEEEEeCCCCe
Q 042434 278 DDTKLLTCGNAE-----VLKLWDVETGIC---KHTFGDHGFIV--SSCAWFPDSKRLVCGSSDT---EKGIFMCDCDGNE 344 (517)
Q Consensus 278 ~~~~l~s~~~dg-----~i~iwd~~~~~~---~~~~~~~~~~v--~~i~~~~~~~~l~~~~~d~---~v~i~~~~~~~~~ 344 (517)
++..++.|+.++ .+..+|+.+.+. ...+.....+. .+++. -+++..+.|+..+ .-.++.+|+....
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 456667777543 566777766653 12222111111 12222 2566777776421 1238888887654
Q ss_pred eEeeeCcC-CCceEEEEEccCCCEEEEEeCCC----cEEEEECCCce
Q 042434 345 IKAWRGTR-IPKVLDLAVTPDGENLISVLSDK----DIRILNLGTYA 386 (517)
Q Consensus 345 ~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~ 386 (517)
-....... .......+...+++..+.|+.++ .+.+||..+.+
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 43332111 11222233344667777777654 35688988776
No 467
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=92.63 E-value=0.21 Score=35.07 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhcChHHHHHHHhhhcCeeec
Q 042434 18 EFVRVVVQCLYSLGYQKSASCLESESGVSYK 48 (517)
Q Consensus 18 ~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~ 48 (517)
-++.||..||.-+||+-|+.+|+.|+|.+-.
T Consensus 20 Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~ 50 (81)
T PF09398_consen 20 LINELIREYLEFNNLDYTLSVFQPESGQPEE 50 (81)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred HHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence 3678999999999999999999999998643
No 468
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.55 E-value=16 Score=38.72 Aligned_cols=71 Identities=10% Similarity=0.077 Sum_probs=43.1
Q ss_pred ECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEE------e--ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434 230 FSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHT------L--RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC 301 (517)
Q Consensus 230 ~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~------~--~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 301 (517)
+..-|+.|..|+.||.+.+|.+........... + ..+..+|..+...+.-..+++ -.|+.+.++++.+-+.
T Consensus 22 va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 22 VAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPELEP 100 (877)
T ss_pred HHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeecCcccc
Confidence 345678899999999999999865422111111 0 112456666666655545444 3466788887766554
No 469
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.36 E-value=10 Score=35.97 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=27.8
Q ss_pred CCCeEEEeeCCC---------ceeEEEEeCCCCeeEeeeCcCCCceEE-EEE-ccCCCEEEEEeCC
Q 042434 320 DSKRLVCGSSDT---------EKGIFMCDCDGNEIKAWRGTRIPKVLD-LAV-TPDGENLISVLSD 374 (517)
Q Consensus 320 ~~~~l~~~~~d~---------~v~i~~~~~~~~~~~~~~~~~~~~i~~-~~~-~~~~~~l~~~~~d 374 (517)
+++..+.|+.+. .-.++.||.....-............. ... .-+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 567777777532 123788888765544332111001111 112 3467777777654
No 470
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.79 E-value=8 Score=33.48 Aligned_cols=213 Identities=12% Similarity=0.146 Sum_probs=105.4
Q ss_pred CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC---CeEEEEeCCCeEEEEECC--CCcEEEEe---C
Q 042434 235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD---TKLLTCGNAEVLKLWDVE--TGICKHTF---G 306 (517)
Q Consensus 235 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~~dg~i~iwd~~--~~~~~~~~---~ 306 (517)
.++..-=..|.|.-||.....-. ..++.+. ++.++.+--.+ .+.+.++..-.|.-||.. .-...+++ +
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~--ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~ 103 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVY--RAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ 103 (310)
T ss_pred eEEEEEeccCceehhhhhhhheE--EEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccC
Confidence 34444344566767888643221 2222221 13333332222 233334444345557732 22233331 1
Q ss_pred --CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCC--------CceEEEEEccCCCEEEEE-eCCC
Q 042434 307 --DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRI--------PKVLDLAVTPDGENLISV-LSDK 375 (517)
Q Consensus 307 --~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~-~~dg 375 (517)
........-..+|+|++++-.-.|-. ..+...+..+..+...|. +--+.++|+.+.+.+... +.+-
T Consensus 104 ~d~kknR~NDgkvdP~Gryy~GtMad~~---~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~ 180 (310)
T KOG4499|consen 104 PDRKKNRLNDGKVDPDGRYYGGTMADFG---DDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNY 180 (310)
T ss_pred chHHhcccccCccCCCCceeeeeecccc---ccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCce
Confidence 11344555667899998443222211 122222333333332221 123567888887766544 4566
Q ss_pred cEEEEE--CCCce----EEee-------ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEE
Q 042434 376 DIRILN--LGTYA----ERVI-------SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI 442 (517)
Q Consensus 376 ~i~i~d--~~~~~----~~~~-------~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i 442 (517)
.|.-|| ..++. ...+ ........+++..+|...+++-..++|...|..++ +....+.-.... ..
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG-K~L~eiklPt~q--it 257 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG-KILLEIKLPTPQ--IT 257 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC-cEEEEEEcCCCc--eE
Confidence 776677 44443 1111 01122345667778999999999999999999887 555555444332 23
Q ss_pred EeecCCCCCcEEEEe
Q 042434 443 RSCFGGLDGTFIASG 457 (517)
Q Consensus 443 ~~~~~s~~~~~l~~~ 457 (517)
.+|+..++-..+++.
T Consensus 258 sccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 258 SCCFGGKNLDILYVT 272 (310)
T ss_pred EEEecCCCccEEEEE
Confidence 344445544444443
No 471
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.76 E-value=1.5 Score=38.25 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=46.7
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCceEEee----------------ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434 361 VTPDGENLISVLSDKDIRILNLGTYAERVI----------------SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG 424 (517)
Q Consensus 361 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 424 (517)
+..++.++++.+.+|.+++||+.+.+.... .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 455788999999999999999998772211 2445678888888887766554 57788888643
No 472
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.47 E-value=1.2 Score=45.36 Aligned_cols=73 Identities=26% Similarity=0.337 Sum_probs=44.9
Q ss_pred CCCCEEEEeeCCCcEEEEEecC----CCeeeEEEEecc--------------------CCCCEEEEEECC----CCCeEE
Q 042434 232 NNGEYLASSSSDCSAIIWKVLE----DSKLTLKHTLRS--------------------HQNPVSFVAWSP----DDTKLL 283 (517)
Q Consensus 232 ~~~~~l~t~~~dg~i~iw~~~~----~~~~~~~~~~~~--------------------h~~~v~~l~~s~----~~~~l~ 283 (517)
++...++.+..||.+....... +...... .+.. ..+.+..++.++ +..+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEE-LFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEE-EeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEE
Confidence 4666777778888888777653 1111111 1111 124466677766 778999
Q ss_pred EEeCCCeEEEEECCCCcEEEEe
Q 042434 284 TCGNAEVLKLWDVETGICKHTF 305 (517)
Q Consensus 284 s~~~dg~i~iwd~~~~~~~~~~ 305 (517)
+.+.|+++++||+.+++++.+.
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEE
T ss_pred EEeCCCeEEEEECCCCeEEEEe
Confidence 9999999999999999997665
No 473
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.40 E-value=5.8 Score=31.07 Aligned_cols=114 Identities=13% Similarity=0.085 Sum_probs=63.0
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCce---------EEeeccCCCeeEEEEcC----CCCEEEEEeCCCeEEEEEcCCCC
Q 042434 360 AVTPDGENLISVLSDKDIRILNLGTYA---------ERVISEEHPITSLSVSV----DCKNFIVNLNSQEIHMWDVAGKW 426 (517)
Q Consensus 360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~i~~~~~s~----~~~~l~~~~~d~~i~~~d~~~~~ 426 (517)
.|......|++++..|+|.|++..... .........|++++-.+ +++-++.-+....+..||+....
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~ 84 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNS 84 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCc
Confidence 455555678888888999999875432 34555666777776544 23334444456679999997652
Q ss_pred ccceEEeCcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCCceeEE
Q 042434 427 EKPFKYTGHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNSKPIEI 476 (517)
Q Consensus 427 ~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 476 (517)
....+ ....+...+..-.+.. +..++++|+ +..|.-||..-.+...+
T Consensus 85 d~Fyk--e~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 85 DLFYK--EVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred hhhhh--hCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 22221 1222222222222222 344555554 56677777654444433
No 474
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.28 E-value=8.8 Score=39.03 Aligned_cols=78 Identities=15% Similarity=0.283 Sum_probs=48.3
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 300 (517)
....++++.-+|.|+-++.++.||+|++|+.......+ +. ....+-..+.|...| |+++..|..+.-|. ++|-
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk-i~---~~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgv 85 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK-IC---EEAKPKENLVFTNHG--LVTATSDRRALAWK-EDGV 85 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhh-hh---hhcCCccceeeeccc--eEEEeccchhheee-ccCc
Confidence 34557788888999999999999999999985432211 11 112333445555433 55666677777775 3443
Q ss_pred EEEEe
Q 042434 301 CKHTF 305 (517)
Q Consensus 301 ~~~~~ 305 (517)
..+.|
T Consensus 86 vqqqf 90 (1636)
T KOG3616|consen 86 VQQQF 90 (1636)
T ss_pred chhhc
Confidence 33333
No 475
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.27 E-value=11 Score=41.33 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=25.2
Q ss_pred CcEEEEEECCCCCEEEEeeCCCcEEEEEe
Q 042434 223 NEVWFVQFSNNGEYLASSSSDCSAIIWKV 251 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~ 251 (517)
.....++|+|...++|.|+.+|.|+++-.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~ 64 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQ 64 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecc
Confidence 35567899999999999999999999965
No 476
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.04 E-value=14 Score=34.77 Aligned_cols=108 Identities=14% Similarity=0.163 Sum_probs=65.4
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCc------EEEEEecCC----CeeeEE--EEeccCCC--------CEEEEEECCCCC
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCS------AIIWKVLED----SKLTLK--HTLRSHQN--------PVSFVAWSPDDT 280 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~------i~iw~~~~~----~~~~~~--~~~~~h~~--------~v~~l~~s~~~~ 280 (517)
.-+.+..+.+.|++..+++.+.+|. +...++... ...... ..+..-.+ ..-+|++.+++.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3466778889865555666667776 555554321 111111 11221122 334788877888
Q ss_pred eEEEEeCC------CeEEEEECCCCcEEEEeC---------------CCCCceEEEEEeCCCCeEEEeeC
Q 042434 281 KLLTCGNA------EVLKLWDVETGICKHTFG---------------DHGFIVSSCAWFPDSKRLVCGSS 329 (517)
Q Consensus 281 ~l~s~~~d------g~i~iwd~~~~~~~~~~~---------------~~~~~v~~i~~~~~~~~l~~~~~ 329 (517)
++++.-.+ ..|..++.. |+....+. ......-+++++|+|+.|+++..
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 88877666 778888865 66544431 13456889999999997776544
No 477
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=90.98 E-value=14 Score=37.94 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=57.7
Q ss_pred EEEEeCCCCeEEEeeCCC---ceeEEEEeCCCCeeEee--eCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--
Q 042434 314 SCAWFPDSKRLVCGSSDT---EKGIFMCDCDGNEIKAW--RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-- 386 (517)
Q Consensus 314 ~i~~~~~~~~l~~~~~d~---~v~i~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-- 386 (517)
.+.|-|+|..+++-+.|| +..+..+..+|-.-..+ .......+...+|+-....++ ....+.+.+|-..+..
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vla-v~~~n~~~lwttkNyhWY 329 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLA-VAEGNLLKLWTTKNYHWY 329 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHH-HhhcceEEEEEccceEEE
Confidence 488999999999977554 34466665554222111 111112345556654443333 3355678999877765
Q ss_pred EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434 387 ERVISEEHPITSLSVSVDCKNFIVNLNSQEIH 418 (517)
Q Consensus 387 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 418 (517)
......-..+.-+.|+|....-+.-+..+.|.
T Consensus 330 LK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~ 361 (1243)
T COG5290 330 LKVERQIPGISYVKWHPEEKNTLLFRDGERIL 361 (1243)
T ss_pred EEEeecCCCcceeeeccccCcEEEEecCCeEE
Confidence 22333344566788888655444333344443
No 478
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.77 E-value=26 Score=37.47 Aligned_cols=190 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred cccccCCCCCccccccCCCcccccCCCcccEEEeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEe--cCCCeeeEEE
Q 042434 185 IDSCQYHNSSVAISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKV--LEDSKLTLKH 261 (517)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~--~~~~~~~~~~ 261 (517)
+..+.|+.. +.........++..|-..+..-.--..+...++|+| +...||.....|...||++ ..........
T Consensus 111 I~~p~~~~~---~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~ 187 (765)
T PF10214_consen 111 ILRPEYHRV---ISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR 187 (765)
T ss_pred EEEcccccc---cccccCCccccccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCccee
Q ss_pred EeccCCCCE------E----EEEECCCCCeEEEEeCCCeEEEEECCCCcE--EEEeCCCCCceEEEEEeCC--CCeEEEe
Q 042434 262 TLRSHQNPV------S----FVAWSPDDTKLLTCGNAEVLKLWDVETGIC--KHTFGDHGFIVSSCAWFPD--SKRLVCG 327 (517)
Q Consensus 262 ~~~~h~~~v------~----~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~--~~~l~~~ 327 (517)
....+.+.+ . .+.|.++.+.|+.++.. .+.++|+++... .-........|..+.-+|. +..|+..
T Consensus 188 ~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT 266 (765)
T PF10214_consen 188 LSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT 266 (765)
T ss_pred eccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe
Q ss_pred eCCCceeEEEEeCCC---CeeEeeeCcCCCce----EEEEEccC-CC---EEEEEeCCCcEEEEEC
Q 042434 328 SSDTEKGIFMCDCDG---NEIKAWRGTRIPKV----LDLAVTPD-GE---NLISVLSDKDIRILNL 382 (517)
Q Consensus 328 ~~d~~v~i~~~~~~~---~~~~~~~~~~~~~i----~~~~~~~~-~~---~l~~~~~dg~i~i~d~ 382 (517)
+.. |..++... .....+.-.|.-.. ..+..... +. .++.......|.+|.+
T Consensus 267 s~e----iiw~~~~~~~~~~~~llSwkH~~d~~D~tLrl~~~~~~~~~~~~~lyS~~~~~v~v~~f 328 (765)
T PF10214_consen 267 SKE----IIWLDVKSSSEKLTRLLSWKHFRDPEDPTLRLSVQKVGDTDFVVFLYSRLNPLVYVYFF 328 (765)
T ss_pred cCe----EEEEEccCCCCCeeeeeecccccCCCCCceEEEEEEcCCCEEEEEEEcCCCCcEEEEEE
No 479
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.63 E-value=6.9 Score=30.64 Aligned_cols=113 Identities=19% Similarity=0.125 Sum_probs=65.4
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEEecCCCe-----eeEEEEeccCCCCEEEEEECC-----CCCeEEEEeCCCeEEEEEC
Q 042434 227 FVQFSNNGEYLASSSSDCSAIIWKVLEDSK-----LTLKHTLRSHQNPVSFVAWSP-----DDTKLLTCGNAEVLKLWDV 296 (517)
Q Consensus 227 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~-----~~~~~~~~~h~~~v~~l~~s~-----~~~~l~s~~~dg~i~iwd~ 296 (517)
.-.|......|+.++.-|.|.|++...... ...+..+ .-...|++++-.+ +...|+.|+ ...+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 345666666788888889999998753321 1122222 2456677776433 235566655 458999999
Q ss_pred CCCcEEEEeCCCCCceEEEEEeC----CCCeEEEeeCCCceeEEEEeCCCCee
Q 042434 297 ETGICKHTFGDHGFIVSSCAWFP----DSKRLVCGSSDTEKGIFMCDCDGNEI 345 (517)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~i~~~~----~~~~l~~~~~d~~v~i~~~~~~~~~~ 345 (517)
....-+.. +.-...|.++.+-. +...+++|+ +.. |.-+|..+..+
T Consensus 81 ~~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGG-ncs--i~Gfd~~G~e~ 129 (136)
T PF14781_consen 81 ENNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGG-NCS--IQGFDYEGNEI 129 (136)
T ss_pred ccCchhhh-hhCccceeEEEEEecCCCCCcEEEECc-eEE--EEEeCCCCcEE
Confidence 87655432 23346677776632 233444443 333 66666665443
No 480
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.58 E-value=1.2 Score=32.41 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=56.1
Q ss_pred CCCCCchHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchhh
Q 042434 10 PRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPV 89 (517)
Q Consensus 10 ~~~~~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~ 89 (517)
+=...+++++-.+++ ||+-.| .++-.++|.|+++-+ ..++.|+++..+..-... .....+
T Consensus 38 ~F~~Lt~d~LeFv~l-f~r~RG---nlKEvEr~lg~sYpt----------vR~kld~vlramgy~p~~------e~~~~i 97 (122)
T COG3877 38 KFEYLTSDQLEFVEL-FLRCRG---NLKEVERELGISYPT----------VRTKLDEVLRAMGYNPDS------ENSVNI 97 (122)
T ss_pred cccccCHhHhHHHHH-HHHHcc---CHHHHHHHHCCccHH----------HHHHHHHHHHHcCCCCCC------CChhhh
Confidence 344567777776665 778777 566789999998766 335566666655543222 234566
Q ss_pred hhhhhhHhhhcCC--hhHHHHHHHh
Q 042434 90 FKQCFLEYLNRGD--DSLALNVLRK 112 (517)
Q Consensus 90 ~~~~~~el~~~~~--~~~a~~~lr~ 112 (517)
-+.+++..++.|+ .++|+..|++
T Consensus 98 ~~~~i~~qle~Gei~peeA~~~L~k 122 (122)
T COG3877 98 GKKKIIDQLEKGEISPEEAIKMLNK 122 (122)
T ss_pred hHHHHHHHHHcCCCCHHHHHHHhcC
Confidence 7788899999887 5678888763
No 481
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=90.48 E-value=0.64 Score=35.05 Aligned_cols=76 Identities=25% Similarity=0.277 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhhhH
Q 042434 17 YEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLE 96 (517)
Q Consensus 17 ~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e 96 (517)
.|=...|..|++..| +++.+++|.|++|.+-- .+| |+++..|...... ...-...+..+++
T Consensus 36 ~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYPTvR-~rL---------d~ii~~lg~~~~~------~~~~~~~~~~IL~ 96 (113)
T PF09862_consen 36 PEQLEFIKLFIKNRG---NLKEMEKELGISYPTVR-NRL---------DKIIEKLGYEEDE------EEEEEDERKEILD 96 (113)
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHCCCcHHHH-HHH---------HHHHHHhCCCCCc------ccccchhHHHHHH
Confidence 344567889999999 78899999999988721 222 2333333331111 1122235677888
Q ss_pred hhhcCC--hhHHHHHHH
Q 042434 97 YLNRGD--DSLALNVLR 111 (517)
Q Consensus 97 l~~~~~--~~~a~~~lr 111 (517)
.|+.|+ .++|++.|+
T Consensus 97 ~L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 97 KLEKGEISVEEALEILK 113 (113)
T ss_pred HHHcCCCCHHHHHHHhC
Confidence 898887 566777664
No 482
>PLN02153 epithiospecifier protein
Probab=90.42 E-value=16 Score=34.56 Aligned_cols=108 Identities=6% Similarity=-0.002 Sum_probs=53.9
Q ss_pred CCCeEEEEeCC-----CeEEEEECCCCcEEEE--eCC---CCCceEEEEEeCCCCeEEEeeCCCc---------eeEEEE
Q 042434 278 DDTKLLTCGNA-----EVLKLWDVETGICKHT--FGD---HGFIVSSCAWFPDSKRLVCGSSDTE---------KGIFMC 338 (517)
Q Consensus 278 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~---~~~~v~~i~~~~~~~~l~~~~~d~~---------v~i~~~ 338 (517)
++..++.|+.+ ..+.+||..+.+-... +.. ........+..-+++.++.|+.+.. -.++.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 46677777754 2577889877654321 110 1111122222335667777775421 136777
Q ss_pred eCCCCeeEeeeCcC---CCc-eEEEEEccCCCEEEEEeC-------------CCcEEEEECCCce
Q 042434 339 DCDGNEIKAWRGTR---IPK-VLDLAVTPDGENLISVLS-------------DKDIRILNLGTYA 386 (517)
Q Consensus 339 ~~~~~~~~~~~~~~---~~~-i~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~ 386 (517)
|.....-....... ... -.+++ .-+++.++.++. ...+.+||+.+.+
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 87765433322211 001 11222 235555555542 2468899998876
No 483
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.21 E-value=4.7 Score=41.46 Aligned_cols=105 Identities=11% Similarity=0.133 Sum_probs=67.7
Q ss_pred CCCEEEEeeCCCcEEEEEecC-------C---C-------eeeEEEEeccCCCCEEEEEEC--CCCCeEEEEeCCCeEEE
Q 042434 233 NGEYLASSSSDCSAIIWKVLE-------D---S-------KLTLKHTLRSHQNPVSFVAWS--PDDTKLLTCGNAEVLKL 293 (517)
Q Consensus 233 ~~~~l~t~~~dg~i~iw~~~~-------~---~-------~~~~~~~~~~h~~~v~~l~~s--~~~~~l~s~~~dg~i~i 293 (517)
+...|+.|..||.|.+|.++. . . ...+...+. -...++.++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 556889999999999997621 0 0 011112222 34578999998 77888888888887877
Q ss_pred EECCCC--cEEE-EeCCCCCceEEEEEeCCC---C---eEEEeeCCCceeEEEEeC
Q 042434 294 WDVETG--ICKH-TFGDHGFIVSSCAWFPDS---K---RLVCGSSDTEKGIFMCDC 340 (517)
Q Consensus 294 wd~~~~--~~~~-~~~~~~~~v~~i~~~~~~---~---~l~~~~~d~~v~i~~~~~ 340 (517)
|-.... +... .-..+...|.+|+|.++. . .+++++-.|. ++.|+.
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~--v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGE--VWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCc--EEEEEE
Confidence 755332 1111 111356778899998753 2 7788888998 555444
No 484
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=11 Score=31.97 Aligned_cols=178 Identities=13% Similarity=0.056 Sum_probs=94.0
Q ss_pred CCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEE-EEeCCCcEEEEECCCce-EEeeccCCCee
Q 042434 320 DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLI-SVLSDKDIRILNLGTYA-ERVISEEHPIT 397 (517)
Q Consensus 320 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~-~~~~~~~~~i~ 397 (517)
+|.++.+.+.-|..+|+.|++.+.+......-..+.+..=-...-|..+. ..-.+|.-..+|.++.+ .......+.-.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 56778888888877899999985443222111111121111111233332 33457778888887766 22222222222
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc--CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE
Q 042434 398 SLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ--NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE 475 (517)
Q Consensus 398 ~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 475 (517)
. +..|++.++.+.....++.-|..+. ....+...... ++..+.-+- --||...|-.-.+..|...|..+|+.+.
T Consensus 135 g--Lt~d~~~LimsdGsatL~frdP~tf-a~~~~v~VT~~g~pv~~LNELE-~VdG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 135 G--LTSDDKNLIMSDGSATLQFRDPKTF-AELDTVQVTDDGVPVSKLNELE-WVDGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred e--eecCCcceEeeCCceEEEecCHHHh-hhcceEEEEECCeeccccccee-eeccEEEEeeeeecceEEEcCCCCcEEE
Confidence 2 3345666777777777777776543 11111111111 111111111 1255555555555566666777777655
Q ss_pred Eec------------CCCCCeeEEEecCCCCcEEEEee
Q 042434 476 ILS------------GHSMTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 476 ~~~------------~h~~~v~~v~~~~~~~~~l~s~~ 501 (517)
.+. .|....+.+++.|++.++++||-
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 442 35567889999999867777763
No 485
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=89.72 E-value=36 Score=37.48 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=21.6
Q ss_pred eccccCcEEEEEECC--CCC-EE----EEeeCCCcEEEEEe
Q 042434 218 LTEHKNEVWFVQFSN--NGE-YL----ASSSSDCSAIIWKV 251 (517)
Q Consensus 218 l~~h~~~v~~~~~s~--~~~-~l----~t~~~dg~i~iw~~ 251 (517)
..||..+|.|....- ++. +| ++.+.||++.|=|.
T Consensus 343 gdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDf 383 (1899)
T KOG4659|consen 343 GDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDF 383 (1899)
T ss_pred cCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccc
Confidence 467888888876643 222 22 23457898888665
No 486
>PLN02193 nitrile-specifier protein
Probab=89.30 E-value=25 Score=35.08 Aligned_cols=148 Identities=9% Similarity=-0.100 Sum_probs=73.2
Q ss_pred CCCeEEEEeCCC-----eEEEEECCCCcEEEEeCC---CCCceEEEEEeCCCCeEEEeeCCCce---eEEEEeCCCCeeE
Q 042434 278 DDTKLLTCGNAE-----VLKLWDVETGICKHTFGD---HGFIVSSCAWFPDSKRLVCGSSDTEK---GIFMCDCDGNEIK 346 (517)
Q Consensus 278 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~~~~~d~~v---~i~~~~~~~~~~~ 346 (517)
++...+.|+.++ .+.++|+.+.+-...-.. ....-.+.+..-+++.++.|+.++.. .++.+|+....-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 456667777553 578889887654332111 11111111222356677777765421 2667777655433
Q ss_pred eeeCcC---CCceEEEEEccCCCEEEEEeCC----CcEEEEECCCceEEeecc-----CCCeeEEEEcCCCCEEEEEeCC
Q 042434 347 AWRGTR---IPKVLDLAVTPDGENLISVLSD----KDIRILNLGTYAERVISE-----EHPITSLSVSVDCKNFIVNLNS 414 (517)
Q Consensus 347 ~~~~~~---~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~d 414 (517)
...... ..........-+++.++.++.+ ..+.+||+.+.+-..... .......+..-+++.++.|+..
T Consensus 308 ~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 322110 0011111112356677776655 468999998877222211 1111112223355667777642
Q ss_pred --------------CeEEEEEcCCC
Q 042434 415 --------------QEIHMWDVAGK 425 (517)
Q Consensus 415 --------------~~i~~~d~~~~ 425 (517)
+.+.+||+.+.
T Consensus 388 ~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 388 AMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred CCccccccCccceeccEEEEEcCcC
Confidence 24788888654
No 487
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.18 E-value=22 Score=34.34 Aligned_cols=105 Identities=9% Similarity=0.072 Sum_probs=55.4
Q ss_pred eEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCc-----
Q 042434 312 VSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTY----- 385 (517)
Q Consensus 312 v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----- 385 (517)
...+..++++.+++.+... . ++.-...+... ..........+..+.+.+++..++++ ..|.+..-+-...
T Consensus 241 f~~v~~~~dG~~~~vg~~G-~--~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRG-N--FYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCc-c--EEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEecCCCCccccc
Confidence 3445566777666655443 3 44333333321 33333334478899999998877766 5555443222211
Q ss_pred eEEeec---cCCCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 042434 386 AERVIS---EEHPITSLSVSVDCKNFIVNLNSQEIHMWD 421 (517)
Q Consensus 386 ~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d 421 (517)
...... ....+..+.+.+++..+++| ..|.+....
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~ 354 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST 354 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC
Confidence 111111 22357888898877655554 556555443
No 488
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.98 E-value=2.1 Score=25.57 Aligned_cols=40 Identities=15% Similarity=0.059 Sum_probs=27.3
Q ss_pred CCCcEEEEec-CCCcEEEEecCCCceeEEecCCCCCeeEEEe
Q 042434 449 LDGTFIASGS-ENSQIYIWNRRNSKPIEILSGHSMTVNCVSW 489 (517)
Q Consensus 449 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 489 (517)
|++++|+++. .+++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 4666666554 5789999999999888877652 33344444
No 489
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=88.94 E-value=8 Score=40.86 Aligned_cols=76 Identities=13% Similarity=0.245 Sum_probs=53.6
Q ss_pred CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCe-ee-EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 042434 223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSK-LT-LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET 298 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~-~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 298 (517)
+.-.|+.....+..+++|...|.+.+++...... .. .-..-.+++.++..+.|.|+++.++.+-..|...+|....
T Consensus 149 ~DAvc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g 226 (1023)
T KOG2006|consen 149 GDAVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQG 226 (1023)
T ss_pred ccceeeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEecccc
Confidence 4445667777889999999999999998753211 10 1111123444777889999999999998889999997644
No 490
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.68 E-value=25 Score=38.61 Aligned_cols=138 Identities=13% Similarity=0.264 Sum_probs=82.9
Q ss_pred eCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE--------CCCCCeEEEEeCCCeEEEEECCC----CcE-----EE
Q 042434 241 SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW--------SPDDTKLLTCGNAEVLKLWDVET----GIC-----KH 303 (517)
Q Consensus 241 ~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~--------s~~~~~l~s~~~dg~i~iwd~~~----~~~-----~~ 303 (517)
+.|..+.+|++++++... .+.+-...|..+.. -|.=++++..+.--.|.++-+.- +.. ..
T Consensus 96 TiDn~L~lWny~~~~e~~---~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELA---EYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred EeCCeEEEEEcCCCCccc---cccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence 458899999998865553 33334445555443 33334454444555566664421 111 01
Q ss_pred EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEE--eCC----CC-e----------------eEeeeCcCCCceEEEE
Q 042434 304 TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMC--DCD----GN-E----------------IKAWRGTRIPKVLDLA 360 (517)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~--~~~----~~-~----------------~~~~~~~~~~~i~~~~ 360 (517)
++...+..|.|+....+|+.|++|- ||. +|.+ ... +. + +..+.+.+..+|..+.
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 2223467788999777777666654 445 5533 221 01 0 1111223455899999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCC
Q 042434 361 VTPDGENLISVLSDKDIRILNLGT 384 (517)
Q Consensus 361 ~~~~~~~l~~~~~dg~i~i~d~~~ 384 (517)
+......+.+-+..|+|.+||+..
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 998888999999999999999976
No 491
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.68 E-value=15 Score=31.62 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=39.6
Q ss_pred CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---C---eEEEE
Q 042434 235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---E---VLKLW 294 (517)
Q Consensus 235 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g---~i~iw 294 (517)
+.|..+...+.|.+|++. .+..+...++.. -+.|..+.++..|++|++--.+ . .+++|
T Consensus 29 d~Lfva~~g~~Vev~~l~-~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLE-QEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcc-cCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 344333556789999997 333455555554 3889999999999999986332 2 56665
No 492
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=88.40 E-value=13 Score=34.92 Aligned_cols=110 Identities=11% Similarity=0.015 Sum_probs=63.0
Q ss_pred CceEEEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCC----ceEEEEEccCCCE-----------------
Q 042434 310 FIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIP----KVLDLAVTPDGEN----------------- 367 (517)
Q Consensus 310 ~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~----------------- 367 (517)
+....++|...+.-++.+. .-| ++..+..++..........+ -..++.+.++|..
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlG---L~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a 191 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLG---LLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFA 191 (376)
T ss_pred CCcceEEeccCCCeEEEEeccee---eEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEe
Confidence 4456788887774444443 233 77777766553333222111 1233444443322
Q ss_pred EEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCC-CeEEEEEc
Q 042434 368 LISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNS-QEIHMWDV 422 (517)
Q Consensus 368 l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d-~~i~~~d~ 422 (517)
++.+..+|.+.-||..+.. ......-.-.+.++.|||+.+++++-.. ..|+-|=+
T Consensus 192 ~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi 248 (376)
T KOG1520|consen 192 ALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWI 248 (376)
T ss_pred eecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEe
Confidence 2233456788888888877 4555556667889999999998887543 24443333
No 493
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=88.35 E-value=22 Score=38.67 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=82.6
Q ss_pred CEEEEeeC---------CCcEEEEEecC-----C-----CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434 235 EYLASSSS---------DCSAIIWKVLE-----D-----SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD 295 (517)
Q Consensus 235 ~~l~t~~~---------dg~i~iw~~~~-----~-----~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 295 (517)
.|||+|.. -|.+.|+|+-. + .+++.+. .....++|..++=- +| +|+++ ....|.||+
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~-~eE~KGtVsavceV-~G-~l~~~-~GqKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELY-IEEQKGTVSAVCEV-RG-HLLSS-QGQKIIVRK 1122 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeee-hhhcccceEEEEEe-cc-EEEEc-cCcEEEEEE
Confidence 58888743 48899999842 1 1111111 12345777766643 45 45553 344799999
Q ss_pred CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcC-CCceEEEEEccCCC--EEEEEe
Q 042434 296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTR-IPKVLDLAVTPDGE--NLISVL 372 (517)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~--~l~~~~ 372 (517)
++.+..+.-..--.-++.-....--.++|+.|.--..+....|......+..+.... .-.+.++.|--+|. .++++.
T Consensus 1123 l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsD 1202 (1366)
T KOG1896|consen 1123 LDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD 1202 (1366)
T ss_pred eccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEc
Confidence 944332211111122222222223356777777777766777777666555444322 22577788877776 577888
Q ss_pred CCCcEEEEEC
Q 042434 373 SDKDIRILNL 382 (517)
Q Consensus 373 ~dg~i~i~d~ 382 (517)
.++.|++|-.
T Consensus 1203 a~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1203 ADRNIHVYMY 1212 (1366)
T ss_pred CCCcEEEEEe
Confidence 8898888754
No 494
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.31 E-value=2.3 Score=24.99 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=21.9
Q ss_pred EeccccCcEEEEEECCCCCEEEEeeC-C--CcEEEE
Q 042434 217 ILTEHKNEVWFVQFSNNGEYLASSSS-D--CSAIIW 249 (517)
Q Consensus 217 ~l~~h~~~v~~~~~s~~~~~l~t~~~-d--g~i~iw 249 (517)
.+....+.-.+..|||||++|+.++. + |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34445667888999999998887654 4 555555
No 495
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.08 E-value=20 Score=32.57 Aligned_cols=201 Identities=12% Similarity=0.115 Sum_probs=111.1
Q ss_pred CcEEEEEECCCCCEEEEeeCCCcEEEEEecCC----CeeeEEEEecc-----CCCCEEEEEECCCCC------------e
Q 042434 223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLED----SKLTLKHTLRS-----HQNPVSFVAWSPDDT------------K 281 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~----~~~~~~~~~~~-----h~~~v~~l~~s~~~~------------~ 281 (517)
-.-|.++++|.+.+-++....+...+||.... ....+..++.. .....+.+.|+.... .
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 34678999999988787777889999998621 11123333332 234577788775332 3
Q ss_pred EEEEeCCCeEEEEECCCCcE-----EEEeC-CCCCce-EEEEEeCC--CCeEEEeeC-CCceeEEEEeCCCCeeEe---e
Q 042434 282 LLTCGNAEVLKLWDVETGIC-----KHTFG-DHGFIV-SSCAWFPD--SKRLVCGSS-DTEKGIFMCDCDGNEIKA---W 348 (517)
Q Consensus 282 l~s~~~dg~i~iwd~~~~~~-----~~~~~-~~~~~v-~~i~~~~~--~~~l~~~~~-d~~v~i~~~~~~~~~~~~---~ 348 (517)
++.++.||+|.-|...-+.. ...+. .....| ..+++... +.+|..+.. .++ |-++|..-..+.. +
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~--IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGR--IDVFKGSFRPPPLPGSF 180 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCc--eEEecCccccccCCCCc
Confidence 56778999999998532221 12222 112223 34555432 455555443 445 5555544322211 0
Q ss_pred eCcC----CC-----------ceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeeccCC---CeeEEEEcC------C
Q 042434 349 RGTR----IP-----------KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEH---PITSLSVSV------D 404 (517)
Q Consensus 349 ~~~~----~~-----------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~i~~~~~s~------~ 404 (517)
.... .. .|+-..-.+++..=+.+..-|.|-+||+...-........ ....++..| .
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 0000 00 1111111222323334444578999998876654444333 345566655 4
Q ss_pred CCEEEEEeCCCeEEEEEcCCC
Q 042434 405 CKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 405 ~~~l~~~~~d~~i~~~d~~~~ 425 (517)
+..|+-...||+|..||..++
T Consensus 261 g~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred CCeEEeecCCceeEEecCCCC
Confidence 667777778999999998765
No 496
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.64 E-value=18 Score=32.10 Aligned_cols=134 Identities=16% Similarity=0.090 Sum_probs=75.6
Q ss_pred eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCC----CeeEeee--CcCCCceEEEEEc
Q 042434 290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDG----NEIKAWR--GTRIPKVLDLAVT 362 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~----~~~~~~~--~~~~~~i~~~~~~ 362 (517)
.-.+||+.+++....-........+-.+.+||+.+.+|+. +|.-.+..++... ....... -.....-.+....
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 3568999887654322233333444567889999999876 4444466666543 1111110 0111234456677
Q ss_pred cCCCEEEEEeCCC-cEEEEECCCce---EE--eec------cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 363 PDGENLISVLSDK-DIRILNLGTYA---ER--VIS------EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 363 ~~~~~l~~~~~dg-~i~i~d~~~~~---~~--~~~------~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
+||+.++.|+... +..+|.-.... .. ... ...--..+...|+|+.++.+..+. .+||..+.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 8999999888775 34455442211 11 111 112234567789999998887765 45576554
No 497
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.57 E-value=3.3 Score=24.63 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=23.6
Q ss_pred CCCCeEEEEe-CCCeEEEEECCCCcEEEEeCC
Q 042434 277 PDDTKLLTCG-NAEVLKLWDVETGICKHTFGD 307 (517)
Q Consensus 277 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~ 307 (517)
|++++|+++. .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666654 578999999999888877754
No 498
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.45 E-value=3 Score=24.49 Aligned_cols=31 Identities=10% Similarity=0.303 Sum_probs=21.9
Q ss_pred CCCCCeeEEEecCCCCcEEEEeeCC--CcEEEe
Q 042434 479 GHSMTVNCVSWNPKRPKMLASASDD--HTIRIW 509 (517)
Q Consensus 479 ~h~~~v~~v~~~~~~~~~l~s~~~d--g~v~iw 509 (517)
.....-....|+|||..++.++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455678899999997667777777 777776
No 499
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.10 E-value=28 Score=33.13 Aligned_cols=194 Identities=13% Similarity=0.206 Sum_probs=0.0
Q ss_pred eCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCce---EEEEEccCCCEEEEEeCC----CcEEEEECCCce---E
Q 042434 318 FPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKV---LDLAVTPDGENLISVLSD----KDIRILNLGTYA---E 387 (517)
Q Consensus 318 ~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~---~ 387 (517)
.|...+++....++- +++||+.++.+..+.......| ..+.+....--|++++.- ..|++|.+.... .
T Consensus 65 dp~kSlIigTdK~~G--L~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGG--LYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp -GGG-EEEEEETTTE--EEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred CcccceEEEEeCCCC--EEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Q ss_pred EeeccCCCe---------eEEEEcCCCC--EEEEEeCCCeEEEEEc--CCCCccceEEeCcccCceEEEeecCCCCCcEE
Q 042434 388 RVISEEHPI---------TSLSVSVDCK--NFIVNLNSQEIHMWDV--AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI 454 (517)
Q Consensus 388 ~~~~~~~~i---------~~~~~s~~~~--~l~~~~~d~~i~~~d~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 454 (517)
.......++ .|+--++... +.++...+|.+.-|.+ .............-.-...+..|.......+|
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Q ss_pred EEecCCCcEEEEecC-----CCceeEEecC--CCCCeeEEEe----cCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 455 ASGSENSQIYIWNRR-----NSKPIEILSG--HSMTVNCVSW----NPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 455 ~~~~~dg~i~iwd~~-----~~~~~~~~~~--h~~~v~~v~~----~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
+.|-++.-|.-|+.+ .++.+....+ ....|-.|+. ...| .+|+|.-.+++..||+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~g-YLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKG-YLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-E-EEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCe-EEEEEcCCCCeEEEEecCCC
No 500
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=86.59 E-value=37 Score=33.94 Aligned_cols=144 Identities=15% Similarity=0.063 Sum_probs=68.4
Q ss_pred EEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeeccCCC----eeEEEEcCCCCEEEE
Q 042434 335 IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHP----ITSLSVSVDCKNFIV 410 (517)
Q Consensus 335 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----i~~~~~s~~~~~l~~ 410 (517)
.+.+|..|.....+..... ....+...++|.+++... +.+..+|+-............ -..+...|+|++|+.
T Consensus 130 ~~~iD~~G~Vrw~~~~~~~-~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l 206 (477)
T PF05935_consen 130 TYLIDNNGDVRWYLPLDSG-SDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLIL 206 (477)
T ss_dssp EEEEETTS-EEEEE-GGGT---SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEE
T ss_pred EEEECCCccEEEEEccCcc-ccceeeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEE
Confidence 7777777765544433221 111166778888776555 778888887654222222221 355677788888877
Q ss_pred EeC--------------C--------C-eEEEEEcCCCCccceE------------EeCcccCceEEEeecCCC-CCcEE
Q 042434 411 NLN--------------S--------Q-EIHMWDVAGKWEKPFK------------YTGHSQNKYVIRSCFGGL-DGTFI 454 (517)
Q Consensus 411 ~~~--------------d--------~-~i~~~d~~~~~~~~~~------------~~~~~~~~~~i~~~~~s~-~~~~l 454 (517)
+.. | | .+..||+..-...... .......-..+.++.+.+ ++.++
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~ii 286 (477)
T PF05935_consen 207 ASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSII 286 (477)
T ss_dssp EEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEE
T ss_pred EeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEE
Confidence 761 1 1 2444554322111110 001111113345555555 66777
Q ss_pred EEecCCCcEEEEecCCCceeEEecCCC
Q 042434 455 ASGSENSQIYIWNRRNSKPIEILSGHS 481 (517)
Q Consensus 455 ~~~~~dg~i~iwd~~~~~~~~~~~~h~ 481 (517)
+++-.-..|...|.++++....+..|.
T Consensus 287 vSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 287 VSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred EEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 776666689999988998888876653
Done!