Query 042434
Match_columns 517
No_of_seqs 1083 out of 2893
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 10:19:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 2.5E-54 8.5E-59 420.3 39.3 287 215-512 101-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 1.6E-46 5.5E-51 352.6 42.6 293 212-512 22-320 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 1.5E-45 5.3E-50 349.4 44.6 292 210-510 43-340 (340)
4 2ynn_A Coatomer subunit beta'; 100.0 4.4E-45 1.5E-49 340.6 41.8 293 212-514 3-303 (304)
5 4ery_A WD repeat-containing pr 100.0 1.3E-44 4.6E-49 339.1 44.1 294 212-512 13-311 (312)
6 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.5E-45 3.3E-49 344.6 41.2 300 212-516 5-338 (345)
7 2pbi_B Guanine nucleotide-bind 100.0 2.1E-44 7E-49 343.3 41.9 292 210-510 52-354 (354)
8 3frx_A Guanine nucleotide-bind 100.0 7.5E-44 2.6E-48 334.5 42.3 292 213-514 8-318 (319)
9 3iz6_a 40S ribosomal protein R 100.0 4.1E-45 1.4E-49 351.9 34.5 302 209-517 53-379 (380)
10 2xzm_R RACK1; ribosome, transl 100.0 1.3E-43 4.4E-48 336.7 42.7 296 212-515 11-342 (343)
11 4gqb_B Methylosome protein 50; 100.0 1.1E-43 3.8E-48 335.7 34.1 286 220-514 28-332 (344)
12 4g56_B MGC81050 protein; prote 100.0 1.1E-43 3.7E-48 338.6 33.0 289 218-515 38-345 (357)
13 1nr0_A Actin interacting prote 100.0 1E-42 3.5E-47 356.1 41.4 320 183-512 148-610 (611)
14 1erj_A Transcriptional repress 100.0 2.6E-42 8.8E-47 334.0 40.1 285 220-515 62-391 (393)
15 2ymu_A WD-40 repeat protein; u 100.0 7.1E-42 2.4E-46 348.7 43.7 311 185-510 265-577 (577)
16 4aow_A Guanine nucleotide-bind 100.0 2.2E-41 7.6E-46 321.1 43.7 295 213-516 29-340 (340)
17 2hes_X YDR267CP; beta-propelle 100.0 1.2E-41 4.2E-46 321.0 40.4 293 212-514 4-329 (330)
18 1nr0_A Actin interacting prote 100.0 7.8E-42 2.7E-46 349.5 40.4 321 185-515 21-357 (611)
19 1gxr_A ESG1, transducin-like e 100.0 1.3E-40 4.5E-45 315.2 42.2 316 186-511 13-335 (337)
20 3zwl_B Eukaryotic translation 100.0 4.2E-40 1.4E-44 315.8 41.6 291 214-514 24-347 (369)
21 2ymu_A WD-40 repeat protein; u 100.0 9.7E-40 3.3E-44 332.9 44.9 313 185-512 224-538 (577)
22 3dm0_A Maltose-binding peripla 100.0 3.7E-40 1.3E-44 342.8 42.2 292 213-513 373-693 (694)
23 3ei3_B DNA damage-binding prot 100.0 5E-40 1.7E-44 317.3 38.2 292 212-513 63-382 (383)
24 2ynn_A Coatomer subunit beta'; 100.0 6.4E-40 2.2E-44 305.6 36.4 253 258-515 4-261 (304)
25 1sq9_A Antiviral protein SKI8; 100.0 3.3E-40 1.1E-44 320.2 34.7 294 213-515 7-397 (397)
26 3i2n_A WD repeat-containing pr 100.0 7.6E-40 2.6E-44 312.7 34.9 296 213-517 9-357 (357)
27 4e54_B DNA damage-binding prot 100.0 2.6E-40 9E-45 324.5 31.8 294 215-516 112-433 (435)
28 3odt_A Protein DOA1; ubiquitin 100.0 4.5E-39 1.5E-43 301.4 38.6 287 212-516 8-299 (313)
29 3k26_A Polycomb protein EED; W 100.0 2.3E-39 8E-44 310.4 36.7 290 216-513 12-366 (366)
30 1k8k_C P40, ARP2/3 complex 41 100.0 6.3E-40 2.2E-44 315.2 32.2 292 217-514 3-362 (372)
31 1vyh_C Platelet-activating fac 100.0 1.7E-39 5.7E-44 315.9 34.7 380 15-469 7-410 (410)
32 1r5m_A SIR4-interacting protei 100.0 4.4E-39 1.5E-43 314.9 36.0 316 184-512 47-424 (425)
33 2pm9_A Protein WEB1, protein t 100.0 1.2E-39 4.1E-44 318.3 28.5 323 184-514 14-415 (416)
34 2pm9_A Protein WEB1, protein t 100.0 1.2E-39 4.1E-44 318.2 27.5 289 221-515 11-339 (416)
35 1got_B GT-beta; complex (GTP-b 100.0 5.5E-38 1.9E-42 297.5 36.3 279 182-467 55-340 (340)
36 4gga_A P55CDC, cell division c 100.0 1.7E-37 5.9E-42 303.1 40.7 278 224-515 107-397 (420)
37 3gre_A Serine/threonine-protei 100.0 9.4E-39 3.2E-43 314.0 31.8 297 208-510 48-437 (437)
38 4a11_B DNA excision repair pro 100.0 1.3E-37 4.5E-42 302.8 38.8 300 212-516 33-368 (408)
39 3dwl_C Actin-related protein 2 100.0 2.8E-39 9.5E-44 311.4 26.6 288 217-511 6-377 (377)
40 3ow8_A WD repeat-containing pr 100.0 1.1E-37 3.7E-42 292.5 36.2 280 181-469 31-320 (321)
41 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-37 3.6E-42 331.0 40.2 294 213-515 4-304 (814)
42 4ggc_A P55CDC, cell division c 100.0 6.7E-37 2.3E-41 287.4 40.8 278 225-516 28-318 (318)
43 1r5m_A SIR4-interacting protei 100.0 1.4E-37 4.8E-42 304.2 37.5 287 219-515 42-363 (425)
44 3vl1_A 26S proteasome regulato 100.0 3.7E-38 1.3E-42 308.1 33.2 305 199-513 75-419 (420)
45 4aez_A CDC20, WD repeat-contai 100.0 1.2E-37 4E-42 302.4 36.4 286 215-516 84-383 (401)
46 4gqb_B Methylosome protein 50; 100.0 1E-37 3.5E-42 294.9 34.2 282 183-472 31-333 (344)
47 1yfq_A Cell cycle arrest prote 100.0 3E-37 1E-41 292.9 34.7 285 215-510 4-321 (342)
48 4h5i_A Guanine nucleotide-exch 100.0 6.2E-38 2.1E-42 299.6 29.2 283 222-514 14-344 (365)
49 3f3f_A Nucleoporin SEH1; struc 100.0 3.4E-37 1.2E-41 293.0 32.2 295 215-516 4-340 (351)
50 3frx_A Guanine nucleotide-bind 100.0 1E-36 3.5E-41 285.9 34.9 281 183-471 18-318 (319)
51 2pm7_B Protein transport prote 100.0 9.8E-37 3.3E-41 283.1 34.3 264 215-513 2-285 (297)
52 3v7d_B Cell division control p 100.0 3.6E-36 1.2E-40 298.0 40.0 285 213-516 112-424 (464)
53 1gxr_A ESG1, transducin-like e 100.0 4.9E-37 1.7E-41 290.6 32.1 283 221-516 8-299 (337)
54 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-36 4.1E-41 337.2 39.8 309 201-515 636-1036(1249)
55 2pbi_B Guanine nucleotide-bind 100.0 1E-36 3.5E-41 290.1 33.8 281 181-467 63-354 (354)
56 3mmy_A MRNA export factor; mRN 100.0 2.6E-36 9E-41 289.3 36.9 297 207-512 24-345 (368)
57 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.3E-36 7.8E-41 286.8 34.7 288 184-477 18-342 (345)
58 3sfz_A APAF-1, apoptotic pepti 100.0 3.1E-36 1.1E-40 333.9 41.3 289 214-512 607-912 (1249)
59 3dw8_B Serine/threonine-protei 100.0 2.7E-36 9.3E-41 297.4 36.5 285 220-511 26-444 (447)
60 1erj_A Transcriptional repress 100.0 5.1E-36 1.7E-40 289.8 36.7 283 182-471 64-390 (393)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.4E-36 2.9E-40 293.6 38.7 301 196-515 133-444 (445)
62 1pgu_A Actin interacting prote 100.0 5.6E-36 1.9E-40 307.5 38.2 318 183-512 19-365 (615)
63 3vl1_A 26S proteasome regulato 100.0 1.6E-37 5.3E-42 303.7 24.7 279 224-514 58-366 (420)
64 1p22_A F-BOX/WD-repeat protein 100.0 1.3E-35 4.3E-40 291.3 37.0 277 215-515 126-416 (435)
65 2j04_B YDR362CP, TAU91; beta p 100.0 3.1E-37 1.1E-41 306.0 25.7 291 216-514 201-518 (524)
66 1pgu_A Actin interacting prote 100.0 1.6E-35 5.6E-40 304.0 38.5 316 183-513 161-614 (615)
67 4ery_A WD repeat-containing pr 100.0 1.9E-35 6.4E-40 276.8 35.5 252 257-515 13-270 (312)
68 2oaj_A Protein SNI1; WD40 repe 100.0 8.1E-36 2.8E-40 316.0 36.8 195 183-386 18-244 (902)
69 2hes_X YDR267CP; beta-propelle 100.0 1E-35 3.4E-40 280.6 32.8 279 185-470 17-328 (330)
70 2xzm_R RACK1; ribosome, transl 100.0 1.6E-35 5.4E-40 281.0 34.0 265 196-471 42-341 (343)
71 3bg1_A Protein SEC13 homolog; 100.0 2.8E-36 9.6E-41 282.5 28.2 248 216-469 7-292 (316)
72 3v7d_B Cell division control p 100.0 5.8E-35 2E-39 289.4 39.0 297 196-510 136-460 (464)
73 3iz6_a 40S ribosomal protein R 100.0 9.8E-37 3.4E-41 293.4 25.2 285 181-472 65-377 (380)
74 4g56_B MGC81050 protein; prote 100.0 6.6E-36 2.3E-40 284.7 29.7 284 181-472 41-345 (357)
75 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.3E-35 2.5E-39 286.9 37.8 280 213-516 109-394 (445)
76 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-35 4.1E-40 314.6 33.3 320 184-511 60-659 (902)
77 3mkq_A Coatomer beta'-subunit; 100.0 2.4E-34 8.1E-39 305.3 37.1 319 183-513 14-386 (814)
78 3bg1_A Protein SEC13 homolog; 100.0 3.8E-35 1.3E-39 274.8 26.1 245 262-513 8-293 (316)
79 3jrp_A Fusion protein of prote 100.0 2.9E-34 9.8E-39 276.3 31.8 255 213-470 2-287 (379)
80 2aq5_A Coronin-1A; WD40 repeat 100.0 5.2E-35 1.8E-39 284.0 25.6 283 224-514 36-343 (402)
81 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.6E-33 5.5E-38 277.5 34.2 284 222-513 4-391 (450)
82 3dm0_A Maltose-binding peripla 100.0 1.9E-33 6.4E-38 292.3 36.2 267 196-469 398-692 (694)
83 4aez_A CDC20, WD repeat-contai 100.0 3.2E-33 1.1E-37 271.1 34.3 272 197-478 108-388 (401)
84 3jrp_A Fusion protein of prote 100.0 1.4E-33 4.8E-38 271.5 30.8 248 260-513 4-287 (379)
85 4aow_A Guanine nucleotide-bind 100.0 8.8E-33 3E-37 261.8 35.1 267 239-515 9-288 (340)
86 3zwl_B Eukaryotic translation 100.0 4.1E-33 1.4E-37 267.1 32.5 286 181-476 31-352 (369)
87 1sq9_A Antiviral protein SKI8; 100.0 9.8E-34 3.3E-38 274.6 27.2 284 182-472 16-397 (397)
88 2xyi_A Probable histone-bindin 100.0 7.7E-33 2.6E-37 270.8 32.2 248 261-513 122-410 (430)
89 3k26_A Polycomb protein EED; W 100.0 1.3E-33 4.5E-38 270.3 25.7 281 182-470 18-366 (366)
90 2j04_B YDR362CP, TAU91; beta p 100.0 5.8E-34 2E-38 282.6 23.7 269 211-513 123-428 (524)
91 4gga_A P55CDC, cell division c 100.0 3.2E-32 1.1E-36 265.7 34.8 278 201-489 124-414 (420)
92 2j04_A TAU60, YPL007P, hypothe 100.0 8.9E-34 3E-38 273.9 23.0 263 218-512 11-296 (588)
93 3jro_A Fusion protein of prote 100.0 5E-33 1.7E-37 290.6 30.5 267 215-515 2-287 (753)
94 3ei3_B DNA damage-binding prot 100.0 1.6E-32 5.4E-37 264.8 31.7 250 258-516 64-342 (383)
95 3gre_A Serine/threonine-protei 100.0 2.1E-33 7.2E-38 275.9 25.6 271 229-516 34-362 (437)
96 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-32 6.4E-37 256.3 30.6 282 183-478 19-304 (313)
97 1k8k_C P40, ARP2/3 complex 41 100.0 1.7E-32 6E-37 263.2 30.9 244 263-513 4-274 (372)
98 3dwl_C Actin-related protein 2 100.0 1.1E-33 3.6E-38 272.4 20.5 242 263-512 7-280 (377)
99 3i2n_A WD repeat-containing pr 100.0 1.1E-32 3.7E-37 263.1 27.2 284 182-473 18-356 (357)
100 3dw8_B Serine/threonine-protei 100.0 2E-32 6.8E-37 269.7 28.2 245 266-515 27-375 (447)
101 4a11_B DNA excision repair pro 100.0 7.2E-32 2.5E-36 262.2 31.2 321 182-515 43-407 (408)
102 3vu4_A KMHSV2; beta-propeller 100.0 1.5E-31 5.1E-36 254.6 32.4 281 212-515 9-338 (355)
103 2aq5_A Coronin-1A; WD40 repeat 100.0 2.7E-32 9.2E-37 264.8 26.6 256 213-473 72-345 (402)
104 3bws_A Protein LP49; two-domai 100.0 5.1E-31 1.7E-35 258.6 35.5 290 213-513 114-432 (433)
105 1yfq_A Cell cycle arrest prote 100.0 6.1E-32 2.1E-36 256.3 27.8 247 261-516 5-285 (342)
106 4e54_B DNA damage-binding prot 100.0 7.1E-32 2.4E-36 264.5 29.0 249 262-516 114-390 (435)
107 2j04_A TAU60, YPL007P, hypothe 100.0 5.8E-33 2E-37 268.2 19.4 244 220-502 83-350 (588)
108 1l0q_A Surface layer protein; 100.0 2.6E-30 9E-35 249.9 37.3 267 235-515 3-277 (391)
109 3lrv_A PRE-mRNA-splicing facto 100.0 8.5E-32 2.9E-36 255.4 26.0 266 229-511 43-331 (343)
110 4h5i_A Guanine nucleotide-exch 100.0 1.9E-31 6.5E-36 254.6 26.3 246 216-471 67-344 (365)
111 1l0q_A Surface layer protein; 100.0 3.1E-29 1.1E-33 242.4 41.1 300 202-515 12-344 (391)
112 4gq1_A NUP37; propeller, trans 100.0 1.9E-31 6.6E-36 257.5 23.4 263 218-511 85-387 (393)
113 1p22_A F-BOX/WD-repeat protein 100.0 1.9E-30 6.7E-35 254.4 30.8 274 196-490 147-433 (435)
114 2w18_A PALB2, fancn, partner a 100.0 2.9E-30 9.9E-35 234.3 29.2 256 224-511 41-355 (356)
115 4ggc_A P55CDC, cell division c 100.0 1.1E-29 3.9E-34 238.0 34.5 262 200-472 43-317 (318)
116 2xyi_A Probable histone-bindin 100.0 1.4E-30 4.9E-35 254.8 29.0 251 215-471 121-411 (430)
117 3mmy_A MRNA export factor; mRN 100.0 6.9E-30 2.4E-34 244.5 29.3 253 258-516 30-307 (368)
118 2pm7_B Protein transport prote 100.0 6.5E-30 2.2E-34 237.1 27.7 241 183-424 10-285 (297)
119 3f3f_A Nucleoporin SEH1; struc 100.0 3.8E-29 1.3E-33 237.3 25.9 290 182-477 11-344 (351)
120 3lrv_A PRE-mRNA-splicing facto 100.0 2E-29 6.7E-34 239.1 22.1 230 274-515 43-294 (343)
121 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.6E-28 5.4E-33 241.9 29.0 235 268-511 5-337 (450)
122 3vu4_A KMHSV2; beta-propeller 100.0 2.8E-28 9.4E-33 232.0 28.6 240 258-515 10-273 (355)
123 3bws_A Protein LP49; two-domai 100.0 1.7E-27 5.8E-32 233.5 32.3 284 221-515 59-392 (433)
124 3jro_A Fusion protein of prote 100.0 2.3E-28 7.9E-33 255.4 24.5 243 180-425 7-286 (753)
125 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.5E-27 8.6E-32 230.0 27.4 277 204-493 95-409 (415)
126 1nir_A Nitrite reductase; hemo 100.0 8.7E-26 3E-30 225.8 36.2 303 203-516 160-517 (543)
127 1nir_A Nitrite reductase; hemo 100.0 6.3E-26 2.2E-30 226.8 31.9 275 229-516 144-461 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 100.0 6.8E-27 2.3E-31 226.9 23.9 282 222-514 62-388 (415)
129 2ecf_A Dipeptidyl peptidase IV 100.0 2.6E-26 8.9E-31 240.8 27.7 282 222-513 36-413 (741)
130 2w18_A PALB2, fancn, partner a 99.9 1.2E-25 4.1E-30 204.1 25.0 193 224-422 113-355 (356)
131 2ojh_A Uncharacterized protein 99.9 2.1E-25 7.3E-30 206.3 27.2 255 239-504 17-293 (297)
132 1ri6_A Putative isomerase YBHE 99.9 2.1E-24 7.3E-29 204.2 30.8 270 236-512 7-307 (343)
133 3u4y_A Uncharacterized protein 99.9 3.4E-24 1.2E-28 202.0 32.0 274 229-514 4-305 (331)
134 4gq1_A NUP37; propeller, trans 99.9 3.3E-25 1.1E-29 213.8 21.7 203 215-423 129-388 (393)
135 1k32_A Tricorn protease; prote 99.9 3.5E-24 1.2E-28 232.3 31.2 292 209-515 39-463 (1045)
136 2ecf_A Dipeptidyl peptidase IV 99.9 3.2E-24 1.1E-28 224.9 28.3 278 225-513 111-459 (741)
137 2z3z_A Dipeptidyl aminopeptida 99.9 8.5E-24 2.9E-28 220.4 31.1 282 223-515 82-437 (706)
138 1xfd_A DIP, dipeptidyl aminope 99.9 2.9E-24 9.8E-29 224.7 26.4 324 185-513 19-443 (723)
139 1xfd_A DIP, dipeptidyl aminope 99.9 9E-25 3.1E-29 228.5 22.2 280 224-513 18-393 (723)
140 3vgz_A Uncharacterized protein 99.9 1.2E-22 3.9E-27 193.2 34.8 269 221-502 39-334 (353)
141 1pby_B Quinohemoprotein amine 99.9 9.7E-24 3.3E-28 199.2 26.5 266 235-516 2-313 (337)
142 3hfq_A Uncharacterized protein 99.9 2.2E-22 7.6E-27 190.9 32.2 271 242-515 14-321 (347)
143 1k32_A Tricorn protease; prote 99.9 2.5E-23 8.7E-28 225.5 28.6 284 213-512 194-501 (1045)
144 2z3z_A Dipeptidyl aminopeptida 99.9 3.4E-23 1.2E-27 215.9 27.4 280 225-515 28-393 (706)
145 1ri6_A Putative isomerase YBHE 99.9 3.3E-22 1.1E-26 189.1 31.5 266 219-493 34-334 (343)
146 3o4h_A Acylamino-acid-releasin 99.9 4.9E-23 1.7E-27 209.5 26.7 272 221-513 20-315 (582)
147 3u4y_A Uncharacterized protein 99.9 1.1E-21 3.9E-26 184.7 32.1 287 202-493 20-326 (331)
148 3pe7_A Oligogalacturonate lyas 99.9 1.6E-22 5.6E-27 194.9 25.4 300 208-512 16-381 (388)
149 2ojh_A Uncharacterized protein 99.9 2.9E-22 9.8E-27 185.2 23.4 242 210-461 29-293 (297)
150 1jmx_B Amine dehydrogenase; ox 99.9 7.1E-22 2.4E-26 187.4 26.6 263 227-516 4-328 (349)
151 3scy_A Hypothetical bacterial 99.9 2.6E-20 8.9E-25 177.6 33.8 264 221-490 48-360 (361)
152 3vgz_A Uncharacterized protein 99.9 5.8E-21 2E-25 181.5 27.1 243 267-515 40-305 (353)
153 3scy_A Hypothetical bacterial 99.9 8.4E-20 2.9E-24 174.1 33.2 275 233-515 12-341 (361)
154 3hfq_A Uncharacterized protein 99.9 4.5E-20 1.5E-24 174.9 29.2 250 218-474 35-323 (347)
155 1pby_B Quinohemoprotein amine 99.9 9.3E-21 3.2E-25 178.7 24.3 261 204-481 13-321 (337)
156 3o4h_A Acylamino-acid-releasin 99.9 2.5E-21 8.4E-26 197.0 20.7 232 267-511 21-274 (582)
157 1z68_A Fibroblast activation p 99.9 1.9E-21 6.6E-26 203.0 20.2 276 227-513 20-391 (719)
158 2oit_A Nucleoporin 214KDA; NH2 99.9 3.8E-20 1.3E-24 180.0 27.6 202 221-425 35-279 (434)
159 1z68_A Fibroblast activation p 99.9 1.2E-20 4.2E-25 197.0 24.5 302 203-515 37-445 (719)
160 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.5E-19 5.3E-24 172.4 28.0 276 236-513 4-341 (365)
161 3c5m_A Oligogalacturonate lyas 99.9 2.7E-20 9.2E-25 179.8 19.9 289 209-511 17-380 (396)
162 2oit_A Nucleoporin 214KDA; NH2 99.8 2.7E-19 9.3E-24 174.0 26.2 164 220-385 90-279 (434)
163 4a5s_A Dipeptidyl peptidase 4 99.8 3E-19 1E-23 186.6 24.7 268 224-502 18-383 (740)
164 2oiz_A Aromatic amine dehydrog 99.8 2.3E-18 8E-23 163.4 27.0 279 203-493 32-359 (361)
165 1q7f_A NHL, brain tumor CG1071 99.8 1.2E-17 3.9E-22 153.7 30.8 244 265-517 27-284 (286)
166 3azo_A Aminopeptidase; POP fam 99.8 1.1E-18 3.7E-23 180.5 26.4 290 216-515 17-371 (662)
167 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.4E-18 8.4E-23 164.0 25.4 243 221-471 38-342 (365)
168 2dg1_A DRP35, lactonase; beta 99.8 1.5E-17 5E-22 156.6 28.9 271 223-502 6-300 (333)
169 2oiz_A Aromatic amine dehydrog 99.8 7.2E-18 2.5E-22 160.0 25.8 269 233-514 14-335 (361)
170 4a5s_A Dipeptidyl peptidase 4 99.8 2.5E-18 8.5E-23 179.6 24.3 304 201-515 35-451 (740)
171 3fvz_A Peptidyl-glycine alpha- 99.8 2.8E-17 9.6E-22 154.2 28.7 243 267-514 23-323 (329)
172 1q7f_A NHL, brain tumor CG1071 99.8 1.3E-16 4.3E-21 146.7 31.5 243 220-473 27-283 (286)
173 1jmx_B Amine dehydrogenase; ox 99.8 2E-17 6.8E-22 156.7 26.0 257 201-480 20-335 (349)
174 2gop_A Trilobed protease; beta 99.8 3.3E-17 1.1E-21 155.1 26.4 256 223-512 15-330 (347)
175 3pe7_A Oligogalacturonate lyas 99.8 1.4E-17 4.6E-22 160.4 23.4 252 259-515 22-331 (388)
176 2z2n_A Virginiamycin B lyase; 99.8 6.6E-15 2.3E-19 135.9 38.7 283 218-515 10-297 (299)
177 3azo_A Aminopeptidase; POP fam 99.8 4.8E-17 1.6E-21 168.1 24.4 244 262-511 18-321 (662)
178 2xdw_A Prolyl endopeptidase; a 99.8 4.3E-16 1.5E-20 162.0 31.5 247 266-515 123-416 (710)
179 3fvz_A Peptidyl-glycine alpha- 99.8 3.7E-16 1.3E-20 146.5 27.1 244 221-470 22-322 (329)
180 1qks_A Cytochrome CD1 nitrite 99.7 9.8E-15 3.3E-19 145.5 36.5 303 204-516 179-541 (567)
181 1rwi_B Serine/threonine-protei 99.7 1.1E-15 3.9E-20 138.9 26.4 240 269-516 25-267 (270)
182 3c5m_A Oligogalacturonate lyas 99.7 1.3E-16 4.4E-21 153.9 20.7 253 214-473 71-387 (396)
183 3e5z_A Putative gluconolactona 99.7 2.2E-15 7.4E-20 139.1 27.3 238 263-513 23-286 (296)
184 2bkl_A Prolyl endopeptidase; m 99.7 3.3E-16 1.1E-20 162.4 23.4 280 232-515 77-399 (695)
185 2xdw_A Prolyl endopeptidase; a 99.7 2E-15 6.9E-20 156.9 29.3 243 220-472 122-416 (710)
186 2bkl_A Prolyl endopeptidase; m 99.7 4.7E-16 1.6E-20 161.2 23.9 243 220-473 118-400 (695)
187 3no2_A Uncharacterized protein 99.7 1.7E-14 5.8E-19 131.0 29.4 247 233-488 4-272 (276)
188 2gop_A Trilobed protease; beta 99.7 2.5E-15 8.6E-20 142.1 24.1 222 268-514 15-292 (347)
189 2dg1_A DRP35, lactonase; beta 99.7 3.8E-14 1.3E-18 133.1 31.8 245 211-461 33-301 (333)
190 2qc5_A Streptogramin B lactona 99.7 3.2E-13 1.1E-17 124.6 37.2 279 219-512 16-299 (300)
191 3e5z_A Putative gluconolactona 99.7 1.6E-14 5.4E-19 133.3 28.2 246 212-473 17-289 (296)
192 3dsm_A Uncharacterized protein 99.7 9.6E-15 3.3E-19 136.7 27.0 259 242-515 15-303 (328)
193 3no2_A Uncharacterized protein 99.7 2E-14 6.8E-19 130.5 27.8 212 278-500 4-230 (276)
194 1rwi_B Serine/threonine-protei 99.7 1.2E-14 4.3E-19 132.0 25.0 239 224-473 25-267 (270)
195 1qks_A Cytochrome CD1 nitrite 99.7 1.1E-13 3.8E-18 137.9 32.8 273 232-514 165-478 (567)
196 2mad_H Methylamine dehydrogena 99.7 4.5E-13 1.5E-17 127.0 35.2 273 230-516 28-353 (373)
197 1yr2_A Prolyl oligopeptidase; 99.7 1.4E-14 4.9E-19 151.2 25.6 278 232-515 116-443 (741)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.3E-13 4.4E-18 128.3 28.0 244 266-514 16-300 (314)
199 2z2n_A Virginiamycin B lyase; 99.6 2.7E-12 9.3E-17 118.2 33.7 237 264-511 11-253 (299)
200 3sjl_D Methylamine dehydrogena 99.6 2.7E-13 9.3E-18 126.6 24.0 272 230-516 40-366 (386)
201 3sjl_D Methylamine dehydrogena 99.6 5.1E-13 1.8E-17 124.8 25.4 277 202-492 59-384 (386)
202 3dsm_A Uncharacterized protein 99.6 8.1E-13 2.8E-17 123.5 26.9 250 223-489 44-319 (328)
203 3g4e_A Regucalcin; six bladed 99.6 3.2E-12 1.1E-16 117.8 30.1 232 265-502 10-262 (297)
204 1yr2_A Prolyl oligopeptidase; 99.6 2.1E-13 7.3E-18 142.3 24.8 243 220-472 160-443 (741)
205 3hrp_A Uncharacterized protein 99.6 1.6E-12 5.5E-17 125.0 28.0 237 268-511 131-408 (409)
206 2mad_H Methylamine dehydrogena 99.6 2E-11 7E-16 115.6 34.5 259 205-477 50-357 (373)
207 3c75_H MADH, methylamine dehyd 99.5 1.7E-12 5.7E-17 123.7 25.0 271 233-516 83-405 (426)
208 3hrp_A Uncharacterized protein 99.5 8.9E-12 3E-16 119.8 30.1 238 222-468 130-408 (409)
209 2qc5_A Streptogramin B lactona 99.5 7E-11 2.4E-15 108.8 34.8 237 265-512 17-259 (300)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.6E-11 5.4E-16 114.1 29.9 243 219-470 14-299 (314)
211 3dr2_A Exported gluconolactona 99.5 5.6E-12 1.9E-16 116.6 25.1 233 263-508 40-302 (305)
212 3c75_H MADH, methylamine dehyd 99.5 8E-12 2.7E-16 119.0 25.3 261 203-477 100-409 (426)
213 2ghs_A AGR_C_1268P; regucalcin 99.5 5.3E-11 1.8E-15 111.0 30.4 225 270-503 51-293 (326)
214 1mda_H Methylamine dehydrogena 99.5 3E-12 1E-16 119.9 19.8 252 245-516 47-349 (368)
215 3iuj_A Prolyl endopeptidase; h 99.5 8.2E-12 2.8E-16 129.1 23.6 241 220-473 126-408 (693)
216 3iuj_A Prolyl endopeptidase; h 99.5 1.5E-11 5.1E-16 127.1 25.4 241 266-515 127-407 (693)
217 3g4e_A Regucalcin; six bladed 99.4 2.5E-10 8.4E-15 105.0 30.8 229 218-459 8-261 (297)
218 1xip_A Nucleoporin NUP159; bet 99.4 2.8E-12 9.6E-17 120.4 16.6 172 224-411 39-231 (388)
219 2qe8_A Uncharacterized protein 99.4 2.2E-11 7.4E-16 114.6 22.3 265 223-506 17-314 (343)
220 3dr2_A Exported gluconolactona 99.4 8E-11 2.7E-15 108.8 25.8 239 212-467 34-303 (305)
221 2ghs_A AGR_C_1268P; regucalcin 99.4 2.3E-09 7.8E-14 99.9 31.4 222 223-459 49-291 (326)
222 1xip_A Nucleoporin NUP159; bet 99.3 4.3E-11 1.5E-15 112.3 18.2 171 311-501 39-232 (388)
223 1mda_H Methylamine dehydrogena 99.3 2.3E-10 7.9E-15 107.1 18.5 261 205-491 49-366 (368)
224 3q7m_A Lipoprotein YFGL, BAMB; 99.3 5.4E-09 1.9E-13 99.6 28.4 259 233-510 102-375 (376)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.2 8.3E-09 2.8E-13 98.3 27.7 265 233-516 52-340 (376)
226 1npe_A Nidogen, entactin; glyc 99.2 3.2E-08 1.1E-12 89.3 29.9 251 234-493 1-262 (267)
227 1kb0_A Quinohemoprotein alcoho 99.2 2.1E-09 7.1E-14 110.1 23.5 258 233-500 127-538 (677)
228 2hz6_A Endoplasmic reticulum t 99.2 2.7E-13 9.3E-18 128.7 -5.7 256 233-512 8-278 (369)
229 1yiq_A Quinohemoprotein alcoho 99.2 4.1E-09 1.4E-13 108.2 24.9 261 233-502 120-538 (689)
230 1kb0_A Quinohemoprotein alcoho 99.2 2E-09 6.9E-14 110.2 22.3 271 234-516 77-510 (677)
231 2hz6_A Endoplasmic reticulum t 99.2 2.4E-11 8.4E-16 115.2 7.3 201 278-493 8-215 (369)
232 3hxj_A Pyrrolo-quinoline quino 99.2 2.1E-09 7E-14 100.4 19.6 283 203-514 41-325 (330)
233 1yiq_A Quinohemoprotein alcoho 99.2 2.5E-09 8.7E-14 109.7 21.8 274 234-517 70-509 (689)
234 1fwx_A Nitrous oxide reductase 99.2 6.5E-09 2.2E-13 101.3 22.8 221 278-501 100-406 (595)
235 2ece_A 462AA long hypothetical 99.2 2.9E-08 9.9E-13 93.4 26.4 224 232-458 93-399 (462)
236 2fp8_A Strictosidine synthase; 99.1 4.6E-08 1.6E-12 90.9 27.2 236 269-514 20-314 (322)
237 2ece_A 462AA long hypothetical 99.1 1.3E-07 4.4E-12 89.1 27.1 221 277-501 93-399 (462)
238 2qe8_A Uncharacterized protein 99.0 1.5E-08 5.1E-13 95.2 20.0 223 220-464 64-315 (343)
239 4a2l_A BT_4663, two-component 99.0 1.1E-06 3.7E-11 92.5 34.5 275 225-514 175-481 (795)
240 3hxj_A Pyrrolo-quinoline quino 99.0 3.6E-09 1.2E-13 98.8 13.9 256 228-511 25-282 (330)
241 1fwx_A Nitrous oxide reductase 99.0 8.5E-08 2.9E-12 93.5 23.0 236 232-472 99-433 (595)
242 2iwa_A Glutamine cyclotransfer 99.0 1.5E-07 5.1E-12 83.2 22.2 208 300-513 10-237 (266)
243 4a2l_A BT_4663, two-component 99.0 2.8E-06 9.5E-11 89.3 36.0 278 221-513 213-526 (795)
244 2p4o_A Hypothetical protein; p 99.0 5.1E-06 1.8E-10 76.3 32.8 234 258-501 23-277 (306)
245 2fp8_A Strictosidine synthase; 98.9 6.9E-07 2.4E-11 82.9 25.5 240 223-469 19-312 (322)
246 1npe_A Nidogen, entactin; glyc 98.9 4E-06 1.4E-10 75.4 29.2 205 222-432 35-245 (267)
247 2p4o_A Hypothetical protein; p 98.9 4.3E-06 1.5E-10 76.9 28.6 203 212-424 22-242 (306)
248 1kv9_A Type II quinohemoprotei 98.9 3.7E-07 1.3E-11 93.4 23.0 271 234-516 66-491 (668)
249 2iwa_A Glutamine cyclotransfer 98.8 3.2E-06 1.1E-10 74.7 24.6 201 213-424 10-237 (266)
250 2xbg_A YCF48-like protein; pho 98.8 3.2E-05 1.1E-09 71.7 32.8 276 222-511 35-320 (327)
251 1k3i_A Galactose oxidase precu 98.8 2.9E-07 1E-11 94.3 20.5 271 227-502 190-530 (656)
252 3nol_A Glutamine cyclotransfer 98.8 2.2E-06 7.5E-11 74.7 21.9 193 301-501 33-244 (262)
253 3tc9_A Hypothetical hydrolase; 98.8 2.2E-06 7.5E-11 82.6 24.5 239 269-512 138-429 (430)
254 3v9f_A Two-component system se 98.8 3.4E-05 1.1E-09 80.9 35.5 279 222-514 257-569 (781)
255 3v64_C Agrin; beta propeller, 98.8 3.9E-05 1.3E-09 71.7 32.1 243 223-478 34-283 (349)
256 3v9f_A Two-component system se 98.8 5.2E-05 1.8E-09 79.5 36.5 278 222-514 210-525 (781)
257 2xe4_A Oligopeptidase B; hydro 98.7 5.3E-06 1.8E-10 86.3 27.1 241 269-515 175-460 (751)
258 3v65_B Low-density lipoprotein 98.7 3.8E-05 1.3E-09 72.9 30.4 251 226-489 80-337 (386)
259 1kv9_A Type II quinohemoprotei 98.7 4.7E-06 1.6E-10 85.3 25.3 259 234-501 117-520 (668)
260 1ijq_A LDL receptor, low-densi 98.7 0.00016 5.3E-09 66.6 33.2 231 236-478 3-246 (316)
261 3p5b_L Low density lipoprotein 98.7 0.00016 5.4E-09 68.9 33.7 240 236-487 85-337 (400)
262 1w6s_A Methanol dehydrogenase 98.7 8.8E-06 3E-10 81.4 25.8 274 234-517 62-507 (599)
263 1w6s_A Methanol dehydrogenase 98.7 1.4E-05 4.8E-10 80.0 26.9 264 228-501 111-535 (599)
264 3qqz_A Putative uncharacterize 98.6 4.8E-05 1.6E-09 66.8 26.8 201 216-421 20-250 (255)
265 3nol_A Glutamine cyclotransfer 98.6 4.6E-06 1.6E-10 72.7 20.0 190 213-414 32-245 (262)
266 2ad6_A Methanol dehydrogenase 98.6 2.2E-05 7.5E-10 78.6 27.9 260 234-502 115-527 (571)
267 2ad6_A Methanol dehydrogenase 98.6 4.8E-06 1.6E-10 83.4 23.0 271 234-516 62-497 (571)
268 2xe4_A Oligopeptidase B; hydro 98.6 6.5E-06 2.2E-10 85.6 24.8 195 220-422 170-398 (751)
269 3mbr_X Glutamine cyclotransfer 98.6 5.1E-05 1.7E-09 65.6 25.5 194 300-501 10-223 (243)
270 4hw6_A Hypothetical protein, I 98.6 3.5E-05 1.2E-09 74.2 26.9 237 269-512 140-432 (433)
271 1flg_A Protein (quinoprotein e 98.6 5.5E-05 1.9E-09 75.8 28.5 258 234-501 117-548 (582)
272 1flg_A Protein (quinoprotein e 98.6 5.8E-05 2E-09 75.6 28.5 56 460-517 465-520 (582)
273 3nok_A Glutaminyl cyclase; bet 98.5 4.2E-05 1.4E-09 66.7 23.1 192 300-501 44-254 (268)
274 3p5b_L Low density lipoprotein 98.5 0.00024 8.2E-09 67.7 30.7 206 219-425 108-321 (400)
275 3v64_C Agrin; beta propeller, 98.5 0.0002 7E-09 66.8 29.8 200 222-425 72-276 (349)
276 3qqz_A Putative uncharacterize 98.5 0.00011 3.7E-09 64.5 25.4 204 304-512 21-252 (255)
277 3kya_A Putative phosphatase; s 98.5 7.4E-05 2.5E-09 72.1 26.2 241 269-514 140-476 (496)
278 3v65_B Low-density lipoprotein 98.5 0.00016 5.3E-09 68.7 28.2 201 221-425 114-319 (386)
279 1k3i_A Galactose oxidase precu 98.5 2.7E-06 9.2E-11 87.2 16.9 240 272-514 190-498 (656)
280 1ijq_A LDL receptor, low-densi 98.5 0.00047 1.6E-08 63.4 30.0 202 221-425 28-239 (316)
281 3tc9_A Hypothetical hydrolase; 98.5 3.4E-05 1.2E-09 74.3 22.6 153 224-384 138-301 (430)
282 3sov_A LRP-6, low-density lipo 98.4 0.00064 2.2E-08 62.4 29.1 226 243-478 12-246 (318)
283 2p9w_A MAL S 1 allergenic prot 98.4 0.0006 2.1E-08 61.6 26.9 207 218-429 8-269 (334)
284 3nok_A Glutaminyl cyclase; bet 98.3 3.5E-05 1.2E-09 67.2 17.5 152 352-515 53-212 (268)
285 3m0c_C LDL receptor, low-densi 98.3 0.0016 5.3E-08 67.4 32.5 224 244-478 404-640 (791)
286 4hw6_A Hypothetical protein, I 98.3 0.00029 9.8E-09 67.8 25.3 194 223-423 139-373 (433)
287 3mbr_X Glutamine cyclotransfer 98.3 0.00011 3.8E-09 63.5 19.5 155 351-515 18-181 (243)
288 3sov_A LRP-6, low-density lipo 98.2 0.001 3.6E-08 60.9 26.2 200 223-425 35-239 (318)
289 2xbg_A YCF48-like protein; pho 98.2 0.0017 5.7E-08 60.0 27.7 231 222-468 79-320 (327)
290 2ism_A Putative oxidoreductase 98.2 0.0015 5E-08 61.0 27.5 202 217-424 25-297 (352)
291 3s94_A LRP-6, low-density lipo 98.2 0.0073 2.5E-07 60.9 34.7 203 220-425 37-244 (619)
292 3a9g_A Putative uncharacterize 98.2 0.0026 8.9E-08 59.3 28.2 202 218-424 24-296 (354)
293 3m0c_C LDL receptor, low-densi 98.2 0.002 6.9E-08 66.6 29.5 204 221-425 422-633 (791)
294 2p9w_A MAL S 1 allergenic prot 98.2 0.0013 4.3E-08 59.5 24.1 207 263-471 8-266 (334)
295 2ism_A Putative oxidoreductase 98.2 0.002 6.9E-08 60.1 26.7 225 268-501 31-333 (352)
296 4a0p_A LRP6, LRP-6, low-densit 98.2 0.009 3.1E-07 60.2 34.2 231 236-477 8-244 (628)
297 3kya_A Putative phosphatase; s 98.1 0.00038 1.3E-08 67.2 21.8 195 224-422 140-408 (496)
298 3ei3_A DNA damage-binding prot 98.1 0.0064 2.2E-07 65.7 33.1 282 222-515 553-915 (1158)
299 3amr_A 3-phytase; beta-propell 98.1 0.0011 3.6E-08 60.5 23.0 197 278-478 39-272 (355)
300 2xtc_A F-box-like/WD repeat-co 98.1 2.1E-06 7E-11 59.7 3.9 36 13-48 2-37 (90)
301 3a9g_A Putative uncharacterize 98.1 0.0069 2.4E-07 56.4 28.5 231 267-501 28-330 (354)
302 1n7d_A LDL receptor, low-densi 98.1 3.6E-05 1.2E-09 79.0 13.6 235 243-489 385-633 (699)
303 3s94_A LRP-6, low-density lipo 98.0 0.015 5.2E-07 58.6 35.3 284 223-514 84-424 (619)
304 2vpj_A Kelch-like protein 12; 98.0 0.00097 3.3E-08 60.7 21.0 226 278-514 14-279 (301)
305 2xn4_A Kelch-like protein 2; s 98.0 0.0022 7.5E-08 58.4 22.5 225 279-514 16-277 (302)
306 2vpj_A Kelch-like protein 12; 97.9 0.0012 4E-08 60.2 20.2 230 233-472 14-280 (301)
307 2xzh_A Clathrin heavy chain 1; 97.9 0.01 3.5E-07 53.1 31.1 253 243-511 48-330 (365)
308 1uuj_A Platelet-activating fac 97.9 4.6E-06 1.6E-10 57.5 2.5 56 16-72 10-65 (88)
309 3s25_A Hypothetical 7-bladed b 97.9 0.0097 3.3E-07 53.9 24.3 213 273-511 58-291 (302)
310 3ii7_A Kelch-like protein 7; p 97.9 0.0026 8.7E-08 58.1 20.9 224 280-514 13-273 (306)
311 2xn4_A Kelch-like protein 2; s 97.8 0.0042 1.4E-07 56.5 22.2 229 234-473 16-279 (302)
312 3ii7_A Kelch-like protein 7; p 97.8 0.0086 2.9E-07 54.5 24.0 227 235-472 13-274 (306)
313 1n7d_A LDL receptor, low-densi 97.8 0.00019 6.6E-09 73.6 13.7 202 223-425 406-615 (699)
314 3sre_A PON1, serum paraoxonase 97.8 0.0055 1.9E-07 56.6 21.6 177 287-468 81-296 (355)
315 4a0p_A LRP6, LRP-6, low-densit 97.8 0.042 1.5E-06 55.4 37.4 196 222-422 36-235 (628)
316 2g8s_A Glucose/sorbosone dehyd 97.8 0.0068 2.3E-07 56.5 22.6 148 221-372 16-215 (353)
317 1bpo_A Protein (clathrin); cla 97.8 0.027 9.2E-07 52.6 32.8 255 243-511 47-329 (494)
318 1zgk_A Kelch-like ECH-associat 97.7 0.0032 1.1E-07 57.5 19.4 226 278-514 24-288 (308)
319 3amr_A 3-phytase; beta-propell 97.7 0.0056 1.9E-07 55.8 20.2 183 321-512 40-262 (355)
320 4asc_A Kelch repeat and BTB do 97.7 0.015 5.2E-07 53.1 23.5 224 281-514 7-278 (315)
321 2g8s_A Glucose/sorbosone dehyd 97.7 0.019 6.5E-07 53.4 23.9 239 268-511 18-350 (353)
322 3ott_A Two-component system se 97.7 0.079 2.7E-06 55.1 33.3 264 222-509 21-303 (758)
323 3sre_A PON1, serum paraoxonase 97.6 0.034 1.2E-06 51.3 24.1 193 216-412 43-285 (355)
324 4asc_A Kelch repeat and BTB do 97.6 0.032 1.1E-06 50.9 23.8 227 236-474 7-281 (315)
325 1zgk_A Kelch-like ECH-associat 97.5 0.018 6.3E-07 52.4 20.9 229 233-472 24-289 (308)
326 2uvk_A YJHT; unknown function, 97.4 0.0084 2.9E-07 56.0 18.2 228 278-515 19-344 (357)
327 2woz_A Kelch repeat and BTB do 97.4 0.04 1.4E-06 50.3 22.4 229 236-476 18-293 (318)
328 2woz_A Kelch repeat and BTB do 97.4 0.059 2E-06 49.2 22.7 223 281-514 18-288 (318)
329 3ei3_A DNA damage-binding prot 97.3 0.3 1E-05 52.9 35.4 193 224-424 515-724 (1158)
330 1cru_A Protein (soluble quinop 97.2 0.16 5.5E-06 48.9 29.5 153 217-371 21-245 (454)
331 3das_A Putative oxidoreductase 97.2 0.13 4.5E-06 47.2 26.6 154 213-370 22-218 (347)
332 1cru_A Protein (soluble quinop 97.2 0.2 6.7E-06 48.3 31.0 105 268-372 27-162 (454)
333 2uvk_A YJHT; unknown function, 97.1 0.046 1.6E-06 50.9 19.5 238 233-478 19-350 (357)
334 1xi4_A Clathrin heavy chain; a 97.0 0.033 1.1E-06 60.0 19.0 234 243-489 47-308 (1630)
335 1tl2_A L10, protein (tachylect 96.9 0.01 3.4E-07 49.9 11.2 132 279-419 4-158 (236)
336 3das_A Putative oxidoreductase 96.9 0.25 8.6E-06 45.3 33.6 234 263-501 27-326 (347)
337 1tl2_A L10, protein (tachylect 96.9 0.052 1.8E-06 45.7 15.3 143 354-506 41-203 (236)
338 2be1_A Serine/threonine-protei 96.8 0.067 2.3E-06 48.9 16.9 192 279-475 10-236 (339)
339 3pbp_A Nucleoporin NUP82; beta 96.8 0.11 3.9E-06 48.4 18.1 139 278-420 31-208 (452)
340 3pbp_A Nucleoporin NUP82; beta 96.8 0.1 3.4E-06 48.8 17.7 111 355-466 67-208 (452)
341 3s25_A Hypothetical 7-bladed b 96.8 0.19 6.6E-06 45.3 19.6 174 318-513 22-216 (302)
342 2zwa_A Leucine carboxyl methyl 96.7 0.23 7.8E-06 50.9 21.7 197 277-474 396-639 (695)
343 3sbq_A Nitrous-oxide reductase 96.3 0.91 3.1E-05 44.0 26.1 233 236-470 72-408 (638)
344 2xzh_A Clathrin heavy chain 1; 95.9 0.95 3.3E-05 40.7 30.8 194 227-431 71-296 (365)
345 3b7f_A Glycosyl hydrolase, BNR 95.8 1.2 4.2E-05 41.7 28.1 181 235-421 23-259 (394)
346 3ott_A Two-component system se 95.8 2.1 7.3E-05 44.2 36.1 273 222-511 145-446 (758)
347 1bpo_A Protein (clathrin); cla 95.5 1.7 5.8E-05 40.8 29.4 233 227-471 70-332 (494)
348 2zwa_A Leucine carboxyl methyl 95.5 0.64 2.2E-05 47.6 17.9 194 319-514 396-636 (695)
349 3qhy_B Beta-lactamase inhibito 95.1 1.7 5.7E-05 38.6 17.8 221 269-515 25-248 (282)
350 1xi4_A Clathrin heavy chain; a 95.0 1.7 5.7E-05 47.4 19.1 217 288-517 47-293 (1630)
351 3qhy_B Beta-lactamase inhibito 94.5 2.4 8.1E-05 37.6 17.0 238 224-493 25-265 (282)
352 2wg3_C Hedgehog-interacting pr 94.4 3.8 0.00013 39.3 27.7 122 221-342 12-186 (463)
353 4hvt_A Ritya.17583.B, post-pro 93.7 6.8 0.00023 39.9 25.6 238 271-512 132-429 (711)
354 3sbq_A Nitrous-oxide reductase 93.4 6.2 0.00021 38.4 22.8 229 282-513 73-408 (638)
355 3b7f_A Glycosyl hydrolase, BNR 92.1 7.7 0.00026 36.2 28.1 263 222-490 54-391 (394)
356 2be1_A Serine/threonine-protei 92.1 0.54 1.9E-05 42.9 8.6 113 366-479 11-139 (339)
357 2d68_A FOP, FGFR1OP; alpha hel 90.7 0.26 8.9E-06 33.7 3.7 30 17-46 19-48 (82)
358 3uc1_A DNA gyrase subunit A; D 90.0 11 0.00037 34.2 22.7 198 222-423 41-278 (327)
359 3no0_A DNA gyrase subunit A; D 87.8 14 0.00047 32.5 20.4 192 223-422 24-244 (276)
360 3no0_A DNA gyrase subunit A; D 86.3 17 0.00057 32.0 18.8 194 268-469 24-245 (276)
361 1suu_A DNA gyrase subunit A; t 81.7 29 0.00098 31.1 27.1 190 277-469 6-230 (312)
362 3kci_A Probable E3 ubiquitin-p 81.0 35 0.0012 31.6 27.9 265 236-513 12-345 (389)
363 4gq2_M Nucleoporin NUP120; bet 81.0 17 0.0006 38.5 13.3 38 268-305 236-273 (950)
364 4gq2_M Nucleoporin NUP120; bet 80.8 14 0.00048 39.2 12.4 33 446-478 242-274 (950)
365 3l6v_A GYRA, DNA gyrase subuni 79.2 39 0.0013 31.1 25.9 146 275-423 3-179 (370)
366 1wp5_A Topoisomerase IV; broke 78.2 38 0.0013 30.4 21.9 188 232-423 3-224 (323)
367 1zi0_A DNA gyrase subunit A; b 76.2 42 0.0014 29.9 25.8 229 277-510 1-274 (307)
368 1oyi_A Double-stranded RNA-bin 75.8 1.2 4.1E-05 30.5 1.7 34 12-47 11-44 (82)
369 4gco_A Protein STI-1; structur 71.0 26 0.00087 26.0 8.6 104 22-130 19-124 (126)
370 1wp5_A Topoisomerase IV; broke 69.4 64 0.0022 29.0 23.8 230 277-511 3-275 (323)
371 2wg3_C Hedgehog-interacting pr 69.1 81 0.0028 30.0 30.5 106 268-373 14-158 (463)
372 4fhn_B Nucleoporin NUP120; pro 68.6 14 0.00047 40.2 8.8 37 269-305 239-275 (1139)
373 3l6v_A GYRA, DNA gyrase subuni 63.0 93 0.0032 28.5 25.6 190 231-423 4-264 (370)
374 1suu_A DNA gyrase subunit A; t 62.6 85 0.0029 28.0 26.1 188 232-423 6-230 (312)
375 2lni_A Stress-induced-phosphop 62.5 41 0.0014 24.3 10.9 103 8-115 8-112 (133)
376 3zwu_A Alkaline phosphatase PH 62.3 28 0.00096 34.4 8.8 59 269-327 477-548 (592)
377 1zvt_A Topoisomerase IV subuni 61.8 78 0.0027 27.2 14.4 112 355-469 34-162 (256)
378 2j4b_A TAF5, transcription ini 61.6 12 0.0004 28.8 4.7 51 81-131 29-79 (138)
379 3kci_A Probable E3 ubiquitin-p 61.1 1E+02 0.0035 28.4 29.7 182 236-423 64-292 (389)
380 3uc1_A DNA gyrase subunit A; D 56.1 1.1E+02 0.0039 27.4 22.9 228 279-510 3-276 (327)
381 4fhn_B Nucleoporin NUP120; pro 56.1 25 0.00084 38.3 7.9 31 448-478 246-276 (1139)
382 2nxp_A Transcription initiatio 56.0 14 0.00049 29.0 4.5 52 80-131 47-99 (156)
383 4a9v_A PHOX; hydrolase, beta-p 54.3 68 0.0023 31.4 9.7 61 268-328 476-549 (592)
384 1zvt_A Topoisomerase IV subuni 54.1 1.1E+02 0.0036 26.4 14.3 141 281-424 4-163 (256)
385 2xz2_A CSTF-50, isoform B; RNA 52.8 11 0.00038 24.2 2.6 52 7-59 6-58 (66)
386 3f7f_A Nucleoporin NUP120; nuc 51.8 25 0.00085 35.5 6.4 37 269-307 223-259 (729)
387 4hvt_A Ritya.17583.B, post-pro 51.2 2.1E+02 0.0072 29.0 25.0 237 225-469 131-429 (711)
388 3mkr_A Coatomer subunit epsilo 50.9 1.1E+02 0.0038 26.6 10.3 89 16-114 64-157 (291)
389 1kdl_A YOPD protein; yersinia, 50.5 10 0.00034 18.9 1.7 14 17-30 5-18 (26)
390 3f7f_A Nucleoporin NUP120; nuc 48.7 27 0.00091 35.3 6.1 31 449-479 229-259 (729)
391 2j49_A Transcription initiatio 47.4 20 0.00069 27.9 4.0 34 79-113 29-62 (148)
392 3q6k_A 43.2 kDa salivary prote 47.1 1.7E+02 0.006 26.8 24.3 187 290-501 124-342 (381)
393 2xzm_T RPS19E; ribosome, trans 46.7 12 0.0004 29.1 2.5 30 1-31 1-30 (155)
394 2cn3_A Xyloglucanase, beta-1,4 43.7 2.8E+02 0.0095 28.2 27.3 104 269-373 24-152 (737)
395 3zwu_A Alkaline phosphatase PH 43.3 88 0.003 30.9 8.8 59 312-370 478-547 (592)
396 3u4t_A TPR repeat-containing p 42.6 78 0.0027 26.7 7.8 97 17-115 4-102 (272)
397 2k9m_A RNA polymerase sigma fa 42.1 21 0.00071 27.1 3.3 28 17-44 22-50 (130)
398 4a9v_A PHOX; hydrolase, beta-p 41.2 1.7E+02 0.0057 28.7 10.1 61 311-371 477-548 (592)
399 4a18_Q RPL36, 60S ribosomal pr 40.9 11 0.00038 26.7 1.5 31 85-115 49-82 (104)
400 3on4_A Transcriptional regulat 40.2 35 0.0012 27.2 4.8 63 9-71 5-73 (191)
401 1zk8_A Transcriptional regulat 39.2 18 0.00061 28.9 2.8 62 8-69 2-69 (183)
402 3qou_A Protein YBBN; thioredox 38.6 83 0.0028 27.3 7.4 107 22-133 123-231 (287)
403 1elw_A TPR1-domain of HOP; HOP 37.9 98 0.0034 21.4 10.3 93 18-115 6-100 (118)
404 2qfc_A PLCR protein; TPR, HTH, 37.2 1.5E+02 0.005 25.7 8.8 98 17-114 76-182 (293)
405 1zi0_A DNA gyrase subunit A; b 36.7 2.2E+02 0.0076 25.1 25.8 188 232-422 1-224 (307)
406 3q6k_A 43.2 kDa salivary prote 36.2 2.6E+02 0.0088 25.7 22.0 164 245-410 124-340 (381)
407 1am7_A Lysozyme; glycosidase, 36.0 28 0.00095 27.3 3.2 55 63-117 73-127 (158)
408 3izc_k 60S ribosomal protein R 34.5 7.1 0.00024 27.5 -0.3 46 85-130 48-93 (100)
409 3mez_B Mannose-specific lectin 33.8 1.3E+02 0.0046 21.7 10.1 15 397-411 59-73 (113)
410 1sqj_A OXG-RCBH, oligoxylogluc 32.9 4.2E+02 0.014 27.2 26.6 62 225-288 123-190 (789)
411 2jt1_A PEFI protein; solution 32.7 28 0.00094 23.5 2.4 31 16-46 6-37 (77)
412 2lnb_A Z-DNA-binding protein 1 32.2 22 0.00075 23.8 1.7 38 5-45 9-46 (80)
413 1q1v_A DEK protein; winged-hel 31.5 68 0.0023 21.1 4.0 38 12-49 10-53 (70)
414 3bqo_A Telomeric repeat-bindin 31.1 70 0.0024 26.1 4.7 68 66-133 96-163 (211)
415 3him_A Probable transcriptiona 31.0 35 0.0012 27.7 3.4 67 7-73 9-81 (211)
416 2xns_C RGS14, regulator of G-p 30.9 55 0.0019 18.1 2.8 25 4-28 14-38 (40)
417 3iz5_k 60S ribosomal protein L 30.6 7.7 0.00027 28.0 -0.7 50 83-132 49-98 (112)
418 3ct5_A Morphogenesis protein 1 29.7 32 0.0011 27.1 2.7 31 15-45 13-48 (159)
419 3ppb_A Putative TETR family tr 29.6 34 0.0011 27.4 3.0 66 7-72 2-73 (195)
420 3he0_A Transcriptional regulat 29.3 32 0.0011 27.6 2.8 68 5-72 2-75 (196)
421 2jvf_A De novo protein M7; tet 29.1 20 0.00067 23.1 1.0 20 15-34 61-80 (96)
422 4h3o_A Lectin; cadmium, plant 29.0 1.6E+02 0.0054 21.0 10.5 14 397-410 53-66 (105)
423 3urz_A Uncharacterized protein 28.5 2.3E+02 0.0079 22.7 8.8 109 16-129 4-130 (208)
424 2igp_A Retinoblastoma-associat 27.6 44 0.0015 24.8 2.9 28 7-34 4-34 (120)
425 3upv_A Heat shock protein STI1 27.5 1.7E+02 0.0057 20.8 8.7 92 18-114 6-99 (126)
426 4gof_A Small glutamine-rich te 26.8 34 0.0012 20.9 1.8 15 16-30 2-16 (52)
427 1hxi_A PEX5, peroxisome target 26.6 1.8E+02 0.0061 20.9 7.1 92 18-114 19-112 (121)
428 4ga2_A E3 SUMO-protein ligase 26.4 1.9E+02 0.0065 21.7 6.8 71 58-133 41-111 (150)
429 1olz_A Semaphorin 4D; developm 26.2 4.5E+02 0.015 26.3 10.8 68 224-293 398-477 (663)
430 4gcn_A Protein STI-1; structur 26.1 1.5E+02 0.005 21.6 5.9 89 25-115 17-111 (127)
431 2lxb_A Small glutamine-rich te 25.4 52 0.0018 21.9 2.6 17 14-30 5-21 (74)
432 3bu8_A Telomeric repeat-bindin 25.4 1.9E+02 0.0066 23.9 6.4 59 75-133 102-160 (235)
433 2vyi_A SGTA protein; chaperone 25.3 1.8E+02 0.006 20.4 8.9 92 19-115 15-108 (131)
434 3ljl_A Transcriptional regulat 25.2 38 0.0013 26.2 2.4 46 15-60 15-66 (156)
435 1zvu_A Topoisomerase IV subuni 24.2 5.6E+02 0.019 25.8 12.6 148 363-512 470-632 (716)
436 1v32_A AT5G08430, hypothetical 24.0 34 0.0012 24.5 1.6 23 12-34 33-55 (101)
437 3sz7_A HSC70 cochaperone (SGT) 23.8 2.4E+02 0.0082 21.3 9.0 93 18-115 13-107 (164)
438 2rae_A Transcriptional regulat 23.5 45 0.0015 27.1 2.7 39 8-46 11-50 (207)
439 3al9_A Plexin-A2; beta-propell 22.9 3.2E+02 0.011 26.5 8.8 72 222-293 399-476 (539)
440 1rij_A E6APN1 peptide; Trp-CAG 22.9 51 0.0017 15.8 1.6 13 20-32 3-15 (26)
441 3mkr_A Coatomer subunit epsilo 22.7 2.7E+02 0.0093 24.0 7.9 91 18-116 102-195 (291)
442 4asv_A Small glutamine-rich te 22.6 60 0.0021 22.6 2.5 18 13-30 16-33 (92)
443 2hxo_A Putative TETR-family tr 22.3 65 0.0022 27.2 3.5 52 9-60 11-68 (237)
444 1x2l_A CUT-like 2, homeobox pr 22.3 1.2E+02 0.0039 21.7 4.1 29 8-36 11-39 (101)
445 4gyw_A UDP-N-acetylglucosamine 22.3 3.9E+02 0.013 27.1 9.8 56 18-73 10-68 (723)
446 4f3v_A ESX-1 secretion system 22.2 3.5E+02 0.012 23.5 8.2 95 14-114 99-198 (282)
447 3jsj_A Putative TETR-family tr 22.1 48 0.0016 26.4 2.5 65 7-71 2-71 (190)
448 2r5s_A Uncharacterized protein 21.8 2E+02 0.0069 22.2 6.3 111 17-132 7-119 (176)
449 1vk8_A Hypothetical protein TM 21.6 12 0.00043 27.0 -1.0 33 38-74 40-72 (106)
450 3k2z_A LEXA repressor; winged 21.6 56 0.0019 26.7 2.8 32 15-46 6-37 (196)
451 3s5r_A Transcriptional regulat 21.2 1E+02 0.0035 24.9 4.6 63 12-74 8-76 (216)
452 3u3w_A Transcriptional activat 21.1 3.9E+02 0.013 22.8 9.4 97 19-115 78-183 (293)
453 3ma5_A Tetratricopeptide repea 20.9 1.5E+02 0.0052 20.2 4.8 51 59-114 18-68 (100)
454 3on2_A Probable transcriptiona 20.8 98 0.0034 24.5 4.3 55 12-66 10-70 (199)
455 1xmk_A Double-stranded RNA-spe 20.5 37 0.0013 23.0 1.2 33 14-47 7-39 (79)
456 2ho1_A Type 4 fimbrial biogene 20.5 3.5E+02 0.012 22.0 9.4 87 24-115 45-133 (252)
457 2q24_A Putative TETR family tr 20.3 46 0.0016 26.7 2.1 56 11-66 12-72 (194)
458 2dba_A Smooth muscle cell asso 20.3 2.5E+02 0.0085 20.3 11.0 96 15-115 27-127 (148)
459 2dg7_A Putative transcriptiona 20.3 67 0.0023 25.7 3.1 39 9-47 2-41 (195)
460 2o7t_A Transcriptional regulat 20.0 69 0.0024 25.7 3.1 48 14-61 8-61 (199)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-54 Score=420.27 Aligned_cols=287 Identities=22% Similarity=0.384 Sum_probs=258.4
Q ss_pred EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEE
Q 042434 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 294 (517)
...+.+|.++|++++|+|++.+|++|+.||+|+|||+.++. ...++.+|.+.|.+++|+|++++|++|+.||+|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~---~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD---FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC---CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 34578999999999999999999999999999999997664 446789999999999999999999999999999999
Q ss_pred ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEccCCCEEEEEeC
Q 042434 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTPDGENLISVLS 373 (517)
Q Consensus 295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 373 (517)
|+.+++++..+.+|...|.+++|+|+++++++|+.|+. |.+||.... .+..+.. +...|.++.++|++.++++++.
T Consensus 178 d~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~--i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~g~~l~s~s~ 254 (410)
T 1vyh_C 178 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT--IKMWEVQTGYCVKTFTG-HREWVRMVRPNQDGTLIASCSN 254 (410)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSE--EEEEETTTCCEEEEEEC-CSSCEEEEEECTTSSEEEEEET
T ss_pred eCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe--EEEEECCCCcEEEEEeC-CCccEEEEEECCCCCEEEEEcC
Confidence 99999999999999999999999999999999999999 888898754 4445544 4468999999999999999999
Q ss_pred CCcEEEEECCCce--EEeeccCCCeeEEEEcCC--------------------CCEEEEEeCCCeEEEEEcCCCCccceE
Q 042434 374 DKDIRILNLGTYA--ERVISEEHPITSLSVSVD--------------------CKNFIVNLNSQEIHMWDVAGKWEKPFK 431 (517)
Q Consensus 374 dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~d~~i~~~d~~~~~~~~~~ 431 (517)
|+.|++||+.+.. .....+...+.+++|+|+ +.++++++.|+.|++||++++ .....
T Consensus 255 D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~ 333 (410)
T 1vyh_C 255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMT 333 (410)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEE
T ss_pred CCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEE
Confidence 9999999998876 455678889999999996 678999999999999999887 67777
Q ss_pred EeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 432 YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 432 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
+.+|... +..+.++|+|++|++|+.||.|++||+.+++++.++.+|...|++++|+|++ .+|+||+.||+|++|++
T Consensus 334 ~~~h~~~---v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 334 LVGHDNW---VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECCSSC---EEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS-SCEEEEETTSEEEEEC-
T ss_pred EECCCCc---EEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeC
Confidence 8888765 5566679999999999999999999999999999999999999999999999 69999999999999996
Q ss_pred C
Q 042434 512 C 512 (517)
Q Consensus 512 ~ 512 (517)
+
T Consensus 410 r 410 (410)
T 1vyh_C 410 R 410 (410)
T ss_dssp -
T ss_pred C
Confidence 3
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-46 Score=352.59 Aligned_cols=293 Identities=23% Similarity=0.297 Sum_probs=258.1
Q ss_pred cccEEEeccccCcEEEEEECCC----CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC
Q 042434 212 TETVQILTEHKNEVWFVQFSNN----GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN 287 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 287 (517)
+...+.+.+|.+.|++++|+|+ +.+|++|+.|++|+||++..+ .......+.+|...|.+++|+|++.++++++.
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~-~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~ 100 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE-RLDLQWSLEGHQLGVVSVDISHTLPIAASSSL 100 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC-CeeeeeeeccCCCCEEEEEECCCCCEEEEEeC
Confidence 3456677899999999999985 679999999999999999754 33455678999999999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCE
Q 042434 288 AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGEN 367 (517)
Q Consensus 288 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 367 (517)
|++|++||+.+++.+..+..+...+.+++|+|++++|++++.|+. +.+|+............+...+.+++|+|++++
T Consensus 101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~--v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGK--VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY 178 (321)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSE--EEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCc--EEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence 999999999999999999999999999999999999999999999 788888754443333344458999999999999
Q ss_pred EEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEee
Q 042434 368 LISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSC 445 (517)
Q Consensus 368 l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 445 (517)
+++++.||.|++||+++++ .....+..+|.+++|+|+++++++++.|+.|++||++.. .....+.+|... +..+
T Consensus 179 lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~---v~~~ 254 (321)
T 3ow8_A 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASW---VLNV 254 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC-CEEEEECCCSSC---EEEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCc---eEEE
Confidence 9999999999999999887 344567789999999999999999999999999999876 566777777765 5566
Q ss_pred cCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 446 FGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 446 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
.|+|++.+|++|+.||+|++||+.+++++.++.+|.+.|.+++|+|++ ..|++++.||+|++||..
T Consensus 255 ~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 255 AFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG-SKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTCCEEEEECC
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEeCC
Confidence 679999999999999999999999999999999999999999999999 799999999999999964
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.5e-45 Score=349.40 Aligned_cols=292 Identities=18% Similarity=0.333 Sum_probs=255.4
Q ss_pred CCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434 210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE 289 (517)
Q Consensus 210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 289 (517)
.+.....++.+|.+.|++++|+|++++|++|+.||+|++||..++ .....+..|...|.+++|+|++++|++|+.|+
T Consensus 43 ~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 119 (340)
T 1got_B 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT---NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC---CEEEEEECSSSCEEEEEECTTSSEEEEEETTC
T ss_pred ccchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC---CcceEeecCCccEEEEEECCCCCEEEEEeCCC
Confidence 345678899999999999999999999999999999999999766 34567788999999999999999999999999
Q ss_pred eEEEEECCCC----cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCC
Q 042434 290 VLKLWDVETG----ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG 365 (517)
Q Consensus 290 ~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 365 (517)
.|++|++.++ .....+.+|...|.++.|++++. +++++.|+. |.+||............+.+.|.+++|+|++
T Consensus 120 ~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~--i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTT--CALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp EEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSC--EEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred eEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCc--EEEEECCCCcEEEEEcCCCCceEEEEECCCC
Confidence 9999999875 35567789999999999998775 899999999 8889988655544444555789999999999
Q ss_pred CEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEE
Q 042434 366 ENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIR 443 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~ 443 (517)
+++++|+.|+.|++||++++. .....|...|.+++|+|+++++++++.|+.|++||++.. .....+. +......+.
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~-~~~~~~~v~ 274 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD-QELMTYS-HDNIICGIT 274 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEEC-CTTCCSCEE
T ss_pred CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-cEEEEEc-cCCcccceE
Confidence 999999999999999998876 445568889999999999999999999999999999876 3333333 322223466
Q ss_pred eecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 444 SCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 444 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
++.|+|+|+++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++ .+|+||+.||+|++||
T Consensus 275 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred EEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCC-CEEEEEcCCccEEecC
Confidence 77789999999999999999999999999999999999999999999999 7999999999999997
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.4e-45 Score=340.59 Aligned_cols=293 Identities=17% Similarity=0.240 Sum_probs=254.1
Q ss_pred cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL 291 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 291 (517)
.+..+++.+|.+.|++++|+|++++|++|+.||+|++||+.++ .....+..|..+|.+++|+|++++|++|+.|++|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence 3567789999999999999999999999999999999999765 4567788999999999999999999999999999
Q ss_pred EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEcc-CCCEEE
Q 042434 292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTP-DGENLI 369 (517)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~ 369 (517)
++||+.+++++..+.+|...|.+++|+|++.++++|+.|++ |.+||.... ........+...|.+++|+| ++..++
T Consensus 80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~--v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT--VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (304)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSC--EEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCe--EEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE
Confidence 99999999999999999999999999999999999999999 777787643 44444445557899999999 678999
Q ss_pred EEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEe
Q 042434 370 SVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSV--DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS 444 (517)
Q Consensus 370 ~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~ 444 (517)
+|+.|+.|++||+++.. .....+...+..+.++| ++.++++++.|+.|++||+++. .....+.+|... +..
T Consensus 158 sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~h~~~---v~~ 233 (304)
T 2ynn_A 158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSN---VSF 233 (304)
T ss_dssp EEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-EEEEEEECCSSC---EEE
T ss_pred EEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-ccceeeCCCCCC---EEE
Confidence 99999999999998765 22334557789999987 7789999999999999999887 677788888776 556
Q ss_pred ecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCc-EEEEeeCCCcEEEeCCCCC
Q 042434 445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPK-MLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~l~s~~~dg~v~iw~~~~~ 514 (517)
+.++|++.+|++|+.||+|++||..+++++.++..|...+.+++|+|++.. ++++|++|| +.+|++...
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence 667999999999999999999999999999999999999999999998844 477776665 677877653
No 5
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-44 Score=339.05 Aligned_cols=294 Identities=29% Similarity=0.481 Sum_probs=259.1
Q ss_pred cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL 291 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 291 (517)
......+.+|.+.|++++|+|++++|++|+.||.|++|+..++ .....+.+|...|.+++|+|++++|++++.||.|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc---ccchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence 4567788999999999999999999999999999999999765 4456788999999999999999999999999999
Q ss_pred EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434 292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV 371 (517)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 371 (517)
++||+.+++++..+..|...|.+++|+|+++++++|+.|+. |.+||............+...|.+++|+|++++++++
T Consensus 90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES--VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSC--EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCc--EEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 99999999999999999999999999999999999999999 8888987654443344455689999999999999999
Q ss_pred eCCCcEEEEECCCceE-E--eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCC
Q 042434 372 LSDKDIRILNLGTYAE-R--VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGG 448 (517)
Q Consensus 372 ~~dg~i~i~d~~~~~~-~--~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s 448 (517)
+.||.|++||+++... . ...+..++..++|+|+++++++++.|+.|++||+++. .....+.+|......+...+..
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEEEEECSSCCSSSCCCEEEEC
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEEecCCceEEEEEEEEe
Confidence 9999999999998762 2 2345567999999999999999999999999999876 6667777776655444444446
Q ss_pred CCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEee--CCCcEEEeCCC
Q 042434 449 LDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS--DDHTIRIWGPC 512 (517)
Q Consensus 449 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~--~dg~v~iw~~~ 512 (517)
+++.++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .++++++ .|++|++|+.+
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE-NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSS-SEEEEEECTTTCCEEEEECC
T ss_pred CCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcC-CceEEEEccCCccEEEecCC
Confidence 789999999999999999999999999999999999999999999 6888887 69999999864
No 6
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.5e-45 Score=344.56 Aligned_cols=300 Identities=23% Similarity=0.358 Sum_probs=245.3
Q ss_pred cccEEEeccccC-cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCe
Q 042434 212 TETVQILTEHKN-EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEV 290 (517)
Q Consensus 212 ~~~~~~l~~h~~-~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 290 (517)
..++..+.+|.+ .|++++|+|+|++||+|+.|++|+||++..+..........+|...|.+++|+|++++|++|+.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 356788999988 9999999999999999999999999999765322223334789999999999999999999999999
Q ss_pred EEEEECCCC--cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC---eeEeeeCcCCCceEEEEEccCC
Q 042434 291 LKLWDVETG--ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN---EIKAWRGTRIPKVLDLAVTPDG 365 (517)
Q Consensus 291 i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~ 365 (517)
+++||+.++ +++..+.+|...|.+++|+|++++|++|+.|+. |++|+.... ........+...|.+++|+|++
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~--v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS--VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCe--EEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence 999999876 457788899999999999999999999999999 666666532 2223334455689999999999
Q ss_pred CEEEEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc-------------
Q 042434 366 ENLISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK------------- 428 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~------------- 428 (517)
+++++++.|+.|++||.++.. .....|...|.+++|+|++++|++++.|+.|++||.......
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~ 242 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence 999999999999999998764 345568889999999999999999999999999997432111
Q ss_pred -ceEEeC-cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc---------eeEEecCCCCCeeEEEecCCCCcEE
Q 042434 429 -PFKYTG-HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK---------PIEILSGHSMTVNCVSWNPKRPKML 497 (517)
Q Consensus 429 -~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~v~~~~~~~~~l 497 (517)
...+.+ |... +..+.|+|++..+++++.|+.|++|+...+. ......+|...|++++|+|+++.+|
T Consensus 243 ~~~~~~~~h~~~---v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l 319 (345)
T 3fm0_A 243 CICTLSGFHSRT---IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLL 319 (345)
T ss_dssp EEEEECSSCSSC---EEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEE
T ss_pred eeEEecCCCCCc---EEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEE
Confidence 112222 3333 5566679999999999999999999987542 1223468999999999999986699
Q ss_pred EEeeCCCcEEEeCCCCCCC
Q 042434 498 ASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 498 ~s~~~dg~v~iw~~~~~~~ 516 (517)
+||+.||+|++|++.++++
T Consensus 320 aS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 320 ASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EEEETTSCEEEEEECC---
T ss_pred EEcCCCCcEEEEEecCCCC
Confidence 9999999999999988764
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.1e-44 Score=343.26 Aligned_cols=292 Identities=20% Similarity=0.333 Sum_probs=251.6
Q ss_pred CCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434 210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE 289 (517)
Q Consensus 210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 289 (517)
...+....+.+|.+.|++++|+|++++||+|+.||+|+|||..++. ....+..|...|.+++|+|++.++++|+.|+
T Consensus 52 ~~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~---~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~ 128 (354)
T 2pbi_B 52 FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN---KEHAVTMPCTWVMACAYAPSGCAIACGGLDN 128 (354)
T ss_dssp CCCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEEECSSSCCCEEEECTTSSEEEEESTTS
T ss_pred cccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC---cceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 4456788999999999999999999999999999999999987653 4456777899999999999999999999999
Q ss_pred eEEEEECCCC------cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEc
Q 042434 290 VLKLWDVETG------ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVT 362 (517)
Q Consensus 290 ~i~iwd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~ 362 (517)
.+++|++... .....+..|...|.+++|+|++..|++++.|++ |.+||...... ..+.. +...|.+++++
T Consensus 129 ~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~--v~lwd~~~~~~~~~~~~-h~~~v~~~~~~ 205 (354)
T 2pbi_B 129 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT--CALWDVESGQLLQSFHG-HGADVLCLDLA 205 (354)
T ss_dssp EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSE--EEEEETTTCCEEEEEEC-CSSCEEEEEEC
T ss_pred CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCc--EEEEeCCCCeEEEEEcC-CCCCeEEEEEE
Confidence 9999998653 234566689999999999999999999999999 88889875544 44444 44689999998
Q ss_pred c--CCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC
Q 042434 363 P--DGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN 438 (517)
Q Consensus 363 ~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 438 (517)
| +++.+++|+.||.|++||++++. .....|...|.+++|+|++..+++++.|+.|++||++.. .....+..+. .
T Consensus 206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~-~~~~~~~~~~-~ 283 (354)
T 2pbi_B 206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD-REVAIYSKES-I 283 (354)
T ss_dssp CCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCTT-C
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCCC-c
Confidence 7 57899999999999999999887 445567889999999999999999999999999999876 3333333322 2
Q ss_pred ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 439 KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 439 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
...+.++.++|+|.+|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++ .+|++|+.||+|++|+
T Consensus 284 ~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg-~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDG-TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEC
T ss_pred ccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCC-CEEEEEcCCCCEEecC
Confidence 2235566779999999999999999999999999999999999999999999999 7999999999999996
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.5e-44 Score=334.51 Aligned_cols=292 Identities=21% Similarity=0.291 Sum_probs=253.5
Q ss_pred ccEEEeccccCcEEEEEECCCC-CEEEEeeCCCcEEEEEecCCCe--eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434 213 ETVQILTEHKNEVWFVQFSNNG-EYLASSSSDCSAIIWKVLEDSK--LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE 289 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 289 (517)
....++.+|.+.|++++|+|++ ++|++|+.|++|++|++..... ......+.+|...|.+++|+|++++|++|+.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 4567899999999999999965 8999999999999999864322 245678899999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccC-----
Q 042434 290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD----- 364 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----- 364 (517)
+|++||+.+++++..+.+|...|.+++|+|++.++++|+.|+. |.+|+..+..+..+..+. ..+.++.++|.
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~--i~vwd~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT--IKVWTIKGQCLATLLGHN-DWVSQVRVVPNEKADD 164 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSC--EEEEETTSCEEEEECCCS-SCEEEEEECCC-----
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCe--EEEEECCCCeEEEEeccC-CcEEEEEEccCCCCCC
Confidence 9999999999999999999999999999999999999999999 888898887777666554 58999999985
Q ss_pred -CCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceE
Q 042434 365 -GENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441 (517)
Q Consensus 365 -~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 441 (517)
+..+++++.|+.|++||+++.. .....|...+.+++|+|+++++++++.|+.|++||+.+. .....+..+. .
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~----~ 239 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK-KAMYTLSAQD----E 239 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEECCS----C
T ss_pred CccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCC----c
Confidence 4489999999999999999877 445678889999999999999999999999999999876 5555555443 2
Q ss_pred EEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC--------CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 442 IRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG--------HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 442 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
+..+.|+|++.++++++.+ .+++|++..+..+..+.. |...+.+++|+|+| .+|++|+.||.|++|++.+
T Consensus 240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG-QTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS-SEEEEEETTSCEEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC-CEEEEeecCceEEEEEEee
Confidence 6677779999999988765 499999998877766643 45679999999999 7999999999999999876
Q ss_pred C
Q 042434 514 S 514 (517)
Q Consensus 514 ~ 514 (517)
+
T Consensus 318 ~ 318 (319)
T 3frx_A 318 A 318 (319)
T ss_dssp C
T ss_pred c
Confidence 5
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.1e-45 Score=351.91 Aligned_cols=302 Identities=19% Similarity=0.347 Sum_probs=255.8
Q ss_pred CCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC
Q 042434 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA 288 (517)
Q Consensus 209 ~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 288 (517)
.....+.+++.+|.+.|++++|+|++++|++|+.||+|+|||..++ .....+..|...|.+++|+|++++|++|+.|
T Consensus 53 ~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~---~~~~~~~~h~~~v~~~~~s~~g~~las~~~d 129 (380)
T 3iz6_a 53 PTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS---QKTHAIKLHCPWVMECAFAPNGQSVACGGLD 129 (380)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT---EEEEEEECCCTTCCCCEECTTSSEEEECCSS
T ss_pred cceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ccceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence 3445678899999999999999999999999999999999999765 4557788999999999999999999999999
Q ss_pred CeEEEEECCCCc-------EEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCee-Eee----eCcCCCc
Q 042434 289 EVLKLWDVETGI-------CKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNEI-KAW----RGTRIPK 355 (517)
Q Consensus 289 g~i~iwd~~~~~-------~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~-~~~----~~~~~~~ 355 (517)
+.+++||+.+.. ....+.+|...|.++.|+|+ +..|++|+.|++ |.+||...... ..+ ...+...
T Consensus 130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~--i~~wd~~~~~~~~~~~~~~~~~h~~~ 207 (380)
T 3iz6_a 130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT--CVLWDVTTGQRISIFGSEFPSGHTAD 207 (380)
T ss_dssp SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSC--EEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCc--EEEEEcCCCcEEEEeecccCCCCccC
Confidence 999999997532 34457789999999999997 457999999999 88889875443 333 1345568
Q ss_pred eEEEEEcc-CCCEEEEEeCCCcEEEEECCCc-e--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceE
Q 042434 356 VLDLAVTP-DGENLISVLSDKDIRILNLGTY-A--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFK 431 (517)
Q Consensus 356 i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 431 (517)
|.++++++ +++.+++|+.|+.|++||++.. . .....|...|.+++|+|+++++++++.|+.|++||++++ .....
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~-~~~~~ 286 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG-HQLQV 286 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT-EEEEE
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC-cEEEE
Confidence 99999987 8899999999999999999743 2 556678889999999999999999999999999999876 44444
Q ss_pred EeCcccC----ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEe----cCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434 432 YTGHSQN----KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEIL----SGHSMTVNCVSWNPKRPKMLASASDD 503 (517)
Q Consensus 432 ~~~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~h~~~v~~v~~~~~~~~~l~s~~~d 503 (517)
+..+... ...+.++.|+|+|+++++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++ .+|+||+.|
T Consensus 287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~D 365 (380)
T 3iz6_a 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG-SALCTGSWD 365 (380)
T ss_dssp ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS-SEEEEECTT
T ss_pred ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC-CEEEEeeCC
Confidence 4433221 122556677999999999999999999999999888777 6799999999999999 799999999
Q ss_pred CcEEEeCCCCCCCC
Q 042434 504 HTIRIWGPCQSSEV 517 (517)
Q Consensus 504 g~v~iw~~~~~~~v 517 (517)
|+|++|++...+++
T Consensus 366 ~~i~iW~~~~~~~i 379 (380)
T 3iz6_a 366 KNLKIWAFSGHRKI 379 (380)
T ss_dssp SCEEEEECCSSSSC
T ss_pred CCEEEEecCCCccc
Confidence 99999999987653
No 10
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-43 Score=336.71 Aligned_cols=296 Identities=21% Similarity=0.253 Sum_probs=249.1
Q ss_pred cccEEEeccccCcEEEEEE-----CC-CCCEEEEeeCCCcEEEEEecCCC----eeeEEEEeccCCCCEEEEEECCCCCe
Q 042434 212 TETVQILTEHKNEVWFVQF-----SN-NGEYLASSSSDCSAIIWKVLEDS----KLTLKHTLRSHQNPVSFVAWSPDDTK 281 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~-----s~-~~~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~~~h~~~v~~l~~s~~~~~ 281 (517)
......+.+|.+.|++++| ++ ++++|++|+.|++|++||+.... .......+.+|...|.+++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 4567789999999999999 77 99999999999999999996543 12456778999999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee--CcCCCceEEE
Q 042434 282 LLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR--GTRIPKVLDL 359 (517)
Q Consensus 282 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~~~~~~i~~~ 359 (517)
+++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+. |.+||..+....... ..+...+.++
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~~~~~v~~~ 168 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAERE--IKLWNILGECKFSSAEKENHSDWVSCV 168 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSC--EEEEESSSCEEEECCTTTSCSSCEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCE--EEEEeccCCceeeeecccCCCceeeee
Confidence 999999999999999999999999999999999999999999999999999 888888765544333 2445689999
Q ss_pred EEccCC----------CEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 042434 360 AVTPDG----------ENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK 428 (517)
Q Consensus 360 ~~~~~~----------~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~ 428 (517)
+|+|++ .++++++.|+.|++||..... .....|...|.+++|+|++++|++++.|+.|++||+......
T Consensus 169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~ 248 (343)
T 2xzm_R 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP 248 (343)
T ss_dssp EECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred eeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence 999987 789999999999999965443 445678889999999999999999999999999999554344
Q ss_pred ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE--Eec-----------CCCCCeeEEEecCCCCc
Q 042434 429 PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE--ILS-----------GHSMTVNCVSWNPKRPK 495 (517)
Q Consensus 429 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~-----------~h~~~v~~v~~~~~~~~ 495 (517)
...+.. .. .+..+.|+|++.+++++ .|+.|++||+.+++... .+. +|...|.+++|+|++ .
T Consensus 249 ~~~~~~-~~---~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~ 322 (343)
T 2xzm_R 249 QREFDA-GS---TINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALG-K 322 (343)
T ss_dssp SEEEEC-SS---CEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSS-C
T ss_pred ceeecC-CC---cEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCC-C
Confidence 444322 22 26677779999988765 57789999998876543 443 688899999999999 7
Q ss_pred EEEEeeCCCcEEEeCCCCCC
Q 042434 496 MLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 496 ~l~s~~~dg~v~iw~~~~~~ 515 (517)
+|++|+.||.|++|++.++.
T Consensus 323 ~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp CEEEEETTSEEEEEEEEEEE
T ss_pred eEEEecCCceEEEEEEEccC
Confidence 99999999999999987654
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-43 Score=335.71 Aligned_cols=286 Identities=16% Similarity=0.185 Sum_probs=231.8
Q ss_pred cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC--------CCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434 220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE--------DSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL 291 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~--------~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 291 (517)
.|...|.+++|+|||++|++++ |+++++||... ............|...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4778899999999999999887 77888886310 00000111122356789999999985 78899999999
Q ss_pred EEEECCCCcEEEE----eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCC-
Q 042434 292 KLWDVETGICKHT----FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGE- 366 (517)
Q Consensus 292 ~iwd~~~~~~~~~----~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 366 (517)
+|||+.+++.... ..+|...|++++|+|++++|++|+.|++ |.+||..+.........|...|.+++|++++.
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~--i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDIC--IKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSC--EEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCe--EEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence 9999999875543 3489999999999999999999999999 88889886665555555667999999999985
Q ss_pred EEEEEeCCCcEEEEECCCce-EEe---eccCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceE
Q 042434 367 NLISVLSDKDIRILNLGTYA-ERV---ISEEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441 (517)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~-~~~---~~~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 441 (517)
.+++++.|+.|++||+++++ ... ..+...+.+++|+|+ +.++++++.|+.|++||+++. ..+..+.+|...
T Consensus 184 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~--- 259 (344)
T 4gqb_B 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SCVLSSAVHSQC--- 259 (344)
T ss_dssp EEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSC---
T ss_pred ceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-cEEEEEcCCCCC---
Confidence 78999999999999999877 222 234557899999995 567889999999999999887 777888888876
Q ss_pred EEeecCCCCC-cEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 442 IRSCFGGLDG-TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 442 i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
+.++.|+|++ ++|++|+.||+|++||+.+++++ .+.+|.+.|++++|+|++..+|+|||.||+|++|++.+.
T Consensus 260 v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 5566679987 58999999999999999988765 567899999999999998778899999999999999764
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-43 Score=338.57 Aligned_cols=289 Identities=18% Similarity=0.221 Sum_probs=230.6
Q ss_pred eccccCcEEEEEECCCCCEEEEeeC------CCcEEEEEecCCCee-eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCe
Q 042434 218 LTEHKNEVWFVQFSNNGEYLASSSS------DCSAIIWKVLEDSKL-TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEV 290 (517)
Q Consensus 218 l~~h~~~v~~~~~s~~~~~l~t~~~------dg~i~iw~~~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 290 (517)
..+|.+.|++++|||||++||+|+. |+.|++|+..++... .......+|...|.+++|+|++. +++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence 3579999999999999999999997 778999987554321 11233456889999999999985 556788999
Q ss_pred EEEEECCCCcEEE----EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCC
Q 042434 291 LKLWDVETGICKH----TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGE 366 (517)
Q Consensus 291 i~iwd~~~~~~~~----~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 366 (517)
|++||+.+++... ...+|...|.+++|+|++++|++|+.|+. |.+||............+...|.+++|++++.
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~--v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~ 194 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS--VKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD 194 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSC--EEEEETTTTEEEEEECCCSSCEEEEEECTTCS
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCe--EEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence 9999999887543 33478999999999999999999999999 88889887665555555667899999999885
Q ss_pred -EEEEEeCCCcEEEEECCCceE----EeeccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCce
Q 042434 367 -NLISVLSDKDIRILNLGTYAE----RVISEEHPITSLSVSVDC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKY 440 (517)
Q Consensus 367 -~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 440 (517)
.+++++.||.|++||+++++. ....+...+.+++|+|++ .++++++.|+.|++||+++. .....+.+|...
T Consensus 195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~-- 271 (357)
T 4g56_B 195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQN-- 271 (357)
T ss_dssp SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSC--
T ss_pred ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEecccee--
Confidence 788999999999999988762 223456679999999974 67888999999999999887 677778888776
Q ss_pred EEEeecCCCCC-cEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecC-CCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 441 VIRSCFGGLDG-TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP-KRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 441 ~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
+.++.|+|++ ++|++|+.||+|+|||+++++++..+ +|.+.|++++|+| ++ .+|+|+|.||+|++|++.+..
T Consensus 272 -v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~-~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 272 -ITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDH-SKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp -EEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSST-TEEEEEETTSCEEEEECC---
T ss_pred -EEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCC-CEEEEEcCCCeEEEEECCCCC
Confidence 5566668887 68999999999999999999888766 7999999999999 56 799999999999999997643
No 13
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1e-42 Score=356.07 Aligned_cols=320 Identities=20% Similarity=0.291 Sum_probs=259.1
Q ss_pred hccccccCCCCCc--cccccCCC-cccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeE
Q 042434 183 SQIDSCQYHNSSV--AISLYEDH-CCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTL 259 (517)
Q Consensus 183 ~q~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~ 259 (517)
..+..+.|++... .++...|. ...|+..+.++...+.+|.+.|++++|+|+|++||+|+.|++|++||..++. .
T Consensus 148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~---~ 224 (611)
T 1nr0_A 148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT---K 224 (611)
T ss_dssp SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---E
T ss_pred CCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc---E
Confidence 4456667776542 34444444 4556666678888999999999999999999999999999999999987664 3
Q ss_pred EEEec-------cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEE----------------------------
Q 042434 260 KHTLR-------SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT---------------------------- 304 (517)
Q Consensus 260 ~~~~~-------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------------------------- 304 (517)
...+. +|.+.|.+++|+|++++|++++.|++|++||+.+++++..
T Consensus 225 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~ 304 (611)
T 1nr0_A 225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 304 (611)
T ss_dssp EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCC
Confidence 34553 7999999999999999999999999999999998765543
Q ss_pred ---------------eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee--------------------
Q 042434 305 ---------------FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR-------------------- 349 (517)
Q Consensus 305 ---------------~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-------------------- 349 (517)
+.+|...|.+++|+|++++|++++.|+. |.+||..+.......
T Consensus 305 ~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~--v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~ 382 (611)
T 1nr0_A 305 FINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH--INSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 382 (611)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE
T ss_pred cEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc--EEEEECCCCceeeecccCCcceEEEEEECCCCcEE
Confidence 3478899999999999999999999999 777776532211100
Q ss_pred ------------C--------------------------------------------------cCCCceEEEEEccCCCE
Q 042434 350 ------------G--------------------------------------------------TRIPKVLDLAVTPDGEN 367 (517)
Q Consensus 350 ------------~--------------------------------------------------~~~~~i~~~~~~~~~~~ 367 (517)
. .+...+.+++|+|+|++
T Consensus 383 s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~ 462 (611)
T 1nr0_A 383 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQF 462 (611)
T ss_dssp EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCE
T ss_pred EEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCE
Confidence 0 01124678999999999
Q ss_pred EEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceE--EeCcccCceEE
Q 042434 368 LISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFK--YTGHSQNKYVI 442 (517)
Q Consensus 368 l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~~~i 442 (517)
+++|+.|+.|++||+.+.. .....|...|.+++|+|+|+++++++.|+.|++||+.+....... +.+|... +
T Consensus 463 lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~---V 539 (611)
T 1nr0_A 463 VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK---V 539 (611)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC---E
T ss_pred EEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccc---e
Confidence 9999999999999998754 233568889999999999999999999999999999763233322 2335554 6
Q ss_pred EeecCCCCCcEEEEecCCCcEEEEecCCCc-ee-EEecCC-CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 443 RSCFGGLDGTFIASGSENSQIYIWNRRNSK-PI-EILSGH-SMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 443 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~-~~~~~h-~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
.++.|+|||++|++|+.|++|++||+.++. .+ ..+.+| ...|++++|+|++ . |++++.|++|++|++.
T Consensus 540 ~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~-~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 540 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-T-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETT-E-EEEEETTSCEEEEECC
T ss_pred eEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCC-E-EEEecCCCCEEEEecc
Confidence 677789999999999999999999998875 34 677889 8999999999999 5 9999999999999974
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.6e-42 Score=333.96 Aligned_cols=285 Identities=24% Similarity=0.415 Sum_probs=240.5
Q ss_pred cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccC------------------CCCEEEEEECCCCCe
Q 042434 220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSH------------------QNPVSFVAWSPDDTK 281 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h------------------~~~v~~l~~s~~~~~ 281 (517)
+|.+.|+|++|+|+|++||+|+ ++.+++|++.++.. ...+..| ...|.+++|+|++++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~ 137 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL---VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 137 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE---EEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE---EEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence 6999999999999999999986 68999999976643 3334333 234999999999999
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434 282 LLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV 361 (517)
Q Consensus 282 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 361 (517)
|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+. +.+||..+.........+ ..+.++++
T Consensus 138 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~--v~iwd~~~~~~~~~~~~~-~~v~~~~~ 214 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT--VRIWDLRTGQCSLTLSIE-DGVTTVAV 214 (393)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE--EEEEETTTTEEEEEEECS-SCEEEEEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCc--EEEEECCCCeeEEEEEcC-CCcEEEEE
Confidence 999999999999999999999999999999999999999999999999999 888898765543333222 47999999
Q ss_pred cc-CCCEEEEEeCCCcEEEEECCCceE--Ee-------eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-----
Q 042434 362 TP-DGENLISVLSDKDIRILNLGTYAE--RV-------ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW----- 426 (517)
Q Consensus 362 ~~-~~~~l~~~~~dg~i~i~d~~~~~~--~~-------~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~----- 426 (517)
+| +++++++++.|+.|++||++++.. .. ..|...|.+++|+|+++++++++.|+.|++||++...
T Consensus 215 ~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~ 294 (393)
T 1erj_A 215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294 (393)
T ss_dssp CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccc
Confidence 99 899999999999999999988762 11 3567889999999999999999999999999997531
Q ss_pred ------ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecC------CCC
Q 042434 427 ------EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP------KRP 494 (517)
Q Consensus 427 ------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~------~~~ 494 (517)
.....+.+|... +.++.+++++.+|++|+.||.|++||..+++++..+.+|.+.|.+++|++ ++
T Consensus 295 ~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~- 370 (393)
T 1erj_A 295 KTPNSGTCEVTYIGHKDF---VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY- 370 (393)
T ss_dssp ------CEEEEEECCSSC---EEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTC-
T ss_pred cCCCCCcceEEEecccCc---EEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCC-
Confidence 123345566554 55566699999999999999999999999999999999999999999986 56
Q ss_pred cEEEEeeCCCcEEEeCCCCCC
Q 042434 495 KMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 495 ~~l~s~~~dg~v~iw~~~~~~ 515 (517)
.+|+||+.||+|++|++...+
T Consensus 371 ~~l~sgs~Dg~i~iW~~~~~~ 391 (393)
T 1erj_A 371 NVFATGSGDCKARIWKYKKIA 391 (393)
T ss_dssp EEEEEEETTSEEEEEEEEEC-
T ss_pred CEEEEECCCCcEEECcccccC
Confidence 799999999999999987644
No 15
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.1e-42 Score=348.70 Aligned_cols=311 Identities=26% Similarity=0.462 Sum_probs=271.2
Q ss_pred cccccCCCCCc-cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe
Q 042434 185 IDSCQYHNSSV-AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL 263 (517)
Q Consensus 185 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 263 (517)
+..+.+.++.. .+....+.....+....+....+.+|.+.|++++|+|++++|++++.||.|++|+.... ....+
T Consensus 265 v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~----~~~~~ 340 (577)
T 2ymu_A 265 VNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----HLQTL 340 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC----EEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----eeEEE
Confidence 44455555544 44455555555556778889999999999999999999999999999999999997532 34567
Q ss_pred ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC
Q 042434 264 RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN 343 (517)
Q Consensus 264 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~ 343 (517)
.+|...|.+++|+|++++|++++.||.|++||. +++.+..+..|...|.+++|+|++++|++++.|+. |.+|+..+.
T Consensus 341 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~--v~~~~~~~~ 417 (577)
T 2ymu_A 341 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT--VKLWNRNGQ 417 (577)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE--EEEECTTCC
T ss_pred eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE--EEEEeCCCC
Confidence 889999999999999999999999999999995 67888889899999999999999999999999999 788888877
Q ss_pred eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434 344 EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV 422 (517)
Q Consensus 344 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~ 422 (517)
.+..+..+. ..|.+++|+|+++++++++.|+.|++||..... .....+...+.+++|+|+++++++++.|+.|++||.
T Consensus 418 ~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~ 496 (577)
T 2ymu_A 418 LLQTLTGHS-SSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 496 (577)
T ss_dssp EEEEEECCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred EEEEecCCC-CCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC
Confidence 777766554 589999999999999999999999999986655 556678889999999999999999999999999996
Q ss_pred CCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC
Q 042434 423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD 502 (517)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~ 502 (517)
.+ .....+.+|... +..+.|+|+|++|++++.||.|++||. +++++.++.+|.+.|++++|+|++ .+|+|++.
T Consensus 497 ~~--~~~~~~~~h~~~---v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg-~~l~s~~~ 569 (577)
T 2ymu_A 497 NG--QLLQTLTGHSSS---VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG-QTIASASS 569 (577)
T ss_dssp TS--CEEEEEECCSSC---EEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS-SCEEEEET
T ss_pred CC--CEEEEEeCCCCC---EEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCC-CEEEEEeC
Confidence 54 566778888766 566677999999999999999999995 688999999999999999999999 78999999
Q ss_pred CCcEEEeC
Q 042434 503 DHTIRIWG 510 (517)
Q Consensus 503 dg~v~iw~ 510 (517)
|++|++||
T Consensus 570 D~~i~~Wd 577 (577)
T 2ymu_A 570 DKTVKLWN 577 (577)
T ss_dssp TSCEEEEC
T ss_pred CCEEEEeC
Confidence 99999997
No 16
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.2e-41 Score=321.13 Aligned_cols=295 Identities=21% Similarity=0.292 Sum_probs=249.7
Q ss_pred ccEEEeccccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCCCe--eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434 213 ETVQILTEHKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDSK--LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE 289 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 289 (517)
....+|+||.+.|++++|+|+ +++||||+.||+|+|||+.+... ......+.+|...|.+++|+|++++|++++.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 455679999999999999997 68999999999999999975432 345678899999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccCC--C
Q 042434 290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPDG--E 366 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~--~ 366 (517)
.|++|+...+........+...+....+++++..+++++.|+. +.+|+....... .....+...+..++|++++ .
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~--~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 186 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKT--IKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP 186 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSC--EEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCe--EEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence 9999999999988888888999999999999999999999999 888888765443 3334455689999998865 4
Q ss_pred EEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEe
Q 042434 367 NLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS 444 (517)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~ 444 (517)
.+++++.|+.|++||+++.. .....+..+|.+++|+|+++++++++.|+.|++||+++. .....+..+.. +..
T Consensus 187 ~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~----v~~ 261 (340)
T 4aow_A 187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG-KHLYTLDGGDI----INA 261 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEECSSC----EEE
T ss_pred EEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-ceeeeecCCce----EEe
Confidence 78899999999999999887 445567889999999999999999999999999999876 55555554432 566
Q ss_pred ecCCCCCcEEEEecCCCcEEEEecCCCceeEEec---------CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS---------GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
+.++|++.++ +++.|+.|++||++++..+..+. +|...|++++|+|++ .+|++|+.||.|+|||+.+|+
T Consensus 262 ~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 262 LCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG-QTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS-SEEEEEETTSCEEEEEEEC--
T ss_pred eecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEeCCCcC
Confidence 6678887655 55679999999999887766654 588999999999999 799999999999999999986
Q ss_pred C
Q 042434 516 E 516 (517)
Q Consensus 516 ~ 516 (517)
+
T Consensus 340 r 340 (340)
T 4aow_A 340 R 340 (340)
T ss_dssp -
T ss_pred C
Confidence 4
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-41 Score=321.02 Aligned_cols=293 Identities=20% Similarity=0.293 Sum_probs=228.8
Q ss_pred cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe-cc-CCCCEEEEEECCCCCeEEEEeCCC
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL-RS-HQNPVSFVAWSPDDTKLLTCGNAE 289 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~-h~~~v~~l~~s~~~~~l~s~~~dg 289 (517)
.+++..+.+|.+.|++++|+|+ +||+|+.|++|++|++..+. ......+ .+ |...|.+++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~-~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDD-FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSC-CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCC-eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 4567889999999999999998 99999999999999997542 2344455 44 999999999999999999999999
Q ss_pred eEEEEECCC-------CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--C--eeEeeeCcCCCceEE
Q 042434 290 VLKLWDVET-------GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--N--EIKAWRGTRIPKVLD 358 (517)
Q Consensus 290 ~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~--~~~~~~~~~~~~i~~ 358 (517)
+|++||+.. .++...+.+|...|.+++|+|++++|++|+.|+. |.+|+... . ........+...|.+
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~--v~iwd~~~~~~~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS--VWIWETDESGEEYECISVLQEHSQDVKH 158 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSC--EEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCE--EEEEeccCCCCCeEEEEEeccCCCceEE
Confidence 999999853 4567788899999999999999999999999999 77777732 1 222233345568999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCC--CCEEEEEeCCCeEEEEEcCCCC------
Q 042434 359 LAVTPDGENLISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVD--CKNFIVNLNSQEIHMWDVAGKW------ 426 (517)
Q Consensus 359 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~------ 426 (517)
++|+|++.+|++++.|++|++||..+.. .....|...|.+++|+|+ +..+++++.|+.|++||+....
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~ 238 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE 238 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccce
Confidence 9999999999999999999999987652 345568889999999998 6789999999999999986431
Q ss_pred -ccceEEeC-cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc--eeEE-ecCCCC-CeeEEEecC--CCCcEEE
Q 042434 427 -EKPFKYTG-HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK--PIEI-LSGHSM-TVNCVSWNP--KRPKMLA 498 (517)
Q Consensus 427 -~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~-~~~h~~-~v~~v~~~~--~~~~~l~ 498 (517)
.....+.+ |... +..+.|++++ +|++++.||.|++||..+++ .... +.+|.. .|++++|+| ++ .+|+
T Consensus 239 ~~~~~~~~~~h~~~---v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~-~~la 313 (330)
T 2hes_X 239 WVCEAILPDVHKRQ---VYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGK-TILA 313 (330)
T ss_dssp EEEEEECCSCCSSC---EEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC------CCEE
T ss_pred eEEeeecccccccc---eEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCc-eEEE
Confidence 11122222 4443 5555567655 89999999999999998874 3333 467887 899999999 56 7999
Q ss_pred EeeCCCcEEEeCCCCC
Q 042434 499 SASDDHTIRIWGPCQS 514 (517)
Q Consensus 499 s~~~dg~v~iw~~~~~ 514 (517)
||+.||+|++|++...
T Consensus 314 s~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 314 TGGDDGIVNFWSLEKA 329 (330)
T ss_dssp EEETTSEEEEEEC---
T ss_pred EecCCCcEEEEEeccC
Confidence 9999999999998753
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.8e-42 Score=349.55 Aligned_cols=321 Identities=19% Similarity=0.224 Sum_probs=260.9
Q ss_pred cccccCCCCCc-cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe
Q 042434 185 IDSCQYHNSSV-AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL 263 (517)
Q Consensus 185 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 263 (517)
.....|.++.. .+....+....|+.........+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++.. .....+
T Consensus 21 ~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~-~~~~~~ 99 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-ILKTTI 99 (611)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC-CEEEEE
T ss_pred eeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc-eeeEee
Confidence 34445665554 2223334444555556778889999999999999999999999999999999999865433 344577
Q ss_pred ccCCCCEEEEEECCCCCeEEEEeCC----CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC-eEEEeeCCCceeEEEE
Q 042434 264 RSHQNPVSFVAWSPDDTKLLTCGNA----EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK-RLVCGSSDTEKGIFMC 338 (517)
Q Consensus 264 ~~h~~~v~~l~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~v~i~~~ 338 (517)
.+|.++|.+++|+|++++|++++.+ +.|++|| +++....+.+|...|.+++|+|++. .|++|+.|++ +.+|
T Consensus 100 ~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~--v~lw 175 (611)
T 1nr0_A 100 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT--VAIF 175 (611)
T ss_dssp ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSC--EEEE
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCe--EEEE
Confidence 8899999999999999999998865 3677777 5667778889999999999999987 5999999999 7788
Q ss_pred eCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEee--------ccCCCeeEEEEcCCCCEEE
Q 042434 339 DCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVI--------SEEHPITSLSVSVDCKNFI 409 (517)
Q Consensus 339 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~--------~~~~~i~~~~~s~~~~~l~ 409 (517)
+............|...|.+++|+|+++++++++.|++|++||+.++. .... .|...|.+++|+|++++++
T Consensus 176 d~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~ 255 (611)
T 1nr0_A 176 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255 (611)
T ss_dssp ETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred ECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEE
Confidence 877655444445566789999999999999999999999999998776 2222 5788999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceEEeCccc-CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEE
Q 042434 410 VNLNSQEIHMWDVAGKWEKPFKYTGHSQ-NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVS 488 (517)
Q Consensus 410 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~ 488 (517)
+++.|+.|++||+.+. .....+..+.. ........+ ++..+++++.||.+++||..++++...+.+|...|++++
T Consensus 256 s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~ 331 (611)
T 1nr0_A 256 SASADKTIKIWNVATL-KVEKTIPVGTRIEDQQLGIIW---TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS 331 (611)
T ss_dssp EEETTSEEEEEETTTT-EEEEEEECCSSGGGCEEEEEE---CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred EEeCCCeEEEEeCCCC-ceeeeecCCCCccceeEEEEE---cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE
Confidence 9999999999999876 44444443221 111222222 678899999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 489 WNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 489 ~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
|+|++ .+|++++.||+|++||+.+++
T Consensus 332 ~spdg-~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 332 SSADG-KTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp ECTTS-SEEEEEETTSCEEEEETTTCC
T ss_pred EeCCC-CEEEEEeCCCcEEEEECCCCc
Confidence 99999 799999999999999998764
No 19
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-40 Score=315.23 Aligned_cols=316 Identities=16% Similarity=0.158 Sum_probs=260.8
Q ss_pred ccccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe
Q 042434 186 DSCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL 263 (517)
Q Consensus 186 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 263 (517)
..+.+.++.. .+....+....+............+|.+.|++++|+|++++|++++ ||.|++|++.++........+
T Consensus 13 ~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~ 91 (337)
T 1gxr_A 13 YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL 91 (337)
T ss_dssp CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE
T ss_pred eEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecc
Confidence 3445555555 2333333333344333344444558999999999999999999998 999999999876543333443
Q ss_pred c--cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc--EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEe
Q 042434 264 R--SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI--CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCD 339 (517)
Q Consensus 264 ~--~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~ 339 (517)
. +|...|.+++|+|++++|++++.||.|++||+.+++ ....+..|...|.+++|+|+++++++++.||. +.+|+
T Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--v~~~d 169 (337)
T 1gxr_A 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN--IAVWD 169 (337)
T ss_dssp ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSC--EEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCc--EEEEe
Confidence 3 799999999999999999999999999999999887 56677789999999999999999999999999 88899
Q ss_pred CCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434 340 CDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIH 418 (517)
Q Consensus 340 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 418 (517)
..+.........+...+.+++|+|+++.+++++.||.|++||+++.. .....+...+.+++|+|+++.+++++.++.|+
T Consensus 170 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~ 249 (337)
T 1gxr_A 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVE 249 (337)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEE
Confidence 88665544444455689999999999999999999999999999887 55566788999999999999999999999999
Q ss_pred EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEE
Q 042434 419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLA 498 (517)
Q Consensus 419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~ 498 (517)
+||+.+.. ...+..|... +..+.++|+++++++++.||.|++||+.+++.+... .|...|.+++|+|++ .+|+
T Consensus 250 ~~~~~~~~--~~~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~ 322 (337)
T 1gxr_A 250 VLHVNKPD--KYQLHLHESC---VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD-KYIV 322 (337)
T ss_dssp EEETTSSC--EEEECCCSSC---EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTS-CEEE
T ss_pred EEECCCCC--eEEEcCCccc---eeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCC-CEEE
Confidence 99998752 3455555554 566667999999999999999999999999888655 488999999999999 7999
Q ss_pred EeeCCCcEEEeCC
Q 042434 499 SASDDHTIRIWGP 511 (517)
Q Consensus 499 s~~~dg~v~iw~~ 511 (517)
+++.||.|++|++
T Consensus 323 ~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 323 TGSGDKKATVYEV 335 (337)
T ss_dssp EEETTSCEEEEEE
T ss_pred EecCCCeEEEEEE
Confidence 9999999999986
No 20
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-40 Score=315.83 Aligned_cols=291 Identities=21% Similarity=0.257 Sum_probs=249.2
Q ss_pred cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434 214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL 293 (517)
Q Consensus 214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 293 (517)
....+.+|.+.|++++|+|++++|++|+.||.|++||+.++ .....+.+|...|.+++|+|++++|++++.||.|++
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG---ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 45568999999999999999999999999999999999765 455788899999999999999999999999999999
Q ss_pred EECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCC-----CceeEEEEeCCCC----------eeEeeeCcC-CCceE
Q 042434 294 WDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD-----TEKGIFMCDCDGN----------EIKAWRGTR-IPKVL 357 (517)
Q Consensus 294 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-----~~v~i~~~~~~~~----------~~~~~~~~~-~~~i~ 357 (517)
||+.+++.+..+. +...|.+++|+|+++++++++.+ +.+.+|....... .......+. ...+.
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred EECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 9999999998886 88899999999999999999998 9844444433321 111122111 12799
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCC-ce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeC
Q 042434 358 DLAVTPDGENLISVLSDKDIRILNLGT-YA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG 434 (517)
Q Consensus 358 ~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 434 (517)
+++|+|+++.+++++.||.|++||+++ .. .....+...+.+++|+|+++++++++.|+.|++||+++. .....+.
T Consensus 180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~- 257 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL-QVLKKYE- 257 (369)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEE-
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC-ceeeeec-
Confidence 999999999999999999999999998 44 445567889999999999999999999999999999876 4445554
Q ss_pred cccCceEEEeecCCCCCcEEEEecCCC--------------cEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEe
Q 042434 435 HSQNKYVIRSCFGGLDGTFIASGSENS--------------QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASA 500 (517)
Q Consensus 435 ~~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~ 500 (517)
+.. .+..+.++|+++++++++.++ .+++||..+++++..+.+|...|++++|+|++ .+|+++
T Consensus 258 ~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~ 333 (369)
T 3zwl_B 258 TDC---PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQG-TSYASG 333 (369)
T ss_dssp CSS---CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred CCC---CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCC-CEEEEE
Confidence 222 255666799999999999988 89999999999999999999999999999999 799999
Q ss_pred eCCCcEEEeCCCCC
Q 042434 501 SDDHTIRIWGPCQS 514 (517)
Q Consensus 501 ~~dg~v~iw~~~~~ 514 (517)
+.||.|++|++.++
T Consensus 334 ~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 334 GEDGFIRLHHFEKS 347 (369)
T ss_dssp ETTSEEEEEEECHH
T ss_pred cCCCeEEEEECccc
Confidence 99999999998754
No 21
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.7e-40 Score=332.93 Aligned_cols=313 Identities=26% Similarity=0.444 Sum_probs=269.9
Q ss_pred cccccCCCCCc-cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe
Q 042434 185 IDSCQYHNSSV-AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL 263 (517)
Q Consensus 185 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~ 263 (517)
+..+.+.++.. .+....+.....+....+.+..+.+|...|++++|+|++++|++++.|+.|++|+.. + .....+
T Consensus 224 v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~---~~~~~~ 299 (577)
T 2ymu_A 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-G---QLLQTL 299 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-S---CEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-C---cEEEEE
Confidence 34444555443 444455555555567788899999999999999999999999999999999999964 2 345678
Q ss_pred ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC
Q 042434 264 RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN 343 (517)
Q Consensus 264 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~ 343 (517)
.+|...|.+++|+|+++.+++++.||+|++||.. +..+..+..|...|.+++|+|+++++++++.|+. +.+|+..+.
T Consensus 300 ~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~--v~~~~~~~~ 376 (577)
T 2ymu_A 300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKT--VKLWNRNGQ 376 (577)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSE--EEEEETTCC
T ss_pred ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCE--EEEEcCCCC
Confidence 8999999999999999999999999999999975 4556778899999999999999999999999999 778888877
Q ss_pred eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434 344 EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV 422 (517)
Q Consensus 344 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~ 422 (517)
.+..+..+. ..|.+++|+|+++++++++.|+.|++||..... .....+...+.+++|+|+++++++++.|+.|++||.
T Consensus 377 ~~~~~~~~~-~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~ 455 (577)
T 2ymu_A 377 LLQTLTGHS-SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR 455 (577)
T ss_dssp EEEEEECCS-SCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEecCCC-CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 777766554 589999999999999999999999999976554 556678889999999999999999999999999997
Q ss_pred CCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC
Q 042434 423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD 502 (517)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~ 502 (517)
.. .....+.+|... +.++.++|++++|++++.|+.|++||. +++++..+.+|...|++++|+|++ .+|++++.
T Consensus 456 ~~--~~~~~~~~~~~~---v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~ 528 (577)
T 2ymu_A 456 NG--QLLQTLTGHSSS---VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASD 528 (577)
T ss_dssp TS--CEEEEEECCSSC---EEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTS-SCEEEEET
T ss_pred CC--CEEEEEcCCCCC---EEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCC-CEEEEEEC
Confidence 54 456677777765 666777999999999999999999995 688999999999999999999999 79999999
Q ss_pred CCcEEEeCCC
Q 042434 503 DHTIRIWGPC 512 (517)
Q Consensus 503 dg~v~iw~~~ 512 (517)
||.|++||..
T Consensus 529 dg~v~lwd~~ 538 (577)
T 2ymu_A 529 DKTVKLWNRN 538 (577)
T ss_dssp TSEEEEECTT
T ss_pred cCEEEEEeCC
Confidence 9999999964
No 22
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.7e-40 Score=342.78 Aligned_cols=292 Identities=22% Similarity=0.315 Sum_probs=246.3
Q ss_pred ccEEEeccccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCCCe--eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434 213 ETVQILTEHKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDSK--LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE 289 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 289 (517)
.....+.+|.+.|++++|+|+ +++|+||+.||+|++|++..... ......+.+|...|.+++|+|++++|++|+.||
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 345578999999999999986 47999999999999999975432 234567889999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee---CcCCCceEEEEEccCC-
Q 042434 290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR---GTRIPKVLDLAVTPDG- 365 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~- 365 (517)
+|++||+.++.+...+.+|...|.+++|+|++++|++|+.|++ |.+|+..+....... ..|...|.+++|+|++
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~--i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT--IKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSC--EEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCE--EEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 9999999999999999999999999999999999999999999 888888765544432 2355679999999987
Q ss_pred -CEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEE
Q 042434 366 -ENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI 442 (517)
Q Consensus 366 -~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i 442 (517)
..+++++.|+.|++||+++.. .....|...|.+++|+|+++++++++.|+.|++||++++ .....+..+. .+
T Consensus 531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~-~~~~~~~~~~----~v 605 (694)
T 3dm0_A 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG-KKLYSLEANS----VI 605 (694)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT-EEEECCBCSS----CE
T ss_pred cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-ceEEEecCCC----cE
Confidence 589999999999999999877 445568889999999999999999999999999999876 4444443322 36
Q ss_pred EeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC-------------------CCeeEEEecCCCCcEEEEeeCC
Q 042434 443 RSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS-------------------MTVNCVSWNPKRPKMLASASDD 503 (517)
Q Consensus 443 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-------------------~~v~~v~~~~~~~~~l~s~~~d 503 (517)
.++.++|++.++++++ ++.|++||+.+++.+..+..+. ..+++++|+|++ .+|++|+.|
T Consensus 606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg-~~l~sgs~D 683 (694)
T 3dm0_A 606 HALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG-STLFSGYTD 683 (694)
T ss_dssp EEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS-SEEEEEETT
T ss_pred EEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC-CEEEEEcCC
Confidence 6777799999888776 5569999999998887775331 137899999999 799999999
Q ss_pred CcEEEeCCCC
Q 042434 504 HTIRIWGPCQ 513 (517)
Q Consensus 504 g~v~iw~~~~ 513 (517)
|+|++|++..
T Consensus 684 g~i~iW~i~~ 693 (694)
T 3dm0_A 684 GVIRVWGIGR 693 (694)
T ss_dssp SEEEEEEC--
T ss_pred CeEEEEeccC
Confidence 9999999863
No 23
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5e-40 Score=317.27 Aligned_cols=292 Identities=14% Similarity=0.187 Sum_probs=242.4
Q ss_pred cccEEEeccccCcEEEEEECCCC-CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC-CCCeEEEEeCCC
Q 042434 212 TETVQILTEHKNEVWFVQFSNNG-EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAE 289 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg 289 (517)
......+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.++... ......+|...|.+++|+| ++++|++++.|+
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-SFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-EEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-eeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 45677889999999999999999 99999999999999999866432 2223347999999999999 779999999999
Q ss_pred eEEEEECCCCcEEEEeCCC---CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCC
Q 042434 290 VLKLWDVETGICKHTFGDH---GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGE 366 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 366 (517)
.|++||+.+ .....+..+ ...|.+++|+|++++|++++.|+. |++||..+..+..+..+. ..|.+++|+|+++
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~h~-~~v~~~~~~~~~~ 217 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGR--LLLLGLDGHEIFKEKLHK-AKVTHAEFNPRCD 217 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSE--EEEEETTSCEEEEEECSS-SCEEEEEECSSCT
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCC--EEEEECCCCEEEEeccCC-CcEEEEEECCCCC
Confidence 999999986 455555433 488999999999999999999999 888898877777776554 5899999999999
Q ss_pred -EEEEEeCCCcEEEEECCC----ce-EEeeccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC-
Q 042434 367 -NLISVLSDKDIRILNLGT----YA-ERVISEEHPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN- 438 (517)
Q Consensus 367 -~l~~~~~dg~i~i~d~~~----~~-~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~- 438 (517)
.+++++.|+.|++||+++ .. .....+...+.+++|+| +++++++++.|+.|++||+++. .....+.+|...
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~ 296 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW-SKPDQIIIHPHRQ 296 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT-TSCSEEEECCBCC
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC-ccccccccccccc
Confidence 999999999999999987 33 44457889999999999 9999999999999999999876 444444433211
Q ss_pred ------c-------eEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC--CCCCeeEEEecCCCCcEEEEeeCC
Q 042434 439 ------K-------YVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG--HSMTVNCVSWNPKRPKMLASASDD 503 (517)
Q Consensus 439 ------~-------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~d 503 (517)
. ..+..+.++|++++ +|+.||.|++||+.+++++..+.+ |...+..++|+|++ .+|++++ |
T Consensus 297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g-~~l~s~s-d 372 (383)
T 3ei3_B 297 FQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTG-DVLASGM-G 372 (383)
T ss_dssp CTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTS-SEEEEEE-T
T ss_pred cccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCc-cEEEEec-C
Confidence 0 11222445677776 888999999999999999999987 45778888999999 7899997 9
Q ss_pred CcEEEeCCCC
Q 042434 504 HTIRIWGPCQ 513 (517)
Q Consensus 504 g~v~iw~~~~ 513 (517)
|.|++|++++
T Consensus 373 ~~i~iw~~~~ 382 (383)
T 3ei3_B 373 FNILIWNRED 382 (383)
T ss_dssp TEEEEEECC-
T ss_pred CcEEEEecCC
Confidence 9999999975
No 24
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.4e-40 Score=305.63 Aligned_cols=253 Identities=18% Similarity=0.309 Sum_probs=218.1
Q ss_pred eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE
Q 042434 258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337 (517)
Q Consensus 258 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~ 337 (517)
....++.+|.+.|.+++|+|++++|++++.||+|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+. |.+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~--i~v 81 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR--IRV 81 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSE--EEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCE--EEE
Confidence 345678899999999999999999999999999999999999999999999999999999999999999999999 888
Q ss_pred EeCCCCe-eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcC-CCCEEEEEe
Q 042434 338 CDCDGNE-IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSV-DCKNFIVNL 412 (517)
Q Consensus 338 ~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~-~~~~l~~~~ 412 (517)
||..... +..+.. |...|.+++|+|+++++++++.|++|++||+++.. .....|...|.+++|+| ++..+++++
T Consensus 82 wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 82 FNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp EETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred EECCCCcEEEEEeC-CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 8887544 444444 45689999999999999999999999999998763 34557888999999999 678999999
Q ss_pred CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCC
Q 042434 413 NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK 492 (517)
Q Consensus 413 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~ 492 (517)
.|+.|++||++..........++......+... ..+++.+|++|+.||+|++||+++++++.++.+|...|.+++|+|+
T Consensus 161 ~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~ 239 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY-PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239 (304)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCEEEEEEC-CSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred CCCeEEEEECCCCCccceeccCCcCcEEEEEEE-EcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCC
Confidence 999999999977633333333443443333222 2458899999999999999999999999999999999999999999
Q ss_pred CCcEEEEeeCCCcEEEeCCCCCC
Q 042434 493 RPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 493 ~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
+ .+|++|+.||+|++||+.+++
T Consensus 240 ~-~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 240 L-PIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp S-SEEEEEETTSCEEEEETTTCC
T ss_pred C-CEEEEEcCCCeEEEEECCCCc
Confidence 9 699999999999999998765
No 25
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.3e-40 Score=320.19 Aligned_cols=294 Identities=14% Similarity=0.106 Sum_probs=247.4
Q ss_pred ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC---eeeEEEEeccCCCCEEEEEECCC----C---CeE
Q 042434 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS---KLTLKHTLRSHQNPVSFVAWSPD----D---TKL 282 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~---~~~~~~~~~~h~~~v~~l~~s~~----~---~~l 282 (517)
.....+.+|.+.|++++|+| ++|++|+.||.|++|++.++. .......+.+|...|.+++|+|+ + ++|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 45677889999999999999 799999999999999997664 11234667789999999999999 9 999
Q ss_pred EEEeCCCeEEEEECCCCcE-----EEEeCCC-----CCceEEEEEe----CCCCe-EEEeeCCCceeEEEEeCCC-----
Q 042434 283 LTCGNAEVLKLWDVETGIC-----KHTFGDH-----GFIVSSCAWF----PDSKR-LVCGSSDTEKGIFMCDCDG----- 342 (517)
Q Consensus 283 ~s~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~i~~~----~~~~~-l~~~~~d~~v~i~~~~~~~----- 342 (517)
++++.||.|++||+.+++. ...+..| ...|.+++|+ |++.+ |++++.||. |.+|+...
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT--TYIWKFHPFADES 162 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSC--EEEEEEESSSSHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCc--EEEEeCCcccccc
Confidence 9999999999999998887 8888888 5999999999 99999 999999999 55555543
Q ss_pred --CeeE-----eee------CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeec---c---CCCeeEEEE
Q 042434 343 --NEIK-----AWR------GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVIS---E---EHPITSLSV 401 (517)
Q Consensus 343 --~~~~-----~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~---~---~~~i~~~~~ 401 (517)
..+. .+. ..+...+.+++|+|++ .+++++.||.|++||+++.. ..... + ...+.+++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence 2222 332 3345689999999999 99999999999999999877 33334 5 889999999
Q ss_pred cCCCCEEEEEeCC---CeEEEEEcCCCCccceEEeC-------------cccCceEEEeecCCCCCcEEEEecCCCcEEE
Q 042434 402 SVDCKNFIVNLNS---QEIHMWDVAGKWEKPFKYTG-------------HSQNKYVIRSCFGGLDGTFIASGSENSQIYI 465 (517)
Q Consensus 402 s~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~-------------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 465 (517)
+|+++++++++.| +.|++||+++. .....+.+ |... +..+.|+|++++|++++.||.|++
T Consensus 242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 242 SPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSW---VMSLSFNDSGETLCSAGWDGKLRF 317 (397)
T ss_dssp CSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSC---EEEEEECSSSSEEEEEETTSEEEE
T ss_pred CCCCCEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCc---EEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999999999999 99999999876 56666666 5554 666677999999999999999999
Q ss_pred EecCCCceeEEec------CC---------------CCCeeEEEecCCCC---------cEEEEeeCCCcEEEeCCCCCC
Q 042434 466 WNRRNSKPIEILS------GH---------------SMTVNCVSWNPKRP---------KMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 466 wd~~~~~~~~~~~------~h---------------~~~v~~v~~~~~~~---------~~l~s~~~dg~v~iw~~~~~~ 515 (517)
||+.+++++..+. +| ...|++++|+|++. .+|++++.||.|++|++.+|+
T Consensus 318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 9999999999999 88 99999999999973 489999999999999998774
No 26
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.6e-40 Score=312.72 Aligned_cols=296 Identities=11% Similarity=0.182 Sum_probs=240.8
Q ss_pred ccEEEeccccCcEEEEEECCCCCEE-EEeeC---CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC---CCeEEEE
Q 042434 213 ETVQILTEHKNEVWFVQFSNNGEYL-ASSSS---DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD---DTKLLTC 285 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~~~l-~t~~~---dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~~l~s~ 285 (517)
.....+.+|.+.|++++|+|++..+ ++|+. ||.|++|++.++... . ....+|...|.+++|+|+ +++|+++
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~-~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK-L-LREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE-E-EEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc-c-eeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 3455668899999999999998655 56665 999999999866432 1 223368999999999998 6999999
Q ss_pred eCCCeEEEEECCCCc-EEEEeCCCCCceEEEEE------eCCCCeEEEeeCCCceeEEEEeCCCC--eeEeeeCcC---C
Q 042434 286 GNAEVLKLWDVETGI-CKHTFGDHGFIVSSCAW------FPDSKRLVCGSSDTEKGIFMCDCDGN--EIKAWRGTR---I 353 (517)
Q Consensus 286 ~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~------~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~---~ 353 (517)
+.||.|++||+.+++ .+..+..|...|.++.| +|++++|++++.|+. |.+||.... ....+..+. .
T Consensus 87 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~ 164 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT--VKVWDPRQKDDPVANMEPVQGENK 164 (357)
T ss_dssp ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC--EEEECTTSCSSCSEEECCCTTSCC
T ss_pred cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe--EEEEeCCCCCCcceeccccCCCCC
Confidence 999999999999988 88889999999999965 678999999999999 888888753 344443322 3
Q ss_pred CceEEEE----EccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcC---CCCEEEEEeCCCeEEEEEcCCC
Q 042434 354 PKVLDLA----VTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSV---DCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 354 ~~i~~~~----~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~---~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
..+.+++ |+|+++++++++.||.|++||+++.. .....+...+.+++|+| ++.++++++.||.|++||+++.
T Consensus 165 ~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 165 RDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244 (357)
T ss_dssp CCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred CceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence 3788888 78899999999999999999999988 55567788999999999 9999999999999999999765
Q ss_pred CccceEEe-----CcccCceEEEeecCCCCCc-EEEEecCCCcEEEEecCCC-------------------ceeEEecCC
Q 042434 426 WEKPFKYT-----GHSQNKYVIRSCFGGLDGT-FIASGSENSQIYIWNRRNS-------------------KPIEILSGH 480 (517)
Q Consensus 426 ~~~~~~~~-----~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~h 480 (517)
.....+. +|... +..+.++|+++ ++++|+.||.|++||+.++ +++..+.+|
T Consensus 245 -~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (357)
T 3i2n_A 245 -HPTKGFASVSEKAHKST---VWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS 320 (357)
T ss_dssp -ETTTEEEEEEEECCSSC---EEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC
T ss_pred -CcccceeeeccCCCcCC---EEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC
Confidence 3333333 56554 56666789998 8999999999999998754 467778899
Q ss_pred CCCeeEEEecCCCCcEEE-EeeCCCcEEEeCCCCCCCC
Q 042434 481 SMTVNCVSWNPKRPKMLA-SASDDHTIRIWGPCQSSEV 517 (517)
Q Consensus 481 ~~~v~~v~~~~~~~~~l~-s~~~dg~v~iw~~~~~~~v 517 (517)
...|++++|+|++. +|+ +++.||.|++|++.+.+.|
T Consensus 321 ~~~v~~~~~s~~~~-~l~~s~~~d~~i~iw~~~~~~~i 357 (357)
T 3i2n_A 321 TQPISSLDWSPDKR-GLCVCSSFDQTVRVLIVTKLNKI 357 (357)
T ss_dssp SSCEEEEEECSSST-TEEEEEETTSEEEEEEECC----
T ss_pred CCCeeEEEEcCCCC-eEEEEecCCCcEEEEECCCcccC
Confidence 99999999999994 565 8999999999999987654
No 27
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.6e-40 Score=324.45 Aligned_cols=294 Identities=17% Similarity=0.224 Sum_probs=231.8
Q ss_pred EEEeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC-CCCeEEEEeCCCeEE
Q 042434 215 VQILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAEVLK 292 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~ 292 (517)
.....+|...|+|++|+| ++++||+|+.||.|+|||+.++.. .....+.+|.+.|++++|+| ++++|++|+.||+|+
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 445678999999999999 677999999999999999976543 34455678999999999998 689999999999999
Q ss_pred EEECCCCcEEEEeC--CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCC-EEE
Q 042434 293 LWDVETGICKHTFG--DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGE-NLI 369 (517)
Q Consensus 293 iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~ 369 (517)
+||++++....... .+...+.+++|+|++.+|++|+.||. |.+||..+..+..+..+. ..|.+++|+|++. +++
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~--i~~wd~~~~~~~~~~~h~-~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGN--VILLNMDGKELWNLRMHK-KKVTHVALNPCCDWFLA 267 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSB--EEEEESSSCBCCCSBCCS-SCEEEEEECTTCSSEEE
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCc--EeeeccCcceeEEEeccc-ceEEeeeecCCCceEEE
Confidence 99998765544333 33556789999999999999999999 888899887776666544 5899999999886 788
Q ss_pred EEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC----ce
Q 042434 370 SVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN----KY 440 (517)
Q Consensus 370 ~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~----~~ 440 (517)
+++.|+.|++||+++.. .....|...|.+++|+|++.+|++++.|+.|++||+.+. .....+..|... ..
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~ 346 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW-DCPLGLIPHPHRHFQHLT 346 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS-SSEEEECCCCCCCCSSSC
T ss_pred EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC-ccceEEecccccccccce
Confidence 99999999999998765 223457889999999999999999999999999999876 444444433321 11
Q ss_pred EEEeecCCCCCcEEEEec------------CCCcEEEEecCCCceeEEec-CCCCCeeEE-EecCCCCcEEEEeeCCCcE
Q 042434 441 VIRSCFGGLDGTFIASGS------------ENSQIYIWNRRNSKPIEILS-GHSMTVNCV-SWNPKRPKMLASASDDHTI 506 (517)
Q Consensus 441 ~i~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~-~h~~~v~~v-~~~~~~~~~l~s~~~dg~v 506 (517)
.+.. .++|++.++++++ .++.|++||..+++.+..+. +|...|.++ +|+|+| .+|++|+ |+.|
T Consensus 347 ~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg-~~lasg~-d~~i 423 (435)
T 4e54_B 347 PIKA-AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG-DTLASAM-GYHI 423 (435)
T ss_dssp CCBC-EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS-SCEEEEC-SSEE
T ss_pred eEEE-EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC-CEEEEEc-CCcE
Confidence 1222 2355555555543 34679999999999988875 688889888 699999 6888776 7899
Q ss_pred EEeCCCCCCC
Q 042434 507 RIWGPCQSSE 516 (517)
Q Consensus 507 ~iw~~~~~~~ 516 (517)
+||++++++.
T Consensus 424 ~iW~~~~gk~ 433 (435)
T 4e54_B 424 LIWSQQEART 433 (435)
T ss_dssp EECCCC----
T ss_pred EEEECCcCee
Confidence 9999998864
No 28
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-39 Score=301.41 Aligned_cols=287 Identities=18% Similarity=0.208 Sum_probs=248.1
Q ss_pred cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL 291 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 291 (517)
.+....+.+|.+.|++++| |++++|++|+.||.|++||+.++ .....+..|...|.+++|+|++++|++++.||.|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ---WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS---EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC---EEEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence 4678899999999999999 99999999999999999999654 4556777899999999999999999999999999
Q ss_pred EEEECCCC---cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc-CCCE
Q 042434 292 KLWDVETG---ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP-DGEN 367 (517)
Q Consensus 292 ~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 367 (517)
++|++.+. +....+..|...|.+++| +++.+++++.|+. +.+|+ .+.....+.. +...+.++.+.| +++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~--i~~~d-~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 157 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKT--AKVWK-EGSLVYNLQA-HNASVWDAKVVSFSENK 157 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSE--EEEEE-TTEEEEEEEC-CSSCEEEEEEEETTTTE
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCC--EEEEc-CCcEEEeccc-CCCceeEEEEccCCCCE
Confidence 99998654 567778899999999999 5779999999999 77777 4444444444 446899999988 8999
Q ss_pred EEEEeCCCcEEEEECCCceEEeec-cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeec
Q 042434 368 LISVLSDKDIRILNLGTYAERVIS-EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCF 446 (517)
Q Consensus 368 l~~~~~dg~i~i~d~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~ 446 (517)
+++++.||.|++||.......... +...+.+++|+|++. +++++.|+.|++||+++. .....+.+|... +..+.
T Consensus 158 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~---i~~~~ 232 (313)
T 3odt_A 158 FLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG-DVLRTYEGHESF---VYCIK 232 (313)
T ss_dssp EEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC-CEEEEEECCSSC---EEEEE
T ss_pred EEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch-hhhhhhhcCCce---EEEEE
Confidence 999999999999996555444444 888999999999998 999999999999999877 667777777765 55666
Q ss_pred CCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 447 GGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 447 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
++|++ .+++++.||.|++||+.+++++..+..|...|.+++|+|++ . +++++.||.|++|++.+++.
T Consensus 233 ~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 233 LLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNG-D-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp ECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTS-C-EEEEETTSCEEEEESCGGGC
T ss_pred EecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCC-C-EEEEeCCCcEEEEeCCCCce
Confidence 78999 58899999999999999999999999999999999999999 4 66799999999999987653
No 29
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.3e-39 Score=310.36 Aligned_cols=290 Identities=15% Similarity=0.260 Sum_probs=240.1
Q ss_pred EEeccccCcEEEEEECCC----CCEEEEeeCCCcEEEEEecCCCeeeEEEEec--cCCCCEEEEEECCC----CCeEEEE
Q 042434 216 QILTEHKNEVWFVQFSNN----GEYLASSSSDCSAIIWKVLEDSKLTLKHTLR--SHQNPVSFVAWSPD----DTKLLTC 285 (517)
Q Consensus 216 ~~l~~h~~~v~~~~~s~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~--~h~~~v~~l~~s~~----~~~l~s~ 285 (517)
....+|.++|++++|+|+ ...+++++.++.|++|++.++.......... .|...|.+++|+|+ +.+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 345689999999999984 4566666677899999998665554444333 37789999999998 6799999
Q ss_pred eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCCeeEeee---CcCCCceEEEEE
Q 042434 286 GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGNEIKAWR---GTRIPKVLDLAV 361 (517)
Q Consensus 286 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~---~~~~~~i~~~~~ 361 (517)
+.||.|++||+.+++.+..+..|...|.+++|+| ++.+|++++.||. |.+||.......... ..+...|.+++|
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHA--LRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSC--EEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCe--EEEEEeecCeEEEEecccccccCceeEEEE
Confidence 9999999999999999999999999999999999 8999999999999 888898865544443 455678999999
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCceE--Ee----------------------------eccCCCeeEEEEcCCCCEEEEE
Q 042434 362 TPDGENLISVLSDKDIRILNLGTYAE--RV----------------------------ISEEHPITSLSVSVDCKNFIVN 411 (517)
Q Consensus 362 ~~~~~~l~~~~~dg~i~i~d~~~~~~--~~----------------------------~~~~~~i~~~~~s~~~~~l~~~ 411 (517)
+|+++++++++.||.|++||+++... .. ..+...+.+++|+ +++++++
T Consensus 170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 247 (366)
T 3k26_A 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK 247 (366)
T ss_dssp CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence 99999999999999999999987651 11 1177889999998 7799999
Q ss_pred eCCCeEEEEEcCCCCc-------------cceEEeCcccCceEEEeecCCCC--CcEEEEecCCCcEEEEecCCCce---
Q 042434 412 LNSQEIHMWDVAGKWE-------------KPFKYTGHSQNKYVIRSCFGGLD--GTFIASGSENSQIYIWNRRNSKP--- 473 (517)
Q Consensus 412 ~~d~~i~~~d~~~~~~-------------~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~--- 473 (517)
+.|+.|++||+.+... ....+.+|... +..+.++|+ +++|++|+.||.|++||+.++++
T Consensus 248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 324 (366)
T 3k26_A 248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD---IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA 324 (366)
T ss_dssp CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC---SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC
T ss_pred ecCCEEEEEeCCCccccccccccCCcchheeccccccCCc---EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc
Confidence 9999999999976532 13344444443 556667888 99999999999999999998864
Q ss_pred -eEEecCC--CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 474 -IEILSGH--SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 474 -~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
...+.+| ...|++++|+|++ .+|++++.||.|++||+.+
T Consensus 325 ~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 325 KCTTLTHHKCGAAIRQTSFSRDS-SILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEEC--
T ss_pred cceEEcccccCCceEEEEeCCCC-CeEEEEeCCCEEEEEEecC
Confidence 3477777 7999999999999 7999999999999999863
No 30
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.3e-40 Score=315.16 Aligned_cols=292 Identities=16% Similarity=0.180 Sum_probs=242.0
Q ss_pred EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434 217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV 296 (517)
Q Consensus 217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 296 (517)
.+..|.++|++++|+|++++|++|+.||.|++|++.++. ......+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 345699999999999999999999999999999997552 3466788899999999999999999999999999999999
Q ss_pred CCCcEEEE--eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC--eeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434 297 ETGICKHT--FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN--EIKAWRGTRIPKVLDLAVTPDGENLISVL 372 (517)
Q Consensus 297 ~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 372 (517)
.+++.... +..|...|.+++|+|+++++++++.|+.+.+|.++.... ........+...|.+++|+|+++++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 98875544 357899999999999999999999999955555554432 23444455567899999999999999999
Q ss_pred CCCcEEEEECC------------------Cce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEE
Q 042434 373 SDKDIRILNLG------------------TYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKY 432 (517)
Q Consensus 373 ~dg~i~i~d~~------------------~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 432 (517)
.||.|++||++ ... .....+...+.+++|+|+++++++++.|+.|++||+++. .....+
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~ 240 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK-MAVATL 240 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-TEEEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceeEEE
Confidence 99999999964 333 334467788999999999999999999999999999876 566677
Q ss_pred eCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC--Cce--------------------------------e----
Q 042434 433 TGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN--SKP--------------------------------I---- 474 (517)
Q Consensus 433 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~--------------------------------~---- 474 (517)
..|... +..+.++|++.++++| .||.|++|++.+ ++. .
T Consensus 241 ~~~~~~---v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (372)
T 1k8k_C 241 ASETLP---LLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA 316 (372)
T ss_dssp ECSSCC---EEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-------
T ss_pred ccCCCC---eEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcc
Confidence 776654 5566678999999888 899999999987 421 0
Q ss_pred --EEe-cCCCCCeeEEEecCCCC---cEEEEeeCCCcEEEeCCCCC
Q 042434 475 --EIL-SGHSMTVNCVSWNPKRP---KMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 475 --~~~-~~h~~~v~~v~~~~~~~---~~l~s~~~dg~v~iw~~~~~ 514 (517)
..+ .+|.+.|++++|++... .+|+||+.||.|++|++.++
T Consensus 317 ~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 317 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp --CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred ccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 223 48999999999875543 59999999999999998654
No 31
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-39 Score=315.85 Aligned_cols=380 Identities=20% Similarity=0.300 Sum_probs=243.9
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHHHHHHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhh
Q 042434 15 KKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCF 94 (517)
Q Consensus 15 ~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (517)
-++|++|+|+|||+|+||.+++++|++|+|++++. ....+...++++.|+.++.+-+.+
T Consensus 7 q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~w~~~~~l~~~~-------------------- 65 (410)
T 1vyh_C 7 QRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNE-ELDKKYAGLLEKKWTSVIRLQKKV-------------------- 65 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCc-chhhhhhchhhhhhhheeeHHHHH--------------------
Confidence 57899999999999999999999999999998765 345667778899999877543222
Q ss_pred hHhhhcCChhHHHHHHHhhcccCCCChhHHhhhhhccccccccccccCCcchhhhHHHHHHHHHHHhCCCCCCCCcchHH
Q 042434 95 LEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLCLEGMNLGKIDEGVVLELRKRLLVELERLLPPPEVVPERRLE 174 (517)
Q Consensus 95 ~el~~~~~~~~a~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~rl~ 174 (517)
.++... ..+ ++.++.... ..+.. .......|... ....+
T Consensus 66 ~~~~~~--~~~----~~~~~~~~~------------------------------~~~~~--~~~~~~~~~~~--~~~~l- 104 (410)
T 1vyh_C 66 MELESK--LNE----AKEEFTSGG------------------------------PLGQK--RDPKEWIPRPP--EKYAL- 104 (410)
T ss_dssp ----------------------------------------------------------------CCCCCCSS--CSCEE-
T ss_pred HHHHHH--HHH----HHHHHhccC------------------------------Ccccc--CCccccccCCC--ceEee-
Confidence 111000 000 000000000 00000 00001111110 00000
Q ss_pred HHHHHHHHhccccccCCCCCc-cccccCC-CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEec
Q 042434 175 HLVETAVTSQIDSCQYHNSSV-AISLYED-HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL 252 (517)
Q Consensus 175 ~l~~~~~~~q~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~ 252 (517)
..+...+.++.|++... .++...| ....|+....+....+.+|.+.|++++|+|+|++|++|+.||+|++||+.
T Consensus 105 ----~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 105 ----SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp ----ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred ----cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 12345667777877655 4444444 45567777788899999999999999999999999999999999999996
Q ss_pred CCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc
Q 042434 253 EDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332 (517)
Q Consensus 253 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~ 332 (517)
+. ....++.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+.+|...|.++.|+|++.++++|+.|+.
T Consensus 181 ~~---~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 181 GF---ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp SS---CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CC---ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence 54 556788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCCCCeeEeeeCcCCCceEEEEEccC--------------------CCEEEEEeCCCcEEEEECCCce--EEee
Q 042434 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD--------------------GENLISVLSDKDIRILNLGTYA--ERVI 390 (517)
Q Consensus 333 v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~--~~~~ 390 (517)
|.+|+............+...|.+++|+|+ +.++++|+.|+.|++||++++. ....
T Consensus 258 --v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~ 335 (410)
T 1vyh_C 258 --VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 335 (410)
T ss_dssp --EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred --EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE
Confidence 888888765554444455568999999996 6789999999999999999887 4555
Q ss_pred ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 391 SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 391 ~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
.|...|.+++|+|+++++++++.|+.|++||+.+. .....+.+|... +.++.|+|++.+|++|+.||+|++|+++
T Consensus 336 ~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~h~~~---v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHF---VTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEECCSSC---EEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEcCCCCc---EEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 68889999999999999999999999999999776 667788888766 6666779999999999999999999863
No 32
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-39 Score=314.91 Aligned_cols=316 Identities=16% Similarity=0.159 Sum_probs=258.6
Q ss_pred ccccccCCCCCc--cccccC-CCcccccC----CCcc------cEEEecc----------ccCcEEEEEECCCCCEEEEe
Q 042434 184 QIDSCQYHNSSV--AISLYE-DHCCGRDQ----IPTE------TVQILTE----------HKNEVWFVQFSNNGEYLASS 240 (517)
Q Consensus 184 q~~~~~~~~~~~--~~~~~~-~~~~~~~~----~~~~------~~~~l~~----------h~~~v~~~~~s~~~~~l~t~ 240 (517)
.+.++.+++... .+.... +....|+. ...+ ....+.. |.+.|++++|+|++++|++|
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence 455666666544 223333 33445554 3444 3444444 78899999999999999999
Q ss_pred eCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCc---------
Q 042434 241 SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFI--------- 311 (517)
Q Consensus 241 ~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------- 311 (517)
+.||.|++|+. ++ .....+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+...
T Consensus 127 ~~dg~i~i~~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (425)
T 1r5m_A 127 VENGELRLWNK-TG---ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202 (425)
T ss_dssp ETTSCEEEEET-TS---CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------------
T ss_pred eCCCeEEEEeC-CC---CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccc
Confidence 99999999993 33 455678899999999999999999999999999999999999999998877766
Q ss_pred ------eEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCc
Q 042434 312 ------VSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTY 385 (517)
Q Consensus 312 ------v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 385 (517)
+.+++|+|++ .+++++.+|. +++|+............+...|.+++|+|+++++++++.|+.|++||+++.
T Consensus 203 ~~~~~~~~~~~~~~~~-~~~~~~~~g~--i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 203 SGDGSLGVDVEWVDDD-KFVIPGPKGA--IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp ---CCCBSCCEEEETT-EEEEECGGGC--EEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred cCCcceeeEEEEcCCC-EEEEEcCCCe--EEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 9999999875 5888899998 888898865444333445568999999999999999999999999999887
Q ss_pred e--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcE
Q 042434 386 A--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI 463 (517)
Q Consensus 386 ~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 463 (517)
. .....+...+.+++|+|++ .+++++.|+.|++||+++. .....+..|... +..+.++|++++|++++.||.|
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~---i~~~~~s~~~~~l~~~~~dg~i 354 (425)
T 1r5m_A 280 NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVP---IFAGRISQDGQKYAVAFMDGQV 354 (425)
T ss_dssp SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCC---EEEEEECTTSSEEEEEETTSCE
T ss_pred ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-cEeEecccCCcc---EEEEEEcCCCCEEEEEECCCeE
Confidence 6 4455678899999999999 9999999999999999876 566666666654 5566679999999999999999
Q ss_pred EEEecCCCc--------------------eeEEecCCCC--CeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 464 YIWNRRNSK--------------------PIEILSGHSM--TVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 464 ~iwd~~~~~--------------------~~~~~~~h~~--~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
++||+.+++ ++..+.+|.. .|++++|+|++ .+|++++.||.|++|+++
T Consensus 355 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 355 NVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG-NKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS-SEEEEEESSSCCEEEECC
T ss_pred EEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC-ceEEEEecCceEEEEeec
Confidence 999999888 8999999976 99999999999 699999999999999986
No 33
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-39 Score=318.26 Aligned_cols=323 Identities=14% Similarity=0.145 Sum_probs=258.2
Q ss_pred ccccccCCCCCc--cccc----------cCCC-cccccCCCcc---cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEE
Q 042434 184 QIDSCQYHNSSV--AISL----------YEDH-CCGRDQIPTE---TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAI 247 (517)
Q Consensus 184 q~~~~~~~~~~~--~~~~----------~~~~-~~~~~~~~~~---~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~ 247 (517)
.+..+.+++... .+.. ..+. ...|+..... ++..+ .|.+.|++++|+|++++|++|+.||.|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 455667776643 2222 3333 4444444333 33333 5999999999999999999999999999
Q ss_pred EEEecCCCe-eeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCCCc------EEEE---eCCCCCceEEEE
Q 042434 248 IWKVLEDSK-LTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGI------CKHT---FGDHGFIVSSCA 316 (517)
Q Consensus 248 iw~~~~~~~-~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~------~~~~---~~~~~~~v~~i~ 316 (517)
+|++..... ......+.+|...|.+++|+|+ +++|++++.||.|++||+.+++ .... +..|...|.+++
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 172 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA 172 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence 999975211 2366788899999999999998 8999999999999999999886 3322 357889999999
Q ss_pred EeCC-CCeEEEeeCCCceeEEEEeCCCCee-EeeeCcC-----CCceEEEEEccCC-CEEEEEeCCC---cEEEEECCCc
Q 042434 317 WFPD-SKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTR-----IPKVLDLAVTPDG-ENLISVLSDK---DIRILNLGTY 385 (517)
Q Consensus 317 ~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~-----~~~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~ 385 (517)
|+|+ +.++++++.|+. |.+||...... ..+..+. ...+.+++|+|++ ..+++++.|+ .|++||+++.
T Consensus 173 ~~~~~~~~l~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 173 WNQSLAHVFASAGSSNF--ASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp ECSSCTTEEEEESSSSC--EEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST
T ss_pred eCCCCCcEEEEEcCCCC--EEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC
Confidence 9999 789999999999 88899876544 3333332 5689999999997 6899999998 9999999985
Q ss_pred e---EEee-ccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCC-cEEEEecC
Q 042434 386 A---ERVI-SEEHPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG-TFIASGSE 459 (517)
Q Consensus 386 ~---~~~~-~~~~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~ 459 (517)
. .... .+...+.+++|+| +++++++++.|+.|++||+++. .....+.+|... +..+.|+|++ .++++++.
T Consensus 251 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~---v~~~~~s~~~~~~l~s~~~ 326 (416)
T 2pm9_A 251 NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-EQLSQFPARGNW---CFKTKFAPEAPDLFACASF 326 (416)
T ss_dssp TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC-CEEEEEECSSSC---CCCEEECTTCTTEEEECCS
T ss_pred CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC-ccceeecCCCCc---eEEEEECCCCCCEEEEEec
Confidence 3 3333 5788999999999 9999999999999999999887 667777777765 4556668998 89999999
Q ss_pred CCcEEEEecCCCceeEEec-----------------------------------CCCCCeeEEEecCCCCcEEEEeeCCC
Q 042434 460 NSQIYIWNRRNSKPIEILS-----------------------------------GHSMTVNCVSWNPKRPKMLASASDDH 504 (517)
Q Consensus 460 dg~i~iwd~~~~~~~~~~~-----------------------------------~h~~~v~~v~~~~~~~~~l~s~~~dg 504 (517)
||.|++||+.++....... .|..++++++|+|+| .+|++++.||
T Consensus 327 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~la~~~~d~ 405 (416)
T 2pm9_A 327 DNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGG-KLVQITPDGK 405 (416)
T ss_dssp SSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTT-EEECBCTTSS
T ss_pred CCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCC-eEEEEeCCCC
Confidence 9999999998775433221 167788899999999 8999999999
Q ss_pred cEEEeCCCCC
Q 042434 505 TIRIWGPCQS 514 (517)
Q Consensus 505 ~v~iw~~~~~ 514 (517)
.|+||++.++
T Consensus 406 ~v~~w~~~~~ 415 (416)
T 2pm9_A 406 GVSITNPKIS 415 (416)
T ss_dssp CBCCBCCCCC
T ss_pred eEEEEEeccC
Confidence 9999999875
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-39 Score=318.25 Aligned_cols=289 Identities=16% Similarity=0.214 Sum_probs=244.9
Q ss_pred ccCcEEEEEECCCCC-EEEEe----------eCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434 221 HKNEVWFVQFSNNGE-YLASS----------SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE 289 (517)
Q Consensus 221 h~~~v~~~~~s~~~~-~l~t~----------~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 289 (517)
+...|.+++|+|+|+ +|++| +.||.|+||++.++........ ..|...|.+++|+|++++|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCC
Confidence 445788999999987 99999 8899999999976543222232 35889999999999999999999999
Q ss_pred eEEEEECCC----CcEEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCe-------eEee--eCcCCCc
Q 042434 290 VLKLWDVET----GICKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNE-------IKAW--RGTRIPK 355 (517)
Q Consensus 290 ~i~iwd~~~----~~~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~-------~~~~--~~~~~~~ 355 (517)
.|++||+.+ .+....+..|...|.+++|+|+ +.+|++++.|+. |.+||..... .... ...+...
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGE--IFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSC--EEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCe--EEEEECCCCccccccccccccccccCCCCC
Confidence 999999987 4588888899999999999998 899999999999 8888887543 1111 2345568
Q ss_pred eEEEEEccC-CCEEEEEeCCCcEEEEECCCce-E-Eeecc------CCCeeEEEEcCCC-CEEEEEeCCC---eEEEEEc
Q 042434 356 VLDLAVTPD-GENLISVLSDKDIRILNLGTYA-E-RVISE------EHPITSLSVSVDC-KNFIVNLNSQ---EIHMWDV 422 (517)
Q Consensus 356 i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~-~~~~~------~~~i~~~~~s~~~-~~l~~~~~d~---~i~~~d~ 422 (517)
|.+++|+|+ +..+++++.||.|++||+++.. . ....+ ...+.+++|+|++ ..+++++.++ .|++||+
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 999999999 7899999999999999999877 2 22222 6789999999997 6899999998 9999999
Q ss_pred CCCCccceEEe-CcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEe
Q 042434 423 AGKWEKPFKYT-GHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASA 500 (517)
Q Consensus 423 ~~~~~~~~~~~-~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~ 500 (517)
++.......+. +|... +..+.|+| ++++|++++.||.|++||+.+++++..+.+|...|++++|+|+++.+|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~ 324 (416)
T 2pm9_A 248 RNANTPLQTLNQGHQKG---ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACA 324 (416)
T ss_dssp TSTTSCSBCCCSCCSSC---EEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEEC
T ss_pred CCCCCCcEEeecCccCc---eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEE
Confidence 87645566666 66655 55666688 999999999999999999999999999999999999999999986799999
Q ss_pred eCCCcEEEeCCCCCC
Q 042434 501 SDDHTIRIWGPCQSS 515 (517)
Q Consensus 501 ~~dg~v~iw~~~~~~ 515 (517)
+.||.|++|++.+++
T Consensus 325 ~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 325 SFDNKIEVQTLQNLT 339 (416)
T ss_dssp CSSSEEEEEESCCCC
T ss_pred ecCCcEEEEEccCCC
Confidence 999999999998765
No 35
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.5e-38 Score=297.47 Aligned_cols=279 Identities=21% Similarity=0.294 Sum_probs=235.9
Q ss_pred HhccccccCCCCCc-cccccCC-CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC-eee
Q 042434 182 TSQIDSCQYHNSSV-AISLYED-HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS-KLT 258 (517)
Q Consensus 182 ~~q~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~ 258 (517)
...+..+.+.++.. .++...| ....|+......+..+..|...|.+++|+|+|++|++|+.|+.|++|++.+.. ...
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~ 134 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR 134 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCE
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcce
Confidence 34556666766654 3444444 45567777788899999999999999999999999999999999999997543 234
Q ss_pred EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEE
Q 042434 259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMC 338 (517)
Q Consensus 259 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~ 338 (517)
....+.+|.+.|.++.|++++. +++++.|++|++||+.+++++..+.+|...|.+++|+|+++++++|+.|+. |.+|
T Consensus 135 ~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~--v~~w 211 (340)
T 1got_B 135 VSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS--AKLW 211 (340)
T ss_dssp EEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC--EEEE
T ss_pred eEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCc--EEEE
Confidence 5677889999999999998775 889999999999999999999999999999999999999999999999999 8888
Q ss_pred eCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeecc---CCCeeEEEEcCCCCEEEEEeCC
Q 042434 339 DCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISE---EHPITSLSVSVDCKNFIVNLNS 414 (517)
Q Consensus 339 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~---~~~i~~~~~s~~~~~l~~~~~d 414 (517)
|............+...|.+++|+|+++++++++.||.|++||+++.. .....+ ...+.+++|+|+++++++++.|
T Consensus 212 d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d 291 (340)
T 1got_B 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291 (340)
T ss_dssp ETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCC
Confidence 987655444444455689999999999999999999999999999876 233332 2369999999999999999999
Q ss_pred CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN 467 (517)
Q Consensus 415 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 467 (517)
+.|++||+.+. .....+.+|... +.++.++|+|.+|++|+.||.|++||
T Consensus 292 ~~i~vwd~~~~-~~~~~~~~h~~~---v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 292 FNCNVWDALKA-DRAGVLAGHDNR---VSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SEEEEEETTTC-CEEEEEECCSSC---EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CeEEEEEcccC-cEeeEeecCCCc---EEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999876 666778888776 56667799999999999999999997
No 36
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.7e-37 Score=303.06 Aligned_cols=278 Identities=22% Similarity=0.312 Sum_probs=230.7
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEE
Q 042434 224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH 303 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 303 (517)
.++.++||++ ++||+|. |++|+|||..++... ....+.+|...|++++|+|+|++|++|+.||+|++||+.+++++.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-EEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-EEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 4678999976 5787775 899999999877433 333456788899999999999999999999999999999999999
Q ss_pred EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEE
Q 042434 304 TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILN 381 (517)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 381 (517)
.+.+|...+.+++|+ +..+++|+.|+. ++.|+... ..+..+.. +...+..+.++|+++.+++++.|+.+++||
T Consensus 184 ~~~~h~~~v~~~s~~--~~~l~sgs~d~~--i~~~d~~~~~~~~~~~~~-h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~ 258 (420)
T 4gga_A 184 NMTSHSARVGSLSWN--SYILSSGSRSGH--IHHHDVRVAEHHVATLSG-HSQEVCGLRWAPDGRHLASGGNDNLVNVWP 258 (420)
T ss_dssp EECCCSSCEEEEEEE--TTEEEEEETTSE--EEEEETTSSSCEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEeCCCCceEEEeeC--CCEEEEEeCCCc--eeEeeecccceeeEEecc-cccceeeeeecCCCCeeeeeeccccceEEe
Confidence 999999999998875 679999999999 77777663 33444444 446899999999999999999999999999
Q ss_pred CCCce------EEeeccCCCeeEEEEcCCCCE-EEE--EeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc
Q 042434 382 LGTYA------ERVISEEHPITSLSVSVDCKN-FIV--NLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT 452 (517)
Q Consensus 382 ~~~~~------~~~~~~~~~i~~~~~s~~~~~-l~~--~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 452 (517)
..+.. .....+...|.+++|+|.+.. +++ |+.|+.|++||+.++ .....+..+.. +..+.++++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~~~~~~~~~----v~~~~~~~~~~ 333 (420)
T 4gga_A 259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAHSQ----VCSILWSPHYK 333 (420)
T ss_dssp SSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEEEEEECSSC----EEEEEEETTTT
T ss_pred eccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-ccceeeccccc----eeeeeecCCCC
Confidence 98754 345567788999999997654 444 357999999999887 55555555443 44455578888
Q ss_pred EEEEec--CCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 453 FIASGS--ENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 453 ~l~~~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
.+++++ .||.|++||+.+++++.++.+|.+.|++++|+|+| .+|+|||.||+|+|||+....
T Consensus 334 ~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg-~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 334 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSCSS
T ss_pred eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCCCC
Confidence 887654 79999999999999999999999999999999999 799999999999999987643
No 37
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-39 Score=314.05 Aligned_cols=297 Identities=12% Similarity=0.164 Sum_probs=238.6
Q ss_pred cCCCcccEEEe-ccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecC---CCeeeEEEEeccCCCCEEEEEECCCCCeE
Q 042434 208 DQIPTETVQIL-TEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLE---DSKLTLKHTLRSHQNPVSFVAWSPDDTKL 282 (517)
Q Consensus 208 ~~~~~~~~~~l-~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~---~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 282 (517)
+....+.+..+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +........+ .|...|.+++|+|++++|
T Consensus 48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l 126 (437)
T 3gre_A 48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAF 126 (437)
T ss_dssp GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEE
T ss_pred ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEE
Confidence 45667888888 89999999999999 999999999999999999975 3222222333 499999999999999999
Q ss_pred EEEeCCCeEEEEECC---CCcEEEEeC----------C--CCCceEEEE--EeCCCCeEEEeeCCCceeEEEEeCCC-Ce
Q 042434 283 LTCGNAEVLKLWDVE---TGICKHTFG----------D--HGFIVSSCA--WFPDSKRLVCGSSDTEKGIFMCDCDG-NE 344 (517)
Q Consensus 283 ~s~~~dg~i~iwd~~---~~~~~~~~~----------~--~~~~v~~i~--~~~~~~~l~~~~~d~~v~i~~~~~~~-~~ 344 (517)
++++.||+|++||+. +++....+. . +...+.++. +++++.++++++.|+. |.+||... ..
T Consensus 127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~--i~iwd~~~~~~ 204 (437)
T 3gre_A 127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSR--VIIFDIRTLER 204 (437)
T ss_dssp EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSE--EEEEETTTCCE
T ss_pred EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCe--EEEEeCCCCee
Confidence 999999999999994 555544332 2 556677776 5678999999999999 88899875 44
Q ss_pred eEeeeCc-CCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE-Ee--eccCCCeeEEEEc----CCCCEEEEEeCCCe
Q 042434 345 IKAWRGT-RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE-RV--ISEEHPITSLSVS----VDCKNFIVNLNSQE 416 (517)
Q Consensus 345 ~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~--~~~~~~i~~~~~s----~~~~~l~~~~~d~~ 416 (517)
+..+... +...|.+++|+|+++++++++.||.|++||++++.. .. ..+..+|.+++++ |++.++++++.|+.
T Consensus 205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~ 284 (437)
T 3gre_A 205 LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF 284 (437)
T ss_dssp EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence 4555553 556899999999999999999999999999998772 22 2566789999665 46789999999999
Q ss_pred EEEEEcCCCCccceEEeCcccC-----------------------ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce
Q 042434 417 IHMWDVAGKWEKPFKYTGHSQN-----------------------KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP 473 (517)
Q Consensus 417 i~~~d~~~~~~~~~~~~~~~~~-----------------------~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 473 (517)
|++||++++ .....+.++... ...+.++.++ ++++|++|+.||.|++||+.+++.
T Consensus 285 i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 285 LTIWNFVKG-HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp EEEEETTTT-EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred EEEEEcCCC-cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence 999999876 555555544321 1113344456 678999999999999999999988
Q ss_pred eEEecC-------------------------------------CCCCeeEEEecCC--CCcEEEEeeCCCcEEEeC
Q 042434 474 IEILSG-------------------------------------HSMTVNCVSWNPK--RPKMLASASDDHTIRIWG 510 (517)
Q Consensus 474 ~~~~~~-------------------------------------h~~~v~~v~~~~~--~~~~l~s~~~dg~v~iw~ 510 (517)
...+.+ |...|++++|+++ + .+|++|+.||.|+||+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~-~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 363 SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDET-PLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSS-EEEEEEETTSCEEEEC
T ss_pred ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCc-eEEEEEcCCceEEEeC
Confidence 877765 8899999999998 5 7999999999999995
No 38
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=302.78 Aligned_cols=300 Identities=17% Similarity=0.260 Sum_probs=240.8
Q ss_pred cccEEEeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEe----------ccCCCCEEEEEECC-CC
Q 042434 212 TETVQILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTL----------RSHQNPVSFVAWSP-DD 279 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~----------~~h~~~v~~l~~s~-~~ 279 (517)
.+....+.+|.+.|++++|+| ++++|++|+.||.|++|++.++......... .+|...|.+++|+| ++
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence 566778889999999999999 9999999999999999999765443222111 25999999999999 77
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC---CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCce
Q 042434 280 TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD---SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKV 356 (517)
Q Consensus 280 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i 356 (517)
.+|++++.||.|++||+.+++....+. +...+.++.|+|. +.++++++.++. +.+|+............+...|
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~d~~~~~~~~~~~~~~~~v 189 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPK--VQLCDLKSGSCSHILQGHRQEI 189 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSS--EEEEESSSSCCCEEECCCCSCE
T ss_pred cEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCe--EEEEeCCCcceeeeecCCCCcE
Confidence 899999999999999999999888874 7788999999985 449999999999 8888887544433334455689
Q ss_pred EEEEEccCCC-EEEEEeCCCcEEEEECCCce---EEe---------------eccCCCeeEEEEcCCCCEEEEEeCCCeE
Q 042434 357 LDLAVTPDGE-NLISVLSDKDIRILNLGTYA---ERV---------------ISEEHPITSLSVSVDCKNFIVNLNSQEI 417 (517)
Q Consensus 357 ~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~---~~~---------------~~~~~~i~~~~~s~~~~~l~~~~~d~~i 417 (517)
.+++|+|+++ .+++++.||.|++||+++.. ... ..+...+.+++|+|+++++++++.|+.|
T Consensus 190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 269 (408)
T 4a11_B 190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269 (408)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE
Confidence 9999999998 58899999999999997754 111 3567789999999999999999999999
Q ss_pred EEEEcCCCCccceEEeCccc--CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCc
Q 042434 418 HMWDVAGKWEKPFKYTGHSQ--NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPK 495 (517)
Q Consensus 418 ~~~d~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 495 (517)
++||+.+... ......+.. .............+..+++++.|+.|++||+.+++++..+.+|.+.|++++|+|++ .
T Consensus 270 ~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~ 347 (408)
T 4a11_B 270 RLWNSSNGEN-TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF-Q 347 (408)
T ss_dssp EEEETTTCCB-CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT-T
T ss_pred EEEECCCCcc-ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC-C
Confidence 9999987632 222221111 11111122223445567777889999999999999999999999999999999999 7
Q ss_pred EEEEeeCCCcEEEeCCCCCCC
Q 042434 496 MLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 496 ~l~s~~~dg~v~iw~~~~~~~ 516 (517)
+|++++.||.|++|++.++++
T Consensus 348 ~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 348 ELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp EEEEEETTSCEEEEEECC---
T ss_pred EEEEECCCCeEEEEeCCCCCc
Confidence 999999999999999988764
No 39
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-39 Score=311.39 Aligned_cols=288 Identities=13% Similarity=0.180 Sum_probs=227.4
Q ss_pred EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434 217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV 296 (517)
Q Consensus 217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 296 (517)
.+..|.++|++++|+|+|++||+|+.||.|++|++.++ .......+.+|...|.+++|+|++++|++++.||+|++||+
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGN-GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETT-EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCC-ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 44557889999999999999999999999999999754 22455678899999999999999999999999999999999
Q ss_pred CCCc---EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe----eEeeeCcCCCceEEEEEccCCCEEE
Q 042434 297 ETGI---CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE----IKAWRGTRIPKVLDLAVTPDGENLI 369 (517)
Q Consensus 297 ~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~ 369 (517)
.+++ ....+..|...|.+++|+|++++|++++.|+. |.+|+..... ...+...+...|.+++|+|++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 162 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARV--ISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA 162 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSC--EEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCe--EEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence 9887 67778899999999999999999999999999 7777776543 4555554667999999999999999
Q ss_pred EEeCCCcEEEEECCC------------------ce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc--
Q 042434 370 SVLSDKDIRILNLGT------------------YA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK-- 428 (517)
Q Consensus 370 ~~~~dg~i~i~d~~~------------------~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-- 428 (517)
+++.|+.|++||+.. .. .....+...+.+++|+|+++++++++.|+.|++||+.+....
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 999999999999852 22 222277788999999999999999999999999999887331
Q ss_pred -ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc--e-------------------------e------
Q 042434 429 -PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK--P-------------------------I------ 474 (517)
Q Consensus 429 -~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~-------------------------~------ 474 (517)
...+.+|... +.++.|+|++++|++|+.++.+ +|+..... . .
T Consensus 243 ~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (377)
T 3dwl_C 243 ALITVKLSQLP---LRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT 318 (377)
T ss_dssp ECCCEECSSSC---EEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------
T ss_pred eeEeecCCCCc---eEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccc
Confidence 5566677665 5566679999999999877666 66554111 0 0
Q ss_pred ---EEe----------------cCCCCCeeEEEecCCCCc---EEEEeeCCCcEEEeCC
Q 042434 475 ---EIL----------------SGHSMTVNCVSWNPKRPK---MLASASDDHTIRIWGP 511 (517)
Q Consensus 475 ---~~~----------------~~h~~~v~~v~~~~~~~~---~l~s~~~dg~v~iw~~ 511 (517)
..+ ..|.+.|+++++.+.... .|+|||.||.|++||+
T Consensus 319 ~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 319 ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 001 139999999998765433 6999999999999986
No 40
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=292.53 Aligned_cols=280 Identities=19% Similarity=0.230 Sum_probs=234.4
Q ss_pred HHhccccccCCCC-----CccccccCCCcccccCCC-c--ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEec
Q 042434 181 VTSQIDSCQYHNS-----SVAISLYEDHCCGRDQIP-T--ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL 252 (517)
Q Consensus 181 ~~~q~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~--~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~ 252 (517)
+...+..+.+.+. ...++...|.....+... . .....+.+|...|.+++|+|++.++++|+.|++|++||+.
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 3444555555432 124455555554444332 2 2355789999999999999999999999999999999997
Q ss_pred CCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc
Q 042434 253 EDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332 (517)
Q Consensus 253 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~ 332 (517)
++ .....+..|...+.+++|+|++++|++++.||.|++|++.+++....+..+...|.+++|+|++++|++|+.|+.
T Consensus 111 ~~---~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~ 187 (321)
T 3ow8_A 111 NG---KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 187 (321)
T ss_dssp TT---EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CC---CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCe
Confidence 66 455677889999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred eeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEE
Q 042434 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIV 410 (517)
Q Consensus 333 v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~ 410 (517)
|.+||..+.........+...|.+++|+|++++|++++.|+.|++||+++.. .....|...|.+++|+|++.++++
T Consensus 188 --i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s 265 (321)
T 3ow8_A 188 --INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVS 265 (321)
T ss_dssp --EEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred --EEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEE
Confidence 8889988665544444455689999999999999999999999999998876 455567888999999999999999
Q ss_pred EeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 411 NLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 411 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
++.|+.|++||+.+. .....+.+|... +..+.|+|++++|++++.||.|++||..
T Consensus 266 ~s~D~~v~iwd~~~~-~~~~~~~~h~~~---v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 266 SSSDKSVKVWDVGTR-TCVHTFFDHQDQ---VWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EETTSCEEEEETTTT-EEEEEECCCSSC---EEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EeCCCcEEEEeCCCC-EEEEEEcCCCCc---EEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999877 677778788766 5566679999999999999999999963
No 41
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.1e-37 Score=330.99 Aligned_cols=294 Identities=17% Similarity=0.231 Sum_probs=255.5
Q ss_pred ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEE
Q 042434 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLK 292 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 292 (517)
+..+.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.++ .....+.+|..+|.+++|+|++++|++++.||.|+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ---VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence 456788999999999999999999999999999999999765 45577889999999999999999999999999999
Q ss_pred EEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEcc-CCCEEEE
Q 042434 293 LWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTP-DGENLIS 370 (517)
Q Consensus 293 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~ 370 (517)
+||+.+++.+..+..|...|++++|+|+++++++++.||. +.+|+..+. ........+...|.+++|+| ++..+++
T Consensus 81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT--VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSE--EEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCE--EEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence 9999999999999999999999999999999999999999 667776643 44333444556899999999 8899999
Q ss_pred EeCCCcEEEEECCCce--EEee-ccCCCeeEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEee
Q 042434 371 VLSDKDIRILNLGTYA--ERVI-SEEHPITSLSVSV--DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSC 445 (517)
Q Consensus 371 ~~~dg~i~i~d~~~~~--~~~~-~~~~~i~~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 445 (517)
++.||.|++||+.+.. .... .+...+..++|+| ++.++++++.||.|++||+.++ .....+.+|... +.++
T Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~---v~~~ 234 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSN---VSFA 234 (814)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-EEEEEEECCSSC---EEEE
T ss_pred EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-cEEEEEcCCCCC---EEEE
Confidence 9999999999998766 2333 3447899999999 9999999999999999999876 666777777665 5666
Q ss_pred cCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 446 FGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 446 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
.++|+++++++++.||.|++||+.+++.+..+..|...+.+++|+|++..++++++.|+.+.+|++..+.
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 6799999999999999999999999999999999999999999999985554555667778899877644
No 42
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.7e-37 Score=287.35 Aligned_cols=278 Identities=21% Similarity=0.294 Sum_probs=224.2
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 042434 225 VWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT 304 (517)
Q Consensus 225 v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 304 (517)
.++++||+++ +||+| .|++|+|||+.++.... ...+.+|...|++++|+|++++|++|+.||+|++||+++++++..
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~-~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEE-EEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 5789999986 77776 58999999998774432 234567888999999999999999999999999999999999999
Q ss_pred eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEEC
Q 042434 305 FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL 382 (517)
Q Consensus 305 ~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 382 (517)
+.+|...+.++.+ ++..+++++.++. +..|+... ..+.... .+...+..+.++++++++++++.||.|++||+
T Consensus 105 ~~~h~~~~~~~~~--~~~~l~s~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 105 MTSHSARVGSLSW--NSYILSSGSRSGH--IHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp EECCSSCEEEEEE--ETTEEEEEETTSE--EEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred ecCccceEEEeec--CCCEEEEEecCCc--eEeeecCCCceeEEEEc-CccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence 9999988877655 5679999999999 66666553 3334444 34468999999999999999999999999999
Q ss_pred CCce------EEeeccCCCeeEEEEcCCCCEEE---EEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcE
Q 042434 383 GTYA------ERVISEEHPITSLSVSVDCKNFI---VNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453 (517)
Q Consensus 383 ~~~~------~~~~~~~~~i~~~~~s~~~~~l~---~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 453 (517)
++++ .....+...+..+.++|++..++ +++.++.|++||.... ....... +... +..+.+++++..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-~~~~~~~-~~~~---v~~~~~~~~~~~ 254 (318)
T 4ggc_A 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVD-AHSQ---VCSILWSPHYKE 254 (318)
T ss_dssp SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-CEEEEEE-CSSC---EEEEEEETTTTE
T ss_pred CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-ccccccc-ceee---eeeeeecccccc
Confidence 8754 34455677899999999776543 5567899999999775 2222222 2222 444455777777
Q ss_pred EEEe--cCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 454 IASG--SENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 454 l~~~--~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
++++ +.||.|++||+.+++++.++.+|.+.|++++|+|++ .+|+|||.||+|+|||+....|
T Consensus 255 ~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg-~~l~S~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 255 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLWRCFELDP 318 (318)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SCEEEEETTTEEEEECCSCCCC
T ss_pred eEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEECCCCCC
Confidence 7654 489999999999999999999999999999999999 7999999999999999987654
No 43
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=304.23 Aligned_cols=287 Identities=17% Similarity=0.234 Sum_probs=241.1
Q ss_pred ccccCcEEEEEECCCCC-EEEEeeCCCcEEEEEe----cCCCe---eeEEEEecc----------CCCCEEEEEECCCCC
Q 042434 219 TEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKV----LEDSK---LTLKHTLRS----------HQNPVSFVAWSPDDT 280 (517)
Q Consensus 219 ~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~----~~~~~---~~~~~~~~~----------h~~~v~~l~~s~~~~ 280 (517)
..|.+.|++++|+|+|+ +||+|+.||.|++|++ .++.. ......+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34669999999999999 9999999999999999 76541 012223333 677999999999999
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCc-----
Q 042434 281 KLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPK----- 355 (517)
Q Consensus 281 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~----- 355 (517)
+|++++.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.|+. +.+|+............+...
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENV--TILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCC--EEEEETTTTEEEEEECCC--------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCe--EEEEECCCCcEEEEeeccccCcccee
Confidence 999999999999999 678889999999999999999999999999999999 888898755443333333233
Q ss_pred ----------eEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 042434 356 ----------VLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVA 423 (517)
Q Consensus 356 ----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~ 423 (517)
+.+++|++++ .+++++.+|.|++||+.+.. .....+...+.+++|+|+++++++++.|+.|++||++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp -------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred eccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 8899999875 58899999999999999876 4555778899999999999999999999999999998
Q ss_pred CCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCC
Q 042434 424 GKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDD 503 (517)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d 503 (517)
.. .....+.+|... +..+.++|++ ++++++.||.|++||+.+++.+..+..|...|.+++|+|++ .+|++++.|
T Consensus 278 ~~-~~~~~~~~~~~~---i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d 351 (425)
T 1r5m_A 278 NG-NSQNCFYGHSQS---IVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG-QKYAVAFMD 351 (425)
T ss_dssp SB-SCSEEECCCSSC---EEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS-SEEEEEETT
T ss_pred CC-ccceEecCCCcc---EEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCC-CEEEEEECC
Confidence 76 566667666655 5566668899 99999999999999999999999999999999999999999 799999999
Q ss_pred CcEEEeCCCCCC
Q 042434 504 HTIRIWGPCQSS 515 (517)
Q Consensus 504 g~v~iw~~~~~~ 515 (517)
|.|++|++.+++
T Consensus 352 g~i~i~~~~~~~ 363 (425)
T 1r5m_A 352 GQVNVYDLKKLN 363 (425)
T ss_dssp SCEEEEECHHHH
T ss_pred CeEEEEECCCCc
Confidence 999999987543
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.7e-38 Score=308.15 Aligned_cols=305 Identities=12% Similarity=0.128 Sum_probs=245.1
Q ss_pred ccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC
Q 042434 199 LYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD 278 (517)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 278 (517)
..++....|+....+....+..| ..+....|+|++++|++|+.||.|++||+.++ .....+.+|...|.+++|+|+
T Consensus 75 ~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~ 150 (420)
T 3vl1_A 75 RLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---LQREIDQAHVSEITKLKFFPS 150 (420)
T ss_dssp EETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC---EEEEETTSSSSCEEEEEECTT
T ss_pred EcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc---ceeeecccccCccEEEEECCC
Confidence 33444555555555555556666 55556678999999999999999999998654 455677899999999999999
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCc--CC--
Q 042434 279 DTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGT--RI-- 353 (517)
Q Consensus 279 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~--~~-- 353 (517)
+++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+. +.+||...... ..+..+ +.
T Consensus 151 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~--v~iwd~~~~~~~~~~~~~~~~~~~ 228 (420)
T 3vl1_A 151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGT--IRLWECGTGTTIHTFNRKENPHDG 228 (420)
T ss_dssp SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSC--EEEEETTTTEEEEEECBTTBTTCC
T ss_pred CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCc--EEEeECCCCceeEEeecCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999 88889875443 333321 22
Q ss_pred -------------------CceEEEEEccCCCEEEEEeCCCcEEEEECCCceE---EeeccCCCeeEEEEcCCCC-EEEE
Q 042434 354 -------------------PKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE---RVISEEHPITSLSVSVDCK-NFIV 410 (517)
Q Consensus 354 -------------------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~i~~~~~s~~~~-~l~~ 410 (517)
..+.+++|+|+++++++++.||.|++||+++... ....+...+.+++|+|++. ++++
T Consensus 229 v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 308 (420)
T 3vl1_A 229 VNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYA 308 (420)
T ss_dssp EEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEE
T ss_pred ccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEE
Confidence 2344455678999999999999999999998772 2234667899999999999 9999
Q ss_pred EeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC---------ceeEEecCCC
Q 042434 411 NLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS---------KPIEILSGHS 481 (517)
Q Consensus 411 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~h~ 481 (517)
++.||.|++||+++.......+.++... .+..++ .+++++|++++.||.|++||+... .....+.+|.
T Consensus 309 g~~dg~i~vwd~~~~~~~~~~~~~~~~~--~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 385 (420)
T 3vl1_A 309 GYENGMLAQWDLRSPECPVGEFLINEGT--PINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSND 385 (420)
T ss_dssp EETTSEEEEEETTCTTSCSEEEEESTTS--CEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSS
T ss_pred EeCCCeEEEEEcCCCcCchhhhhccCCC--CceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCC
Confidence 9999999999998875556666653322 244444 457899999999999999998773 2233456788
Q ss_pred CCeeEEEecCCCCc---EEEEeeCCCcEEEeCCCC
Q 042434 482 MTVNCVSWNPKRPK---MLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 482 ~~v~~v~~~~~~~~---~l~s~~~dg~v~iw~~~~ 513 (517)
+.|.+++|+|++ . .+++++.+|.+.+|++..
T Consensus 386 ~~v~~~~~s~~~-~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 386 DAVSQFCYVSDD-ESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCCCEEEEECCS-SSSCEEEEEETTTEEEEEESCC
T ss_pred cceEEEEEccCC-CCcceEEEEcCCceEEEEeccC
Confidence 999999999999 5 677788899999999875
No 45
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-37 Score=302.44 Aligned_cols=286 Identities=19% Similarity=0.262 Sum_probs=232.9
Q ss_pred EEEeccccCcE--EEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec-cCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434 215 VQILTEHKNEV--WFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR-SHQNPVSFVAWSPDDTKLLTCGNAEVL 291 (517)
Q Consensus 215 ~~~l~~h~~~v--~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i 291 (517)
+....+|...+ .+++|++ ..+++++.||.|++|++.++... ..+. .|...|.+++|+|++++|++|+.||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~---~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 158 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVS---ALAETDESTYVASVKWSHDGSFLSVGLGNGLV 158 (401)
T ss_dssp EEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEE---EEEECCTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEe---EeeecCCCCCEEEEEECCCCCEEEEECCCCeE
Confidence 33444777664 4456654 56888889999999999876432 3333 388999999999999999999999999
Q ss_pred EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC--CCeeEeeeCcCCCceEEEEEccCCCEEE
Q 042434 292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD--GNEIKAWRGTRIPKVLDLAVTPDGENLI 369 (517)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 369 (517)
++||+.+++.+..+..|...|.+++|+ ++.+++++.||. |.+||.. +.....+.. +...|.+++|+|++++++
T Consensus 159 ~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~ 233 (401)
T 4aez_A 159 DIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGA--IHHHDVRIANHQIGTLQG-HSSEVCGLAWRSDGLQLA 233 (401)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSE--EEEEETTSSSCEEEEEEC-CSSCEEEEEECTTSSEEE
T ss_pred EEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCC--EEEEecccCcceeeEEcC-CCCCeeEEEEcCCCCEEE
Confidence 999999999999999999999999994 679999999999 7888877 333444444 456899999999999999
Q ss_pred EEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEE-Ee--CCCeEEEEEcCCCCccceEEeCcccCceEEEe
Q 042434 370 SVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIV-NL--NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRS 444 (517)
Q Consensus 370 ~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~-~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~ 444 (517)
+++.||.|++||+++.. .....+...+.+++|+|++..+++ ++ .|+.|++||+.++ .....+..+. .+..
T Consensus 234 s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~~~~----~v~~ 308 (401)
T 4aez_A 234 SGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNTVDAGS----QVTS 308 (401)
T ss_dssp EEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEEEECSS----CEEE
T ss_pred EEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEEEeCCC----cEEE
Confidence 99999999999999876 344567889999999998765554 43 6999999999876 4455554322 2667
Q ss_pred ecCCCCCcEEEE--ecCCCcEEEEecCCCceeE--EecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 445 CFGGLDGTFIAS--GSENSQIYIWNRRNSKPIE--ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 445 ~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
+.|+|+++++++ |+.||.|++||+.+++... .+.+|...|.+++|+|++ .+|++++.||.|++|++.+++.
T Consensus 309 ~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 309 LIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDG-RILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp EEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTS-SEEEEECTTSEEEEEECCC---
T ss_pred EEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcc
Confidence 777999999999 5589999999999876544 467899999999999999 7999999999999999998764
No 46
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=294.85 Aligned_cols=282 Identities=13% Similarity=0.133 Sum_probs=219.5
Q ss_pred hccccccCCCCCc-cccccCCCcccccC----------CC-cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEE
Q 042434 183 SQIDSCQYHNSSV-AISLYEDHCCGRDQ----------IP-TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWK 250 (517)
Q Consensus 183 ~q~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~-~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~ 250 (517)
.++..+.|+++.. .++.+++....|+. .+ .........|...|++++|+|++ .|++|+.||+|+|||
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd 109 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWE 109 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEe
Confidence 3456667777766 33444433333331 01 11222334577889999999985 688999999999999
Q ss_pred ecCCCeeeE-EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC-eEEEee
Q 042434 251 VLEDSKLTL-KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK-RLVCGS 328 (517)
Q Consensus 251 ~~~~~~~~~-~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~ 328 (517)
+.+++.... .....+|.+.|++++|+|++++|++|+.||+|++||+.+++++..+.+|...|.+++|+|++. .|++++
T Consensus 110 ~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s 189 (344)
T 4gqb_B 110 LDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS 189 (344)
T ss_dssp ECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred ccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeec
Confidence 987765433 345678999999999999999999999999999999999999999999999999999999885 688999
Q ss_pred CCCceeEEEEeCCCC-eeEeee-CcCCCceEEEEEccC-CCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcC
Q 042434 329 SDTEKGIFMCDCDGN-EIKAWR-GTRIPKVLDLAVTPD-GENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSV 403 (517)
Q Consensus 329 ~d~~v~i~~~~~~~~-~~~~~~-~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~ 403 (517)
.|+. |.+||.... ....+. ..+...+.+++|+|+ ++++++|+.||.|++||+++++ .....|...|.+++|+|
T Consensus 190 ~D~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp 267 (344)
T 4gqb_B 190 EDNR--ILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSP 267 (344)
T ss_dssp TTSC--EEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECS
T ss_pred cccc--cccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence 9999 888888754 333332 233346899999995 5688999999999999999877 55667889999999999
Q ss_pred CC-CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc-EEEEecCCCcEEEEecCCCc
Q 042434 404 DC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT-FIASGSENSQIYIWNRRNSK 472 (517)
Q Consensus 404 ~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 472 (517)
++ ++|++++.|+.|++||+.++ ....+.+|... +.++.|+|++. +|++++.||+|++|++.+..
T Consensus 268 ~g~~~lasgs~D~~i~vwd~~~~--~~~~~~~H~~~---V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 268 HSVPFLASLSEDCSLAVLDSSLS--ELFRSQAHRDF---VRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SSSCCEEEEETTSCEEEECTTCC--EEEEECCCSSC---EEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCeEEEEEeCCCeEEEEECCCC--cEEEEcCCCCC---EEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 98 57899999999999999875 34556777765 66677799886 67799999999999998654
No 47
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3e-37 Score=292.95 Aligned_cols=285 Identities=14% Similarity=0.111 Sum_probs=242.4
Q ss_pred EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCC-eEEEEeCCCeEEE
Q 042434 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT-KLLTCGNAEVLKL 293 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~i 293 (517)
.....+|.+.|++++|+|++++|++|+.||.|++|++.++........+.+|...|.+++|+|+++ +|++|+.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 344568999999999999999999999999999999987763344455668999999999999999 9999999999999
Q ss_pred EEC-CCCcEEEEeCC--CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC---------Ce-eEeeeCcCCCceEEEE
Q 042434 294 WDV-ETGICKHTFGD--HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG---------NE-IKAWRGTRIPKVLDLA 360 (517)
Q Consensus 294 wd~-~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~---------~~-~~~~~~~~~~~i~~~~ 360 (517)
||+ .+++. ..+.. |...|.+++|+| +..+++++.|+. |.+|+... .. +..+. +...+.+++
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~ 157 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGL--IEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMD 157 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSE--EEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEE
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCe--EEEEcccccccccccccCCeeeEEe--eCCceEEEE
Confidence 999 88765 66778 999999999999 999999999999 77777653 22 22222 446899999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCC-ce----EEeeccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCC-----Cccc
Q 042434 361 VTPDGENLISVLSDKDIRILNLGT-YA----ERVISEEHPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGK-----WEKP 429 (517)
Q Consensus 361 ~~~~~~~l~~~~~dg~i~i~d~~~-~~----~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~-----~~~~ 429 (517)
|+|++ +++++.++.|++||+++ .. .....+...+.+++|+| +++++++++.||.|++|++... ....
T Consensus 158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp ECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred ecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence 99987 99999999999999988 43 34456778899999999 9999999999999999999775 3666
Q ss_pred eEEeCccc------CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCC-CCCeeEEEecCCCCcEEEEeeC
Q 042434 430 FKYTGHSQ------NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH-SMTVNCVSWNPKRPKMLASASD 502 (517)
Q Consensus 430 ~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~~~~~l~s~~~ 502 (517)
..+..|.. ....+.++.++|++++|++|+.||.|++||+.+++++..+.+| .+.|++++ |++ .+|++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~-~~l~s~s~ 312 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD-NILCLATS 312 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS-SEEEEEEE
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC-CeEEEEec
Confidence 67777654 1224667777999999999999999999999999999999998 99999999 888 79999999
Q ss_pred CCc-EEEeC
Q 042434 503 DHT-IRIWG 510 (517)
Q Consensus 503 dg~-v~iw~ 510 (517)
||. .+.|.
T Consensus 313 Dg~~~~~~~ 321 (342)
T 1yfq_A 313 DDTFKTNAA 321 (342)
T ss_dssp CTHHHHCSS
T ss_pred CCccccccc
Confidence 999 55555
No 48
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.2e-38 Score=299.56 Aligned_cols=283 Identities=13% Similarity=0.103 Sum_probs=217.4
Q ss_pred cCcEEEEEECCCCCEEEEeeCCC-------cEEEEEecCCCe-----e--eEEEEeccCCCCEEEEEECCCCCeEEEE--
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDC-------SAIIWKVLEDSK-----L--TLKHTLRSHQNPVSFVAWSPDDTKLLTC-- 285 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg-------~i~iw~~~~~~~-----~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~-- 285 (517)
.-+|+|++|+|||++||+|+.|. .|++|++..+.. . .....+.+|...|.+++++ ++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 45899999999999999997643 599999865432 1 1223567888899888775 4566655
Q ss_pred ---------eCCCeEEEEECCCCcEE----EEe-----CCCCCceEEEEEeCCCCeEEEee--CCCceeEEEEeCCCCee
Q 042434 286 ---------GNAEVLKLWDVETGICK----HTF-----GDHGFIVSSCAWFPDSKRLVCGS--SDTEKGIFMCDCDGNEI 345 (517)
Q Consensus 286 ---------~~dg~i~iwd~~~~~~~----~~~-----~~~~~~v~~i~~~~~~~~l~~~~--~d~~v~i~~~~~~~~~~ 345 (517)
+.|+.+++|++.++... ... ..+...+.+++|+|||+++++++ .|++ |++||..+...
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~--i~iwd~~~~~~ 169 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAI--MRIIDPSDLTE 169 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCE--EEEEETTTTEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCE--EEEeECCCCcE
Confidence 45778999998665322 111 13355689999999999987554 6787 88899886554
Q ss_pred EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE----EeeccCCCeeEEEEcCCCCEEEEEeCCC----eE
Q 042434 346 KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE----RVISEEHPITSLSVSVDCKNFIVNLNSQ----EI 417 (517)
Q Consensus 346 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~d~----~i 417 (517)
..... +...|.+++|+|+|+++++++.+ .+.+|+..++.. ....+...+.+++|+|+++.+++++.++ .+
T Consensus 170 ~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i 247 (365)
T 4h5i_A 170 KFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVL 247 (365)
T ss_dssp EEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEE
T ss_pred EEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEE
Confidence 43333 33579999999999999998855 466666665552 2234666799999999999999998877 68
Q ss_pred EEEEcCCCCcc---ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEe-cCCCCCeeEEEecCCC
Q 042434 418 HMWDVAGKWEK---PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEIL-SGHSMTVNCVSWNPKR 493 (517)
Q Consensus 418 ~~~d~~~~~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~~ 493 (517)
+.|++...... ...+.+|... +.++.|+|||++||+|+.|++|+|||+.+++++.++ .+|...|++|+|+|||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~---V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg 324 (365)
T 4h5i_A 248 TKISIKSGNTSVLRSKQVTNRFKG---ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS 324 (365)
T ss_dssp EEEEEETTEEEEEEEEEEESSCSC---EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS
T ss_pred eecccccceecceeeeeecCCCCC---eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC
Confidence 88998665322 2334455544 667778999999999999999999999999999875 7899999999999999
Q ss_pred CcEEEEeeCCCcEEEeCCCCC
Q 042434 494 PKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 494 ~~~l~s~~~dg~v~iw~~~~~ 514 (517)
.+|||||.|++|+||++...
T Consensus 325 -~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 325 -TYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp -CEEEEEETTSEEEEEECCTT
T ss_pred -CEEEEEeCCCeEEEEEcCCC
Confidence 79999999999999999643
No 49
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.4e-37 Score=293.00 Aligned_cols=295 Identities=19% Similarity=0.256 Sum_probs=224.5
Q ss_pred EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC-eeeEEEEeccCCCCEEEEEECC--CCCeEEEEeCCCeE
Q 042434 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS-KLTLKHTLRSHQNPVSFVAWSP--DDTKLLTCGNAEVL 291 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i 291 (517)
...+.+|.+.|++++|+|++++||+|+.||.|++|++.++. .......+.+|...|.+++|+| ++++|++++.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 34678999999999999999999999999999999997543 2356677889999999999999 69999999999999
Q ss_pred EEEECCCC---------cEEEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCCCe-eEee-----------
Q 042434 292 KLWDVETG---------ICKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDGNE-IKAW----------- 348 (517)
Q Consensus 292 ~iwd~~~~---------~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~-~~~~----------- 348 (517)
++||+.++ +....+..|...|.+++|+|+ +.++++++.||. |.+||..... +..+
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI--LRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCE--EEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCc--EEEecCCChHHhcccccccccccccc
Confidence 99999887 567888899999999999999 999999999999 7778865322 1111
Q ss_pred -eCcCCCceEEEEEccC---CCEEEEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCC----CEEEEEeCCCe
Q 042434 349 -RGTRIPKVLDLAVTPD---GENLISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDC----KNFIVNLNSQE 416 (517)
Q Consensus 349 -~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~----~~l~~~~~d~~ 416 (517)
...+...+.+++|+|+ +..+++++.++.+.+|+..... .....+...|.+++|+|++ +++++++.||.
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~ 241 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence 1134457999999997 8999999999999888877765 2334577899999999998 89999999999
Q ss_pred EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe----cCCCcEEEEecCCCceeEEecCCCCCeeEEEecCC
Q 042434 417 IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG----SENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPK 492 (517)
Q Consensus 417 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~ 492 (517)
|++||++....... ....... ......++....+..+ .....+.+|+....+++..+.+|...|++++|+|+
T Consensus 242 i~iwd~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 317 (351)
T 3f3f_A 242 IRIFKITEKLSPLA-SEESLTN---SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLT 317 (351)
T ss_dssp EEEEEEEECC-------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSS
T ss_pred EEEEeCCCCcCccc-cCCcccc---eeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCC
Confidence 99999976522221 1111111 1122223333333333 34456777777778899999999999999999999
Q ss_pred CCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 493 RPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 493 ~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
+ .+|++++.||.|++|++.++++
T Consensus 318 ~-~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 318 G-TILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp S-CCEEEEETTSCEEEEEECTTSC
T ss_pred C-CEEEEecCCCcEEEEecCcCcc
Confidence 9 7999999999999999998764
No 50
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1e-36 Score=285.92 Aligned_cols=281 Identities=17% Similarity=0.205 Sum_probs=226.2
Q ss_pred hccccccCCCCC--ccccccCCCcccccCCC------cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCC
Q 042434 183 SQIDSCQYHNSS--VAISLYEDHCCGRDQIP------TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLED 254 (517)
Q Consensus 183 ~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~ 254 (517)
..+..+.+.+.. ..++...|.....+... ..++..+.+|...|++++|+|+|++|++|+.|++|++||+.++
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~ 97 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG 97 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 344555565532 24555666655444332 3457789999999999999999999999999999999999766
Q ss_pred CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC------CCeEEEee
Q 042434 255 SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD------SKRLVCGS 328 (517)
Q Consensus 255 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~------~~~l~~~~ 328 (517)
.....+.+|...|.+++|+|++.+|++|+.|++|++||+. +.++..+.+|...|.++.|+|. +..+++++
T Consensus 98 ---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~ 173 (319)
T 3frx_A 98 ---ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173 (319)
T ss_dssp ---EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEE
T ss_pred ---CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe
Confidence 4567888999999999999999999999999999999995 5677888899999999999985 44899999
Q ss_pred CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCE
Q 042434 329 SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKN 407 (517)
Q Consensus 329 ~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~ 407 (517)
.|+. |.+||............+...|.+++|+|+++++++++.||.|++||+.+.+ .........+.+++|+|++.+
T Consensus 174 ~d~~--i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~ 251 (319)
T 3frx_A 174 NDKM--VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYW 251 (319)
T ss_dssp TTSC--EEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSE
T ss_pred CCCE--EEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCE
Confidence 9999 8889988766555555566799999999999999999999999999999887 445556678999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCccceEEeCcc-----cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434 408 FIVNLNSQEIHMWDVAGKWEKPFKYTGHS-----QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS 471 (517)
Q Consensus 408 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 471 (517)
+++++. +.+++|++... .....+..+. .....+.++.|+|||++|++|+.||.|++||+.++
T Consensus 252 la~~~~-~~i~v~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 252 LAAATA-TGIKVFSLDPQ-YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEET-TEEEEEEETTE-EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEEcC-CCcEEEEeCcC-eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 888775 45999998764 3333332211 11123556677999999999999999999998764
No 51
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9.8e-37 Score=283.09 Aligned_cols=264 Identities=21% Similarity=0.327 Sum_probs=203.3
Q ss_pred EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCeEE
Q 042434 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD--DTKLLTCGNAEVLK 292 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~ 292 (517)
+..+.+|.+.|++++|+|+|++||+|+.|++|+||++..+. .....++.+|.++|.+++|+|+ +++|++|+.||+|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 35678999999999999999999999999999999996432 2445788999999999999864 89999999999999
Q ss_pred EEECCCCc--EEEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCCC--e-eEeeeCcCCCceEEEEEccCC
Q 042434 293 LWDVETGI--CKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDGN--E-IKAWRGTRIPKVLDLAVTPDG 365 (517)
Q Consensus 293 iwd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~~--~-~~~~~~~~~~~i~~~~~~~~~ 365 (517)
+||+.+++ .+..+..|...|.+++|+|+ +.+|++++.|+. |.+|+.... . ...+ ..+...|.+++|+|++
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~--v~~wd~~~~~~~~~~~~-~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK--VSVVEFKENGTTSPIII-DAHAIGVNSASWAPAT 157 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSE--EEEEEBCSSSCBCCEEE-ECCSSCEEEEEECCCC
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCc--EEEEEecCCCceeeeee-ecccCccceEeecCCc
Confidence 99998874 55677789999999999997 889999999999 666666532 1 2223 3344579999999875
Q ss_pred CEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc---cceEEeCcccCceEE
Q 042434 366 ENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE---KPFKYTGHSQNKYVI 442 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~i 442 (517)
..- ++. ....+++++|++++.|+.|++||++.... ....+.+|... +
T Consensus 158 ~~~-----~~~----------------------~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~---V 207 (297)
T 2pm7_B 158 IEE-----DGE----------------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW---V 207 (297)
T ss_dssp ---------------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC---E
T ss_pred ccc-----ccc----------------------CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCc---e
Confidence 211 000 00123577888888888888888865421 33456666665 5
Q ss_pred EeecCCCC---CcEEEEecCCCcEEEEecCCCc---eeEEe--cCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 443 RSCFGGLD---GTFIASGSENSQIYIWNRRNSK---PIEIL--SGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 443 ~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~~---~~~~~--~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
..+.|+|+ +.+|++++.|++|++||+.++. ....+ ..|...|.+++|+|++ .+|++++.||.|++|+...
T Consensus 208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEEECT
T ss_pred EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEEECC
Confidence 56666887 4899999999999999987643 12233 4688999999999999 7999999999999999763
No 52
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.6e-36 Score=298.01 Aligned_cols=285 Identities=16% Similarity=0.260 Sum_probs=239.9
Q ss_pred ccEEEeccccCcE-EEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434 213 ETVQILTEHKNEV-WFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL 291 (517)
Q Consensus 213 ~~~~~l~~h~~~v-~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 291 (517)
.....+.+|.+.| .++.+ ++++|++|+.||+|++||+.++ .....+.+|.+.|.+++|+|++ .+++|+.||+|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~---~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i 185 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTV 185 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCC---cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCE
Confidence 3456888999885 66666 5679999999999999999765 5667888999999999999988 99999999999
Q ss_pred EEEECCCCcEEEEeCCCCCceEEEEEe--CCCCeEEEeeCCCceeEEEEeCCCCee-----------------------E
Q 042434 292 KLWDVETGICKHTFGDHGFIVSSCAWF--PDSKRLVCGSSDTEKGIFMCDCDGNEI-----------------------K 346 (517)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~~~~~d~~v~i~~~~~~~~~~-----------------------~ 346 (517)
++||+.+++++..+.+|...|.+++|+ +++.++++|+.|+. +.+|+...... .
T Consensus 186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT--LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC--EEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc--EEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 999999999999999999999999998 57789999999999 77777764321 1
Q ss_pred eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434 347 AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG 424 (517)
Q Consensus 347 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 424 (517)
.....+...+.++ +++++.+++++.||.|++||+++.. .....+...+.+++|+|+++.+++++.|+.|++||+++
T Consensus 264 ~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 264 GVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp EEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred EEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 1222333455555 6789999999999999999999887 44556788999999999999999999999999999988
Q ss_pred CCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCC
Q 042434 425 KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDH 504 (517)
Q Consensus 425 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg 504 (517)
+ .....+.+|.... .++.++ +.++++|+.||.|++||+.++....... |...+..++|+|++ .++++++ ||
T Consensus 342 ~-~~~~~~~~h~~~v---~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~-~~l~~~~-dg 412 (464)
T 3v7d_B 342 G-ELMYTLQGHTALV---GLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSD-NILVSGS-EN 412 (464)
T ss_dssp T-EEEEEECCCSSCE---EEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECS-SEEEEEE-TT
T ss_pred C-cEEEEEeCCCCcE---EEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCC-CEEEEec-CC
Confidence 7 6777888887764 344433 6899999999999999999988776664 67788899999999 7888888 89
Q ss_pred cEEEeCCCCCCC
Q 042434 505 TIRIWGPCQSSE 516 (517)
Q Consensus 505 ~v~iw~~~~~~~ 516 (517)
.|++||+.+++.
T Consensus 413 ~i~iwd~~~g~~ 424 (464)
T 3v7d_B 413 QFNIYNLRSGKL 424 (464)
T ss_dssp EEEEEETTTCCE
T ss_pred eEEEEECCCCcE
Confidence 999999998864
No 53
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.9e-37 Score=290.64 Aligned_cols=283 Identities=18% Similarity=0.234 Sum_probs=235.1
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 300 (517)
|.++|.+++|+|||++++++..++.+.+|... ..... ....+|...|.+++|+|+++++++++ ||.|++||+.++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIP--RHARQ-INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCC--SEEEE-EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccC--Ccccc-ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence 67789999999999999998888877777543 22233 33457999999999999999999998 9999999998765
Q ss_pred EE---EEeC--CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe--eEeeeCcCCCceEEEEEccCCCEEEEEeC
Q 042434 301 CK---HTFG--DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE--IKAWRGTRIPKVLDLAVTPDGENLISVLS 373 (517)
Q Consensus 301 ~~---~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 373 (517)
.. ..+. .|...|.+++|+|+++++++++.|+. +.+|+..+.. .......+...+.+++|+|+++.+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (337)
T 1gxr_A 84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST--LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE--EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCc--EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence 32 2222 78999999999999999999999999 7778877544 33333445568999999999999999999
Q ss_pred CCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCC
Q 042434 374 DKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDG 451 (517)
Q Consensus 374 dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 451 (517)
||.|++||+++.+ .....+...+.+++|+|+++.+++++.|+.|++||+++. .....+. +... +..+.++|++
T Consensus 162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~-~~~~---v~~~~~s~~~ 236 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG-RQLQQHD-FTSQ---IFSLGYCPTG 236 (337)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEE-CSSC---EEEEEECTTS
T ss_pred CCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC-ceEeeec-CCCc---eEEEEECCCC
Confidence 9999999999877 344457889999999999999999999999999999876 4444433 2222 5566779999
Q ss_pred cEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 452 TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 452 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
+++++++.||.|++||+.+++.. .+..|...|.+++|+|++ .+|++++.||.|++|++.+++.
T Consensus 237 ~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 237 EWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp SEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE
T ss_pred CEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCCeE
Confidence 99999999999999999988754 567899999999999999 7999999999999999988764
No 54
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-36 Score=337.23 Aligned_cols=309 Identities=21% Similarity=0.309 Sum_probs=260.7
Q ss_pred CCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC--C
Q 042434 201 EDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP--D 278 (517)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~ 278 (517)
++....|+....+.+..+.+|.+.|++++|+|+|++||+|+.||.|+|||+.++ .....+.+|...|.+++|+| +
T Consensus 636 d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~ 712 (1249)
T 3sfz_A 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG---KLVHTYDEHSEQVNCCHFTNKSN 712 (1249)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSSS
T ss_pred CCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCCCCcEEEEEEecCCC
Confidence 344556777778889999999999999999999999999999999999999766 45677889999999999999 5
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-------------
Q 042434 279 DTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI------------- 345 (517)
Q Consensus 279 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~------------- 345 (517)
+.++++|+.||.|++||+.++++...+.+|...|.+++|+|+++++++++.||. |.+||......
T Consensus 713 ~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~--v~vwd~~~~~~~~~~~~~~~~~~~ 790 (1249)
T 3sfz_A 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT--LRLWDVRSANERKSINVKRFFLSS 790 (1249)
T ss_dssp CCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE--EEEEEGGGTEEEEEEECCCCC---
T ss_pred ceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe--EEEEeCCCCcccceeccccccccc
Confidence 568999999999999999999999999999999999999999999999999999 66666543211
Q ss_pred ------------------------------------------EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECC
Q 042434 346 ------------------------------------------KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLG 383 (517)
Q Consensus 346 ------------------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 383 (517)
......+...+.+++|+|+++.+++++.+|.|++||+.
T Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 870 (1249)
T ss_dssp -----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred CCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Confidence 11122445678999999999999999999999999999
Q ss_pred Cce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc----------------------------ceEEe
Q 042434 384 TYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK----------------------------PFKYT 433 (517)
Q Consensus 384 ~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~----------------------------~~~~~ 433 (517)
++. .....|...|.+++|+|+++.+++++.|+.|++||+.+.... .....
T Consensus 871 ~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1249)
T 3sfz_A 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950 (1249)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEE
T ss_pred CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEe
Confidence 887 455678889999999999999999999999999997531000 00000
Q ss_pred Cccc-----CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434 434 GHSQ-----NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRI 508 (517)
Q Consensus 434 ~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i 508 (517)
+... ....+.++.++|+++++++|+.||.|++||+.+++....+.+|...|++++|+|++ .++++++.||.|++
T Consensus 951 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~v 1029 (1249)
T 3sfz_A 951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQV 1029 (1249)
T ss_dssp ESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEE
T ss_pred cCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEE
Confidence 0000 11235667779999999999999999999999999999999999999999999999 79999999999999
Q ss_pred eCCCCCC
Q 042434 509 WGPCQSS 515 (517)
Q Consensus 509 w~~~~~~ 515 (517)
|++.+++
T Consensus 1030 wd~~~~~ 1036 (1249)
T 3sfz_A 1030 WNWQTGD 1036 (1249)
T ss_dssp EETTTTE
T ss_pred EECCCCc
Confidence 9998764
No 55
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1e-36 Score=290.13 Aligned_cols=281 Identities=21% Similarity=0.276 Sum_probs=235.1
Q ss_pred HHhccccccCCCCCc-cccccCCC-cccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC---
Q 042434 181 VTSQIDSCQYHNSSV-AISLYEDH-CCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS--- 255 (517)
Q Consensus 181 ~~~q~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--- 255 (517)
+...+.++.|+++.. .++...|. ...|+..+.+....+..|...|.+++|+|+|.+|++|+.|+.+++|++....
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~ 142 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN 142 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc
Confidence 345567777877655 44444454 5567777788888999999999999999999999999999999999985431
Q ss_pred eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeC--CCCeEEEeeCCCce
Q 042434 256 KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFP--DSKRLVCGSSDTEK 333 (517)
Q Consensus 256 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~d~~v 333 (517)
.......+.+|...|.+++|+|++..|++++.|++|++||+++++++..+.+|...|.+++|+| ++++|++|+.||.
T Consensus 143 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~- 221 (354)
T 2pbi_B 143 MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK- 221 (354)
T ss_dssp SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC-
T ss_pred ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe-
Confidence 1123355678999999999999999999999999999999999999999999999999999988 4789999999999
Q ss_pred eEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE-Eeec---cCCCeeEEEEcCCCCEEE
Q 042434 334 GIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE-RVIS---EEHPITSLSVSVDCKNFI 409 (517)
Q Consensus 334 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~---~~~~i~~~~~s~~~~~l~ 409 (517)
|.+||............+...|.+++|+|++..+++++.|++|++||+++... .... ....+.+++|+|++.+++
T Consensus 222 -v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 300 (354)
T 2pbi_B 222 -AMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLF 300 (354)
T ss_dssp -EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred -EEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEE
Confidence 88899876554444444556899999999999999999999999999998762 2222 234688999999999999
Q ss_pred EEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434 410 VNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN 467 (517)
Q Consensus 410 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 467 (517)
+++.|+.|++||+.++ .....+.+|... +.++.|+|+|++|++|+.||+|++|+
T Consensus 301 ~g~~d~~i~vwd~~~~-~~~~~l~~h~~~---v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 301 AGYNDYTINVWDVLKG-SRVSILFGHENR---VSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEETTSCEEEEETTTC-SEEEEECCCSSC---EEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCcEEEEECCCC-ceEEEEECCCCc---EEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999776 566677788766 66667799999999999999999996
No 56
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=289.26 Aligned_cols=297 Identities=15% Similarity=0.260 Sum_probs=242.8
Q ss_pred ccCCCcccEEEeccccCcEEEEEECCC---CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE
Q 042434 207 RDQIPTETVQILTEHKNEVWFVQFSNN---GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL 283 (517)
Q Consensus 207 ~~~~~~~~~~~l~~h~~~v~~~~~s~~---~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 283 (517)
....|.+.+..+.+|.+.|++++|+|+ |++|++|+.||.|++|++.+... .....+.+|...|.+++|+|++++|+
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-TIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-EEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-eeEEEeccccCCEEEEEECcCCCEEE
Confidence 345677888899999999999999998 69999999999999999976322 34467788999999999999999999
Q ss_pred EEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEE--eCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEE
Q 042434 284 TCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAW--FPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLA 360 (517)
Q Consensus 284 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~ 360 (517)
+++.||.|++||+.+++.... ..|...|.+++| +|++.+|++++.||. |.+||.... .+..+..+. .+.++.
T Consensus 103 s~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~--i~vwd~~~~~~~~~~~~~~--~~~~~~ 177 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQI-AQHDAPVKTIHWIKAPNYSCVMTGSWDKT--LKFWDTRSSNPMMVLQLPE--RCYCAD 177 (368)
T ss_dssp EEETTSEEEEEETTTTEEEEE-EECSSCEEEEEEEECSSCEEEEEEETTSE--EEEECSSCSSCSEEEECSS--CEEEEE
T ss_pred EEcCCCcEEEEEcCCCCceee-ccccCceEEEEEEeCCCCCEEEEccCCCc--EEEEECCCCcEEEEEecCC--CceEEE
Confidence 999999999999999987764 479999999999 889999999999999 888888653 344444433 555665
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCceE----EeeccCCCeeEEEEcCCCCE----EEEEeCCCeEEEEEcCCCC--ccce
Q 042434 361 VTPDGENLISVLSDKDIRILNLGTYAE----RVISEEHPITSLSVSVDCKN----FIVNLNSQEIHMWDVAGKW--EKPF 430 (517)
Q Consensus 361 ~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~i~~~~~s~~~~~----l~~~~~d~~i~~~d~~~~~--~~~~ 430 (517)
+. +..+++++.++.+.+||++.... ..........++.+.++... +++++.|+.|++||++... ....
T Consensus 178 ~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 178 VI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF 255 (368)
T ss_dssp EE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred ec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence 55 45889999999999999987652 22234456677777666554 9999999999999997653 3445
Q ss_pred EEeCcccCc---------eEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEee
Q 042434 431 KYTGHSQNK---------YVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 431 ~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~ 501 (517)
.+.+|.... ..+.++.++|++++|++|+.||.|++||+.+++++..+.+|...|++++|+|++ .+|++++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~s 334 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNG-NIFAYAS 334 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTS-SCEEEEE
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCC-CeEEEEe
Confidence 566655421 136677789999999999999999999999999999999999999999999999 7999999
Q ss_pred CCCcEEEeCCC
Q 042434 502 DDHTIRIWGPC 512 (517)
Q Consensus 502 ~dg~v~iw~~~ 512 (517)
.|+..+.|++-
T Consensus 335 ~d~~~~~~~~~ 345 (368)
T 3mmy_A 335 SYDWSKGHEFY 345 (368)
T ss_dssp CCCSTTCGGGC
T ss_pred ccccccccccc
Confidence 98866655543
No 57
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=286.83 Aligned_cols=288 Identities=21% Similarity=0.292 Sum_probs=218.6
Q ss_pred ccccccCCCCCc-cccccCCCcc-cccCCCccc---EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeee
Q 042434 184 QIDSCQYHNSSV-AISLYEDHCC-GRDQIPTET---VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLT 258 (517)
Q Consensus 184 q~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~---~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~ 258 (517)
.+..+.|++... .++...|... .|+...... .....+|.+.|++++|+|+|++|++|+.|++|++|+...+ ...
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~-~~~ 96 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD-DFE 96 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC--EE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC-CeE
Confidence 344566776655 3344445444 444333322 2234789999999999999999999999999999998654 335
Q ss_pred EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc---EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeE
Q 042434 259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI---CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGI 335 (517)
Q Consensus 259 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i 335 (517)
....+.+|...|.+++|+|++++|++|+.|++|++||+.++. ++..+..|...|.+++|+|++.+|++++.|+. |
T Consensus 97 ~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~--i 174 (345)
T 3fm0_A 97 CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDT--V 174 (345)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSC--E
T ss_pred EEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCc--E
Confidence 667889999999999999999999999999999999998763 46678899999999999999999999999999 5
Q ss_pred EEEeCCCCe--eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-----------------EEee-ccCCC
Q 042434 336 FMCDCDGNE--IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-----------------ERVI-SEEHP 395 (517)
Q Consensus 336 ~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------------~~~~-~~~~~ 395 (517)
.+|+..... .......+...|.+++|+|++++|++++.|++|++||..... .... .+...
T Consensus 175 ~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 254 (345)
T 3fm0_A 175 KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254 (345)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC
T ss_pred EEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc
Confidence 666655432 222333455689999999999999999999999999963211 0111 26678
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc---cceEE-----eCcccCceEEEeecCCCCC-cEEEEecCCCcEEEE
Q 042434 396 ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE---KPFKY-----TGHSQNKYVIRSCFGGLDG-TFIASGSENSQIYIW 466 (517)
Q Consensus 396 i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~-----~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iw 466 (517)
|.+++|+|++..+++++.|+.|++|+...... ....+ .+|... +.++.|+|++ .+|++|+.||+|++|
T Consensus 255 v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~---V~~v~~~p~~~~~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 255 IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD---VNCVAWNPKEPGLLASCSDDGEVAFW 331 (345)
T ss_dssp EEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC---EEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred EEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc---EeEeEEeCCCceEEEEcCCCCcEEEE
Confidence 99999999999999999999999999865421 11111 244443 6777779987 599999999999999
Q ss_pred ecCCCceeEEe
Q 042434 467 NRRNSKPIEIL 477 (517)
Q Consensus 467 d~~~~~~~~~~ 477 (517)
++.+++.....
T Consensus 332 ~~~~~~~~~~~ 342 (345)
T 3fm0_A 332 KYQRPEGLHHH 342 (345)
T ss_dssp EECC-------
T ss_pred EecCCCCcccc
Confidence 99988765543
No 58
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.1e-36 Score=333.86 Aligned_cols=289 Identities=24% Similarity=0.353 Sum_probs=252.2
Q ss_pred cEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434 214 TVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKL 293 (517)
Q Consensus 214 ~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 293 (517)
....+.+|.+.|++++|+|+|++||+|+.||+|++||+.++ .....+.+|.+.|.+++|+|++++|++++.||+|++
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI 683 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC---CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence 45578899999999999999999999999999999999766 455778899999999999999999999999999999
Q ss_pred EECCCCcEEEEeCCCCCceEEEEEeC--CCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434 294 WDVETGICKHTFGDHGFIVSSCAWFP--DSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV 371 (517)
Q Consensus 294 wd~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 371 (517)
||+.+++.+..+..|...|.+++|+| ++..+++|+.|+. |.+||..+.........+.+.|.+++|+|+++.++++
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~--v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~ 761 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF--LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASC 761 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC--EEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe--EEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEE
Confidence 99999999999999999999999999 5568999999999 8888988655544444566799999999999999999
Q ss_pred eCCCcEEEEECCCceE-Eee--------------ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcc
Q 042434 372 LSDKDIRILNLGTYAE-RVI--------------SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS 436 (517)
Q Consensus 372 ~~dg~i~i~d~~~~~~-~~~--------------~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 436 (517)
+.||.|++||+.+... ... .....+.+++|+|+++.+++++ ++.+.+||+.+.........+|.
T Consensus 762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~ 840 (1249)
T 3sfz_A 762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHH 840 (1249)
T ss_dssp ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSS
T ss_pred ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCC
Confidence 9999999999987762 111 1123688999999999999887 68999999988744444444665
Q ss_pred cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 437 QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 437 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
.. +.++.++|+++++++++.||.|++||+.++..+..+.+|.+.|++++|+|++ ..+++++.||.|++|++.
T Consensus 841 ~~---v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 841 ST---IQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG-SSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp SC---CCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEHH
T ss_pred Cc---eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC-CEEEEEeCCCeEEEEEcc
Confidence 55 4556669999999999999999999999999999999999999999999999 799999999999999965
No 59
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.7e-36 Score=297.41 Aligned_cols=285 Identities=16% Similarity=0.315 Sum_probs=228.6
Q ss_pred cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC--------eeeEEEEeccCC------------CCEEEEEECCCC
Q 042434 220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS--------KLTLKHTLRSHQ------------NPVSFVAWSPDD 279 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--------~~~~~~~~~~h~------------~~v~~l~~s~~~ 279 (517)
.|.+.|++++|+|+|++||+|+.||.|+||++.++. .......+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 478999999999999999999999999999997553 233567888998 889999999998
Q ss_pred --CeEEEEeCCCeEEEEECCCCcEE---------------------------------------EE-eCCCCCceEEEEE
Q 042434 280 --TKLLTCGNAEVLKLWDVETGICK---------------------------------------HT-FGDHGFIVSSCAW 317 (517)
Q Consensus 280 --~~l~s~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~i~~ 317 (517)
..|++++.||+|++||+.++... .. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999999765432 12 3579999999999
Q ss_pred eCCCCeEEEeeCCCceeEEEEeCC-CC-eeEee------eCcCCCceEEEEEccCC-CEEEEEeCCCcEEEEECCCceE-
Q 042434 318 FPDSKRLVCGSSDTEKGIFMCDCD-GN-EIKAW------RGTRIPKVLDLAVTPDG-ENLISVLSDKDIRILNLGTYAE- 387 (517)
Q Consensus 318 ~~~~~~l~~~~~d~~v~i~~~~~~-~~-~~~~~------~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~- 387 (517)
+|++++|++| .|+. |.+||.. +. ....+ ...+...|.+++|+|++ +.+++++.||.|++||+++...
T Consensus 186 ~~~~~~l~s~-~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 186 NSDYETYLSA-DDLR--INLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp CTTSSEEEEE-CSSE--EEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred cCCCCEEEEe-CCCe--EEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 9999999998 7998 8888887 32 22221 23455689999999998 9999999999999999988652
Q ss_pred ----E-eeccCC------------CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCce----------
Q 042434 388 ----R-VISEEH------------PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKY---------- 440 (517)
Q Consensus 388 ----~-~~~~~~------------~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~---------- 440 (517)
. ...+.. .+.+++|+|+++++++++. +.|++||++........+.+|.....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence 2 223333 8999999999999999999 99999999874467777777753211
Q ss_pred --EEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec---------------------------------CCCCCee
Q 042434 441 --VIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS---------------------------------GHSMTVN 485 (517)
Q Consensus 441 --~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------------------------~h~~~v~ 485 (517)
.+..+.|+|++++|++|+.||.|++||+.+++.+. +. .+...|.
T Consensus 342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred cccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 11125569999999999999999999999987653 22 2345788
Q ss_pred EEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 486 CVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 486 ~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
+++|+|++ .+||+++.++ +++|.-
T Consensus 421 ~~~~~p~~-~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 421 HTAWHPKE-NIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EEEECSSS-SEEEEECSSC-EEEEEC
T ss_pred EEEECCCC-CEEEEEecce-eeeecc
Confidence 99999999 7898888876 777754
No 60
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.1e-36 Score=289.81 Aligned_cols=283 Identities=19% Similarity=0.310 Sum_probs=227.3
Q ss_pred HhccccccCCCCCc-cccccCCCcccccCCCcccEEEeccccC------------------cEEEEEECCCCCEEEEeeC
Q 042434 182 TSQIDSCQYHNSSV-AISLYEDHCCGRDQIPTETVQILTEHKN------------------EVWFVQFSNNGEYLASSSS 242 (517)
Q Consensus 182 ~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~------------------~v~~~~~s~~~~~l~t~~~ 242 (517)
...+.++.|+++.. ..+..++....|+....+.+..+.+|.. .|++++|+|+|++|++|+.
T Consensus 64 ~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp SSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred CCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 34456667777665 2333344455566566667777766543 4999999999999999999
Q ss_pred CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeC-CC
Q 042434 243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFP-DS 321 (517)
Q Consensus 243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~ 321 (517)
||.|++||+.++ .....+.+|...|.+++|+|++++|++++.|++|++||+.++++...+. +...+.+++|+| ++
T Consensus 144 d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 144 DRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG 219 (393)
T ss_dssp TSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred CCeEEEEECCCC---cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence 999999999755 5567889999999999999999999999999999999999999888774 567899999999 89
Q ss_pred CeEEEeeCCCceeEEEEeCCCCee-Eeee------CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--------
Q 042434 322 KRLVCGSSDTEKGIFMCDCDGNEI-KAWR------GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-------- 386 (517)
Q Consensus 322 ~~l~~~~~d~~v~i~~~~~~~~~~-~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------- 386 (517)
+++++|+.|+. |.+||...... ..+. ..+...|.+++|+|+++++++++.|+.|++||+++..
T Consensus 220 ~~l~~~s~d~~--v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 297 (393)
T 1erj_A 220 KYIAAGSLDRA--VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297 (393)
T ss_dssp CEEEEEETTSC--EEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred CEEEEEcCCCc--EEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence 99999999999 88888875443 3321 3455689999999999999999999999999997532
Q ss_pred ------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeec---CCCCCcEEEEe
Q 042434 387 ------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCF---GGLDGTFIASG 457 (517)
Q Consensus 387 ------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~---~s~~~~~l~~~ 457 (517)
.....|...|.+++|+|++.++++++.|+.|++||+.++ .....+.+|......+.... ++|++++|++|
T Consensus 298 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sg 376 (393)
T 1erj_A 298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 376 (393)
T ss_dssp ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEE
Confidence 234567788999999999999999999999999999887 66778888887755554332 45689999999
Q ss_pred cCCCcEEEEecCCC
Q 042434 458 SENSQIYIWNRRNS 471 (517)
Q Consensus 458 ~~dg~i~iwd~~~~ 471 (517)
+.||+|++|++...
T Consensus 377 s~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 377 SGDCKARIWKYKKI 390 (393)
T ss_dssp ETTSEEEEEEEEEC
T ss_pred CCCCcEEECccccc
Confidence 99999999998643
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8.4e-36 Score=293.62 Aligned_cols=301 Identities=17% Similarity=0.291 Sum_probs=252.2
Q ss_pred cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE
Q 042434 196 AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW 275 (517)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~ 275 (517)
..+..++....|+....+.+..+.+|.+.|++++|+ ++++++|+.||+|++||+.++ .....+.+|...|.+++|
T Consensus 133 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~ 207 (445)
T 2ovr_B 133 VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETG---ECIHTLYGHTSTVRCMHL 207 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEE
T ss_pred EEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcC---cEEEEECCCCCcEEEEEe
Confidence 334444556677777788999999999999999997 569999999999999999766 556788899999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCc
Q 042434 276 SPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPK 355 (517)
Q Consensus 276 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~ 355 (517)
+ ++.+++|+.||+|++||+.+++.+..+..|...|.+++| ++..+++|+.||. |.+||............+...
T Consensus 208 ~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~ 281 (445)
T 2ovr_B 208 H--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM--VKVWDPETETCLHTLQGHTNR 281 (445)
T ss_dssp E--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC--EEEEEGGGTEEEEEECCCSSC
T ss_pred c--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE--EEEEECCCCcEeEEecCCCCc
Confidence 5 678999999999999999999999999999999999999 7889999999999 888888765544444445568
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe
Q 042434 356 VLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT 433 (517)
Q Consensus 356 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 433 (517)
+.++.+ ++..+++++.||.|++||+++++ .....+...+.++.+ +++++++++.||.|++||++++ .....+.
T Consensus 282 v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~ 356 (445)
T 2ovr_B 282 VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQ 356 (445)
T ss_dssp EEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEEC
T ss_pred eEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEc
Confidence 999998 88899999999999999999887 334456666776666 5679999999999999999876 5666666
Q ss_pred CcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEe-----cCCCCCeeEEEecCCCCcEEEEeeCCCc---
Q 042434 434 GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEIL-----SGHSMTVNCVSWNPKRPKMLASASDDHT--- 505 (517)
Q Consensus 434 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~v~~~~~~~~~l~s~~~dg~--- 505 (517)
++......+.++.+ +++++++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++ .++++|+.||+
T Consensus 357 ~~~~~~~~v~~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~la~~~~dg~~~~ 433 (445)
T 2ovr_B 357 GPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK-LVCAVGSRNGTEET 433 (445)
T ss_dssp STTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE-EEEEEECSSSSSCC
T ss_pred cCCCCCCCEEEEEE--CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCE-EEEEEcccCCCCcc
Confidence 63333333555544 5789999999999999999999998888 4688999999999999 79999999998
Q ss_pred -EEEeCCCCCC
Q 042434 506 -IRIWGPCQSS 515 (517)
Q Consensus 506 -v~iw~~~~~~ 515 (517)
|.+||+....
T Consensus 434 ~l~v~df~~~~ 444 (445)
T 2ovr_B 434 KLLVLDFDVDM 444 (445)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEECCCCC
Confidence 9999998643
No 62
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.6e-36 Score=307.46 Aligned_cols=318 Identities=21% Similarity=0.264 Sum_probs=258.3
Q ss_pred hccccccCCCCCc-cccccCCCcccccCCCc----ccEEEeccccCc-EEEEEECC--CCCEEEEeeCCCcEEEEEecCC
Q 042434 183 SQIDSCQYHNSSV-AISLYEDHCCGRDQIPT----ETVQILTEHKNE-VWFVQFSN--NGEYLASSSSDCSAIIWKVLED 254 (517)
Q Consensus 183 ~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~l~~h~~~-v~~~~~s~--~~~~l~t~~~dg~i~iw~~~~~ 254 (517)
..+..+.++++.. .+...++....|+.... +....+.+|.+. |++++|+| ++++||+|+.||.|++||+.++
T Consensus 19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~ 98 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 98 (615)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred CceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCC
Confidence 4456666776665 22333444555655556 789999999999 99999999 9999999999999999999643
Q ss_pred C-----eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC----CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC-eE
Q 042434 255 S-----KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA----EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK-RL 324 (517)
Q Consensus 255 ~-----~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l 324 (517)
. .......+..|...|.+++|+|++++|++++.+ +.|.+|| +++.+..+..|...|.+++|+|++. .+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l 176 (615)
T 1pgu_A 99 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRS 176 (615)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEE
T ss_pred cccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEE
Confidence 1 235667788899999999999999999999987 6888888 6788889999999999999999998 89
Q ss_pred EEeeCCCceeEEEEeCCCCeeEeeeCcCCC---ceEEEEEccC-CCEEEEEeCCCcEEEEECCCce-EEee-----ccCC
Q 042434 325 VCGSSDTEKGIFMCDCDGNEIKAWRGTRIP---KVLDLAVTPD-GENLISVLSDKDIRILNLGTYA-ERVI-----SEEH 394 (517)
Q Consensus 325 ~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~-----~~~~ 394 (517)
++++.|+. +.+|+............+.. .|.+++|+|+ ++++++++.||.|++||+.+++ .... .+..
T Consensus 177 ~~~~~d~~--v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 254 (615)
T 1pgu_A 177 MTVGDDGS--VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 254 (615)
T ss_dssp EEEETTTE--EEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred EEEeCCCc--EEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCC
Confidence 99999999 88889886655444444556 7999999999 9999999999999999998877 3333 6788
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc-CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce
Q 042434 395 PITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ-NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP 473 (517)
Q Consensus 395 ~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 473 (517)
.+.+++|+ +++++++++.|+.|++||+++. .....+..+.. ....+..+.+ +++.++++++.||.|++||+.++++
T Consensus 255 ~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~g~i~~~d~~~~~~ 331 (615)
T 1pgu_A 255 GIFALSWL-DSQKFATVGADATIRVWDVTTS-KCVQKWTLDKQQLGNQQVGVVA-TGNGRIISLSLDGTLNFYELGHDEV 331 (615)
T ss_dssp CEEEEEES-SSSEEEEEETTSEEEEEETTTT-EEEEEEECCTTCGGGCEEEEEE-EETTEEEEEETTSCEEEEETTEEEE
T ss_pred ceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cEEEEEcCCCCcccCceeEEEe-CCCCeEEEEECCCCEEEEECCCCcE
Confidence 99999999 9999999999999999999876 55556655521 1112333333 3899999999999999999999999
Q ss_pred eEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 474 IEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 474 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
+..+.+|...|++++| |+ +++++.||.|++|++.
T Consensus 332 ~~~~~~~~~~v~~~~~-~~----l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 332 LKTISGHNKGITALTV-NP----LISGSYDGRIMEWSSS 365 (615)
T ss_dssp EEEECCCSSCEEEEET-TT----TEEEETTSCEEETTTT
T ss_pred EEEEeCCCCCEEEEEe-cC----cEEECCCCeEEEEEch
Confidence 9999999999988888 76 6666667777776653
No 63
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.6e-37 Score=303.72 Aligned_cols=279 Identities=16% Similarity=0.172 Sum_probs=227.1
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEE
Q 042434 224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH 303 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 303 (517)
.+++++|+|+|++|++|+.||.|++||+.++.. ...+..| ..+....|+|++++|++|+.||.|++||+.+++...
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG---SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEET---TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccce---eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee
Confidence 345789999999999999999999999864422 2233344 445556789999999999999999999999999999
Q ss_pred EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEEC
Q 042434 304 TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL 382 (517)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 382 (517)
.+..|...|.+++|+|++++|++++.|+. |.+||.... .+..+. .+...|.+++|+|+++.+++++.||.|++||+
T Consensus 134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~--i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 134 IDQAHVSEITKLKFFPSGEALISSSQDMQ--LKIWSVKDGSNPRTLI-GHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp ETTSSSSCEEEEEECTTSSEEEEEETTSE--EEEEETTTCCCCEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred ecccccCccEEEEECCCCCEEEEEeCCCe--EEEEeCCCCcCceEEc-CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 88999999999999999999999999999 888888754 444444 44568999999999999999999999999999
Q ss_pred CCceE-Eeec----c---------------------CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcc
Q 042434 383 GTYAE-RVIS----E---------------------EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS 436 (517)
Q Consensus 383 ~~~~~-~~~~----~---------------------~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 436 (517)
++++. .... + ...+.+++|+|+++++++++.||.|++||+++..........|.
T Consensus 211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 290 (420)
T 3vl1_A 211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT 290 (420)
T ss_dssp TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTS
T ss_pred CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccC
Confidence 98772 2221 2 24455566689999999999999999999988733333333444
Q ss_pred cCceEEEeecCCCCCc-EEEEecCCCcEEEEecCCCc-eeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 437 QNKYVIRSCFGGLDGT-FIASGSENSQIYIWNRRNSK-PIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 437 ~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
.. +.++.++|++. +|++|+.||.|++||+++++ ++..+.+ |...|.++.|. ++ .+|++++.||.|++|++..
T Consensus 291 ~~---v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 291 CS---CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AG-ALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp SC---EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TT-EEEEEETTTEEEEEEEECC
T ss_pred CC---ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CC-CEEEEecCCccEEEEeccC
Confidence 44 66667799998 99999999999999999875 4777776 67788888665 56 6999999999999999876
Q ss_pred C
Q 042434 514 S 514 (517)
Q Consensus 514 ~ 514 (517)
+
T Consensus 366 ~ 366 (420)
T 3vl1_A 366 P 366 (420)
T ss_dssp T
T ss_pred C
Confidence 4
No 64
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.3e-35 Score=291.32 Aligned_cols=277 Identities=21% Similarity=0.293 Sum_probs=232.8
Q ss_pred EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEE
Q 042434 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLW 294 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 294 (517)
+....+|...|+|++| ++++|++|+.||.|++||..++ .....+.+|...|.+++| ++++|++|+.||+|++|
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL---ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 198 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC---CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC---eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEE
Confidence 3344568889999887 7899999999999999999765 456778899999999999 78899999999999999
Q ss_pred ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee---EeeeCcCCCceEEEEEccCCCEEEEE
Q 042434 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI---KAWRGTRIPKVLDLAVTPDGENLISV 371 (517)
Q Consensus 295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~ 371 (517)
|+.+++.+..+..|...|.+++|+ +..+++|+.||. |.+||...... ......+...|.++++ ++++++++
T Consensus 199 d~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~ 272 (435)
T 1p22_A 199 DVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRS--IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSA 272 (435)
T ss_dssp ESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSC--EEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEE
T ss_pred ECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCc--EEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEE
Confidence 999999999999999999999997 459999999999 77778764332 2344455568999988 78899999
Q ss_pred eCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434 372 LSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL 449 (517)
Q Consensus 372 ~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 449 (517)
+.||.|++||++++. .....+...+.++.+ +++.+++++.||.|++||++++ .....+.+|... +.++.+
T Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~---v~~~~~-- 344 (435)
T 1p22_A 273 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG-ACLRVLEGHEEL---VRCIRF-- 344 (435)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECCCSSC---EEEEEC--
T ss_pred eCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC-CEEEEEeCCcCc---EEEEEe--
Confidence 999999999999877 445567788998888 5689999999999999999887 677778887766 444443
Q ss_pred CCcEEEEecCCCcEEEEecCCCc---------eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 450 DGTFIASGSENSQIYIWNRRNSK---------PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 450 ~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
++.++++|+.||.|++||+.++. ++..+.+|.+.|++++| ++ ..|++++.||.|++||+.++.
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DE-FQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CS-SCEEECCSSSEEEEEC-----
T ss_pred cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CC-CEEEEEeCCCEEEEEECCCCC
Confidence 78999999999999999997766 78899999999999999 55 579999999999999998764
No 65
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-37 Score=306.00 Aligned_cols=291 Identities=11% Similarity=0.088 Sum_probs=218.3
Q ss_pred EEeccccCcEEEEEECCC------CCEEEEeeCCCcEEEEEecCCCee--------eEEEEeccCCCCEEEEEECCCCCe
Q 042434 216 QILTEHKNEVWFVQFSNN------GEYLASSSSDCSAIIWKVLEDSKL--------TLKHTLRSHQNPVSFVAWSPDDTK 281 (517)
Q Consensus 216 ~~l~~h~~~v~~~~~s~~------~~~l~t~~~dg~i~iw~~~~~~~~--------~~~~~~~~h~~~v~~l~~s~~~~~ 281 (517)
..+.+|.+.|++++|+|+ +.+||+|+.||+|+|||+..+... .+..++.+|...|++++|++++ .
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~ 279 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T 279 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence 457788999999999997 579999999999999999755321 1224678899999999999864 8
Q ss_pred EEEEeCCCeEEEEECCCCc-EEEEeCCCCCceEEE--EEeCCC-CeEEEeeCCCceeEEEEeCCCCe-eEeeeCcCC-Cc
Q 042434 282 LLTCGNAEVLKLWDVETGI-CKHTFGDHGFIVSSC--AWFPDS-KRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTRI-PK 355 (517)
Q Consensus 282 l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i--~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~-~~ 355 (517)
|++|+.||+|++||+.++. +...+..|...|.++ +|+|++ .+|++|+.|++ |.+||.+... ...+..+.. ..
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~t--vklWD~~~~~~~~~~~~~~~~~~ 357 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGY--FYIFNPKDIATTKTTVSRFRGSN 357 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSE--EEEECGGGHHHHCEEEEECSCCS
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCe--EEEEECCCCCcccccccccccCc
Confidence 9999999999999998774 445678999999999 568887 89999999999 8888886532 223333222 24
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe
Q 042434 356 VLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT 433 (517)
Q Consensus 356 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 433 (517)
+.+++|+|+++.+++++.|++|++||+++.. .....|...|.+++|+|+++.+++|+.|++|++||+... ......
T Consensus 358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~ 435 (524)
T 2j04_B 358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIK 435 (524)
T ss_dssp CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC-
T ss_pred ccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh--hccccc
Confidence 7889999999999999999999999998876 456678999999999999999999999999999998653 111111
Q ss_pred Cc--ccCceEEEeecCCCCCcEEEEecCCCcEEEEecC-CCceeEEecCCCCCeeEEEecCCCC--cEEEEeeCCCcEEE
Q 042434 434 GH--SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR-NSKPIEILSGHSMTVNCVSWNPKRP--KMLASASDDHTIRI 508 (517)
Q Consensus 434 ~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~v~~~~~~~--~~l~s~~~dg~v~i 508 (517)
.. ......+..+.++|+|..+. ...+ ..+|+.. ++.++.++.+|...|++|+|+|+++ ..+|+|+.||.|+|
T Consensus 436 ~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl 512 (524)
T 2j04_B 436 NSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL 512 (524)
T ss_dssp -----CCCCEEEECBCCSSSCEEE-ECCC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEE
T ss_pred cCccceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEE
Confidence 11 01112344566799998553 2222 3344433 5778888999999999999999962 48999999999999
Q ss_pred eCCCCC
Q 042434 509 WGPCQS 514 (517)
Q Consensus 509 w~~~~~ 514 (517)
|++...
T Consensus 513 w~l~~~ 518 (524)
T 2j04_B 513 EYLSLE 518 (524)
T ss_dssp EECSCC
T ss_pred EEcccc
Confidence 998753
No 66
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-35 Score=304.04 Aligned_cols=316 Identities=18% Similarity=0.272 Sum_probs=250.5
Q ss_pred hccccccCCCCCc--ccccc-CCCcccccCCCcccEEEeccccC---cEEEEEECCC-CCEEEEeeCCCcEEEEEecCCC
Q 042434 183 SQIDSCQYHNSSV--AISLY-EDHCCGRDQIPTETVQILTEHKN---EVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDS 255 (517)
Q Consensus 183 ~q~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~l~~h~~---~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~ 255 (517)
..+..+.|++... .+... +.....|+..+.+.+..+.+|.+ .|++++|+|+ +++|++|+.||.|++||+.++
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~- 239 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG- 239 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-
Confidence 3455566666542 33333 34455677677788999999999 9999999999 999999999999999999766
Q ss_pred eeeEEEEe-c---cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCC----CCceEEEEEeCCCCeEEEe
Q 042434 256 KLTLKHTL-R---SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH----GFIVSSCAWFPDSKRLVCG 327 (517)
Q Consensus 256 ~~~~~~~~-~---~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~~ 327 (517)
.....+ . .|...|.+++|+ ++.+|++++.||.|++||+.+++.+..+..+ ...+.++.|. ++.+++++
T Consensus 240 --~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 315 (615)
T 1pgu_A 240 --EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISL 315 (615)
T ss_dssp --CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEE
T ss_pred --CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEE
Confidence 344566 5 899999999999 9999999999999999999999999888766 4678888886 89999999
Q ss_pred eCCCceeEEEEeCCCCee-EeeeCc--------------------------------CCCce------------------
Q 042434 328 SSDTEKGIFMCDCDGNEI-KAWRGT--------------------------------RIPKV------------------ 356 (517)
Q Consensus 328 ~~d~~v~i~~~~~~~~~~-~~~~~~--------------------------------~~~~i------------------ 356 (517)
+.|+. +.+|+...... ..+..+ +...|
T Consensus 316 ~~~g~--i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~ 393 (615)
T 1pgu_A 316 SLDGT--LNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDD 393 (615)
T ss_dssp ETTSC--EEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTT
T ss_pred ECCCC--EEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCC
Confidence 99999 77777663222 111111 11122
Q ss_pred --------------------------------------------------------EEEEEccCCCEEEEEeC-CCcEEE
Q 042434 357 --------------------------------------------------------LDLAVTPDGENLISVLS-DKDIRI 379 (517)
Q Consensus 357 --------------------------------------------------------~~~~~~~~~~~l~~~~~-dg~i~i 379 (517)
.+++++ ++++++++. |+.|++
T Consensus 394 ~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~ 471 (615)
T 1pgu_A 394 TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQV 471 (615)
T ss_dssp EEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEE
T ss_pred CEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEE
Confidence 222332 556666666 777777
Q ss_pred EECCCceE---EeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeC-cccCceEEEeecCCC------
Q 042434 380 LNLGTYAE---RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG-HSQNKYVIRSCFGGL------ 449 (517)
Q Consensus 380 ~d~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~i~~~~~s~------ 449 (517)
||+.+... ....+...+.+++|+|+++++++++.|+.|++||+.+. .....+.+ |... +..+.|+|
T Consensus 472 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~h~~~---v~~~~~sp~~~~~~ 547 (615)
T 1pgu_A 472 FKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR-EVKTSRWAFRTSK---INAISWKPAEKGAN 547 (615)
T ss_dssp EETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEECCSCCCSSC---EEEEEECCCC----
T ss_pred EECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC-cceeEeecCCCCc---eeEEEEcCcccccc
Confidence 77776552 23346778999999999999999999999999999876 55555555 6554 66677799
Q ss_pred ----CCcEEEEecCCCcEEEEecCCC-ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 450 ----DGTFIASGSENSQIYIWNRRNS-KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 450 ----~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
++++|++|+.||.|++||+.++ +++..+.+|...|++++|+|++ . |++++.||.|++|++..
T Consensus 548 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-T-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-E-EEEEETTSCEEEEEEC-
T ss_pred ccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC-C-eEEecCCceEEEEeeec
Confidence 9999999999999999999998 7899999999999999999999 6 99999999999999875
No 67
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.9e-35 Score=276.82 Aligned_cols=252 Identities=20% Similarity=0.339 Sum_probs=215.2
Q ss_pred eeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEE
Q 042434 257 LTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIF 336 (517)
Q Consensus 257 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~ 336 (517)
.....++.+|...|++++|+|++++|++++.||.|++|++.+++....+..|...|.+++|+|++++|++++.|+. |.
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~--i~ 90 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT--LK 90 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSE--EE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCE--EE
Confidence 4566788999999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred EEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCC
Q 042434 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNS 414 (517)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d 414 (517)
+||............+...|.+++|+|+++++++++.|+.|++||+++.+ .....+..++.+++|+|+++++++++.|
T Consensus 91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 88887554433333445689999999999999999999999999999877 4445677899999999999999999999
Q ss_pred CeEEEEEcCCCCccceEEe-CcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeE--EEec-
Q 042434 415 QEIHMWDVAGKWEKPFKYT-GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNC--VSWN- 490 (517)
Q Consensus 415 ~~i~~~d~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~--v~~~- 490 (517)
+.|++||+++. .....+. .+.. .+..+.++|+++++++++.||.|++||+.+++++..+.+|...+.. ..++
T Consensus 171 ~~i~~wd~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 171 GLCRIWDTASG-QCLKTLIDDDNP---PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp SCEEEEETTTC-CEEEEECCSSCC---CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred CcEEEEECCCC-ceeeEEeccCCC---ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 99999999876 3333332 2222 3556677999999999999999999999999999999988765433 3454
Q ss_pred CCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 491 PKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 491 ~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
+++ .++++|+.||.|++||+.+++
T Consensus 247 ~~~-~~l~sg~~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 247 TGG-KWIVSGSEDNLVYIWNLQTKE 270 (312)
T ss_dssp SSS-CEEEECCTTSCEEEEETTTCC
T ss_pred CCC-cEEEEECCCCEEEEEECCCch
Confidence 455 799999999999999998765
No 68
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-36 Score=315.98 Aligned_cols=195 Identities=14% Similarity=0.147 Sum_probs=152.4
Q ss_pred hccccccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEE
Q 042434 183 SQIDSCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLK 260 (517)
Q Consensus 183 ~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~ 260 (517)
..+.++.|++... +.+..++.+..|+....+.... ..|...|++++|+| |++|++++.|++|+|||+.++.. .
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~---~ 92 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV---L 92 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE---E
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE---E
Confidence 3456667777655 3333344445555444444333 45889999999999 88999999999999999987643 3
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE-----------EEeCCCCCceEEEEEeCC-CCeEEEee
Q 042434 261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK-----------HTFGDHGFIVSSCAWFPD-SKRLVCGS 328 (517)
Q Consensus 261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~i~~~~~-~~~l~~~~ 328 (517)
..+. |.+.|++++|+|++++|++|+.||+|++||+.++++. ..+.+|..+|.+++|+|+ +..+++|+
T Consensus 93 ~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 93 TTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp EEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred EEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence 4443 7789999999999999999999999999999988764 233578899999999996 57899999
Q ss_pred CCCceeEEEEeCCCCee-EeeeCc-----------------CCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce
Q 042434 329 SDTEKGIFMCDCDGNEI-KAWRGT-----------------RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA 386 (517)
Q Consensus 329 ~d~~v~i~~~~~~~~~~-~~~~~~-----------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 386 (517)
.||. + +||...... ..+..+ +...|.+++|+|+|++|++++.||.|++||+++++
T Consensus 172 ~dg~--v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 172 EYVT--L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp SSCE--E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred CCCc--E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9998 7 899886544 333322 23579999999999999999999999999997654
No 69
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-35 Score=280.60 Aligned_cols=279 Identities=17% Similarity=0.218 Sum_probs=204.1
Q ss_pred cccccCCCCCccccccCCCcccccCCCc---ccEEEe-cc-ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC----
Q 042434 185 IDSCQYHNSSVAISLYEDHCCGRDQIPT---ETVQIL-TE-HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS---- 255 (517)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l-~~-h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~---- 255 (517)
+..+.+.+. ..++...|.....+.... .....+ .+ |.+.|++++|+|++++|++|+.|++|+||+.....
T Consensus 17 v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~ 95 (330)
T 2hes_X 17 IWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTF 95 (330)
T ss_dssp EEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------C
T ss_pred eeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccc
Confidence 344445544 333444444444333332 345555 45 99999999999999999999999999999985321
Q ss_pred eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC----CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCC
Q 042434 256 KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET----GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT 331 (517)
Q Consensus 256 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~ 331 (517)
.......+.+|...|.+++|+|++++|++|+.|++|++||+.. .+++..+..|...|.+++|+|++.+|++++.|+
T Consensus 96 ~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~ 175 (330)
T 2hes_X 96 EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175 (330)
T ss_dssp CCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence 2356678899999999999999999999999999999999943 256778889999999999999999999999999
Q ss_pred ceeEEEEeCCCC---eeEeeeCcCCCceEEEEEccC--CCEEEEEeCCCcEEEEECCCc--------e-EE-ee-ccCCC
Q 042434 332 EKGIFMCDCDGN---EIKAWRGTRIPKVLDLAVTPD--GENLISVLSDKDIRILNLGTY--------A-ER-VI-SEEHP 395 (517)
Q Consensus 332 ~v~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~--------~-~~-~~-~~~~~ 395 (517)
. |.+|+.... .+..+. .|...|.+++|+|+ +..+++++.|++|++||+... . .. .. .|...
T Consensus 176 ~--i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~ 252 (330)
T 2hes_X 176 T--VRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ 252 (330)
T ss_dssp C--EEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSC
T ss_pred e--EEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccc
Confidence 9 566665432 334444 45568999999998 678999999999999998654 1 11 11 26788
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-cc-eEEeCcccCceEEEeecCCC--CCcEEEEecCCCcEEEEecCC
Q 042434 396 ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE-KP-FKYTGHSQNKYVIRSCFGGL--DGTFIASGSENSQIYIWNRRN 470 (517)
Q Consensus 396 i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~-~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~iwd~~~ 470 (517)
|.+++|++++ .+++++.||.|++||..++.. .. ....+|.. ..+.++.|+| ++++|++|+.||.|++||+.+
T Consensus 253 v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~--~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 253 VYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGV--YEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTT--SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccccc--ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 9999999765 899999999999999876421 11 12234443 1355666677 789999999999999999864
No 70
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.6e-35 Score=280.99 Aligned_cols=265 Identities=20% Similarity=0.248 Sum_probs=211.2
Q ss_pred cccccCCCcc-cccCCC-------cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCC
Q 042434 196 AISLYEDHCC-GRDQIP-------TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ 267 (517)
Q Consensus 196 ~~~~~~~~~~-~~~~~~-------~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~ 267 (517)
.++...|... .|+... ..+...+.+|...|++++|+|++.++++|+.|++|++||+.++ .....+.+|.
T Consensus 42 l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~h~ 118 (343)
T 2xzm_R 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG---TTYKRFVGHQ 118 (343)
T ss_dssp EEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS---CEEEEEECCC
T ss_pred EEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---cEEEEEcCCC
Confidence 4455555544 444322 3457789999999999999999999999999999999999766 4557788999
Q ss_pred CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC---CCCCceEEEEEeCCC----------CeEEEeeCCCcee
Q 042434 268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG---DHGFIVSSCAWFPDS----------KRLVCGSSDTEKG 334 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~~----------~~l~~~~~d~~v~ 334 (517)
..|.+++|+|++++|++++.|++|++||+.. ....... .|...|.+++|+|++ .++++++.|+.
T Consensus 119 ~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-- 195 (343)
T 2xzm_R 119 SEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR-- 195 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSE--
T ss_pred CcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCE--
Confidence 9999999999999999999999999999974 4444433 688899999999987 78999999999
Q ss_pred EEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEe
Q 042434 335 IFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNL 412 (517)
Q Consensus 335 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~ 412 (517)
|.+||........+..+ ...|.+++|+|++++|++++.||.|++||+.... .....+...+.+++|+|++.+++++
T Consensus 196 i~iwd~~~~~~~~~~~h-~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~- 273 (343)
T 2xzm_R 196 LKVWNTNFQIRYTFKAH-ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG- 273 (343)
T ss_dssp EEEEETTTEEEEEEECC-SSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-
T ss_pred EEEEcCCCceeEEEcCc-cccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-
Confidence 77788666555555544 4689999999999999999999999999995433 3334456789999999999877654
Q ss_pred CCCeEEEEEcCCCCccc-eEEe-----------CcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434 413 NSQEIHMWDVAGKWEKP-FKYT-----------GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS 471 (517)
Q Consensus 413 ~d~~i~~~d~~~~~~~~-~~~~-----------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 471 (517)
.|+.|++||+.+..... ..+. +|.. .+.++.|+|+|++|++|+.||.|++|++.++
T Consensus 274 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 274 TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP---QCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC---CEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC---ceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 57889999997652221 1222 2322 3667778999999999999999999998765
No 71
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.8e-36 Score=282.53 Aligned_cols=248 Identities=20% Similarity=0.300 Sum_probs=198.2
Q ss_pred EEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC--CCCeEEEEeCCCeEEE
Q 042434 216 QILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP--DDTKLLTCGNAEVLKL 293 (517)
Q Consensus 216 ~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~i 293 (517)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. ......+.+|.+.|.+++|+| ++++|++|+.|++|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 3567899999999999999999999999999999997553 235677899999999999986 4899999999999999
Q ss_pred EECCCC--cEEEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCCCe---eEeeeCcCCCceEEEEEccC--
Q 042434 294 WDVETG--ICKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDGNE---IKAWRGTRIPKVLDLAVTPD-- 364 (517)
Q Consensus 294 wd~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~-- 364 (517)
||++++ .....+.+|...|.+++|+|+ +.+|++|+.|+. |.+|+..+.. .......+...+.+++|+|+
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~--i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA--ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC--EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC--EEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence 999887 466778899999999999998 789999999999 6666655431 12233345567899999997
Q ss_pred ---------------CCEEEEEeCCCcEEEEECCCc---e--EEeeccCCCeeEEEEcCCC----CEEEEEeCCCeEEEE
Q 042434 365 ---------------GENLISVLSDKDIRILNLGTY---A--ERVISEEHPITSLSVSVDC----KNFIVNLNSQEIHMW 420 (517)
Q Consensus 365 ---------------~~~l~~~~~dg~i~i~d~~~~---~--~~~~~~~~~i~~~~~s~~~----~~l~~~~~d~~i~~~ 420 (517)
++++++++.|+.|++||++.. . .....|...|.+++|+|++ ..|++++.|+.|++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 468999999999999999754 1 3345678899999999986 889999999999999
Q ss_pred EcCCCC---ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 421 DVAGKW---EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 421 d~~~~~---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
|+.... .....+..|... +..+.|+|++++|++++.||.|++|+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~---v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDV---VWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSC---EEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EccCccccchhhhhhhcCCCc---EEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 987521 122334445443 5566779999999999999999999975
No 72
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.8e-35 Score=289.37 Aligned_cols=297 Identities=18% Similarity=0.245 Sum_probs=244.6
Q ss_pred cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE
Q 042434 196 AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW 275 (517)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~ 275 (517)
..+..++....|+....+.+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.++ .....+.+|...|.+++|
T Consensus 136 ~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~ 211 (464)
T 3v7d_B 136 ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG---CCTHVFEGHNSTVRCLDI 211 (464)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC---cEEEEECCCCCccEEEEE
Confidence 334444556677777888999999999999999999988 9999999999999999766 456788899999999999
Q ss_pred C--CCCCeEEEEeCCCeEEEEECCCCcE-----------------------EEEeCCCCCceEEEEEeCCCCeEEEeeCC
Q 042434 276 S--PDDTKLLTCGNAEVLKLWDVETGIC-----------------------KHTFGDHGFIVSSCAWFPDSKRLVCGSSD 330 (517)
Q Consensus 276 s--~~~~~l~s~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 330 (517)
+ +++.++++|+.||+|++||+.++.. ...+.+|...|.++ +++++++++++.|
T Consensus 212 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d 289 (464)
T 3v7d_B 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYD 289 (464)
T ss_dssp EESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETT
T ss_pred ecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCC
Confidence 8 5789999999999999999987652 55677888888887 5678999999999
Q ss_pred CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEE
Q 042434 331 TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNF 408 (517)
Q Consensus 331 ~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l 408 (517)
+. |.+||............+...|.+++|+|+++.+++++.||.|++||+++++ .....+...+.+++++ ++++
T Consensus 290 ~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l 365 (464)
T 3v7d_B 290 NT--LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFL 365 (464)
T ss_dssp SC--EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEE
T ss_pred Ce--EEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEE
Confidence 99 8889988655544444555789999999999999999999999999999887 4455688889999997 5799
Q ss_pred EEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEE-ecCCCCCeeEE
Q 042434 409 IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEI-LSGHSMTVNCV 487 (517)
Q Consensus 409 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~v 487 (517)
++++.||.|++||+.+. ....... +... +..+.++++++++++|+ ||.|++||+.+++++.. +.+|.+.|.++
T Consensus 366 ~s~s~dg~v~vwd~~~~-~~~~~~~-~~~~---~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v 439 (464)
T 3v7d_B 366 VSAAADGSIRGWDANDY-SRKFSYH-HTNL---SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSV 439 (464)
T ss_dssp EEEETTSEEEEEETTTC-CEEEEEE-CTTC---CCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEE
T ss_pred EEEeCCCcEEEEECCCC-ceeeeec-CCCC---ccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEE
Confidence 99999999999999876 3332222 2222 23344578999999998 89999999999999886 66789999999
Q ss_pred EecCCCCcEEEEeeCCCcEEEeC
Q 042434 488 SWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 488 ~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
+|++ + .++++++.||.+.+|-
T Consensus 440 ~~~~-~-~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 440 NFKG-K-TLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEET-T-EEEEEEEETTEEEEEE
T ss_pred EecC-C-EEEEEEEeCCeEEEEE
Confidence 9983 3 5778888888766553
No 73
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.8e-37 Score=293.41 Aligned_cols=285 Identities=20% Similarity=0.312 Sum_probs=231.5
Q ss_pred HHhccccccCCCCCc-cccccCCC-cccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCC---
Q 042434 181 VTSQIDSCQYHNSSV-AISLYEDH-CCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS--- 255 (517)
Q Consensus 181 ~~~q~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--- 255 (517)
+...+.++.|++... .++...|. ...|+....+....+.+|...|.+++|+|+|++|++|+.|+.+++|++.+..
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~ 144 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD 144 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc
Confidence 345566777777655 44555554 5567777788899999999999999999999999999999999999986431
Q ss_pred -eeeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCCCcEEEEe-----CCCCCceEEEEEeC-CCCeEEEe
Q 042434 256 -KLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVETGICKHTF-----GDHGFIVSSCAWFP-DSKRLVCG 327 (517)
Q Consensus 256 -~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~i~~~~-~~~~l~~~ 327 (517)
.......+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..+ .+|...|.+++|++ ++.+|++|
T Consensus 145 ~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 224 (380)
T 3iz6_a 145 GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224 (380)
T ss_dssp CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEE
T ss_pred CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEE
Confidence 122335678999999999999974 67999999999999999999998877 57899999999987 88999999
Q ss_pred eCCCceeEEEEeCC--CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEE-eec-c-------CCCe
Q 042434 328 SSDTEKGIFMCDCD--GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER-VIS-E-------EHPI 396 (517)
Q Consensus 328 ~~d~~v~i~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~-~-------~~~i 396 (517)
+.|+. |.+||.+ +..+..+.. |.+.|.+++|+|+++++++++.||+|++||++++... ... + ...+
T Consensus 225 s~D~~--v~~wd~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v 301 (380)
T 3iz6_a 225 SCDTT--VRLWDLRITSRAVRTYHG-HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV 301 (380)
T ss_dssp ETTSC--EEEEETTTTCCCCEEECC-CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSC
T ss_pred ECCCe--EEEEECCCCCcceEEECC-cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCce
Confidence 99999 7788876 344444444 4468999999999999999999999999999987722 221 1 1248
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEE----eCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc
Q 042434 397 TSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKY----TGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK 472 (517)
Q Consensus 397 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 472 (517)
.+++|+|+|+++++++.||.|++||+... .....+ .+|... +.++.++|+|.+|++|+.||+|++|++...+
T Consensus 302 ~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~h~~~---v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 302 TSVAFSISGRLLFAGYSNGDCYVWDTLLA-EMVLNLGTLQNSHEGR---ISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SEEEECSSSSEEEEECTTSCEEEEETTTC-CEEEEECCSCSSCCCC---CCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEECCCCCEEEEEECCCCEEEEECCCC-ceEEEEecccCCCCCc---eEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999999999999999999766 344443 355554 5666779999999999999999999987654
No 74
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.6e-36 Score=284.73 Aligned_cols=284 Identities=13% Similarity=0.141 Sum_probs=217.5
Q ss_pred HHhccccccCCCCCc-cccccCCCcccc-------cCCCc----ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEE
Q 042434 181 VTSQIDSCQYHNSSV-AISLYEDHCCGR-------DQIPT----ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAII 248 (517)
Q Consensus 181 ~~~q~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~----~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~i 248 (517)
++.++.++.|.++.. .++...+....| +.... .......+|.+.|++++|+|++.+ ++++.||+|+|
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~l 119 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVEL 119 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSCEEE
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEE
Confidence 456778888888776 444444433222 22221 233445679999999999999865 56778999999
Q ss_pred EEecCCCeee-EEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC-eEEE
Q 042434 249 WKVLEDSKLT-LKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK-RLVC 326 (517)
Q Consensus 249 w~~~~~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~ 326 (517)
||+.++.... ......+|...|++++|+|++++|++|+.||+|++||+.+++++..+..|...|.+++|+|++. .+++
T Consensus 120 Wd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s 199 (357)
T 4g56_B 120 WEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLS 199 (357)
T ss_dssp C--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEE
T ss_pred eeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeee
Confidence 9997654321 1234568999999999999999999999999999999999999999999999999999999875 7899
Q ss_pred eeCCCceeEEEEeCCCCee-Eeee-CcCCCceEEEEEccCC-CEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEE
Q 042434 327 GSSDTEKGIFMCDCDGNEI-KAWR-GTRIPKVLDLAVTPDG-ENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSV 401 (517)
Q Consensus 327 ~~~d~~v~i~~~~~~~~~~-~~~~-~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~ 401 (517)
++.|+. |.+||...... .... ..+...+.+++|+|++ .++++|+.|+.|++||+++.+ .....+...|.+++|
T Consensus 200 ~~~dg~--v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~ 277 (357)
T 4g56_B 200 CGEDGR--ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY 277 (357)
T ss_dssp EETTSC--EEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEE
T ss_pred eccCCc--eEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEE
Confidence 999999 88888875433 2222 2344579999999974 688899999999999999877 555678889999999
Q ss_pred cCCC-CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCCc
Q 042434 402 SVDC-KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNSK 472 (517)
Q Consensus 402 s~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~ 472 (517)
+|++ ++|++++.|+.|++||++++ .. ....+|... +.++.|+| ++.+|++++.||+|++||+.+..
T Consensus 278 sp~~~~~lasgs~D~~i~iwd~~~~-~~-~~~~~H~~~---V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 278 SYHSSPFLASISEDCTVAVLDADFS-EV-FRDLSHRDF---VTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTSC-EE-EEECCCSSC---EEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred cCCCCCEEEEEeCCCEEEEEECCCC-cE-eEECCCCCC---EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9987 57889999999999999876 33 344467655 66677788 89999999999999999987543
No 75
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.3e-35 Score=286.90 Aligned_cols=280 Identities=23% Similarity=0.378 Sum_probs=237.8
Q ss_pred ccEEEeccccCcE-EEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeE
Q 042434 213 ETVQILTEHKNEV-WFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVL 291 (517)
Q Consensus 213 ~~~~~l~~h~~~v-~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 291 (517)
+....+.+|.+.| .| ++++|++|++|+.||.|++||+.++ .....+.+|.+.|.+++|+ ++.+++|+.||+|
T Consensus 109 ~~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i 181 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTG---KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTL 181 (445)
T ss_dssp CCCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTC---CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred ceeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCC---cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeE
Confidence 3456788999875 55 4457899999999999999999766 4567889999999999997 6699999999999
Q ss_pred EEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434 292 KLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV 371 (517)
Q Consensus 292 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 371 (517)
++||+.+++.+..+..|...|.++.|+ ++.+++|+.||. +.+||............+...+.++.+ +++.++++
T Consensus 182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 182 KVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDAT--LRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSG 255 (445)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSE--EEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEE
T ss_pred EEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCE--EEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEE
Confidence 999999999999999999999999996 568999999999 888898754443333345568999988 78899999
Q ss_pred eCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434 372 LSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL 449 (517)
Q Consensus 372 ~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 449 (517)
+.||.|++||+++.. .....+...+.++.+ ++.++++++.|+.|++||++++ .....+.+|...... + .+
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~---~--~~ 327 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSG---M--EL 327 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEE---E--EE
T ss_pred cCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEEEEEcCCcccEEE---E--EE
Confidence 999999999998877 344457788999998 8899999999999999999887 666777777665333 2 34
Q ss_pred CCcEEEEecCCCcEEEEecCCCceeEEecC---CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 450 DGTFIASGSENSQIYIWNRRNSKPIEILSG---HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
+++++++|+.||.|++||+.+++++..+.+ |...|++++|+ + .++++|+.||.|++||+.+++.
T Consensus 328 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 328 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--K-NFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--S-SEEEEEETTSEEEEEETTTCCE
T ss_pred eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--C-CEEEEEeCCCeEEEEECCCCce
Confidence 678999999999999999999999999986 88999999996 3 5899999999999999998764
No 76
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=314.64 Aligned_cols=320 Identities=13% Similarity=0.200 Sum_probs=241.8
Q ss_pred ccccccCCCCCccccccCCCcc-cccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEE--
Q 042434 184 QIDSCQYHNSSVAISLYEDHCC-GRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLK-- 260 (517)
Q Consensus 184 q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-- 260 (517)
.+..+.|.+....++...|... .|+....+++..+. |.+.|++++|+|++++|++|+.||.|++||+.++......
T Consensus 60 ~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~ 138 (902)
T 2oaj_A 60 AIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLD 138 (902)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEEC
T ss_pred CEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceec
Confidence 4566666663334555555544 55555667777775 7789999999999999999999999999999765321110
Q ss_pred ------EEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCCCcEEEEeCCC------------------CCceEEE
Q 042434 261 ------HTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGICKHTFGDH------------------GFIVSSC 315 (517)
Q Consensus 261 ------~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~i 315 (517)
..+.+|.++|.+++|+|+ +..+++|+.||.| +||+.+++++..+..| ...|.++
T Consensus 139 ~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v 217 (902)
T 2oaj_A 139 NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQS 217 (902)
T ss_dssp CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEE
T ss_pred cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEE
Confidence 234679999999999996 4789999999999 9999999998888655 4779999
Q ss_pred EEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEe------------------------------e----------------
Q 042434 316 AWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKA------------------------------W---------------- 348 (517)
Q Consensus 316 ~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~------------------------------~---------------- 348 (517)
+|+|+|.+|++++.||. |.+||... ..+.. |
T Consensus 218 ~fspdg~~lasgs~Dg~--i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 218 LYHPNSLHIITIHEDNS--LVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295 (902)
T ss_dssp EECTTSSEEEEEETTCC--EEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEcCCCCEEEEEECCCe--EEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence 99999999999999999 66666532 11100 0
Q ss_pred -------------e-C----------------------------cCC---------------------------------
Q 042434 349 -------------R-G----------------------------TRI--------------------------------- 353 (517)
Q Consensus 349 -------------~-~----------------------------~~~--------------------------------- 353 (517)
. . .+.
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~ 375 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE 375 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence 0 0 000
Q ss_pred --------------------------CceEEE----------------------------------EEccCCCEEEEEeC
Q 042434 354 --------------------------PKVLDL----------------------------------AVTPDGENLISVLS 373 (517)
Q Consensus 354 --------------------------~~i~~~----------------------------------~~~~~~~~l~~~~~ 373 (517)
..|+++ +|+|+++.+++|+.
T Consensus 376 l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~ 455 (902)
T 2oaj_A 376 IETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHS 455 (902)
T ss_dssp EEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEET
T ss_pred EEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecC
Confidence 011111 22456778888999
Q ss_pred CCcEEEEECCCceEE----e---------eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--------------
Q 042434 374 DKDIRILNLGTYAER----V---------ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW-------------- 426 (517)
Q Consensus 374 dg~i~i~d~~~~~~~----~---------~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~-------------- 426 (517)
|++|++||+.++... . ..|...|.+++|+|++++|++++.||+|++||+.+..
T Consensus 456 DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~ 535 (902)
T 2oaj_A 456 NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLE 535 (902)
T ss_dssp TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-------------
T ss_pred CCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccc
Confidence 999999998765411 0 1566789999999999999999999999999996541
Q ss_pred ------------------------------ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE-
Q 042434 427 ------------------------------EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE- 475 (517)
Q Consensus 427 ------------------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~- 475 (517)
.....+.+|... +.++.|+||| +||+|+.||+|++||++++..+.
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~---V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~ 611 (902)
T 2oaj_A 536 MNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGK---TSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYM 611 (902)
T ss_dssp --CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCS---EEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred eeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCc---EEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEE
Confidence 113445566655 5666679999 99999999999999998877654
Q ss_pred ----Eec-CCCCCeeEEEec-----CCC--CcEEEEeeCCCcEEEeCC
Q 042434 476 ----ILS-GHSMTVNCVSWN-----PKR--PKMLASASDDHTIRIWGP 511 (517)
Q Consensus 476 ----~~~-~h~~~v~~v~~~-----~~~--~~~l~s~~~dg~v~iw~~ 511 (517)
.+. +|.+.|++|+|+ ||| ..+|++|+.||+|++|++
T Consensus 612 ~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 612 ENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred eehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 233 899999999999 885 269999999999999998
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.4e-34 Score=305.26 Aligned_cols=319 Identities=14% Similarity=0.195 Sum_probs=259.6
Q ss_pred hccccccCCCCCc--cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEE
Q 042434 183 SQIDSCQYHNSSV--AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLK 260 (517)
Q Consensus 183 ~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~ 260 (517)
..+..+.+++... +++..++....|+......+..+.+|.+.|++++|+|++++|++|+.||.|++||+.++ ...
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~---~~~ 90 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG---EKV 90 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC---CEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEE
Confidence 3456667777665 33444455667776778889999999999999999999999999999999999999766 455
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC-cEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEE
Q 042434 261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG-ICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMC 338 (517)
Q Consensus 261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~ 338 (517)
..+.+|.+.|++++|+|++++|++++.||.|++||+.++ .....+..|...|.+++|+| ++..+++++.||. |.+|
T Consensus 91 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~--v~vw 168 (814)
T 3mkq_A 91 VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT--VKVW 168 (814)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE--EEEE
T ss_pred EEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe--EEEE
Confidence 677889999999999999999999999999999999887 67778889999999999999 8899999999999 8888
Q ss_pred eCCC-CeeEeeeCcCCCceEEEEEcc--CCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeC
Q 042434 339 DCDG-NEIKAWRGTRIPKVLDLAVTP--DGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLN 413 (517)
Q Consensus 339 ~~~~-~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~ 413 (517)
+..+ ........++...+.+++|+| ++.++++++.||.|++||+.++. .....+...+.+++|+|++..+++++.
T Consensus 169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 248 (814)
T 3mkq_A 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248 (814)
T ss_dssp ETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred ECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence 8764 444555555556899999999 99999999999999999998877 444557889999999999999999999
Q ss_pred CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc--EEEEecCCCcEEEEecCCCceeEE---------------
Q 042434 414 SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT--FIASGSENSQIYIWNRRNSKPIEI--------------- 476 (517)
Q Consensus 414 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~--------------- 476 (517)
||.|++||+.+. .....+..+... +.++.++|++. ++++++ ++.+.+|++..+.....
T Consensus 249 dg~v~vwd~~~~-~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 323 (814)
T 3mkq_A 249 DGTLKIWNSSTY-KVEKTLNVGLER---SWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNA 323 (814)
T ss_dssp TSCEEEEETTTC-SEEEEECCSSSS---EEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTS
T ss_pred CCeEEEEECCCC-cEEEEeecCCCc---EEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccc
Confidence 999999999876 566666666554 55556688887 455555 66688888764322111
Q ss_pred ----------------------------ecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 477 ----------------------------LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 477 ----------------------------~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
+..+...+.+++|+|+| .++++++ ||.+.+|++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 324 AASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNG-RFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp CTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTS-SEEEEEE-TTEEEEEETTT
T ss_pred cceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCC-CEEEEec-CCEEEEEECcc
Confidence 12345568899999999 6888887 89999998754
No 78
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.8e-35 Score=274.81 Aligned_cols=245 Identities=20% Similarity=0.250 Sum_probs=198.4
Q ss_pred EeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc--EEEEeCCCCCceEEEEEeC--CCCeEEEeeCCCceeEEE
Q 042434 262 TLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI--CKHTFGDHGFIVSSCAWFP--DSKRLVCGSSDTEKGIFM 337 (517)
Q Consensus 262 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~d~~v~i~~ 337 (517)
.+.+|.+.|++++|+|+|++|++|+.|++|++||+.++. .+..+.+|...|.+++|++ ++++|++|+.|++ |.+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~--v~i 85 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK--VII 85 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC--EEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE--EEE
Confidence 457899999999999999999999999999999998875 4677889999999999986 4899999999999 778
Q ss_pred EeCCCC---eeEeeeCcCCCceEEEEEccC--CCEEEEEeCCCcEEEEECCCce-----EEeeccCCCeeEEEEcCC---
Q 042434 338 CDCDGN---EIKAWRGTRIPKVLDLAVTPD--GENLISVLSDKDIRILNLGTYA-----ERVISEEHPITSLSVSVD--- 404 (517)
Q Consensus 338 ~~~~~~---~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~i~~~~~s~~--- 404 (517)
||.... ....+ ..+...|.+++|+|+ +.++++++.|+.|++||++... .....|...+.+++|+|+
T Consensus 86 Wd~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 86 WREENGTWEKSHEH-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp ECCSSSCCCEEEEE-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EECCCCcceEEEEc-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 887753 23333 344568999999998 7899999999999999998753 223356678999999997
Q ss_pred --------------CCEEEEEeCCCeEEEEEcCCCC--ccceEEeCcccCceEEEeecCCCCC----cEEEEecCCCcEE
Q 042434 405 --------------CKNFIVNLNSQEIHMWDVAGKW--EKPFKYTGHSQNKYVIRSCFGGLDG----TFIASGSENSQIY 464 (517)
Q Consensus 405 --------------~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~ 464 (517)
++++++++.|+.|++||++... .....+.+|... +..+.|+|++ .+|++|+.||+|+
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~---V~~v~~sp~~~~~~~~las~s~D~~v~ 241 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW---VRDVAWAPSIGLPTSTIASCSQDGRVF 241 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC---EEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc---eEEEEecCCCCCCCceEEEEcCCCeEE
Confidence 4789999999999999996542 344556677665 6667778986 8999999999999
Q ss_pred EEecCCC---c-eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 465 IWNRRNS---K-PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 465 iwd~~~~---~-~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
+||+.+. . ....+..|...|.+++|+|++ .+|++++.||+|++|+...
T Consensus 242 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 242 IWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEECSSTTCCCCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEEEECT
T ss_pred EEEccCccccchhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEECC
Confidence 9998763 1 233456789999999999999 7999999999999999763
No 79
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=276.29 Aligned_cols=255 Identities=18% Similarity=0.245 Sum_probs=210.3
Q ss_pred ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCe
Q 042434 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD--DTKLLTCGNAEV 290 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~ 290 (517)
+++..+.+|.+.|++++|+|++++||+|+.||.|+||++..+ .......+.+|...|++++|+|+ +++|++++.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 356678999999999999999999999999999999999632 44667788999999999999987 899999999999
Q ss_pred EEEEECCCCc--EEEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCCC--eeEeeeCcCCCceEEEEEcc-
Q 042434 291 LKLWDVETGI--CKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDGN--EIKAWRGTRIPKVLDLAVTP- 363 (517)
Q Consensus 291 i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~- 363 (517)
|++||+.+++ ....+..|...|.+++|+|+ +.++++++.|+. |.+|+.... ........+...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~--i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK--VSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE--EEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCc--EEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence 9999999987 77788889999999999999 999999999999 777777643 22223334456899999999
Q ss_pred ------------CCCEEEEEeCCCcEEEEECCCce------EEeeccCCCeeEEEEcCC---CCEEEEEeCCCeEEEEEc
Q 042434 364 ------------DGENLISVLSDKDIRILNLGTYA------ERVISEEHPITSLSVSVD---CKNFIVNLNSQEIHMWDV 422 (517)
Q Consensus 364 ------------~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~---~~~l~~~~~d~~i~~~d~ 422 (517)
++..+++++.||.|++||+++.. .....|...+.+++|+|+ ++++++++.||.|++||+
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 69999999999999999997654 234457889999999999 899999999999999999
Q ss_pred CCCCccce-EEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC
Q 042434 423 AGKWEKPF-KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN 470 (517)
Q Consensus 423 ~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 470 (517)
+....... ...........+..+.|+|+|++|++++.||.|++|++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 87522211 2222111223366777799999999999999999999874
No 80
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.2e-35 Score=283.96 Aligned_cols=283 Identities=16% Similarity=0.224 Sum_probs=226.1
Q ss_pred cEEEEEECCCCCEE-EEeeCCCcEEEEEecCCCee-eEEEEeccCCCCEEEEEECC-CCCeEEEEeCCCeEEEEECCCC-
Q 042434 224 EVWFVQFSNNGEYL-ASSSSDCSAIIWKVLEDSKL-TLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAEVLKLWDVETG- 299 (517)
Q Consensus 224 ~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~-~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~- 299 (517)
....++++|+...+ ++|+.||.|+||++...... .....+.+|.+.|.+++|+| ++++|++|+.||+|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 34468888877544 45788999999998644221 22345778999999999999 8999999999999999999988
Q ss_pred ------cEEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCeeEeee--CcCCCceEEEEEccCCCEEEE
Q 042434 300 ------ICKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEIKAWR--GTRIPKVLDLAVTPDGENLIS 370 (517)
Q Consensus 300 ------~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~ 370 (517)
+++..+.+|...|.+++|+|++ .+|++++.|+. |.+||.......... ..+...|.+++|+|+++.+++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 193 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV--ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT 193 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC--EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE--EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEE
Confidence 6677888999999999999998 69999999999 888998765544333 556678999999999999999
Q ss_pred EeCCCcEEEEECCCceE--Ee-eccCCC-eeEEEEcCCCCEEEEE---eCCCeEEEEEcCCCCccceEEe-CcccCceEE
Q 042434 371 VLSDKDIRILNLGTYAE--RV-ISEEHP-ITSLSVSVDCKNFIVN---LNSQEIHMWDVAGKWEKPFKYT-GHSQNKYVI 442 (517)
Q Consensus 371 ~~~dg~i~i~d~~~~~~--~~-~~~~~~-i~~~~~s~~~~~l~~~---~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~i 442 (517)
++.||.|++||++++.. .. ..+... +.++.|+|++.+++++ +.|+.|++||+++......... .+... +
T Consensus 194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---v 270 (402)
T 2aq5_A 194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG---V 270 (402)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSS---C
T ss_pred EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCc---e
Confidence 99999999999998872 22 344444 8999999999999999 7899999999987644333333 23333 4
Q ss_pred EeecCCCCCcEEE-EecCCCcEEEEecCCCce-eEEecC--CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 443 RSCFGGLDGTFIA-SGSENSQIYIWNRRNSKP-IEILSG--HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 443 ~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
..+.++|++++++ +|+.||.|++||+.++++ +..+.. |...|.+++|+|++ .+++ +.|+.+++|++.++
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~-~~~~--s~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKR-GLEV--NKCEIARFYKLHER 343 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGG-GSCG--GGTEEEEEEEEETT
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccc-ccce--ecceeEEEEEcCCC
Confidence 4556689999886 566799999999999884 545443 56999999999999 5655 45779999998764
No 81
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=277.54 Aligned_cols=284 Identities=10% Similarity=0.093 Sum_probs=226.0
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec-------------------------------------
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR------------------------------------- 264 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~------------------------------------- 264 (517)
..++.+++|+|+|++|+++ .++.|++||+.++.....+..+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4578899999999977766 57899999998876333333333
Q ss_pred -----------------cCCCCEEEEEECCCCCeE-EEEeCCCeEEEEECC--CCcEEEEeC--CCCCceEEEEEeCCCC
Q 042434 265 -----------------SHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWDVE--TGICKHTFG--DHGFIVSSCAWFPDSK 322 (517)
Q Consensus 265 -----------------~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~i~~~~~~~ 322 (517)
+|.+.|.+++|+|++++| ++++.||.|++||+. +++++..+. .+...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 344479999999999996 899999999999999 888888876 5678999999999999
Q ss_pred eEEEeeCCCceeEEEEeCCCCeeEe----eeCcCCCceEEEEEccC---CCEEEEEeCCCcEEEEECCCce-E-E-eecc
Q 042434 323 RLVCGSSDTEKGIFMCDCDGNEIKA----WRGTRIPKVLDLAVTPD---GENLISVLSDKDIRILNLGTYA-E-R-VISE 392 (517)
Q Consensus 323 ~l~~~~~d~~v~i~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~-~-~-~~~~ 392 (517)
+|++|+.+|. ++.|+........ ....+...|.+++|+|+ ++++++++.|+.|++||++++. . . ...+
T Consensus 163 ~l~~~~~~g~--v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h 240 (450)
T 2vdu_B 163 TVIIADKFGD--VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH 240 (450)
T ss_dssp EEEEEETTSE--EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred EEEEEeCCCc--EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence 9999999999 8888876543221 22234468999999999 9999999999999999998876 2 2 3468
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcc----------------------cCceEEEeecCCCC
Q 042434 393 EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS----------------------QNKYVIRSCFGGLD 450 (517)
Q Consensus 393 ~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----------------------~~~~~i~~~~~s~~ 450 (517)
...|.+++|+ +++++++++.|+.|++||+.++ .....+..+. .....+..+.++|+
T Consensus 241 ~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 241 KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp SSCEEEEEEC-STTEEEEEESSSEEEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 8899999999 9999999999999999999876 4444444321 11233556677899
Q ss_pred CcEEEEec-CCCcEEEEec--CCC---ceeEEecCCCCCeeEEEecCCCCcEEEEeeC-------CCcEEEeCCCC
Q 042434 451 GTFIASGS-ENSQIYIWNR--RNS---KPIEILSGHSMTVNCVSWNPKRPKMLASASD-------DHTIRIWGPCQ 513 (517)
Q Consensus 451 ~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~-------dg~v~iw~~~~ 513 (517)
++++++++ .|+.|++|++ .++ +.+..+.+| +.|.+++|+|++ ++++++. +..|.+|.+..
T Consensus 319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~--~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE--FQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE--EEEEECCTTCCSSCCCSEEEEEEET
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc--EEEEEecccCCCCCCcceEEEEEEc
Confidence 99999998 8999999999 666 677888888 899999999965 4554433 55688887653
No 82
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.9e-33 Score=292.33 Aligned_cols=267 Identities=19% Similarity=0.214 Sum_probs=214.9
Q ss_pred cccccCCCcccccCCC------cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCC
Q 042434 196 AISLYEDHCCGRDQIP------TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNP 269 (517)
Q Consensus 196 ~~~~~~~~~~~~~~~~------~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~ 269 (517)
.++.+.|+....+... ......+.+|.+.|++++|+|+|++|++|+.||+|+|||+.++ .....+.+|...
T Consensus 398 l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~---~~~~~~~~h~~~ 474 (694)
T 3dm0_A 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG---VSTRRFVGHTKD 474 (694)
T ss_dssp EEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSC
T ss_pred EEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC---cceeEEeCCCCC
Confidence 4455555554444332 2356788999999999999999999999999999999999765 455778899999
Q ss_pred EEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe---CCCCCceEEEEEeCCC--CeEEEeeCCCceeEEEEeCCCCe
Q 042434 270 VSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF---GDHGFIVSSCAWFPDS--KRLVCGSSDTEKGIFMCDCDGNE 344 (517)
Q Consensus 270 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~--~~l~~~~~d~~v~i~~~~~~~~~ 344 (517)
|.+++|+|++++|++|+.|++|++||.......... .+|...|.+++|+|++ ..+++++.|+. |.+||..+..
T Consensus 475 v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~--v~vwd~~~~~ 552 (694)
T 3dm0_A 475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT--VKVWNLSNCK 552 (694)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSC--EEEEETTTCC
T ss_pred EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCe--EEEEECCCCc
Confidence 999999999999999999999999998655433332 3688899999999986 58999999999 8888988766
Q ss_pred eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 042434 345 IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVA 423 (517)
Q Consensus 345 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~ 423 (517)
.......|.+.|.+++|+|+++++++++.||.|++||+++++ .........+.+++|+|++.++++++ ++.|++||+.
T Consensus 553 ~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~ 631 (694)
T 3dm0_A 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLE 631 (694)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETT
T ss_pred EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECC
Confidence 655555566799999999999999999999999999999887 44455667899999999988777665 5669999998
Q ss_pred CCCccceEEeCccc----------------CceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 424 GKWEKPFKYTGHSQ----------------NKYVIRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 424 ~~~~~~~~~~~~~~----------------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
+. .....+..+.. ....+.++.|+|+|++|++|+.||.|++||+.
T Consensus 632 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 632 SK-SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TT-EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CC-CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 76 44333322111 11124566779999999999999999999985
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-33 Score=271.14 Aligned_cols=272 Identities=18% Similarity=0.228 Sum_probs=218.5
Q ss_pred ccccCCCcccccCCCcccEEEecc-ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE
Q 042434 197 ISLYEDHCCGRDQIPTETVQILTE-HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW 275 (517)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~l~~-h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~ 275 (517)
....++....|+....+....+.. |.+.|++++|+|++++|++|+.||.|++||+.++ .....+.+|...|.+++|
T Consensus 108 ~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~ 184 (401)
T 4aez_A 108 AVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ---TKLRTMAGHQARVGCLSW 184 (401)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEE
T ss_pred EEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC---eEEEEecCCCCceEEEEE
Confidence 333444555666666677766665 8999999999999999999999999999999765 455778899999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEECC-CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCC
Q 042434 276 SPDDTKLLTCGNAEVLKLWDVE-TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP 354 (517)
Q Consensus 276 s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~ 354 (517)
+++.+++++.||.|++||+. .+.....+..|...|.+++|+|++.+|++|+.|+. |.+||............+..
T Consensus 185 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~--v~iwd~~~~~~~~~~~~~~~ 260 (401)
T 4aez_A 185 --NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV--VQIWDARSSIPKFTKTNHNA 260 (401)
T ss_dssp --ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC--EEEEETTCSSEEEEECCCSS
T ss_pred --CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe--EEEccCCCCCccEEecCCcc
Confidence 56799999999999999998 56678888899999999999999999999999999 88899886555444444556
Q ss_pred ceEEEEEccCCC-EEEEEe--CCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEE--eCCCeEEEEEcCCCC-c
Q 042434 355 KVLDLAVTPDGE-NLISVL--SDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVN--LNSQEIHMWDVAGKW-E 427 (517)
Q Consensus 355 ~i~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~--~~d~~i~~~d~~~~~-~ 427 (517)
.|.+++|+|++. .+++++ .|+.|++||+.++. .....+...+.+++|+|+++.++++ +.||.|++||+.+.. .
T Consensus 261 ~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~ 340 (401)
T 4aez_A 261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT 340 (401)
T ss_dssp CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE
T ss_pred eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce
Confidence 899999999775 555554 69999999999887 5555677889999999999999995 489999999997752 2
Q ss_pred cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec
Q 042434 428 KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS 478 (517)
Q Consensus 428 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 478 (517)
....+.+|... +..+.++|+|.+|++++.||.|++||+.+++.+....
T Consensus 341 ~~~~~~~h~~~---v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 341 KQVDIPAHDTR---VLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEEEECCSSC---CCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred eEEEecCCCCC---EEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 23345566655 4455669999999999999999999999998776543
No 84
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=271.47 Aligned_cols=248 Identities=17% Similarity=0.253 Sum_probs=208.4
Q ss_pred EEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC--CCcEEEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeE
Q 042434 260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE--TGICKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGI 335 (517)
Q Consensus 260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i 335 (517)
...+.+|.+.|++++|+|++++|++|+.||.|++||+. +++.+..+..|...|++++|+++ +.+|++++.||. |
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~--v 81 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK--V 81 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC--E
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE--E
Confidence 45678899999999999999999999999999999998 56777888899999999999987 999999999999 6
Q ss_pred EEEeCCCCe--eEeeeCcCCCceEEEEEccC--CCEEEEEeCCCcEEEEECCCce----EEeeccCCCeeEEEEcC----
Q 042434 336 FMCDCDGNE--IKAWRGTRIPKVLDLAVTPD--GENLISVLSDKDIRILNLGTYA----ERVISEEHPITSLSVSV---- 403 (517)
Q Consensus 336 ~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~---- 403 (517)
.+|+..... .......+...|.+++|+|+ +..+++++.|+.|++||+++.. .....+...+.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 667766543 33333445568999999999 9999999999999999998873 34557788999999999
Q ss_pred ---------CCCEEEEEeCCCeEEEEEcCCCCc---cceEEeCcccCceEEEeecCCCC---CcEEEEecCCCcEEEEec
Q 042434 404 ---------DCKNFIVNLNSQEIHMWDVAGKWE---KPFKYTGHSQNKYVIRSCFGGLD---GTFIASGSENSQIYIWNR 468 (517)
Q Consensus 404 ---------~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~iwd~ 468 (517)
++..+++++.|+.|++||++.... ....+.+|... +.++.|+|+ +.+|++++.||.|++||+
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~---v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW---VRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC---EEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc---EeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 699999999999999999976532 23445556554 666777999 899999999999999999
Q ss_pred CCCc---eeEE--ecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 469 RNSK---PIEI--LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 469 ~~~~---~~~~--~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
.++. .... ...|...|++++|+|++ .+|++++.||.|++|++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEEEEE
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEeCCC
Confidence 9874 2222 23488999999999999 7999999999999999874
No 85
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8.8e-33 Score=261.84 Aligned_cols=267 Identities=19% Similarity=0.296 Sum_probs=216.5
Q ss_pred EeeCCCcEE--EEEecCCCeeeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCCCc-----EEEEeCCCCC
Q 042434 239 SSSSDCSAI--IWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVETGI-----CKHTFGDHGF 310 (517)
Q Consensus 239 t~~~dg~i~--iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~ 310 (517)
+|...|+.. ++... .++.....++.+|.+.|++++|+|+ +++|+||+.||+|++||+.+++ +...+.+|..
T Consensus 9 ~g~d~g~~~~~~~~~~-~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~ 87 (340)
T 4aow_A 9 SGVDLGTENLYFQSMM-TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSH 87 (340)
T ss_dssp ------------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSS
T ss_pred cccCCCCccEEEEEcc-CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCC
Confidence 444445433 33332 3455677889999999999999997 5899999999999999987653 5677889999
Q ss_pred ceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---E
Q 042434 311 IVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---E 387 (517)
Q Consensus 311 ~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~ 387 (517)
.|.+++|+|++++|++++.|+. +..|+................+....+++++..+++++.|+.+++||..... .
T Consensus 88 ~V~~~~~s~dg~~l~s~~~d~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~ 165 (340)
T 4aow_A 88 FVSDVVISSDGQFALSGSWDGT--LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 165 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSE--EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred CEEEEEECCCCCEEEEEccccc--ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEE
Confidence 9999999999999999999999 8888888776666666666688999999999999999999999999998765 2
Q ss_pred EeeccCCCeeEEEEcCCC--CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEE
Q 042434 388 RVISEEHPITSLSVSVDC--KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYI 465 (517)
Q Consensus 388 ~~~~~~~~i~~~~~s~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 465 (517)
....+...+..++|++++ ..+++++.|+.|++||+++. .....+.+|... +.++.++|++++|++|+.||.|++
T Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~h~~~---v~~~~~s~~~~~l~s~s~Dg~i~i 241 (340)
T 4aow_A 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGY---LNTVTVSPDGSLCASGGKDGQAML 241 (340)
T ss_dssp CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEEECCCSSC---EEEEEECTTSSEEEEEETTCEEEE
T ss_pred EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeEecCCCCc---EEEEEECCCCCEEEEEeCCCeEEE
Confidence 334567789999998865 56888999999999999887 667777777765 556667999999999999999999
Q ss_pred EecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 466 WNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 466 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
||+.+++++..+.. ...|.+++|+|++ .+++++.|+.|++||+.++.
T Consensus 242 wd~~~~~~~~~~~~-~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 242 WDLNEGKHLYTLDG-GDIINALCFSPNR--YWLCAATGPSIKIWDLEGKI 288 (340)
T ss_dssp EETTTTEEEEEEEC-SSCEEEEEECSSS--SEEEEEETTEEEEEETTTTE
T ss_pred EEeccCceeeeecC-CceEEeeecCCCC--ceeeccCCCEEEEEECCCCe
Confidence 99999999998875 4689999999987 46677789999999997653
No 86
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-33 Score=267.12 Aligned_cols=286 Identities=17% Similarity=0.220 Sum_probs=235.5
Q ss_pred HHhccccccCCCCCc-cccc-cCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeee
Q 042434 181 VTSQIDSCQYHNSSV-AISL-YEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLT 258 (517)
Q Consensus 181 ~~~q~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~ 258 (517)
+...+.++.+++... .+.. .++....|+....+.+..+.+|.+.|++++|+|++++|++++.||.|++||+.++..
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-- 108 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQC-- 108 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE--
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--
Confidence 345567777777655 3333 344566677777889999999999999999999999999999999999999976643
Q ss_pred EEEEeccCCCCEEEEEECCCCCeEEEEeCC-----CeEEEEECCCCc-----------EEEEeCCCCC--ceEEEEEeCC
Q 042434 259 LKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-----EVLKLWDVETGI-----------CKHTFGDHGF--IVSSCAWFPD 320 (517)
Q Consensus 259 ~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~-----------~~~~~~~~~~--~v~~i~~~~~ 320 (517)
...+. |...|.+++|+|+++++++++.+ |.|.+||+.++. ....+..|.. .+.+++|+|+
T Consensus 109 -~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (369)
T 3zwl_B 109 -VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK 186 (369)
T ss_dssp -EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG
T ss_pred -EEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC
Confidence 34444 88999999999999999999999 999999997653 2333445555 8999999999
Q ss_pred CCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeE
Q 042434 321 SKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITS 398 (517)
Q Consensus 321 ~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~ 398 (517)
++.+++++.||. |.+||... .........+...|.+++|+|+++++++++.|+.|++||+++.. .....+...+..
T Consensus 187 ~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 264 (369)
T 3zwl_B 187 GKYIIAGHKDGK--ISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNT 264 (369)
T ss_dssp GCEEEEEETTSE--EEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEE
T ss_pred CCEEEEEcCCCE--EEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCcee
Confidence 999999999999 88888876 34433333445689999999999999999999999999999877 555568889999
Q ss_pred EEEcCCCCEEEEEeCCC--------------eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEE
Q 042434 399 LSVSVDCKNFIVNLNSQ--------------EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIY 464 (517)
Q Consensus 399 ~~~s~~~~~l~~~~~d~--------------~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 464 (517)
++|+|+++++++++.++ .+++||.... .....+.+|... +..+.|+|++++|++++.||.|+
T Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~---v~~~~~s~~~~~l~s~~~dg~v~ 340 (369)
T 3zwl_B 265 AVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQGHFGP---LNTVAISPQGTSYASGGEDGFIR 340 (369)
T ss_dssp EEECSSSSEEEEEECCC-------------CEEEEEETTTC-CEEEEEECCSSC---EEEEEECTTSSEEEEEETTSEEE
T ss_pred EEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-cchhheecccCc---EEEEEECCCCCEEEEEcCCCeEE
Confidence 99999999999999988 8999999877 666777777765 66667799999999999999999
Q ss_pred EEecCCCceeEE
Q 042434 465 IWNRRNSKPIEI 476 (517)
Q Consensus 465 iwd~~~~~~~~~ 476 (517)
+|++.++.....
T Consensus 341 iw~~~~~~~~~~ 352 (369)
T 3zwl_B 341 LHHFEKSYFDFK 352 (369)
T ss_dssp EEEECHHHHTCC
T ss_pred EEECccccchhH
Confidence 999987654433
No 87
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.8e-34 Score=274.58 Aligned_cols=284 Identities=11% Similarity=0.080 Sum_probs=226.5
Q ss_pred HhccccccCCCCCccccccCCCcccccCCCcc------cEEEeccccCcEEEEEECCC----C---CEEEEeeCCCcEEE
Q 042434 182 TSQIDSCQYHNSSVAISLYEDHCCGRDQIPTE------TVQILTEHKNEVWFVQFSNN----G---EYLASSSSDCSAII 248 (517)
Q Consensus 182 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~h~~~v~~~~~s~~----~---~~l~t~~~dg~i~i 248 (517)
...+.++.+++.....+..++....|+....+ ....+.+|...|++++|+|+ | ++|++|+.||.|++
T Consensus 16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i 95 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 95 (397)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred hcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence 34566677776322334444445555555555 68899999999999999999 9 99999999999999
Q ss_pred EEecCCCe--eeEEEEeccC-----CCCEEEEEEC----CCCCe-EEEEeCCCeEEEEECCC------CcEEE-----Ee
Q 042434 249 WKVLEDSK--LTLKHTLRSH-----QNPVSFVAWS----PDDTK-LLTCGNAEVLKLWDVET------GICKH-----TF 305 (517)
Q Consensus 249 w~~~~~~~--~~~~~~~~~h-----~~~v~~l~~s----~~~~~-l~s~~~dg~i~iwd~~~------~~~~~-----~~ 305 (517)
|++.++.. ......+..| ...|.+++|+ |++++ |++++.||.|++||+.+ ++.+. .+
T Consensus 96 w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (397)
T 1sq9_A 96 YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 175 (397)
T ss_dssp EEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEE
T ss_pred EEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCccee
Confidence 99976643 1114667778 5999999999 99999 99999999999999988 66555 55
Q ss_pred -------CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCc--C---CCceEEEEEccCCCEEEEEe
Q 042434 306 -------GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGT--R---IPKVLDLAVTPDGENLISVL 372 (517)
Q Consensus 306 -------~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~--~---~~~i~~~~~~~~~~~l~~~~ 372 (517)
..|...|.+++|+|++ .+++++.|+. |.+||..... +..+... + ...+.+++|+|+++++++++
T Consensus 176 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~ 252 (397)
T 1sq9_A 176 QGTVESPMTPSQFATSVDISERG-LIATGFNNGT--VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 252 (397)
T ss_dssp EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE--EEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE
T ss_pred eeeeccccCCCCCceEEEECCCc-eEEEEeCCCc--EEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe
Confidence 4588999999999999 9999999999 8888987544 4444440 3 56899999999999999999
Q ss_pred CC---CcEEEEECCCce--EEeec-------------cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe-
Q 042434 373 SD---KDIRILNLGTYA--ERVIS-------------EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT- 433 (517)
Q Consensus 373 ~d---g~i~i~d~~~~~--~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~- 433 (517)
.| |.|++||+++.+ ..... +...+.+++|+|+++++++++.|+.|++||+.+. .....+.
T Consensus 253 ~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~ 331 (397)
T 1sq9_A 253 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNM 331 (397)
T ss_dssp EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEEC
T ss_pred cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEec
Confidence 99 999999998877 33334 7889999999999999999999999999999877 6666676
Q ss_pred -----Cc---------------ccCceEEEeecCCCCC----------cEEEEecCCCcEEEEecCCCc
Q 042434 434 -----GH---------------SQNKYVIRSCFGGLDG----------TFIASGSENSQIYIWNRRNSK 472 (517)
Q Consensus 434 -----~~---------------~~~~~~i~~~~~s~~~----------~~l~~~~~dg~i~iwd~~~~~ 472 (517)
+| .. .+..+.|+|++ ++|++++.||.|++||+.+|+
T Consensus 332 ~~~~~~~~~~~~~g~~~~~~~~~~---~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 332 HCDDIEIEEDILAVDEHGDSLAEP---GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CGGGCSSGGGCCCBCTTSCBCSSC---CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccCcccchhhhhccccccccccCC---ceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 55 33 36667778998 799999999999999998764
No 88
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=7.7e-33 Score=270.85 Aligned_cols=248 Identities=18% Similarity=0.281 Sum_probs=210.0
Q ss_pred EEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEECCC----------CcEEEEeCCCCCceEEEEEeCCCC-eEEEee
Q 042434 261 HTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWDVET----------GICKHTFGDHGFIVSSCAWFPDSK-RLVCGS 328 (517)
Q Consensus 261 ~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~ 328 (517)
.....|.+.|++++|+|+ +.+|++++.||.|++||+.+ ......+..|...|.+++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997 68999999999999999976 567778889999999999999988 999999
Q ss_pred CCCceeEEEEeCCCCe-----e--EeeeCcCCCceEEEEEcc-CCCEEEEEeCCCcEEEEECCCc---e--EEeeccCCC
Q 042434 329 SDTEKGIFMCDCDGNE-----I--KAWRGTRIPKVLDLAVTP-DGENLISVLSDKDIRILNLGTY---A--ERVISEEHP 395 (517)
Q Consensus 329 ~d~~v~i~~~~~~~~~-----~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~---~--~~~~~~~~~ 395 (517)
.||. |.+|+..... + ......+...|.+++|+| ++..+++++.||.|++||+++. . .....+...
T Consensus 202 ~dg~--i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 202 DDHT--ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279 (430)
T ss_dssp TTSC--EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred CCCe--EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence 9999 7778876511 1 122234556899999999 6789999999999999999876 2 344578889
Q ss_pred eeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc-EEEEecCCCcEEEEecCC---
Q 042434 396 ITSLSVSVDCK-NFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT-FIASGSENSQIYIWNRRN--- 470 (517)
Q Consensus 396 i~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~--- 470 (517)
+.+++|+|++. .+++++.||.|++||++........+.+|... +..+.|+|+++ ++++++.||.|++||+..
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~---v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE---IFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC---EEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC---EEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 99999999987 58899999999999998865677788887765 55666789884 799999999999999987
Q ss_pred -----------CceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 471 -----------SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 471 -----------~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
.+++..+.+|...|++++|+|+++.++++++.||.|+||++..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 3677888899999999999999955999999999999999864
No 89
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.3e-33 Score=270.28 Aligned_cols=281 Identities=15% Similarity=0.195 Sum_probs=223.2
Q ss_pred HhccccccCCCC----C-c-cccccCCCcccccCCCcccEEEecc-----ccCcEEEEEECCC----CCEEEEeeCCCcE
Q 042434 182 TSQIDSCQYHNS----S-V-AISLYEDHCCGRDQIPTETVQILTE-----HKNEVWFVQFSNN----GEYLASSSSDCSA 246 (517)
Q Consensus 182 ~~q~~~~~~~~~----~-~-~~~~~~~~~~~~~~~~~~~~~~l~~-----h~~~v~~~~~s~~----~~~l~t~~~dg~i 246 (517)
...+..+.|++. . . ..+..++....|+....+.+..+.. |...|++++|+|+ |.+|++|+.||.|
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i 97 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII 97 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE
Confidence 445666777752 2 2 3444455556666665666666664 5578999999998 7799999999999
Q ss_pred EEEEecCCCeeeEEEEeccCCCCEEEEEECC-CCCeEEEEeCCCeEEEEECCCCcEEEEe---CCCCCceEEEEEeCCCC
Q 042434 247 IIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAEVLKLWDVETGICKHTF---GDHGFIVSSCAWFPDSK 322 (517)
Q Consensus 247 ~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~~~~ 322 (517)
++||+.++ .....+.+|...|.+++|+| ++++|++++.||.|++||+.+++.+..+ ..|...|.+++|+|+++
T Consensus 98 ~v~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (366)
T 3k26_A 98 RIINPITM---QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 174 (366)
T ss_dssp EEECTTTC---CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSS
T ss_pred EEEEchhc---eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCC
Confidence 99999765 45567889999999999999 8999999999999999999999999888 68999999999999999
Q ss_pred eEEEeeCCCceeEEEEeCCCCeeEe-e---------------------------eCcCCCceEEEEEccCCCEEEEEeCC
Q 042434 323 RLVCGSSDTEKGIFMCDCDGNEIKA-W---------------------------RGTRIPKVLDLAVTPDGENLISVLSD 374 (517)
Q Consensus 323 ~l~~~~~d~~v~i~~~~~~~~~~~~-~---------------------------~~~~~~~i~~~~~~~~~~~l~~~~~d 374 (517)
+|++++.||. +.+||........ + ...+...|.+++|+ ++++++++.|
T Consensus 175 ~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 250 (366)
T 3k26_A 175 KIMSCGMDHS--LKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE 250 (366)
T ss_dssp EEEEEETTSC--EEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred EEEEecCCCC--EEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence 9999999999 8888877532211 1 11255689999998 7799999999
Q ss_pred CcEEEEECCCce----------------EEeeccCCCeeEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCc---cceEEe
Q 042434 375 KDIRILNLGTYA----------------ERVISEEHPITSLSVSVD--CKNFIVNLNSQEIHMWDVAGKWE---KPFKYT 433 (517)
Q Consensus 375 g~i~i~d~~~~~----------------~~~~~~~~~i~~~~~s~~--~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~ 433 (517)
+.|++||+.+.. .....+...+.+++|+|+ ++++++++.||.|++||+.+... ....+.
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 330 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT 330 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc
Confidence 999999987652 233456778999999999 99999999999999999987632 223455
Q ss_pred CcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC
Q 042434 434 GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN 470 (517)
Q Consensus 434 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 470 (517)
+|.. ...+..+.|+|++++|++++.||.|++||+.+
T Consensus 331 ~~~~-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 331 HHKC-GAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CTTC-CSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccc-CCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 5521 12366677799999999999999999999853
No 90
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-34 Score=282.56 Aligned_cols=269 Identities=10% Similarity=-0.010 Sum_probs=202.3
Q ss_pred CcccEEEeccccCcEEEEEECCCC---------CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCe
Q 042434 211 PTETVQILTEHKNEVWFVQFSNNG---------EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTK 281 (517)
Q Consensus 211 ~~~~~~~l~~h~~~v~~~~~s~~~---------~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 281 (517)
+......+. +.+.|++++|+|++ ++||+|+.++.. -..+|+++.
T Consensus 123 ~~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~~ 175 (524)
T 2j04_B 123 GKRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLEM 175 (524)
T ss_dssp CCSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------
T ss_pred CCcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhhh
Confidence 344444555 78999999999987 799999876420 013689999
Q ss_pred EEEEeCCCeEEEEECCCCcEE----EEeCCCCCceEEEEEeCC------CCeEEEeeCCCceeEEEEeCCCCee------
Q 042434 282 LLTCGNAEVLKLWDVETGICK----HTFGDHGFIVSSCAWFPD------SKRLVCGSSDTEKGIFMCDCDGNEI------ 345 (517)
Q Consensus 282 l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~i~~~~~------~~~l~~~~~d~~v~i~~~~~~~~~~------ 345 (517)
+++++.|++|+|||+.+++.. ..+..|...|.+++|+|+ +.+|++++.||+ |.+|+......
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgt--vrlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGT--INFLEIIDNATDVHVFK 253 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSC--EEEEECCCCSSSSSEEE
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCe--EEEEEcCCCccccccce
Confidence 999999999999999887642 345577889999999997 579999999999 66777653311
Q ss_pred ------EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEE--EEcCCC-CEEEEEeC
Q 042434 346 ------KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA---ERVISEEHPITSL--SVSVDC-KNFIVNLN 413 (517)
Q Consensus 346 ------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~--~~s~~~-~~l~~~~~ 413 (517)
..+. .+...|.+++|++++ .|++|+.||+|++||+++.. .....|...|.++ +|+|++ .+|++++.
T Consensus 254 ~~~~p~~~l~-~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~ 331 (524)
T 2j04_B 254 MCEKPSLTLS-LADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV 331 (524)
T ss_dssp CCCSCSEEEC-CTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred eecCceEEEE-cCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence 1222 344689999999864 89999999999999998754 3456788899999 578887 89999999
Q ss_pred CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCC
Q 042434 414 SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR 493 (517)
Q Consensus 414 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~ 493 (517)
|++|++||+++. .....+.+|..... +.++.|+|++..+++++.|++|++||++++.++.++.+|.+.|++|+|+|++
T Consensus 332 D~tvklWD~~~~-~~~~~~~~~~~~~~-v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g 409 (524)
T 2j04_B 332 DGYFYIFNPKDI-ATTKTTVSRFRGSN-LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLH 409 (524)
T ss_dssp TSEEEEECGGGH-HHHCEEEEECSCCS-CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSC
T ss_pred CCeEEEEECCCC-CcccccccccccCc-ccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCC
Confidence 999999999875 44455555543211 3455679999999999999999999999999989999999999999999999
Q ss_pred CcEEEEeeCCCcEEEeCCCC
Q 042434 494 PKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 494 ~~~l~s~~~dg~v~iw~~~~ 513 (517)
.+|++|+.||+|++|++..
T Consensus 410 -~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 410 -PMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp -CBCEEEETTTEEECCBSCS
T ss_pred -CeEEEEECCCEEEEEechH
Confidence 6899999999999999764
No 91
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.2e-32 Score=265.72 Aligned_cols=278 Identities=19% Similarity=0.263 Sum_probs=219.9
Q ss_pred CCCcccccCCCcccEEEe--ccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC
Q 042434 201 EDHCCGRDQIPTETVQIL--TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD 278 (517)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l--~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 278 (517)
+.....|+...++....+ .+|.+.|++++|+|+|++||+|+.||.|+|||+.++ ..+..+.+|...+.+++|+
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~---~~~~~~~~h~~~v~~~s~~-- 198 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KRLRNMTSHSARVGSLSWN-- 198 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEE--
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC---cEEEEEeCCCCceEEEeeC--
Confidence 555667777777777665 468889999999999999999999999999999766 5667889999999998885
Q ss_pred CCeEEEEeCCCeEEEEECCCC-cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe----eEeeeCcCC
Q 042434 279 DTKLLTCGNAEVLKLWDVETG-ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE----IKAWRGTRI 353 (517)
Q Consensus 279 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~----~~~~~~~~~ 353 (517)
+..|++|+.|+.+++||.... ..+..+.+|...+..+.|+|++.++++++.|+. +.+|+..... .......+.
T Consensus 199 ~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~--v~i~~~~~~~~~~~~~~~~~~~~ 276 (420)
T 4gga_A 199 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL--VNVWPSAPGEGGWVPLQTFTQHQ 276 (420)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC--EEEEESSCCSSCSCCSEEECCCS
T ss_pred CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeecccc--ceEEeeccccccceeeeeecccC
Confidence 679999999999999998764 456778899999999999999999999999999 7777765322 122233445
Q ss_pred CceEEEEEccCCC-EEEE--EeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEe--CCCeEEEEEcCCCCc
Q 042434 354 PKVLDLAVTPDGE-NLIS--VLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNL--NSQEIHMWDVAGKWE 427 (517)
Q Consensus 354 ~~i~~~~~~~~~~-~l~~--~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~~ 427 (517)
..|.+++|+|++. .+++ |+.|+.|++||+.++. .........+.++.|+|+++.+++++ .|+.|++||+.+. .
T Consensus 277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~ 355 (420)
T 4gga_A 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-A 355 (420)
T ss_dssp SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-C
T ss_pred CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-c
Confidence 6899999999765 4444 4579999999999988 55566777899999999999998875 6899999999887 7
Q ss_pred cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEe
Q 042434 428 KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSW 489 (517)
Q Consensus 428 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 489 (517)
.+..+.+|... |.++.|+|+|++|++|+.||+|++||+....+......+...+....+
T Consensus 356 ~v~~l~gH~~~---V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 356 KVAELKGHTSR---VLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp EEEEECCCSSC---EEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred EEEEEcCCCCC---EEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 78888898876 666677999999999999999999999887777666655554444333
No 92
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-34 Score=273.87 Aligned_cols=263 Identities=8% Similarity=0.031 Sum_probs=208.0
Q ss_pred eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 042434 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE 297 (517)
Q Consensus 218 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 297 (517)
-+.-...|.+++|||||+++|+++.|++|+ |.... ..+.+|...|.+++|+|+| .++.+.+|+.
T Consensus 11 ~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~------~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~- 74 (588)
T 2j04_A 11 RKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA------KDINCNSKNLFHVKEFPLE-------FENKLDFELA- 74 (588)
T ss_dssp SCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC------SCCSSBGGGTEEEEEECCC-------CCCTTTTSCC-
T ss_pred HhHhhccEEEEEECCCCCEEEEEcCCceee--ccccc------ceecCCCccEEEEEECCCC-------CcceEEEEeC-
Confidence 345668899999999999999999999999 65433 2347899999999999998 4555555554
Q ss_pred CCcEEEEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCC----CceEEEEEccCCCEEEEEe
Q 042434 298 TGICKHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRI----PKVLDLAVTPDGENLISVL 372 (517)
Q Consensus 298 ~~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~ 372 (517)
+....+. .|...|.+++|+|+|..|++++.||. +.+|+..+ .+..+. ++. ..+.+++|+|||++|++|+
T Consensus 75 --~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~--V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs 148 (588)
T 2j04_A 75 --QQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGN--VSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN 148 (588)
T ss_dssp --CSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSC--EEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred --CCceEeecCCCCcEEEEEECCCCCEEEEEeCCCc--EEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEc
Confidence 3222333 55889999999999999999999999 77788554 444444 332 2599999999999999999
Q ss_pred CCCcEEEEECCCceE--------Ee-----eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc--ceEE-eCcc
Q 042434 373 SDKDIRILNLGTYAE--------RV-----ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK--PFKY-TGHS 436 (517)
Q Consensus 373 ~dg~i~i~d~~~~~~--------~~-----~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~-~~~~ 436 (517)
.||+|++||+.++.. .. ..|...|.+++|+|+| +++++.|+.|++||+.+.... ...+ .+|.
T Consensus 149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~ 226 (588)
T 2j04_A 149 EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR 226 (588)
T ss_dssp TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence 999999999988731 22 3456799999999999 889999999999999876321 2344 3555
Q ss_pred cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEe--cCCCCcEEEEeeCCCcEEEeCCC
Q 042434 437 QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSW--NPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 437 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~--~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
.. +..+.|+ |+.||+++ +|+|++||+.+++......+|.+.|.+++| +|++ ..+++++.||+ ++|..+
T Consensus 227 ~~---V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~-~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 227 RK---ITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKES-TILLMSNKTSY-KVLLED 296 (588)
T ss_dssp SC---CCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSC-EEEEECSSCEE-EEEESS
T ss_pred Cc---EEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCC-CEEEEEcCCCC-EEEeec
Confidence 44 4444456 58899887 699999999988874444489999999999 9999 79999999999 999864
No 93
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-33 Score=290.65 Aligned_cols=267 Identities=21% Similarity=0.304 Sum_probs=200.4
Q ss_pred EEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCeEE
Q 042434 215 VQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD--DTKLLTCGNAEVLK 292 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~ 292 (517)
+..+.+|.+.|++++|+|+|++|++|+.||.|+||++..+ .......+.+|.++|++++|+|+ +++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 4578899999999999999999999999999999999643 44667788999999999999988 99999999999999
Q ss_pred EEECCCCc--EEEEeCCCCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCCC--eeEeeeCcCCCceEEEEEccCCC
Q 042434 293 LWDVETGI--CKHTFGDHGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDGN--EIKAWRGTRIPKVLDLAVTPDGE 366 (517)
Q Consensus 293 iwd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~ 366 (517)
+||+.+++ ....+..|...|.+++|+|+ +..+++|+.||. |.+||.... ........+...|.+++|+|...
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~--I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 158 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK--VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE--EEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCc--EEEEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence 99999887 66777788999999999998 888888888888 666666543 11112222334566666666310
Q ss_pred EEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---ccceEEeCcccCceEEE
Q 042434 367 NLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKW---EKPFKYTGHSQNKYVIR 443 (517)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~i~ 443 (517)
.. + ......+++..+++++.||.|++||+++.. .....+.+|... +.
T Consensus 159 ~~-----~----------------------~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~---V~ 208 (753)
T 3jro_A 159 EE-----D----------------------GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW---VR 208 (753)
T ss_dssp -----------------------------------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC---EE
T ss_pred cc-----c----------------------cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc---EE
Confidence 00 0 000012356777777777777777776542 223345556554 66
Q ss_pred eecCCCC---CcEEEEecCCCcEEEEecCCCc-----eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 444 SCFGGLD---GTFIASGSENSQIYIWNRRNSK-----PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 444 ~~~~s~~---~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
++.++|+ +.++++|+.||.|++||+.++. .+....+|.+.|++++|+|++ .++++++.||.|++|++..+.
T Consensus 209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECCBCCSSS
T ss_pred EEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEEecCCCC
Confidence 6677999 9999999999999999998874 334445688999999999999 799999999999999998543
No 94
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.6e-32 Score=264.78 Aligned_cols=250 Identities=14% Similarity=0.192 Sum_probs=209.3
Q ss_pred eEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCCCcEEEEeC--CCCCceEEEEEeC-CCCeEEEeeCCCce
Q 042434 258 TLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVETGICKHTFG--DHGFIVSSCAWFP-DSKRLVCGSSDTEK 333 (517)
Q Consensus 258 ~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~-~~~~l~~~~~d~~v 333 (517)
.....+.+|...|.+++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++.+|++++.|+.
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~- 142 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA- 142 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE-
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE-
Confidence 4556778999999999999999 999999999999999999988877765 6999999999999 7899999999999
Q ss_pred eEEEEeCCCCeeEeeeCcC--CCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCC-EEE
Q 042434 334 GIFMCDCDGNEIKAWRGTR--IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCK-NFI 409 (517)
Q Consensus 334 ~i~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~-~l~ 409 (517)
|.+||..+.....+..+. ...|.+++|+|+++++++++.|+.|++||++... .....+...+.+++|+|+++ .++
T Consensus 143 -i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 143 -TTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp -EEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred -EEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence 888899887777666544 3579999999999999999999999999996554 55566888999999999999 899
Q ss_pred EEeCCCeEEEEEcCCCC---ccceEEeCcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCCceeEEecCCC----
Q 042434 410 VNLNSQEIHMWDVAGKW---EKPFKYTGHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNSKPIEILSGHS---- 481 (517)
Q Consensus 410 ~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---- 481 (517)
+++.|+.|++||++... .....+ +|... +.++.|+| ++.+|++++.||.|++||+++++.+..+.+|.
T Consensus 222 s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~---v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 222 TSSVDATVKLWDLRNIKDKNSYIAEM-PHEKP---VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEETTSEEEEEEGGGCCSTTCEEEEE-ECSSC---EEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEeCCCEEEEEeCCCCCcccceEEEe-cCCCc---eEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 99999999999997632 223333 45443 66677799 99999999999999999999988877776543
Q ss_pred -------------CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 482 -------------MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 482 -------------~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
+.+..++|+|++ .+ +++.||.|++||+.+++.
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg-~~--s~s~d~~i~iwd~~~~~~ 342 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDD-QL--LLNDKRTIDIYDANSGGL 342 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCT-TT--CTTCCCCEEEEETTTCCE
T ss_pred ccccceEEeccCCCCceEEEecCCc-cc--ccCCCCeEEEEecCCCce
Confidence 334456777777 34 788999999999988764
No 95
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=275.92 Aligned_cols=271 Identities=18% Similarity=0.298 Sum_probs=212.6
Q ss_pred EECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe-ccCCCCEEEEEECC-CCCeEEEEeCCCeEEEEECCC---Cc---
Q 042434 229 QFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL-RSHQNPVSFVAWSP-DDTKLLTCGNAEVLKLWDVET---GI--- 300 (517)
Q Consensus 229 ~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~---~~--- 300 (517)
.|+|++..+++++ .|+.. + ..+..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+ +.
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g---~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 103 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-G---KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS 103 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-C---CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS
T ss_pred hcCCccccccccc------ccccc-c---eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc
Confidence 3788888888765 37642 2 455667 88999999999999 999999999999999999876 43
Q ss_pred EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEe--CCCCeeEeeeC--------c---CCCceEEEE--EccCC
Q 042434 301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCD--CDGNEIKAWRG--------T---RIPKVLDLA--VTPDG 365 (517)
Q Consensus 301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~--~~~~~~~~~~~--------~---~~~~i~~~~--~~~~~ 365 (517)
....+ .|...|.+++|+|++.+|++++.||.+++|..+ ..+........ . +...+.++. +++++
T Consensus 104 ~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (437)
T 3gre_A 104 SSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK 182 (437)
T ss_dssp CSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC
T ss_pred eeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC
Confidence 23333 589999999999999999999999994444432 12333222211 1 334566666 66889
Q ss_pred CEEEEEeCCCcEEEEECCCce--EEeec--cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe-CcccCce
Q 042434 366 ENLISVLSDKDIRILNLGTYA--ERVIS--EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT-GHSQNKY 440 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~--~~~~~--~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~ 440 (517)
..+++++.||.|++||+++.+ ..... +...|.+++|+|+++++++++.||.|++||++.. .....+. .+...
T Consensus 183 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~-- 259 (437)
T 3gre_A 183 SLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VLIRSWSFGDHAP-- 259 (437)
T ss_dssp EEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EEEEEEBCTTCEE--
T ss_pred CEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cEEEEEecCCCCc--
Confidence 999999999999999999877 23333 6789999999999999999999999999999875 5555543 44433
Q ss_pred EEEee----cCCCCCcEEEEecCCCcEEEEecCCCceeEEecC--------------------------CCCCeeEEEec
Q 042434 441 VIRSC----FGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG--------------------------HSMTVNCVSWN 490 (517)
Q Consensus 441 ~i~~~----~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------------h~~~v~~v~~~ 490 (517)
+.++ .+++++.+|++|+.||.|++||+.+++++..+.+ |...|++++|+
T Consensus 260 -v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 338 (437)
T 3gre_A 260 -ITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS 338 (437)
T ss_dssp -EEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred -eEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence 4444 6678899999999999999999999998877764 44568888998
Q ss_pred CCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 491 PKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 491 ~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
++ .+|++|+.||.|++||+.+++.
T Consensus 339 -~~-~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 339 -ND-KILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp -TT-EEEEEEGGGTEEEEEETTCGGG
T ss_pred -Cc-eEEEecCCCCeEEEEECCCccc
Confidence 56 6999999999999999988764
No 96
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-32 Score=256.35 Aligned_cols=282 Identities=17% Similarity=0.155 Sum_probs=230.6
Q ss_pred hccccccCCCCCccccccCCC-cccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEE
Q 042434 183 SQIDSCQYHNSSVAISLYEDH-CCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKH 261 (517)
Q Consensus 183 ~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~ 261 (517)
..+..+.++.....++...+. ...|+.........+..|.+.|.+++|+|++++|++|+.||.|++|++..........
T Consensus 19 ~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~ 98 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY 98 (313)
T ss_dssp SCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C
T ss_pred CCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc
Confidence 344455553333334444444 5566666677788899999999999999999999999999999999997665555667
Q ss_pred EeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeC
Q 042434 262 TLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDC 340 (517)
Q Consensus 262 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~ 340 (517)
.+.+|...|.+++| +++++++++.||.|++|| .++....+..|...+.++.|+| ++..+++++.|+. +.+||
T Consensus 99 ~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--i~i~d- 171 (313)
T 3odt_A 99 TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT--IKLWQ- 171 (313)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSC--EEEEE-
T ss_pred chhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCC--EEEEe-
Confidence 78899999999999 578999999999999999 7788888889999999999998 8999999999999 77777
Q ss_pred CCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434 341 DGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIH 418 (517)
Q Consensus 341 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 418 (517)
.......+...+...+.+++|+|++. +++++.||.|++||+++++ .....+...+.+++|+|++ .+++++.||.|+
T Consensus 172 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~ 249 (313)
T 3odt_A 172 NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVR 249 (313)
T ss_dssp TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEE
T ss_pred cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEE
Confidence 44555566665667899999999998 9999999999999999877 4455688899999999999 689999999999
Q ss_pred EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec
Q 042434 419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS 478 (517)
Q Consensus 419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 478 (517)
+||+.+. .....+..+... +..+.++|+++ +++++.||.|++||+.+++.+....
T Consensus 250 iwd~~~~-~~~~~~~~~~~~---i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 250 IWSKENG-SLKQVITLPAIS---IWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp EECTTTC-CEEEEEECSSSC---EEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred EEECCCC-ceeEEEeccCce---EEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 9999887 666677777654 56666799998 5678999999999999887665443
No 97
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.7e-32 Score=263.23 Aligned_cols=244 Identities=14% Similarity=0.171 Sum_probs=208.1
Q ss_pred eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc--EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC
Q 042434 263 LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI--CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC 340 (517)
Q Consensus 263 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~ 340 (517)
+..|..+|.+++|+|++++|++++.|+.|++||+.+++ .+..+..|...|.+++|+|++++|++++.||. +.+|+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~--i~vwd~ 81 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN--AYVWTL 81 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSC--EEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCe--EEEEEC
Confidence 34589999999999999999999999999999999987 88889899999999999999999999999999 666676
Q ss_pred CCCeeE-e-eeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce------EEeeccCCCeeEEEEcCCCCEEEEEe
Q 042434 341 DGNEIK-A-WRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA------ERVISEEHPITSLSVSVDCKNFIVNL 412 (517)
Q Consensus 341 ~~~~~~-~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~ 412 (517)
...... . ....+...+.+++|+|+++++++++.|+.|++||+.... .....+...+.+++|+|+++++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 554422 2 223445689999999999999999999999999998764 12234678899999999999999999
Q ss_pred CCCeEEEEEcCC-----------------CCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE
Q 042434 413 NSQEIHMWDVAG-----------------KWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE 475 (517)
Q Consensus 413 ~d~~i~~~d~~~-----------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 475 (517)
.|+.|++||++. .......+.+|... +..+.++|++++|++++.||.|++||+.+++++.
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 238 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW---VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA 238 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC---EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe---EEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE
Confidence 999999999642 11444455555554 5666779999999999999999999999999999
Q ss_pred EecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 476 ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 476 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
.+..|...|.+++|+|++ .+++++ .||.|++|++.+
T Consensus 239 ~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 239 TLASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEET
T ss_pred EEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccC
Confidence 999999999999999999 677766 999999999876
No 98
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-33 Score=272.39 Aligned_cols=242 Identities=13% Similarity=0.142 Sum_probs=196.1
Q ss_pred eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC--cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC
Q 042434 263 LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG--ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC 340 (517)
Q Consensus 263 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~ 340 (517)
+..+.++|++++|+|++++|++|+.||.|++||+.++ +.+..+..|...|.+++|+|++++|++++.|+. |.+|+.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~--v~vwd~ 84 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRN--AYVYEK 84 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSS--EEEC--
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCe--EEEEEc
Confidence 3446789999999999999999999999999999988 777888899999999999999999999999999 777777
Q ss_pred CCCe---eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-----EEeec-cCCCeeEEEEcCCCCEEEEE
Q 042434 341 DGNE---IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-----ERVIS-EEHPITSLSVSVDCKNFIVN 411 (517)
Q Consensus 341 ~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~-~~~~i~~~~~s~~~~~l~~~ 411 (517)
.... .......+...|.+++|+|+++.+++++.|+.|++||+++.. ..... +...+.+++|+|++++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 6543 222233345689999999999999999999999999998764 33334 78899999999999999999
Q ss_pred eCCCeEEEEEcCCCC-----------------ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce-
Q 042434 412 LNSQEIHMWDVAGKW-----------------EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP- 473 (517)
Q Consensus 412 ~~d~~i~~~d~~~~~-----------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~- 473 (517)
+.|+.|++||+.... .....+ +|... +.++.|+|++++|++++.||.|++||+.+++.
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 240 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGW---VHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP 240 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSS---EEEEEECTTSSCEEEEETTTEEC-CEECSTTSC
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCce---EEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc
Confidence 999999999985321 122223 44444 66677799999999999999999999999987
Q ss_pred ---eEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 474 ---IEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 474 ---~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
+..+.+|...|.+++|+|++ .+|++++.|+.+ +|+..
T Consensus 241 ~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 241 PRALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCC
T ss_pred ceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeC
Confidence 88889999999999999999 788888877766 66654
No 99
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=263.06 Aligned_cols=284 Identities=11% Similarity=0.093 Sum_probs=221.8
Q ss_pred HhccccccCCCCCc-c-cccc----CCCcccccCCCcccEEE-eccccCcEEEEEECCC---CCEEEEeeCCCcEEEEEe
Q 042434 182 TSQIDSCQYHNSSV-A-ISLY----EDHCCGRDQIPTETVQI-LTEHKNEVWFVQFSNN---GEYLASSSSDCSAIIWKV 251 (517)
Q Consensus 182 ~~q~~~~~~~~~~~-~-~~~~----~~~~~~~~~~~~~~~~~-l~~h~~~v~~~~~s~~---~~~l~t~~~dg~i~iw~~ 251 (517)
...+..+.+++... . +... +.....|+....+.... ..+|.+.|++++|+|+ |++|++|+.||.|++||+
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 44566777877654 2 2222 33344455444444433 3379999999999998 799999999999999999
Q ss_pred cCCCeeeEEEEeccCCCCEEEEE------ECCCCCeEEEEeCCCeEEEEECCCCc-EEEEeCCCCC----ceEEEE----
Q 042434 252 LEDSKLTLKHTLRSHQNPVSFVA------WSPDDTKLLTCGNAEVLKLWDVETGI-CKHTFGDHGF----IVSSCA---- 316 (517)
Q Consensus 252 ~~~~~~~~~~~~~~h~~~v~~l~------~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~i~---- 316 (517)
.++. .....+.+|...|.+++ |+|++++|++++.||.|++||+.+++ .+..+..+.. .+.+++
T Consensus 98 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (357)
T 3i2n_A 98 EAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA 175 (357)
T ss_dssp TSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred CCCC--ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence 7664 13467789999999995 57899999999999999999999887 6777765544 889998
Q ss_pred EeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc---CCCEEEEEeCCCcEEEEECCCce--EEe--
Q 042434 317 WFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP---DGENLISVLSDKDIRILNLGTYA--ERV-- 389 (517)
Q Consensus 317 ~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~--~~~-- 389 (517)
|+|+++++++++.|+. |.+||........... +...+.+++|+| ++..+++++.||.|++||+++.. ...
T Consensus 176 ~~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 252 (357)
T 3i2n_A 176 YNQEERVVCAGYDNGD--IKLFDLRNMALRWETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS 252 (357)
T ss_dssp CC-CCCEEEEEETTSE--EEEEETTTTEEEEEEE-CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred cCCCCCEEEEEccCCe--EEEEECccCceeeecC-CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee
Confidence 7889999999999999 8899998776644443 345899999999 99999999999999999998765 112
Q ss_pred ---eccCCCeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCc------------------cceEEeCcccCceEEEeecC
Q 042434 390 ---ISEEHPITSLSVSVDCK-NFIVNLNSQEIHMWDVAGKWE------------------KPFKYTGHSQNKYVIRSCFG 447 (517)
Q Consensus 390 ---~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~~------------------~~~~~~~~~~~~~~i~~~~~ 447 (517)
..+...+.+++|+|+++ ++++++.||.|++||++.... ....+.+|... +..+.|
T Consensus 253 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---v~~~~~ 329 (357)
T 3i2n_A 253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP---ISSLDW 329 (357)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC---EEEEEE
T ss_pred eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC---eeEEEE
Confidence 26888999999999998 899999999999999975422 34445566554 666777
Q ss_pred CCCCcEEE-EecCCCcEEEEecCCCce
Q 042434 448 GLDGTFIA-SGSENSQIYIWNRRNSKP 473 (517)
Q Consensus 448 s~~~~~l~-~~~~dg~i~iwd~~~~~~ 473 (517)
+|++++|+ +++.||.|++||+.+.+.
T Consensus 330 s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 330 SPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cCCCCeEEEEecCCCcEEEEECCCccc
Confidence 99999998 899999999999987654
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=269.74 Aligned_cols=245 Identities=13% Similarity=0.222 Sum_probs=200.1
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc-----------EEEEeCCCC------------CceEEEEEeCCC-
Q 042434 266 HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI-----------CKHTFGDHG------------FIVSSCAWFPDS- 321 (517)
Q Consensus 266 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~i~~~~~~- 321 (517)
|.+.|++++|+|++++||+|+.||.|++||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 57899999999999999999999999999999877 577888998 889999999998
Q ss_pred -CeEEEeeCCCceeEEEEeCCCCee----------------------------------------EeeeCcCCCceEEEE
Q 042434 322 -KRLVCGSSDTEKGIFMCDCDGNEI----------------------------------------KAWRGTRIPKVLDLA 360 (517)
Q Consensus 322 -~~l~~~~~d~~v~i~~~~~~~~~~----------------------------------------~~~~~~~~~~i~~~~ 360 (517)
..|++++.|+. |.+|+...... ..+...+...|.+++
T Consensus 107 ~~~l~s~s~d~~--i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AAQFLLSTNDKT--IKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SSEEEEEECSSC--EEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred cceEEEeCCCCe--EEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 79999999999 55555443111 122345667899999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCce--EE--------eeccCCCeeEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCcc-
Q 042434 361 VTPDGENLISVLSDKDIRILNLGTYA--ER--------VISEEHPITSLSVSVDC-KNFIVNLNSQEIHMWDVAGKWEK- 428 (517)
Q Consensus 361 ~~~~~~~l~~~~~dg~i~i~d~~~~~--~~--------~~~~~~~i~~~~~s~~~-~~l~~~~~d~~i~~~d~~~~~~~- 428 (517)
|+|++++++++ .|+.|++||+++.. .. ...+...+.+++|+|++ ..+++++.||.|++||+++....
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99999999998 89999999998543 22 33678889999999998 99999999999999999876321
Q ss_pred --ceEEeCcccC---------ceEEEeecCCCCCcEEEEecCCCcEEEEecCC-CceeEEecCCCCC-------------
Q 042434 429 --PFKYTGHSQN---------KYVIRSCFGGLDGTFIASGSENSQIYIWNRRN-SKPIEILSGHSMT------------- 483 (517)
Q Consensus 429 --~~~~~~~~~~---------~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~------------- 483 (517)
...+.++... ...+.++.|+|+|++|++++. |.|++||+++ ++++..+.+|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 4566665531 013667777999999999999 9999999997 8899999888642
Q ss_pred --eeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 484 --VNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 484 --v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
+..++|+|++ .+|++|+.||.|++||+.+++
T Consensus 343 ~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 343 FDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp GCCCCEEECTTS-SEEEEECSTTEEEEEETTTCC
T ss_pred ccceEEEECCCC-CEEEEeccCCEEEEEEcCCCc
Confidence 2349999999 789999999999999998875
No 101
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.2e-32 Score=262.23 Aligned_cols=321 Identities=18% Similarity=0.212 Sum_probs=214.4
Q ss_pred HhccccccCCC-CCc-cccccCCC-cccccCCCcccEEEe-------------ccccCcEEEEEECC-CCCEEEEeeCCC
Q 042434 182 TSQIDSCQYHN-SSV-AISLYEDH-CCGRDQIPTETVQIL-------------TEHKNEVWFVQFSN-NGEYLASSSSDC 244 (517)
Q Consensus 182 ~~q~~~~~~~~-~~~-~~~~~~~~-~~~~~~~~~~~~~~l-------------~~h~~~v~~~~~s~-~~~~l~t~~~dg 244 (517)
...+.++.+++ ... .++...++ ...|+.........+ .+|.+.|++++|+| ++.+|++++.||
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 122 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK 122 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence 45566777776 444 33444444 445554443333332 36999999999999 788999999999
Q ss_pred cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC---CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCC
Q 042434 245 SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD---TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDS 321 (517)
Q Consensus 245 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 321 (517)
.|++||+.++. ....+. +...+.++.|+|.+ .++++++.||.|++||+.+++.+..+..|...|.+++|+|++
T Consensus 123 ~i~iwd~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 198 (408)
T 4a11_B 123 TLKVWDTNTLQ---TADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY 198 (408)
T ss_dssp EEEEEETTTTE---EEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSC
T ss_pred eEEEeeCCCCc---cceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCC
Confidence 99999997653 333333 78889999999854 599999999999999999999999999999999999999999
Q ss_pred C-eEEEeeCCCceeEEEEeCCCC--eeEeee--------------CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 042434 322 K-RLVCGSSDTEKGIFMCDCDGN--EIKAWR--------------GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGT 384 (517)
Q Consensus 322 ~-~l~~~~~d~~v~i~~~~~~~~--~~~~~~--------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 384 (517)
. .+++++.||. |.+||.... ....+. ..+...|.+++|+|+++++++++.||.|++||+.+
T Consensus 199 ~~ll~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 199 DYILATASADSR--VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp TTEEEEEETTSC--EEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CcEEEEEcCCCc--EEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 8 4889999999 778887643 222221 24456899999999999999999999999999988
Q ss_pred ceEEeec-------cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434 385 YAERVIS-------EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG 457 (517)
Q Consensus 385 ~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 457 (517)
....... ....+........+..+++++.++.|++||+.+. .....+.+|... +.++.++|++++|++|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~---v~~~~~s~~~~~l~s~ 352 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG-EQITMLKGHYKT---VDCCVFQSNFQELYSG 352 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC-CEEEEECCCSSC---EEEEEEETTTTEEEEE
T ss_pred CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC-cceeeeccCCCe---EEEEEEcCCCCEEEEE
Confidence 7622111 1112222233344567778888999999999887 677778777765 5566779999999999
Q ss_pred cCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 458 SENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 458 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
+.||.|++||+.+++++.....+. ....+.|.....+.+++.|+.+++|+...-+
T Consensus 353 ~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 407 (408)
T 4a11_B 353 SRDCNILAWVPSLYEPVPDDDETT---TKSQLNPAFEDAWSSSDEEGGTSAWSHPQFE 407 (408)
T ss_dssp ETTSCEEEEEECC---------------------------------------------
T ss_pred CCCCeEEEEeCCCCCccCCCCceE---eccccccccceeecccCccCceeecCCcccC
Confidence 999999999999998876655332 2234444443567788899999999876543
No 102
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.5e-31 Score=254.56 Aligned_cols=281 Identities=12% Similarity=0.075 Sum_probs=207.8
Q ss_pred cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCe
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEV 290 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~ 290 (517)
.+++..+.+|.+.|++++|+|||++||+|+.+| ++||+..+. ...... +...+..+++.++++.+ ++++.|++
T Consensus 9 ~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 9 RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV---AHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEV 82 (355)
T ss_dssp ----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE---EEEEEE--ECSCCCEEEECTTSSEEEEECSSTTE
T ss_pred cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc---ceeeee--ecCCeEEEEEcCCCCEEEEEECCccE
Confidence 345566788999999999999999999998775 789998643 222222 22357888999988887 56778899
Q ss_pred EEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC--eeEeeeCcCCCceEEEEEccCCCEE
Q 042434 291 LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN--EIKAWRGTRIPKVLDLAVTPDGENL 368 (517)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l 368 (517)
|++||+.+++++..+. +...|.++.|+++. ++++ .++. +++|+.... .+..+.. ....+++++ ..+
T Consensus 83 v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~--i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~l 150 (355)
T 3vu4_A 83 VHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDV--ISVFKFGNPWKRITDDIR----FGGVCEFSN--GLL 150 (355)
T ss_dssp EEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTE--EEEEESSTTCCBSSCCEE----EEEEEEEET--TEE
T ss_pred EEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCE--EEEEECCCCceeeEEecc----CCceEEEEc--cEE
Confidence 9999999999998885 66789999998764 4444 3666 888888754 3333332 344556666 566
Q ss_pred EE--EeCCCcEEEEECCCce------------------EEeeccCCCeeEEEEcCCCCEEEEEeCCCe-EEEEEcCCCCc
Q 042434 369 IS--VLSDKDIRILNLGTYA------------------ERVISEEHPITSLSVSVDCKNFIVNLNSQE-IHMWDVAGKWE 427 (517)
Q Consensus 369 ~~--~~~dg~i~i~d~~~~~------------------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~-i~~~d~~~~~~ 427 (517)
++ |+.+|.|++||+.+.. .....|...|.+++|+|+++++++++.|++ |++||++++ .
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~-~ 229 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG-V 229 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC-C
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC-c
Confidence 65 6889999999998743 445678889999999999999999999998 999999887 5
Q ss_pred cceEEe-C-cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce--eEEec---------------------CCCC
Q 042434 428 KPFKYT-G-HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP--IEILS---------------------GHSM 482 (517)
Q Consensus 428 ~~~~~~-~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~---------------------~h~~ 482 (517)
....+. + |... +.++.|+|+|++|++++.|++|++||+..+.. ...+. .+..
T Consensus 230 ~~~~~~~g~h~~~---v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (355)
T 3vu4_A 230 LVREFRRGLDRAD---VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHV 306 (355)
T ss_dssp EEEEEECTTCCSC---EEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTC
T ss_pred EEEEEEcCCCCCc---EEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCC
Confidence 666666 4 6654 66777799999999999999999999976531 11111 1122
Q ss_pred CeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 483 TVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 483 ~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
....++|++++ ..+++++.||.+++|++..++
T Consensus 307 ~~~~~a~~~d~-~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 307 RGCKIAWISES-SLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCEEEESSSS-EEEEEETTTTEEEEEEEEEET
T ss_pred CceEEEEeCCC-CEEEEEeCCCeEEEEEEEcCC
Confidence 34779999999 799999999999999986544
No 103
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.7e-32 Score=264.84 Aligned_cols=256 Identities=17% Similarity=0.253 Sum_probs=210.1
Q ss_pred ccEEEeccccCcEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCee----eEEEEeccCCCCEEEEEECCCC-CeEEEEe
Q 042434 213 ETVQILTEHKNEVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKL----TLKHTLRSHQNPVSFVAWSPDD-TKLLTCG 286 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~----~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~ 286 (517)
.....+.+|.+.|++++|+| ++++|++|+.||.|+||++.++... .....+.+|...|.+++|+|++ ++|++++
T Consensus 72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~ 151 (402)
T 2aq5_A 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG 151 (402)
T ss_dssp TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence 35667889999999999999 9999999999999999999765311 3346778999999999999998 6999999
Q ss_pred CCCeEEEEECCCCcEEEEe--CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-Eee-eCcCCCceEEEEEc
Q 042434 287 NAEVLKLWDVETGICKHTF--GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAW-RGTRIPKVLDLAVT 362 (517)
Q Consensus 287 ~dg~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~-~~~~~~~i~~~~~~ 362 (517)
.||.|++||+.+++.+..+ ..|...|.+++|+|++++|++++.|+. |.+||...... ..+ ..+....+.++.|+
T Consensus 152 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (402)
T 2aq5_A 152 CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKR--VRVIEPRKGTVVAEKDRPHEGTRPVHAVFV 229 (402)
T ss_dssp TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSE--EEEEETTTTEEEEEEECSSCSSSCCEEEEC
T ss_pred CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCc--EEEEeCCCCceeeeeccCCCCCcceEEEEc
Confidence 9999999999999999999 789999999999999999999999999 88899875444 444 34443358999999
Q ss_pred cCCCEEEEE---eCCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEE-EeCCCeEEEEEcCCCCccceEEeC
Q 042434 363 PDGENLISV---LSDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIV-NLNSQEIHMWDVAGKWEKPFKYTG 434 (517)
Q Consensus 363 ~~~~~l~~~---~~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~ 434 (517)
|++.++++| +.|+.|++||+++.. .....+...+.+++|+|+++++++ ++.|+.|++||+.+.......+..
T Consensus 230 ~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~ 309 (402)
T 2aq5_A 230 SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM 309 (402)
T ss_dssp STTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE
T ss_pred CCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc
Confidence 999999999 799999999998855 233456778999999999999975 457999999999876433444544
Q ss_pred cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce
Q 042434 435 HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP 473 (517)
Q Consensus 435 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 473 (517)
+.. ...+..+.|+|++.++++ .++.+++|++.++..
T Consensus 310 ~~~-~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 310 FSS-KESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp ECC-SSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred ccc-CCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 431 123556667999998765 466999999988753
No 104
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=5.1e-31 Score=258.59 Aligned_cols=290 Identities=12% Similarity=0.119 Sum_probs=231.1
Q ss_pred ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEE--EeccCCCCEEEEEECCCCCeEEEEeCCCe
Q 042434 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKH--TLRSHQNPVSFVAWSPDDTKLLTCGNAEV 290 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 290 (517)
+.+..+..+ ..+.+++|+|++.++++++.|+.|++||..++....... .+.+|...|.+++|+|++.++++++.|+.
T Consensus 114 ~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 445555544 445699999988888888889999999997664331111 34578899999999999999999999999
Q ss_pred EEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEE
Q 042434 291 LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLI 369 (517)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 369 (517)
|++||+.+++.+..+..|...+.+++|+|+++.+++++ .++. |+.||..+.........+ ..+.+++|+|+++.++
T Consensus 193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~ 269 (433)
T 3bws_A 193 VHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISED--ISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELY 269 (433)
T ss_dssp EEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTE--EEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEE
T ss_pred EEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCc--EEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEE
Confidence 99999999999999988999999999999999886554 7888 889998765543333332 3699999999999999
Q ss_pred EEe--------CCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCccceEEeCcccCc
Q 042434 370 SVL--------SDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNF-IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNK 439 (517)
Q Consensus 370 ~~~--------~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 439 (517)
+++ .|+.|++||+.+++ .....+...+..++|+|+++.+ ++++.++.|++||+.+. .....+. +...
T Consensus 270 ~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~~-~~~~- 346 (433)
T 3bws_A 270 IAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSIP-VFDK- 346 (433)
T ss_dssp EEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSS-
T ss_pred EEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEec-CCCC-
Confidence 888 48899999999877 4444555688999999999865 55588999999999865 4444443 2222
Q ss_pred eEEEeecCCCCCcEEEEecC---------------CCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEee-CC
Q 042434 440 YVIRSCFGGLDGTFIASGSE---------------NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS-DD 503 (517)
Q Consensus 440 ~~i~~~~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~d 503 (517)
+..+.++|+|+++++++. ||.|++||+.+++.+..+.. ...+.+++|+|++ ..|++++ .|
T Consensus 347 --~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~d 422 (433)
T 3bws_A 347 --PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDN-RYLVISDFLD 422 (433)
T ss_dssp --EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTS-CEEEEEETTT
T ss_pred --CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCC-CEEEEEECCC
Confidence 456667999998888876 57999999999999988876 4679999999999 5666665 59
Q ss_pred CcEEEeCCCC
Q 042434 504 HTIRIWGPCQ 513 (517)
Q Consensus 504 g~v~iw~~~~ 513 (517)
+.|++|+++.
T Consensus 423 ~~i~v~~~~~ 432 (433)
T 3bws_A 423 HQIRVYRRDG 432 (433)
T ss_dssp TEEEEEEETT
T ss_pred CeEEEEEecC
Confidence 9999999863
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.1e-32 Score=256.31 Aligned_cols=247 Identities=14% Similarity=0.171 Sum_probs=208.7
Q ss_pred EEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc---EEEEeCCCCCceEEEEEeCCCC-eEEEeeCCCceeEE
Q 042434 261 HTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI---CKHTFGDHGFIVSSCAWFPDSK-RLVCGSSDTEKGIF 336 (517)
Q Consensus 261 ~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~v~i~ 336 (517)
....+|.+.|.+++|+|++++|++++.||.|++|++.++. ....+..|...|.+++|+|+++ ++++|+.||. |.
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~ 82 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE--IL 82 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC--EE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCe--EE
Confidence 3446799999999999999999999999999999998887 3444558999999999999999 9999999999 88
Q ss_pred EEeC-CCCeeEeeeCc-CCCceEEEEEccCCCEEEEEeCCCcEEEEECCC---------ce-EEeeccCCCeeEEEEcCC
Q 042434 337 MCDC-DGNEIKAWRGT-RIPKVLDLAVTPDGENLISVLSDKDIRILNLGT---------YA-ERVISEEHPITSLSVSVD 404 (517)
Q Consensus 337 ~~~~-~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~-~~~~~~~~~i~~~~~s~~ 404 (517)
+|+. .+.....+... +...|.+++|+| +..+++++.|+.|++||+++ .+ .....+...+.+++|+|+
T Consensus 83 ~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 83 KVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp EECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred EEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCC
Confidence 8998 77766665551 446899999999 99999999999999999987 54 334457889999999998
Q ss_pred CCEEEEEeCCCeEEEEEcCC-CCccce-EEeCcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCC------ceeE
Q 042434 405 CKNFIVNLNSQEIHMWDVAG-KWEKPF-KYTGHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNS------KPIE 475 (517)
Q Consensus 405 ~~~l~~~~~d~~i~~~d~~~-~~~~~~-~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~------~~~~ 475 (517)
+ +++++.++.|++||++. ...... ....+... +.++.++| +++++++++.||.|++|++... +...
T Consensus 162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ---IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSC---EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred c--EEEEeCCCeEEEEECCccccccceeeecCCCCc---eeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 7 99999999999999987 422222 22333333 56677799 9999999999999999999887 8888
Q ss_pred EecCCCC---------CeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 476 ILSGHSM---------TVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 476 ~~~~h~~---------~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
.+.+|.. .|++++|+|++ .+|++++.||.|++||+.+++.
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEE
T ss_pred eeecccccccccccceeEEEEEEcCCC-CEEEEecCCceEEEEcCccHhH
Confidence 8888865 99999999999 7899999999999999987753
No 106
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.1e-32 Score=264.52 Aligned_cols=249 Identities=13% Similarity=0.206 Sum_probs=199.1
Q ss_pred EeccCCCCEEEEEECC-CCCeEEEEeCCCeEEEEECCCCcE--EEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEE
Q 042434 262 TLRSHQNPVSFVAWSP-DDTKLLTCGNAEVLKLWDVETGIC--KHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFM 337 (517)
Q Consensus 262 ~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~ 337 (517)
...+|...|++++|+| ++++||+|+.||+|+|||+.+++. ...+.+|...|++++|+| ++.+|++|+.||+ |.+
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~--v~i 191 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT--TRL 191 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC--EEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE--EEE
Confidence 3456889999999999 567999999999999999987754 445568999999999998 6889999999999 888
Q ss_pred EeCCCCeeEeeeCcCC--CceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCC-EEEEEeC
Q 042434 338 CDCDGNEIKAWRGTRI--PKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCK-NFIVNLN 413 (517)
Q Consensus 338 ~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~-~l~~~~~ 413 (517)
||..+.....+...+. ..+.+++|+|++.++++|+.||.|++||++... .....|...|.+++|+|++. .+++++.
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecC
Confidence 8988877766655442 357889999999999999999999999998765 45556888999999999886 6778899
Q ss_pred CCeEEEEEcCCCCccc--eEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCC------Cee
Q 042434 414 SQEIHMWDVAGKWEKP--FKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSM------TVN 485 (517)
Q Consensus 414 d~~i~~~d~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~------~v~ 485 (517)
|+.|++||++...... ....+|... +.++.|+|+|.+|++++.||.|++||+.++.....+..|.. .+.
T Consensus 272 d~~v~iwd~~~~~~~~~~~~~~~h~~~---v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 348 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASFLYSLPHRHP---VNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPI 348 (435)
T ss_dssp TSBCCEEETTTCCSSSCCSBCCBCSSC---EEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCC
T ss_pred cceeeEEecccccccceEEEeeecccc---ccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeE
Confidence 9999999997652221 222344443 77788899999999999999999999999988887766643 234
Q ss_pred EEEecCCCCcEEEEee------------CCCcEEEeCCCCCCC
Q 042434 486 CVSWNPKRPKMLASAS------------DDHTIRIWGPCQSSE 516 (517)
Q Consensus 486 ~v~~~~~~~~~l~s~~------------~dg~v~iw~~~~~~~ 516 (517)
...|+|++ .++++++ .++.|++||..+++.
T Consensus 349 ~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~ 390 (435)
T 4e54_B 349 KAAWHPRY-NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM 390 (435)
T ss_dssp BCEECSSS-SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred EEEEcCCC-CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence 55677776 3444443 346799999988753
No 107
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-33 Score=268.21 Aligned_cols=244 Identities=11% Similarity=0.189 Sum_probs=202.4
Q ss_pred cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC-----CEEEEEECCCCCeEEEEeCCCeEEEE
Q 042434 220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN-----PVSFVAWSPDDTKLLTCGNAEVLKLW 294 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~-----~v~~l~~s~~~~~l~s~~~dg~i~iw 294 (517)
+|...|++++|||+|++||+++.||.|++|+... ....+. |.. .|.+++|||||++||+|+.||+|++|
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF 156 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 5689999999999999999999999999999532 445566 665 49999999999999999999999999
Q ss_pred ECCCCc-------EEEEe----CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee----EeeeCcCCCceEEE
Q 042434 295 DVETGI-------CKHTF----GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI----KAWRGTRIPKVLDL 359 (517)
Q Consensus 295 d~~~~~-------~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~----~~~~~~~~~~i~~~ 359 (517)
|+.++. .+.++ .+|...|.+++|+|+| +++++.|+. +++|+..++.. ..+...+...|.++
T Consensus 157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t--VrlWd~~~~~~~~~~~tL~~~h~~~V~sv 232 (588)
T 2j04_A 157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS--VFSMTVSASSHQPVSRMIQNASRRKITDL 232 (588)
T ss_dssp ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC--EEEECCCSSSSCCCEEEEECCCSSCCCCE
T ss_pred ECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe--EEEEECCCCccccceeeecccccCcEEEE
Confidence 999885 35665 6778899999999999 888999999 88888876553 23444555689999
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCceE-Eee-ccCCCeeEEEE--cCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCc
Q 042434 360 AVTPDGENLISVLSDKDIRILNLGTYAE-RVI-SEEHPITSLSV--SVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGH 435 (517)
Q Consensus 360 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~-~~~~~i~~~~~--s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~ 435 (517)
+|+ |..+++++ ++.|++||+.+... ... .|...+..++| +|++..+++++.+|+ ++|....
T Consensus 233 aFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~----------- 297 (588)
T 2j04_A 233 KIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE----------- 297 (588)
T ss_dssp EEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS-----------
T ss_pred EEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc-----------
Confidence 999 68888887 69999999998873 444 78889999999 999999999999999 9999751
Q ss_pred ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC
Q 042434 436 SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD 502 (517)
Q Consensus 436 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~ 502 (517)
+. ++||+..+++. |+++++|+...+ .+..+.+ ...|.+++|+|+| .++|+++.
T Consensus 298 ------~~---~spd~~l~a~~--d~~v~lW~~~g~-~l~~~~~-~~~I~~va~SPdG-~~lA~~~~ 350 (588)
T 2j04_A 298 ------LH---VTADNIIAPYL--EKKFKKWSTIWN-EFNNYET-TLVIHGISLSPDG-YSIAIVYD 350 (588)
T ss_dssp ------EE---EECCCSSHHHH--HHHHHHTTTTTT-SSSSSCC-EEEEEEEEECTTS-SEEEEEEE
T ss_pred ------EE---ECCCceEEEEc--CCEEEEEECCCC-ceeeecc-ceEEEEEEECCCC-CEEEEEEe
Confidence 22 37888877765 999999997544 3545554 6779999999999 78888874
No 108
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.6e-30 Score=249.93 Aligned_cols=267 Identities=16% Similarity=0.157 Sum_probs=215.0
Q ss_pred CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCeEEEEECCCCcEEEEeCCCCCceE
Q 042434 235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWDVETGICKHTFGDHGFIVS 313 (517)
Q Consensus 235 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 313 (517)
.++++++.|+.|++||+.++ +....+..| ..+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~---~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~ 77 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN---KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQ 77 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT---EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEE
T ss_pred EEEEEcCCCCEEEEEECCCC---eEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Ccc
Confidence 46788899999999999765 444556655 458999999999987 677789999999999999988886554 899
Q ss_pred EEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEE-EEEeCCCcEEEEECCCce-EEee
Q 042434 314 SCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENL-ISVLSDKDIRILNLGTYA-ERVI 390 (517)
Q Consensus 314 ~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~-~~~~ 390 (517)
+++|+|+++++++++ .++. |++||..+.........+ ..+.+++|+|+++.+ ++++.++.|++||+.+++ ....
T Consensus 78 ~~~~spdg~~l~~~~~~~~~--v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASST--LSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EEEECTTSSEEEEEETTTTE--EEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ceEECCCCCEEEEEECCCCE--EEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 999999999886555 5688 889999876554433333 368999999999977 677789999999999887 4444
Q ss_pred ccCCCeeEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec---CCCcEEEE
Q 042434 391 SEEHPITSLSVSVDCKNF-IVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS---ENSQIYIW 466 (517)
Q Consensus 391 ~~~~~i~~~~~s~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iw 466 (517)
.....+..++|+|+++.+ ++++.++.|++||+++. .....+..+. .+..+.++|+|+++++++ .++.|++|
T Consensus 155 ~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~----~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 155 SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVKVEA----APSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECSS----EEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred ecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEecCC----CccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 556678999999999988 56677899999999876 4444443322 355566799999999888 68999999
Q ss_pred ecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 467 NRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 467 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
|+.+++.+..+..|. .+.+++|+|++..++++++.|+.|++||+.+++
T Consensus 230 d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 230 DTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp ETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 999999999888765 578999999995455788899999999998765
No 109
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-32 Score=255.37 Aligned_cols=266 Identities=10% Similarity=0.016 Sum_probs=204.1
Q ss_pred EECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC---------CC
Q 042434 229 QFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE---------TG 299 (517)
Q Consensus 229 ~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~---------~~ 299 (517)
.+.+++.+|++|+.||+|++||+.++....... ...|.++.|+|+ +++++.|++|++|+.. ++
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence 455688899999999999999998775443322 456788889988 9999999999999665 55
Q ss_pred cEEEEeC-CCCCceEEEEEeC--CCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccCCCEEEEEeCCC
Q 042434 300 ICKHTFG-DHGFIVSSCAWFP--DSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPDGENLISVLSDK 375 (517)
Q Consensus 300 ~~~~~~~-~~~~~v~~i~~~~--~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 375 (517)
+.+..+. .|...|.+++|+| +++++++++.||. +.+||....... .....+...+.+++|+|++.++++|+.||
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~--i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg 192 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGT--IGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG 192 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCC--EEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCc--EEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence 5455443 6778899999999 9999999999999 888888765443 33345555799999999999999999999
Q ss_pred cEEEEECCCce-E--Eeec-cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEE--EeecCCC
Q 042434 376 DIRILNLGTYA-E--RVIS-EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI--RSCFGGL 449 (517)
Q Consensus 376 ~i~i~d~~~~~-~--~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i--~~~~~s~ 449 (517)
.|++||++++. . .... |..+|.+++|+|++.++++++ ++.|++||++.. .....+..+......+ .++.|+|
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (343)
T 3lrv_A 193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD-VGTLAYPTYTIPEFKTGTVTYDIDD 270 (343)
T ss_dssp CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS-TTCBSSCCCBC-----CCEEEEECT
T ss_pred EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC-CcceeecccccccccccceEEEECC
Confidence 99999999877 2 3444 788999999999999999999 559999999876 3333333211111122 2466799
Q ss_pred CCcEEEEecC-CCcEEEEecCCCceeEEecCCCCCeeEEEecC---CCCcEEEEeeCCCcEEEeCC
Q 042434 450 DGTFIASGSE-NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP---KRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 450 ~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~---~~~~~l~s~~~dg~v~iw~~ 511 (517)
+|++|++++. |+.|++|++.+....... .++..++|.| +. ..+++++.||.+.++-.
T Consensus 271 ~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADF-TDMDVVCGDGGIAAILK 331 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCC-CEEEEEEETTEEEEEEE
T ss_pred CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCcccccc-ceeEEEecCCceEEEEe
Confidence 9999999988 999999999766543333 5677888888 66 67888888998887743
No 110
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.9e-31 Score=254.60 Aligned_cols=246 Identities=14% Similarity=0.085 Sum_probs=192.7
Q ss_pred EEeccccCcEEEEEECCCCCEEEEe-----------eCCCcEEEEEecCCCe-eeEEEEe-----ccCCCCEEEEEECCC
Q 042434 216 QILTEHKNEVWFVQFSNNGEYLASS-----------SSDCSAIIWKVLEDSK-LTLKHTL-----RSHQNPVSFVAWSPD 278 (517)
Q Consensus 216 ~~l~~h~~~v~~~~~s~~~~~l~t~-----------~~dg~i~iw~~~~~~~-~~~~~~~-----~~h~~~v~~l~~s~~ 278 (517)
..+.+|.+.|.+++++ ++.+++| +.|+.+++|++..... ....... ..+...+.+++|+||
T Consensus 67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 3577899999988775 4456554 4578899999875432 2222222 234556999999999
Q ss_pred CCeEEEE--eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC-CCCeeE-eeeCcCCC
Q 042434 279 DTKLLTC--GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC-DGNEIK-AWRGTRIP 354 (517)
Q Consensus 279 ~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~-~~~~~~-~~~~~~~~ 354 (517)
|++++++ +.|++|+|||+.+++++..+ .|...|.+++|+|||+++++++.++ +..|+. .+.... .....+..
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~~---~~~~~~~~~~~~~~~~~~~~~~ 220 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTEKFEI-ETRGEVKDLHFSTDGKVVAYITGSS---LEVISTVTGSCIARKTDFDKNW 220 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSSEEEEECSSC---EEEEETTTCCEEEEECCCCTTE
T ss_pred CCEEEEEECCCCCEEEEeECCCCcEEEEe-CCCCceEEEEEccCCceEEecccee---EEEEEeccCcceeeeecCCCCC
Confidence 9998754 47899999999999999888 4778899999999999999998776 444444 444443 33444556
Q ss_pred ceEEEEEccCCCEEEEEeCCC----cEEEEECCCce------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434 355 KVLDLAVTPDGENLISVLSDK----DIRILNLGTYA------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG 424 (517)
Q Consensus 355 ~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 424 (517)
.+.+++|+|+++.+++++.++ .+++||+.... .....+...|++++|+|+|++|++|+.|+.|++||+.+
T Consensus 221 ~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~ 300 (365)
T 4h5i_A 221 SLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD 300 (365)
T ss_dssp EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred CEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC
Confidence 899999999999999999887 68889887654 23446778899999999999999999999999999988
Q ss_pred CCccceE-EeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434 425 KWEKPFK-YTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS 471 (517)
Q Consensus 425 ~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 471 (517)
+ ..... ..+|... +.++.|+|||++|++|+.|++|+|||+...
T Consensus 301 ~-~~~~~~~~gH~~~---V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 301 L-SMSKIFKQAHSFA---ITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp T-EEEEEETTSSSSC---EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred C-cEEEEecCcccCC---EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 7 55554 4678766 667778999999999999999999998643
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.1e-29 Score=242.39 Aligned_cols=300 Identities=15% Similarity=0.141 Sum_probs=229.5
Q ss_pred CCcccccCCCcccEEEeccccCcEEEEEECCCCCEE-EEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCC
Q 042434 202 DHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYL-ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT 280 (517)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 280 (517)
+....|+....+.+..+.+|.. +.+++|+|+|+++ ++++.|+.|++||..++ +....+..+. .+.+++|+|+++
T Consensus 12 ~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---~~~~~~~~~~-~v~~~~~spdg~ 86 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATN---NVIATVPAGS-SPQGVAVSPDGK 86 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTT---EEEEEEECSS-SEEEEEECTTSS
T ss_pred CEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCC---eEEEEEECCC-CccceEECCCCC
Confidence 3444566566777788877754 8999999999977 67778999999999765 3445555444 899999999999
Q ss_pred eEEEE-eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeE-EEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEE
Q 042434 281 KLLTC-GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRL-VCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLD 358 (517)
Q Consensus 281 ~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~ 358 (517)
+|+++ +.++.|++||+.+++.+..+.. ...+.+++|+|+++.+ ++++.++. |++||..+.........+ ..+.+
T Consensus 87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~--v~~~d~~~~~~~~~~~~~-~~~~~ 162 (391)
T 1l0q_A 87 QVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKT--VSVINTVTKAVINTVSVG-RSPKG 162 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTE--EEEEETTTTEEEEEEECC-SSEEE
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCE--EEEEECCCCcEEEEEecC-CCcce
Confidence 88654 5679999999999998888754 4568999999999977 67777888 889998765543333323 36799
Q ss_pred EEEccCCCEE-EEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEe---CCCeEEEEEcCCCCccceEEe
Q 042434 359 LAVTPDGENL-ISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNL---NSQEIHMWDVAGKWEKPFKYT 433 (517)
Q Consensus 359 ~~~~~~~~~l-~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~ 433 (517)
++|+|+++.+ ++++.++.|++||+++.. .....+...+.+++|+|+++++++++ .++.|++||+.+. .....+.
T Consensus 163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~-~~~~~~~ 241 (391)
T 1l0q_A 163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIP 241 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC-eEEEEEe
Confidence 9999999987 567788999999999887 44555667889999999999999888 6899999999876 5555555
Q ss_pred CcccCceEEEeecCCCCCcEE-EEecCCCcEEEEecCCCceeEEecCCCCCee---EEEecCCC----------------
Q 042434 434 GHSQNKYVIRSCFGGLDGTFI-ASGSENSQIYIWNRRNSKPIEILSGHSMTVN---CVSWNPKR---------------- 493 (517)
Q Consensus 434 ~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~---~v~~~~~~---------------- 493 (517)
.+.. +..+.++|+|+++ ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|++
T Consensus 242 ~~~~----~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~ 317 (391)
T 1l0q_A 242 VGPD----PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGY 317 (391)
T ss_dssp CCSS----EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSE
T ss_pred cCCC----ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccccccccccc
Confidence 5433 3455669999877 6778899999999999999988876654421 12222211
Q ss_pred -----CcEEEEeeCCCcEEEeCCCCCC
Q 042434 494 -----PKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 494 -----~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
+..+...+.|..+++|++..+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~W~~~~g~ 344 (391)
T 1l0q_A 318 IFLSEPVQFTDLSKDATEWKWDFGDGS 344 (391)
T ss_dssp EETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred ccccceEEEEeCCCCceEEEEECCCCc
Confidence 1346677789999999997664
No 112
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.9e-31 Score=257.49 Aligned_cols=263 Identities=12% Similarity=0.100 Sum_probs=170.9
Q ss_pred eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCee--eEEEEeccCCCCEEEEEECC--------CCCeEEEEeC
Q 042434 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKL--TLKHTLRSHQNPVSFVAWSP--------DDTKLLTCGN 287 (517)
Q Consensus 218 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~~h~~~v~~l~~s~--------~~~~l~s~~~ 287 (517)
...|...+....+++++.+||+|+.|++|+|||...+... .....+.+|.+.|.+++|+| |+++||+|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 3445555555666677889999999999999999866432 23345789999999999998 7899999999
Q ss_pred CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC-eEEEeeCCCceeEEEEeCCCCeeEeee-----------------
Q 042434 288 AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK-RLVCGSSDTEKGIFMCDCDGNEIKAWR----------------- 349 (517)
Q Consensus 288 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~----------------- 349 (517)
|++|+|||+.++.+...+..|...|.+++|+|++. +|++++.|+. |.+||..........
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~--v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~ 242 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGN--IRIFDWTLNLSAEENSQTELVKNPWLLTLNTL 242 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSE--EEEEETTCCC----------CSCCCSEEEESG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCE--EEEEECCCCcccccccccCCcccceEEecccc
Confidence 99999999999888888888999999999999874 7999999999 777787643321111
Q ss_pred --------CcCCCceEEEEEc-cCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434 350 --------GTRIPKVLDLAVT-PDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIH 418 (517)
Q Consensus 350 --------~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 418 (517)
..+...+.++.|+ ++++.+++++.|+.+++||+.... .....+...+..+.+.|+.+.+
T Consensus 243 ~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------- 312 (393)
T 4gq1_A 243 PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI---------- 312 (393)
T ss_dssp GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEE----------
T ss_pred cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccc----------
Confidence 1122234445543 455555555555555555554433 1111222222222222221110
Q ss_pred EEEcCCCCccceEEeCcccCceEEEeecCC-CCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEE
Q 042434 419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGG-LDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKML 497 (517)
Q Consensus 419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l 497 (517)
..+ ...+..++++ .++.++++|+.||.|++||+.+++++..+.+|..+|++++|+|+| ++|
T Consensus 313 --------------~~~---~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG-~~L 374 (393)
T 4gq1_A 313 --------------SLF---PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDG-SHL 374 (393)
T ss_dssp --------------CSS---CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTS-SEE
T ss_pred --------------ccc---CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCC-CEE
Confidence 000 0111222222 356678889999999999999999998888999999999999999 799
Q ss_pred EEeeCCCcEEEeCC
Q 042434 498 ASASDDHTIRIWGP 511 (517)
Q Consensus 498 ~s~~~dg~v~iw~~ 511 (517)
|++++|| +.+|++
T Consensus 375 A~as~~G-v~lvrL 387 (393)
T 4gq1_A 375 AIATEGS-VLLTRL 387 (393)
T ss_dssp EEEESSE-EEEEEE
T ss_pred EEEeCCC-eEEEEE
Confidence 9999877 445544
No 113
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.9e-30 Score=254.42 Aligned_cols=274 Identities=20% Similarity=0.265 Sum_probs=208.8
Q ss_pred cccccCCCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE
Q 042434 196 AISLYEDHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW 275 (517)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~ 275 (517)
..+..++....|+....+....+.+|.+.|++++| ++++|++|+.||.|++||+.++ .....+.+|...|.+++|
T Consensus 147 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~l~~ 221 (435)
T 1p22_A 147 VSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG---EMLNTLIHHCEAVLHLRF 221 (435)
T ss_dssp EEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC---CEEEEECCCCSCEEEEEC
T ss_pred EEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC---cEEEEEcCCCCcEEEEEE
Confidence 44455556667777788899999999999999999 7889999999999999999766 456778899999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEECCCCcEE---EEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcC
Q 042434 276 SPDDTKLLTCGNAEVLKLWDVETGICK---HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTR 352 (517)
Q Consensus 276 s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~ 352 (517)
++ ..+++|+.||.|++||+.++... ..+.+|...|.+++| +++++++|+.||. |.+||............+
T Consensus 222 ~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~--i~vwd~~~~~~~~~~~~~ 295 (435)
T 1p22_A 222 NN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT--IKVWNTSTCEFVRTLNGH 295 (435)
T ss_dssp CT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSE--EEEEETTTCCEEEEEECC
T ss_pred cC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCe--EEEEECCcCcEEEEEcCC
Confidence 74 59999999999999999888655 677799999999999 6889999999999 888898765444333345
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc---
Q 042434 353 IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE--- 427 (517)
Q Consensus 353 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~--- 427 (517)
...+.++.+ +++.+++|+.||.|++||++++. .....+...+.++++ ++.++++++.||.|++||+.+...
T Consensus 296 ~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~ 371 (435)
T 1p22_A 296 KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA 371 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc
Confidence 568988888 46899999999999999999877 445567788999988 788999999999999999965421
Q ss_pred -----cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEec
Q 042434 428 -----KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWN 490 (517)
Q Consensus 428 -----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~ 490 (517)
....+.+|...... +.+ ++.+|++|+.||.|++||+.+........ ...+..++.|.
T Consensus 372 ~~~~~~~~~~~~h~~~v~~---l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 433 (435)
T 1p22_A 372 PAGTLCLRTLVEHSGRVFR---LQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI 433 (435)
T ss_dssp CTTTTEEEEECCCSSCCCC---EEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred cccchheeeccCCCCCeEE---EEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence 45566777765433 333 78899999999999999998876554433 23445555554
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.98 E-value=2.9e-30 Score=234.28 Aligned_cols=256 Identities=15% Similarity=0.104 Sum_probs=173.3
Q ss_pred cEEEEEECCCCC---EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC----------------------
Q 042434 224 EVWFVQFSNNGE---YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD---------------------- 278 (517)
Q Consensus 224 ~v~~~~~s~~~~---~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~---------------------- 278 (517)
.+.++-|-..|- .+++++. ..|++|+..++.+++..+++.+|..+|..+.+.||
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 355566655443 5677765 68999999988778889999999887776666664
Q ss_pred -------CCeEEEEeCCCeEEEEECCCCcEEEE-eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC
Q 042434 279 -------DTKLLTCGNAEVLKLWDVETGICKHT-FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG 350 (517)
Q Consensus 279 -------~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~ 350 (517)
+..+++++. .+.+|++.+++.+.. ..+|...|..++++|+|+.+. ....
T Consensus 120 spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~---------------------s~~~ 176 (356)
T 2w18_A 120 SSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKE---------------------NQFL 176 (356)
T ss_dssp ------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEE---------------------EEEE
T ss_pred CCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceee---------------------eecc
Confidence 334444332 244444444444443 234444444444444444333 2222
Q ss_pred cCCCceEEEEEcc---CCCEEEEEeCCCcEEEEECCCce-EEee-ccC---CCeeEEEEcCCCCEE------------EE
Q 042434 351 TRIPKVLDLAVTP---DGENLISVLSDKDIRILNLGTYA-ERVI-SEE---HPITSLSVSVDCKNF------------IV 410 (517)
Q Consensus 351 ~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~-~~~~-~~~---~~i~~~~~s~~~~~l------------~~ 410 (517)
+...+..++|++ ++..+++++.|++|++||+.+++ ...+ .+. ..+.+++|+|+|..+ ++
T Consensus 177 -~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS 255 (356)
T 2w18_A 177 -MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESL 255 (356)
T ss_dssp -CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----------
T ss_pred -CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeec
Confidence 224677888888 78999999999999999999988 2333 222 356778999999887 45
Q ss_pred EeCCCeEEEEEcCCCCccceEE-----eCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCee
Q 042434 411 NLNSQEIHMWDVAGKWEKPFKY-----TGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVN 485 (517)
Q Consensus 411 ~~~d~~i~~~d~~~~~~~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 485 (517)
|+.|++|++||..++ .....+ .+|... .+.. +.++.++++|+.||+|+|||+.+++++.++.+|...+.
T Consensus 256 Gs~D~tIklWd~~tg-k~l~v~~~~~p~Gh~~~--~lsg---~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vv 329 (356)
T 2w18_A 256 RSPVFQLIVINPKTT-LSVGVMLYCLPPGQAGR--FLEG---DVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHW 329 (356)
T ss_dssp --CCEEEEEEETTTT-EEEEEEEECCCTTCCCC--EEEE---EEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCC
T ss_pred cCCCcEEEEEECCCC-EEEEEEEeeccCCCcce--eEcc---ccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeE
Confidence 678899999999876 333322 233322 1211 23467899999999999999999999999999987665
Q ss_pred -EEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 486 -CVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 486 -~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
.++|+|+| .+|+||+.|++|+|||+
T Consensus 330 s~vafSPDG-~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 330 SFVKWSGTD-SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CEEEECSSS-SEEEEECTTSCEEEEEE
T ss_pred EEEEECCCC-CEEEEEECCCcEEEecC
Confidence 58999999 79999999999999986
No 115
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=1.1e-29 Score=237.98 Aligned_cols=262 Identities=20% Similarity=0.279 Sum_probs=216.8
Q ss_pred cCCCcccccCCCcccEEEec--cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC
Q 042434 200 YEDHCCGRDQIPTETVQILT--EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP 277 (517)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~--~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 277 (517)
.+.....|+...+++++.+. +|...|++++|+|++++||+|+.||+|++|++.++ +....+.+|...+.++.+
T Consensus 43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~---~~~~~~~~h~~~~~~~~~-- 117 (318)
T 4ggc_A 43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KRLRNMTSHSARVGSLSW-- 117 (318)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEE--
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc---eeEEEecCccceEEEeec--
Confidence 35556667767777777664 68889999999999999999999999999999766 556778899998887665
Q ss_pred CCCeEEEEeCCCeEEEEECCCC-cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe----eEeeeCcC
Q 042434 278 DDTKLLTCGNAEVLKLWDVETG-ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE----IKAWRGTR 352 (517)
Q Consensus 278 ~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~----~~~~~~~~ 352 (517)
++..+++++.++.+++|+..++ ..+..+.+|...+.++.++++++++++++.|+. |.+||..... .......+
T Consensus 118 ~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~ 195 (318)
T 4ggc_A 118 NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL--VNVWPSAPGEGGWVPLQTFTQH 195 (318)
T ss_dssp ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC--EEEEESSCBTTBSCCSEEECCC
T ss_pred CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcc--eeEEECCCCcccccceeeeccc
Confidence 5679999999999999998876 456677899999999999999999999999999 7778876422 12223344
Q ss_pred CCceEEEEEccCCCEE---EEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEe--CCCeEEEEEcCCCC
Q 042434 353 IPKVLDLAVTPDGENL---ISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNL--NSQEIHMWDVAGKW 426 (517)
Q Consensus 353 ~~~i~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~--~d~~i~~~d~~~~~ 426 (517)
.+.|.++.++|++..+ ++++.++.|++||..... .....+...+..+.++|++..+++++ .|+.|++||++++
T Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~- 274 (318)
T 4ggc_A 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM- 274 (318)
T ss_dssp CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-
T ss_pred CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC-
Confidence 4579999999987633 456778999999998877 56667788899999999999988765 6899999999887
Q ss_pred ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc
Q 042434 427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK 472 (517)
Q Consensus 427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 472 (517)
..+..+.+|... +.++.|+|+|++|++|+.||+|++||+....
T Consensus 275 ~~~~~l~gH~~~---V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 275 AKVAELKGHTSR---VLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp CEEEEECCCSSC---EEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred cEEEEEcCCCCC---EEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 777888888876 6666779999999999999999999997654
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.98 E-value=1.4e-30 Score=254.75 Aligned_cols=251 Identities=20% Similarity=0.315 Sum_probs=205.8
Q ss_pred EEEeccccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCC-------CeeeEEEEeccCCCCEEEEEECCCCC-eEEEE
Q 042434 215 VQILTEHKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLED-------SKLTLKHTLRSHQNPVSFVAWSPDDT-KLLTC 285 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~-------~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~ 285 (517)
.....+|.+.|++++|+|+ +.+||+|+.||.|++|++... ........+.+|...|.+++|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 3556789999999999997 789999999999999999751 12345567889999999999999988 99999
Q ss_pred eCCCeEEEEECCCCcE-------EEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCC----eeEeeeCcCC
Q 042434 286 GNAEVLKLWDVETGIC-------KHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGN----EIKAWRGTRI 353 (517)
Q Consensus 286 ~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~----~~~~~~~~~~ 353 (517)
+.||.|++||+.++.. ...+..|...|.+++|+| ++..|++++.||. |.+||.+.. .+..+. .+.
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~--i~i~d~~~~~~~~~~~~~~-~~~ 277 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK--LMIWDTRNNNTSKPSHTVD-AHT 277 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE--EEEEETTCSCSSSCSEEEE-CCS
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe--EEEEECCCCCCCcceeEee-cCC
Confidence 9999999999987422 356678999999999999 6789999999999 888888753 334444 444
Q ss_pred CceEEEEEccCCC-EEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCC-EEEEEeCCCeEEEEEcCCCC--
Q 042434 354 PKVLDLAVTPDGE-NLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCK-NFIVNLNSQEIHMWDVAGKW-- 426 (517)
Q Consensus 354 ~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~~~d~~~~~-- 426 (517)
..|.+++|+|++. .+++|+.||.|++||+++.. .....+...+.+++|+|+++ .+++++.|+.|++||+....
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 6899999999987 68899999999999998743 45556888999999999985 68899999999999997621
Q ss_pred -----------ccceEEeCcccCceEEEeecCCCCCc-EEEEecCCCcEEEEecCCC
Q 042434 427 -----------EKPFKYTGHSQNKYVIRSCFGGLDGT-FIASGSENSQIYIWNRRNS 471 (517)
Q Consensus 427 -----------~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 471 (517)
.....+.+|... +..+.|+|++. ++++++.||.|++|++...
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h~~~---v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGHTAK---ISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCCSSC---EEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cCccccccCCcceEEEcCCCCCC---ceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 233344455544 66667799999 9999999999999998754
No 117
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=6.9e-30 Score=244.51 Aligned_cols=253 Identities=15% Similarity=0.171 Sum_probs=201.4
Q ss_pred eEEEEeccCCCCEEEEEECCC---CCeEEEEeCCCeEEEEECCC-CcEE-EEeCCCCCceEEEEEeCCCCeEEEeeCCCc
Q 042434 258 TLKHTLRSHQNPVSFVAWSPD---DTKLLTCGNAEVLKLWDVET-GICK-HTFGDHGFIVSSCAWFPDSKRLVCGSSDTE 332 (517)
Q Consensus 258 ~~~~~~~~h~~~v~~l~~s~~---~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~ 332 (517)
.....+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+..|...|.+++|+|++++|++++.||.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 455678899999999999999 59999999999999999987 5554 677889999999999999999999999999
Q ss_pred eeEEEEeCCCCeeEeeeCcCCCceEEEEE--ccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEE
Q 042434 333 KGIFMCDCDGNEIKAWRGTRIPKVLDLAV--TPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFI 409 (517)
Q Consensus 333 v~i~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~ 409 (517)
|.+|+..+........ +...|.+++| +|++.++++++.||.|++||+++.+ .........+.++.+. +..++
T Consensus 110 --v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 184 (368)
T 3mmy_A 110 --AKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--YPMAV 184 (368)
T ss_dssp --EEEEETTTTEEEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--TTEEE
T ss_pred --EEEEEcCCCCceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEec--CCeeE
Confidence 8888988777665544 4468999999 8999999999999999999998877 3344444556666555 45889
Q ss_pred EEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC--CCcEEEEecCCCcEEEEecCCC---ceeEEecCCCC--
Q 042434 410 VNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL--DGTFIASGSENSQIYIWNRRNS---KPIEILSGHSM-- 482 (517)
Q Consensus 410 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~~-- 482 (517)
+++.++.+.+|+++.....................+.... ....+++++.||.|++||+... ..+..+.+|..
T Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 264 (368)
T 3mmy_A 185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG 264 (368)
T ss_dssp EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence 9999999999999876333333322222111122222122 1234999999999999999987 66778888876
Q ss_pred ----------CeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 483 ----------TVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 483 ----------~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
.|++++|+|++ .+|++++.||.|++||+.+++.
T Consensus 265 ~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~~ 307 (368)
T 3mmy_A 265 TNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDARTK 307 (368)
T ss_dssp ---CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTEE
T ss_pred ccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCCCcE
Confidence 79999999999 7999999999999999988753
No 118
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=6.5e-30 Score=237.09 Aligned_cols=241 Identities=19% Similarity=0.258 Sum_probs=186.7
Q ss_pred hccccccCCCCCc-cccccCCCcc-cccCC--CcccEEEeccccCcEEEEEECCC--CCEEEEeeCCCcEEEEEecCCCe
Q 042434 183 SQIDSCQYHNSSV-AISLYEDHCC-GRDQI--PTETVQILTEHKNEVWFVQFSNN--GEYLASSSSDCSAIIWKVLEDSK 256 (517)
Q Consensus 183 ~q~~~~~~~~~~~-~~~~~~~~~~-~~~~~--~~~~~~~l~~h~~~v~~~~~s~~--~~~l~t~~~dg~i~iw~~~~~~~ 256 (517)
..+..+.|++... .++...|... .|+.. ..+++..+.+|.++|++++|+|+ +++||+|+.||+|++||+.++.
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~- 88 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR- 88 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC-
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc-
Confidence 3455566666554 4444445544 44432 23678899999999999999874 8999999999999999997553
Q ss_pred eeEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCeEEEEECCCCc--EEEEeCCCCCceEEEEEeCC------------
Q 042434 257 LTLKHTLRSHQNPVSFVAWSPD--DTKLLTCGNAEVLKLWDVETGI--CKHTFGDHGFIVSSCAWFPD------------ 320 (517)
Q Consensus 257 ~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~------------ 320 (517)
......+.+|...|.+++|+|+ +.+|++++.||+|++||+.++. ....+..|...|.+++|+|+
T Consensus 89 ~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~ 168 (297)
T 2pm7_B 89 WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 168 (297)
T ss_dssp BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----------
T ss_pred eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCC
Confidence 2234567889999999999997 8899999999999999998763 23566789999999999997
Q ss_pred -CCeEEEeeCCCceeEEEEeCCCCe--eEeeeCcCCCceEEEEEccCC---CEEEEEeCCCcEEEEECCCce----EEe-
Q 042434 321 -SKRLVCGSSDTEKGIFMCDCDGNE--IKAWRGTRIPKVLDLAVTPDG---ENLISVLSDKDIRILNLGTYA----ERV- 389 (517)
Q Consensus 321 -~~~l~~~~~d~~v~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~----~~~- 389 (517)
+++|++|+.|+.+++|..+..... .......|...|.+++|+|++ .++++++.|++|++||+++.. ...
T Consensus 169 ~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~ 248 (297)
T 2pm7_B 169 ESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLL 248 (297)
T ss_dssp -CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEES
T ss_pred CcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeee
Confidence 579999999999444444332221 222233455689999999985 799999999999999997642 112
Q ss_pred --eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434 390 --ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG 424 (517)
Q Consensus 390 --~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 424 (517)
..+...+.+++|+|++++|++++.|+.|++|+...
T Consensus 249 ~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 249 KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred ecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 24567899999999999999999999999999753
No 119
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3.8e-29 Score=237.32 Aligned_cols=290 Identities=15% Similarity=0.193 Sum_probs=199.4
Q ss_pred HhccccccCCCCCc-cccccCCC-cccccCCCc----ccEEEeccccCcEEEEEECC--CCCEEEEeeCCCcEEEEEecC
Q 042434 182 TSQIDSCQYHNSSV-AISLYEDH-CCGRDQIPT----ETVQILTEHKNEVWFVQFSN--NGEYLASSSSDCSAIIWKVLE 253 (517)
Q Consensus 182 ~~q~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~----~~~~~l~~h~~~v~~~~~s~--~~~~l~t~~~dg~i~iw~~~~ 253 (517)
...+.++.+++... .++...|. ...|+.... .....+.+|.+.|++++|+| ++++|++|+.||.|++||+..
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~ 90 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence 44566777776655 44444444 444543333 46778889999999999999 699999999999999999976
Q ss_pred CC------eeeEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCeEEEEECCCCcEEEEeC-------------CCCCce
Q 042434 254 DS------KLTLKHTLRSHQNPVSFVAWSPD--DTKLLTCGNAEVLKLWDVETGICKHTFG-------------DHGFIV 312 (517)
Q Consensus 254 ~~------~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v 312 (517)
+. .......+..|...|.+++|+|+ +.++++++.||.|++||+.+++.+..+. .|...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (351)
T 3f3f_A 91 DQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSD 170 (351)
T ss_dssp TSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCC
T ss_pred CcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccce
Confidence 43 22556778899999999999999 9999999999999999998876543322 577899
Q ss_pred EEEEEeCC---CCeEEEeeCCCceeEEEEeCCCCee--EeeeCcCCCceEEEEEccCC----CEEEEEeCCCcEEEEECC
Q 042434 313 SSCAWFPD---SKRLVCGSSDTEKGIFMCDCDGNEI--KAWRGTRIPKVLDLAVTPDG----ENLISVLSDKDIRILNLG 383 (517)
Q Consensus 313 ~~i~~~~~---~~~l~~~~~d~~v~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d~~ 383 (517)
.+++|+|+ +..+++++.++. +..|+...... ......+...|.+++|+|++ +++++++.||.|++||++
T Consensus 171 ~~~~~~p~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 171 FCLSWCPSRFSPEKLAVSALEQA--IIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp EEEEECCCSSSCCEEEEEETTEE--EEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred eEEEeccCCCCCcEEEEecCCCc--EEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence 99999997 999999999998 55555554432 22233455689999999998 899999999999999998
Q ss_pred CceEEee--ccCCCeeEEEEcCCCCEEEEEeC----CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434 384 TYAERVI--SEEHPITSLSVSVDCKNFIVNLN----SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG 457 (517)
Q Consensus 384 ~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 457 (517)
....... ...........++.......+.. ...+.+|+.... .....+.+|... +..+.|+|++++|++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~---v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 249 EKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV-ELLSEHDDHNGE---VWSVSWNLTGTILSSA 324 (351)
T ss_dssp ECC---------------------------------------CCSEEE-EEEEEECTTSSC---EEEEEECSSSCCEEEE
T ss_pred CCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccc-cEEEEEeccccc---EEEEEEcCCCCEEEEe
Confidence 7652221 12222233333333333333322 233444443332 445556666665 6667779999999999
Q ss_pred cCCCcEEEEecCCCceeEEe
Q 042434 458 SENSQIYIWNRRNSKPIEIL 477 (517)
Q Consensus 458 ~~dg~i~iwd~~~~~~~~~~ 477 (517)
+.||.|++||+.+++.+..+
T Consensus 325 ~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 325 GDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ETTSCEEEEEECTTSCEEEE
T ss_pred cCCCcEEEEecCcCcchhhe
Confidence 99999999999988655443
No 120
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-29 Score=239.07 Aligned_cols=230 Identities=7% Similarity=0.050 Sum_probs=183.5
Q ss_pred EECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC---------CCe
Q 042434 274 AWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD---------GNE 344 (517)
Q Consensus 274 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~---------~~~ 344 (517)
.+.+++..+++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|+. +.+|+.. ...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~--i~~w~~~~~~~~~~~~~~~ 115 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNR--LLLLYPGNQITILDSKTNK 115 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTE--EEEEETTTEEEEEETTTCC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCe--EEEEEccCceEEeecCCcc
Confidence 345678899999999999999999999888775 456778888888 999999999 5555443 333
Q ss_pred -eEeeeCcCCCceEEEEEcc--CCCEEEEEeCCCcEEEEECCCceEEe---eccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434 345 -IKAWRGTRIPKVLDLAVTP--DGENLISVLSDKDIRILNLGTYAERV---ISEEHPITSLSVSVDCKNFIVNLNSQEIH 418 (517)
Q Consensus 345 -~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 418 (517)
+......+...|.+++|+| +++++++++.||.|++||++++.... ..+...+.+++|+|++.++++|+.||.|+
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 4455545556899999999 99999999999999999999887322 23455799999999999999999999999
Q ss_pred EEEcCCCCccceEEeC-cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC---CCCCee--EEEecCC
Q 042434 419 MWDVAGKWEKPFKYTG-HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG---HSMTVN--CVSWNPK 492 (517)
Q Consensus 419 ~~d~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~--~v~~~~~ 492 (517)
+||++++......+.. |... +.++.|+|+|.+|++++ |+.|++||+++++.+..+.. |...+. +++|+|+
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~---v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVDEEAK---IKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS 271 (343)
T ss_dssp EEESSCTTSCCEECCCCTTSC---EEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred EEECCCCCCCccEEeccCCCC---EEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence 9999987444366666 6655 66777799999999999 55999999999887666554 444454 5999999
Q ss_pred CCcEEEEeeC-CCcEEEeCCCCCC
Q 042434 493 RPKMLASASD-DHTIRIWGPCQSS 515 (517)
Q Consensus 493 ~~~~l~s~~~-dg~v~iw~~~~~~ 515 (517)
+ .+|++++. |+.|++|++.++.
T Consensus 272 g-~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 272 G-KNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp S-SEEEEEETTTTEEEEEEECTTT
T ss_pred C-CEEEEecCCCCcEEEEEEcccc
Confidence 9 78999888 9999999986654
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-28 Score=241.88 Aligned_cols=235 Identities=15% Similarity=0.194 Sum_probs=191.5
Q ss_pred CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc---EEEEeCC-------------------------------------
Q 042434 268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI---CKHTFGD------------------------------------- 307 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~------------------------------------- 307 (517)
.++.+++|+|+|++|+++ .++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999966655 57899999999998 6555542
Q ss_pred -----------------CCCceEEEEEeCCCCeE-EEeeCCCceeEEEEeCC---CCeeEeeeC-cCCCceEEEEEccCC
Q 042434 308 -----------------HGFIVSSCAWFPDSKRL-VCGSSDTEKGIFMCDCD---GNEIKAWRG-TRIPKVLDLAVTPDG 365 (517)
Q Consensus 308 -----------------~~~~v~~i~~~~~~~~l-~~~~~d~~v~i~~~~~~---~~~~~~~~~-~~~~~i~~~~~~~~~ 365 (517)
|...|.+++|+|++++| ++++.||. |.+|+.. +..+..+.. .+...|.+++|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKS--LLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTE--EEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCe--EEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence 23369999999999996 88999999 5555554 344444432 334579999999999
Q ss_pred CEEEEEeCCCcEEEEECCCceE------EeeccCCCeeEEEEcCC---CCEEEEEeCCCeEEEEEcCCCCccceE-EeCc
Q 042434 366 ENLISVLSDKDIRILNLGTYAE------RVISEEHPITSLSVSVD---CKNFIVNLNSQEIHMWDVAGKWEKPFK-YTGH 435 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~i~~~~~s~~---~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~ 435 (517)
+++++++.+|.+++|++.+... ....+...+.+++|+|+ ++++++++.|+.|++||+++. ..... ..+|
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~~~~~~h 240 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-FIVDKWLFGH 240 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-TCEEEECCCC
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-ceeeeeecCC
Confidence 9999999999999999987652 44567889999999999 999999999999999999876 33433 4566
Q ss_pred ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC-------------------------CCCCeeEEEec
Q 042434 436 SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG-------------------------HSMTVNCVSWN 490 (517)
Q Consensus 436 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------------h~~~v~~v~~~ 490 (517)
... +.++.|+ ++++|++|+.|+.|++||+.+++++..+.. +...|.+++|+
T Consensus 241 ~~~---v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 241 KHF---VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp SSC---EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred CCc---eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 655 5556668 999999999999999999999998888763 23578999999
Q ss_pred CCCCcEEEEee-CCCcEEEeCC
Q 042434 491 PKRPKMLASAS-DDHTIRIWGP 511 (517)
Q Consensus 491 ~~~~~~l~s~~-~dg~v~iw~~ 511 (517)
|++ .++++++ .|+.|++|++
T Consensus 317 ~~~-~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 317 KNL-PFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSS-SEEEEEETTCSEEEEEEE
T ss_pred CCC-CEEEEEECCCCeEEEEEe
Confidence 999 6788887 8999999999
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.8e-28 Score=231.99 Aligned_cols=240 Identities=13% Similarity=0.130 Sum_probs=181.7
Q ss_pred eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeE-EEeeCCCceeEE
Q 042434 258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRL-VCGSSDTEKGIF 336 (517)
Q Consensus 258 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~~~~~d~~v~i~ 336 (517)
..+.....|...|.+++|+|||++|++|+.+| +++|++.+++.......+ .+..+++.++++.+ ++++.|+. |.
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~--v~ 84 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEV--VH 84 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTE--EE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccE--EE
Confidence 34456688999999999999999999988775 789999888766554322 47788899988877 56777777 88
Q ss_pred EEeCCCCe-eEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCc-e-EEeeccCCCeeEEEEcCCCCEEEE--E
Q 042434 337 MCDCDGNE-IKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTY-A-ERVISEEHPITSLSVSVDCKNFIV--N 411 (517)
Q Consensus 337 ~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~-~~~~~~~~~i~~~~~s~~~~~l~~--~ 411 (517)
+||..... +..+. . ...|.++.++++. ++++ .++.|++||+.+. + ...... +...+++++ .++++ +
T Consensus 85 iWd~~~~~~~~~~~-~-~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg 155 (355)
T 3vu4_A 85 IWDDVKKQDVSRIK-V-DAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNE 155 (355)
T ss_dssp EEETTTTEEEEEEE-C-SSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEES
T ss_pred EEECCCCcEEEEEE-C-CCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCC
Confidence 89987544 34443 3 3489999998764 3333 5789999999887 3 111111 555667777 56666 5
Q ss_pred eCCCeEEEEEcCCCC--------------cc-ceEEeCcccCceEEEeecCCCCCcEEEEecCCCc-EEEEecCCCceeE
Q 042434 412 LNSQEIHMWDVAGKW--------------EK-PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQ-IYIWNRRNSKPIE 475 (517)
Q Consensus 412 ~~d~~i~~~d~~~~~--------------~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~ 475 (517)
+.+|.|++||+.+.. .+ ...+.+|... +.++.|+|+|++|++|+.||+ |++||+.+++++.
T Consensus 156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~---v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNP---IKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp SCTTCEEEEECCC------------------CCEEECCCSSC---EEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCc---eEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 789999999998652 01 5677788776 666777999999999999998 9999999999999
Q ss_pred Eec-C-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 476 ILS-G-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 476 ~~~-~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
++. + |.+.|++++|+|++ .+|++++.|++|++||+..+.
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCS
T ss_pred EEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCC
Confidence 998 5 99999999999999 799999999999999997653
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.7e-27 Score=233.46 Aligned_cols=284 Identities=11% Similarity=0.058 Sum_probs=216.5
Q ss_pred ccCcEEEEE---ECCCCCEEEEe--------------eCCCcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeE
Q 042434 221 HKNEVWFVQ---FSNNGEYLASS--------------SSDCSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKL 282 (517)
Q Consensus 221 h~~~v~~~~---~s~~~~~l~t~--------------~~dg~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l 282 (517)
....+..++ |+|++..++.. +.++.+.||.++.. ........+..+ ..+.+++|+|++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEE
Confidence 455677778 88877665543 23343456655432 233445555544 446699999977888
Q ss_pred EEEeCCCeEEEEECCCCcEEE-----EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCce
Q 042434 283 LTCGNAEVLKLWDVETGICKH-----TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKV 356 (517)
Q Consensus 283 ~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i 356 (517)
++++.++.|++||+.+++... .+..|...|.+++|+|++..+++++.|+. +++|+..+... ..+. .+...+
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~--v~~~d~~~~~~~~~~~-~~~~~~ 214 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA--VHVFDLKTLAYKATVD-LTGKWS 214 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE--EEEEETTTCCEEEEEE-CSSSSE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE--EEEEECCCceEEEEEc-CCCCCe
Confidence 888889999999999999887 34478889999999999999999999999 88899876444 4444 444589
Q ss_pred EEEEEccCCCEEEEEe-CCCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEe--------CCCeEEEEEcCCCC
Q 042434 357 LDLAVTPDGENLISVL-SDKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNL--------NSQEIHMWDVAGKW 426 (517)
Q Consensus 357 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~--------~d~~i~~~d~~~~~ 426 (517)
.+++|+|+++.+++++ .++.|++||+++++ .........+.+++|+|+++.+++++ .|+.|++||+.++
T Consensus 215 ~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~- 293 (433)
T 3bws_A 215 KILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE- 293 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT-
T ss_pred eEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC-
Confidence 9999999999886554 79999999998877 44455566799999999999999888 4889999999876
Q ss_pred ccceEEeCcccCceEEEeecCCCCCcE-EEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC---
Q 042434 427 EKPFKYTGHSQNKYVIRSCFGGLDGTF-IASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD--- 502 (517)
Q Consensus 427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~--- 502 (517)
...... .+... +..+.++|+++. +++++.|+.|++||+.+++.+..+. +...+.+++|+|++ ..+++++.
T Consensus 294 ~~~~~~-~~~~~---~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~ 367 (433)
T 3bws_A 294 KLIDTI-GPPGN---KRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDG-KYLYVSCRGPN 367 (433)
T ss_dssp EEEEEE-EEEEC---EEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTS-SEEEEEECCCC
T ss_pred cEEeec-cCCCC---cceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCC-CEEEEEecCCC
Confidence 333332 22222 445566899965 5667899999999999999888886 77889999999999 56766665
Q ss_pred ------------CCcEEEeCCCCCC
Q 042434 503 ------------DHTIRIWGPCQSS 515 (517)
Q Consensus 503 ------------dg~v~iw~~~~~~ 515 (517)
||.|++||+.+++
T Consensus 368 ~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 368 HPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp CTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred ccccccccccccceEEEEEECCCCc
Confidence 5799999998765
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-28 Score=255.44 Aligned_cols=243 Identities=19% Similarity=0.251 Sum_probs=196.6
Q ss_pred HHHhccccccCCCCCc-cccccCCC-cccccCC--CcccEEEeccccCcEEEEEECCC--CCEEEEeeCCCcEEEEEecC
Q 042434 180 AVTSQIDSCQYHNSSV-AISLYEDH-CCGRDQI--PTETVQILTEHKNEVWFVQFSNN--GEYLASSSSDCSAIIWKVLE 253 (517)
Q Consensus 180 ~~~~q~~~~~~~~~~~-~~~~~~~~-~~~~~~~--~~~~~~~l~~h~~~v~~~~~s~~--~~~l~t~~~dg~i~iw~~~~ 253 (517)
.+...+.++.+++... .++...++ ...|+.. .......+.+|.+.|++++|+|+ +++|++|+.||.|++||+.+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 4556677778877665 33444444 4455543 45678889999999999999998 99999999999999999986
Q ss_pred CCeeeEEEEeccCCCCEEEEEECCC--CCeEEEEeCCCeEEEEECCCCc--EEEEeCCCCCceEEEEEeC----------
Q 042434 254 DSKLTLKHTLRSHQNPVSFVAWSPD--DTKLLTCGNAEVLKLWDVETGI--CKHTFGDHGFIVSSCAWFP---------- 319 (517)
Q Consensus 254 ~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~---------- 319 (517)
+ .......+.+|...|.+++|+|+ ++.+++|+.||.|++||+.++. ....+..|...|.+++|+|
T Consensus 87 ~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~ 165 (753)
T 3jro_A 87 G-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (753)
T ss_dssp T-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--------
T ss_pred C-cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccc
Confidence 5 33466778899999999999999 9999999999999999998873 3445668999999999999
Q ss_pred ---CCCeEEEeeCCCceeEEEEeCCCC----eeEeeeCcCCCceEEEEEccC---CCEEEEEeCCCcEEEEECCCce---
Q 042434 320 ---DSKRLVCGSSDTEKGIFMCDCDGN----EIKAWRGTRIPKVLDLAVTPD---GENLISVLSDKDIRILNLGTYA--- 386 (517)
Q Consensus 320 ---~~~~l~~~~~d~~v~i~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~--- 386 (517)
++..+++|+.||. |.+||.... ........+...|.+++|+|+ ++.+++++.||.|++||+.+..
T Consensus 166 ~~~d~~~l~sgs~dg~--I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~ 243 (753)
T 3jro_A 166 GTKESRKFVTGGADNL--VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW 243 (753)
T ss_dssp -CGGGCCEEEEETTSC--EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC
T ss_pred cCCCCCEEEEEECCCe--EEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc
Confidence 5899999999999 555555432 222333445568999999999 8999999999999999998863
Q ss_pred ----EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 387 ----ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 387 ----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
.....+...+.+++|+|+++++++++.||.|++||+...
T Consensus 244 ~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 244 KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 222346778999999999999999999999999999754
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=2.5e-27 Score=229.96 Aligned_cols=277 Identities=16% Similarity=0.155 Sum_probs=218.8
Q ss_pred cccccC--CCcccE--EEeccccCcEEEEEECC--------------CCCEEEEeeCC------CcEEEEEecCCCeeeE
Q 042434 204 CCGRDQ--IPTETV--QILTEHKNEVWFVQFSN--------------NGEYLASSSSD------CSAIIWKVLEDSKLTL 259 (517)
Q Consensus 204 ~~~~~~--~~~~~~--~~l~~h~~~v~~~~~s~--------------~~~~l~t~~~d------g~i~iw~~~~~~~~~~ 259 (517)
...|+. ...+.+ ..+.+|...+..+++++ .+..++.++.+ +.|++||+....
T Consensus 95 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~---- 170 (415)
T 2hqs_A 95 YQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN---- 170 (415)
T ss_dssp EEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS----
T ss_pred EEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC----
Confidence 445665 566666 55889999888888775 25667666654 799999996432
Q ss_pred EEEeccCCCCEEEEEECCCCCeEEEEeCCC---eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEE-EeeCCCceeE
Q 042434 260 KHTLRSHQNPVSFVAWSPDDTKLLTCGNAE---VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLV-CGSSDTEKGI 335 (517)
Q Consensus 260 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~d~~v~i 335 (517)
...+.+|...|.+++|+|||++|++++.++ .|++||+.+++... +..+...+.+++|+|||+.|+ +++.++...|
T Consensus 171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 249 (415)
T ss_dssp CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence 245667889999999999999999999875 99999999998764 557788999999999999888 6677777779
Q ss_pred EEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CC--cEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEE
Q 042434 336 FMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DK--DIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVN 411 (517)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~ 411 (517)
+.||..+.....+..+. ..+.+++|+|+|+.+++++. ++ .|++||+.++. .....+...+.+++|+|+|++++++
T Consensus 250 ~~~d~~~~~~~~l~~~~-~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~ 328 (415)
T 2hqs_A 250 YVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV 328 (415)
T ss_dssp EEEETTTCCEEECCCCS-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEeCcCCC-CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEE
Confidence 99999877666555443 57999999999999988876 44 68888998876 4444566788899999999999988
Q ss_pred eCC---CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC---cEEEEecCCCceeEEecCCCCCee
Q 042434 412 LNS---QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS---QIYIWNRRNSKPIEILSGHSMTVN 485 (517)
Q Consensus 412 ~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~h~~~v~ 485 (517)
+.+ ..|.+||+.++.. ..+..+. .+....|+|+|++|++++.++ .|++||+. +.....+.+|.+.|.
T Consensus 329 ~~~~g~~~i~~~d~~~~~~--~~l~~~~----~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~ 401 (415)
T 2hqs_A 329 SSNGGQQHIAKQDLATGGV--QVLSSTF----LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVK 401 (415)
T ss_dssp EECSSCEEEEEEETTTCCE--EECCCSS----SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEE
T ss_pred ECcCCceEEEEEECCCCCE--EEecCCC----CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCc
Confidence 764 5899999987622 3343332 244566799999999988877 79999987 666788899999999
Q ss_pred EEEecCCC
Q 042434 486 CVSWNPKR 493 (517)
Q Consensus 486 ~v~~~~~~ 493 (517)
+++|+|..
T Consensus 402 ~~~~~~~~ 409 (415)
T 2hqs_A 402 FPAWSPYL 409 (415)
T ss_dssp EEEECCCC
T ss_pred CCcccccc
Confidence 99999975
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=8.7e-26 Score=225.77 Aligned_cols=303 Identities=11% Similarity=0.089 Sum_probs=224.7
Q ss_pred CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEe--cCCCeeeEEEEeccCCCCEEEEEECC---
Q 042434 203 HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKV--LEDSKLTLKHTLRSHQNPVSFVAWSP--- 277 (517)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~--~~~~~~~~~~~~~~h~~~v~~l~~s~--- 277 (517)
....++....+++.++..+.. +.+++|+|+|++|++++.|++|.+||+ .++ +...++. +...+..++|+|
T Consensus 160 ~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~---~~~~~i~-~g~~p~~va~sp~~~ 234 (543)
T 1nir_A 160 QIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP---TKVAEIK-IGIEARSVESSKFKG 234 (543)
T ss_dssp EEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC---EEEEEEE-CCSEEEEEEECCSTT
T ss_pred eEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC---cEEEEEe-cCCCcceEEeCCCcC
Confidence 345566667788888874333 899999999999999999999999999 544 4455555 456689999999
Q ss_pred -CCCeEEEEeC-CCeEEEEECCCCcEEEEeCCC-----------CCceEEEEEeCCCCeE-EEeeCCCceeEEEEeCCCC
Q 042434 278 -DDTKLLTCGN-AEVLKLWDVETGICKHTFGDH-----------GFIVSSCAWFPDSKRL-VCGSSDTEKGIFMCDCDGN 343 (517)
Q Consensus 278 -~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~~l-~~~~~d~~v~i~~~~~~~~ 343 (517)
||+++++++. +++|.+||..+++++..+..+ ...+.++.++|++..+ ++...++. |++||....
T Consensus 235 ~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~--i~vvd~~~~ 312 (543)
T 1nir_A 235 YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK--VLLVNYKDI 312 (543)
T ss_dssp CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE--EEEEECTTS
T ss_pred CCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCe--EEEEEecCC
Confidence 9999999885 899999999999998887542 2378999999987655 45556677 888887642
Q ss_pred e-eEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCCceEE-eec-----cCCCeeEEEEcCC-CCEEEEEe-C
Q 042434 344 E-IKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGTYAER-VIS-----EEHPITSLSVSVD-CKNFIVNL-N 413 (517)
Q Consensus 344 ~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~-~~~-----~~~~i~~~~~s~~-~~~l~~~~-~ 413 (517)
. +..........+.++.|+|+|+++++++ .+++|.+||..+++.. ... |......+ ++|+ +..++++. .
T Consensus 313 ~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~ 391 (543)
T 1nir_A 313 DNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLG 391 (543)
T ss_dssp SSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSS
T ss_pred CcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCC
Confidence 2 2211112234678899999999877655 5889999999998722 222 22222333 4677 55555554 5
Q ss_pred CCeEEEEEcCCC------CccceEEeCcccCceEEEeecCCCCCcEEEEec-------CCCcEEEEecCCCcee-EEe--
Q 042434 414 SQEIHMWDVAGK------WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS-------ENSQIYIWNRRNSKPI-EIL-- 477 (517)
Q Consensus 414 d~~i~~~d~~~~------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------~dg~i~iwd~~~~~~~-~~~-- 477 (517)
+++|.+||+.+. ++.+..+.++..... .+.++|+|++|++++ .+++|.+||+.+++.. ..+
T Consensus 392 d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~---~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v 468 (543)
T 1nir_A 392 DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSL---FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI 468 (543)
T ss_dssp SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC---CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH
T ss_pred CceEEEEEeCCCCCchhcCeEEEEEEcCCCCce---EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeec
Confidence 799999999762 477778887765533 344599999999987 2679999999999877 443
Q ss_pred ------cCCCCCeeEEEecCCCCcEEEEee----CCCcEEEeCCCCCCC
Q 042434 478 ------SGHSMTVNCVSWNPKRPKMLASAS----DDHTIRIWGPCQSSE 516 (517)
Q Consensus 478 ------~~h~~~v~~v~~~~~~~~~l~s~~----~dg~v~iw~~~~~~~ 516 (517)
..+...+..++|+|+|..++++.. .|+.|.|||..+++.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 469 AEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp HHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred hhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 356788999999999955554432 479999999998764
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=6.3e-26 Score=226.79 Aligned_cols=275 Identities=10% Similarity=0.095 Sum_probs=215.0
Q ss_pred EECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC--CCCcEEEEeC
Q 042434 229 QFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV--ETGICKHTFG 306 (517)
Q Consensus 229 ~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~ 306 (517)
+|+|++.++++++.|++|.+||..++ +...++..+.. +.+++|+|||++|++++.|++|.+||+ .+++++.++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~---~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSK---KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTC---CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCc---eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 37899999999999999999999766 34456653333 899999999999999999999999999 8899888886
Q ss_pred CCCCceEEEEEeC----CCCeEEEeeC-CCceeEEEEeCCCC-eeEeeeC----------cCCCceEEEEEccCCCE-EE
Q 042434 307 DHGFIVSSCAWFP----DSKRLVCGSS-DTEKGIFMCDCDGN-EIKAWRG----------TRIPKVLDLAVTPDGEN-LI 369 (517)
Q Consensus 307 ~~~~~v~~i~~~~----~~~~l~~~~~-d~~v~i~~~~~~~~-~~~~~~~----------~~~~~i~~~~~~~~~~~-l~ 369 (517)
+...+.+++|+| +|+++++++. +++ |.+||..+. .+..+.. +....+..+.++|++.. ++
T Consensus 220 -~g~~p~~va~sp~~~~dg~~l~v~~~~~~~--v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v 296 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDRYTIAGAYWPPQ--FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 296 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTTEEEEEEEESSE--EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred -cCCCcceEEeCCCcCCCCCEEEEEEccCCe--EEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence 456789999999 9999999885 788 777887653 3344332 12336889999998765 55
Q ss_pred EEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceEEeC----cccCceE
Q 042434 370 SVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPFKYTG----HSQNKYV 441 (517)
Q Consensus 370 ~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~----~~~~~~~ 441 (517)
+...++.|.+||..+.. .........+..+.|+|+|+++++++ .++.|.+||..++ .....+.. |....
T Consensus 297 s~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g-- 373 (543)
T 1nir_A 297 NVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRG-- 373 (543)
T ss_dssp EETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSBCCTTC--
T ss_pred EECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCCCCCCCCC--
Confidence 66778999999998754 22445566788999999999877665 5889999999887 55555543 32211
Q ss_pred EEeecCCCC-CcEEEEec-CCCcEEEEecCC-------CceeEEecCCCCCeeEEEecCCCCcEEEEee-------CCCc
Q 042434 442 IRSCFGGLD-GTFIASGS-ENSQIYIWNRRN-------SKPIEILSGHSMTVNCVSWNPKRPKMLASAS-------DDHT 505 (517)
Q Consensus 442 i~~~~~s~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-------~dg~ 505 (517)
... ++|+ +.+++++. .|++|.+||+.+ ++++.++.+|.+.+..++++|++ ..|++++ .+++
T Consensus 374 ~~~--~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg-~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 374 ANF--VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS-SHLYVDTTFNPDARISQS 450 (543)
T ss_dssp EEE--EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-CEEEECCTTCSSHHHHTC
T ss_pred ccc--CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC-CcEEEecCCCCCcccCce
Confidence 111 2566 66677765 689999999998 89999999999999999999999 6788776 2789
Q ss_pred EEEeCCCCCCC
Q 042434 506 IRIWGPCQSSE 516 (517)
Q Consensus 506 v~iw~~~~~~~ 516 (517)
|.+||+.+++.
T Consensus 451 v~v~d~~~~~~ 461 (543)
T 1nir_A 451 VAVFDLKNLDA 461 (543)
T ss_dssp EEEEETTCTTS
T ss_pred EEEEECCCCCC
Confidence 99999998764
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=6.8e-27 Score=226.94 Aligned_cols=282 Identities=14% Similarity=0.143 Sum_probs=213.3
Q ss_pred cCcEEEEEECCCCC-EEEEee----CCC----cEEEEEe--cCCCeeeEEEEeccCCCCEEEEEECC-------------
Q 042434 222 KNEVWFVQFSNNGE-YLASSS----SDC----SAIIWKV--LEDSKLTLKHTLRSHQNPVSFVAWSP------------- 277 (517)
Q Consensus 222 ~~~v~~~~~s~~~~-~l~t~~----~dg----~i~iw~~--~~~~~~~~~~~~~~h~~~v~~l~~s~------------- 277 (517)
...+....|++.|. ++++|+ .|| .+++||+ .++... ....+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL-AQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE-EEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE-eeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 45677788888764 666776 467 8999999 766532 2356788888888777764
Q ss_pred -CCCeEEEEeCC------CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCC-ceeEEEEeCCCCeeEeee
Q 042434 278 -DDTKLLTCGNA------EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT-EKGIFMCDCDGNEIKAWR 349 (517)
Q Consensus 278 -~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~-~v~i~~~~~~~~~~~~~~ 349 (517)
.+..++.++.+ +.|++||+.. .....+..|...+.+++|+|+|+.|++++.++ .-.|++||..+.....+.
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~ 219 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA 219 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee
Confidence 25666666554 7999999975 44566768889999999999999999999874 233999999876666555
Q ss_pred CcCCCceEEEEEccCCCEEE-EEeCCCc--EEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeC-CC--eEEEEEc
Q 042434 350 GTRIPKVLDLAVTPDGENLI-SVLSDKD--IRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLN-SQ--EIHMWDV 422 (517)
Q Consensus 350 ~~~~~~i~~~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~--~i~~~d~ 422 (517)
.+. ..+.+++|+|||+.|+ +++.++. |++||+.++. .....+...+.+++|+|+|+++++++. ++ .|++||+
T Consensus 220 ~~~-~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 220 SFP-RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CCS-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCC-CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 443 4799999999999887 5665554 9999998877 445566678999999999999998886 44 6778888
Q ss_pred CCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC---CcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEE
Q 042434 423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN---SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLAS 499 (517)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s 499 (517)
.++. ...+..+.. .+..+.|+|+|++|++++.+ +.|++||+.+++.. .+..|. .+.+++|+|+| ..|++
T Consensus 299 ~~~~--~~~l~~~~~---~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg-~~l~~ 370 (415)
T 2hqs_A 299 NGGA--PQRITWEGS---QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNG-TMVIY 370 (415)
T ss_dssp TSSC--CEECCCSSS---EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTS-SEEEE
T ss_pred CCCC--EEEEecCCC---cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCC-CEEEE
Confidence 7652 233333322 34456679999999988764 58999999988764 455554 89999999999 67777
Q ss_pred eeCCC---cEEEeCCCCC
Q 042434 500 ASDDH---TIRIWGPCQS 514 (517)
Q Consensus 500 ~~~dg---~v~iw~~~~~ 514 (517)
++.|+ .|++|++..+
T Consensus 371 ~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 371 SSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp EEEETTEEEEEEEETTSC
T ss_pred EEcCCCccEEEEEECCCC
Confidence 77766 7999998754
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=2.6e-26 Score=240.80 Aligned_cols=282 Identities=11% Similarity=0.077 Sum_probs=212.9
Q ss_pred cCcEEEEEECCCCCEEEEeeC-CC-----cEEEEEecCCCeeeEEEEeccCC------------------------CCEE
Q 042434 222 KNEVWFVQFSNNGEYLASSSS-DC-----SAIIWKVLEDSKLTLKHTLRSHQ------------------------NPVS 271 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~-dg-----~i~iw~~~~~~~~~~~~~~~~h~------------------------~~v~ 271 (517)
...|.+++|||||++|++++. |+ .|++||+.++.. ...+..+. ..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQT---RLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCE---EEEECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCce---eEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 557899999999999999998 88 899999976643 23333332 2378
Q ss_pred EEEECCCCCeEEEEeCCCeEEEEECCCCc--EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee
Q 042434 272 FVAWSPDDTKLLTCGNAEVLKLWDVETGI--CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR 349 (517)
Q Consensus 272 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~ 349 (517)
+++|+|||++|++++. +.|.+||+.++. ....+..+...+.+++|+|||++|++++.+ . |++|+..+.......
T Consensus 113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~-~--i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGR-N--LWVIDLASGRQMQLT 188 (741)
T ss_dssp CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETT-E--EEEEETTTTEEEECC
T ss_pred eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCC-c--EEEEecCCCCEEEec
Confidence 9999999999999886 899999999883 344566778889999999999999998854 4 999999876665544
Q ss_pred CcCCCc----------------eEEEEEccCCCEEEEEeCCC---------------------------------cEEEE
Q 042434 350 GTRIPK----------------VLDLAVTPDGENLISVLSDK---------------------------------DIRIL 380 (517)
Q Consensus 350 ~~~~~~----------------i~~~~~~~~~~~l~~~~~dg---------------------------------~i~i~ 380 (517)
...... +..+.|+|||+.|++++.|+ .|++|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 333221 47799999999999987765 78999
Q ss_pred ECCC-ceEEee----ccCCCeeEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCCccceEEeCcccC-ceEEEeecCCC
Q 042434 381 NLGT-YAERVI----SEEHPITSLSVSVDCKNFIVNLN-----SQEIHMWDVAGKWEKPFKYTGHSQN-KYVIRSCFGGL 449 (517)
Q Consensus 381 d~~~-~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~-~~~i~~~~~s~ 449 (517)
|+.+ ++.... .+...+..++| |||+.+++++. +..|++||+.++ .....+..+... ...+....|+|
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEECSSCCCCCSCCEECT
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCCCCcCCcCCceEECC
Confidence 9988 763222 24567899999 99999997764 567999999876 333333333221 00133556799
Q ss_pred CCcEEEEecCCCcEEEEecC-CCceeEEecCCCCCeeEE-EecCCCCcEEEEeeCCC--cEEEeCCCC
Q 042434 450 DGTFIASGSENSQIYIWNRR-NSKPIEILSGHSMTVNCV-SWNPKRPKMLASASDDH--TIRIWGPCQ 513 (517)
Q Consensus 450 ~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~v-~~~~~~~~~l~s~~~dg--~v~iw~~~~ 513 (517)
||+++++++.||.+.+|.+. ++. ...+..|...|.++ .|+|++..++++++.|+ .+++|++..
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 99999999999987777664 345 77888888889887 59999954556666666 899998764
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.2e-25 Score=204.07 Aligned_cols=193 Identities=12% Similarity=0.067 Sum_probs=141.2
Q ss_pred cEEEEEECCC----CCEEEEeeC--------------------CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECC--
Q 042434 224 EVWFVQFSNN----GEYLASSSS--------------------DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSP-- 277 (517)
Q Consensus 224 ~v~~~~~s~~----~~~l~t~~~--------------------dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~-- 277 (517)
.|++++|+|| ++++++++. |+.|++|++..+. +....+.+|...++.++|+|
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG--~~~~s~~~~~~~v~~l~fs~~~ 190 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG--GGKENQFLMPPEETILTFAEVQ 190 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS--CEEEEEEECCCSSCEEEEEEEE
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC--ceeeeeccCCCceeeEEeeccC
Confidence 5667777778 777877653 7888888885432 34456667888888888888
Q ss_pred -CCCeEEEEeCCCeEEEEECCCCcEEEEeCCCC---CceEEEEEeCCCCeE------------EEeeCCCceeEEEEeCC
Q 042434 278 -DDTKLLTCGNAEVLKLWDVETGICKHTFGDHG---FIVSSCAWFPDSKRL------------VCGSSDTEKGIFMCDCD 341 (517)
Q Consensus 278 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~i~~~~~~~~l------------~~~~~d~~v~i~~~~~~ 341 (517)
++.+|++++.|++|+|||+.+|++++++.+|. ..+.+++|+|+|.++ ++|+.|++ +..|+..
T Consensus 191 g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t--IklWd~~ 268 (356)
T 2w18_A 191 GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ--LIVINPK 268 (356)
T ss_dssp TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE--EEEEETT
T ss_pred CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE--EEEEECC
Confidence 77999999999999999999999999997653 467788999999887 45677788 6778887
Q ss_pred CCeeEe-e----eCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCe-eEEEEcCCCCEEEEEeC
Q 042434 342 GNEIKA-W----RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPI-TSLSVSVDCKNFIVNLN 413 (517)
Q Consensus 342 ~~~~~~-~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i-~~~~~s~~~~~l~~~~~ 413 (517)
+..... . ...+...+.+.. .++..+++++.|++|++||+.+++ .....|...+ .+++|+|+|++|++|+.
T Consensus 269 tgk~l~v~~~~~p~Gh~~~~lsg~--~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~ 346 (356)
T 2w18_A 269 TTLSVGVMLYCLPPGQAGRFLEGD--VKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK 346 (356)
T ss_dssp TTEEEEEEEECCCTTCCCCEEEEE--EETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred CCEEEEEEEeeccCCCcceeEccc--cCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence 654422 2 123323333333 347789999999999999999988 2333455544 46899999999999999
Q ss_pred CCeEEEEEc
Q 042434 414 SQEIHMWDV 422 (517)
Q Consensus 414 d~~i~~~d~ 422 (517)
|++|++||+
T Consensus 347 D~TIklWd~ 355 (356)
T 2w18_A 347 DGNIFVYHY 355 (356)
T ss_dssp TSCEEEEEE
T ss_pred CCcEEEecC
Confidence 999999996
No 131
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=2.1e-25 Score=206.33 Aligned_cols=255 Identities=15% Similarity=0.130 Sum_probs=197.7
Q ss_pred EeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-CcEEEEeCCC-CCceEEEE
Q 042434 239 SSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET-GICKHTFGDH-GFIVSSCA 316 (517)
Q Consensus 239 t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~~i~ 316 (517)
.++.|+.|++||+.++.. ..+..|...|.+++|+|++++|++++ ++.|.+||+.+ ++.......+ ...+.+++
T Consensus 17 ~~~~~~~i~~~d~~~~~~----~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM----RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHG 91 (297)
T ss_dssp -CCCCEEEEEEETTTTEE----EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred CCCcceeEEEEeCCCCce----eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceE
Confidence 356789999999976532 23455789999999999999999976 78999999999 8877766555 47789999
Q ss_pred EeCCCCeEEEee--CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEE-EEeCCCcEEEEEC--CCce-EEee
Q 042434 317 WFPDSKRLVCGS--SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLI-SVLSDKDIRILNL--GTYA-ERVI 390 (517)
Q Consensus 317 ~~~~~~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~--~~~~-~~~~ 390 (517)
|+|+++++++++ .++...+|.++..+.....+.... .+..++|+|+++.++ ++..++.+.+|++ .+.. ....
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 169 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL--PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT 169 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS--SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC--CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc
Confidence 999999999998 446777999998876665555444 488899999999877 7778998899885 3444 4445
Q ss_pred ccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC---------
Q 042434 391 SEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN--------- 460 (517)
Q Consensus 391 ~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------- 460 (517)
.+...+.+++|+|+++.+++++ .++.+.+|++.........+..+. ..+..+.|+|+|++|++++.+
T Consensus 170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 246 (297)
T 2ojh_A 170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA---YGDWFPHPSPSGDKVVFVSYDADVFDHPRD 246 (297)
T ss_dssp CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS---EEEEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC---cccCCeEECCCCCEEEEEEcCCCCCccccc
Confidence 5667899999999999888776 488999999863324444444443 345566779999999988876
Q ss_pred --CcEEEEecCCCce--eEEecCCCCCeeEEEecCCCCcEEEEeeCCC
Q 042434 461 --SQIYIWNRRNSKP--IEILSGHSMTVNCVSWNPKRPKMLASASDDH 504 (517)
Q Consensus 461 --g~i~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg 504 (517)
+.|++||+.+++. +..+.+|...+.+++|+|++ ..|++++.|.
T Consensus 247 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~ 293 (297)
T 2ojh_A 247 LDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDG-DEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTS-SEEEEEEECC
T ss_pred CceEEEEEecCCCCceeeeccCCCCcccccceECCCC-CEEEEEEecc
Confidence 5699999998865 44455788899999999999 5666666543
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=2.1e-24 Score=204.25 Aligned_cols=270 Identities=12% Similarity=0.102 Sum_probs=187.4
Q ss_pred EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC-CeEEEEECC--CCcE--EEEeCCCCC
Q 042434 236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-EVLKLWDVE--TGIC--KHTFGDHGF 310 (517)
Q Consensus 236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g~i~iwd~~--~~~~--~~~~~~~~~ 310 (517)
.+++++.|+.|++|++........... ..|...+.+++|+|++++|++++.+ +.|.+|++. +++. +..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 444557899999999964433344443 3477789999999999999988886 899999997 5553 34444333
Q ss_pred ceEEEEEeCCCCeEEEeeC-CCceeEEEEeC-CCC--eeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCC-
Q 042434 311 IVSSCAWFPDSKRLVCGSS-DTEKGIFMCDC-DGN--EIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGT- 384 (517)
Q Consensus 311 ~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~-~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~- 384 (517)
.+.+++|+|+++++++++. ++. +.+|+. .+. ........ ...+.+++|+|+++.+++++ .++.|.+||+.+
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~--i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGN--VSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTE--EEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CCcEEEEcCCCCEEEEEecCCCe--EEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 7889999999998877765 777 555555 221 12222222 23588899999999888887 899999999987
Q ss_pred ceE------Eee-ccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCcc---ceEEeCcc---cCceEEEeecCCCC
Q 042434 385 YAE------RVI-SEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEK---PFKYTGHS---QNKYVIRSCFGGLD 450 (517)
Q Consensus 385 ~~~------~~~-~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~---~~~~~~~~---~~~~~i~~~~~s~~ 450 (517)
+.. ... .....+..++|+|+++++++++ .++.|.+||+...... ........ .....+..+.++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 241 (343)
T 1ri6_A 162 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD 241 (343)
T ss_dssp SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred CceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence 542 112 2345788999999999876655 7899999999542111 11221111 11122334566999
Q ss_pred CcEEE-EecCCCcEEEEecC--C--CceeEEecCCCCCeeEEEecCCCCcEEEEee-CCCcEEEeCCC
Q 042434 451 GTFIA-SGSENSQIYIWNRR--N--SKPIEILSGHSMTVNCVSWNPKRPKMLASAS-DDHTIRIWGPC 512 (517)
Q Consensus 451 ~~~l~-~~~~dg~i~iwd~~--~--~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~v~iw~~~ 512 (517)
|++++ ++..++.|++||+. + .+.+..+..+.. +.+++|+|++ ..|++++ .|+.|.+|+++
T Consensus 242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg-~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSG-KYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTS-SEEEEECTTTCEEEEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCC-CEEEEecCCCCeEEEEEEc
Confidence 98777 45578999999998 3 345555655544 8999999999 5555555 78999999554
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=3.4e-24 Score=201.99 Aligned_cols=274 Identities=11% Similarity=0.092 Sum_probs=194.4
Q ss_pred EECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-CCeEEEEECCCCcE-EEEe
Q 042434 229 QFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-AEVLKLWDVETGIC-KHTF 305 (517)
Q Consensus 229 ~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~-~~~~ 305 (517)
.|.++++ .+++++.++.|.+||..++.. ...+..+...+ +++|+|+++++++++. ++.|.+||+.+++. ...+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 79 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEI---LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI 79 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCE---EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccce---eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence 4556555 467778899999999976643 34444556667 9999999997776665 88999999999987 7677
Q ss_pred CCCCCceEEEEEeCCCCeEEEeeCCC---ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE-eCCCc-EEEE
Q 042434 306 GDHGFIVSSCAWFPDSKRLVCGSSDT---EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV-LSDKD-IRIL 380 (517)
Q Consensus 306 ~~~~~~v~~i~~~~~~~~l~~~~~d~---~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~-i~i~ 380 (517)
..+..+..+++|+|++++++++..++ . |++|+..+.......... ....+++|+|+|++++++ ..++. +.+|
T Consensus 80 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~--i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~ 156 (331)
T 3u4y_A 80 QEGQSSMADVDITPDDQFAVTVTGLNHPFN--MQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRF 156 (331)
T ss_dssp EECSSCCCCEEECTTSSEEEECCCSSSSCE--EEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred ccCCCCccceEECCCCCEEEEecCCCCccc--EEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEE
Confidence 66666665599999999999655552 5 899998865543333222 357899999999865555 55588 9999
Q ss_pred ECCCce------EEeeccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCcc---ceEEeCcccCceEEEeecCCCC
Q 042434 381 NLGTYA------ERVISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEK---PFKYTGHSQNKYVIRSCFGGLD 450 (517)
Q Consensus 381 d~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~---~~~~~~~~~~~~~i~~~~~s~~ 450 (517)
++.... .........+..++|+|+|++++++. .++.|.+||+.++ .. ...+..... ...+.++|+
T Consensus 157 ~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~~~~~~~----~~~~~~spd 231 (331)
T 3u4y_A 157 KIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP-ENITLLNAVGTNNL----PGTIVVSRD 231 (331)
T ss_dssp EECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST-TSCEEEEEEECSSC----CCCEEECTT
T ss_pred EECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC-cccceeeeccCCCC----CceEEECCC
Confidence 987532 12234456689999999999766555 5889999999876 33 334433222 334556999
Q ss_pred CcEEEEec-CCCcEEEEecCCCce--eEEecCC----CC---CeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 451 GTFIASGS-ENSQIYIWNRRNSKP--IEILSGH----SM---TVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 451 ~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~h----~~---~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
|+++++++ .++.|.+||..+++. +..+..+ .. ...+++|+|++..+++++..++.|.+|++...
T Consensus 232 g~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 232 GSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp SSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 99776554 578899999999887 4444322 22 23568999999545566667789999999764
No 134
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=3.3e-25 Score=213.83 Aligned_cols=203 Identities=13% Similarity=0.173 Sum_probs=151.1
Q ss_pred EEEeccccCcEEEEEECC--------CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-CeEEEE
Q 042434 215 VQILTEHKNEVWFVQFSN--------NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTC 285 (517)
Q Consensus 215 ~~~l~~h~~~v~~~~~s~--------~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~ 285 (517)
+..+.||.+.|++++|+| ||++||+|+.|++|+|||+.++ .....+..|..+|.+++|+|++ .+|+++
T Consensus 129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 205 (393)
T 4gq1_A 129 LGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE---GPILAGYPLSSPGISVQFRPSNPNQLIVG 205 (393)
T ss_dssp ECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT---EEEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred ecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC---ceeeeecCCCCCcEEEEECCCCCceEEec
Confidence 345789999999999998 8899999999999999999765 3445667789999999999987 579999
Q ss_pred eCCCeEEEEECCCCcEEEEe-------------------------CCCCCceEEEEEe-CCCCeEEEeeCCCceeEEEEe
Q 042434 286 GNAEVLKLWDVETGICKHTF-------------------------GDHGFIVSSCAWF-PDSKRLVCGSSDTEKGIFMCD 339 (517)
Q Consensus 286 ~~dg~i~iwd~~~~~~~~~~-------------------------~~~~~~v~~i~~~-~~~~~l~~~~~d~~v~i~~~~ 339 (517)
+.||+|++||+.+++..... .+|...+.++.|+ |+++.+++++.|+. +.+||
T Consensus 206 ~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~--i~vwd 283 (393)
T 4gq1_A 206 ERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGA--WLRWN 283 (393)
T ss_dssp ETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSE--EEEEE
T ss_pred CCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCC--EEEEE
Confidence 99999999999887654322 3567788899987 79999999999999 77777
Q ss_pred CCCCeeEeeeCcCC------------------CceEEEEEcc--CCCEEEEEeCCCcEEEEECCCce--EEeeccCCCee
Q 042434 340 CDGNEIKAWRGTRI------------------PKVLDLAVTP--DGENLISVLSDKDIRILNLGTYA--ERVISEEHPIT 397 (517)
Q Consensus 340 ~~~~~~~~~~~~~~------------------~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~ 397 (517)
............+. .......++| ++.++++|+.||.|++||+.++. .....+..+|.
T Consensus 284 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~ 363 (393)
T 4gq1_A 284 LFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIV 363 (393)
T ss_dssp C-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEE
T ss_pred CccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEE
Confidence 65322211111110 1122233443 33466778889999999998876 55667888999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcC
Q 042434 398 SLSVSVDCKNFIVNLNSQEIHMWDVA 423 (517)
Q Consensus 398 ~~~~s~~~~~l~~~~~d~~i~~~d~~ 423 (517)
+++|+|+|++|++++.+| +.+|.+.
T Consensus 364 svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 364 DFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 999999999999998665 6666653
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=3.5e-24 Score=232.27 Aligned_cols=292 Identities=11% Similarity=0.100 Sum_probs=197.0
Q ss_pred CCCcccEEEeccccCcEEEEEECCCCCEEEEeeCC------CcEEEEEecCCCeeeEEEEeccCCCCE-------EEEEE
Q 042434 209 QIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSD------CSAIIWKVLEDSKLTLKHTLRSHQNPV-------SFVAW 275 (517)
Q Consensus 209 ~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~~~h~~~v-------~~l~~ 275 (517)
...+.....+.+|.+.|.+++|||||++||+++.+ ..|++|+..++. ...+..|...+ .+++|
T Consensus 39 ~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~----~~~lt~~~~~~~~~~~~~~~~~~ 114 (1045)
T 1k32_A 39 DLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE----IKRITYFSGKSTGRRMFTDVAGF 114 (1045)
T ss_dssp ETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE----EEECCCCCEEEETTEECSEEEEE
T ss_pred ECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC----eEEcccCCCcccccccccccccC
Confidence 34455677888999999999999999999988653 378999986542 35678888888 99999
Q ss_pred CCCCCeEEEEeCC------CeEEEEECCCCcEEE----------------------------------------------
Q 042434 276 SPDDTKLLTCGNA------EVLKLWDVETGICKH---------------------------------------------- 303 (517)
Q Consensus 276 s~~~~~l~s~~~d------g~i~iwd~~~~~~~~---------------------------------------------- 303 (517)
+|||+.+++++.+ ..|.+|++.+++...
T Consensus 115 SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~ 194 (1045)
T 1k32_A 115 DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG 194 (1045)
T ss_dssp CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT
T ss_pred CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCC
Confidence 9999977777654 368888876654332
Q ss_pred ---EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 042434 304 ---TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRIL 380 (517)
Q Consensus 304 ---~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 380 (517)
.+..|...+.++.|+++ ..+++++.++...+|.++..+.....+..+. .+...+|+|+|+.++.+ .++.|++|
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~ 270 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIF 270 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEE
T ss_pred CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEe
Confidence 12345666778888887 6666777888888888887655444433322 23334555555544444 24455555
Q ss_pred EC----------------------------------------------------CCce-EEeeccCC-CeeEEEEcCCCC
Q 042434 381 NL----------------------------------------------------GTYA-ERVISEEH-PITSLSVSVDCK 406 (517)
Q Consensus 381 d~----------------------------------------------------~~~~-~~~~~~~~-~i~~~~~s~~~~ 406 (517)
|+ .++. .....+.. .+..++|+ +|+
T Consensus 271 d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~ 349 (1045)
T 1k32_A 271 NPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKV 349 (1045)
T ss_dssp CTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEE
T ss_pred cCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCC
Confidence 54 3333 11122222 34444444 444
Q ss_pred EEEEEeCCCeEE-EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCee
Q 042434 407 NFIVNLNSQEIH-MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVN 485 (517)
Q Consensus 407 ~l~~~~~d~~i~-~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 485 (517)
.+++++.++.+. +||+.++. ...+.++.. .+..+.|+|||++|++++.++.|++||+.+++....+.+|.+.+.
T Consensus 350 ~l~~~s~~~~l~~~~d~~~~~--~~~l~~~~~---~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~ 424 (1045)
T 1k32_A 350 AFIHGTREGDFLGIYDYRTGK--AEKFEENLG---NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 424 (1045)
T ss_dssp EEEEEETTEEEEEEEETTTCC--EEECCCCCC---SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred eEEEEECCCceEEEEECCCCC--ceEecCCcc---ceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence 444444444455 55554431 112222322 245566799999999999999999999999998888878999999
Q ss_pred EEEecCCCCcEEEEeeCCC----------cEEEeCCCCCC
Q 042434 486 CVSWNPKRPKMLASASDDH----------TIRIWGPCQSS 515 (517)
Q Consensus 486 ~v~~~~~~~~~l~s~~~dg----------~v~iw~~~~~~ 515 (517)
+++|+|+| ..|++++.++ .|++||+.+++
T Consensus 425 ~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 425 DFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred ceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 99999999 6777776644 89999998764
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=3.2e-24 Score=224.92 Aligned_cols=278 Identities=12% Similarity=0.063 Sum_probs=203.9
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEecCCC--eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE
Q 042434 225 VWFVQFSNNGEYLASSSSDCSAIIWKVLEDS--KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK 302 (517)
Q Consensus 225 v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 302 (517)
|.+++|||||++|++++. +.|++||+.++. .. ..+..|...+.+++|+|||++|++++ ++.|++||+.+++..
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~---~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV---RQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM 185 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC---CBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE---EEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE
Confidence 889999999999999886 899999997652 22 34667888899999999999999987 469999999998876
Q ss_pred EEeCCCCCc----------------eEEEEEeCCCCeEEEeeCCC-------------------------------ceeE
Q 042434 303 HTFGDHGFI----------------VSSCAWFPDSKRLVCGSSDT-------------------------------EKGI 335 (517)
Q Consensus 303 ~~~~~~~~~----------------v~~i~~~~~~~~l~~~~~d~-------------------------------~v~i 335 (517)
.....+... +.+++|+|||++|++++.|+ .+.+
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 655444332 47799999999999987664 2358
Q ss_pred EEEeCCC-CeeEeeeC--cCCCceEEEEEccCCCEEEEEeC-----CCcEEEEECCCceEE-ee-ccCC----CeeEEEE
Q 042434 336 FMCDCDG-NEIKAWRG--TRIPKVLDLAVTPDGENLISVLS-----DKDIRILNLGTYAER-VI-SEEH----PITSLSV 401 (517)
Q Consensus 336 ~~~~~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~-~~-~~~~----~i~~~~~ 401 (517)
++||..+ ........ .+...+..++| |||+.|++++. +..|++||+.++... .. .+.. .+..++|
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 9999877 66554432 24457899999 99999987764 567999999987722 22 2221 4568999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEee-cCCCCCcEEE-EecCCC--cEEEEecCC-CceeEE
Q 042434 402 SVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSC-FGGLDGTFIA-SGSENS--QIYIWNRRN-SKPIEI 476 (517)
Q Consensus 402 s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~-~~~~dg--~i~iwd~~~-~~~~~~ 476 (517)
+|||+.++++..++.+.+|.+..... ...+..+... +..+ .++|+|+.|+ +++.++ .+++|++.. +.....
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~---v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~ 420 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWS---VDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQR 420 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSC---EEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEE
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceE---EEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeee
Confidence 99999888888899888887653223 4445444333 3333 4689998775 455555 899999864 666677
Q ss_pred ecCCCCCeeEEEecCCCCcEEEEeeCC---CcEEEeCCCC
Q 042434 477 LSGHSMTVNCVSWNPKRPKMLASASDD---HTIRIWGPCQ 513 (517)
Q Consensus 477 ~~~h~~~v~~v~~~~~~~~~l~s~~~d---g~v~iw~~~~ 513 (517)
+.. ...+.+++|+|++..++++++.. +.+.+|+...
T Consensus 421 l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 421 LSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp CCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred ccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 765 67789999999995444444443 4578887643
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=8.5e-24 Score=220.44 Aligned_cols=282 Identities=11% Similarity=0.054 Sum_probs=204.2
Q ss_pred CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC----
Q 042434 223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET---- 298 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~---- 298 (517)
..|.+++|||| +.++.+. ++.|++||+.++. . ..+..+...+.+++|+|||++|+++ .++.|++||+.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~---~-~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARK---V-TYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTE---E-EEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCc---e-EEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence 56999999999 6666553 5999999997552 2 2344567788999999999999985 689999999998
Q ss_pred -CcEEEEeCCCCCc--------------eEEEEEeCCCCeEEEeeCC-------------------------------Cc
Q 042434 299 -GICKHTFGDHGFI--------------VSSCAWFPDSKRLVCGSSD-------------------------------TE 332 (517)
Q Consensus 299 -~~~~~~~~~~~~~--------------v~~i~~~~~~~~l~~~~~d-------------------------------~~ 332 (517)
++.......+... +.++.|+|||++|++++.| +.
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 8776655444332 4789999999999998732 34
Q ss_pred eeEEEEeCCCCeeEeeeC--cCCCceEEEEEccCCCEEEEEeCCC-----cEEEEECCCc-eE-Eee--ccCC---CeeE
Q 042434 333 KGIFMCDCDGNEIKAWRG--TRIPKVLDLAVTPDGENLISVLSDK-----DIRILNLGTY-AE-RVI--SEEH---PITS 398 (517)
Q Consensus 333 v~i~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~-~~-~~~--~~~~---~i~~ 398 (517)
..+++||..+........ .+...+.+++|+|||+.+++++.++ .|++||+.++ .. ... .... .+..
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP 314 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence 569999998776554432 3345789999999999999887775 8999999988 42 222 1111 2467
Q ss_pred EEEcC--CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec-CCC----cEEEEecCCC
Q 042434 399 LSVSV--DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS-ENS----QIYIWNRRNS 471 (517)
Q Consensus 399 ~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg----~i~iwd~~~~ 471 (517)
++|+| +|++++++..++.+++|++.........+..+... ......|+|+|+.|+.++ .++ .|+.||..++
T Consensus 315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~--v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 315 LTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWE--VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp CEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSC--EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred ceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeE--EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 89999 99999999899999999876322444445444332 122256699998776554 444 6777888777
Q ss_pred ceeEEecCCCCCeeEEEecCCCCcEEEEeeCC---CcEEEeCCCCCC
Q 042434 472 KPIEILSGHSMTVNCVSWNPKRPKMLASASDD---HTIRIWGPCQSS 515 (517)
Q Consensus 472 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d---g~v~iw~~~~~~ 515 (517)
+ ...+. |...+.+++|+|++..++++++.+ +.|++||+.+++
T Consensus 393 ~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 393 K-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp C-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred C-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 6 44444 677899999999994344444444 569999987764
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=2.9e-24 Score=224.69 Aligned_cols=324 Identities=11% Similarity=0.042 Sum_probs=216.3
Q ss_pred cccccCCCCCccccccCC-CcccccCCCcccEEEeccccC---cEEEEEECCCCCEEEEeeCC---------CcEEEEEe
Q 042434 185 IDSCQYHNSSVAISLYED-HCCGRDQIPTETVQILTEHKN---EVWFVQFSNNGEYLASSSSD---------CSAIIWKV 251 (517)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~h~~---~v~~~~~s~~~~~l~t~~~d---------g~i~iw~~ 251 (517)
...+.+.++...+....+ ....|+....+....+.+|.. .|.+++|||||++|++++.+ +.+.+||+
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~ 98 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKI 98 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEEC
Confidence 344455555442222233 344566666677777877775 49999999999999999764 78889999
Q ss_pred cCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCce------------------E
Q 042434 252 LEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIV------------------S 313 (517)
Q Consensus 252 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v------------------~ 313 (517)
.++.. ..+....+|...+.+++|||||+.|++++. +.|++||+.+++.......+...+ .
T Consensus 99 ~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~ 176 (723)
T 1xfd_A 99 PHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI 176 (723)
T ss_dssp SSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred CCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcc
Confidence 86643 222223345556899999999999999876 799999999988777665544333 7
Q ss_pred EEEEeCCCCeEEEeeCCC--------------------------------ceeEEEEeCCCCee-EeeeCc-----CCCc
Q 042434 314 SCAWFPDSKRLVCGSSDT--------------------------------EKGIFMCDCDGNEI-KAWRGT-----RIPK 355 (517)
Q Consensus 314 ~i~~~~~~~~l~~~~~d~--------------------------------~v~i~~~~~~~~~~-~~~~~~-----~~~~ 355 (517)
+++|+|||+.|++++.++ ...+++||..+... ..+..+ +...
T Consensus 177 ~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~ 256 (723)
T 1xfd_A 177 AHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY 256 (723)
T ss_dssp EEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred eEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccce
Confidence 899999999999987553 22589999886653 444332 1347
Q ss_pred eEEEEEccCCCEEEEEeC----CCcEEEEECCCceEEe-e--ccCCCe----eEEEEcCCCCEEEEE--eCCC------e
Q 042434 356 VLDLAVTPDGENLISVLS----DKDIRILNLGTYAERV-I--SEEHPI----TSLSVSVDCKNFIVN--LNSQ------E 416 (517)
Q Consensus 356 i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~-~--~~~~~i----~~~~~s~~~~~l~~~--~~d~------~ 416 (517)
+..++|+|||+.+++... +..|++||+.+++... . .+...+ ..++|+|||+.++.. ..++ .
T Consensus 257 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 336 (723)
T 1xfd_A 257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH 336 (723)
T ss_dssp EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred eEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE
Confidence 889999999998876653 3579999998877222 1 222333 378999999987754 4566 5
Q ss_pred EEEEE-cCCCCc--cceEEeCcccCceEEEeecCCCCCcEEEEecCC---CcEEEEecCCCc--eeEEecC---CCCCee
Q 042434 417 IHMWD-VAGKWE--KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN---SQIYIWNRRNSK--PIEILSG---HSMTVN 485 (517)
Q Consensus 417 i~~~d-~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~--~~~~~~~---h~~~v~ 485 (517)
|.+|| ..++ . ....+...... ......|+|||+.|+..+.+ +.+++|++.... ....+.. |...+.
T Consensus 337 l~~~d~~~~~-~~~~~~~l~~~~~~--~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 413 (723)
T 1xfd_A 337 ITVSSSQPNS-SNDNIQSITSGDWD--VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYF 413 (723)
T ss_dssp EEEECSSCCS-SSCCCCBSCCSSSC--EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCC
T ss_pred EEEEeccCCC-CccceeEeecCCeE--EEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeE
Confidence 67777 3333 2 02333322111 22334579999998766554 789999876432 3444443 677789
Q ss_pred EEEecCCCCcEEEEeeCCC--cEEEeCCCC
Q 042434 486 CVSWNPKRPKMLASASDDH--TIRIWGPCQ 513 (517)
Q Consensus 486 ~v~~~~~~~~~l~s~~~dg--~v~iw~~~~ 513 (517)
.++|+|++..++++++..+ ...+++..+
T Consensus 414 ~~~~spdg~~l~~~~~~~~~p~~~~~~~~~ 443 (723)
T 1xfd_A 414 SASFSHSMDFFLLKCEGPGVPMVTVHNTTD 443 (723)
T ss_dssp EEEECTTSSEEEEECCSSSSCCEEEEETTT
T ss_pred EEEECCCCCEEEEEccCCCCCeEEEEECCC
Confidence 9999999955555555444 233444433
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=9e-25 Score=228.50 Aligned_cols=280 Identities=15% Similarity=0.138 Sum_probs=197.2
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC---CEEEEEECCCCCeEEEEeCC---------CeE
Q 042434 224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN---PVSFVAWSPDDTKLLTCGNA---------EVL 291 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~l~s~~~d---------g~i 291 (517)
.+.+++|+|||+++++ +.||+|++||..++.. ...+..|.. .|.+++|||||++|++++.+ +.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~---~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS---TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC---EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcE---EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 4567899999998776 7899999999987643 344555654 49999999999999998764 788
Q ss_pred EEEECCCCcEEEEeC---CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCC--------------
Q 042434 292 KLWDVETGICKHTFG---DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP-------------- 354 (517)
Q Consensus 292 ~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~-------------- 354 (517)
.+||+.+++. ..+. .+...+.+++|+|||+.|++++. +. |++|+..+.........+..
T Consensus 94 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~--i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e 169 (723)
T 1xfd_A 94 VLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NN--IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE 169 (723)
T ss_dssp EEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TE--EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred EEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-Ce--EEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence 8999999876 3333 34445889999999999999887 44 99999887555444333222
Q ss_pred ----ceEEEEEccCCCEEEEEeCCC----------------------------------cEEEEECCCceE-Eeec-c--
Q 042434 355 ----KVLDLAVTPDGENLISVLSDK----------------------------------DIRILNLGTYAE-RVIS-E-- 392 (517)
Q Consensus 355 ----~i~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~-~~~~-~-- 392 (517)
.+.+++|+|||+.|++++.++ .|++||+.++.. .... +
T Consensus 170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~ 249 (723)
T 1xfd_A 170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD 249 (723)
T ss_dssp TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc
Confidence 237899999999999887553 799999988762 2222 2
Q ss_pred ----CCCeeEEEEcCCCCEEEEEeC----CCeEEEEEcCCCCccceEEeCcc-cCceE-EEeecCCCCCcEEEE--ecCC
Q 042434 393 ----EHPITSLSVSVDCKNFIVNLN----SQEIHMWDVAGKWEKPFKYTGHS-QNKYV-IRSCFGGLDGTFIAS--GSEN 460 (517)
Q Consensus 393 ----~~~i~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~-~~~~~-i~~~~~s~~~~~l~~--~~~d 460 (517)
...+..++|+|||+.+++... +..|++||+.++ .....+..+. ..... .....|+|||+.|+. +..+
T Consensus 250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 328 (723)
T 1xfd_A 250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG-VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ 328 (723)
T ss_dssp GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC-CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC-cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence 456889999999998877653 357999999876 3333332221 11110 024556999997765 4456
Q ss_pred C------cEEEEe-cCCCc--eeEEecCCCCCeeE-EEecCCCCcEEEEee-CC--CcEEEeCCCC
Q 042434 461 S------QIYIWN-RRNSK--PIEILSGHSMTVNC-VSWNPKRPKMLASAS-DD--HTIRIWGPCQ 513 (517)
Q Consensus 461 g------~i~iwd-~~~~~--~~~~~~~h~~~v~~-v~~~~~~~~~l~s~~-~d--g~v~iw~~~~ 513 (517)
+ .|++|| ..++. +...+..+...+.. ++|+|++ ..|+..+ .+ +.+++|++..
T Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~~~ 393 (723)
T 1xfd_A 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKG-NKIYFLSTEDLPRRRQLYSANT 393 (723)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTT-TEEEEEESSSCTTCCEEEEECS
T ss_pred CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCC-CEEEEEEcCCCCcceEEEEEeC
Confidence 6 577788 34444 15555544445554 6999999 5665444 44 7899998864
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=1.2e-22 Score=193.23 Aligned_cols=269 Identities=9% Similarity=0.038 Sum_probs=201.0
Q ss_pred ccCcEEEEEECCCCCEEEEeeC-------CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEE-EeCCCeEE
Q 042434 221 HKNEVWFVQFSNNGEYLASSSS-------DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLT-CGNAEVLK 292 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~-------dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~i~ 292 (517)
....+..++|+|+|+++++++. ++.|.+||..++... ..+.. ...+..++|+|+++++++ ...++.|.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT---QAIHN-DLKPFGATINNTTQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE---EEEEE-SSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE---EEEec-CCCcceEEECCCCCEEEEEecCCCEEE
Confidence 4567889999999998888774 568999999766433 33332 344788999999986654 45579999
Q ss_pred EEECCCCcEEEEeCCCCC---------ceEEEEEeCCCCeEEEeeC--CCceeEEEEeCCCCeeEeeeCcCCCceEEEEE
Q 042434 293 LWDVETGICKHTFGDHGF---------IVSSCAWFPDSKRLVCGSS--DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAV 361 (517)
Q Consensus 293 iwd~~~~~~~~~~~~~~~---------~v~~i~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 361 (517)
+||..+++.+..+..+.. .+.+++|+|+++.+++++. ++. |+.||..+.............+.+++|
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESV--IWVVDGGNIKLKTAIQNTGKMSTGLAL 192 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCE--EEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCce--EEEEcCCCCceEEEecCCCCccceEEE
Confidence 999999998887765432 2788999999998888763 566 999999876654443323335788999
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCceEE-eec-----cCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCccceEEeC
Q 042434 362 TPDGENLISVLSDKDIRILNLGTYAER-VIS-----EEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGKWEKPFKYTG 434 (517)
Q Consensus 362 ~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~-----~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~ 434 (517)
+|+++.+++++.++.|.+||..+++.. ... +...+..++|+|++++++++.. ++.|.+||+.++ .....+..
T Consensus 193 s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~ 271 (353)
T 3vgz_A 193 DSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG-NILAKVAA 271 (353)
T ss_dssp ETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC-CEEEEEEC
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEEc
Confidence 999999999999999999999988722 221 3445778999999998777765 589999999776 44444443
Q ss_pred cccCceEEEeecCCCCCcEEEEec-CCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC
Q 042434 435 HSQNKYVIRSCFGGLDGTFIASGS-ENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD 502 (517)
Q Consensus 435 ~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~ 502 (517)
... ..+.++|+|+++++++ .++.|.+||..+++.+..+..+ ..+.+++|+|++..++++...
T Consensus 272 ~~~-----~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 272 PES-----LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp SSC-----CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred CCC-----ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 222 2344589998665554 6899999999999998888754 478999999999434444443
No 141
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=9.7e-24 Score=199.20 Aligned_cols=266 Identities=11% Similarity=0.030 Sum_probs=194.2
Q ss_pred CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCC-C-CEEEEEECCCCCeEE-EEeCCCeEEEEECCCCcEEEEeCCC---
Q 042434 235 EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-N-PVSFVAWSPDDTKLL-TCGNAEVLKLWDVETGICKHTFGDH--- 308 (517)
Q Consensus 235 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~-~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~--- 308 (517)
+++++++.++.|.+||..++. ....+.... . .+..++|+|+++.++ +++.++.|.+||+.+++.+..+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMA---VDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE---EEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCc---EEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence 578999999999999997653 334443222 2 478899999998765 5556789999999999988766432
Q ss_pred --CCceEEEEEeCCCCeEEEee------------CCCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccCCCEEEEEeC
Q 042434 309 --GFIVSSCAWFPDSKRLVCGS------------SDTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPDGENLISVLS 373 (517)
Q Consensus 309 --~~~v~~i~~~~~~~~l~~~~------------~d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~ 373 (517)
...+.+++|+|+++++++++ .++. |++||..+.... .+... ..+.+++|+|++++++++
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~--i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~-- 152 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR--VALYDAETLSRRKAFEAP--RQITMLAWARDGSKLYGL-- 152 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE--EEEEETTTTEEEEEEECC--SSCCCEEECTTSSCEEEE--
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCce--EEEEECCCCcEEEEEeCC--CCcceeEECCCCCEEEEe--
Confidence 12567899999999998886 4566 889998865543 33332 357889999999988887
Q ss_pred CCcEEEEECCCceEE-eeccCCCeeEEEEcCCCCEEEEEeCCC------------------------eEEEEEcCCCCcc
Q 042434 374 DKDIRILNLGTYAER-VISEEHPITSLSVSVDCKNFIVNLNSQ------------------------EIHMWDVAGKWEK 428 (517)
Q Consensus 374 dg~i~i~d~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~------------------------~i~~~d~~~~~~~ 428 (517)
++.|.+||+.+++.. ..........+.|+|+++.+++....+ .|.+||+.++...
T Consensus 153 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 232 (337)
T 1pby_B 153 GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence 688999999988732 222222122347899988776554332 4689999876333
Q ss_pred ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434 429 PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRI 508 (517)
Q Consensus 429 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i 508 (517)
...+..+.. .+..+.++|+|++++++ ++.|++||+.+++.+..+.. ...+.+++|+|++ ..+++++.|+.|++
T Consensus 233 ~~~~~~~~~---~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~~~i~v 305 (337)
T 1pby_B 233 MREVRIMDV---FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDG-STVWLGGALGDLAA 305 (337)
T ss_dssp EEEEEECSS---CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTS-CEEEEESBSSEEEE
T ss_pred EeecCCCCC---ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCC-CEEEEEcCCCcEEE
Confidence 222222222 23345669999999988 79999999999998888764 3567899999999 67777888999999
Q ss_pred eCCCCCCC
Q 042434 509 WGPCQSSE 516 (517)
Q Consensus 509 w~~~~~~~ 516 (517)
||+.+++.
T Consensus 306 ~d~~~~~~ 313 (337)
T 1pby_B 306 YDAETLEK 313 (337)
T ss_dssp EETTTCCE
T ss_pred EECcCCcE
Confidence 99988763
No 142
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=2.2e-22 Score=190.88 Aligned_cols=271 Identities=11% Similarity=0.065 Sum_probs=181.7
Q ss_pred CCCcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC---CCeEEEEECCCCc--EEEEeCCCCCceEEE
Q 042434 242 SDCSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN---AEVLKLWDVETGI--CKHTFGDHGFIVSSC 315 (517)
Q Consensus 242 ~dg~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~--~~~~~~~~~~~v~~i 315 (517)
.++.|.+|+++.. ....... ...+...+..++|+|||+ |++++. ++.|.+|++.+++ .+..+..+...+..+
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~-~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDG-LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEE-EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCCCEEEEEEcCCCCeEEEee-eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 3567889988643 2333323 234456778899999999 655544 6899999998776 334444567778899
Q ss_pred EEeCCCCeEEEee-CCCceeEEEEeCCCCe--eEeeeCc--------CCCceEEEEEccCCCEEEEEeCCCcEEEEECC-
Q 042434 316 AWFPDSKRLVCGS-SDTEKGIFMCDCDGNE--IKAWRGT--------RIPKVLDLAVTPDGENLISVLSDKDIRILNLG- 383 (517)
Q Consensus 316 ~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~--~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~- 383 (517)
+|+|+|+++++++ .++.+.+|..+..+.. +...... ....+.+++|+|+|+.+++...++.|.+||+.
T Consensus 92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence 9999999988888 6778444444332322 2222211 11248889999999966666678899999998
Q ss_pred CceEE-----eeccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCC-cc--ceEEeCccc---CceEEEeecCCCCC
Q 042434 384 TYAER-----VISEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKW-EK--PFKYTGHSQ---NKYVIRSCFGGLDG 451 (517)
Q Consensus 384 ~~~~~-----~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~-~~--~~~~~~~~~---~~~~i~~~~~s~~~ 451 (517)
++... .......+..++|+|+|++++++ ..++.+.+|++.... .. ......... .......+.++|||
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG 251 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG 251 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence 44311 12234467889999999976664 568899999986421 11 112222111 11235566779999
Q ss_pred cEEE-EecCCCcEEEEecC---CCceeEEecCCCCCeeEEEecCCCCcEEEEee-CCCcEEEe--CCCCCC
Q 042434 452 TFIA-SGSENSQIYIWNRR---NSKPIEILSGHSMTVNCVSWNPKRPKMLASAS-DDHTIRIW--GPCQSS 515 (517)
Q Consensus 452 ~~l~-~~~~dg~i~iwd~~---~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~v~iw--~~~~~~ 515 (517)
++|+ +...++.|.+|++. ..+.+..+..+...+.+++|+|++ ++|++++ .++.|.+| |..+++
T Consensus 252 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 252 HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE-AFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS-SEEEEEETTTTEEEEEEECTTTCC
T ss_pred CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC-CEEEEEEcCCCcEEEEEEeCCCCe
Confidence 9874 55568999999987 235666677777778999999999 5666655 55899999 555554
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=2.5e-23 Score=225.53 Aligned_cols=284 Identities=13% Similarity=0.020 Sum_probs=223.0
Q ss_pred ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEE
Q 042434 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLK 292 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 292 (517)
.....+.+|.+.+.++.|+++ .++++++.|+.+.||.+..... ....+..|. .+...+|+|||+.|+++ .++.|.
T Consensus 194 ~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~--~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~ 268 (1045)
T 1k32_A 194 GAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK--DLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIY 268 (1045)
T ss_dssp TEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC--SCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEE
T ss_pred CCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC--cceEecCCC-CcceeeEcCCCCEEEEE-eCCEEE
Confidence 344556899999999999998 6777888899999998864221 123445554 46677999999999987 488999
Q ss_pred EEECCCCcEEEEeCC-----------CCCceEEEEEe-CCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEE
Q 042434 293 LWDVETGICKHTFGD-----------HGFIVSSCAWF-PDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLA 360 (517)
Q Consensus 293 iwd~~~~~~~~~~~~-----------~~~~v~~i~~~-~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~ 360 (517)
+||+.... +..+.. |...+.+++|+ |||+.+++++ ++. ++.|+..+........+....+..++
T Consensus 269 ~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (1045)
T 1k32_A 269 IFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQ--AFIQDVSGTYVLKVPEPLRIRYVRRG 344 (1045)
T ss_dssp EECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTE--EEEECTTSSBEEECSCCSCEEEEEEC
T ss_pred EecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCE--EEEEcCCCCceEEccCCCcceEEeee
Confidence 99995544 335544 23468999999 9999999988 555 89999887666655444432789999
Q ss_pred EccCCCEEEEEeCCCcEE-EEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC
Q 042434 361 VTPDGENLISVLSDKDIR-ILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN 438 (517)
Q Consensus 361 ~~~~~~~l~~~~~dg~i~-i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 438 (517)
|+ +|+.++.++.++.+. +||+.+.. .....+...+..++|+|+|+++++++.++.|++||+.++ .......++...
T Consensus 345 ~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-~~~~~~~~~~~~ 422 (1045)
T 1k32_A 345 GD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSREAM 422 (1045)
T ss_dssp SS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECSSSC
T ss_pred Ec-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC-ceEEeccCCCCC
Confidence 99 999999998888888 99998776 333355678999999999999999999999999999876 444444455443
Q ss_pred ceEEEeecCCCCCcEEEEecCCC----------cEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434 439 KYVIRSCFGGLDGTFIASGSENS----------QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRI 508 (517)
Q Consensus 439 ~~~i~~~~~s~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i 508 (517)
+..+.|+|||++|++++.++ .|++||+.+++ +..+..|...+.+++|+|+| ..|++++.++...+
T Consensus 423 ---v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG-~~l~~~s~~~~~~~ 497 (1045)
T 1k32_A 423 ---ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADS-KNLYYLSYRSLDPS 497 (1045)
T ss_dssp ---CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTS-CEEEEEESCCCCCE
T ss_pred ---ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCC-CEEEEEecccCCcC
Confidence 34556699999999887654 89999999887 67778888889999999999 68888998888888
Q ss_pred eCCC
Q 042434 509 WGPC 512 (517)
Q Consensus 509 w~~~ 512 (517)
|+..
T Consensus 498 ~~~~ 501 (1045)
T 1k32_A 498 PDRV 501 (1045)
T ss_dssp ECSS
T ss_pred cchh
Confidence 8754
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=3.4e-23 Score=215.90 Aligned_cols=280 Identities=12% Similarity=0.064 Sum_probs=196.0
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEecCCCee-eEEEEecc--------------CCCCEEEEEECCCCCeEEEEeCCC
Q 042434 225 VWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKL-TLKHTLRS--------------HQNPVSFVAWSPDDTKLLTCGNAE 289 (517)
Q Consensus 225 v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~-~~~~~~~~--------------h~~~v~~l~~s~~~~~l~s~~~dg 289 (517)
+..+.|+ |+.+++++.|+ | +||+.++... ........ +...|.+++|+|| ..++.+ .++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence 3346777 66677777788 8 9999877541 22211110 1156999999999 666655 459
Q ss_pred eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-----CeeEeeeCcCCCc---------
Q 042434 290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-----NEIKAWRGTRIPK--------- 355 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-----~~~~~~~~~~~~~--------- 355 (517)
.|++||+.+++..... .+...+.+++|+|||+.|+++ .++. |++|+..+ .............
T Consensus 102 ~i~~~d~~~~~~~~l~-~~~~~~~~~~~SpdG~~la~~-~~~~--i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 177 (706)
T 2z3z_A 102 GLVGFDMLARKVTYLF-DTNEETASLDFSPVGDRVAYV-RNHN--LYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ 177 (706)
T ss_dssp EEEEEETTTTEEEEEE-CCTTCCTTCEECTTSSEEEEE-ETTE--EEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred EEEEEECCCCceEEcc-CCcccccCCcCCCCCCEEEEE-ECCe--EEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence 9999999988765544 566778899999999999985 5677 89999876 5544433322222
Q ss_pred -----eEEEEEccCCCEEEEEe---------------------------------CCCcEEEEECCCceEEee----ccC
Q 042434 356 -----VLDLAVTPDGENLISVL---------------------------------SDKDIRILNLGTYAERVI----SEE 393 (517)
Q Consensus 356 -----i~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~----~~~ 393 (517)
+.++.|+|||++|++++ .+..|++||+.++..... .+.
T Consensus 178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 257 (706)
T 2z3z_A 178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE 257 (706)
T ss_dssp GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Confidence 47899999999999987 446799999998873322 244
Q ss_pred CCeeEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCCccceEEeCcccCc--eEEEeecCCC--CCcEEEEecCCCcEE
Q 042434 394 HPITSLSVSVDCKNFIVNLNSQ-----EIHMWDVAGKWEKPFKYTGHSQNK--YVIRSCFGGL--DGTFIASGSENSQIY 464 (517)
Q Consensus 394 ~~i~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~--~~i~~~~~s~--~~~~l~~~~~dg~i~ 464 (517)
..+..++|+|||+.+++++.++ .|.+||+.++. ....+....... ..+..+.|+| ||+++++++.||.++
T Consensus 258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~ 336 (706)
T 2z3z_A 258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR-FVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH 336 (706)
T ss_dssp CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-EEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-eeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence 5689999999999999987765 89999998762 222222111111 1123456689 999999999999999
Q ss_pred EEecC-CCceeEEecCCCCCeeE-EEecCCCCcEEEEeeCCC----cEEEeCCCCCC
Q 042434 465 IWNRR-NSKPIEILSGHSMTVNC-VSWNPKRPKMLASASDDH----TIRIWGPCQSS 515 (517)
Q Consensus 465 iwd~~-~~~~~~~~~~h~~~v~~-v~~~~~~~~~l~s~~~dg----~v~iw~~~~~~ 515 (517)
+|++. ++..+..+..|...+.+ ++|+|++..++++++.++ .|..|++.+++
T Consensus 337 l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred EEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 99876 67778888888888887 799999954555666655 67777776653
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=3.3e-22 Score=189.12 Aligned_cols=266 Identities=11% Similarity=0.073 Sum_probs=185.4
Q ss_pred ccccCcEEEEEECCCCCEEEEeeCC-CcEEEEEecC-CCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC-CCeEEEEE
Q 042434 219 TEHKNEVWFVQFSNNGEYLASSSSD-CSAIIWKVLE-DSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN-AEVLKLWD 295 (517)
Q Consensus 219 ~~h~~~v~~~~~s~~~~~l~t~~~d-g~i~iw~~~~-~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd 295 (517)
..|...+.+++|+|+|++|++++.+ +.|.+|++.. .........+..+. .+.+++|+|+++++++++. ++.|.+||
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 3578889999999999999988876 9999999972 22334445555444 7899999999998877665 88999999
Q ss_pred CC---CCcEEEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCC-CeeE-----eeeCcCCCceEEEEEccCC
Q 042434 296 VE---TGICKHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDG-NEIK-----AWRGTRIPKVLDLAVTPDG 365 (517)
Q Consensus 296 ~~---~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~-~~~~-----~~~~~~~~~i~~~~~~~~~ 365 (517)
+. +++....+.. ...+.+++|+|+++++++++ .++. +++|+... ..+. .........+..++|+|++
T Consensus 113 ~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~--v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg 189 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDR--ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 189 (343)
T ss_dssp EETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTE--EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred CCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCE--EEEEEecCCCceeeecccccccCCCCCcceEEECCCC
Confidence 94 3445555543 34588999999999888887 7888 66777654 3332 2233333468889999999
Q ss_pred CEEEEEe-CCCcEEEEECCC--ceE----Eee--cc----CCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCC--C-Ccc
Q 042434 366 ENLISVL-SDKDIRILNLGT--YAE----RVI--SE----EHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAG--K-WEK 428 (517)
Q Consensus 366 ~~l~~~~-~dg~i~i~d~~~--~~~----~~~--~~----~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~--~-~~~ 428 (517)
+++++++ .++.|.+||+.. +.. ... .. ...+..++|+|++++++++. .++.|.+||+.. + ...
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~ 269 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK 269 (343)
T ss_dssp SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence 9776555 789999999954 321 111 11 23466899999999887554 689999999973 2 122
Q ss_pred ceEEeCcccCceEEEeecCCCCCcEEEEec-CCCcEEEEe--cCCCc--eeEEecCCCCCeeEEEecCCC
Q 042434 429 PFKYTGHSQNKYVIRSCFGGLDGTFIASGS-ENSQIYIWN--RRNSK--PIEILSGHSMTVNCVSWNPKR 493 (517)
Q Consensus 429 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd--~~~~~--~~~~~~~h~~~v~~v~~~~~~ 493 (517)
...+..+.. +..+.++|+|++|++++ .++.|.+|+ ..+++ .+..+.. .....+++|.|+.
T Consensus 270 ~~~~~~~~~----~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 270 EGFQPTETQ----PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHE 334 (343)
T ss_dssp EEEEECSSS----CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC
T ss_pred eeeecCCCc----cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEccc
Confidence 222222221 44556699999888877 679999994 44664 3444443 2456677887654
No 146
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.92 E-value=4.9e-23 Score=209.53 Aligned_cols=272 Identities=14% Similarity=0.037 Sum_probs=196.0
Q ss_pred ccCcEEEEEECCCCCEEEEeeC-CCcEEEEEecCCCeeeEEEEeccCC-CCEEEEEECCCCCeEEEEeC---CCeEEEEE
Q 042434 221 HKNEVWFVQFSNNGEYLASSSS-DCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFVAWSPDDTKLLTCGN---AEVLKLWD 295 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~---dg~i~iwd 295 (517)
+..+|++++|+|||++||+++. ||+++||++..+ . . ..+..|. ..+.+++|+|| +.+++++. +....+|.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-~--~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-E--T-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT-E--E-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCC-C--c-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence 3567999999999999999887 999999998544 2 2 3455555 68999999999 77777665 45556654
Q ss_pred CCC---CcEEEEeCCCCCceEEEEEeCCCCe-EEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434 296 VET---GICKHTFGDHGFIVSSCAWFPDSKR-LVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV 371 (517)
Q Consensus 296 ~~~---~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 371 (517)
+.. +... .+.... .+...+|+|+++. +++++.++. +.+|+..+.....+..... .+++|+|||+.++++
T Consensus 95 ~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~--~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 95 VNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDR--VALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSC--EEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCC--ceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 432 3333 343222 3446788888864 333334444 4477887766655554442 789999999999988
Q ss_pred eCC----CcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCccceEEeCcccCce----
Q 042434 372 LSD----KDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQ--EIHMWDVAGKWEKPFKYTGHSQNKY---- 440 (517)
Q Consensus 372 ~~d----g~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~---- 440 (517)
+.+ +.|++||+.++. .....+...+..++|+|||+.++++..++ .|++||+.++... .+.++.....
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~ 245 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--DLELPSKDFSSYRP 245 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCC
T ss_pred EEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--EccCCCcChhhhhh
Confidence 877 789999998877 55556677889999999999999888888 8999999876333 4444432211
Q ss_pred -EEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCC---cEEEeCCCC
Q 042434 441 -VIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDH---TIRIWGPCQ 513 (517)
Q Consensus 441 -~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg---~v~iw~~~~ 513 (517)
......|+|||.++++++.||.+++|++ |+... .+.+.|.+++|+ ++ .++++++.+. .+.+|+..+
T Consensus 246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg-~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 246 TAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RG-KLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp SEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCC
T ss_pred ccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CC-EEEEEEcCCCCCCeEEEEcCCC
Confidence 1111226999999999999999999999 76554 345778999999 88 7888888774 477777653
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.1e-21 Score=184.66 Aligned_cols=287 Identities=11% Similarity=0.061 Sum_probs=193.6
Q ss_pred CCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeC-CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCC
Q 042434 202 DHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSS-DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDT 280 (517)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 280 (517)
+....++....+....+..+...+ +++|+|+|+++++++. ++.|.+||..++.. ....+..+..+..+++|+|+++
T Consensus 20 ~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~s~dg~ 96 (331)
T 3u4y_A 20 RRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP--KVVAIQEGQSSMADVDITPDDQ 96 (331)
T ss_dssp TEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--EEEEEEECSSCCCCEEECTTSS
T ss_pred CeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--eEEecccCCCCccceEECCCCC
Confidence 344556666677777777777777 9999999997776665 88999999976643 1345555666666699999999
Q ss_pred eEEEEeCCC---eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEee-CCCc-eeEEEEeCCCCeeEe--eeCcCC
Q 042434 281 KLLTCGNAE---VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTE-KGIFMCDCDGNEIKA--WRGTRI 353 (517)
Q Consensus 281 ~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~-v~i~~~~~~~~~~~~--~~~~~~ 353 (517)
+++++..++ .|.+||+.+++.+..+.. ...+.+++|+|+|+++++++ .++. +.+|.++..+..... ......
T Consensus 97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 175 (331)
T 3u4y_A 97 FAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG 175 (331)
T ss_dssp EEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS
T ss_pred EEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC
Confidence 999655553 899999999998887754 44568999999998666654 4466 666666644433211 111222
Q ss_pred CceEEEEEccCCCEEEEEe-CCCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCc
Q 042434 354 PKVLDLAVTPDGENLISVL-SDKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWE 427 (517)
Q Consensus 354 ~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~ 427 (517)
.....++|+|+|+++++++ .++.|.+||+.+++ .........+..++|+|+|++++++. .++.|.+||+.++..
T Consensus 176 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 176 TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 3578999999999665554 68899999998765 33444556788999999999877665 477899999977522
Q ss_pred c-ceEEeCc----ccCceEEEeecCCCCCcEEEEec-CCCcEEEEecCCCceeEEecCCCCCeeEEEecCCC
Q 042434 428 K-PFKYTGH----SQNKYVIRSCFGGLDGTFIASGS-ENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR 493 (517)
Q Consensus 428 ~-~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~ 493 (517)
. ...+... .........+.++|||++|++++ .++.|.+||+.... +..+.+....-....++|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~-~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 256 SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV-VGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE-EEECTTCCCBSCEEECCCC-
T ss_pred eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc-ccceecccccCCeEEECCcc
Confidence 1 2222211 11111112346699999886555 46799999997654 33444443333334455554
No 148
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.91 E-value=1.6e-22 Score=194.91 Aligned_cols=300 Identities=14% Similarity=0.047 Sum_probs=205.6
Q ss_pred cCCCcccEEEeccccCcEEE-----EEECCCCCEEEEeeC-CCc--EEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC
Q 042434 208 DQIPTETVQILTEHKNEVWF-----VQFSNNGEYLASSSS-DCS--AIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD 279 (517)
Q Consensus 208 ~~~~~~~~~~l~~h~~~v~~-----~~~s~~~~~l~t~~~-dg~--i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 279 (517)
+......+..+..|...... .+|||||++|++++. +|. |.+||+.++ .......++...+..+.|+|||
T Consensus 16 ~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g---~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 16 DASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ---VATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC---EEEECCCSSCBCSSSCEECTTS
T ss_pred cCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC---ceEEeeeCCCCCccceEEcCCC
Confidence 44456678888888887777 899999999999887 674 777787654 3334444555555577899999
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEE--EeCCCCeEEEee--------------------CCCceeEEE
Q 042434 280 TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCA--WFPDSKRLVCGS--------------------SDTEKGIFM 337 (517)
Q Consensus 280 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~--~~~~~~~l~~~~--------------------~d~~v~i~~ 337 (517)
+.|+.++.++.|++||+.+++....+..+...+.... ++|+++.++... .+....|+.
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 9999999999999999999988777766666554444 489999887532 122245999
Q ss_pred EeCCCCeeEeeeCcCCCceEEEEEcc-CCCEEEEEeCC------CcEEEEECCCceE-EeeccC--CCeeEEEEcCCCCE
Q 042434 338 CDCDGNEIKAWRGTRIPKVLDLAVTP-DGENLISVLSD------KDIRILNLGTYAE-RVISEE--HPITSLSVSVDCKN 407 (517)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~-~~~~~~--~~i~~~~~s~~~~~ 407 (517)
||..+.....+.... ..+..+.|+| +|+.++.+..+ ..|.++|..+... ....+. ..+..+.|+|||+.
T Consensus 173 ~d~~~g~~~~l~~~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (388)
T 3pe7_A 173 VDLKTGESTVILQEN-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSA 251 (388)
T ss_dssp EETTTCCEEEEEEES-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSC
T ss_pred EECCCCceEEeecCC-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCE
Confidence 999877666555443 3688999999 99988877653 3788889877653 333333 24778899999998
Q ss_pred EEEEeC-CC----eEEEEEcCCCCcc-ceEEeCcccCceEEEeecCCCCCcEEEEe---------cCCCcEEEEecCCCc
Q 042434 408 FIVNLN-SQ----EIHMWDVAGKWEK-PFKYTGHSQNKYVIRSCFGGLDGTFIASG---------SENSQIYIWNRRNSK 472 (517)
Q Consensus 408 l~~~~~-d~----~i~~~d~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---------~~dg~i~iwd~~~~~ 472 (517)
|+..+. ++ .|++||+.++... +..+.++...........|+|||+.|+.. ..+..|++||+.+++
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 252 LVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp EEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred EEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 766543 22 3999999876322 12222211000000112358999988754 456689999999876
Q ss_pred eeEEecCCCC-----------CeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 473 PIEILSGHSM-----------TVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 473 ~~~~~~~h~~-----------~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
. ..+..|.. .+.+++|+|+|..+++++..+|...+|.++
T Consensus 332 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 332 Q-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp E-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred e-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 5 34544555 578899999995455555567877777654
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=2.9e-22 Score=185.18 Aligned_cols=242 Identities=16% Similarity=0.112 Sum_probs=177.4
Q ss_pred CCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecC-CCeeeEEEEeccC-CCCEEEEEECCCCCeEEEEeC
Q 042434 210 IPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLE-DSKLTLKHTLRSH-QNPVSFVAWSPDDTKLLTCGN 287 (517)
Q Consensus 210 ~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~ 287 (517)
........+..|.+.|.+++|+|+|++|++++ ++.|++||+.+ +.. ......| ...+.+++|+|++++|++++.
T Consensus 29 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 104 (297)
T 2ojh_A 29 IRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP---EKVDTGFATICNNDHGISPDGALYAISDK 104 (297)
T ss_dssp TTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC---EECCCTTCCCBCSCCEECTTSSEEEEEEC
T ss_pred CCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc---eEeccccccccccceEECCCCCEEEEEEe
Confidence 33444556777999999999999999999986 78999999976 432 2333444 477899999999999999983
Q ss_pred --CC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEE-EeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEc
Q 042434 288 --AE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLV-CGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVT 362 (517)
Q Consensus 288 --dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 362 (517)
++ .|.+|+..++.. ..+..+ ..+.+++|+|+++.++ +++.++.+.+|.++..+.....+..+. ..+.+++|+
T Consensus 105 ~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~s 181 (297)
T 2ojh_A 105 VEFGKSAIYLLPSTGGTP-RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE-GRNDGPDYS 181 (297)
T ss_dssp TTTSSCEEEEEETTCCCC-EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS-SCEEEEEEC
T ss_pred CCCCcceEEEEECCCCce-EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC-CccccceEC
Confidence 34 455555555553 344333 3488999999999887 677889877888888776665554433 478999999
Q ss_pred cCCCEEEEEe-CCCcEEEEECC--Cce-EEeeccCCCeeEEEEcCCCCEEEEEeCC-----------CeEEEEEcCCCCc
Q 042434 363 PDGENLISVL-SDKDIRILNLG--TYA-ERVISEEHPITSLSVSVDCKNFIVNLNS-----------QEIHMWDVAGKWE 427 (517)
Q Consensus 363 ~~~~~l~~~~-~dg~i~i~d~~--~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----------~~i~~~d~~~~~~ 427 (517)
|+++.+++++ .++.+.+|++. ... .....+...+..++|+|+++++++++.+ +.|.+||+.++..
T Consensus 182 ~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 182 PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred CCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 9999888766 58889999875 333 3444455678899999999999888765 5699999977522
Q ss_pred c-ceEEeCcccCceEEEeecCCCCCcEEEEecCCC
Q 042434 428 K-PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS 461 (517)
Q Consensus 428 ~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 461 (517)
. ...+.++... +..+.|+|+|++|++++.+.
T Consensus 262 ~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 262 ETLFDLFGGQGT---MNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEESTTT---SCSCCBCTTSSEEEEEEECC
T ss_pred eeeeccCCCCcc---cccceECCCCCEEEEEEecc
Confidence 2 2223344433 45567799999998887654
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=7.1e-22 Score=187.40 Aligned_cols=263 Identities=14% Similarity=0.114 Sum_probs=182.5
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCC-CCEEEEEECCCCCeEE-EEeCCCeEEEEECCCCcEEEE
Q 042434 227 FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFVAWSPDDTKLL-TCGNAEVLKLWDVETGICKHT 304 (517)
Q Consensus 227 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~ 304 (517)
.+++++++.++++++.++.|.+||..++ +....+..+. ..+..++|+|++++++ ++..++.|.+||+.+++....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD---TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT---EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC---cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 4568889999999999999999999765 3334444332 2578999999998665 555789999999999988877
Q ss_pred eCCCC------CceEEEEEeCCCCeEEEeeCC------------CceeEEEEeCCCCe----eEeeeCcCCCceEEEEEc
Q 042434 305 FGDHG------FIVSSCAWFPDSKRLVCGSSD------------TEKGIFMCDCDGNE----IKAWRGTRIPKVLDLAVT 362 (517)
Q Consensus 305 ~~~~~------~~v~~i~~~~~~~~l~~~~~d------------~~v~i~~~~~~~~~----~~~~~~~~~~~i~~~~~~ 362 (517)
+.... ..+.+++|+|+|+++++++.+ +. +++||..+.. +...... ..+.+++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s 156 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR--LEVFSTADGLEAKPVRTFPMP--RQVYLMRAA 156 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCE--EEEEEGGGGGGBCCSEEEECC--SSCCCEEEC
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCe--EEEEECCCccccceeeeccCC--CcccceeEC
Confidence 65332 237889999999999998865 66 8889987522 2222222 258889999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCceE-EeeccCC-------------------------CeeEEEEcCCCCE---------
Q 042434 363 PDGENLISVLSDKDIRILNLGTYAE-RVISEEH-------------------------PITSLSVSVDCKN--------- 407 (517)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~-------------------------~i~~~~~s~~~~~--------- 407 (517)
|+|+ +++++ +.|.+||..+++. ....... ....+++++++..
T Consensus 157 ~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 157 DDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 233 (349)
T ss_dssp TTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred CCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccce
Confidence 9999 55554 3499999988762 2222111 2344566654421
Q ss_pred --EEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCCceeEEecCCCCCe
Q 042434 408 --FIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTV 484 (517)
Q Consensus 408 --l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v 484 (517)
+.....++.+.+|++. .... ....+.++| +|++++++ ++.|++||+.+++.+..+.. ...+
T Consensus 234 ~~~~~~~~~~~~~~~~~~----------~~~~---~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~ 297 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFA----------DLTE---LYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTY 297 (349)
T ss_dssp EEEEEETTTCCEEEEEEE----------ECSS---CEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCC
T ss_pred eEEEEeccCCcEEecccc----------cCCC---cceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCc
Confidence 1122233444444431 1111 233455689 99999988 88999999999998888764 3457
Q ss_pred eEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 485 NCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 485 ~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
.+++|+|++ ..|++++.++.|++||+.+++.
T Consensus 298 ~~~~~s~dg-~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 298 YCVAFDKKG-DKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp CEEEECSSS-SCEEEESBSSEEEEEETTTTEE
T ss_pred cceEECCCC-CEEEEecCCCeEEEEeccccce
Confidence 899999999 5666678889999999987653
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=2.6e-20 Score=177.60 Aligned_cols=264 Identities=11% Similarity=0.099 Sum_probs=180.9
Q ss_pred ccCcEEEEEECCCCCEEEEeeCC----CcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEe-CCCeEEEE
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSD----CSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG-NAEVLKLW 294 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~d----g~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iw 294 (517)
|...+..++|+|+|++|++++.+ +.|.+|++... .....+.....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 77888899999999999998876 79999999764 455555566556677888888 788777766 57899999
Q ss_pred ECCCCcEEEEe------CC--------CCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCC----e-e------Eee
Q 042434 295 DVETGICKHTF------GD--------HGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGN----E-I------KAW 348 (517)
Q Consensus 295 d~~~~~~~~~~------~~--------~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~----~-~------~~~ 348 (517)
++.....+... .+ +...+.+++|+|+|+++++++. ++.+.+|.++..+. . + ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 99754322111 11 1234588999999997766654 67744554454442 1 1 222
Q ss_pred eCcCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCCceEEe---e----ccCCCeeEEEEcCCCCEEEEEeCC--CeEE
Q 042434 349 RGTRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGTYAERV---I----SEEHPITSLSVSVDCKNFIVNLNS--QEIH 418 (517)
Q Consensus 349 ~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~---~----~~~~~i~~~~~s~~~~~l~~~~~d--~~i~ 418 (517)
.......+..++|+|+|+++++++ .++.|.+||+.++.... . .+......++|+|+|++++++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 333334678999999999887777 68999999998664211 1 122346799999999998777665 8999
Q ss_pred EEEcCC--CC-ccceEEeCcccCceEEEeecCCCCCcEEEEec-CCCcEEEE--ecCCCceeEEec-CCCCCeeEEEec
Q 042434 419 MWDVAG--KW-EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS-ENSQIYIW--NRRNSKPIEILS-GHSMTVNCVSWN 490 (517)
Q Consensus 419 ~~d~~~--~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~-~h~~~v~~v~~~ 490 (517)
+|++.. +. .....+.. .. ....+.++|+|++|++++ .++.|.+| |..++++..... .+...+.|++|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~---~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GI---HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SS---CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-CC---CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 999962 21 12222222 11 133455699999888887 67889996 555777655432 244678888886
No 152
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=5.8e-21 Score=181.45 Aligned_cols=243 Identities=11% Similarity=0.072 Sum_probs=183.6
Q ss_pred CCCEEEEEECCCCCeEEEEeC-------CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CCceeEEEE
Q 042434 267 QNPVSFVAWSPDDTKLLTCGN-------AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMC 338 (517)
Q Consensus 267 ~~~v~~l~~s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~ 338 (517)
...+..++|+|+++++++++. ++.|.+||..+++.+..+.. ...+.+++|+|+++.+++++. ++. ++.|
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~--v~~~ 116 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSA--VTAI 116 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTE--EEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCE--EEEE
Confidence 356789999999998888774 56899999999998887753 344778999999996665544 566 8999
Q ss_pred eCCCCee-EeeeCcCCC--------ceEEEEEccCCCEEEEEe--CCCcEEEEECCCce-EEeec-cCCCeeEEEEcCCC
Q 042434 339 DCDGNEI-KAWRGTRIP--------KVLDLAVTPDGENLISVL--SDKDIRILNLGTYA-ERVIS-EEHPITSLSVSVDC 405 (517)
Q Consensus 339 ~~~~~~~-~~~~~~~~~--------~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~-~~~~~-~~~~i~~~~~s~~~ 405 (517)
|..+... ..+..+... .+.+++|+|+++.+++++ .++.|.+||..+.+ ..... ....+..++|+|++
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 9875444 444433211 278899999999887776 47889999999887 33333 45568899999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccceEEeC-cccCceEEEeecCCCCCcEEEEecC-CCcEEEEecCCCceeEEecCCCCC
Q 042434 406 KNFIVNLNSQEIHMWDVAGKWEKPFKYTG-HSQNKYVIRSCFGGLDGTFIASGSE-NSQIYIWNRRNSKPIEILSGHSMT 483 (517)
Q Consensus 406 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~h~~~ 483 (517)
++++++..++.|.+||+.+. .....+.. ..........+.++|+|+++++++. ++.|++||..+++.+..+..+.
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-- 273 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-- 273 (353)
T ss_dssp TEEEEECTTSEEEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--
T ss_pred CEEEEEcCCCeEEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--
Confidence 99999999999999999876 44444433 1112223444566899997776665 4899999999999888887543
Q ss_pred eeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 484 VNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 484 v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
..+++|+|++..++++...++.|.+||+.+++
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 36799999995466666689999999998765
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=8.4e-20 Score=174.07 Aligned_cols=275 Identities=13% Similarity=0.118 Sum_probs=183.0
Q ss_pred CCCEEEEee----CCCcEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC----CeEEEEECCC--CcE
Q 042434 233 NGEYLASSS----SDCSAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA----EVLKLWDVET--GIC 301 (517)
Q Consensus 233 ~~~~l~t~~----~dg~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----g~i~iwd~~~--~~~ 301 (517)
...+++.|+ .++.|.+|+++.. ......... +...+..++|+||+++|++++.+ +.|.+|++.. ++.
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 334555653 4678999988642 333444444 67778889999999999998876 7999998865 443
Q ss_pred --EEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCC-CeeEee----e--C-------cCCCceEEEEEccC
Q 042434 302 --KHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDG-NEIKAW----R--G-------TRIPKVLDLAVTPD 364 (517)
Q Consensus 302 --~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~-~~~~~~----~--~-------~~~~~i~~~~~~~~ 364 (517)
+.....+......+++ +++++++++ .++. +.+|+... ..+... . . .....+.+++|+|+
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~--v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd 165 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGS--ITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD 165 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTE--EEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT
T ss_pred EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCE--EEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC
Confidence 3334345566777877 788777776 4677 66666642 111111 1 1 01224588999999
Q ss_pred CCEEEEEe-CCCcEEEEECCCce---------------EEeeccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCc
Q 042434 365 GENLISVL-SDKDIRILNLGTYA---------------ERVISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWE 427 (517)
Q Consensus 365 ~~~l~~~~-~dg~i~i~d~~~~~---------------~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~ 427 (517)
|+++++++ .++.|.+|++.... .........+..++|+|+|++++++. .++.|.+||+.++..
T Consensus 166 g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 166 GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence 99776655 47899999876432 12233455678999999999888777 589999999975411
Q ss_pred -cceEEeCcccCceEEEeecCCCCCcEEEEecCC--CcEEEEecC--CCc--eeEEecCCCCCeeEEEecCCCCcEEEEe
Q 042434 428 -KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN--SQIYIWNRR--NSK--PIEILSGHSMTVNCVSWNPKRPKMLASA 500 (517)
Q Consensus 428 -~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~i~iwd~~--~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~ 500 (517)
.................+.++|||++|++++.+ +.|.+|++. +++ .+..+.. ...+.+++|+|+| ++|+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg-~~l~~~ 323 (361)
T 3scy_A 246 DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNG-KYLLVA 323 (361)
T ss_dssp EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTS-CEEEEE
T ss_pred EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCC-CEEEEE
Confidence 122222222211223456679999998776654 899999985 454 4555554 5678899999999 566666
Q ss_pred e-CCCcEEEe--CCCCCC
Q 042434 501 S-DDHTIRIW--GPCQSS 515 (517)
Q Consensus 501 ~-~dg~v~iw--~~~~~~ 515 (517)
+ .++.|.+| |..+++
T Consensus 324 ~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 324 CRDTNVIQIFERDQATGL 341 (361)
T ss_dssp ETTTTEEEEEEECTTTCC
T ss_pred ECCCCCEEEEEEECCCCc
Confidence 5 78999996 444543
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=4.5e-20 Score=174.94 Aligned_cols=250 Identities=13% Similarity=0.134 Sum_probs=170.1
Q ss_pred eccccCcEEEEEECCCCCEEEEeeC---CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe-CCCeEEE
Q 042434 218 LTEHKNEVWFVQFSNNGEYLASSSS---DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG-NAEVLKL 293 (517)
Q Consensus 218 l~~h~~~v~~~~~s~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~i 293 (517)
...+...+..++|+|+|+ |++++. ++.|.+|++.++ ....+..+..+...+..++|+|||++|++++ .++.|.+
T Consensus 35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v 112 (347)
T 3hfq_A 35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ-TAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEV 112 (347)
T ss_dssp EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT-EEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEE
T ss_pred eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC-cEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEE
Confidence 345667788899999999 555544 689999999644 3445555566778889999999999988887 6789999
Q ss_pred EECC-CCc--EEEEeCC---------CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CCeeE---eeeCcCCCceE
Q 042434 294 WDVE-TGI--CKHTFGD---------HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GNEIK---AWRGTRIPKVL 357 (517)
Q Consensus 294 wd~~-~~~--~~~~~~~---------~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~---~~~~~~~~~i~ 357 (517)
|++. ++. .+..+.. ....+.+++|+|+|+.+++...++. +++|+.. +..+. .........+.
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~--v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDK--VYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTE--EEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCE--EEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 9995 333 2333321 1234889999999996665566777 6666655 33222 12222333678
Q ss_pred EEEEccCCCEEEE-EeCCCcEEEEECCC--ceE----EeeccC------CCeeEEEEcCCCCEEEE-EeCCCeEEEEEcC
Q 042434 358 DLAVTPDGENLIS-VLSDKDIRILNLGT--YAE----RVISEE------HPITSLSVSVDCKNFIV-NLNSQEIHMWDVA 423 (517)
Q Consensus 358 ~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~----~~~~~~------~~i~~~~~s~~~~~l~~-~~~d~~i~~~d~~ 423 (517)
.++|+|+|+++++ ...++.+.+|++.. +.. ...... ..+..++|+|+|+++++ +..++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 8999999996665 45688999999874 331 111111 34788999999998755 4568999999986
Q ss_pred CCC--ccceEEeCcccCceEEEeecCCCCCcEEEEecCC-CcEEEE--ecCCCcee
Q 042434 424 GKW--EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-SQIYIW--NRRNSKPI 474 (517)
Q Consensus 424 ~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~iw--d~~~~~~~ 474 (517)
... .....+..+... ...+.++|||++|++++.+ +.|.+| |..+|++.
T Consensus 271 ~~g~~~~~~~~~~~~~~---~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 271 ADGHLTLIQQISTEGDF---PRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp GGGCEEEEEEEECSSSC---CCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCcEEEeEEEecCCCC---cCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 321 222233332222 3345569999988887764 899999 55667654
No 155
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=9.3e-21 Score=178.68 Aligned_cols=261 Identities=12% Similarity=0.056 Sum_probs=186.2
Q ss_pred cccccCCCcccEEEecccc-C-cEEEEEECCCCCEEE-EeeCCCcEEEEEecCCCeeeEEEEecc-C----CCCEEEEEE
Q 042434 204 CCGRDQIPTETVQILTEHK-N-EVWFVQFSNNGEYLA-SSSSDCSAIIWKVLEDSKLTLKHTLRS-H----QNPVSFVAW 275 (517)
Q Consensus 204 ~~~~~~~~~~~~~~l~~h~-~-~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~-h----~~~v~~l~~ 275 (517)
...++....+.+..+.... . .+.+++|+|+|++++ +++.++.|.+||+.++... ..+.. + ...+.+++|
T Consensus 13 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 89 (337)
T 1pby_B 13 LVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL---GRIDLSTPEERVKSLFGAAL 89 (337)
T ss_dssp EEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE---EEEECCBTTEEEECTTCEEE
T ss_pred EEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE---eeEEcCCcccccccccceEE
Confidence 3344444556666665322 2 588999999998664 5556789999999766432 32321 1 125678999
Q ss_pred CCCCCeEEEEe------------CCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC
Q 042434 276 SPDDTKLLTCG------------NAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN 343 (517)
Q Consensus 276 s~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~ 343 (517)
+|+|+++++++ .++.|.+||+.+++....+.. ...+.+++|+|++++++++ ++. ++.||..+.
T Consensus 90 s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~--i~~~d~~~~ 164 (337)
T 1pby_B 90 SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRD--LHVMDPEAG 164 (337)
T ss_dssp CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSS--EEEEETTTT
T ss_pred CCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCe--EEEEECCCC
Confidence 99999998886 579999999999988877754 4567889999999988888 455 999998865
Q ss_pred eeE-eeeCcCCCceEEEEEccCCCEEEEEeCCC------------------------cEEEEECCCceEE---eeccCCC
Q 042434 344 EIK-AWRGTRIPKVLDLAVTPDGENLISVLSDK------------------------DIRILNLGTYAER---VISEEHP 395 (517)
Q Consensus 344 ~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------~i~i~d~~~~~~~---~~~~~~~ 395 (517)
... .+..... ...+.|+|++..++..+..+ .|.+||+.+++.. ...+...
T Consensus 165 ~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 242 (337)
T 1pby_B 165 TLVEDKPIQSW--EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242 (337)
T ss_dssp EEEEEECSTTT--TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred cEeeeeecccc--CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCc
Confidence 543 3332221 11237889988665544332 4689999887632 2234456
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE
Q 042434 396 ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE 475 (517)
Q Consensus 396 i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 475 (517)
+..++|+|++++++++ ++.|.+||+.+. .....+..... +..+.++|+|+++++++.++.|++||+.+++.+.
T Consensus 243 ~~~~~~s~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~~~~----~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 243 YFSTAVNPAKTRAFGA--YNVLESFDLEKN-ASIKRVPLPHS----YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp EEEEEECTTSSEEEEE--ESEEEEEETTTT-EEEEEEECSSC----CCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred eeeEEECCCCCEEEEe--CCeEEEEECCCC-cCcceecCCCc----eeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence 7889999999999888 799999999876 44444433221 2345568999999999999999999999999988
Q ss_pred EecCCC
Q 042434 476 ILSGHS 481 (517)
Q Consensus 476 ~~~~h~ 481 (517)
.+..+.
T Consensus 316 ~~~~~~ 321 (337)
T 1pby_B 316 QVDLPG 321 (337)
T ss_dssp EEECGG
T ss_pred EEEcCC
Confidence 887553
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=2.5e-21 Score=197.00 Aligned_cols=232 Identities=9% Similarity=0.026 Sum_probs=177.5
Q ss_pred CCCEEEEEECCCCCeEEEEeC-CCeEEEEECCCCcEEEEeCCCC-CceEEEEEeCCCCeEEEeeC---CCceeEEEEeC-
Q 042434 267 QNPVSFVAWSPDDTKLLTCGN-AEVLKLWDVETGICKHTFGDHG-FIVSSCAWFPDSKRLVCGSS---DTEKGIFMCDC- 340 (517)
Q Consensus 267 ~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~---d~~v~i~~~~~- 340 (517)
..+|.+++|+|||+.||+++. ||++.||++.+++..+ +..+. ..+.+++|+|| +.+++++. +....+|.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 467999999999999999887 9999999997766554 44444 68999999999 77777765 44556888888
Q ss_pred -CCCeeEeeeCcCCCceEEEEEccCCCE-EEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCC----
Q 042434 341 -DGNEIKAWRGTRIPKVLDLAVTPDGEN-LISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS---- 414 (517)
Q Consensus 341 -~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---- 414 (517)
.+... .+.... .....+|+|+++. +++.+.++.+.+||+.+++......... .+++|+|||+++++++.+
T Consensus 99 ~~g~~~-~l~~~~--~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 99 RPGEEQ-RLEAVK--PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp STTCCE-ECTTSC--SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTE
T ss_pred CCCccc-cccCCC--CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCC
Confidence 65544 332222 3446688888863 3444455556699998877333322222 899999999999988776
Q ss_pred CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC--cEEEEecCCCceeEEecCCCCCeeEEE----
Q 042434 415 QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS--QIYIWNRRNSKPIEILSGHSMTVNCVS---- 488 (517)
Q Consensus 415 ~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~v~---- 488 (517)
+.|++||+.++. ...+..+... +....|+|||++|+++..+| .|++||+.+++.. .+.+|...+.+++
T Consensus 175 ~~i~~~d~~~g~--~~~l~~~~~~---~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 175 VSLFTSNLSSGG--LRVFDSGEGS---FSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI 248 (582)
T ss_dssp EEEEEEETTTCC--CEEECCSSCE---EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred eEEEEEcCCCCC--ceEeecCCCc---cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence 789999987752 3345554432 45667799999999888888 8999999999888 7888888888888
Q ss_pred ----ecCCCCcEEEEeeCCCcEEEeCC
Q 042434 489 ----WNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 489 ----~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
|+||| .++++++.||.+++|++
T Consensus 249 ~~~~~spdg-~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 249 TWLGYLPDG-RLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEECTTS-CEEEEEEETTEEEEEET
T ss_pred cceeEcCCC-cEEEEEEcCCcEEEEEE
Confidence 99999 89999999999999998
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=203.02 Aligned_cols=276 Identities=14% Similarity=0.125 Sum_probs=187.9
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC---CEEEEEECCCCCeEEEEeC---------CCeEEEE
Q 042434 227 FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN---PVSFVAWSPDDTKLLTCGN---------AEVLKLW 294 (517)
Q Consensus 227 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~l~s~~~---------dg~i~iw 294 (517)
+++|+|+|++++++ .|+.|++||+.++.. ...+..|.. .+.+++|||||++|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQS---YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCE---EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcE---EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence 67899999766654 699999999977643 333444433 4899999999999998876 7899999
Q ss_pred ECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee-CcCCCce-----------------
Q 042434 295 DVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR-GTRIPKV----------------- 356 (517)
Q Consensus 295 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~~~~~i----------------- 356 (517)
|+.+++.+... .....+.+++|+|||+.|+++. ++. |++|+..+.....+. ..+...+
T Consensus 96 d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~--i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 96 DLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNN--IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp ETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTE--EEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred ECCCCccccce-ecCcccccceECCCCCEEEEEE-CCe--EEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 99998763111 1235688999999999999986 555 999998765544332 2221112
Q ss_pred EEEEEccCCCEEEEEeCCC----------------------------------cEEEEECCCceE----Ee------ecc
Q 042434 357 LDLAVTPDGENLISVLSDK----------------------------------DIRILNLGTYAE----RV------ISE 392 (517)
Q Consensus 357 ~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~----~~------~~~ 392 (517)
.+++|+|||+.|++++.|. .|++||+.++.. .. ..+
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 4899999999999887652 788999988753 11 135
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC----CeEEEEE----cCCCCccceEE----eCcccCce--EEEeecCCCCCcEEEE--
Q 042434 393 EHPITSLSVSVDCKNFIVNLNS----QEIHMWD----VAGKWEKPFKY----TGHSQNKY--VIRSCFGGLDGTFIAS-- 456 (517)
Q Consensus 393 ~~~i~~~~~s~~~~~l~~~~~d----~~i~~~d----~~~~~~~~~~~----~~~~~~~~--~i~~~~~s~~~~~l~~-- 456 (517)
...+..++|+||++.+++.... ..|.+|| +.++ ...... .++..... ......|+|||+.++.
T Consensus 252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 252 DYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp CEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred cceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC-ceEEEEecccccCCceEccccCCccEECCCCCeEEEEE
Confidence 5678999999998766664432 2488899 6554 222222 23332211 0013456899996544
Q ss_pred ecCCC--cEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC----CCcEEEeCCCC
Q 042434 457 GSENS--QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD----DHTIRIWGPCQ 513 (517)
Q Consensus 457 ~~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~----dg~v~iw~~~~ 513 (517)
+..+| .|++||+.+++ ...+..+...+..+.++ ++..+++++.. ++.+++|.+..
T Consensus 331 ~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 331 SDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp ECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 44555 67888887776 45666666778888777 77445555544 48899998753
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=3.8e-20 Score=180.05 Aligned_cols=202 Identities=14% Similarity=0.077 Sum_probs=151.2
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCe--------eeEE----EEeccCCCCEEEEEECCCCCeEE----E
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSK--------LTLK----HTLRSHQNPVSFVAWSPDDTKLL----T 284 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~--------~~~~----~~~~~h~~~v~~l~~s~~~~~l~----s 284 (517)
+...++.+++++++.++++++.|+ ++||+...... .... .....+...|.+++|+|++++|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345688999999999999999888 89987631100 0000 01123567899999999999999 7
Q ss_pred EeCCCeEEEEECCCC--------c---EEEEeCCCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcC
Q 042434 285 CGNAEVLKLWDVETG--------I---CKHTFGDHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTR 352 (517)
Q Consensus 285 ~~~dg~i~iwd~~~~--------~---~~~~~~~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~ 352 (517)
|+.|+.|++||+.++ + ....+.+|...|.+++|+|+ +.+|++++.||+ |.+||............+
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~--v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS--IAVLQVTETVKVCATLPS 191 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC--EEEEEESSSEEEEEEECG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe--EEEEEcCCCcceeeccCC
Confidence 888999999998654 1 24566678999999999998 889999999999 778887765433323334
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeecc-------CCCeeEEEEcCCCCEEEEEe-CCC------eE
Q 042434 353 IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISE-------EHPITSLSVSVDCKNFIVNL-NSQ------EI 417 (517)
Q Consensus 353 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-------~~~i~~~~~s~~~~~l~~~~-~d~------~i 417 (517)
...+.+++|+|+|++|++|+.||.|++||.+... .....+ ...+.+++|++++.++++.+ .+| .+
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v 271 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence 4589999999999999999999999999998322 222111 22789999999887775543 333 38
Q ss_pred EEEEcCCC
Q 042434 418 HMWDVAGK 425 (517)
Q Consensus 418 ~~~d~~~~ 425 (517)
++|+++..
T Consensus 272 ~i~~l~~~ 279 (434)
T 2oit_A 272 VMALLPKK 279 (434)
T ss_dssp EEEECCCT
T ss_pred EEEEeccC
Confidence 99999754
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.2e-20 Score=196.95 Aligned_cols=302 Identities=11% Similarity=0.033 Sum_probs=199.5
Q ss_pred CcccccCCCcccEEEeccccC---cEEEEEECCCCCEEEEeeC---------CCcEEEEEecCCCeeeEEEEeccCCCCE
Q 042434 203 HCCGRDQIPTETVQILTEHKN---EVWFVQFSNNGEYLASSSS---------DCSAIIWKVLEDSKLTLKHTLRSHQNPV 270 (517)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~h~~---~v~~~~~s~~~~~l~t~~~---------dg~i~iw~~~~~~~~~~~~~~~~h~~~v 270 (517)
....++...++....+.+|.. .|.+++|||||++|++++. ++.|++||+.++... .. ......+
T Consensus 37 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~---~~-~~l~~~~ 112 (719)
T 1z68_A 37 NIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV---RG-NELPRPI 112 (719)
T ss_dssp CEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---CS-SCCCSSB
T ss_pred CEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc---cc-eecCccc
Confidence 344455555666666666654 4999999999999999876 789999999766320 00 1113568
Q ss_pred EEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeC-CCCCce-----------------EEEEEeCCCCeEEEeeCCC-
Q 042434 271 SFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFG-DHGFIV-----------------SSCAWFPDSKRLVCGSSDT- 331 (517)
Q Consensus 271 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v-----------------~~i~~~~~~~~l~~~~~d~- 331 (517)
.+++|||||+.|+++. ++.|++|++.+++...... ++...| .+++|+|||+.|++++.|.
T Consensus 113 ~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~ 191 (719)
T 1z68_A 113 QYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDT 191 (719)
T ss_dssp CCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECT
T ss_pred ccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCC
Confidence 8999999999999985 7899999999888765332 222222 4899999999999988652
Q ss_pred -------------------------------ceeEEEEeCCCCeeE---eee-----CcCCCceEEEEEccCCCEEEEEe
Q 042434 332 -------------------------------EKGIFMCDCDGNEIK---AWR-----GTRIPKVLDLAVTPDGENLISVL 372 (517)
Q Consensus 332 -------------------------------~v~i~~~~~~~~~~~---~~~-----~~~~~~i~~~~~~~~~~~l~~~~ 372 (517)
...+++||..+.... ... ..+...+..++|+||++.+++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~ 271 (719)
T 1z68_A 192 DIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWL 271 (719)
T ss_dssp TSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEE
T ss_pred CCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEe
Confidence 225889998875431 111 12445789999999987766644
Q ss_pred CC----CcEEEEE----CCCceEE-ee-----ccCCCee-----EEEEcCCCCEEEE--EeCCC--eEEEEEcCCCCccc
Q 042434 373 SD----KDIRILN----LGTYAER-VI-----SEEHPIT-----SLSVSVDCKNFIV--NLNSQ--EIHMWDVAGKWEKP 429 (517)
Q Consensus 373 ~d----g~i~i~d----~~~~~~~-~~-----~~~~~i~-----~~~~s~~~~~l~~--~~~d~--~i~~~d~~~~~~~~ 429 (517)
.. ..|.+|| ..+++.. .. .+...+. .+.|+|||+.++. +..+| .|.+||+.++. .
T Consensus 272 ~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~ 349 (719)
T 1z68_A 272 KRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--A 349 (719)
T ss_dssp ESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--C
T ss_pred ccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--e
Confidence 32 2488899 7776622 22 3444455 7899999996654 43455 57777776542 3
Q ss_pred eEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCC--Cc-eeEEec----CCCCCeeEEEecCCCCcEE
Q 042434 430 FKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRN--SK-PIEILS----GHSMTVNCVSWNPKRPKML 497 (517)
Q Consensus 430 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~--~~-~~~~~~----~h~~~v~~v~~~~~~~~~l 497 (517)
..+..+.... ....+ + +++.|+..+.+ +..++|.+.. +. ....+. +|...+..+.|+|++..++
T Consensus 350 ~~lt~~~~~v--~~~~~-~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~ 425 (719)
T 1z68_A 350 IQITSGKWEA--INIFR-V-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYA 425 (719)
T ss_dssp EECSCSSSCE--EEEEE-E-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEE
T ss_pred EecccCceEE--EEEEE-E-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEE
Confidence 3443332221 12233 3 66666555544 7888887653 42 123333 2667788999999996555
Q ss_pred EEeeCC--CcEEEeCCCCCC
Q 042434 498 ASASDD--HTIRIWGPCQSS 515 (517)
Q Consensus 498 ~s~~~d--g~v~iw~~~~~~ 515 (517)
++++.+ ..+.+|++.+++
T Consensus 426 ~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 426 LVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp EEECCBSSCEEEEECSSSCC
T ss_pred EEcCCCCCCeEEEEECCCCC
Confidence 566554 578899987765
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=1.5e-19 Score=172.37 Aligned_cols=276 Identities=8% Similarity=0.046 Sum_probs=180.7
Q ss_pred EEEEeeCC--CcEEEEEecC-CCeeeEEEEec-cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC-CCcEEEEeCC-CC
Q 042434 236 YLASSSSD--CSAIIWKVLE-DSKLTLKHTLR-SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE-TGICKHTFGD-HG 309 (517)
Q Consensus 236 ~l~t~~~d--g~i~iw~~~~-~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~-~~ 309 (517)
+++.|+.. +.|.+|+++. ...+....... .....+..++|+||+++|++++.+ .|.+|++. +++....... ..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35556543 5688887743 23333333322 234568899999999999998888 99999997 7876543321 11
Q ss_pred CceEEEEEeCCCCe--EEEee-------------CCCceeEEEEeCCCCeeEeeeC---cCCCceEEEEEccCCCEEEEE
Q 042434 310 FIVSSCAWFPDSKR--LVCGS-------------SDTEKGIFMCDCDGNEIKAWRG---TRIPKVLDLAVTPDGENLISV 371 (517)
Q Consensus 310 ~~v~~i~~~~~~~~--l~~~~-------------~d~~v~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~ 371 (517)
+.+.+++|+|+|++ ++++. .++.+.+|..+..+........ .....+.+++|+|+|++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23556899999994 44553 5788444444434443322221 233478999999999988877
Q ss_pred eC-CCcEEEEECC-CceEE---eec---cCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCC--CCcc--ceEEeCccc-
Q 042434 372 LS-DKDIRILNLG-TYAER---VIS---EEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAG--KWEK--PFKYTGHSQ- 437 (517)
Q Consensus 372 ~~-dg~i~i~d~~-~~~~~---~~~---~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~--~~~~--~~~~~~~~~- 437 (517)
+. ++.|++||+. +++.. ... +...+..++|+|+|++++++.. ++.|.+|++.. +... ...+.....
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 64 6799999998 55421 121 2566899999999999888765 78999998753 2111 111211111
Q ss_pred --C-c------eEEEeec-CCCCCcEEEEecCCC------cEEEEecC-CCceeE---EecCCCCCeeEEEecC---CCC
Q 042434 438 --N-K------YVIRSCF-GGLDGTFIASGSENS------QIYIWNRR-NSKPIE---ILSGHSMTVNCVSWNP---KRP 494 (517)
Q Consensus 438 --~-~------~~i~~~~-~s~~~~~l~~~~~dg------~i~iwd~~-~~~~~~---~~~~h~~~v~~v~~~~---~~~ 494 (517)
. . .....+. ++|||++|++++.+. .|.+|++. ++++.. ....+...+..++|+| +|
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg- 321 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD- 321 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT-
T ss_pred cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC-
Confidence 0 1 0244555 799999988776432 89999986 666543 2334555678899999 78
Q ss_pred cEEEEeeC-CCcEEEeCCCC
Q 042434 495 KMLASASD-DHTIRIWGPCQ 513 (517)
Q Consensus 495 ~~l~s~~~-dg~v~iw~~~~ 513 (517)
.+|++++. ++.|.+|+++.
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp TEEEEECSSSCEEEEEEEET
T ss_pred CEEEEEEcCCCeEEEEEEch
Confidence 57777765 58999998764
No 161
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.85 E-value=2.7e-20 Score=179.81 Aligned_cols=289 Identities=12% Similarity=0.029 Sum_probs=189.3
Q ss_pred CCCcccEEEeccccCc-----EEEEEECCCCCEEEEeeCC---CcEEEEEecCCCeeeEEEEeccCCCCE-EEEEECCCC
Q 042434 209 QIPTETVQILTEHKNE-----VWFVQFSNNGEYLASSSSD---CSAIIWKVLEDSKLTLKHTLRSHQNPV-SFVAWSPDD 279 (517)
Q Consensus 209 ~~~~~~~~~l~~h~~~-----v~~~~~s~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~h~~~v-~~l~~s~~~ 279 (517)
......+..+..+... +.+++|||||++|+.+... ..|.+|+..++. . ..+..+...+ ..+.|+|||
T Consensus 17 ~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~---~-~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 17 SDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ---A-VQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp TTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE---E-EECCCSSCBCTTTCEECTTS
T ss_pred CCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc---E-EEeecCCCCccccceECCCC
Confidence 3444556666655444 6788999999998877543 367788876542 2 2233333333 337899999
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEE-------------------EEEeCCCCeEEEeeC---CCceeEEE
Q 042434 280 TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSS-------------------CAWFPDSKRLVCGSS---DTEKGIFM 337 (517)
Q Consensus 280 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------------------i~~~~~~~~l~~~~~---d~~v~i~~ 337 (517)
++|+.++.++.|.+||+.+++.......+...... +.|+|+++.++.+.. ++...++.
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 99999999999999999998876665544433222 345677776655431 33345999
Q ss_pred EeCCCCeeEeeeCcCCCceEEEEEcc-CCCEEEEEeCC------CcEEEEECCCce-EEeecc--CCCeeEEEEcCCCCE
Q 042434 338 CDCDGNEIKAWRGTRIPKVLDLAVTP-DGENLISVLSD------KDIRILNLGTYA-ERVISE--EHPITSLSVSVDCKN 407 (517)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~-~~~~~~--~~~i~~~~~s~~~~~ 407 (517)
|+..+......... ...+..+.|+| ++..++..+.+ ..|.+||+.+.. .....+ ...+..++|+|+|+.
T Consensus 173 ~d~~~g~~~~~~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 173 VDIETGELEVIHQD-TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp EETTTCCEEEEEEE-SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred EECCCCcEEeeccC-CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 99887665544432 34688999999 78877766543 368899987765 222222 225778999999998
Q ss_pred EEEEeCC-----CeEEEEEcCCCCccceEEeCcccCceEEEeecCCC-CCcEEEEec----------------CCCcEEE
Q 042434 408 FIVNLNS-----QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTFIASGS----------------ENSQIYI 465 (517)
Q Consensus 408 l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~----------------~dg~i~i 465 (517)
++..+.+ +.|++||+.++... .+..... .. ..|+| ||+++++++ .++.|++
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~--~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~ 324 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENE--EVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYV 324 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEE--EEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEE
T ss_pred EEEEecCCCCccceEEEEECCCCCeE--EeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEE
Confidence 8777543 44999999765222 1111111 11 44578 999888754 3478999
Q ss_pred EecCCCceeEEecCCCC-----------CeeEEEecCCCCcEEEEee-CCCcEEEeCC
Q 042434 466 WNRRNSKPIEILSGHSM-----------TVNCVSWNPKRPKMLASAS-DDHTIRIWGP 511 (517)
Q Consensus 466 wd~~~~~~~~~~~~h~~-----------~v~~v~~~~~~~~~l~s~~-~dg~v~iw~~ 511 (517)
||+.+++.. .+..+.. .+..++|+|+|. .|+.++ .++...+|.+
T Consensus 325 ~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 325 LNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDD-GVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp EETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSS-EEEEEECTTSSCEEEEE
T ss_pred EecccCceE-EccCCCCccccccccccCCCCCceEccCCC-eEEEEecCCCCceEEEE
Confidence 999888754 3444443 267789999994 555544 4566555544
No 162
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=2.7e-19 Score=173.99 Aligned_cols=164 Identities=17% Similarity=0.153 Sum_probs=133.8
Q ss_pred cccCcEEEEEECCCCCEEE----EeeCCCcEEEEEecCC--------CeeeEEEEeccCCCCEEEEEECCC-CCeEEEEe
Q 042434 220 EHKNEVWFVQFSNNGEYLA----SSSSDCSAIIWKVLED--------SKLTLKHTLRSHQNPVSFVAWSPD-DTKLLTCG 286 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~~l~----t~~~dg~i~iw~~~~~--------~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~ 286 (517)
.|.+.|++++|+|+|++|| +|+.|+.|+|||+.+. ..+.....+.+|...|.+++|+|+ +.+|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 3678899999999999999 7889999999998654 222345667789999999999998 78999999
Q ss_pred CCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcC------CCceEEEE
Q 042434 287 NAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTR------IPKVLDLA 360 (517)
Q Consensus 287 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~------~~~i~~~~ 360 (517)
.||+|++||++++........|...|.+++|+|+|++|++|+.||. |.+||.++.....+..+. ...+.++.
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~ 247 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT--VVQYLPTLQEKKVIPCPPFYESDHPVRVLDVL 247 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC--EEEECTTCCEEEEECCCTTCCTTSCEEEEEEE
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc--EEEEccCCcccccccCCcccCCCCceeEEEEE
Confidence 9999999999999777666678899999999999999999999999 888888855444443221 23789999
Q ss_pred EccCCCEEEEEe-CCC------cEEEEECCCc
Q 042434 361 VTPDGENLISVL-SDK------DIRILNLGTY 385 (517)
Q Consensus 361 ~~~~~~~l~~~~-~dg------~i~i~d~~~~ 385 (517)
|++++.++++.+ .+| .+++|+++..
T Consensus 248 w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 248 WIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 999887765433 343 3899999764
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=3e-19 Score=186.58 Aligned_cols=268 Identities=11% Similarity=0.053 Sum_probs=181.5
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCC-----EEEEEECCCCCeEEEEeCC---------C
Q 042434 224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNP-----VSFVAWSPDDTKLLTCGNA---------E 289 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~-----v~~l~~s~~~~~l~s~~~d---------g 289 (517)
...+++|+|||++++++ ||.|++||+.++.. ...+.+|... ...++|||||++|++++.+ +
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS---SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCE---EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCce---EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 45578999999999986 89999999987753 3445666532 2447899999999998876 5
Q ss_pred eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC-cCCC--------------
Q 042434 290 VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG-TRIP-------------- 354 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~-------------- 354 (517)
.+.+||+.+++.. .+..+...+...+|||||+.|+.+. ++. |++|+..+.....+.. ....
T Consensus 93 ~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~--i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 93 SYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NND--IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp EEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTE--EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred EEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCe--EEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence 6779999998754 4667778899999999999999985 455 9999987655544332 1111
Q ss_pred ---ceEEEEEccCCCEEEEEeCCC------------------------------------cEEEEECCC---c---eE-E
Q 042434 355 ---KVLDLAVTPDGENLISVLSDK------------------------------------DIRILNLGT---Y---AE-R 388 (517)
Q Consensus 355 ---~i~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~---~~-~ 388 (517)
....+.|||||+.|+.++.|. .|++||+.+ + .. .
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~ 248 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ 248 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE
T ss_pred hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE
Confidence 123589999999998875321 488899988 6 32 2
Q ss_pred eec------cCCCeeEEEEcCCCCEEEEEeC----CCeEEEEEcCCCC-----ccceEE--eCcccCceE--EEeecCCC
Q 042434 389 VIS------EEHPITSLSVSVDCKNFIVNLN----SQEIHMWDVAGKW-----EKPFKY--TGHSQNKYV--IRSCFGGL 449 (517)
Q Consensus 389 ~~~------~~~~i~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~-----~~~~~~--~~~~~~~~~--i~~~~~s~ 449 (517)
... +...+..++|+|||+.++.... +..|.+||+.++. .....+ .++...... .....|+|
T Consensus 249 l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 249 ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence 221 5556889999999997665543 2379999998763 112222 223221110 11344699
Q ss_pred CCcEEE-EecC-C--CcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC
Q 042434 450 DGTFIA-SGSE-N--SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD 502 (517)
Q Consensus 450 ~~~~l~-~~~~-d--g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~ 502 (517)
||+.++ ..+. + ..|++||..+++... +......|..+.+ +++..++++++.
T Consensus 329 DG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~d~~~i~f~~~~ 383 (740)
T 4a5s_A 329 DGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-LTSDYLYYISNE 383 (740)
T ss_dssp TSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-ECSSEEEEEESC
T ss_pred CCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEE-EeCCEEEEEEec
Confidence 999876 5553 3 368899988766554 4434556666543 335355556554
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.83 E-value=2.3e-18 Score=163.38 Aligned_cols=279 Identities=13% Similarity=0.085 Sum_probs=192.4
Q ss_pred CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEee----------CCCcEEEEEecCCCeeeEEEEecc---CCCC
Q 042434 203 HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSS----------SDCSAIIWKVLEDSKLTLKHTLRS---HQNP 269 (517)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~---h~~~ 269 (517)
....++....+.+..+..+..+ .++|+|||+++++++ .++.|.+||..+......+..... +...
T Consensus 32 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~ 109 (361)
T 2oiz_A 32 RVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNY 109 (361)
T ss_dssp EEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCC
T ss_pred eEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCC
Confidence 4445565566777777777666 899999999999886 367799999865543332222111 2345
Q ss_pred EEEEEECCCCCeEEEEeC--CCeEEEEECCCCcEEEE-eCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCee
Q 042434 270 VSFVAWSPDDTKLLTCGN--AEVLKLWDVETGICKHT-FGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEI 345 (517)
Q Consensus 270 v~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~ 345 (517)
...++|+|||++|+++.. +++|.+||+.+++.+.. +.... ...+.+.|++ ..+++.+.||.+.++.++..+...
T Consensus 110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp GGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred cceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence 678999999999998864 57999999999998887 64322 2335667765 677888889984444444334433
Q ss_pred Eeee-----CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeec----------c----CCCeeEEEEcCCCC
Q 042434 346 KAWR-----GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVIS----------E----EHPITSLSVSVDCK 406 (517)
Q Consensus 346 ~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------~----~~~i~~~~~s~~~~ 406 (517)
.... .... ....+.+++++..++..+.++.+.++|+......... . ......++++|+++
T Consensus 188 ~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~ 266 (361)
T 2oiz_A 188 SQSRSKQMFSVKD-DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASG 266 (361)
T ss_dssp EEEECCCCSCTTT-SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTT
T ss_pred eeccccceEcCCC-CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCC
Confidence 1111 0111 1123334677777888888999999998754311100 0 11122378999988
Q ss_pred EEEEEeC-----------CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC--ce
Q 042434 407 NFIVNLN-----------SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS--KP 473 (517)
Q Consensus 407 ~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~ 473 (517)
.++++.. .+.|.+||+.+. +.+..+..+. ...+.++|||++|++++. +.|.+||..++ +.
T Consensus 267 ~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~-----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~ 339 (361)
T 2oiz_A 267 RMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD-----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKL 339 (361)
T ss_dssp EEEEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT-----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEE
T ss_pred eEEEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecCC-----eeEEEECCCCCEEEEeCC-CeEEEEECCCCccee
Confidence 8887653 348999999887 5666665554 334455899999999887 99999999999 99
Q ss_pred eEEecCCCCCeeEEEecCCC
Q 042434 474 IEILSGHSMTVNCVSWNPKR 493 (517)
Q Consensus 474 ~~~~~~h~~~v~~v~~~~~~ 493 (517)
+.++..+......++++|+|
T Consensus 340 ~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 340 LRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp EEEETTSCSSEEEEEECCCS
T ss_pred eEEeccCCCCcEEEEecCCC
Confidence 99987777888999999998
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.83 E-value=1.2e-17 Score=153.67 Aligned_cols=244 Identities=14% Similarity=0.159 Sum_probs=180.2
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCC------CCCceEEEEEe-CCCCeEEEeeC-CCceeEE
Q 042434 265 SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGD------HGFIVSSCAWF-PDSKRLVCGSS-DTEKGIF 336 (517)
Q Consensus 265 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~i~~~-~~~~~l~~~~~-d~~v~i~ 336 (517)
++-..+.+++++++++++++...++.|.+||.. ++....+.. +...+.++++. +++..+++... ++. |+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~--i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ--IQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE--EE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE--EE
Confidence 345678999999999988888889999999986 666666632 33568899995 66666655533 566 88
Q ss_pred EEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEee---ccCCCeeEEEEcCCCCEEEEEeC
Q 042434 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI---SEEHPITSLSVSVDCKNFIVNLN 413 (517)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~ 413 (517)
.|+..+..+..+.......+..++++++|+.+++...++.|.+||......... .....+..++++++++.+++...
T Consensus 104 ~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 104 IYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp EECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred EECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 899777777666544445789999999999888777889999999765443333 23346899999999998777788
Q ss_pred CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC-cEEEEecCCCceeEEecCCC--CCeeEEEec
Q 042434 414 SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS-QIYIWNRRNSKPIEILSGHS--MTVNCVSWN 490 (517)
Q Consensus 414 d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~--~~v~~v~~~ 490 (517)
++.|.+||.... ....+..... ......++++++|+++++...++ .|.+||. +++.+..+..+. ..+.+++++
T Consensus 184 ~~~i~~~~~~g~--~~~~~~~~g~-~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~ 259 (286)
T 1q7f_A 184 AHCVKVFNYEGQ--YLRQIGGEGI-TNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM 259 (286)
T ss_dssp GTEEEEEETTCC--EEEEESCTTT-SCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred CCEEEEEcCCCC--EEEEEccCCc-cCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC
Confidence 999999998543 3333332211 11234455689999888888776 9999995 577777776543 347899999
Q ss_pred CCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434 491 PKRPKMLASASDDHTIRIWGPCQSSEV 517 (517)
Q Consensus 491 ~~~~~~l~s~~~dg~v~iw~~~~~~~v 517 (517)
|+| .++++ +.|+.|++|++....+|
T Consensus 260 ~~g-~l~vs-~~~~~v~v~~~~~~~pv 284 (286)
T 1q7f_A 260 DDG-SVVLA-SKDYRLYIYRYVQLAPV 284 (286)
T ss_dssp TTT-EEEEE-ETTTEEEEEECSCCCCT
T ss_pred CCC-cEEEE-CCCCeEEEEEccccccc
Confidence 999 67777 67999999999876654
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.83 E-value=1.1e-18 Score=180.47 Aligned_cols=290 Identities=10% Similarity=0.105 Sum_probs=199.4
Q ss_pred EEeccccCcEEEEEECCCCCEEEEe--eCCCcEEEEEecCCCeeeEEEEeccCCCCEE---------EEEEC--CCCCe-
Q 042434 216 QILTEHKNEVWFVQFSNNGEYLASS--SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVS---------FVAWS--PDDTK- 281 (517)
Q Consensus 216 ~~l~~h~~~v~~~~~s~~~~~l~t~--~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~---------~l~~s--~~~~~- 281 (517)
..+.+|...+..++|++++-++++. +.++...||....+.. ...+..|...+. ...|+ |||+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA---EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC---EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC---cceeCCCCccccccccccCCccceeeeecCCCeE
Confidence 3467899999999999887777777 5688999999744432 345666766666 56565 99998
Q ss_pred EEEEeC-CCeEEEEECC--C-CcEEEEeCC-----CCCceEEEEEeCCCCeEEEeeCC--------CceeEEEEeCCC--
Q 042434 282 LLTCGN-AEVLKLWDVE--T-GICKHTFGD-----HGFIVSSCAWFPDSKRLVCGSSD--------TEKGIFMCDCDG-- 342 (517)
Q Consensus 282 l~s~~~-dg~i~iwd~~--~-~~~~~~~~~-----~~~~v~~i~~~~~~~~l~~~~~d--------~~v~i~~~~~~~-- 342 (517)
|+.++. +..|.+|++. + +. ...+.. +...+.+++|+|||+.|++++.+ +...|+.|+..+
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred EEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 776554 5677777775 3 44 444544 66788999999999999988865 224599999987
Q ss_pred ----CeeEeee-CcCCCceEEEEEccCCCEEEEEeCC--------CcEEEEECC-Cc---e-EEeec-cCCCeeEEEEcC
Q 042434 343 ----NEIKAWR-GTRIPKVLDLAVTPDGENLISVLSD--------KDIRILNLG-TY---A-ERVIS-EEHPITSLSVSV 403 (517)
Q Consensus 343 ----~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~-~~~~~-~~~~i~~~~~s~ 403 (517)
.....+. .+. ..+..++|+|||++|+.++.+ ..|++||+. ++ . ..... +...+..+.|+|
T Consensus 173 ~~~~~~~~~l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp 251 (662)
T 3azo_A 173 AADRSAVRELSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP 251 (662)
T ss_dssp TTCGGGSEESSCSCS-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT
T ss_pred cccCCceeEEEecCC-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC
Confidence 6665555 333 478889999999999987755 379999998 45 3 23333 357889999999
Q ss_pred CCCEEEEEeCCC--eEEEEEcCCCCccceEEeCcccCc----e--EEEeecCCCCCcEEEEecCCCcEEEE--ecCCCce
Q 042434 404 DCKNFIVNLNSQ--EIHMWDVAGKWEKPFKYTGHSQNK----Y--VIRSCFGGLDGTFIASGSENSQIYIW--NRRNSKP 473 (517)
Q Consensus 404 ~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~----~--~i~~~~~s~~~~~l~~~~~dg~i~iw--d~~~~~~ 473 (517)
||+.++++..++ .|.+||+.++ .. ..+..+.... + .+..+.++++++++++++. +.+++| |..+++
T Consensus 252 dg~l~~~~~~~~~~~l~~~~~~~~-~~-~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~- 327 (662)
T 3azo_A 252 DGSLIVATDRTGWWNLHRVDPATG-AA-TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE- 327 (662)
T ss_dssp TSCEEEEECTTSSCEEEEECTTTC-CE-EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-
T ss_pred CCeEEEEECCCCCeEEEEEECCCC-ce-eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-
Confidence 999777777777 5666666443 22 2222111110 0 0223445789999999998 999999 655555
Q ss_pred eEEecCCCCCeeEE-EecCCCCcEEEEeeCCCc--EEEeCCCCCC
Q 042434 474 IEILSGHSMTVNCV-SWNPKRPKMLASASDDHT--IRIWGPCQSS 515 (517)
Q Consensus 474 ~~~~~~h~~~v~~v-~~~~~~~~~l~s~~~dg~--v~iw~~~~~~ 515 (517)
+..+..|...+..+ +++++. .++++++.+.. |.+|++.+++
T Consensus 328 ~~~l~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 328 LVDAAGPWTEWAATLTVSGTR-AVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp EEECCSSCCEEEEEEEEETTE-EEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEecCCCCeEEEEEecCCCE-EEEEEcCCCCCCEEEEEECCCCc
Confidence 67788888888877 555444 34455555544 5555655543
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=2.4e-18 Score=164.03 Aligned_cols=243 Identities=9% Similarity=0.068 Sum_probs=164.0
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEec-CCCeeeEEEEeccCCCCEEEEEECCCCCe--EEEEe-----------
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL-EDSKLTLKHTLRSHQNPVSFVAWSPDDTK--LLTCG----------- 286 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~~~--l~s~~----------- 286 (517)
+...+..++|+|+|++|++++.+ .|.+|++. ++ ..........+ +.+.+++|+|||++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g-~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT-EIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT-EEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCC-CEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 44578899999999999998887 99999996 44 22222222212 23566899999994 55553
Q ss_pred --CCCeEEEEECC-CCcEEEEeC----CCCCceEEEEEeCCCCeEEEeeC-CCceeEEEEeCC-CCeeE---eeeCc-CC
Q 042434 287 --NAEVLKLWDVE-TGICKHTFG----DHGFIVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCD-GNEIK---AWRGT-RI 353 (517)
Q Consensus 287 --~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~-~~~~~---~~~~~-~~ 353 (517)
.+|.+.+|++. +++....+. .+...+.+++|+|||++++++.. ++. |++|+.. +..+. ..... +.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~--v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK--LWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE--EEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCE--EEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 466554433 24567899999999998887764 455 7777765 33332 22211 23
Q ss_pred CceEEEEEccCCCEEEEEeC-CCcEEEEECC--CceEE-----e--eccC----C-------CeeEEE-EcCCCCEEEEE
Q 042434 354 PKVLDLAVTPDGENLISVLS-DKDIRILNLG--TYAER-----V--ISEE----H-------PITSLS-VSVDCKNFIVN 411 (517)
Q Consensus 354 ~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~-----~--~~~~----~-------~i~~~~-~s~~~~~l~~~ 411 (517)
..+..++|+|+|+++++++. ++.|.+|++. +++.. . .... . .+..++ |+|||++++++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence 46889999999999887775 6899999865 33321 1 1111 1 478899 99999998877
Q ss_pred eCC-C-----eEEEEEcCCCCccce---EEeCcccCceEEEeecCCC---CCcEEEEecCC-CcEEEEecCCC
Q 042434 412 LNS-Q-----EIHMWDVAGKWEKPF---KYTGHSQNKYVIRSCFGGL---DGTFIASGSEN-SQIYIWNRRNS 471 (517)
Q Consensus 412 ~~d-~-----~i~~~d~~~~~~~~~---~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~d-g~i~iwd~~~~ 471 (517)
..+ + .|.+|++........ ....+... ...+.++| ||++|++++.+ +.|.+|++...
T Consensus 273 ~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~---~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG---GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC---TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC---cccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 653 2 899999963212221 12112111 22345578 89999998865 89999998765
No 168
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.82 E-value=1.5e-17 Score=156.63 Aligned_cols=271 Identities=11% Similarity=0.082 Sum_probs=191.0
Q ss_pred CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE
Q 042434 223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK 302 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 302 (517)
..|.++.|++++..++..+.++.++.|. + .....+..+...+.+++|+|++++++++..++.|.+||..+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---A---EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C---EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred cccceeeecCCccceeEEeecccCcccc---c---ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence 4567788999888888778888999993 2 233556667778899999999998888888999999999988866
Q ss_pred EEeCCCCCceEEEEEeCCCCeEEEeeCC----CceeEEEEeCCCCeeEeee--CcCCCceEEEEEccCCCEEEEEeC---
Q 042434 303 HTFGDHGFIVSSCAWFPDSKRLVCGSSD----TEKGIFMCDCDGNEIKAWR--GTRIPKVLDLAVTPDGENLISVLS--- 373 (517)
Q Consensus 303 ~~~~~~~~~v~~i~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~--- 373 (517)
.....+...+.+++++|+++++++...+ +. |+.|+..+....... ......+.+++++|+|+.+++...
T Consensus 80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 157 (333)
T 2dg1_A 80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG--IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS 157 (333)
T ss_dssp EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCE--EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT
T ss_pred EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCce--EEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc
Confidence 5544566789999999999888777655 45 899998876654322 122346889999999987776653
Q ss_pred ---CCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEe----CcccCceEEEe
Q 042434 374 ---DKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYT----GHSQNKYVIRS 444 (517)
Q Consensus 374 ---dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~----~~~~~~~~i~~ 444 (517)
.+.|..+|..+.. .........+..++|+|+++.++++ +.++.|.+||+.........+. ...........
T Consensus 158 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 237 (333)
T 2dg1_A 158 TNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDS 237 (333)
T ss_dssp TBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEE
T ss_pred cCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCc
Confidence 3567777776544 2222333457889999999866554 5578999999964212211110 00001123445
Q ss_pred ecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCC------CeeEEEecCCCCcEEEEeeC
Q 042434 445 CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSM------TVNCVSWNPKRPKMLASASD 502 (517)
Q Consensus 445 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~------~v~~v~~~~~~~~~l~s~~~ 502 (517)
+.++++|++.++...++.|.+||. +++.+..+..+.. .+.+++|+|++..+++++..
T Consensus 238 i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 238 CCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred eEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 666889998888777899999998 5777776654433 68999999997444444443
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.81 E-value=7.2e-18 Score=160.02 Aligned_cols=269 Identities=11% Similarity=0.123 Sum_probs=183.3
Q ss_pred CCCEEEEee------CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe----------CCCeEEEEEC
Q 042434 233 NGEYLASSS------SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG----------NAEVLKLWDV 296 (517)
Q Consensus 233 ~~~~l~t~~------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iwd~ 296 (517)
+++++++.. .|+.|.+||..+++ ...++..+..+ .++|+||++++++++ .++.|.+||.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~---~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGK---FLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCC---EEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCe---EEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 555555543 37899999987663 34555555554 899999999999886 3668999999
Q ss_pred CCCcEEEEeCCC------CCceEEEEEeCCCCeEEEeeC--CCceeEEEEeCCCCeeEee-eCcCCCceEEEEEccCC-C
Q 042434 297 ETGICKHTFGDH------GFIVSSCAWFPDSKRLVCGSS--DTEKGIFMCDCDGNEIKAW-RGTRIPKVLDLAVTPDG-E 366 (517)
Q Consensus 297 ~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~-~ 366 (517)
.+++.+..+... ......++++|||++++++.. ++. |.+||......... .... ....+.+.|++ .
T Consensus 89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~--v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~ 164 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATS--IGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPR 164 (361)
T ss_dssp TTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEE--EEEEETTTTEEEEEEGGGT--TEEEEEECTTSSS
T ss_pred cCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCe--EEEEECCCCcEEEEEecCC--CcceeEEcCCCCe
Confidence 999988877532 345678999999999999875 455 88889887655332 2221 22335567765 5
Q ss_pred EEEEEeCCCcEEEEECCC-ceEE-------eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccce-EEeCcc-
Q 042434 367 NLISVLSDKDIRILNLGT-YAER-------VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPF-KYTGHS- 436 (517)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~-~~~~-------~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~- 436 (517)
.+++.+.||.+.+|+... ++.. ..........+.+++++..++..+.++.+.++|+........ .+....
T Consensus 165 ~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~ 244 (361)
T 2oiz_A 165 SFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLND 244 (361)
T ss_dssp EEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCH
T ss_pred eEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCc
Confidence 778888999999998864 3322 111111122333467777888888889999999865422111 111000
Q ss_pred ---cCceE---EEeecCCCCCcEEEEecC-----------CCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEE
Q 042434 437 ---QNKYV---IRSCFGGLDGTFIASGSE-----------NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLAS 499 (517)
Q Consensus 437 ---~~~~~---i~~~~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s 499 (517)
..... ...+.++|+++.++++.. .+.|.+||+.+++.+.++..+. +.+++|+|+| ++|++
T Consensus 245 ~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg-~~l~v 321 (361)
T 2oiz_A 245 EDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQR-NLMLT 321 (361)
T ss_dssp HHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTT-TEEEE
T ss_pred cccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCC-CEEEE
Confidence 00000 001344788887776543 3489999999999999999876 9999999999 57777
Q ss_pred eeCCCcEEEeCCCCC
Q 042434 500 ASDDHTIRIWGPCQS 514 (517)
Q Consensus 500 ~~~dg~v~iw~~~~~ 514 (517)
++. +.|.+||..++
T Consensus 322 ~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 322 LDG-GNVNVYDISQP 335 (361)
T ss_dssp ECS-SCEEEEECSSS
T ss_pred eCC-CeEEEEECCCC
Confidence 776 99999999987
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=2.5e-18 Score=179.59 Aligned_cols=304 Identities=13% Similarity=0.093 Sum_probs=195.3
Q ss_pred CCCcccccCCCcccEEEeccccCc-----EEEEEECCCCCEEEEeeCC---------CcEEEEEecCCCeeeEEEEeccC
Q 042434 201 EDHCCGRDQIPTETVQILTEHKNE-----VWFVQFSNNGEYLASSSSD---------CSAIIWKVLEDSKLTLKHTLRSH 266 (517)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l~~h~~~-----v~~~~~s~~~~~l~t~~~d---------g~i~iw~~~~~~~~~~~~~~~~h 266 (517)
++....++...+++...+.+|... ...++|||||++|+.++.+ +.+.+||+.++.. ..+..|
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~----~~l~~~ 110 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL----ITEERI 110 (740)
T ss_dssp TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE----CCSSCC
T ss_pred CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcE----EEcccC
Confidence 344455666666777778877643 2347889999999998876 5677999976632 346678
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe-CCCCCce-----------------EEEEEeCCCCeEEEee
Q 042434 267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF-GDHGFIV-----------------SSCAWFPDSKRLVCGS 328 (517)
Q Consensus 267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~i~~~~~~~~l~~~~ 328 (517)
...+...+|||||+.||.+ .++.|.+|++.+++..+.. .++...+ ..+.|||||+.|+.++
T Consensus 111 ~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 111 PNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp CTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred CCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 8899999999999999987 4689999999988765432 2222222 3489999999999875
Q ss_pred CCC----------------------------------ceeEEEEeCCC---C---eeEeeeC-----cCCCceEEEEEcc
Q 042434 329 SDT----------------------------------EKGIFMCDCDG---N---EIKAWRG-----TRIPKVLDLAVTP 363 (517)
Q Consensus 329 ~d~----------------------------------~v~i~~~~~~~---~---~~~~~~~-----~~~~~i~~~~~~~ 363 (517)
.|. .+.+++||..+ . ....+.. .+...+..++|+|
T Consensus 190 ~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp 269 (740)
T 4a5s_A 190 FNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT 269 (740)
T ss_dssp EECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE
T ss_pred EcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC
Confidence 432 23588888877 5 3433332 1445788999999
Q ss_pred CCCEEEEEeC----CCcEEEEECCCce--------EEe--eccCCCe-----eEEEEcCCCCEEE-EEeC-CC--eEEEE
Q 042434 364 DGENLISVLS----DKDIRILNLGTYA--------ERV--ISEEHPI-----TSLSVSVDCKNFI-VNLN-SQ--EIHMW 420 (517)
Q Consensus 364 ~~~~l~~~~~----dg~i~i~d~~~~~--------~~~--~~~~~~i-----~~~~~s~~~~~l~-~~~~-d~--~i~~~ 420 (517)
||+.++.... +..|.+||+.+++ ... ..+...+ ....|+|||+.++ ..+. +| .|++|
T Consensus 270 dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 270 QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF 349 (740)
T ss_dssp TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence 9996665543 2379999987764 111 2233333 3788999999877 5553 44 68888
Q ss_pred EcCCCCccceEEeCcccCceEEEeecCCCCCcEEE-EecC----CC--cEEEEecCCCceeEEecC----CCCCeeEEEe
Q 042434 421 DVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA-SGSE----NS--QIYIWNRRNSKPIEILSG----HSMTVNCVSW 489 (517)
Q Consensus 421 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~----dg--~i~iwd~~~~~~~~~~~~----h~~~v~~v~~ 489 (517)
|+.++ ....+....-. +.... .+|++.|+ +++. .+ .|+..++..+.....+.. .......+.|
T Consensus 350 ~~~~~--~~~~lT~g~~~---v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~ 423 (740)
T 4a5s_A 350 QIDKK--DCTFITKGTWE---VIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSF 423 (740)
T ss_dssp ETTCS--SCEESCCSSSC---EEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEE
T ss_pred ECCCC--ceEecccCCEE---EEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEE
Confidence 88764 22233322222 22211 23455444 4443 23 455556554444334432 3467889999
Q ss_pred cCCCCcEEEEeeCC--CcEEEeCCCCCC
Q 042434 490 NPKRPKMLASASDD--HTIRIWGPCQSS 515 (517)
Q Consensus 490 ~~~~~~~l~s~~~d--g~v~iw~~~~~~ 515 (517)
+|++..++++.+.. ..+.+++..+++
T Consensus 424 S~dg~~~~~~~s~~~~p~~~l~~~~~~~ 451 (740)
T 4a5s_A 424 SKEAKYYQLRCSGPGLPLYTLHSSVNDK 451 (740)
T ss_dssp CTTSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred CCCCCEEEEEeCCCCCCEEEEEECCCCc
Confidence 99995455555442 356777766543
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.81 E-value=2.8e-17 Score=154.20 Aligned_cols=243 Identities=12% Similarity=0.069 Sum_probs=179.0
Q ss_pred CCCEEEEEECCCCCeEEEEeCC------------------------CeEEEEECCCCcEEEEeC-CCCCceEEEEEeCCC
Q 042434 267 QNPVSFVAWSPDDTKLLTCGNA------------------------EVLKLWDVETGICKHTFG-DHGFIVSSCAWFPDS 321 (517)
Q Consensus 267 ~~~v~~l~~s~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~ 321 (517)
-+.+.+++++|+|+++++...+ ++|.+||..+++....+. .+-..+..++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999888777 479999999999887765 344578999999999
Q ss_pred CeEEEeeCCCceeEEEEeCCCC--eeEeee--------CcCCCceEEEEEcc-CCCEEEEEe-CCCcEEEEECCCceEEe
Q 042434 322 KRLVCGSSDTEKGIFMCDCDGN--EIKAWR--------GTRIPKVLDLAVTP-DGENLISVL-SDKDIRILNLGTYAERV 389 (517)
Q Consensus 322 ~~l~~~~~d~~v~i~~~~~~~~--~~~~~~--------~~~~~~i~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~ 389 (517)
+.+++...++. |+.|+..+. .+..+. ..+......++++| ++..+++.+ .++.|++||........
T Consensus 103 ~l~v~d~~~~~--v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~ 180 (329)
T 3fvz_A 103 NYWVTDVALHQ--VFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQ 180 (329)
T ss_dssp CEEEEETTTTE--EEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEE
T ss_pred CEEEEECCCCE--EEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEE
Confidence 98888777777 889998876 444442 12333688999999 788877776 68999999955443332
Q ss_pred ec-----------cCCCeeEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC------CC
Q 042434 390 IS-----------EEHPITSLSVSVD-CKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL------DG 451 (517)
Q Consensus 390 ~~-----------~~~~i~~~~~s~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~------~~ 451 (517)
.. ....+..++++|+ +..+++...++.|++||..++ .....+........ +..+.++| +|
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~-~~~~~~~pg~~~~~~g 258 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRN-VFAISYIPGFLFAVNG 258 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTC-EEEEEEETTEEEEEEC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCC-cceeeecCCEEEEeCC
Confidence 22 1123789999998 666777778899999999744 44444432221111 22334466 33
Q ss_pred cEEEEecCCCcEEEEecCCCceeEEec---CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 452 TFIASGSENSQIYIWNRRNSKPIEILS---GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 452 ~~l~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
+..++...+..|++||..+++.+..+. ++...+.+|+++|+| .++++...++.|++|++...
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEEC
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCcc
Confidence 333333445689999999999998873 677789999999999 89999999999999998643
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=1.3e-16 Score=146.66 Aligned_cols=243 Identities=12% Similarity=0.133 Sum_probs=178.1
Q ss_pred cccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec------cCCCCEEEEEE-CCCCCeEEEEeC-CCeE
Q 042434 220 EHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR------SHQNPVSFVAW-SPDDTKLLTCGN-AEVL 291 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~------~h~~~v~~l~~-s~~~~~l~s~~~-dg~i 291 (517)
+|-..+.+++++++|+++++.+.++.|.+|+.. +. ....+. ++...+..+++ .+++.++++... ++.|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~---~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GR---FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SC---EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-Cc---EEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence 566789999999999988888889999999975 32 223332 24467899999 577776666643 8899
Q ss_pred EEEECCCCcEEEEeCC-CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC-cCCCceEEEEEccCCCEEE
Q 042434 292 KLWDVETGICKHTFGD-HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG-TRIPKVLDLAVTPDGENLI 369 (517)
Q Consensus 292 ~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~ 369 (517)
.+|| .+++.+..+.. +...+.+++++|+++.+++...++. |+.|+..+.....+.. .....+..++++++|+.++
T Consensus 103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~--i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMR--VIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp EEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTE--EEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred EEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCE--EEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 9999 57777776643 3467899999999998777777777 8889988776665543 2334689999999999877
Q ss_pred EEeCCCcEEEEECCCceEEeecc---CCCeeEEEEcCCCCEEEEEeCCC-eEEEEEcCCCCccceEEeCcccCceEEEee
Q 042434 370 SVLSDKDIRILNLGTYAERVISE---EHPITSLSVSVDCKNFIVNLNSQ-EIHMWDVAGKWEKPFKYTGHSQNKYVIRSC 445 (517)
Q Consensus 370 ~~~~dg~i~i~d~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~ 445 (517)
+...++.|++||........... ...+..++++++|+.+++...++ .|.+||..+ .....+..+..... ...+
T Consensus 180 ~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~-~~~i 256 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG--QLISALESKVKHAQ-CFDV 256 (286)
T ss_dssp EEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS--CEEEEEEESSCCSC-EEEE
T ss_pred EECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC--CEEEEEcccCCCCc-ceeE
Confidence 77789999999986554333322 25688999999998888887776 999999654 33344433322211 3345
Q ss_pred cCCCCCcEEEEecCCCcEEEEecCCCce
Q 042434 446 FGGLDGTFIASGSENSQIYIWNRRNSKP 473 (517)
Q Consensus 446 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 473 (517)
.++|+|+++++ +.|+.|++|+.....+
T Consensus 257 ~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 257 ALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp EEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred EECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 55889987777 5689999999865443
No 173
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=2e-17 Score=156.65 Aligned_cols=257 Identities=11% Similarity=-0.011 Sum_probs=170.3
Q ss_pred CCCcccccCCCcccEEEecccc-CcEEEEEECCCCCEEE-EeeCCCcEEEEEecCCCeeeEEEEeccC------CCCEEE
Q 042434 201 EDHCCGRDQIPTETVQILTEHK-NEVWFVQFSNNGEYLA-SSSSDCSAIIWKVLEDSKLTLKHTLRSH------QNPVSF 272 (517)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l~~h~-~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~h------~~~v~~ 272 (517)
++....++....+....+..+. ..+..++|+|+|++++ ++..++.|.+||..++. ....+..+ ...+.+
T Consensus 20 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~---~~~~~~~~~~~~~~~~~~~~ 96 (349)
T 1jmx_B 20 PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK---NTFHANLSSVPGEVGRSMYS 96 (349)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE---EEEEEESCCSTTEEEECSSC
T ss_pred CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc---EEEEEEcccccccccccccc
Confidence 3444455655666677766543 2577899999998665 55578999999997653 33333322 223788
Q ss_pred EEECCCCCeEEEEeCC------------CeEEEEECCCCcE---EEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE
Q 042434 273 VAWSPDDTKLLTCGNA------------EVLKLWDVETGIC---KHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337 (517)
Q Consensus 273 l~~s~~~~~l~s~~~d------------g~i~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~ 337 (517)
++|+|||+++++++.+ +.|.+||+.+++. +..+. +...+.+++|+|+++ +++++.+ ++.
T Consensus 97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~~----i~~ 170 (349)
T 1jmx_B 97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGPD----IYK 170 (349)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESSS----EEE
T ss_pred eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccCc----EEE
Confidence 9999999999998865 8999999988543 33332 334688999999999 6555433 889
Q ss_pred EeCCCCee-EeeeCcCCC-----------------------ceEEEEEccCCCE-----------EEEEeCCCcEEEEEC
Q 042434 338 CDCDGNEI-KAWRGTRIP-----------------------KVLDLAVTPDGEN-----------LISVLSDKDIRILNL 382 (517)
Q Consensus 338 ~~~~~~~~-~~~~~~~~~-----------------------~i~~~~~~~~~~~-----------l~~~~~dg~i~i~d~ 382 (517)
||..+... ..+...... ....+++++++.. +.....++.+.+++.
T Consensus 171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
T 1jmx_B 171 MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF 250 (349)
T ss_dssp ECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred EeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc
Confidence 99875443 333222100 2344666655421 112223344444443
Q ss_pred CCceEEeeccCCCeeEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCC
Q 042434 383 GTYAERVISEEHPITSLSVSV-DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS 461 (517)
Q Consensus 383 ~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 461 (517)
......+..++++| ++++++++ ++.|.+||+.+. .....+..... +..+.++|+|++|++++.++
T Consensus 251 -------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~~~~----~~~~~~s~dg~~l~~~~~~~ 316 (349)
T 1jmx_B 251 -------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR-KLIKAANLDHT----YYCVAFDKKGDKLYLGGTFN 316 (349)
T ss_dssp -------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT-EEEEEEECSSC----CCEEEECSSSSCEEEESBSS
T ss_pred -------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC-eEEEEEcCCCC----ccceEECCCCCEEEEecCCC
Confidence 12455788999999 99999888 889999999876 44344432221 23455689999888888899
Q ss_pred cEEEEecCCCceeEEecCC
Q 042434 462 QIYIWNRRNSKPIEILSGH 480 (517)
Q Consensus 462 ~i~iwd~~~~~~~~~~~~h 480 (517)
.|++||..+++.+..+..+
T Consensus 317 ~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 317 DLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEEETTTTEEEEEEECS
T ss_pred eEEEEeccccceeeeeecC
Confidence 9999999999988887654
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.79 E-value=3.3e-17 Score=155.09 Aligned_cols=256 Identities=13% Similarity=0.133 Sum_probs=173.8
Q ss_pred CcEEEEEECCCCCEEEEee---------CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---C-
Q 042434 223 NEVWFVQFSNNGEYLASSS---------SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---E- 289 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~---------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g- 289 (517)
..+..+++ ||++++... .++.|.+|++.++... .+ ..+..++|+|||++|+.++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----~l----~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR----FI----ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE----EE----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE----Ec----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 45666777 888887642 2567899998765421 22 468899999999999987654 3
Q ss_pred -eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCC------------------C-------ceeEEEEeCCCC
Q 042434 290 -VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD------------------T-------EKGIFMCDCDGN 343 (517)
Q Consensus 290 -~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d------------------~-------~v~i~~~~~~~~ 343 (517)
.|.+|++.+++.......+ . +..++|+|||+.|+.++.+ | ...++.|+..+.
T Consensus 85 ~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred ceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence 4888899888766554333 3 8999999999999888743 1 345999999876
Q ss_pred ee-EeeeCcCCCceEEEEEccCCCEEEEEeCCC---------cEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEe
Q 042434 344 EI-KAWRGTRIPKVLDLAVTPDGENLISVLSDK---------DIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNL 412 (517)
Q Consensus 344 ~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~ 412 (517)
.. ..+.. . .+..+.|+|+| .++++..++ .|.++| ++. .....+ ..+.. ++|+|+.++.++
T Consensus 163 ~~~~~l~~-~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~--~spdg~~l~~~~ 233 (347)
T 2gop_A 163 EVIEEFEK-P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYA--VDSDGERILLYG 233 (347)
T ss_dssp EEEEEEEE-E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEE--EEECSSCEEEEE
T ss_pred eEEeeecC-C--CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-cceee--ECCCCCEEEEEE
Confidence 65 55444 2 67889999999 777775542 455556 444 333333 34443 499999988877
Q ss_pred CC--------CeEEEEEcCCCCccceEEeCcccCceEEEe-ecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCC
Q 042434 413 NS--------QEIHMWDVAGKWEKPFKYTGHSQNKYVIRS-CFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMT 483 (517)
Q Consensus 413 ~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~ 483 (517)
.+ ..|.+|| ++ ........+.. .+.. ..|+ ++ ++++++.++.+++| +.+++....+ .+.+.
T Consensus 234 ~~~~~~~~~~~~l~~~d--~~-~~~~l~~~~~~---~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~ 303 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD--GK-EVMGILDEVDR---GVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHW 303 (347)
T ss_dssp CCSSSCCCSSCEEEEEC--SS-CEEESSTTCCS---EEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSE
T ss_pred ccccCCccccceEEEEC--CC-ceEeccccCCc---ccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCe
Confidence 54 3688888 32 22222222222 2332 5567 88 89999999999999 8766654444 45788
Q ss_pred eeEEEecCCCCcEEEEeeCCCcE-EEeCCC
Q 042434 484 VNCVSWNPKRPKMLASASDDHTI-RIWGPC 512 (517)
Q Consensus 484 v~~v~~~~~~~~~l~s~~~dg~v-~iw~~~ 512 (517)
|.+++|+| . ++++++.++.. .+|.+.
T Consensus 304 v~~~~~s~-~--~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 304 IMGFDVDE-I--VVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEESS-S--EEEEEECSSSCCEEEEES
T ss_pred EEeeeeeC-c--EEEEEcCCCChHHheEeC
Confidence 99999999 4 67777766654 666554
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=1.4e-17 Score=160.40 Aligned_cols=252 Identities=13% Similarity=0.058 Sum_probs=172.3
Q ss_pred EEEEeccCCCCEEE-----EEECCCCCeEEEEeC-CC--eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCC
Q 042434 259 LKHTLRSHQNPVSF-----VAWSPDDTKLLTCGN-AE--VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD 330 (517)
Q Consensus 259 ~~~~~~~h~~~v~~-----l~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d 330 (517)
....+..|...... .+|+|||++|+.++. +| .|.+||+.+++.......+...+..+.|+|||+.|++++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 34566777766666 889999999998887 66 48889999998877766666666677899999999999988
Q ss_pred CceeEEEEeCCCCeeEeeeCcCCCceEEE--EEccCCCEEEEEe----------------------CCCcEEEEECCCce
Q 042434 331 TEKGIFMCDCDGNEIKAWRGTRIPKVLDL--AVTPDGENLISVL----------------------SDKDIRILNLGTYA 386 (517)
Q Consensus 331 ~~v~i~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~~----------------------~dg~i~i~d~~~~~ 386 (517)
+. ++.|+..+.........+...+... .++++++.++... .+..|.+||+.+++
T Consensus 102 ~~--l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 102 RN--LMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp TE--EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred Ce--EEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence 77 9999998766554443333344333 4589999887432 34679999999887
Q ss_pred -EEeeccCCCeeEEEEcC-CCCEEEEEeCC------CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec
Q 042434 387 -ERVISEEHPITSLSVSV-DCKNFIVNLNS------QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS 458 (517)
Q Consensus 387 -~~~~~~~~~i~~~~~s~-~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 458 (517)
.....+...+..+.|+| +|+.++....+ ..|.++|..+. ....+..+... ..+....|+|||+.|+..+
T Consensus 180 ~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~-~~~~~~~~spdg~~l~~~~ 256 (388)
T 3pe7_A 180 STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHAEG-ESCTHEFWVPDGSALVYVS 256 (388)
T ss_dssp EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCCTT-EEEEEEEECTTSSCEEEEE
T ss_pred eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCCCC-cccccceECCCCCEEEEEe
Confidence 44445666789999999 99998877653 36888887654 22333332211 2244556799999776544
Q ss_pred C-CC----cEEEEecCCCce--eEEecCCCC---CeeEEEecCCCCcEEEEe--------eCCCcEEEeCCCCCC
Q 042434 459 E-NS----QIYIWNRRNSKP--IEILSGHSM---TVNCVSWNPKRPKMLASA--------SDDHTIRIWGPCQSS 515 (517)
Q Consensus 459 ~-dg----~i~iwd~~~~~~--~~~~~~h~~---~v~~v~~~~~~~~~l~s~--------~~dg~v~iw~~~~~~ 515 (517)
. ++ .|++||+.+++. +..+.++.. ....++|+|+|..++++. +.+..|++|++.+++
T Consensus 257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 3 22 399999999874 333333110 122347999995444433 456789999998764
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.78 E-value=6.6e-15 Score=135.95 Aligned_cols=283 Identities=11% Similarity=-0.008 Sum_probs=194.7
Q ss_pred eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 042434 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE 297 (517)
Q Consensus 218 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 297 (517)
+..+...+.+++++++|++.++...++.|.+|+.. + .... .....+...+.++++++++...++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~-~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-G-KITE-YPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-CEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C-CeEE-ecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 44566789999999999987776667899999976 3 2221 1223355789999999999988887778899999986
Q ss_pred CCcEE-EEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434 298 TGICK-HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKD 376 (517)
Q Consensus 298 ~~~~~-~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 376 (517)
++.. .........+.++++.+++..+++...++. ++.++..+.............+..+++.++|+..++...++.
T Consensus 87 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~--i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 163 (299)
T 2z2n_A 87 -GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNR--IGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNA 163 (299)
T ss_dssp -SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE--EEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred -CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCce--EEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence 4432 222234567899999999988777766666 888888544332222223346889999999988777777889
Q ss_pred EEEEECCCceEEe---eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcE
Q 042434 377 IRILNLGTYAERV---ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTF 453 (517)
Q Consensus 377 i~i~d~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 453 (517)
|..||. ++.... ......+..+++++++..+++...++.|..||. ++.. ..+.... ....+..+.++++|++
T Consensus 164 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--~~~~~~~-~~~~~~~i~~~~~g~l 238 (299)
T 2z2n_A 164 IGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI--TEFKIPT-PNARPHAITAGAGIDL 238 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--EEEECSS-TTCCEEEEEECSTTCE
T ss_pred EEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE--EEEECCC-CCCCceeEEECCCCCE
Confidence 999998 554222 223456889999999987777667889999998 4322 2221111 1122445555889987
Q ss_pred EEEecCCCcEEEEecCCCceeEE-ecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 454 IASGSENSQIYIWNRRNSKPIEI-LSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 454 l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
.++...++.|..||. +++.... +..+...+.++++ +++ .++++.+ .+.+..+++.+++
T Consensus 239 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g-~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 239 WFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGE-TIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSS-CEEEEET-TTEEEEEEEC---
T ss_pred EEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCC-CEEEEec-CCcEEEEEcCccc
Confidence 777667889999998 4543322 3345578999999 888 5665544 5667777776543
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=4.8e-17 Score=168.10 Aligned_cols=244 Identities=11% Similarity=0.039 Sum_probs=175.5
Q ss_pred EeccCCCCEEEEEECCCCCeEEEE--eCCCeEEEEECCCCcEEEEeCCCCCceE---------EEEEe--CCCCe-EEEe
Q 042434 262 TLRSHQNPVSFVAWSPDDTKLLTC--GNAEVLKLWDVETGICKHTFGDHGFIVS---------SCAWF--PDSKR-LVCG 327 (517)
Q Consensus 262 ~~~~h~~~v~~l~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~---------~i~~~--~~~~~-l~~~ 327 (517)
.+.+|...+..++|++++-++++. +.++...||....+.....+..+...+. ...|+ |||+. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 356788999999999887666666 5588999999655555666766666655 56666 99998 7766
Q ss_pred eCCCceeEEEEeCC--C-CeeEeeeCc----CCCceEEEEEccCCCEEEEEeCC----------CcEEEEECCC------
Q 042434 328 SSDTEKGIFMCDCD--G-NEIKAWRGT----RIPKVLDLAVTPDGENLISVLSD----------KDIRILNLGT------ 384 (517)
Q Consensus 328 ~~d~~v~i~~~~~~--~-~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~------ 384 (517)
+.. ...||.++.. + .....+... +...+..++|+|||+.|++++.+ ..|++||+.+
T Consensus 98 ~~~-~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 98 HFG-DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp BTT-TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred ECC-CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 543 4459999987 4 444444442 33468899999999999988876 5899999988
Q ss_pred ce-EEee-ccCCCeeEEEEcCCCCEEEEEeCC--------CeEEEEEcCC-CC-ccceEEe-CcccCceEEEeecCCCCC
Q 042434 385 YA-ERVI-SEEHPITSLSVSVDCKNFIVNLNS--------QEIHMWDVAG-KW-EKPFKYT-GHSQNKYVIRSCFGGLDG 451 (517)
Q Consensus 385 ~~-~~~~-~~~~~i~~~~~s~~~~~l~~~~~d--------~~i~~~d~~~-~~-~~~~~~~-~~~~~~~~i~~~~~s~~~ 451 (517)
+. .... .+...+..++|+|||++|+.++.+ ..|++||+.. +. .....+. ++... +....|+|||
T Consensus 177 ~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~---~~~~~~spdg 253 (662)
T 3azo_A 177 SAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA---IAQAEWAPDG 253 (662)
T ss_dssp GGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC---EEEEEECTTS
T ss_pred CceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce---EcceEECCCC
Confidence 55 4444 445677889999999999987754 3799999973 31 1222332 22232 4455679999
Q ss_pred cEEEEecCCC--cEEEEecCCCceeEEecCCCCC--------eeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 452 TFIASGSENS--QIYIWNRRNSKPIEILSGHSMT--------VNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 452 ~~l~~~~~dg--~i~iwd~~~~~~~~~~~~h~~~--------v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
+++++++.+| .|++||..+++.......+... +.+++|+|++ .++++++. +.+++|.+
T Consensus 254 ~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 254 SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEE
T ss_pred eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEE
Confidence 9888888888 6777787777765544433322 5688999998 78899988 99999943
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.77 E-value=4.3e-16 Score=162.00 Aligned_cols=247 Identities=11% Similarity=0.029 Sum_probs=174.9
Q ss_pred CCCCEEEEEECCCCCeEEEEeCCC-----eEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc--------
Q 042434 266 HQNPVSFVAWSPDDTKLLTCGNAE-----VLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE-------- 332 (517)
Q Consensus 266 h~~~v~~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~-------- 332 (517)
|...+..++|||||++||.++.++ .|++||+.+++....... ...+..++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccc
Confidence 444688999999999998775543 899999999987653322 223667999999999999887653
Q ss_pred ------eeEEEEeCCCCe---eEeeeCc-CCCceEEEEEccCCCEEEEEeC-----CCcEEEEECCC------c--e-EE
Q 042434 333 ------KGIFMCDCDGNE---IKAWRGT-RIPKVLDLAVTPDGENLISVLS-----DKDIRILNLGT------Y--A-ER 388 (517)
Q Consensus 333 ------v~i~~~~~~~~~---~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~--~-~~ 388 (517)
..|+.|+..+.. ...+... +...+..+.|+|||++++.++. +..|++||+.+ + . ..
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 348899987644 2222222 2335788999999999887765 56899999976 4 2 33
Q ss_pred eeccCCCeeEEEEcCCCCEEEEEeCC----CeEEEEEcCCCCc-cceEEeCcccCceEEEeecCCCCCcEEEEecCCC--
Q 042434 389 VISEEHPITSLSVSVDCKNFIVNLNS----QEIHMWDVAGKWE-KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS-- 461 (517)
Q Consensus 389 ~~~~~~~i~~~~~s~~~~~l~~~~~d----~~i~~~d~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-- 461 (517)
...+...+.. .|+|+|+.++..+.. +.|.+||+.+... ....+..+... ..+..+.+++++.++++...|+
T Consensus 282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK-DVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CEEEEEEEETTTEEEEEEEETTEE
T ss_pred eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC-CeEEEEEEEcCCEEEEEEEECCEE
Confidence 3344444443 588999988877653 3699999876521 22444444332 2344444567788888888888
Q ss_pred cEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC---CCcEEEeCCCCCC
Q 042434 462 QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD---DHTIRIWGPCQSS 515 (517)
Q Consensus 462 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~---dg~v~iw~~~~~~ 515 (517)
.|++||+.+|+.+..+..+.+.+..++++|++..++++.+. .+.|+.||+.+++
T Consensus 360 ~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 46777887888888888888889999999998555555443 5789999998765
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=3.7e-16 Score=146.53 Aligned_cols=244 Identities=11% Similarity=0.075 Sum_probs=173.5
Q ss_pred ccCcEEEEEECCCCCEEEEeeCC------------------------CcEEEEEecCCCeeeEEEEec-cCCCCEEEEEE
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSD------------------------CSAIIWKVLEDSKLTLKHTLR-SHQNPVSFVAW 275 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~d------------------------g~i~iw~~~~~~~~~~~~~~~-~h~~~v~~l~~ 275 (517)
--+.|.+++++|+|+++++.+.+ +.|.+||..++.. ...+. ++-.....+++
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~---~~~~~~~~~~~p~gia~ 98 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI---LQSSGKNLFYLPHGLSI 98 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE---EEEECTTTCSSEEEEEE
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE---EeccCCCccCCceEEEE
Confidence 35779999999999999888777 4799999865542 23332 44567899999
Q ss_pred CCCCCeEEEEeCCCeEEEEECCCCc-EEEEeC---------CCCCceEEEEEeC-CCCeEEEee-CCCceeEEEEeCCCC
Q 042434 276 SPDDTKLLTCGNAEVLKLWDVETGI-CKHTFG---------DHGFIVSSCAWFP-DSKRLVCGS-SDTEKGIFMCDCDGN 343 (517)
Q Consensus 276 s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---------~~~~~v~~i~~~~-~~~~l~~~~-~d~~v~i~~~~~~~~ 343 (517)
+|+|+++++...++.|++||..... .+..+. .+-..+..++++| ++..+++.+ .++. |+.|+..+.
T Consensus 99 d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~--I~~~~~~g~ 176 (329)
T 3fvz_A 99 DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR--IVQFSPSGK 176 (329)
T ss_dssp CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE--EEEECTTSC
T ss_pred CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe--EEEEcCCCC
Confidence 9999988888889999999985442 455552 3344689999999 777777775 5776 888898877
Q ss_pred eeEeeeCc---------CCCceEEEEEccC-CCEEEEEeCCCcEEEEECCCce-EEee---ccCCCeeEEEEcC------
Q 042434 344 EIKAWRGT---------RIPKVLDLAVTPD-GENLISVLSDKDIRILNLGTYA-ERVI---SEEHPITSLSVSV------ 403 (517)
Q Consensus 344 ~~~~~~~~---------~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~---~~~~~i~~~~~s~------ 403 (517)
.+..+... .......++++|+ +..+++...++.|++||..+++ .... .....+..++++|
T Consensus 177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~ 256 (329)
T 3fvz_A 177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV 256 (329)
T ss_dssp EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEE
T ss_pred EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEe
Confidence 76655422 1224789999998 6677777788899999998655 2222 3445688899999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC
Q 042434 404 DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN 470 (517)
Q Consensus 404 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 470 (517)
+++.+++...+..|.+||..++ .....+............++++|+|.++++...++.|++|++..
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g-~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSG-EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTC-CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCC-eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 3333333334558999998776 44444421111111234455689998889989999999999753
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.75 E-value=9.8e-15 Score=145.46 Aligned_cols=303 Identities=11% Similarity=0.074 Sum_probs=205.9
Q ss_pred cccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEec--CCCeeeEEEEeccCCCCEEEEEEC----C
Q 042434 204 CCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVL--EDSKLTLKHTLRSHQNPVSFVAWS----P 277 (517)
Q Consensus 204 ~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~--~~~~~~~~~~~~~h~~~v~~l~~s----~ 277 (517)
...++....+.+..+.. ...+..+.|||||+++++++.|+.|.+||+. +. +...++... .....++|+ |
T Consensus 179 V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~---~~v~~i~~G-~~P~~ia~s~~~~p 253 (567)
T 1qks_A 179 IALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP---TTVAEIKIG-SEARSIETSKMEGW 253 (567)
T ss_dssp EEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC---CEEEEEECC-SEEEEEEECCSTTC
T ss_pred EEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC---cEeEEEecC-CCCceeEEccccCC
Confidence 44456566667777653 3467799999999999999999999999985 33 334455443 346799999 6
Q ss_pred CCCeEEEEeC-CCeEEEEECCCCcEEEEeCCC-----------CCceEEEEEeCCCCeEEEe-eCCCceeEEEEeCCCCe
Q 042434 278 DDTKLLTCGN-AEVLKLWDVETGICKHTFGDH-----------GFIVSSCAWFPDSKRLVCG-SSDTEKGIFMCDCDGNE 344 (517)
Q Consensus 278 ~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~ 344 (517)
||+++++++. ++++.++|..+.+.+..+... ...+..+..++++..++.. ..+|. |+++|.....
T Consensus 254 DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~--v~~vd~~~~~ 331 (567)
T 1qks_A 254 EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK--ILLVDYTDLN 331 (567)
T ss_dssp TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE--EEEEETTCSS
T ss_pred CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe--EEEEecCCCc
Confidence 9999887765 589999999999988876421 2267888889887655544 44566 8888876532
Q ss_pred -eEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCCceE-Eeecc----CCCeeEEE-EcCCCCEEEEEe--CC
Q 042434 345 -IKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGTYAE-RVISE----EHPITSLS-VSVDCKNFIVNL--NS 414 (517)
Q Consensus 345 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~-~~~~~----~~~i~~~~-~s~~~~~l~~~~--~d 414 (517)
+............++.|+|+|++++++. .++.|.++|+.+++. ..... .++-.... ++|++..+.+.+ .+
T Consensus 332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~ 411 (567)
T 1qks_A 332 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGD 411 (567)
T ss_dssp EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSS
T ss_pred cceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCC
Confidence 2211112223577899999999887665 578999999999872 22221 11112233 578755555443 46
Q ss_pred CeEEEEEcCCC------CccceEEeCcccCceEEEeecCCCCCcEEEEecC-------CCcEEEEecCCC-----c-eeE
Q 042434 415 QEIHMWDVAGK------WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE-------NSQIYIWNRRNS-----K-PIE 475 (517)
Q Consensus 415 ~~i~~~d~~~~------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg~i~iwd~~~~-----~-~~~ 475 (517)
+.|.++|.... ++.+..+.........+. .+|+++++++... .++|.++|+.+. . ...
T Consensus 412 ~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~---~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~ 488 (567)
T 1qks_A 412 DSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIK---THPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFK 488 (567)
T ss_dssp SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE---CCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEE
T ss_pred CeEEEecCCCCCCccccCEEEEEEecCCCCCEEEE---eCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcE
Confidence 89999998762 345555554433322232 3899999998663 359999999876 2 113
Q ss_pred Eec--------CCCCCeeEEEecCCCCcEEEEee----CCCcEEEeCCCCCCC
Q 042434 476 ILS--------GHSMTVNCVSWNPKRPKMLASAS----DDHTIRIWGPCQSSE 516 (517)
Q Consensus 476 ~~~--------~h~~~v~~v~~~~~~~~~l~s~~----~dg~v~iw~~~~~~~ 516 (517)
.+. .....+..+.|+|+|..+++|.. .++.|.|+|.++.+.
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 489 TLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp EECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred EeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence 332 12357899999999976666643 379999999988753
No 181
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.74 E-value=1.1e-15 Score=138.94 Aligned_cols=240 Identities=9% Similarity=-0.003 Sum_probs=170.7
Q ss_pred CEEEEEECCCCCeEE-EEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEe
Q 042434 269 PVSFVAWSPDDTKLL-TCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKA 347 (517)
Q Consensus 269 ~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~ 347 (517)
...+++++++|++++ +.+.++.|.+||..++........+...+.++++.++++.+++.. ++. |+.|+..+.....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~--i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNR--VVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTE--EEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCE--EEEEeCCCceEee
Confidence 678999999998777 547788999999766543322223335678899999998666555 666 8899988876655
Q ss_pred eeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEee--ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 348 WRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI--SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 348 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
+.......+..++++++|+.+++...++.|.+|+..+...... .....+..++++++|+.+++...++.|.+||..+.
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 5434335789999999999777777788999998766542222 22346789999999997777777889999998765
Q ss_pred CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCc
Q 042434 426 WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHT 505 (517)
Q Consensus 426 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~ 505 (517)
...... .... .....+.++++|.++++...++.|.+||............+...+.+++++|+| .++++...++.
T Consensus 182 ~~~~~~-~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~ 256 (270)
T 1rwi_B 182 NQVVLP-FTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR-TVYVADRGNDR 256 (270)
T ss_dssp CEEECC-CSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC-CEEEEEGGGTE
T ss_pred ceEeec-ccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCC-CEEEEECCCCE
Confidence 222111 1111 123445558899888887788999999987654433222334678999999999 68899999999
Q ss_pred EEEeCCCCCCC
Q 042434 506 IRIWGPCQSSE 516 (517)
Q Consensus 506 v~iw~~~~~~~ 516 (517)
|+++++...+.
T Consensus 257 v~~~~~~~~~~ 267 (270)
T 1rwi_B 257 VVKLTSLEHHH 267 (270)
T ss_dssp EEEECCCGGGS
T ss_pred EEEEcCCCccc
Confidence 99999987654
No 182
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=1.3e-16 Score=153.92 Aligned_cols=253 Identities=14% Similarity=0.045 Sum_probs=165.5
Q ss_pred cEEEeccccCcEE-EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEE-------------------E
Q 042434 214 TVQILTEHKNEVW-FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSF-------------------V 273 (517)
Q Consensus 214 ~~~~l~~h~~~v~-~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~-------------------l 273 (517)
....+..+...+. .+.|||||++|+.++.++.|++|++.++... .....+...... +
T Consensus 71 ~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ 147 (396)
T 3c5m_A 71 QAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ---VIYTVDEEWKGYGTWVANSDCTKLVGIEILKR 147 (396)
T ss_dssp EEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE---EEEECCTTEEEEEEEEECTTSSEEEEEEEEGG
T ss_pred cEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE---EEEecccccCCCCCEEEeccCCcccccccccc
Confidence 3444444444433 4789999999999999999999998765422 222223332222 3
Q ss_pred EECCCCCeEEEE-----eCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeC-CCCeEEEeeCCCc----eeEEEEeCCCC
Q 042434 274 AWSPDDTKLLTC-----GNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTE----KGIFMCDCDGN 343 (517)
Q Consensus 274 ~~s~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~----v~i~~~~~~~~ 343 (517)
.|+|+++.++.+ ..+..|.+||+.+++..... .+...+..+.|+| +++.|+..+.++. ..|+.++..+.
T Consensus 148 ~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (396)
T 3c5m_A 148 DWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS 226 (396)
T ss_dssp GCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC
T ss_pred ccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC
Confidence 568888877654 35668999999998866554 5667789999999 7887777665443 45999998876
Q ss_pred eeEeeeCcC-CCceEEEEEccCCCEEEEEeCC-----CcEEEEECCCceEEeeccCCCeeEEEEcC-CCCEEEEEe----
Q 042434 344 EIKAWRGTR-IPKVLDLAVTPDGENLISVLSD-----KDIRILNLGTYAERVISEEHPITSLSVSV-DCKNFIVNL---- 412 (517)
Q Consensus 344 ~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~---- 412 (517)
....+.... ...+..+.|+|+|+.|+.++.+ +.|++||+.++............ +.|+| +|+.+++++
T Consensus 227 ~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 227 NVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp CCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECCC-
T ss_pred ceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCCcc
Confidence 655544432 2357889999999987776544 44999999887633322222233 89999 999888754
Q ss_pred ------------CCCeEEEEEcCCCCccceEEeCcccCce--------EEEeecCCCCCcEEEEecC-CCc--EEEEecC
Q 042434 413 ------------NSQEIHMWDVAGKWEKPFKYTGHSQNKY--------VIRSCFGGLDGTFIASGSE-NSQ--IYIWNRR 469 (517)
Q Consensus 413 ------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~--------~i~~~~~s~~~~~l~~~~~-dg~--i~iwd~~ 469 (517)
.+..|++||+.++. . ..+..+..... ......|+|||+.|+.++. ++. |+.+++.
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~ 383 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAKS-A-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVP 383 (396)
T ss_dssp ---------CCCCCCEEEEEETTTTB-C-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred eeeccccccccCCCCcEEEEecccCc-e-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEc
Confidence 34689999997652 2 23333322100 0123345899998877664 444 5555655
Q ss_pred CCce
Q 042434 470 NSKP 473 (517)
Q Consensus 470 ~~~~ 473 (517)
++..
T Consensus 384 ~~~~ 387 (396)
T 3c5m_A 384 ESYK 387 (396)
T ss_dssp TTCC
T ss_pred cccc
Confidence 5543
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=2.2e-15 Score=139.13 Aligned_cols=238 Identities=9% Similarity=0.055 Sum_probs=168.3
Q ss_pred eccCCCCEEEEEECCCCC-eEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC
Q 042434 263 LRSHQNPVSFVAWSPDDT-KLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341 (517)
Q Consensus 263 ~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~ 341 (517)
+..+.....+++|+|+++ +++++..++.|..||..++ ...+..+...+.+++++|+|+++++...++. |+.|+..
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~--i~~~d~~ 98 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR--LERQREP 98 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTE--EEEECST
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCe--EEEEcCC
Confidence 344566788999999998 7778888999999999887 5666667788999999999998777766666 8999985
Q ss_pred CCeeEeeeCc----CCCceEEEEEccCCCEEEE----Ee-------------CCCcEEEEECCCceEEeeccCCCeeEEE
Q 042434 342 GNEIKAWRGT----RIPKVLDLAVTPDGENLIS----VL-------------SDKDIRILNLGTYAERVISEEHPITSLS 400 (517)
Q Consensus 342 ~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~~i~~~~ 400 (517)
+.....+... ....+..++++|+|+.+++ ++ ..+.|..++.................++
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~ 178 (296)
T 3e5z_A 99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLA 178 (296)
T ss_dssp TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEE
T ss_pred CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEE
Confidence 4444333221 1224678999999998887 32 1346777776622244445556678999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCCcc---ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEe
Q 042434 401 VSVDCKNFIVNLNSQEIHMWDVAGKWEK---PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEIL 477 (517)
Q Consensus 401 ~s~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 477 (517)
|+|+++.+++.+.++.|.+||+...... ...+.... .....++++++|++.++. ++.|.+||.. ++.+..+
T Consensus 179 ~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~---~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~ 252 (296)
T 3e5z_A 179 FLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEP---GKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRV 252 (296)
T ss_dssp ECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSS---SCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEE
T ss_pred ECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCC---CCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEE
Confidence 9999999977777899999998622122 12221111 112345558899876666 7889999986 8888888
Q ss_pred cCCCCCeeEEEe-cCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 478 SGHSMTVNCVSW-NPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 478 ~~h~~~v~~v~~-~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
..+.. +++++| .|++ ..|+.++.++ +.-+++.+
T Consensus 253 ~~~~~-~~~~~f~~~d~-~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 253 LTPQT-TSNLCFGGPEG-RTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp ECSSC-CCEEEEESTTS-CEEEEEETTE-EEEEECSC
T ss_pred ECCCC-ceeEEEECCCC-CEEEEEcCCe-EEEEEccc
Confidence 87777 999999 5887 5677777765 44445444
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.73 E-value=3.3e-16 Score=162.37 Aligned_cols=280 Identities=13% Similarity=0.026 Sum_probs=178.9
Q ss_pred CCCCEEEEeeCCC---cEEEEEecC-CCeeeEEEEe----ccCCCCEEEEEECCCCCeEEE-----EeCCCeEEEEECCC
Q 042434 232 NNGEYLASSSSDC---SAIIWKVLE-DSKLTLKHTL----RSHQNPVSFVAWSPDDTKLLT-----CGNAEVLKLWDVET 298 (517)
Q Consensus 232 ~~~~~l~t~~~dg---~i~iw~~~~-~~~~~~~~~~----~~h~~~v~~l~~s~~~~~l~s-----~~~dg~i~iwd~~~ 298 (517)
|+|++++....++ .-.+|.... +.....+... .+|...+..++|||||++||. |+.+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 5777777665443 345565432 2222222111 235557999999999999983 34456899999999
Q ss_pred CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc-----------eeEEEEeCCCCe---eEeeeC-cCCCceEEEEEcc
Q 042434 299 GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE-----------KGIFMCDCDGNE---IKAWRG-TRIPKVLDLAVTP 363 (517)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~-----------v~i~~~~~~~~~---~~~~~~-~~~~~i~~~~~~~ 363 (517)
++.+..-.........++|+|||+.|+.++.+.. -.|+.|+..+.. ...+.. .+...+..+.|+|
T Consensus 157 g~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp 236 (695)
T 2bkl_A 157 GEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR 236 (695)
T ss_dssp CCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT
T ss_pred CCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC
Confidence 9864110111111267899999999999887653 348899987544 122222 2224688999999
Q ss_pred CCCEEEEEeCCC----cEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeC----CCeEEEEEcCCCCc-cceEEe
Q 042434 364 DGENLISVLSDK----DIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLN----SQEIHMWDVAGKWE-KPFKYT 433 (517)
Q Consensus 364 ~~~~l~~~~~dg----~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~~-~~~~~~ 433 (517)
||++++.++.++ .|+++|..++. .....+...+....+ ++|+ ++..+. ++.|.+||+.+... ....+.
T Consensus 237 DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~ 314 (695)
T 2bkl_A 237 DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIV 314 (695)
T ss_dssp TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEE
T ss_pred CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEe
Confidence 999988877666 67777765544 344444445555555 6666 555443 57899999876521 123333
Q ss_pred CcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC-CCceeEEecCC-CCCeeEEEecCCCCcEEEEee---CCCcEEE
Q 042434 434 GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR-NSKPIEILSGH-SMTVNCVSWNPKRPKMLASAS---DDHTIRI 508 (517)
Q Consensus 434 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~v~~~~~~~~~l~s~~---~dg~v~i 508 (517)
.+... ..+..+.++ ++.++++...|+..++|.+. +++....+..+ .+.+..++++|++..++++.+ ..++|++
T Consensus 315 ~~~~~-~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~ 392 (695)
T 2bkl_A 315 PEDSS-ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK 392 (695)
T ss_dssp CCCSS-CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred cCCCC-CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 33222 223333334 67888999999988887654 46666667655 677888999999854444444 3578999
Q ss_pred eCCCCCC
Q 042434 509 WGPCQSS 515 (517)
Q Consensus 509 w~~~~~~ 515 (517)
||+.+++
T Consensus 393 ~d~~~g~ 399 (695)
T 2bkl_A 393 TSVSTGK 399 (695)
T ss_dssp EETTTCC
T ss_pred EECCCCc
Confidence 9998765
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.73 E-value=2e-15 Score=156.94 Aligned_cols=243 Identities=14% Similarity=0.109 Sum_probs=166.1
Q ss_pred cccCcEEEEEECCCCCEEEEeeCCC-----cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCe----
Q 042434 220 EHKNEVWFVQFSNNGEYLASSSSDC-----SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEV---- 290 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~~l~t~~~dg-----~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~---- 290 (517)
+|...+..++|||||++||.++.++ .|++||+.++..... ++.. ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLER--VKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEE--ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cccC--cccceEEEEeCCCEEEEEEECCccccc
Confidence 3555789999999999999876543 899999987643321 2221 22667999999999999888766
Q ss_pred ------------EEEEECCCCcE--EEEeC--CCCCceEEEEEeCCCCeEEEeeCCC---ceeEEEEeCCC------C--
Q 042434 291 ------------LKLWDVETGIC--KHTFG--DHGFIVSSCAWFPDSKRLVCGSSDT---EKGIFMCDCDG------N-- 343 (517)
Q Consensus 291 ------------i~iwd~~~~~~--~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~---~v~i~~~~~~~------~-- 343 (517)
|++|++.++.. ...+. .+...+..+.|+|||++|+.++.++ ...+++++..+ .
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence 99999988762 22233 3456688999999999998876532 33499999864 3
Q ss_pred eeEeeeCcCCCceEEEEEccCCCEEEEEeCC----CcEEEEECCCce----EEeeccCC--CeeEEEEcCCCCEEEEEeC
Q 042434 344 EIKAWRGTRIPKVLDLAVTPDGENLISVLSD----KDIRILNLGTYA----ERVISEEH--PITSLSVSVDCKNFIVNLN 413 (517)
Q Consensus 344 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~----~~~~~~~~--~i~~~~~s~~~~~l~~~~~ 413 (517)
....+..+.. .+.. .|+++|+.++..+.. +.|.+||+.+.. .....+.. .+..++|++++..+++...
T Consensus 278 ~~~~l~~~~~-~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~ 355 (710)
T 2xdw_A 278 KWVKLIDNFE-GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH 355 (710)
T ss_dssp CCEEEECSSS-SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred ceEEeeCCCC-cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence 3444444432 3333 588999988776653 369999998763 33444433 5778899877777778887
Q ss_pred CCe--EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe----cCCCcEEEEecCCCc
Q 042434 414 SQE--IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG----SENSQIYIWNRRNSK 472 (517)
Q Consensus 414 d~~--i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~ 472 (517)
++. |.+||+.++ .....+..+.. .+..+.++|++..++.. ...++|+.||+.+++
T Consensus 356 ~g~~~l~~~~~~~g-~~~~~l~~~~~---~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 356 DVKNTLQLHDLATG-ALLKIFPLEVG---SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTEEEEEEEETTTC-CEEEEECCCSS---EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEEEEEEEECCCC-CEEEecCCCCc---eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 874 566776444 33344444422 24445567888766533 234789999998877
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.72 E-value=4.7e-16 Score=161.20 Aligned_cols=243 Identities=11% Similarity=-0.012 Sum_probs=164.9
Q ss_pred cccCcEEEEEECCCCCEEEE-----eeCCCcEEEEEecCCCeeeEEEEeccCCCCE--EEEEECCCCCeEEEEeCCCe--
Q 042434 220 EHKNEVWFVQFSNNGEYLAS-----SSSDCSAIIWKVLEDSKLTLKHTLRSHQNPV--SFVAWSPDDTKLLTCGNAEV-- 290 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~~l~t-----~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v--~~l~~s~~~~~l~s~~~dg~-- 290 (517)
+|...+..++|||||++||. |+.+..|++||+.++.... ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-----~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~ 192 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-----VDVIEGGKYATPKWTPDSKGFYYEWLPTDPS 192 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-----SCCBSCCTTCCCEECTTSSEEEEEECCCCTT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-----CcccCcccccceEEecCCCEEEEEEecCCCC
Confidence 46668999999999999994 4445789999998764320 1111222 67899999999999988776
Q ss_pred -----------EEEEECCCCc----EEEEeCCCCCceEEEEEeCCCCeEEEeeCCC--ceeEEEEeCCCCeeEeeeCcCC
Q 042434 291 -----------LKLWDVETGI----CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT--EKGIFMCDCDGNEIKAWRGTRI 353 (517)
Q Consensus 291 -----------i~iwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~~~~~~ 353 (517)
|++|++.++. .+.....+...+.++.|+|||++|+.++.++ ...+|+++..+.....+.....
T Consensus 193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~ 272 (695)
T 2bkl_A 193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVG 272 (695)
T ss_dssp SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSS
T ss_pred CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCC
Confidence 9999998876 3333334556789999999999998877665 4558888876555555554443
Q ss_pred CceEEEEEccCCCEEEEEeC----CCcEEEEECCCce----EEeecc--CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 042434 354 PKVLDLAVTPDGENLISVLS----DKDIRILNLGTYA----ERVISE--EHPITSLSVSVDCKNFIVNLNSQEIHMWDVA 423 (517)
Q Consensus 354 ~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~~~~~--~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~ 423 (517)
.+....+ ++|. ++..+. ++.|.+||+.++. .....+ ...+..++++ ++..+++...++..++|.+.
T Consensus 273 -~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 273 -AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp -CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred -ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 3444555 5666 554443 5789999997754 333333 3457778888 66777788888887777654
Q ss_pred CCCccceEEeCcccCceEEEeecCCCCCcEEE----EecCCCcEEEEecCCCce
Q 042434 424 GKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA----SGSENSQIYIWNRRNSKP 473 (517)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~----~~~~dg~i~iwd~~~~~~ 473 (517)
........+..+. ...+..+.++|++..++ +....++|++||+.+++.
T Consensus 349 ~~g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 349 LKGKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TTCCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCCCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 2112233333221 22345566688887776 333457899999988763
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.71 E-value=1.7e-14 Score=130.97 Aligned_cols=247 Identities=9% Similarity=0.062 Sum_probs=179.3
Q ss_pred CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCC-CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCC-CC
Q 042434 233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ-NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDH-GF 310 (517)
Q Consensus 233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~ 310 (517)
.+++|++++.|+.|.+||..++ +.+..+..+. ..+.++.++|+|++++ +.++.|..||. +|+.+..+..+ ..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK---EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT---EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCcEEEeeCCCCEEEEEECCCC---eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 4578999999999999998766 4446666555 4789999999999888 45778999999 89999988765 35
Q ss_pred ceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcC-----CCceEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 042434 311 IVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTR-----IPKVLDLAVTPDGENLISVLSDKDIRILNLGT 384 (517)
Q Consensus 311 ~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 384 (517)
.+.++.+.++|+.+++.+. ++. ++.++..++.+..+.... ......+.+.++|+++++...++.|..||...
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~--v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G 155 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPST--ILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNG 155 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEE--EEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTS
T ss_pred cccccEECCCCCEEEEecCCCCE--EEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCC
Confidence 7889999999999999877 555 888898887776654211 12345567899999999999999999999983
Q ss_pred ceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc---CceEEEeecCCCCCcEEEEecCC-
Q 042434 385 YAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ---NKYVIRSCFGGLDGTFIASGSEN- 460 (517)
Q Consensus 385 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d- 460 (517)
...........+.++...++++.++++..++.|..+|..++ +.+..+..... ....+......++|+++++....
T Consensus 156 ~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~ 234 (276)
T 3no2_A 156 QLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN-RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGH 234 (276)
T ss_dssp CEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTC-CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTT
T ss_pred CEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC-cEEEEecCCCCCCccccccccceEcCCCCEEEEeccCc
Confidence 33444544556777888999999999998889999998866 56666653321 11223444446788888776311
Q ss_pred -------CcEEEEec-CCCceeEEecCCC--CCeeEEE
Q 042434 461 -------SQIYIWNR-RNSKPIEILSGHS--MTVNCVS 488 (517)
Q Consensus 461 -------g~i~iwd~-~~~~~~~~~~~h~--~~v~~v~ 488 (517)
+..+++.+ .+|+.+.++..+. +.+.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 235 DREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 12345554 4677777776442 4455443
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=2.5e-15 Score=142.13 Aligned_cols=222 Identities=11% Similarity=0.060 Sum_probs=157.5
Q ss_pred CCEEEEEECCCCCeEEEEe---------CCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCC---CceeE
Q 042434 268 NPVSFVAWSPDDTKLLTCG---------NAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD---TEKGI 335 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d---~~v~i 335 (517)
..+...++ ||+.++... .++.|.+||+.+++... + ..+..++|+|||+.|+.++.+ +...+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 44667777 888887642 25689999999887543 3 567889999999999987764 45669
Q ss_pred EEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC---------------------------CcEEEEECCCceE-
Q 042434 336 FMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD---------------------------KDIRILNLGTYAE- 387 (517)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------------g~i~i~d~~~~~~- 387 (517)
|.++..+........... +..+.|+|||+.|+.++.+ ..|++||+.++..
T Consensus 88 ~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 88 WVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 999998776655554442 8899999999988887642 5799999988764
Q ss_pred EeeccCCCeeEEEEcCCCCEEEEEeCCC-------eEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC
Q 042434 388 RVISEEHPITSLSVSVDCKNFIVNLNSQ-------EIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN 460 (517)
Q Consensus 388 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~-------~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 460 (517)
...... .+..+.|+|+| .++++..++ ...+|.+.++ ....+..+ .. +... +|||++|+.++.+
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~l~~~-~~---~~~~--spdg~~l~~~~~~ 235 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG--KEEKMFEK-VS---FYAV--DSDGERILLYGKP 235 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT--EEEEEEEE-ES---EEEE--EECSSCEEEEECC
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC--ceEEeccC-cc---eeeE--CCCCCEEEEEEcc
Confidence 333323 78899999999 776665442 3344444332 22333333 22 2222 7999988877644
Q ss_pred --------CcEEEEecCCCceeEEecCCCCCeeE-EEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 461 --------SQIYIWNRRNSKPIEILSGHSMTVNC-VSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 461 --------g~i~iwd~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
..|++|| +++......+|...+.. +.|+ ++ ++++++.++.+++| +.++
T Consensus 236 ~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 236 EKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp SSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EESS
T ss_pred ccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcCC
Confidence 4688888 66665555667788886 9999 76 88899999999999 8643
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=3.8e-14 Score=133.14 Aligned_cols=245 Identities=7% Similarity=-0.002 Sum_probs=169.3
Q ss_pred CcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC--
Q 042434 211 PTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-- 288 (517)
Q Consensus 211 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-- 288 (517)
.......+.++...+.+++|+|+|++++++..++.|.+||..++.. ......+...+.+++|+|+|++++++..+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~ 109 (333)
T 2dg1_A 33 TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI---KRPFVSHKANPAAIKIHKDGRLFVCYLGDFK 109 (333)
T ss_dssp ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---EEEEECSSSSEEEEEECTTSCEEEEECTTSS
T ss_pred ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE---EEEeeCCCCCcceEEECCCCcEEEEeCCCCC
Confidence 4566677777888889999999999888888899999999865532 22222466789999999999888877666
Q ss_pred --CeEEEEECCCCcEEEEeC--CCCCceEEEEEeCCCCeEEEeeCC----CceeEEEEeCCCCeeEeeeCcCCCceEEEE
Q 042434 289 --EVLKLWDVETGICKHTFG--DHGFIVSSCAWFPDSKRLVCGSSD----TEKGIFMCDCDGNEIKAWRGTRIPKVLDLA 360 (517)
Q Consensus 289 --g~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~ 360 (517)
+.|.+||..++.....+. .+...+.+++++|+|+.+++...+ +...++.++..+.....+... ...+..++
T Consensus 110 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~i~ 188 (333)
T 2dg1_A 110 STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-ISVANGIA 188 (333)
T ss_dssp SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-ESSEEEEE
T ss_pred CCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-CCcccceE
Confidence 689999998887654433 345678999999999877766531 234489998876554443322 23578899
Q ss_pred EccCCCEEEEE-eCCCcEEEEECCC-ce-EE------ee--ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc
Q 042434 361 VTPDGENLISV-LSDKDIRILNLGT-YA-ER------VI--SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP 429 (517)
Q Consensus 361 ~~~~~~~l~~~-~~dg~i~i~d~~~-~~-~~------~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~ 429 (517)
|+|+++.++++ +.++.|.+||..+ +. .. .. .....+..++++++|+.+++...++.|.+||..+ ...
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g--~~~ 266 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG--YPI 266 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS--CEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC--CEE
Confidence 99999866544 5678999999853 21 11 11 1113678899999999888877889999999853 333
Q ss_pred eEEeCccc---CceEEEeecCCCCCcEEEEecCCC
Q 042434 430 FKYTGHSQ---NKYVIRSCFGGLDGTFIASGSENS 461 (517)
Q Consensus 430 ~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg 461 (517)
..+..... ....+..+.+++|++.|+.++.++
T Consensus 267 ~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 267 GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 34432221 000123344478887776665553
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.70 E-value=3.2e-13 Score=124.58 Aligned_cols=279 Identities=9% Similarity=-0.021 Sum_probs=192.1
Q ss_pred ccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC
Q 042434 219 TEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET 298 (517)
Q Consensus 219 ~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 298 (517)
......+.+++++++|++.++...++.|.+|+.. + .... ..+..+...+.++++.++++..++...++.|..||..
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~-~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G-RIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-CEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C-ceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence 3456788999999999988877778999999976 3 2222 2233344679999999999888877778899999987
Q ss_pred CcEEE-EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcE
Q 042434 299 GICKH-TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDI 377 (517)
Q Consensus 299 ~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 377 (517)
++... ........+.++++.++++.+++...++. ++.++..+.............+..+++.++++..++...++.|
T Consensus 92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~--i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 169 (300)
T 2qc5_A 92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDR--IGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI 169 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE--EEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred CCeEEecCCCCCCCCccceECCCCCEEEEccCCCe--EEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence 65432 22234567899999999988777766666 8888888443322222233468899999999976666667899
Q ss_pred EEEECCCce-EEee--ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE
Q 042434 378 RILNLGTYA-ERVI--SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI 454 (517)
Q Consensus 378 ~i~d~~~~~-~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 454 (517)
..+|. ++. .... .....+..+++++++..+++....+.|..||.... .......... ..+..+.++++|++.
T Consensus 170 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~---~~~~~i~~d~~g~l~ 244 (300)
T 2qc5_A 170 GRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGE-ISEYDIPTPN---ARPHAITAGKNSEIW 244 (300)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-EEEEECSSTT---CCEEEEEECSTTCEE
T ss_pred EEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCc-EEEEECCCCC---CCceEEEECCCCCEE
Confidence 99998 444 2221 23346889999999987777667788999998332 2211111111 223445558889877
Q ss_pred EEecCCCcEEEEecCCCceeE-EecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 455 ASGSENSQIYIWNRRNSKPIE-ILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 455 ~~~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
++...++.|..||. +++... .+......+.++++.++| .++++.. . .|..+++.
T Consensus 245 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 245 FTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDG-SVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTS-CEEEECS-S-EEEEEEEC
T ss_pred EeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCC-CEEEEcc-C-ceEEeCCC
Confidence 77767789999998 454332 233345678999999998 5655554 4 66666653
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=1.6e-14 Score=133.31 Aligned_cols=246 Identities=11% Similarity=0.014 Sum_probs=173.4
Q ss_pred cccEEEeccccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCe
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEV 290 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 290 (517)
...+..+..+.....+++|+|+|+ +++++..++.|..|+..++ ...+..+...+.+++++|+|+++++...++.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-----LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR 91 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-----EEEEESSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-----eEEEECCCCCcceeeECCCCcEEEEecCCCe
Confidence 344566667778889999999998 7788888999999998644 2345567788999999999998888777789
Q ss_pred EEEEECCCCcEEEEeCCC----CCceEEEEEeCCCCeEEE----eeC-----------CCceeEEEEeCCCCeeEeeeCc
Q 042434 291 LKLWDVETGICKHTFGDH----GFIVSSCAWFPDSKRLVC----GSS-----------DTEKGIFMCDCDGNEIKAWRGT 351 (517)
Q Consensus 291 i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~----~~~-----------d~~v~i~~~~~~~~~~~~~~~~ 351 (517)
|.+||..+++........ ...+..++++|+|+++++ |+. .+...|+.++..+. .......
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~~ 170 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-LSAPIRD 170 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC-EEEEECC
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC-EEEeecC
Confidence 999999888765443221 234667999999998887 331 01224898988743 3333322
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEECC-CceE-----EeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 352 RIPKVLDLAVTPDGENLISVLSDKDIRILNLG-TYAE-----RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 352 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
......++|+|+++.+++.+.++.|.+||+. ++.. ........+..++++++|+.+++. ++.|.+||..+
T Consensus 171 -~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g- 246 (296)
T 3e5z_A 171 -RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG- 246 (296)
T ss_dssp -CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-
T ss_pred -CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC-
Confidence 2367899999999988777778999999986 2222 111233456789999999866655 88999999864
Q ss_pred CccceEEeCcccCceEEEeecC-CCCCcEEEEecCCCcEEEEecCCCce
Q 042434 426 WEKPFKYTGHSQNKYVIRSCFG-GLDGTFIASGSENSQIYIWNRRNSKP 473 (517)
Q Consensus 426 ~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~ 473 (517)
.....+..+.. +..+.+ +++++.|++++.++ +.-++..+.++
T Consensus 247 -~~~~~~~~~~~----~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 247 -DELGRVLTPQT----TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp -CEEEEEECSSC----CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred -CEEEEEECCCC----ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 34444444333 223333 68999888888764 55666666554
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.70 E-value=9.6e-15 Score=136.67 Aligned_cols=259 Identities=10% Similarity=-0.000 Sum_probs=176.8
Q ss_pred CCCcEEEEEecCCCeeeEEEEec------cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEE
Q 042434 242 SDCSAIIWKVLEDSKLTLKHTLR------SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSC 315 (517)
Q Consensus 242 ~dg~i~iw~~~~~~~~~~~~~~~------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 315 (517)
.+++|.+||..++. ....+. ........+.+. +++..++...++.|.+||..+++.+.++. .......+
T Consensus 15 ~~~~l~~~d~~t~~---~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATCE---VENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTTE---EECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEE
T ss_pred CCceEEEEECCCCE---EhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEE
Confidence 47899999997652 222221 122446778774 44555666668999999999999988884 45678899
Q ss_pred EEeCCCCeEEEeeCCCceeEEEEeCCCCeeE-eeeCcC----CCceEEEEEccCCCEEEEEe--CCCcEEEEECCCce-E
Q 042434 316 AWFPDSKRLVCGSSDTEKGIFMCDCDGNEIK-AWRGTR----IPKVLDLAVTPDGENLISVL--SDKDIRILNLGTYA-E 387 (517)
Q Consensus 316 ~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~-~~~~~~----~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~-~ 387 (517)
+++++++.+++...++. |..+|..+..+. .+.... ......+++ ++..++++. .++.|.++|+.+.+ .
T Consensus 90 ~~~~~g~lyv~~~~~~~--v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~ 165 (328)
T 3dsm_A 90 HFLSDEKAYVTQIWDYR--IFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVV 165 (328)
T ss_dssp EEEETTEEEEEEBSCSE--EEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred EEeCCCeEEEEECCCCe--EEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence 99999854444437777 889999876654 333222 013456666 344555554 48899999999877 3
Q ss_pred EeeccCCCeeEEEEcCCCCEEEEEeCC----------CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEe
Q 042434 388 RVISEEHPITSLSVSVDCKNFIVNLNS----------QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASG 457 (517)
Q Consensus 388 ~~~~~~~~i~~~~~s~~~~~l~~~~~d----------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 457 (517)
...........+.++|+|+.++++..+ +.|.++|..+. .....+...... ....++++|++++++++
T Consensus 166 ~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~~g~--~p~~la~~~d~~~lyv~ 242 (328)
T 3dsm_A 166 DELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFKLGD--WPSEVQLNGTRDTLYWI 242 (328)
T ss_dssp EEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECCTTC--CCEEEEECTTSCEEEEE
T ss_pred EEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecCCCC--CceeEEEecCCCEEEEE
Confidence 344445567789999999977777655 78999998776 333333321110 13345558999988887
Q ss_pred cCCCcEEEEecCCCceeEE--ecCCCCCeeEEEecCCCCcEEEEe----eCCCcEEEeCCCCCC
Q 042434 458 SENSQIYIWNRRNSKPIEI--LSGHSMTVNCVSWNPKRPKMLASA----SDDHTIRIWGPCQSS 515 (517)
Q Consensus 458 ~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~v~~~~~~~~~l~s~----~~dg~v~iw~~~~~~ 515 (517)
.. .|++||..+++.... +..+.....+++++|++..++++. ..++.|.+|+.. ++
T Consensus 243 ~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 243 NN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp SS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred cc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 65 899999998876421 222246789999999554777777 678999999997 54
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.70 E-value=2e-14 Score=130.50 Aligned_cols=212 Identities=9% Similarity=0.018 Sum_probs=163.0
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEeCCCC-CceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCce
Q 042434 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHG-FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKV 356 (517)
Q Consensus 278 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i 356 (517)
.++.|++++.++.|.+||.++|+.+.++..+. ..+.++.++|+|+.+++ .++. ++.+|..++.+..+.......+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~--V~~~d~~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKG--AKMITRDGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSE--EEEECTTSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCC--EEEECCCCCEEEEEcCCCCccc
Confidence 45789999999999999999999999997765 57889999999998883 3455 8999998887777776543478
Q ss_pred EEEEEccCCCEEEEEeC-CCcEEEEECCCceEEeec-------cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 042434 357 LDLAVTPDGENLISVLS-DKDIRILNLGTYAERVIS-------EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK 428 (517)
Q Consensus 357 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~ 428 (517)
.++.+.++|+.+++.+. ++.+..+|.......... +......+++.++|+++++...++.|..||.. + +.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G-~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G-QL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-CE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-CE
Confidence 89999999999999887 788888887443322221 11234566789999999999999999999987 4 56
Q ss_pred ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC------CCeeEEEecCCCCcEEEEe
Q 042434 429 PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS------MTVNCVSWNPKRPKMLASA 500 (517)
Q Consensus 429 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~v~~~~~~~~~l~s~ 500 (517)
...+...... .. ....++|+++++++.++.|..+|..+|+.+.++..+. ..+.+++..++| .++++.
T Consensus 158 ~w~~~~~~~~-~~---~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G-~i~v~~ 230 (276)
T 3no2_A 158 LNSVKLSGTP-FS---SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNG-GLYICN 230 (276)
T ss_dssp EEEEECSSCC-CE---EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTS-CEEEEE
T ss_pred EEEEECCCCc-cc---eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCC-CEEEEe
Confidence 6666543222 11 2225789999999988999999999999998886432 237888899998 566665
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.68 E-value=1.2e-14 Score=132.02 Aligned_cols=239 Identities=8% Similarity=-0.044 Sum_probs=165.5
Q ss_pred cEEEEEECCCCCEEE-EeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE
Q 042434 224 EVWFVQFSNNGEYLA-SSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK 302 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 302 (517)
...+++++++|++++ +.+.++.|.+|+..+.. .......+...+.+++++++++++++.. ++.|.+||..++...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc---cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 778999999999777 54678899999864332 1111123335688999999998666655 889999998765543
Q ss_pred EEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEE
Q 042434 303 HTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILN 381 (517)
Q Consensus 303 ~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 381 (517)
.+. .....+.++++.++|+.+++...++. |+.++..+.............+.+++++++|+.+++...++.|.+||
T Consensus 101 -~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~--i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 101 -VLPFDGLNYPEGLAVDTQGAVYVADRGNNR--VVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp -ECCCCSCSSEEEEEECTTCCEEEEEGGGTE--EEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred -eeecCCcCCCcceEECCCCCEEEEECCCCE--EEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 332 23367899999999987777666777 77777654433322222223578899999999777777788999999
Q ss_pred CCCceEEee--ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC
Q 042434 382 LGTYAERVI--SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE 459 (517)
Q Consensus 382 ~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 459 (517)
..+...... .....+..++++++|..+++...++.|..||..+.... .... . .......+.++++|+++++...
T Consensus 178 ~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~--~~~~-~-~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 178 AESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST--VLPF-T-GLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp TTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE--ECCC-C-SCSCEEEEEECTTCCEEEEEGG
T ss_pred cCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce--eecc-C-CCCCceeEEECCCCCEEEEECC
Confidence 887663222 22356889999999977777777889999998664221 1111 1 1112445556899998888889
Q ss_pred CCcEEEEecCCCce
Q 042434 460 NSQIYIWNRRNSKP 473 (517)
Q Consensus 460 dg~i~iwd~~~~~~ 473 (517)
++.|++++....+.
T Consensus 254 ~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 254 NDRVVKLTSLEHHH 267 (270)
T ss_dssp GTEEEEECCCGGGS
T ss_pred CCEEEEEcCCCccc
Confidence 99999999875543
No 195
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.68 E-value=1.1e-13 Score=137.90 Aligned_cols=273 Identities=11% Similarity=0.044 Sum_probs=189.0
Q ss_pred CCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC--CCcEEEEeCCCC
Q 042434 232 NNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE--TGICKHTFGDHG 309 (517)
Q Consensus 232 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~ 309 (517)
|.+.++++...++.|.++|..++. .+.++.. ...+..+.|+|||+++++++.|+.|.+||+. +++.+..+.. .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~---v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYE---IKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-G 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCC---EEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-C
T ss_pred CCceEEEEeCCCCeEEEEECCCCe---EEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-C
Confidence 445567777889999999997663 3344432 3467799999999999999999999999996 8888887754 3
Q ss_pred CceEEEEEe----CCCCeEEEeeCC-CceeEEEEeCCCCee-EeeeCc----------CCCceEEEEEccCCCEE-EEEe
Q 042434 310 FIVSSCAWF----PDSKRLVCGSSD-TEKGIFMCDCDGNEI-KAWRGT----------RIPKVLDLAVTPDGENL-ISVL 372 (517)
Q Consensus 310 ~~v~~i~~~----~~~~~l~~~~~d-~~v~i~~~~~~~~~~-~~~~~~----------~~~~i~~~~~~~~~~~l-~~~~ 372 (517)
.....++|+ |||++++++... +. +.++|..+... ..+... ....+..+..++++..+ +...
T Consensus 240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~--v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~ 317 (567)
T 1qks_A 240 SEARSIETSKMEGWEDKYAIAGAYWPPQ--YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 317 (567)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEETTE--EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCCceeEEccccCCCCCEEEEEEccCCe--EEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence 446899999 699988887664 66 67778765433 333211 12357788889887654 4455
Q ss_pred CCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceEEeC--c-ccCceEEEee
Q 042434 373 SDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPFKYTG--H-SQNKYVIRSC 445 (517)
Q Consensus 373 ~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~--~-~~~~~~i~~~ 445 (517)
.+|.|.++|..... ...+........+.|+|++++++++. .++.|.++|+.++ ........ . ........
T Consensus 318 ~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg~g~~-- 394 (567)
T 1qks_A 318 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPGRGAN-- 394 (567)
T ss_dssp TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCTTCEE--
T ss_pred CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCCcccee--
Confidence 67999999987653 33334455677899999999987766 5789999999876 44333332 1 11111122
Q ss_pred cCCCCCc-EEEEec-CCCcEEEEecCC-------CceeEEecCCCCCeeEEEecCCCCcEEEEeeC------CCcEEEeC
Q 042434 446 FGGLDGT-FIASGS-ENSQIYIWNRRN-------SKPIEILSGHSMTVNCVSWNPKRPKMLASASD------DHTIRIWG 510 (517)
Q Consensus 446 ~~s~~~~-~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~------dg~v~iw~ 510 (517)
+++|++. ..+++. .++.|.++|..+ .+.+.++......-..+..+|+++++.++... .++|.++|
T Consensus 395 ~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 395 FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 2367744 444443 468999999987 67788887654444568899999544443321 35899999
Q ss_pred CCCC
Q 042434 511 PCQS 514 (517)
Q Consensus 511 ~~~~ 514 (517)
+.+.
T Consensus 475 ~~~~ 478 (567)
T 1qks_A 475 IKAM 478 (567)
T ss_dssp GGGC
T ss_pred CCcc
Confidence 8765
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.67 E-value=4.5e-13 Score=127.00 Aligned_cols=273 Identities=8% Similarity=-0.023 Sum_probs=179.1
Q ss_pred ECCCCCEEEEeeC--CC---cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe----------CCCeEEEE
Q 042434 230 FSNNGEYLASSSS--DC---SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG----------NAEVLKLW 294 (517)
Q Consensus 230 ~s~~~~~l~t~~~--dg---~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iw 294 (517)
..|+++++++... .. .|.+||..++ +...++.....+ .++++|||++++++. .++.|.+|
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~---~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSG---SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCC---eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 3467776666543 22 7899998765 344555544444 999999999999875 36789999
Q ss_pred ECCCCcEEEEeCCC-------CCceEEEEEeCCCCeEEEeeC--CCceeEEEEeCCCCeeEee-eCcCCCceEEEEEccC
Q 042434 295 DVETGICKHTFGDH-------GFIVSSCAWFPDSKRLVCGSS--DTEKGIFMCDCDGNEIKAW-RGTRIPKVLDLAVTPD 364 (517)
Q Consensus 295 d~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~ 364 (517)
|..+.+.+..+... ......++|+|||++++++.. ++. |.++| .+..+... .... .++.+.|+
T Consensus 103 D~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~--v~viD-~t~~~~~~~i~~~----~~~~~~~~ 175 (373)
T 2mad_H 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA--VGLVV-QGGSSDDQLLSSP----TCYHIHPG 175 (373)
T ss_pred ECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe--EEEEE-CCCCEEeEEcCCC----ceEEEEeC
Confidence 99998887766432 133568999999999999875 355 77778 76544322 2211 12444555
Q ss_pred C-CEEEEEeCCCcEEEEECCCceEE-ee------ccCCC-eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc-eEEeC
Q 042434 365 G-ENLISVLSDKDIRILNLGTYAER-VI------SEEHP-ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP-FKYTG 434 (517)
Q Consensus 365 ~-~~l~~~~~dg~i~i~d~~~~~~~-~~------~~~~~-i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~ 434 (517)
+ +.+++.+.||.+.++|. +++.. .. ....+ .....+.+++..++..+..+.+.+.|+.+..... ..+..
T Consensus 176 ~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~ 254 (373)
T 2mad_H 176 APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA 254 (373)
T ss_pred CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeee
Confidence 5 45667778999999999 66522 11 11111 1234566666665555678899999986542111 11110
Q ss_pred ccc-------CceEEEeecCCCCCcEEEEecC----------CCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEE
Q 042434 435 HSQ-------NKYVIRSCFGGLDGTFIASGSE----------NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKML 497 (517)
Q Consensus 435 ~~~-------~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l 497 (517)
... .......+.++++++.++++.. ++.|.++|..+++.+.++.. .....+++|+|||..++
T Consensus 255 ~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l 333 (373)
T 2mad_H 255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDL 333 (373)
T ss_pred cCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEE
Confidence 000 0001222345889888877643 35799999999999998863 34689999999994367
Q ss_pred EEee-CCCcEEEeCCCCCCC
Q 042434 498 ASAS-DDHTIRIWGPCQSSE 516 (517)
Q Consensus 498 ~s~~-~dg~v~iw~~~~~~~ 516 (517)
+++. .++.|.+||+.+++.
T Consensus 334 ~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 334 YALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred EEEcCCCCeEEEEECCCCCE
Confidence 7766 589999999998774
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.66 E-value=1.4e-14 Score=151.16 Aligned_cols=278 Identities=13% Similarity=0.067 Sum_probs=176.6
Q ss_pred CCCCEEEEeeCCCc---EEEEEecC----CCeeeEEEE----eccCCCCEEEEEECCCCCeEEEEeCC-----CeEEEEE
Q 042434 232 NNGEYLASSSSDCS---AIIWKVLE----DSKLTLKHT----LRSHQNPVSFVAWSPDDTKLLTCGNA-----EVLKLWD 295 (517)
Q Consensus 232 ~~~~~l~t~~~dg~---i~iw~~~~----~~~~~~~~~----~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd 295 (517)
|+|++++....++. -.+|.... +.....+.. -.+|...+..++|||||++|+.++.+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 77887776654433 56666542 222222111 12233468899999999999877553 3699999
Q ss_pred CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc------------eeEEEEeCCCCe---eEeeeCcC-CCceEEE
Q 042434 296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE------------KGIFMCDCDGNE---IKAWRGTR-IPKVLDL 359 (517)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~------------v~i~~~~~~~~~---~~~~~~~~-~~~i~~~ 359 (517)
+.+|+.+... .+...+..++|+|| +.|+.++.++. ..|+.|+..+.. ...+.... ...+..+
T Consensus 196 l~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 196 VADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp TTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 9999876532 12222357899999 99988887653 248899986543 22222221 1247899
Q ss_pred EEccCCCEEEEEeCCC-----cEEEEECCCc--e--EEeeccCCCeeEEEEcCCCCEEEEEeCC----CeEEEEEcCCCC
Q 042434 360 AVTPDGENLISVLSDK-----DIRILNLGTY--A--ERVISEEHPITSLSVSVDCKNFIVNLNS----QEIHMWDVAGKW 426 (517)
Q Consensus 360 ~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d----~~i~~~d~~~~~ 426 (517)
.|+|||++++..+.++ .|++||+.++ . ............. ++|+|+.++..+.+ +.|.+||+.+..
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 352 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST 352 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence 9999999988877544 8999999765 2 2333333334444 45899998888763 459999987631
Q ss_pred ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC-CCceeEEecC-CCCCeeEEEecCCCCcEEEEee---
Q 042434 427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR-NSKPIEILSG-HSMTVNCVSWNPKRPKMLASAS--- 501 (517)
Q Consensus 427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~--- 501 (517)
.....+..+... .+..+.++ ++.++++...|+..++|.+. ++.....+.. +.+.+..+.++|++..++++.+
T Consensus 353 ~~~~~l~~~~~~--~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~ 429 (741)
T 1yr2_A 353 PRFDTVVPESKD--NLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFT 429 (741)
T ss_dssp CEEEEEECCCSS--EEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETT
T ss_pred cccEEEecCCCC--eEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence 111222222222 23333333 56788888889877777544 4666666664 3677899999999854555444
Q ss_pred CCCcEEEeCCCCCC
Q 042434 502 DDHTIRIWGPCQSS 515 (517)
Q Consensus 502 ~dg~v~iw~~~~~~ 515 (517)
..++|++||+.+++
T Consensus 430 ~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 430 QPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEEEETTTTE
T ss_pred CCCEEEEEECCCCc
Confidence 35789999988754
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.65 E-value=1.3e-13 Score=128.33 Aligned_cols=244 Identities=11% Similarity=0.075 Sum_probs=168.4
Q ss_pred CCCCEEEEEECCCCCeEEE-------EeCCCeEEEEECCCCcEEEEeC----CCCCceEEEEEeCC-CCeEEEeeCCCce
Q 042434 266 HQNPVSFVAWSPDDTKLLT-------CGNAEVLKLWDVETGICKHTFG----DHGFIVSSCAWFPD-SKRLVCGSSDTEK 333 (517)
Q Consensus 266 h~~~v~~l~~s~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~i~~~~~-~~~l~~~~~d~~v 333 (517)
.-....+++|++++..+++ +..++.|.+||..+++...... ++...+.+++++++ ++++++...+ .
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~-~- 93 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL-G- 93 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT-E-
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC-C-
Confidence 3456789999999988877 5778899999988887653322 14467899999999 6655544433 3
Q ss_pred eEEEEeCCCCeeEee-eC----cCCCceEEEEEccCCCEEEEEeCC---------------CcEEEEECCCce-EEeecc
Q 042434 334 GIFMCDCDGNEIKAW-RG----TRIPKVLDLAVTPDGENLISVLSD---------------KDIRILNLGTYA-ERVISE 392 (517)
Q Consensus 334 ~i~~~~~~~~~~~~~-~~----~~~~~i~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~-~~~~~~ 392 (517)
++.|+.. .....+ .. .....+.+++++++|+.+++...+ +.|..||.. +. ......
T Consensus 94 -l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~ 170 (314)
T 1pjx_A 94 -LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA 170 (314)
T ss_dssp -EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE
T ss_pred -EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC
Confidence 8889988 444433 21 112357899999999887776655 578888876 33 333333
Q ss_pred CCCeeEEEEc----CCCCEEEEE-eCCCeEEEEEcC-CCCc-cceEEeCcccCc-eEEEeecCCCCCcEEEEecCCCcEE
Q 042434 393 EHPITSLSVS----VDCKNFIVN-LNSQEIHMWDVA-GKWE-KPFKYTGHSQNK-YVIRSCFGGLDGTFIASGSENSQIY 464 (517)
Q Consensus 393 ~~~i~~~~~s----~~~~~l~~~-~~d~~i~~~d~~-~~~~-~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~i~ 464 (517)
......++++ |+++.++++ ..++.|.+||.. .+.. ....+....... .....+.++++|++.++...++.|.
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence 4456889999 999766555 567899999975 2211 111111111111 2234455688999888877888999
Q ss_pred EEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 465 IWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 465 iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
+||..+++.+..+..+...+.+++|+|++..++++...++.|..|++...
T Consensus 251 ~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 99998888877777777889999999999336666667789999998753
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.62 E-value=2.7e-12 Score=118.25 Aligned_cols=237 Identities=9% Similarity=0.012 Sum_probs=169.8
Q ss_pred ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEE-eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC
Q 042434 264 RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT-FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG 342 (517)
Q Consensus 264 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~ 342 (517)
..+...+.+++++++|+..++...++.|.+||.. ++.... .......+.++++.+++..+++...++. ++.|+..+
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~--i~~~~~~g 87 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANK--IGRITKKG 87 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE--EEEECTTS
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCe--EEEECCCC
Confidence 3455789999999999988777668899999988 654432 2234577899999999988877766776 88888875
Q ss_pred CeeEeeeC-cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEee--ccCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 042434 343 NEIKAWRG-TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVI--SEEHPITSLSVSVDCKNFIVNLNSQEIH 418 (517)
Q Consensus 343 ~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~i~ 418 (517)
. ...+.. .....+..+++.+++..+++...++.|.+||. ++. .... .....+..++++++++.+++...++.|.
T Consensus 88 ~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 I-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp C-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred c-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 4 333332 23346889999999988887777889999998 444 2221 2345688999999998877777788999
Q ss_pred EEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEE-ecCCCCCeeEEEecCCCCcEE
Q 042434 419 MWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEI-LSGHSMTVNCVSWNPKRPKML 497 (517)
Q Consensus 419 ~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~l 497 (517)
.||. ++........... ..+..+.++++|++.++...++.|.+||. +++.... +..+...+.+++++++| .++
T Consensus 166 ~~~~-~g~~~~~~~~~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~ 239 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPA---SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGI-DLW 239 (299)
T ss_dssp EECT-TCCEEEEECSSTT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTT-CEE
T ss_pred EEcC-CCcEEEeeCCCCC---CcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCC-CEE
Confidence 9998 4312111111111 12344555888988777777889999998 6664332 33455778999999998 677
Q ss_pred EEeeCCCcEEEeCC
Q 042434 498 ASASDDHTIRIWGP 511 (517)
Q Consensus 498 ~s~~~dg~v~iw~~ 511 (517)
++...++.|..|+.
T Consensus 240 v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 240 FTEWGANKIGRLTS 253 (299)
T ss_dssp EEETTTTEEEEEET
T ss_pred EeccCCceEEEECC
Confidence 66667788999987
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.60 E-value=2.7e-13 Score=126.62 Aligned_cols=272 Identities=10% Similarity=0.049 Sum_probs=178.6
Q ss_pred ECCCCCEEEEeeC-----CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe----------CCCeEEEE
Q 042434 230 FSNNGEYLASSSS-----DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG----------NAEVLKLW 294 (517)
Q Consensus 230 ~s~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iw 294 (517)
..|+++.++.... ++.|.+.|..+. +.+.++.....+ . ++++|||+++++++ .++.|.+|
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~---~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAG---RVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTT---EEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCC---eEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 4578887777654 678999998765 444555544455 4 99999999988775 36789999
Q ss_pred ECCCCcEEEEeCCC-------CCceEEEEEeCCCCeEEEeeC--CCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccC
Q 042434 295 DVETGICKHTFGDH-------GFIVSSCAWFPDSKRLVCGSS--DTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPD 364 (517)
Q Consensus 295 d~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~ 364 (517)
|..+++.+..+.-. ......++++|||++++++.. ++. |.++|..+..+. .+.... . ...+...
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~--VsVID~~t~~vv~tI~v~g---~-~~~~P~g 188 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA--VGVVDLEGKAFKRMLDVPD---C-YHIFPTA 188 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE--EEEEETTTTEEEEEEECCS---E-EEEEEEE
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe--EEEEECCCCcEEEEEECCC---c-ceeecCC
Confidence 99999988877422 124567999999999998865 456 889999876654 332221 1 2223334
Q ss_pred CCEEEEEeCCCcEEEEECCC-ceEEe-e-cc----CCCe-eEEEEc-CCCCEEEEEeCCCeEEEEEcCCCCc-cceEEe-
Q 042434 365 GENLISVLSDKDIRILNLGT-YAERV-I-SE----EHPI-TSLSVS-VDCKNFIVNLNSQEIHMWDVAGKWE-KPFKYT- 433 (517)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~-~~~~~-~-~~----~~~i-~~~~~s-~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~- 433 (517)
.+.+++.+.||.+.+.++.+ ++... . .. ..++ ....|. ++|+.++ .+.+|.+++.|+.+... ....+.
T Consensus 189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~ 267 (386)
T 3sjl_D 189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEA 267 (386)
T ss_dssp TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEES
T ss_pred CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceec
Confidence 45677778888888888865 33211 0 01 1122 123553 5665544 55589999999976421 222221
Q ss_pred --------CcccCceEEEeecCCCCCcEEEEecC----------CCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCc
Q 042434 434 --------GHSQNKYVIRSCFGGLDGTFIASGSE----------NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPK 495 (517)
Q Consensus 434 --------~~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 495 (517)
+..... ...+.++++++.++.... .+.|.++|+.+++.+..+.. ...+.++++++++..
T Consensus 268 ~~~~~~~~g~~p~g--~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~ 344 (386)
T 3sjl_D 268 LTEAERADGWRPGG--WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKP 344 (386)
T ss_dssp SCHHHHHTTEEECS--SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSC
T ss_pred cccccccccccCCC--cceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCe
Confidence 000100 112223678887777542 24799999999999998874 347889999999943
Q ss_pred EEEE-eeCCCcEEEeCCCCCCC
Q 042434 496 MLAS-ASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 496 ~l~s-~~~dg~v~iw~~~~~~~ 516 (517)
+|++ ...++.|.++|..+++.
T Consensus 345 ~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 345 LLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp EEEEEETTTTEEEEEETTTCCE
T ss_pred EEEEEcCCCCeEEEEECCCCcE
Confidence 5544 55699999999998874
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.59 E-value=5.1e-13 Score=124.79 Aligned_cols=277 Identities=10% Similarity=0.024 Sum_probs=176.6
Q ss_pred CCcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEee----------CCCcEEEEEecCCCeeeEEEEecc----CC
Q 042434 202 DHCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSS----------SDCSAIIWKVLEDSKLTLKHTLRS----HQ 267 (517)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~----h~ 267 (517)
+....++....+.+..+.....+ . +++||||+++++++ .++.|.+||..+......+..-.+ ..
T Consensus 59 ~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g 136 (386)
T 3sjl_D 59 TQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVG 136 (386)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccC
Confidence 34455666667777777765555 4 99999999887765 367899999976643332221110 01
Q ss_pred CCEEEEEECCCCCeEEEEeC--CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-Ce
Q 042434 268 NPVSFVAWSPDDTKLLTCGN--AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NE 344 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~ 344 (517)
.....++|+|||++++++.. ++.|.++|+.+++.+.++..... ...+....+.+++.+.||. +...+... ..
T Consensus 137 ~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~--~~~v~~~~~g~ 211 (386)
T 3sjl_D 137 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGS--LAKVAFGTEGT 211 (386)
T ss_dssp CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSC--EEEEECCSSSC
T ss_pred CCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCC--EEEEECCCCCe
Confidence 24567899999999988764 68999999999999988853321 1223334456667777777 55555543 22
Q ss_pred eEeeeCcC----CCce-EEEEEc-cCCCEEEEEeCCCcEEEEECCCceEEeec--------------cCCCeeEEEEcCC
Q 042434 345 IKAWRGTR----IPKV-LDLAVT-PDGENLISVLSDKDIRILNLGTYAERVIS--------------EEHPITSLSVSVD 404 (517)
Q Consensus 345 ~~~~~~~~----~~~i-~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------~~~~i~~~~~s~~ 404 (517)
+....... ...+ ....|. ++|++++ .+.+|.+++.|..+....... .......++++++
T Consensus 212 v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~ 290 (386)
T 3sjl_D 212 PEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 290 (386)
T ss_dssp CEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred EEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC
Confidence 21111111 1112 223553 6775544 566899999999765411110 1223456788999
Q ss_pred CCEEEEEeC----------CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc-EEEEe-cCCCcEEEEecCCCc
Q 042434 405 CKNFIVNLN----------SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT-FIASG-SENSQIYIWNRRNSK 472 (517)
Q Consensus 405 ~~~l~~~~~----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~-~~dg~i~iwd~~~~~ 472 (517)
++.+++... .+.|.++|+.+. +.+..+.... ....+.+++|++ +|+++ ..++.|.++|..+++
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~-kv~~~i~vg~----~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-ERLAKFEMGH----EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTC-CEEEEEEEEE----EECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCC-eEEEEEECCC----CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 999888753 257999999887 4444443221 234555689986 66664 458999999999999
Q ss_pred eeEEecCCCCCeeEEEecCC
Q 042434 473 PIEILSGHSMTVNCVSWNPK 492 (517)
Q Consensus 473 ~~~~~~~h~~~v~~v~~~~~ 492 (517)
.+.++..- +.-+.+.+++|
T Consensus 366 ~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 366 ELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEEEECCC-CSSCCEEEECC
T ss_pred EEEEecCC-CCCceeEECCc
Confidence 99998743 44456666665
No 202
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.59 E-value=8.1e-13 Score=123.54 Aligned_cols=250 Identities=7% Similarity=-0.007 Sum_probs=167.3
Q ss_pred CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE
Q 042434 223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK 302 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 302 (517)
.....+.+. +++..++...++.|.+||..+++. +.++. .......+++++++...++...++.|.+||..+++..
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~---~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE---VGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE---EEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE---EEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 456777774 345555666679999999976643 34443 3467899999999855455448999999999999887
Q ss_pred EEeCCCC-----CceEEEEEeCCCCeEEEee--CCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEeCC
Q 042434 303 HTFGDHG-----FIVSSCAWFPDSKRLVCGS--SDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVLSD 374 (517)
Q Consensus 303 ~~~~~~~-----~~v~~i~~~~~~~~l~~~~--~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 374 (517)
..+.... .....+++ ++..++++. .++. |..+|..+..+ ..+.... ....+.++|+|+.++++..+
T Consensus 119 ~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~--v~viD~~t~~~~~~i~~g~--~p~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 119 GYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNR--ILKIDTETDKVVDELTIGI--QPTSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp EEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCE--EEEEETTTTEEEEEEECSS--CBCCCEECTTSEEEEEBCCB
T ss_pred EEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCE--EEEEECCCCeEEEEEEcCC--CccceEEcCCCCEEEEECCC
Confidence 7665332 14556777 345555554 3666 88999886554 3333322 45788999999877766554
Q ss_pred ----------CcEEEEECCCceEE-eecc--CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceE
Q 042434 375 ----------KDIRILNLGTYAER-VISE--EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYV 441 (517)
Q Consensus 375 ----------g~i~i~d~~~~~~~-~~~~--~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 441 (517)
+.|.++|..+.+.. .... ......++++|+++.++++.. .|.+||..+.......+.... ...
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~--~~~ 268 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR--DTK 268 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC--SSC
T ss_pred ccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC--CCc
Confidence 78999999887722 2222 346899999999999888765 899999976532211111110 112
Q ss_pred EEeecCCC-CCcEEEEe----cCCCcEEEEecCCCceeEEecCCCCCeeEEEe
Q 042434 442 IRSCFGGL-DGTFIASG----SENSQIYIWNRRNSKPIEILSGHSMTVNCVSW 489 (517)
Q Consensus 442 i~~~~~s~-~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 489 (517)
...+.++| ++.+.++. ..++.|.+||.. ++.+.++.. ......++|
T Consensus 269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV-GIIPGAFCW 319 (328)
T ss_dssp EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE-EESEEEEEE
T ss_pred eEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe-ccCcceEEE
Confidence 33445577 56666665 578899999998 998888763 233355555
No 203
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.59 E-value=3.2e-12 Score=117.75 Aligned_cols=232 Identities=11% Similarity=0.066 Sum_probs=155.8
Q ss_pred cCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC
Q 042434 265 SHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN 343 (517)
Q Consensus 265 ~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~ 343 (517)
.+..-.-+..|+|++ .++++...++.|..||..+++.. .+ .....+.+++++++|+++++ .. +. |+.++..+.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~~-~~--l~~~d~~~g 83 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-IG-TK--FCALNWKEQ 83 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-ET-TE--EEEEETTTT
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-EC-Ce--EEEEECCCC
Confidence 344456788999965 45566667889999999887653 33 34567899999999995554 43 33 889998876
Q ss_pred eeEeeeCc----CCCceEEEEEccCCCEEEEEeC-----------CCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEE
Q 042434 344 EIKAWRGT----RIPKVLDLAVTPDGENLISVLS-----------DKDIRILNLGTYAERVISEEHPITSLSVSVDCKNF 408 (517)
Q Consensus 344 ~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l 408 (517)
....+... ....+.+++++|+|+.+++... .+.|..+|.................++|+|+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEE
Confidence 65544322 2235788999999996665432 23455555443223333444557899999999977
Q ss_pred EE-EeCCCeEEEEEcC--CCCcc-ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCe
Q 042434 409 IV-NLNSQEIHMWDVA--GKWEK-PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTV 484 (517)
Q Consensus 409 ~~-~~~d~~i~~~d~~--~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v 484 (517)
++ .+.++.|..||+. ++... ...+............+.++++|++.++...++.|..||..+|+.+..+..+...+
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~ 243 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKT 243 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBE
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCc
Confidence 55 4557899999973 33111 11111111111123445558899888887778899999999999999998887889
Q ss_pred eEEEec-CCCCcEEEEeeC
Q 042434 485 NCVSWN-PKRPKMLASASD 502 (517)
Q Consensus 485 ~~v~~~-~~~~~~l~s~~~ 502 (517)
++++|. |++..++++...
T Consensus 244 t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 244 TSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEEEESGGGCEEEEEEBC
T ss_pred eEEEEeCCCCCEEEEEcCC
Confidence 999998 887556666554
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.58 E-value=2.1e-13 Score=142.28 Aligned_cols=243 Identities=16% Similarity=0.109 Sum_probs=156.5
Q ss_pred cccCcEEEEEECCCCCEEEEeeCC-----CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCe----
Q 042434 220 EHKNEVWFVQFSNNGEYLASSSSD-----CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEV---- 290 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~---- 290 (517)
+|...+..++|||||++||.++.+ ..|++||+.++..... .. +...+..++|+|| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~ 234 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--EL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQ 234 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--EE--EEEESCCCEESTT-SEEEEEECCCC----
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--cC--CCceeccEEEECC-CEEEEEEecCccccc
Confidence 344578899999999999987653 3599999987754321 11 1112357899999 99988877654
Q ss_pred ----------EEEEECCCCcE--EEEeC--CCCCceEEEEEeCCCCeEEEeeCCC---ceeEEEEeCCCC--e-eEeeeC
Q 042434 291 ----------LKLWDVETGIC--KHTFG--DHGFIVSSCAWFPDSKRLVCGSSDT---EKGIFMCDCDGN--E-IKAWRG 350 (517)
Q Consensus 291 ----------i~iwd~~~~~~--~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~---~v~i~~~~~~~~--~-~~~~~~ 350 (517)
|++|++.++.. ...+. .+...+..+.|+|||++|+..+.++ ...+++|+..+. . ...+..
T Consensus 235 ~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~ 314 (741)
T 1yr2_A 235 AFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP 314 (741)
T ss_dssp ----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC
T ss_pred ccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC
Confidence 89999987752 23333 3334588999999999988877653 345899988765 4 455544
Q ss_pred cCCCceEEEEEccCCCEEEEEeCC----CcEEEEECCCc--e-EEeec-cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434 351 TRIPKVLDLAVTPDGENLISVLSD----KDIRILNLGTY--A-ERVIS-EEHPITSLSVSVDCKNFIVNLNSQEIHMWDV 422 (517)
Q Consensus 351 ~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~--~-~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~ 422 (517)
... .+... ++|+|+.++..+.+ +.|.+||+.+. . ..... ....+..++++ ++..+++...++..++|.+
T Consensus 315 ~~~-~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 315 DLK-AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp SSS-SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred CCC-ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 443 33333 34899988887764 45999999874 3 23333 33345567776 5556777777887776655
Q ss_pred CCCCccceEEeCcccCceEEEeecCCCCCcEEE----EecCCCcEEEEecCCCc
Q 042434 423 AGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA----SGSENSQIYIWNRRNSK 472 (517)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~----~~~~dg~i~iwd~~~~~ 472 (517)
.........+.... ...+....++|++..++ +....++|+.||+.+++
T Consensus 392 ~~~g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 392 DLDGKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp ETTSCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eCCCCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 32112333333211 12344555688887665 23345789999998876
No 205
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.57 E-value=1.6e-12 Score=125.02 Aligned_cols=237 Identities=12% Similarity=0.011 Sum_probs=165.6
Q ss_pred CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-E
Q 042434 268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-K 346 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~ 346 (517)
.....++|+++++++++...++.|++||..++........... .. ++|+++++.++++..++...|+.++..+... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4688999999999778877789999999988876655544333 33 9999999999998887644599998875432 2
Q ss_pred ee---eCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEee------ccCCCe--eEEEEcCC-CCEEEEEeCC
Q 042434 347 AW---RGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI------SEEHPI--TSLSVSVD-CKNFIVNLNS 414 (517)
Q Consensus 347 ~~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~~~~~i--~~~~~s~~-~~~l~~~~~d 414 (517)
.. .......+.+++++|++..|+++..++.|+.||..+...... ...... ..++|+|+ +..+++...+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 22 121334678899999656666677888999999987663322 111111 39999996 5555555668
Q ss_pred CeEEEEEcCCCCccceEEeCcc------------cCceEEEeecCCCCCcEEEEec-CCCcEEEEecCCCceeEEecCC-
Q 042434 415 QEIHMWDVAGKWEKPFKYTGHS------------QNKYVIRSCFGGLDGTFIASGS-ENSQIYIWNRRNSKPIEILSGH- 480 (517)
Q Consensus 415 ~~i~~~d~~~~~~~~~~~~~~~------------~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h- 480 (517)
+.|+.|+.... ...+.++. ........++++++|+++++-+ .++.|+.|+..++.. .++.++
T Consensus 289 ~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~ 364 (409)
T 3hrp_A 289 SSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQV 364 (409)
T ss_dssp TEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECT
T ss_pred CEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCC
Confidence 89999997653 22222221 0011134455689999888877 889999999877764 344333
Q ss_pred --------------CCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 481 --------------SMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 481 --------------~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
-....++++++++ .++++-..++.|+.+++
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEESTTCEEEEEEE
T ss_pred CCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECCCCeEEEEEe
Confidence 2458899999998 78888888889988765
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.57 E-value=2e-11 Score=115.61 Aligned_cols=259 Identities=8% Similarity=-0.027 Sum_probs=166.4
Q ss_pred ccccCCCcccEEEeccccCcEEEEEECCCCCEEEEee----------CCCcEEEEEecCCCeeeEEEEe-cc---CCCCE
Q 042434 205 CGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSS----------SDCSAIIWKVLEDSKLTLKHTL-RS---HQNPV 270 (517)
Q Consensus 205 ~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~-~~---h~~~v 270 (517)
..++....+.+..+.....+ .+++||||++++.+. .++.|.+||..+......+..- .. +....
T Consensus 50 ~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p 127 (373)
T 2mad_H 50 WVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS 127 (373)
T ss_pred EEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCc
Confidence 44555556666666654444 999999999998875 3678999999655332222110 00 01234
Q ss_pred EEEEECCCCCeEEEEeC--CCeEEEEECCCCcEEEE-eCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCeeE
Q 042434 271 SFVAWSPDDTKLLTCGN--AEVLKLWDVETGICKHT-FGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNEIK 346 (517)
Q Consensus 271 ~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~~~ 346 (517)
..+.|+|||++|+++.. ++.|.++| .+++.+.. +.... ++.+.|++ +.+++.+.||. +..++..++...
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~--~~~vd~~g~~~~ 200 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGG--LAKTDHAGGAAG 200 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCC--EEEEECCCcEEE
Confidence 58999999999998874 47899999 99998877 64322 24455554 45566677887 666666333331
Q ss_pred eee-----CcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEE---eec-----------cCCCeeEEEEcCCCCE
Q 042434 347 AWR-----GTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAER---VIS-----------EEHPITSLSVSVDCKN 407 (517)
Q Consensus 347 ~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~-----------~~~~i~~~~~s~~~~~ 407 (517)
... ...........+.+++..++..+..+.+.+.|+.+.... ... .......+.++|+++.
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 211 111111233456676666555567889999998754311 110 0122344789999998
Q ss_pred EEEEeC----------CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc-EEEEec-CCCcEEEEecCCCceeE
Q 042434 408 FIVNLN----------SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT-FIASGS-ENSQIYIWNRRNSKPIE 475 (517)
Q Consensus 408 l~~~~~----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~ 475 (517)
++++.. ++.|.++|..+. +.+..+..... ...+.++|||+ .++++. .++.|.+||..+++.+.
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~-~vv~~i~~g~~----p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~ 355 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVG-QTSSQISLGHD----VDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCC-EEEEEEECCCC----cCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEe
Confidence 888653 357999999876 44445432221 33445599999 777777 58999999999999988
Q ss_pred Ee
Q 042434 476 IL 477 (517)
Q Consensus 476 ~~ 477 (517)
++
T Consensus 356 ~i 357 (373)
T 2mad_H 356 ST 357 (373)
T ss_pred ee
Confidence 84
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.55 E-value=1.7e-12 Score=123.66 Aligned_cols=271 Identities=10% Similarity=0.077 Sum_probs=177.6
Q ss_pred CCCEEEEeeC-C----CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe----------CCCeEEEEECC
Q 042434 233 NGEYLASSSS-D----CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG----------NAEVLKLWDVE 297 (517)
Q Consensus 233 ~~~~l~t~~~-d----g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iwd~~ 297 (517)
+++.+++... + +.|.++|..+. +.+.++.....+ .++++||+++++++. .++.|.++|..
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~---~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTG---RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTT---EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCC---EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 5554444433 2 68999999766 444555544455 899999999988876 36789999999
Q ss_pred CCcEEEEeCCC-------CCceEEEEEeCCCCeEEEeeC--CCceeEEEEeCCCCeeE-eeeCcCCCceEEEEEccCC-C
Q 042434 298 TGICKHTFGDH-------GFIVSSCAWFPDSKRLVCGSS--DTEKGIFMCDCDGNEIK-AWRGTRIPKVLDLAVTPDG-E 366 (517)
Q Consensus 298 ~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~~~~~--d~~v~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~ 366 (517)
+++.+..+.-. ......+.++|||++++++.. ++. |.++|.....+. .+.... . ....|++ .
T Consensus 158 t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~--VsVID~~t~kvv~~I~v~g---~--~~~~p~g~~ 230 (426)
T 3c75_H 158 TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA--VGVVDLEGKTFDRMLDVPD---C--YHIFPASPT 230 (426)
T ss_dssp TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE--EEEEETTTTEEEEEEECCS---E--EEEEEEETT
T ss_pred CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe--EEEEECCCCeEEEEEEcCC---c--eeeccCCCc
Confidence 99988876421 233567899999999999875 355 888899875553 333322 1 2233433 4
Q ss_pred EEEEEeCCCcEEEEECCCceEEe-----ecc-CCC-eeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccc-eEEeCc---
Q 042434 367 NLISVLSDKDIRILNLGTYAERV-----ISE-EHP-ITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKP-FKYTGH--- 435 (517)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~~~~-----~~~-~~~-i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~--- 435 (517)
.+++.+.||.+.+.+..+++... +.. ..+ ...+.+.+++..++..+..+.+.+.|..+..... ..+...
T Consensus 231 ~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~ 310 (426)
T 3c75_H 231 VFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEA 310 (426)
T ss_dssp EEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTT
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccc
Confidence 56666777887777775444211 111 111 1245678999888888888999999986532111 111100
Q ss_pred c-cCceEE---EeecCCCCCcEEEEecC----------CCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEee
Q 042434 436 S-QNKYVI---RSCFGGLDGTFIASGSE----------NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 436 ~-~~~~~i---~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~ 501 (517)
. ...... ..+.++++++.+++... ++.|.++|..+++.+.++... ....+++|+|++..+++++.
T Consensus 311 ~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n 389 (426)
T 3c75_H 311 ERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALS 389 (426)
T ss_dssp TGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEE
T ss_pred ccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEc
Confidence 0 000000 01234788887776542 357999999999999988742 35889999999942666666
Q ss_pred -CCCcEEEeCCCCCCC
Q 042434 502 -DDHTIRIWGPCQSSE 516 (517)
Q Consensus 502 -~dg~v~iw~~~~~~~ 516 (517)
.++.|.++|+.+.+.
T Consensus 390 ~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 390 AGTQTLHIYDAATGEE 405 (426)
T ss_dssp TTTTEEEEEETTTCCE
T ss_pred CCCCeEEEEECCCCCE
Confidence 699999999998764
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.54 E-value=8.9e-12 Score=119.84 Aligned_cols=238 Identities=11% Similarity=0.011 Sum_probs=159.5
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC--eEEEEECCCC
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE--VLKLWDVETG 299 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~ 299 (517)
-.....++|+++|+++++...++.|++||..++.. ...... ..... ++|+|+++.|+++..++ .|.+|+..++
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~---~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV---TTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE---EEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE---EEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence 35788999999999888877789999999865422 222222 23334 99999999999888766 7999998776
Q ss_pred cEEEEe----CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEee----eCcCCCce-E-EEEEccC-CCEE
Q 042434 300 ICKHTF----GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAW----RGTRIPKV-L-DLAVTPD-GENL 368 (517)
Q Consensus 300 ~~~~~~----~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~----~~~~~~~i-~-~~~~~~~-~~~l 368 (517)
.....+ ......+.+++++|++..|+++..++. |+.|+..+.....+ ........ . .++|+|+ +..+
T Consensus 205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~--I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKN--FGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCE--EEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCc--EEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence 554444 224566788999996556666666666 99999886655444 21111112 2 8999995 5555
Q ss_pred EEEeCCCcEEEEECCCceEEeecc---------------CCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceEE
Q 042434 369 ISVLSDKDIRILNLGTYAERVISE---------------EHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPFKY 432 (517)
Q Consensus 369 ~~~~~dg~i~i~d~~~~~~~~~~~---------------~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~ 432 (517)
++-..++.|+.|+........... -.....++++|+|+.+++-+ .++.|+.||+.++ . +..+
T Consensus 283 v~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G-~-v~~~ 360 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG-Y-VSTV 360 (409)
T ss_dssp EEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT-E-EEEE
T ss_pred EEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC-E-EEEE
Confidence 555667899999987644333222 13478999999999777777 8899999997654 2 3333
Q ss_pred eCccc------------CceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434 433 TGHSQ------------NKYVIRSCFGGLDGTFIASGSENSQIYIWNR 468 (517)
Q Consensus 433 ~~~~~------------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 468 (517)
.++.. .......++++++|.++++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 33210 0111334445777777777777777777664
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.54 E-value=7e-11 Score=108.76 Aligned_cols=237 Identities=11% Similarity=0.002 Sum_probs=168.1
Q ss_pred cCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEE-EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC
Q 042434 265 SHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH-TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN 343 (517)
Q Consensus 265 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~ 343 (517)
.....+.++++.++|+..++...++.|.+||.. ++... .+......+.++++.+++..+++...++. |+.++..+.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~--v~~~d~~g~ 93 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANK--IGKLSKKGG 93 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE--EEEECTTSC
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCe--EEEECCCCC
Confidence 345678999999999988877778999999987 65443 22233467899999999987777666666 888888844
Q ss_pred eeEeeeCc-CCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEe-e-ccCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 042434 344 EIKAWRGT-RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERV-I-SEEHPITSLSVSVDCKNFIVNLNSQEIHM 419 (517)
Q Consensus 344 ~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~-~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~~ 419 (517)
. ..+... ....+.++++.++|+.+++...++.|..+|.. +. ... . .....+..+++.++++.+++...++.|..
T Consensus 94 ~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 171 (300)
T 2qc5_A 94 F-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR 171 (300)
T ss_dssp E-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred e-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence 3 333321 23468899999999988877778899999987 44 222 1 23456889999999996666666889999
Q ss_pred EEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEE-ecCCCCCeeEEEecCCCCcEEE
Q 042434 420 WDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEI-LSGHSMTVNCVSWNPKRPKMLA 498 (517)
Q Consensus 420 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~l~ 498 (517)
||.... .. .+..... ......+.++++|++.++....+.|.+||. +++.... +..+...+.+++++++| .+++
T Consensus 172 ~~~~g~-~~--~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g-~l~v 245 (300)
T 2qc5_A 172 ITNTGK-LE--EYPLPTN-AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNS-EIWF 245 (300)
T ss_dssp ECTTCC-EE--EEECSST-TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTT-CEEE
T ss_pred ECCCCc-EE--EeeCCCC-CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCC-CEEE
Confidence 998332 22 2221111 112344455788988777777788999998 5554432 33455678999999998 6777
Q ss_pred EeeCCCcEEEeCCC
Q 042434 499 SASDDHTIRIWGPC 512 (517)
Q Consensus 499 s~~~dg~v~iw~~~ 512 (517)
+...++.|..|+..
T Consensus 246 ~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 246 TEWGANQIGRITND 259 (300)
T ss_dssp EETTTTEEEEECTT
T ss_pred eccCCCeEEEECCC
Confidence 66667889999873
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.53 E-value=1.6e-11 Score=114.07 Aligned_cols=243 Identities=12% Similarity=0.087 Sum_probs=160.9
Q ss_pred ccccCcEEEEEECCCCCEEEE-------eeCCCcEEEEEecCCCeeeEEEE--eccCCCCEEEEEECCC-CCeEEEEeCC
Q 042434 219 TEHKNEVWFVQFSNNGEYLAS-------SSSDCSAIIWKVLEDSKLTLKHT--LRSHQNPVSFVAWSPD-DTKLLTCGNA 288 (517)
Q Consensus 219 ~~h~~~v~~~~~s~~~~~l~t-------~~~dg~i~iw~~~~~~~~~~~~~--~~~h~~~v~~l~~s~~-~~~l~s~~~d 288 (517)
...-....+++|+++|.++++ +..++.|.+|+..++.. ..... ..++...+.+++++++ ++++++. ..
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~ 91 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-TVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MR 91 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-EEEECCEETTEECCEEEEEECSSSSEEEEEE-TT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE-EEEEecccCCCCCCCceEEEecCCCcEEEEE-CC
Confidence 344456689999999988888 67788999999765532 11110 0124467899999999 6655544 44
Q ss_pred CeEEEEECCCCcEEEE-eCC----CCCceEEEEEeCCCCeEEEeeCCC-------------ceeEEEEeCCCCeeEeeeC
Q 042434 289 EVLKLWDVETGICKHT-FGD----HGFIVSSCAWFPDSKRLVCGSSDT-------------EKGIFMCDCDGNEIKAWRG 350 (517)
Q Consensus 289 g~i~iwd~~~~~~~~~-~~~----~~~~v~~i~~~~~~~~l~~~~~d~-------------~v~i~~~~~~~~~~~~~~~ 350 (517)
+.|.+||.. ++.... ... ....+.++++.++|+.+++...++ ...++.++..+........
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~ 170 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTA 170 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEE
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccC
Confidence 579999998 765443 221 124578999999998877766541 1348889877443322221
Q ss_pred cCCCceEEEEEc----cCCCEEEEE-eCCCcEEEEECC-CceE----Eee--c-cC-CCeeEEEEcCCCCEEEEEeCCCe
Q 042434 351 TRIPKVLDLAVT----PDGENLISV-LSDKDIRILNLG-TYAE----RVI--S-EE-HPITSLSVSVDCKNFIVNLNSQE 416 (517)
Q Consensus 351 ~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~----~~~--~-~~-~~i~~~~~s~~~~~l~~~~~d~~ 416 (517)
......++++ |+++.++++ ..++.|.+||.. ++.. ... . +. ..+..++++++|+.+++...++.
T Consensus 171 --~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 171 --FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp --ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred --CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 1246788999 999766555 467899999976 3321 111 1 11 45788999999988888878899
Q ss_pred EEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE-EEecCCCcEEEEecCC
Q 042434 417 IHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI-ASGSENSQIYIWNRRN 470 (517)
Q Consensus 417 i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~iwd~~~ 470 (517)
|..||..++ .....+..+... +..+.++++|+.| ++...++.|..|++..
T Consensus 249 i~~~d~~~g-~~~~~~~~~~~~---~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGG-QPKMRIRCPFEK---PSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCB-SCSEEEECSSSC---EEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCC-cEeEEEeCCCCC---ceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999998744 333344333222 4445558999855 4555668899999764
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.51 E-value=5.6e-12 Score=116.62 Aligned_cols=233 Identities=14% Similarity=0.130 Sum_probs=153.6
Q ss_pred eccCCCCEEEEEECCCCC-eEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC
Q 042434 263 LRSHQNPVSFVAWSPDDT-KLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD 341 (517)
Q Consensus 263 ~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~ 341 (517)
+..+........|+|+++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++. |+.++..
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~--v~~~~~~ 115 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRA--ITRSDAD 115 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTE--EEEECTT
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCE--EEEECCC
Confidence 333455678899999998 5667777889999998 454 3445456677899999999997666555555 8888877
Q ss_pred CCeeEeeeC----cCCCceEEEEEccCCCEEEE----EeC-------------CCcEEEEECCCce-EEeeccCCCeeEE
Q 042434 342 GNEIKAWRG----TRIPKVLDLAVTPDGENLIS----VLS-------------DKDIRILNLGTYA-ERVISEEHPITSL 399 (517)
Q Consensus 342 ~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~-~~~~~~~~~i~~~ 399 (517)
+. ...+.. .....+.+++++++|+..++ |.. .+.|..||..+++ .... .......+
T Consensus 116 g~-~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl 193 (305)
T 3dr2_A 116 GQ-AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGL 193 (305)
T ss_dssp SC-EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEE
T ss_pred CC-EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcce
Confidence 54 332221 11234678999999998876 332 2568888876665 2222 44567889
Q ss_pred EEcCCCCEEEEEeCC------CeEEEEEcCCCCcc-ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc
Q 042434 400 SVSVDCKNFIVNLNS------QEIHMWDVAGKWEK-PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK 472 (517)
Q Consensus 400 ~~s~~~~~l~~~~~d------~~i~~~d~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 472 (517)
+|+|+++.++++... +.|..|++...... ...+..... .....+.++++|++ .+++.+| |.+|+. .++
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~--~~pdgi~~d~~G~l-wv~~~~g-v~~~~~-~g~ 268 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPD--GLPDGFCVDRGGWL-WSSSGTG-VCVFDS-DGQ 268 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSS--SCCCSEEECTTSCE-EECCSSE-EEEECT-TSC
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCC--CCCCeEEECCCCCE-EEecCCc-EEEECC-CCC
Confidence 999999988877665 78999998654200 011111000 01123344788884 4444554 999997 577
Q ss_pred eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEE
Q 042434 473 PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRI 508 (517)
Q Consensus 473 ~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~i 508 (517)
.+..+..+. .+.+++|.|++ ..|+.++.++..++
T Consensus 269 ~~~~~~~~~-~~~~~~f~~d~-~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 269 LLGHIPTPG-TASNCTFDQAQ-QRLFITGGPCLWML 302 (305)
T ss_dssp EEEEEECSS-CCCEEEECTTS-CEEEEEETTEEEEE
T ss_pred EEEEEECCC-ceeEEEEeCCC-CEEEEEcCCeEEEE
Confidence 777777555 58999999988 56666666654443
No 212
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.50 E-value=8e-12 Score=118.98 Aligned_cols=261 Identities=12% Similarity=0.056 Sum_probs=170.8
Q ss_pred CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEee----------CCCcEEEEEecCCCeeeEEEEec--c---CC
Q 042434 203 HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSS----------SDCSAIIWKVLEDSKLTLKHTLR--S---HQ 267 (517)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~--~---h~ 267 (517)
....+|....+.+..+..-..+ .+++||||++|+++. .++.|.++|..+......+. +. . ..
T Consensus 100 ~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g 176 (426)
T 3c75_H 100 QQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVG 176 (426)
T ss_dssp EEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBS
T ss_pred eEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccC
Confidence 4445666677777777755556 899999999888775 36789999997664333222 11 0 01
Q ss_pred CCEEEEEECCCCCeEEEEeC--CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCC-CeEEEeeCCCceeEEEEeCCCCe
Q 042434 268 NPVSFVAWSPDDTKLLTCGN--AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDS-KRLVCGSSDTEKGIFMCDCDGNE 344 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~d~~v~i~~~~~~~~~ 344 (517)
.....+.|+|||++++++.. ++.|.+.|+.+++.+.++..... ....|++ ..+++.+.||. +...+.....
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~--~~~V~~~~~~ 250 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGS--LARVDFADGE 250 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSS--EEEEECCTTC
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCC--EEEEECCCCc
Confidence 23467899999999998864 57999999999999888754321 2223332 44455556665 4444443222
Q ss_pred eE-----eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeec--------------cCCCeeEEEEcCCC
Q 042434 345 IK-----AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVIS--------------EEHPITSLSVSVDC 405 (517)
Q Consensus 345 ~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------~~~~i~~~~~s~~~ 405 (517)
+. .+..........+.+.+++..++..+..+.+.+.|..+....... .......++++|++
T Consensus 251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg 330 (426)
T 3c75_H 251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS 330 (426)
T ss_dssp CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence 21 111111111234567899998888888899999998765421111 01122337899999
Q ss_pred CEEEEEeC----------CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc-EEEEec-CCCcEEEEecCCCce
Q 042434 406 KNFIVNLN----------SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT-FIASGS-ENSQIYIWNRRNSKP 473 (517)
Q Consensus 406 ~~l~~~~~----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~ 473 (517)
+.+++... ++.|.++|..+. +.+..+.... ....+.++|||+ ++++.. .++.|.++|..+++.
T Consensus 331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~-kvv~~I~vg~----~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 331 DRIYLLVDQRDEWKHKAASRFVVVLNAETG-ERINKIELGH----EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTC-CEEEEEEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CEEEEEecccccccccCCCCEEEEEECCCC-eEEEEEECCC----CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 88777643 357999999887 5554443222 133445589999 888887 589999999999999
Q ss_pred eEEe
Q 042434 474 IEIL 477 (517)
Q Consensus 474 ~~~~ 477 (517)
+.++
T Consensus 406 v~tI 409 (426)
T 3c75_H 406 LRSV 409 (426)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9887
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.50 E-value=5.3e-11 Score=111.04 Aligned_cols=225 Identities=13% Similarity=0.114 Sum_probs=150.3
Q ss_pred EEEEEECCCC-CeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEee
Q 042434 270 VSFVAWSPDD-TKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAW 348 (517)
Q Consensus 270 v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~ 348 (517)
..+..|+|++ ..+++...++.|..||..+++.. .+. ....+.+++|+++|+++++. .++ ++.|+..+..+..+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~g---l~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DDG---LFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TTE---EEEEETTTCCEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CCC---EEEEECCCCcEEEE
Confidence 4667899975 45566667889999999887643 332 34679999999999877654 443 88999876655444
Q ss_pred eCc----CCCceEEEEEccCCCEEEEEeC------CCcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEE-eCCCe
Q 042434 349 RGT----RIPKVLDLAVTPDGENLISVLS------DKDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVN-LNSQE 416 (517)
Q Consensus 349 ~~~----~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~ 416 (517)
... ....+.++.++|+|+.+++... .+.|..+| +++ ............++|+|+++.++++ +.++.
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 322 1235889999999997665442 25677777 344 2222333456789999999877655 45789
Q ss_pred EEEEEcC--CC-Cc-cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEec-C
Q 042434 417 IHMWDVA--GK-WE-KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWN-P 491 (517)
Q Consensus 417 i~~~d~~--~~-~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~-~ 491 (517)
|.+||+. ++ .. ....+............+.++++|++.++...++.|.+||. +++.+..+..+...+++++|. |
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGP 281 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEEST
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecC
Confidence 9999985 33 11 11122111111122344555889987777766788999998 677778887777789999998 8
Q ss_pred CCCcEEEEeeCC
Q 042434 492 KRPKMLASASDD 503 (517)
Q Consensus 492 ~~~~~l~s~~~d 503 (517)
++..++++...+
T Consensus 282 d~~~L~vt~~~~ 293 (326)
T 2ghs_A 282 DASRLLVTSARE 293 (326)
T ss_dssp TSCEEEEEEBCT
T ss_pred CCCEEEEEecCC
Confidence 874455555544
No 214
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.47 E-value=3e-12 Score=119.93 Aligned_cols=252 Identities=6% Similarity=-0.071 Sum_probs=165.8
Q ss_pred cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe----------CCCeEEEEECCCCcEEEEeCCC------
Q 042434 245 SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG----------NAEVLKLWDVETGICKHTFGDH------ 308 (517)
Q Consensus 245 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~------ 308 (517)
+|.++|..+. +.+.++.....+ .+.++||+++++++. .++.|.+||..+++.+.++...
T Consensus 47 ~vsvID~~t~---~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCG---VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTT---EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCC---eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 7889998665 445555545556 799999999998886 3679999999999999887533
Q ss_pred -CCceEEEEEeCCCCeEEEeeCC--CceeEEE--EeCCCCeeEeeeCcCCCceEEEEEccCCC-EEEEEeCCCcEEEEEC
Q 042434 309 -GFIVSSCAWFPDSKRLVCGSSD--TEKGIFM--CDCDGNEIKAWRGTRIPKVLDLAVTPDGE-NLISVLSDKDIRILNL 382 (517)
Q Consensus 309 -~~~v~~i~~~~~~~~l~~~~~d--~~v~i~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~ 382 (517)
......++++|||++++++... .. +.+ +|..+ +..+.... . ..+.|+++ .+++.+.||.+.+.|+
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~--v~V~~iD~~t--v~~i~v~~--~---~~~~p~g~~~~~~~~~dg~~~~vd~ 192 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAA--AGLSVPGASD--DQLTKSAS--C---FHIHPGAAATHYLGSCPASLAASDL 192 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCE--EEEEETTTEE--EEEEECSS--C---CCCEEEETTEEECCCCTTSCEEEEC
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCe--EEEEEEchhh--ceEEECCC--c---eEEccCCCeEEEEEcCCCCEEEEEC
Confidence 1235679999999999998753 44 555 77665 33333221 1 11234443 4556677888888888
Q ss_pred CC-----ceEEe-----e-ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc-ceEEeCc----ccCceEE---E
Q 042434 383 GT-----YAERV-----I-SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK-PFKYTGH----SQNKYVI---R 443 (517)
Q Consensus 383 ~~-----~~~~~-----~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~----~~~~~~i---~ 443 (517)
.+ ++... . ....+. . ++++..++..+. +.+.+.|..+.... ...+... ....... .
T Consensus 193 ~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~ 267 (368)
T 1mda_H 193 AAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp CSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred ccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence 76 33110 1 112222 3 666666666666 99999998643111 1111100 0000100 1
Q ss_pred eecCCCCCcEEEEecC---------CCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEee-CCCcEEEeCCCC
Q 042434 444 SCFGGLDGTFIASGSE---------NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASAS-DDHTIRIWGPCQ 513 (517)
Q Consensus 444 ~~~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~v~iw~~~~ 513 (517)
.+.+++|++.++++.. ++.+.++|+.+++.+.++.... ...+++|+|++..++++.. .++.|.++|+.+
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 1235889888876543 2356699999999998887543 6889999999965788888 699999999998
Q ss_pred CCC
Q 042434 514 SSE 516 (517)
Q Consensus 514 ~~~ 516 (517)
++.
T Consensus 347 ~kv 349 (368)
T 1mda_H 347 DQD 349 (368)
T ss_dssp CEE
T ss_pred CcE
Confidence 763
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.45 E-value=8.2e-12 Score=129.07 Aligned_cols=241 Identities=15% Similarity=0.178 Sum_probs=156.2
Q ss_pred cccCcEEEEEECCCCCEEEEe-----eCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC-----
Q 042434 220 EHKNEVWFVQFSNNGEYLASS-----SSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE----- 289 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~~l~t~-----~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg----- 289 (517)
+|...+..++|||||++||.+ +....|++||+.++..... .+... ....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKDV--KFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEEE--ESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCCc--eeccEEEe-CCCEEEEEEecCccccc
Confidence 466789999999999999854 2335799999987754322 22111 12467899 999999888774
Q ss_pred --------eEEEEECCCCcE--EEEe--CC-CCCceEEEEEeCCCCeEEEeeC-CCc-eeEEEEeCCCC--eeEeeeCcC
Q 042434 290 --------VLKLWDVETGIC--KHTF--GD-HGFIVSSCAWFPDSKRLVCGSS-DTE-KGIFMCDCDGN--EIKAWRGTR 352 (517)
Q Consensus 290 --------~i~iwd~~~~~~--~~~~--~~-~~~~v~~i~~~~~~~~l~~~~~-d~~-v~i~~~~~~~~--~~~~~~~~~ 352 (517)
.|++|++.++.. ...+ .. +...+.++.|+|||++|+.... ++. -.+|+++..+. ....+....
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~ 280 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDL 280 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSS
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCC
Confidence 399999987642 2233 33 4456788999999998866543 222 24999998654 444444443
Q ss_pred CCceEEEEEccCCCEEEEEeC----CCcEEEEECCCce----EEeeccCCCeeEEEEcCCCCEEEEEeCCC---eEEEEE
Q 042434 353 IPKVLDLAVTPDGENLISVLS----DKDIRILNLGTYA----ERVISEEHPITSLSVSVDCKNFIVNLNSQ---EIHMWD 421 (517)
Q Consensus 353 ~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~---~i~~~d 421 (517)
. ..... ++++|..++..+. .+.|..+|+.+.. .....+...+. .|+++++.++....++ .|++||
T Consensus 281 ~-~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 281 D-ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp S-SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred C-ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence 2 33333 6677776655543 2579999998754 33444544444 8999999888776644 688999
Q ss_pred cCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC----CcEEEEecCCCce
Q 042434 422 VAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN----SQIYIWNRRNSKP 473 (517)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~ 473 (517)
+.+.. ...+.... ...+....+++++..++....+ ++|+.||+.+++.
T Consensus 357 ~~g~~--~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 357 YEGKR--VREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TTSCE--EEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CCCCe--eEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 87542 22222111 1124445557787766655444 7899999987763
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.45 E-value=1.5e-11 Score=127.15 Aligned_cols=241 Identities=12% Similarity=0.101 Sum_probs=157.4
Q ss_pred CCCCEEEEEECCCCCeEEEEe-----CCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc--------
Q 042434 266 HQNPVSFVAWSPDDTKLLTCG-----NAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE-------- 332 (517)
Q Consensus 266 h~~~v~~l~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~-------- 332 (517)
|...+..++|||||++||.+. ....|++||+.+|+.+... ........++|+ |++.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 556788999999999988532 2347999999999865531 111113567899 9999998887742
Q ss_pred ---eeEEEEeCCCCe---eEeeeCc--CCCceEEEEEccCCCEEEEEeC----CCcEEEEECCCce---EEeeccCCCee
Q 042434 333 ---KGIFMCDCDGNE---IKAWRGT--RIPKVLDLAVTPDGENLISVLS----DKDIRILNLGTYA---ERVISEEHPIT 397 (517)
Q Consensus 333 ---v~i~~~~~~~~~---~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~---~~~~~~~~~i~ 397 (517)
-.|+.|+..+.. ...+... +......+.++|||++++.... +..|+++|+.+.. ...........
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 448889887533 2222222 2234778999999998865443 2489999997763 33333444444
Q ss_pred EEEEcCCCCEEEEEeC----CCeEEEEEcCCCCc-cceEEeCcccCceEEEeecCCCCCcEEEEecCC-C--cEEEEecC
Q 042434 398 SLSVSVDCKNFIVNLN----SQEIHMWDVAGKWE-KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-S--QIYIWNRR 469 (517)
Q Consensus 398 ~~~~s~~~~~l~~~~~----d~~i~~~d~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iwd~~ 469 (517)
.. ++++|+.++..+. .+.|..+|+.+... ....+..+.... + .+++++++|+....+ | .|++||+.
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~--~---~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV--L---TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC--E---EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE--E---EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 43 6777777666554 25799999876522 123455554432 2 347788877766554 3 68999987
Q ss_pred CCceeEEec-CCCCCeeEEEecCCCCcEEEEeeCC---CcEEEeCCCCCC
Q 042434 470 NSKPIEILS-GHSMTVNCVSWNPKRPKMLASASDD---HTIRIWGPCQSS 515 (517)
Q Consensus 470 ~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~d---g~v~iw~~~~~~ 515 (517)
.+. ...+. .+.+.+..+.++|++..++++.+.. +.|..||+.+++
T Consensus 359 g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 359 GKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp SCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 544 44443 3456678888898885555555432 789999987764
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.45 E-value=2.5e-10 Score=105.05 Aligned_cols=229 Identities=11% Similarity=0.013 Sum_probs=151.7
Q ss_pred eccccCcEEEEEECCC-CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434 218 LTEHKNEVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV 296 (517)
Q Consensus 218 l~~h~~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 296 (517)
+..+..-.-+..|+|+ +.++++...++.|..||..++.. ..+ .....+.+++++++|+++++ . ++.|.+||.
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~----~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~ 80 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV----QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNW 80 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE----EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEET
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE----EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEEC
Confidence 4445556678899995 55666666788999999875432 122 24578999999999995554 3 568999999
Q ss_pred CCCcEEEEeCC----CCCceEEEEEeCCCCeEEEeeCC---------CceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc
Q 042434 297 ETGICKHTFGD----HGFIVSSCAWFPDSKRLVCGSSD---------TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP 363 (517)
Q Consensus 297 ~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~~d---------~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 363 (517)
.+++....... ....+..+++.|+|+++++.... ....++.++..+......... .....++|+|
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~--~~pngi~~sp 158 (297)
T 3g4e_A 81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQV--DISNGLDWSL 158 (297)
T ss_dssp TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEE--SBEEEEEECT
T ss_pred CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecc--ccccceEEcC
Confidence 88865433321 23457889999999976654322 233588888775443332222 2567899999
Q ss_pred CCCEEEE-EeCCCcEEEEECC--CceE----Eee---ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe
Q 042434 364 DGENLIS-VLSDKDIRILNLG--TYAE----RVI---SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT 433 (517)
Q Consensus 364 ~~~~l~~-~~~dg~i~i~d~~--~~~~----~~~---~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 433 (517)
+++.++. .+.++.|.+||+. ++.. ... .....+..++++++|+..++...++.|..||..++ .....+.
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG-~~~~~i~ 237 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG-KRLQTVK 237 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC-CEEEEEE
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc-eEEEEEE
Confidence 9997654 4557889999873 3321 111 12346788999999988887778889999998755 4444444
Q ss_pred CcccCceEEEeecCC-CCCcEEEEecC
Q 042434 434 GHSQNKYVIRSCFGG-LDGTFIASGSE 459 (517)
Q Consensus 434 ~~~~~~~~i~~~~~s-~~~~~l~~~~~ 459 (517)
..... +.+++|+ |+++.|++++.
T Consensus 238 ~p~~~---~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 238 LPVDK---TTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CSSSB---EEEEEEESGGGCEEEEEEB
T ss_pred CCCCC---ceEEEEeCCCCCEEEEEcC
Confidence 33222 3444454 77776655543
No 218
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.43 E-value=2.8e-12 Score=120.35 Aligned_cols=172 Identities=18% Similarity=0.128 Sum_probs=132.9
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEecCCC--------eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434 224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDS--------KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD 295 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~--------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 295 (517)
.++.+++++...++++|+.++ +.+|++.... ....... ..+.. |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999999999999985 6669874322 0122112 23566 999999 89999998 889999999
Q ss_pred CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCC
Q 042434 296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDK 375 (517)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 375 (517)
+.+.........+...+.++.+.+. .+++++.||. +++|+......... ...|.+++|+|+| ++.|..||
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~--L~v~dl~~~~~~~~----~~~Vs~v~WSpkG--~~vg~~dg 182 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVND--LSALDLRTKSTKQL----AQNVTSFDVTNSQ--LAVLLKDR 182 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSE--EEEEETTTCCEEEE----EESEEEEEECSSE--EEEEETTS
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCC--EEEEEccCCccccc----cCCceEEEEcCCc--eEEEEcCC
Confidence 9877666666677778888887765 3888999999 88999986554332 2379999999999 78899999
Q ss_pred cEEEEECCCce---EEee----------ccCCCeeEEEEcCCCCEEEEE
Q 042434 376 DIRILNLGTYA---ERVI----------SEEHPITSLSVSVDCKNFIVN 411 (517)
Q Consensus 376 ~i~i~d~~~~~---~~~~----------~~~~~i~~~~~s~~~~~l~~~ 411 (517)
.+++|+..... ...+ .+...|.++.|.+++.++++-
T Consensus 183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 183 SFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp CEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred cEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 99999887766 2223 256789999999999888764
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.43 E-value=2.2e-11 Score=114.64 Aligned_cols=265 Identities=8% Similarity=-0.046 Sum_probs=166.5
Q ss_pred CcEEEEEECCCCCEEEEee--CCCcEEEEEecCCCeeeEEE----EeccCCCCEEEEEECCCCCeEEEEeC-----CCeE
Q 042434 223 NEVWFVQFSNNGEYLASSS--SDCSAIIWKVLEDSKLTLKH----TLRSHQNPVSFVAWSPDDTKLLTCGN-----AEVL 291 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~--~dg~i~iw~~~~~~~~~~~~----~~~~h~~~v~~l~~s~~~~~l~s~~~-----dg~i 291 (517)
..+..++++|+|+++++.. .++.++||.+.+ ....... ....|-..+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 7899999999999988864 234466777652 2221110 01134568999999999876665433 5789
Q ss_pred EEEECCCCcEEEEeCCC------CCceEEEEEeCCCCeEEEee----CCCceeEEEEeCCCCeeEeeeCcCCCc-eEEEE
Q 042434 292 KLWDVETGICKHTFGDH------GFIVSSCAWFPDSKRLVCGS----SDTEKGIFMCDCDGNEIKAWRGTRIPK-VLDLA 360 (517)
Q Consensus 292 ~iwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~~~~----~d~~v~i~~~~~~~~~~~~~~~~~~~~-i~~~~ 360 (517)
.+||+.+++.+..+... ...+..+++++++..++.+. .++. |++|+..+.........+... .....
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~--i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA--LIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE--EEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe--EEEEECCCCCEEEEecCCCcccccccc
Confidence 99999999877666422 23568899998655554443 3455 889998755544433221100 00133
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCC-eEEEEEcC---CCC----cc--ce
Q 042434 361 VTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQ-EIHMWDVA---GKW----EK--PF 430 (517)
Q Consensus 361 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~-~i~~~d~~---~~~----~~--~~ 430 (517)
+.++|..+.+.+.++.+..|. ..+..++++|+++.++++...+ .+..++.. ... .. ..
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPH------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI 241 (343)
T ss_dssp CEETTEECBEECTTSCEECCC------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred eeECCEEEEeccCCCceecee------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence 445676666677777765553 2467899999999888887665 56555542 110 00 00
Q ss_pred EEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcE
Q 042434 431 KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTI 506 (517)
Q Consensus 431 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v 506 (517)
...++... ...++++++|+++++...++.|.+||..+++....... +...+.+++|.+++ .++++.+..+.+
T Consensus 242 ~~~g~~g~---pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g-~l~v~~~~~~~~ 314 (343)
T 2qe8_A 242 ERYSEKPI---CDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG-YLYFDCNQLHHS 314 (343)
T ss_dssp EEEEECCS---CSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS-CEEEEECCGGGS
T ss_pred EecccCCC---CceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC-cEEEEeCccccc
Confidence 11111111 12234478999999999999999999866764333322 24568999999998 677777644433
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.42 E-value=8e-11 Score=108.81 Aligned_cols=239 Identities=10% Similarity=0.035 Sum_probs=157.0
Q ss_pred cccEEEeccccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCe
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEV 290 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 290 (517)
...+..+..+........|+|+|+ +++++..++.|..|+.. +. . ..+..+...+..++++++|+++++...++.
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~---~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~ 108 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-V---DVLLDATAFTNGNAVDAQQRLVHCEHGRRA 108 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-E---EEEEESCSCEEEEEECTTSCEEEEETTTTE
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-E---EEEeCCCCccceeeECCCCCEEEEECCCCE
Confidence 344555656667778899999998 56677778899999873 32 2 234446677999999999997776666688
Q ss_pred EEEEECCCCcEEEEeCCC----CCceEEEEEeCCCCeEEE----eeCC-----------CceeEEEEeCCCCeeEeeeCc
Q 042434 291 LKLWDVETGICKHTFGDH----GFIVSSCAWFPDSKRLVC----GSSD-----------TEKGIFMCDCDGNEIKAWRGT 351 (517)
Q Consensus 291 i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~----~~~d-----------~~v~i~~~~~~~~~~~~~~~~ 351 (517)
|.+|+.. ++........ ...+..+++.++|+.+++ |..+ +...|+.++..+..+....
T Consensus 109 v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-- 185 (305)
T 3dr2_A 109 ITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-- 185 (305)
T ss_dssp EEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--
T ss_pred EEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--
Confidence 9999986 6543322111 234678999999998886 3321 1234999998654444433
Q ss_pred CCCceEEEEEccCCCEEEEEeCC------CcEEEEECCCce----EEe-eccCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 042434 352 RIPKVLDLAVTPDGENLISVLSD------KDIRILNLGTYA----ERV-ISEEHPITSLSVSVDCKNFIVNLNSQEIHMW 420 (517)
Q Consensus 352 ~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~----~~~-~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~ 420 (517)
.......++|+|+++.++++... +.|.+||+.... ... .........++++++|+ +.+++. +.|.+|
T Consensus 186 ~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~ 263 (305)
T 3dr2_A 186 DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVF 263 (305)
T ss_dssp EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEE
T ss_pred cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEE
Confidence 22357889999999988877665 789999986532 111 11233456789999998 444444 459999
Q ss_pred EcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434 421 DVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN 467 (517)
Q Consensus 421 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 467 (517)
+..+. ....+..... +..+.++++++.|+.++.++ ++.++
T Consensus 264 ~~~g~--~~~~~~~~~~----~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 264 DSDGQ--LLGHIPTPGT----ASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CTTSC--EEEEEECSSC----CCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CCCCC--EEEEEECCCc----eeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 98543 3334433321 33344468888888777654 44333
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.36 E-value=2.3e-09 Score=99.92 Aligned_cols=222 Identities=13% Similarity=0.026 Sum_probs=144.6
Q ss_pred CcEEEEEECCCC-CEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434 223 NEVWFVQFSNNG-EYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC 301 (517)
Q Consensus 223 ~~v~~~~~s~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 301 (517)
.-..+..|+|++ .++++...++.|..|+..++. .. .+. ....+.+++|+|+|+++++. .+ .|.+||..+++.
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~-~~---~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~ 121 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGR-KT---VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL 121 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE-EE---EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc-EE---EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE
Confidence 345678899974 556666678899999986542 21 222 35679999999999877764 34 599999988876
Q ss_pred EEEeCC----CCCceEEEEEeCCCCeEEEeeCC----CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE-e
Q 042434 302 KHTFGD----HGFIVSSCAWFPDSKRLVCGSSD----TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV-L 372 (517)
Q Consensus 302 ~~~~~~----~~~~v~~i~~~~~~~~l~~~~~d----~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~ 372 (517)
...... ....+.+++++|+|+++++...+ +...++.++ .+ ....+... ......++|+|+++.++.+ +
T Consensus 122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g-~~~~~~~~-~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KG-KVTKLFAD-ISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TT-EEEEEEEE-ESSEEEEEECTTSCEEEEEET
T ss_pred EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CC-cEEEeeCC-CcccCCeEEcCCCCEEEEEEC
Confidence 443321 12468899999999876655422 234488888 43 33333221 1246789999999877655 4
Q ss_pred CCCcEEEEECC--Cc-e----EEee---ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEE
Q 042434 373 SDKDIRILNLG--TY-A----ERVI---SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVI 442 (517)
Q Consensus 373 ~dg~i~i~d~~--~~-~----~~~~---~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i 442 (517)
.++.|.+||+. ++ . .... .....+..++++++|...++...++.|..||..+ .....+..... .+
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g--~~~~~i~~~~~---~~ 273 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG--NHIARYEVPGK---QT 273 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC--CEEEEEECSCS---BE
T ss_pred CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC--CEEEEEECCCC---Cc
Confidence 56899999985 44 2 1111 1234567899999998777777778999999843 33344433322 24
Q ss_pred EeecCC-CCCcEEEEecC
Q 042434 443 RSCFGG-LDGTFIASGSE 459 (517)
Q Consensus 443 ~~~~~s-~~~~~l~~~~~ 459 (517)
.++.++ ++++.|++++.
T Consensus 274 ~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 274 TCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEEESTTSCEEEEEEB
T ss_pred EEEEEecCCCCEEEEEec
Confidence 455555 77766654443
No 222
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.34 E-value=4.3e-11 Score=112.34 Aligned_cols=171 Identities=13% Similarity=0.099 Sum_probs=126.8
Q ss_pred ceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe---------eEe-eeCcCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 042434 311 IVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE---------IKA-WRGTRIPKVLDLAVTPDGENLISVLSDKDIRIL 380 (517)
Q Consensus 311 ~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~---------~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 380 (517)
++..+++++...++++|+.++ +.+|+...-. ... ....... |..++| +++.++++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~---l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK---AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE---EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE---EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 688999999999999999987 5557654211 111 1112233 999999 89999998 88999999
Q ss_pred ECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec
Q 042434 381 NLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS 458 (517)
Q Consensus 381 d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 458 (517)
|+++.. .....+..++.++.+.+. .+++++.||.+.+||+.+.... . +. ..+++++|+|+| ++.|.
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~-~----~~---~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK-Q----LA---QNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE-E----EE---ESEEEEEECSSE--EEEEE
T ss_pred EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc-c----cc---CCceEEEEcCCc--eEEEE
Confidence 998765 333445566777766654 3888999999999999865322 1 22 237788889999 67788
Q ss_pred CCCcEEEEecCCCce--eEEe------c---CCCCCeeEEEecCCCCcEEEEee
Q 042434 459 ENSQIYIWNRRNSKP--IEIL------S---GHSMTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 459 ~dg~i~iwd~~~~~~--~~~~------~---~h~~~v~~v~~~~~~~~~l~s~~ 501 (517)
.||++++|+...+.. ..++ . +|...|.+|.|.+++ .++++-+
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~y~ 232 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAVFG 232 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEEEE
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC-eEEEEEc
Confidence 999999999887775 5566 2 478899999999998 6776643
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.26 E-value=2.3e-10 Score=107.14 Aligned_cols=261 Identities=8% Similarity=-0.040 Sum_probs=164.3
Q ss_pred ccccCCCcccEEEeccccCcEEEEEECCCCCEEEEee----------CCCcEEEEEecCCCeeeEEEEeccC-------C
Q 042434 205 CGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSS----------SDCSAIIWKVLEDSKLTLKHTLRSH-------Q 267 (517)
Q Consensus 205 ~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~h-------~ 267 (517)
..+|....+.+.++.....+ .+.++|||++++++. .++.|.+||..+... ..++..+ .
T Consensus 49 svID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v---v~~I~v~~~~~~~~g 123 (368)
T 1mda_H 49 WVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP---IADIELPDAPRFSVG 123 (368)
T ss_dssp EEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE---EEEEEETTSCSCCBS
T ss_pred EEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE---EEEEECCCccccccC
Confidence 35666677888888765566 799999999998886 368899999977644 3444322 1
Q ss_pred CCEEEEEECCCCCeEEEEeC--CCeEEE--EECCCCcEEEEeCCCCCceEEEEEeCCCC-eEEEeeCCCceeEEEEeCCC
Q 042434 268 NPVSFVAWSPDDTKLLTCGN--AEVLKL--WDVETGICKHTFGDHGFIVSSCAWFPDSK-RLVCGSSDTEKGIFMCDCDG 342 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~d~~v~i~~~~~~~ 342 (517)
.....++++|||++++++.. +..+.+ +|+.+ +..+.... . ....|+++ .+++.+.||. +...+...
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~--~~~vd~~~ 194 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPAS--LAASDLAA 194 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTS--CEEEECCS
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCC--EEEEECcc
Confidence 23567899999999998864 457888 99877 44442211 1 11234443 4455566777 44455543
Q ss_pred -----CeeE-----eeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeec--------------cCCCeeE
Q 042434 343 -----NEIK-----AWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVIS--------------EEHPITS 398 (517)
Q Consensus 343 -----~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------~~~~i~~ 398 (517)
..+. .+.... .+. . .+++..++..+. +.+.+.|..+....... .......
T Consensus 195 ~~~~~~~v~~~~t~~i~vg~-~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~ 268 (368)
T 1mda_H 195 APAAAGIVGAQCTGAQNCSS-QAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM 268 (368)
T ss_dssp SCCCCEECCCCSCTTSCBCS-CCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred ccccCCeEEEEeeeeeeCCC-Ccc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCccee
Confidence 2211 011111 122 3 666676666666 99999999754311110 0111223
Q ss_pred EEEcCCCCEEEEEeC---------CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCc-EEEEec-CCCcEEEEe
Q 042434 399 LSVSVDCKNFIVNLN---------SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGT-FIASGS-ENSQIYIWN 467 (517)
Q Consensus 399 ~~~s~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd 467 (517)
++++|+++.++++.. ++.+.++|+.+. +.+..+.... ....+.+++||+ .+++.. .++.|.++|
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~-~vv~~i~vg~----~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG-QTSGPISNGH----DSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC-CEEECCEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC-eEEEEEECCC----CcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 789999999887643 246679999886 4444443222 133455589997 455555 589999999
Q ss_pred cCCCceeEEecCCCCCeeEEEecC
Q 042434 468 RRNSKPIEILSGHSMTVNCVSWNP 491 (517)
Q Consensus 468 ~~~~~~~~~~~~h~~~v~~v~~~~ 491 (517)
+.+++.+.++.... ....+++.+
T Consensus 344 ~~t~kvv~~I~vg~-~P~~i~~~~ 366 (368)
T 1mda_H 344 AASDQDQSSVELDK-GPESLSVQN 366 (368)
T ss_dssp SSSCEEEEECCCCS-CCCEEECCC
T ss_pred CCCCcEEEEEECCC-CCCEEEeec
Confidence 99999999998554 345666654
No 224
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.26 E-value=5.4e-09 Score=99.62 Aligned_cols=259 Identities=12% Similarity=0.051 Sum_probs=157.7
Q ss_pred CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCce
Q 042434 233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIV 312 (517)
Q Consensus 233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 312 (517)
++..++.++.++.|..+|..+++.. ............... .+..+++++.++.|..+|..+|+.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~---W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVA---WQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEE---EEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE---EEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 4557778888999999999777432 222222111111112 24578888899999999999999887765432111
Q ss_pred -----EEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCC------ceEEEEEcc--CCCEEEEEeCCCcEE
Q 042434 313 -----SSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIP------KVLDLAVTP--DGENLISVLSDKDIR 378 (517)
Q Consensus 313 -----~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~------~i~~~~~~~--~~~~l~~~~~dg~i~ 378 (517)
...... +..+++++.++. ++.+|..+ ...-........ .+..+...| .+..+++++.++.+.
T Consensus 177 ~~~~~~~~~~~--~~~v~~g~~~g~--l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~ 252 (376)
T 3q7m_A 177 SLRGESAPTTA--FGAAVVGGDNGR--VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLT 252 (376)
T ss_dssp --CCCCCCEEE--TTEEEECCTTTE--EEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEE
T ss_pred eecCCCCcEEE--CCEEEEEcCCCE--EEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEE
Confidence 112222 457788888887 88888764 333333221100 000000111 246788888899999
Q ss_pred EEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec
Q 042434 379 ILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS 458 (517)
Q Consensus 379 i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 458 (517)
.+|..+++............+.. ++..+++++.++.+..+|..++ ............. ..... ..+..|++++
T Consensus 253 ~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~--~~~~~--~~~~~l~v~~ 325 (376)
T 3q7m_A 253 ALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGG-VTLWTQSDLLHRL--LTSPV--LYNGNLVVGD 325 (376)
T ss_dssp EEETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTC-CEEEEECTTTTSC--CCCCE--EETTEEEEEC
T ss_pred EEECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCC-cEEEeecccCCCc--ccCCE--EECCEEEEEe
Confidence 99998887433333333444433 4678888889999999999877 3333333111110 00110 1346788888
Q ss_pred CCCcEEEEecCCCceeEEecCCCCCeeE-EEecCCCCcEEEEeeCCCcEEEeC
Q 042434 459 ENSQIYIWNRRNSKPIEILSGHSMTVNC-VSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 459 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
.+|.|+++|..+|+.+.........+.+ ... .++ .|+.++.||.|..|+
T Consensus 326 ~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~--~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 326 SEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADG--KLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETT--EEEEEBTTSCEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECC--EEEEEeCCCEEEEEe
Confidence 9999999999999988877654333332 222 234 577889999999886
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.23 E-value=8.3e-09 Score=98.33 Aligned_cols=265 Identities=5% Similarity=-0.093 Sum_probs=159.8
Q ss_pred CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccC-------CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe
Q 042434 233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSH-------QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF 305 (517)
Q Consensus 233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h-------~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 305 (517)
.+..+++++.++.|..+|..+++.. ....+... ...+.+. ...++..+++++.++.|..+|..+|+.+...
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEI-WSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEE-EEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCcee-eeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 4567777888899999998776432 11222111 2223221 1224567888889999999999999988766
Q ss_pred CCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC-CeeEeeeCcCCCc----eEEEEEccCCCEEEEEeCCCcEEEE
Q 042434 306 GDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG-NEIKAWRGTRIPK----VLDLAVTPDGENLISVLSDKDIRIL 380 (517)
Q Consensus 306 ~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~dg~i~i~ 380 (517)
............. +..+++++.++. ++.+|..+ ..+.......... ....... +..+++++.++.+..+
T Consensus 130 ~~~~~~~~~p~~~--~~~v~v~~~~g~--l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 130 KVAGEALSRPVVS--DGLVLIHTSNGQ--LQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp ECSSCCCSCCEEE--TTEEEEECTTSE--EEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred eCCCceEcCCEEE--CCEEEEEcCCCe--EEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 5432221112222 457788888887 88899764 4443333221100 0111222 4578888889999999
Q ss_pred ECCCceE-EeeccCCCe-----e---EEEEcC--CCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434 381 NLGTYAE-RVISEEHPI-----T---SLSVSV--DCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL 449 (517)
Q Consensus 381 d~~~~~~-~~~~~~~~i-----~---~~~~s~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 449 (517)
|..+++. .......+. . .+...| .+..+++++.++.+..+|..++ ......... ... .. ..
T Consensus 204 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG-~~~w~~~~~--~~~---~~--~~ 275 (376)
T 3q7m_A 204 LMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG-QIMWKRELG--SVN---DF--IV 275 (376)
T ss_dssp ETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC-CEEEEECCC--CEE---EE--EE
T ss_pred ECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC-cEEeeccCC--CCC---Cc--eE
Confidence 9988772 222211110 0 011111 3567888888999999999876 333333211 111 11 12
Q ss_pred CCcEEEEecCCCcEEEEecCCCceeEEecC-CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 450 DGTFIASGSENSQIYIWNRRNSKPIEILSG-HSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
++..++.++.+|.|+.+|..+|+.+..... ....+...... + ..++.++.+|.|.++|..+++.
T Consensus 276 ~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 276 DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEEETTTCCE
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEEECCCCcE
Confidence 456778888899999999999998877652 22233333333 3 3678888999999999988763
No 226
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.22 E-value=3.2e-08 Score=89.25 Aligned_cols=251 Identities=10% Similarity=0.002 Sum_probs=155.6
Q ss_pred CCEEEEeeCCCcEEEEEecCCCee--eEEEEeccCCCCEEEEEECCCCCeEEEE-eCCCeEEEEECCCCcEEEEeCCCCC
Q 042434 234 GEYLASSSSDCSAIIWKVLEDSKL--TLKHTLRSHQNPVSFVAWSPDDTKLLTC-GNAEVLKLWDVETGICKHTFGDHGF 310 (517)
Q Consensus 234 ~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~ 310 (517)
|.+|+.+.. +.|+.+++...... .....+......+..++|++++..|+.+ ..++.|..++...+.....+.....
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 345555554 47888887643211 0011111112357899999976655544 4578999999976654444433335
Q ss_pred ceEEEEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC---CCcEEEEECCCce
Q 042434 311 IVSSCAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS---DKDIRILNLGTYA 386 (517)
Q Consensus 311 ~v~~i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~ 386 (517)
....+++.+++..++.+.. .+. |..++..+.....+..........++++|++..++.+.. .+.|..+++....
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~--I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDR--IEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTE--EEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred CccEEEEEecCCeEEEEECCCCE--EEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC
Confidence 6789999997766665544 445 888888765444433323246789999997666665554 3688888886544
Q ss_pred EE-ee-ccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcE
Q 042434 387 ER-VI-SEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQI 463 (517)
Q Consensus 387 ~~-~~-~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 463 (517)
.. .. ........++++++++.++++. ..+.|..+|..+. .......+.. ....+ ... ++..+++...++.|
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~~~-~P~gi---~~d-~~~lyva~~~~~~v 231 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEGLQ-YPFAV---TSY-GKNLYYTDWKTNSV 231 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEECCC-SEEEE---EEE-TTEEEEEETTTTEE
T ss_pred cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEecCCC-CceEE---EEe-CCEEEEEECCCCeE
Confidence 22 22 2334678999999877665554 5679999998753 2222222211 11122 212 34444555566899
Q ss_pred EEEecCCCceeEEecCCC-CCeeEEEecCCC
Q 042434 464 YIWNRRNSKPIEILSGHS-MTVNCVSWNPKR 493 (517)
Q Consensus 464 ~iwd~~~~~~~~~~~~h~-~~v~~v~~~~~~ 493 (517)
.++|..+++.+..+.... ....++++.|++
T Consensus 232 ~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 232 IAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp EEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred EEEeCCCCCceEEEccccccccceeeecCcc
Confidence 999999999888886433 246788888876
No 227
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.20 E-value=2.1e-09 Score=110.13 Aligned_cols=258 Identities=9% Similarity=0.056 Sum_probs=161.0
Q ss_pred CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccC-C----CCEEE-EEECCCCCeEEEEeC------CCeEEEEECCCCc
Q 042434 233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSH-Q----NPVSF-VAWSPDDTKLLTCGN------AEVLKLWDVETGI 300 (517)
Q Consensus 233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h-~----~~v~~-l~~s~~~~~l~s~~~------dg~i~iwd~~~~~ 300 (517)
++..|++++.|+.+..+|..+++.. ..+..+ . ..+.+ ... .+..+++++. +|.|..+|..+|+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~---W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEV---WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGE 201 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEE---EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEE---eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCc
Confidence 4567888889999999999877543 333322 1 11111 011 2345555543 7899999999999
Q ss_pred EEEEeCCCCCc--------------------------------eEEEEEeCCCCeEEEeeCCCc----------------
Q 042434 301 CKHTFGDHGFI--------------------------------VSSCAWFPDSKRLVCGSSDTE---------------- 332 (517)
Q Consensus 301 ~~~~~~~~~~~--------------------------------v~~i~~~~~~~~l~~~~~d~~---------------- 332 (517)
.+..+...... ...+++.|++..++.++.++.
T Consensus 202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~ 281 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY 281 (677)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence 98776432111 124788898888888876642
Q ss_pred -eeEEEEeCCCCee-EeeeCcC--------CCceEEEEEccCC---CEEEEEeCCCcEEEEECCCceEEeeccC------
Q 042434 333 -KGIFMCDCDGNEI-KAWRGTR--------IPKVLDLAVTPDG---ENLISVLSDKDIRILNLGTYAERVISEE------ 393 (517)
Q Consensus 333 -v~i~~~~~~~~~~-~~~~~~~--------~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~------ 393 (517)
..|+-+|..+... -.+...+ ......+....+| ..++.++.+|.++++|..+++.......
T Consensus 282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~ 361 (677)
T 1kb0_A 282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA 361 (677)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence 1388888875443 3333211 1122223334477 6789999999999999998873211110
Q ss_pred -------CC------------------------eeEEEEcCCCCEEEEEeCC----------------------------
Q 042434 394 -------HP------------------------ITSLSVSVDCKNFIVNLNS---------------------------- 414 (517)
Q Consensus 394 -------~~------------------------i~~~~~s~~~~~l~~~~~d---------------------------- 414 (517)
.+ -..++++|++..+++...+
T Consensus 362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 441 (677)
T 1kb0_A 362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN 441 (677)
T ss_dssp EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence 00 1256889988888876432
Q ss_pred ---------------CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC
Q 042434 415 ---------------QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG 479 (517)
Q Consensus 415 ---------------~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 479 (517)
+.|..||+.++ +....+...... . ...+..++..++.++.||.+++||.++|+.+..+..
T Consensus 442 ~g~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~~~~-~---~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 442 TAKFFNAEPPKSKPFGRLLAWDPVAQ-KAAWSVEHVSPW-N---GGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp CCEEECSSCCCSCCEEEEEEEETTTT-EEEEEEEESSSC-C---CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cccccccccCCCCCccEEEEEeCCCC-cEEeecCCCCCC-c---CcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 67999999877 444444322111 0 011134677888899999999999999999999874
Q ss_pred CC-CCeeEEEecCCCCcEEEEe
Q 042434 480 HS-MTVNCVSWNPKRPKMLASA 500 (517)
Q Consensus 480 h~-~~v~~v~~~~~~~~~l~s~ 500 (517)
.. ....-+.|.++|..+++..
T Consensus 517 ~~~~~~~p~~y~~~G~~~v~~~ 538 (677)
T 1kb0_A 517 GTGVVAAPSTYMVDGRQYVSVA 538 (677)
T ss_dssp SSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCcccCCEEEEeCCEEEEEEe
Confidence 33 3334566777884455543
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.19 E-value=2.7e-13 Score=128.73 Aligned_cols=256 Identities=12% Similarity=-0.045 Sum_probs=133.6
Q ss_pred CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCC-c
Q 042434 233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGF-I 311 (517)
Q Consensus 233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~ 311 (517)
++..+++++.||.|+.||..+++.. ..+.. +.+.+..+..++..+++++.||.|..||..+|+.+..+..+.. .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~---W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIK---WTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEE---EEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE---EEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence 5778999999999999999877543 33333 4455555566787888888999999999999987766643311 1
Q ss_pred eE-EEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE-E
Q 042434 312 VS-SCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE-R 388 (517)
Q Consensus 312 v~-~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~ 388 (517)
+. +..+. ++..+++++.++. ++.||..+... ..+.... ...++|++..+++++.++.|+.||.++++. .
T Consensus 83 ~~~sp~~~-~~~~v~~g~~dg~--v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 83 VQASPCRS-SDGILYMGKKQDI--WYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp HTTCSCC------CCCCEEEEE--EEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred cccCceEe-cCCEEEEEeCCCE--EEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 10 00111 3456778888887 89999874433 3322221 234566888999999999999999988762 1
Q ss_pred eeccCCCeeEEEEcCCC---CEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEE----EEecCCC
Q 042434 389 VISEEHPITSLSVSVDC---KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFI----ASGSENS 461 (517)
Q Consensus 389 ~~~~~~~i~~~~~s~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l----~~~~~dg 461 (517)
.... .......+.++. ..+++++.+|.+..||..++ .....+.... ..+....++++|... +.+ ++
T Consensus 155 ~~~~-~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~~~~---pv~~~~~~~~dg~~~v~~~~~~--~~ 227 (369)
T 2hz6_A 155 NATY-FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG-DVLWIQNYAS---PVVAFYVWQREGLRKVMHINVA--VE 227 (369)
T ss_dssp EEEE-EEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC-CEEEEEECSS---CEEEEEECTTSSCEEECCEEEE--HH
T ss_pred eEec-ccccCccccCCccccceEEEECCCCEEEEEECCCC-cEEEEecCCC---ceEEEEEecCCceEeccceeec--cc
Confidence 1111 112223333332 56778889999999999876 4444433211 122233334555422 112 34
Q ss_pred cEEEEecCCCc----eeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 462 QIYIWNRRNSK----PIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 462 ~i~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
.++.+|..+|+ .+..+... +.+.+... .+ ..++.++.||.++.++..
T Consensus 228 ~l~~ld~~tG~~~~~~~W~~~~~-~~~~sp~~--~~-g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 228 TLRYLTFMSGEVGRITKWKYPFP-KETEAKSK--LT-PTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCCC-CHHHHHHH--SE-EEECBEECSSCEECCEEE
T ss_pred ceeeeehhcCCcccceeeeeccC-cccccccc--cc-ceEEEecccCCEEecCcc
Confidence 46667766666 44333211 11111111 12 356777778888777654
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.19 E-value=4.1e-09 Score=108.16 Aligned_cols=261 Identities=12% Similarity=0.118 Sum_probs=161.5
Q ss_pred CCCEEEEeeCCCcEEEEEecCCCeeeEEEEecc--CCCCEEEEEECC---CCCeEEEEe------CCCeEEEEECCCCcE
Q 042434 233 NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRS--HQNPVSFVAWSP---DDTKLLTCG------NAEVLKLWDVETGIC 301 (517)
Q Consensus 233 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~--h~~~v~~l~~s~---~~~~l~s~~------~dg~i~iwd~~~~~~ 301 (517)
.+..|++++.|+.|..+|..+++.. ..+.. +......+..+| ++ .+++++ .+|.|..||..+|+.
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~---W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~ 195 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRA---WSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKE 195 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEE---EEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEe---eeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcE
Confidence 3567888889999999999877543 22221 111111111122 44 444443 378999999999998
Q ss_pred EEEeCCC--C-----------------------------CceEEEEEeCCCCeEEEeeCCCc-----------------e
Q 042434 302 KHTFGDH--G-----------------------------FIVSSCAWFPDSKRLVCGSSDTE-----------------K 333 (517)
Q Consensus 302 ~~~~~~~--~-----------------------------~~v~~i~~~~~~~~l~~~~~d~~-----------------v 333 (517)
+..+... . .....+++.|++..+++++.++. .
T Consensus 196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~ 275 (689)
T 1yiq_A 196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLS 275 (689)
T ss_dssp EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTT
T ss_pred EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 8776421 0 01125788888889998887752 1
Q ss_pred eEEEEeCCCCe-eEeeeCc-C-------CCceEEEEEccCCC---EEEEEeCCCcEEEEECCCceEEeec---c------
Q 042434 334 GIFMCDCDGNE-IKAWRGT-R-------IPKVLDLAVTPDGE---NLISVLSDKDIRILNLGTYAERVIS---E------ 392 (517)
Q Consensus 334 ~i~~~~~~~~~-~~~~~~~-~-------~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~---~------ 392 (517)
.|+-+|..+.. +-.+... + ...........+|+ .++.++.+|.++++|..+++..... .
T Consensus 276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 355 (689)
T 1yiq_A 276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG 355 (689)
T ss_dssp EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence 38888887544 3333321 1 11222223333565 7889999999999999988732100 0
Q ss_pred --------------------------------CCCeeEEEEcCCCCEEEEEeC---------------------------
Q 042434 393 --------------------------------EHPITSLSVSVDCKNFIVNLN--------------------------- 413 (517)
Q Consensus 393 --------------------------------~~~i~~~~~s~~~~~l~~~~~--------------------------- 413 (517)
...-..++++|+...+++...
T Consensus 356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (689)
T 1yiq_A 356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR 435 (689)
T ss_dssp EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence 001123688888888777532
Q ss_pred ------------------CCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE
Q 042434 414 ------------------SQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE 475 (517)
Q Consensus 414 ------------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 475 (517)
+|.|..||+.++ +....+..+..... ..+...+.++++|+.||.++.||.++|+.+.
T Consensus 436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG-~~~W~~~~~~~~~~----g~~~tagglvf~gt~dg~l~a~D~~tG~~lw 510 (689)
T 1yiq_A 436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ-QAAWEVPYVTIFNG----GTLSTAGNLVFEGSADGRVIAYAADTGEKLW 510 (689)
T ss_dssp ECCCCSSHHHHHHHHTTCEEEEEEEETTTT-EEEEEEEESSSCCC----CEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccCcccccCCCCCCCcceeEEEEECCCC-CeEeEccCCCCccC----ccceECCCEEEEECCCCcEEEEECCCCccce
Confidence 367999999887 44444443322111 0113467789999999999999999999998
Q ss_pred EecCCCCC-eeEEEecCCCCcEEEEeeC
Q 042434 476 ILSGHSMT-VNCVSWNPKRPKMLASASD 502 (517)
Q Consensus 476 ~~~~h~~~-v~~v~~~~~~~~~l~s~~~ 502 (517)
.+....+. ..-+.|..+|..++++.+.
T Consensus 511 ~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 511 EQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred eeeCCCCcccCceEEEECCEEEEEEEec
Confidence 88754332 2457777888555555443
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.18 E-value=2e-09 Score=110.22 Aligned_cols=271 Identities=10% Similarity=0.018 Sum_probs=169.3
Q ss_pred CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC-----------CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE
Q 042434 234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN-----------PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK 302 (517)
Q Consensus 234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~-----------~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 302 (517)
+..|++++.++.|.-+|..+++. +-.+..... ....+++ ++..|++++.|+.|..+|..+|+.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~---~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNR---IWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEV 151 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEE---EEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCCcE---EEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEE
Confidence 45666677788899999877633 233322211 0012222 4668888899999999999999998
Q ss_pred EEeCCC-C----CceEE-EEEeCCCCeEEEeeC------CCceeEEEEeCCC-CeeEeeeCcCCC---------------
Q 042434 303 HTFGDH-G----FIVSS-CAWFPDSKRLVCGSS------DTEKGIFMCDCDG-NEIKAWRGTRIP--------------- 354 (517)
Q Consensus 303 ~~~~~~-~----~~v~~-i~~~~~~~~l~~~~~------d~~v~i~~~~~~~-~~~~~~~~~~~~--------------- 354 (517)
..+... . ..+.+ ... .+..+++++. ++. |+.+|..+ +.+-.+......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~--v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~ 227 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGY--ITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAAR 227 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCE--EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCE--EEEEECCCCcEEEEeccCCCCccccccccccccccc
Confidence 877644 1 12211 111 2345555543 566 88888764 444333321110
Q ss_pred ----------------ceEEEEEccCCCEEEEEeCCC-------------------cEEEEECCCceE-Eeec---cC--
Q 042434 355 ----------------KVLDLAVTPDGENLISVLSDK-------------------DIRILNLGTYAE-RVIS---EE-- 393 (517)
Q Consensus 355 ----------------~i~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~-~~~~---~~-- 393 (517)
....++++|++..+++++.++ .|..+|..+++. .... +.
T Consensus 228 ~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w 307 (677)
T 1kb0_A 228 TWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW 307 (677)
T ss_dssp TSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred cccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc
Confidence 113578889999988887664 499999998882 2221 11
Q ss_pred -----CCeeEEEEcCCC---CEEEEEeCCCeEEEEEcCCCCccceEEeCcccC--------ceEE---------------
Q 042434 394 -----HPITSLSVSVDC---KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN--------KYVI--------------- 442 (517)
Q Consensus 394 -----~~i~~~~~s~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--------~~~i--------------- 442 (517)
.....+....+| +.+++++.+|.++++|..++ +.+......... ...+
T Consensus 308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 386 (677)
T 1kb0_A 308 DYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG-KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAV 386 (677)
T ss_dssp CCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECS
T ss_pred ccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC-CEeccccccccCcccccCCCCceeeccccCcCCCccEEC
Confidence 122233334477 67889999999999999887 333332211000 0000
Q ss_pred ---------EeecCCCCCcEEEEecC-------------------------------------------CCcEEEEecCC
Q 042434 443 ---------RSCFGGLDGTFIASGSE-------------------------------------------NSQIYIWNRRN 470 (517)
Q Consensus 443 ---------~~~~~s~~~~~l~~~~~-------------------------------------------dg~i~iwd~~~ 470 (517)
....++|++.++++... .|.|..||+.+
T Consensus 387 P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t 466 (677)
T 1kb0_A 387 PGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA 466 (677)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT
T ss_pred cCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC
Confidence 12334677777776532 27899999999
Q ss_pred CceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 471 SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 471 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
++.+..+. +..++.+..+...+ .+++.++.||.+++||..+++.
T Consensus 467 G~~~W~~~-~~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 467 QKAAWSVE-HVSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp TEEEEEEE-ESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred CcEEeecC-CCCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCce
Confidence 99988876 33445555566666 5788889999999999999875
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.18 E-value=2.4e-11 Score=115.23 Aligned_cols=201 Identities=13% Similarity=0.056 Sum_probs=115.5
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcCCCce
Q 042434 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTRIPKV 356 (517)
Q Consensus 278 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~i 356 (517)
++..+++++.||.|..||..+|+.+..+.. ..+.+..+..++..+++++.|+. ++.||.. ++.+..+.......+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~--l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGS--LYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCC--EEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCE--EEEEECCCCceeeeeeccCcccc
Confidence 577899999999999999999999888765 45555555667878888889999 8888885 444434332211011
Q ss_pred E-EEEEccCCCEEEEEeCCCcEEEEECCCceEE-eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeC
Q 042434 357 L-DLAVTPDGENLISVLSDKDIRILNLGTYAER-VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTG 434 (517)
Q Consensus 357 ~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 434 (517)
. +..+. ++..+++++.++.++.||..+++.. ...... ...++|++..+++++.++.|+.||.+++ .....+..
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~~ 158 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTR-ELRWNATY 158 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSS-SCCCEEEE
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCC-CEEEeEec
Confidence 0 00111 3457788889999999999988732 222221 2345678889999999999999999876 44333332
Q ss_pred cccCceEEEeecCCCCC---cEEEEecCCCcEEEEecCCCceeEEecCCCCCee-EEEecCCC
Q 042434 435 HSQNKYVIRSCFGGLDG---TFIASGSENSQIYIWNRRNSKPIEILSGHSMTVN-CVSWNPKR 493 (517)
Q Consensus 435 ~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~v~~~~~~ 493 (517)
.. .....+..+. ..+++++.||.|+.||..+|+.+..... ..++. ...+++++
T Consensus 159 ~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 159 FD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREG 215 (369)
T ss_dssp EE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSS
T ss_pred cc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCc
Confidence 11 1112223321 4577788899999999999998888763 34443 44566666
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.16 E-value=2.1e-09 Score=100.43 Aligned_cols=283 Identities=12% Similarity=0.069 Sum_probs=172.0
Q ss_pred CcccccCCCcccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE
Q 042434 203 HCCGRDQIPTETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL 282 (517)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 282 (517)
....++ ...+.......+...+.++...++|. |..++.+ +..+|. ++... ..+...........+. +..+
T Consensus 41 ~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~---~~~~~~~~~~~~~~~~--~~~l 110 (330)
T 3hxj_A 41 NLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEK---WRFDTKKAIVSDFTIF--EDIL 110 (330)
T ss_dssp TTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGG---GGSCC-----CCEEEE--TTEE
T ss_pred EEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEE---EEEECCCCcccCceEE--CCEE
Confidence 344444 44555555555556677888877776 4445444 777775 23221 1111111112222222 5567
Q ss_pred EEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEc
Q 042434 283 LTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVT 362 (517)
Q Consensus 283 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 362 (517)
..++.++.+..+|.. ++...........+.++...+++. +..++.++. ++.++..+......... ...+.++...
T Consensus 111 ~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~--l~~~d~~g~~~~~~~~~-~~~~~~~~~d 185 (330)
T 3hxj_A 111 YVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNY--LYAINPDGTEKWRFKTN-DAITSAASIG 185 (330)
T ss_dssp EEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSE--EEEECTTSCEEEEEECS-SCCCSCCEEC
T ss_pred EEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCE--EEEECCCCCEeEEEecC-CCceeeeEEc
Confidence 778889999999988 777766655555566667776666 555666666 89999885554444432 2356677777
Q ss_pred cCCCEEEEEeCCCcEEEEECCCce-E-EeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCce
Q 042434 363 PDGENLISVLSDKDIRILNLGTYA-E-RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKY 440 (517)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~-~-~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 440 (517)
+++...+ ++ +.+..+| .++. . ........+.++...+++. +.+++.++.+..+|..+ .....+......
T Consensus 186 ~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g--~~~~~~~~~~~~-- 256 (330)
T 3hxj_A 186 KDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG--TEKWRFKTGKRI-- 256 (330)
T ss_dssp TTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS--CEEEEEECSSCC--
T ss_pred CCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC--CEeEEeeCCCCc--
Confidence 7777554 44 8899999 5544 2 2223335577888888764 56667788888887533 233333322211
Q ss_pred EEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 441 VIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 441 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
.......+++ .|..++.+|.|+.+|. +++.+..+......+.++...+++ .|..++.+|.+++......
T Consensus 257 -~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g--~l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 257 -ESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENG--TIYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp -CSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTC--CEEEECTTSCEEEEEC---
T ss_pred -cccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCC--EEEEEcCCCeEEEEecccc
Confidence 1112223344 5667788889999996 788777776666678888887887 3667899999998776543
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.16 E-value=2.5e-09 Score=109.73 Aligned_cols=274 Identities=11% Similarity=0.028 Sum_probs=165.2
Q ss_pred CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC----------CE-EEEEECCCCCeEEEEeCCCeEEEEECCCCcEE
Q 042434 234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN----------PV-SFVAWSPDDTKLLTCGNAEVLKLWDVETGICK 302 (517)
Q Consensus 234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~----------~v-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 302 (517)
+..|++++.++.|.-+|..+++.. -.+..+.. .+ ..+.. ++..+++++.|+.|..+|..+|+.+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~---W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLI---WKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRA 144 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEE---EEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcee---EEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEe
Confidence 556777778889999999877532 33322211 00 11122 3568888899999999999999988
Q ss_pred EEeCCC--CCceEEEEEeC--CCCeEEEeeC------CCceeEEEEeCCC-CeeEeeeCcC-------------------
Q 042434 303 HTFGDH--GFIVSSCAWFP--DSKRLVCGSS------DTEKGIFMCDCDG-NEIKAWRGTR------------------- 352 (517)
Q Consensus 303 ~~~~~~--~~~v~~i~~~~--~~~~l~~~~~------d~~v~i~~~~~~~-~~~~~~~~~~------------------- 352 (517)
..+... ......+..+| .+..+++++. ++. ++-+|..+ +.+-.+....
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~--v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGY--VTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCE--EEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred eeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCE--EEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence 776532 11101111111 1334444432 465 88888764 4333332110
Q ss_pred -----------CCceEEEEEccCCCEEEEEeCCCc-------------------EEEEECCCceE-Eeec---cC-----
Q 042434 353 -----------IPKVLDLAVTPDGENLISVLSDKD-------------------IRILNLGTYAE-RVIS---EE----- 393 (517)
Q Consensus 353 -----------~~~i~~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~-~~~~---~~----- 393 (517)
......++++|++..+++++.++. |..+|..+++. .... +.
T Consensus 223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~ 302 (689)
T 1yiq_A 223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYT 302 (689)
T ss_dssp CSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCC
T ss_pred CCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccccccc
Confidence 001125788898899999888764 99999999882 2221 11
Q ss_pred --CCeeEEEEcCCCC---EEEEEeCCCeEEEEEcCCCCccceEEeCcc-------------------------cCc-eE-
Q 042434 394 --HPITSLSVSVDCK---NFIVNLNSQEIHMWDVAGKWEKPFKYTGHS-------------------------QNK-YV- 441 (517)
Q Consensus 394 --~~i~~~~~s~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-------------------------~~~-~~- 441 (517)
.+........+|+ .++.++.+|.++++|..++ +.+....... ... ..
T Consensus 303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~ 381 (689)
T 1yiq_A 303 ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG-ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV 381 (689)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE
T ss_pred CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC-CEeccccccccccccccCccCCCcccchhhccccCCCCeeEe
Confidence 1122222333554 7888999999999999877 3321111000 000 00
Q ss_pred ---------EEeecCCCCCcEEEEecC---------------------------------------------CCcEEEEe
Q 042434 442 ---------IRSCFGGLDGTFIASGSE---------------------------------------------NSQIYIWN 467 (517)
Q Consensus 442 ---------i~~~~~s~~~~~l~~~~~---------------------------------------------dg~i~iwd 467 (517)
...+.++|+..++++... +|.|+.||
T Consensus 382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D 461 (689)
T 1yiq_A 382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWD 461 (689)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred CCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEE
Confidence 001334666666665421 47899999
Q ss_pred cCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434 468 RRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV 517 (517)
Q Consensus 468 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v 517 (517)
+.+|+.+..+..+. ++..-.+...+ .+++.++.||.++.||.++|+++
T Consensus 462 ~~tG~~~W~~~~~~-~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 462 PVKQQAAWEVPYVT-IFNGGTLSTAG-NLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp TTTTEEEEEEEESS-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred CCCCCeEeEccCCC-CccCccceECC-CEEEEECCCCcEEEEECCCCccc
Confidence 99999988887543 33333555556 58889999999999999999853
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.15 E-value=6.5e-09 Score=101.30 Aligned_cols=221 Identities=14% Similarity=0.056 Sum_probs=144.8
Q ss_pred CCCeEEEEeC-CCeEEEEECCCCcEEEEeCC-CCCceEEEEE-e-CCCCeEEEeeCC-------Cc---------eeEEE
Q 042434 278 DDTKLLTCGN-AEVLKLWDVETGICKHTFGD-HGFIVSSCAW-F-PDSKRLVCGSSD-------TE---------KGIFM 337 (517)
Q Consensus 278 ~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~-~~~~v~~i~~-~-~~~~~l~~~~~d-------~~---------v~i~~ 337 (517)
||++++.+.. ++.|.+.|+.+.++.+.+.- ....+..+++ + |+++++++++.. |. -.+..
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 7888877665 55799999999998885532 2355788887 5 999999888521 11 12677
Q ss_pred EeCCCCeeE-eeeCcCCCceEEEEEccCCCEEEEEeCCC--------------------------------------cEE
Q 042434 338 CDCDGNEIK-AWRGTRIPKVLDLAVTPDGENLISVLSDK--------------------------------------DIR 378 (517)
Q Consensus 338 ~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------------------------------~i~ 378 (517)
+|..+..+. ++.... ....++++|+|+++++.+.+. .|.
T Consensus 180 ID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 787765442 222222 345678999999998887543 477
Q ss_pred EEECCC--ce--EEeeccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCc-------cceEEeCcccCceEEEeec
Q 042434 379 ILNLGT--YA--ERVISEEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGKWE-------KPFKYTGHSQNKYVIRSCF 446 (517)
Q Consensus 379 i~d~~~--~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~-------~~~~~~~~~~~~~~i~~~~ 446 (517)
+.|..+ +. ...+.......++.++|||++++++.. ++.|.++|+.+... ...................
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a 337 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA 337 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence 778776 32 234445557788999999999887765 78999999975310 0000111111111133445
Q ss_pred CCCCCcEEEEecCCCcEEEEecCC----------CceeEEecCCCCCe-----eEEEecCCCCcEEEEee
Q 042434 447 GGLDGTFIASGSENSQIYIWNRRN----------SKPIEILSGHSMTV-----NCVSWNPKRPKMLASAS 501 (517)
Q Consensus 447 ~s~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~h~~~v-----~~v~~~~~~~~~l~s~~ 501 (517)
|+++|...++.-.|++|.+||+.+ ...+.++..|..+- .++..+||| ++|+++.
T Consensus 338 F~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG-k~l~~~N 406 (595)
T 1fwx_A 338 FDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN-DWLVCLS 406 (595)
T ss_dssp ECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS-SEEEEEE
T ss_pred ECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC-CEEEEcC
Confidence 589995556677899999999877 55677777664432 234568999 5665554
No 235
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.15 E-value=2.9e-08 Score=93.37 Aligned_cols=224 Identities=13% Similarity=0.067 Sum_probs=143.0
Q ss_pred CCCCEEEE-eeCCCcEEEEEecCC-CeeeEEEEec-------cCCCCEEEEEECCCCCeEEEEeCC------CeEEEEEC
Q 042434 232 NNGEYLAS-SSSDCSAIIWKVLED-SKLTLKHTLR-------SHQNPVSFVAWSPDDTKLLTCGNA------EVLKLWDV 296 (517)
Q Consensus 232 ~~~~~l~t-~~~dg~i~iw~~~~~-~~~~~~~~~~-------~h~~~v~~l~~s~~~~~l~s~~~d------g~i~iwd~ 296 (517)
+++++|+. |..++.|.|+|+.+. .+.+..+++. .....-..+..+|+| .++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77887765 556889999998533 3345555552 111245667888999 66666555 78999999
Q ss_pred CCCcEEEEeCCCC---CceEEEEEeCCCCeEEEee-------------------CCCceeEEEEeCCCCee-EeeeCc-C
Q 042434 297 ETGICKHTFGDHG---FIVSSCAWFPDSKRLVCGS-------------------SDTEKGIFMCDCDGNEI-KAWRGT-R 352 (517)
Q Consensus 297 ~~~~~~~~~~~~~---~~v~~i~~~~~~~~l~~~~-------------------~d~~v~i~~~~~~~~~~-~~~~~~-~ 352 (517)
.+++.+.++.... .--..+.|+|+++.++++. .+.. |.+||..+..+ ..+... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~--V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNR--IHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCE--EEEEETTTTEEEEEEESCTT
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCE--EEEEECCCCcEeeEEecCCC
Confidence 9999999886332 2234588899999888885 2445 88888775443 344432 1
Q ss_pred CCceEEEEE--ccCCCEEEEEe------CCCcEEEEECCCce---EEee--c-----------------cCCCeeEEEEc
Q 042434 353 IPKVLDLAV--TPDGENLISVL------SDKDIRILNLGTYA---ERVI--S-----------------EEHPITSLSVS 402 (517)
Q Consensus 353 ~~~i~~~~~--~~~~~~l~~~~------~dg~i~i~d~~~~~---~~~~--~-----------------~~~~i~~~~~s 402 (517)
......+.| +|+++++++++ .+++|.+|....+. ...+ . .......+.++
T Consensus 250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 123445555 99999888776 45678765544332 1100 0 02457889999
Q ss_pred CCCCEEEEEeC-CCeEEEEEcCCCC--ccceEEeCccc--------Cc---eEEEeecCCCCCcEEEEec
Q 042434 403 VDCKNFIVNLN-SQEIHMWDVAGKW--EKPFKYTGHSQ--------NK---YVIRSCFGGLDGTFIASGS 458 (517)
Q Consensus 403 ~~~~~l~~~~~-d~~i~~~d~~~~~--~~~~~~~~~~~--------~~---~~i~~~~~s~~~~~l~~~~ 458 (517)
+||++|+++.. .+.|.+||+.... ..+..+..... +. ..-+.+.++|||++|+++.
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999988876 6799999985331 22222221100 00 0123444589999999888
No 236
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.13 E-value=4.6e-08 Score=90.91 Aligned_cols=236 Identities=11% Similarity=0.050 Sum_probs=151.0
Q ss_pred CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCC-C-------------------CCceEEEEEeCCCCeEEEee
Q 042434 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGD-H-------------------GFIVSSCAWFPDSKRLVCGS 328 (517)
Q Consensus 269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~-------------------~~~v~~i~~~~~~~~l~~~~ 328 (517)
...+++|++++++++++..++.|..|+..++... .+.. . ...+..+++.+++..|+++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 4567889999988888888999999998766543 2210 0 12478899998333455554
Q ss_pred CCCceeEEEEeCCCCeeEeeeC----cCCCceEEEEEcc-CCCEEEEEeC-----------------CCcEEEEECCCce
Q 042434 329 SDTEKGIFMCDCDGNEIKAWRG----TRIPKVLDLAVTP-DGENLISVLS-----------------DKDIRILNLGTYA 386 (517)
Q Consensus 329 ~d~~v~i~~~~~~~~~~~~~~~----~~~~~i~~~~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~~~ 386 (517)
..+. ++.++..+..+..+.. ........+++.+ +|+..++-.. ++.|..||..++.
T Consensus 99 ~~~~--i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 99 CYYH--LSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp TTTE--EEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred CCCC--EEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 4444 7788877654443322 1123478899999 8986665432 3678999987665
Q ss_pred E-EeeccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCc-cceEEeCcccCceEEEeecCCCCCcEEEEecC----
Q 042434 387 E-RVISEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWE-KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE---- 459 (517)
Q Consensus 387 ~-~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---- 459 (517)
. ...........++++|+++.++++ +..+.|..|++.+... ....+.. ... ...+...++|++.++...
T Consensus 177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g---P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN---PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS---EEEEEECTTSCEEEEEEEETTS
T ss_pred EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC---CCCeEECCCCCEEEEecCcccc
Confidence 2 222223456789999999976665 5578999999875311 1111111 111 233445788887666544
Q ss_pred ------CCcEEEEecCCCceeEEecCCC----CCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 460 ------NSQIYIWNRRNSKPIEILSGHS----MTVNCVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 460 ------dg~i~iwd~~~~~~~~~~~~h~----~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
.+.|..+|. .++.+..+.... ..++++++. ++ .++++....+.|.++++...
T Consensus 253 ~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp STTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEEC---
T ss_pred cccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEecccc
Confidence 467888986 477777765432 456777773 55 67777778889999988643
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.08 E-value=1.3e-07 Score=89.06 Aligned_cols=221 Identities=11% Similarity=0.043 Sum_probs=138.4
Q ss_pred CCCCeEEE-EeCCCeEEEEECCCC----cEEEEeC------C-CCCceEEEEEeCCCCeEEEeeCC------CceeEEEE
Q 042434 277 PDDTKLLT-CGNAEVLKLWDVETG----ICKHTFG------D-HGFIVSSCAWFPDSKRLVCGSSD------TEKGIFMC 338 (517)
Q Consensus 277 ~~~~~l~s-~~~dg~i~iwd~~~~----~~~~~~~------~-~~~~v~~i~~~~~~~~l~~~~~d------~~v~i~~~ 338 (517)
+++++|+. +..++.|.++|+.+. +..+++. . .......+...|+| .++++..+ |. +.++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~--v~vl 169 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGG--ILML 169 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCE--EEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCe--EEEE
Confidence 77777765 555789999999765 5666663 1 12245667889999 66665444 44 9999
Q ss_pred eCCC-CeeEeeeCcCC--CceEEEEEccCCCEEEEEe-------------------CCCcEEEEECCCce-EEeeccC--
Q 042434 339 DCDG-NEIKAWRGTRI--PKVLDLAVTPDGENLISVL-------------------SDKDIRILNLGTYA-ERVISEE-- 393 (517)
Q Consensus 339 ~~~~-~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~-~~~~~~~-- 393 (517)
|..+ +.+..+..... ..-..+.|+|+++.+++.. .+..|.+||+.+++ ...+...
T Consensus 170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 9885 44555653322 2345688899999888875 36899999999876 2223222
Q ss_pred -CCeeEEEE--cCCCCEEEEEeC------CCeEEEEEcCCC-CccceEE--eCcc-------------cCceEEEeecCC
Q 042434 394 -HPITSLSV--SVDCKNFIVNLN------SQEIHMWDVAGK-WEKPFKY--TGHS-------------QNKYVIRSCFGG 448 (517)
Q Consensus 394 -~~i~~~~~--s~~~~~l~~~~~------d~~i~~~d~~~~-~~~~~~~--~~~~-------------~~~~~i~~~~~s 448 (517)
.....+.| +|+++++++++. +++|.+|....+ +.....+ .... ........+.+|
T Consensus 250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 23444545 999999888774 567876655332 1111111 0000 000113344459
Q ss_pred CCCcEEEEecC-CCcEEEEecCC---CceeEEecCCC--------------CCeeEEEecCCCCcEEEEee
Q 042434 449 LDGTFIASGSE-NSQIYIWNRRN---SKPIEILSGHS--------------MTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 449 ~~~~~l~~~~~-dg~i~iwd~~~---~~~~~~~~~h~--------------~~v~~v~~~~~~~~~l~s~~ 501 (517)
+||++|+++.. .+.|.+||+.. .+++..+.... +.-..++++|+|. +|+.+.
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk-~LyVaN 399 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGR-RVYVTN 399 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSS-EEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCC-EEEEEc
Confidence 99999988776 57999999863 35555554210 1358899999995 555544
No 238
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.05 E-value=1.5e-08 Score=95.16 Aligned_cols=223 Identities=14% Similarity=0.090 Sum_probs=140.4
Q ss_pred cccCcEEEEEECCCCCEEEEeeC-----CCcEEEEEecCCCeeeEEEEecc------CCCCEEEEEECCCCCeE-EEEe-
Q 042434 220 EHKNEVWFVQFSNNGEYLASSSS-----DCSAIIWKVLEDSKLTLKHTLRS------HQNPVSFVAWSPDDTKL-LTCG- 286 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~------h~~~v~~l~~s~~~~~l-~s~~- 286 (517)
+|-..+..++++++|+++++-.. ++.|.+||..++. ....+.. +...+..+++++++..+ ++..
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~---~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~ 140 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQ---LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA 140 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTE---EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCe---EEEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence 46678999999999986665443 5789999987653 2233321 23456889999865454 5544
Q ss_pred --CCCeEEEEECCCCcEEEEeCCCCCceE-EEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEcc
Q 042434 287 --NAEVLKLWDVETGICKHTFGDHGFIVS-SCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTP 363 (517)
Q Consensus 287 --~dg~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 363 (517)
.++.|.+||+.+++..+.+..|..... ...+.++|..+.+.+.++. +..|. ..+..++++|
T Consensus 141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~--~~~~~--------------~~~~gia~s~ 204 (343)
T 2qe8_A 141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGT--VIRPH--------------LGVNGIVLDA 204 (343)
T ss_dssp SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSC--EECCC--------------CCEEEEEECT
T ss_pred cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCc--eecee--------------cccceeEecc
Confidence 578999999999988777655422110 1334556666666666766 32221 1467899999
Q ss_pred CCCEEEEEeCCC-cEEEEECCC---ce---------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccce
Q 042434 364 DGENLISVLSDK-DIRILNLGT---YA---------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPF 430 (517)
Q Consensus 364 ~~~~l~~~~~dg-~i~i~d~~~---~~---------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 430 (517)
+++.++++...+ .+..++... .. ............++++++|..+++...++.|.+||..++ ....
T Consensus 205 dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G-~~~~ 283 (343)
T 2qe8_A 205 ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR-AYKL 283 (343)
T ss_dssp TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT-EEEE
T ss_pred CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC-CEEE
Confidence 999888887766 555555321 00 011223345678999999999999889999999998333 2221
Q ss_pred EEeCcccCceEEEeecCCCCCcEEEEecCCCcEE
Q 042434 431 KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIY 464 (517)
Q Consensus 431 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 464 (517)
.... .. ......+++.++|.++++.+..+.+.
T Consensus 284 ~~~~-~~-~~~p~~va~~~~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 284 LVTD-EK-LSWTDSFNFGSDGYLYFDCNQLHHSA 315 (343)
T ss_dssp EEEC-GG-GSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred EEEC-Cc-eecCCeeEECCCCcEEEEeCcccccc
Confidence 2211 11 11234445567777777766544443
No 239
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.01 E-value=1.1e-06 Score=92.49 Aligned_cols=275 Identities=8% Similarity=0.065 Sum_probs=173.6
Q ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 042434 225 VWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHT 304 (517)
Q Consensus 225 v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 304 (517)
|.++...++|.+.+ |+.++-+..|+..++. ..... ...+...|.++...+++.+.+ ++.++-+..||..+++....
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~-~~~~~-~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKT-FEKVI-PILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCC-EEECC-----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCe-EEEec-CCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEe
Confidence 88888888886555 5555458888875442 11110 112356789988887776555 44444588999887765443
Q ss_pred eCC-------CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCc-------CCCceEEEEEccCCCEEEE
Q 042434 305 FGD-------HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGT-------RIPKVLDLAVTPDGENLIS 370 (517)
Q Consensus 305 ~~~-------~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~ 370 (517)
... ....|.++...++|...+ |+.+| ++.++..+.....+... ....|.++...++|. +.+
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G---l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWi 325 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFND---LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWL 325 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTSCEEE-EESSC---EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEE
T ss_pred ecCCCCccccCCCeEEEEEEcCCCCEEE-EeCCh---hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEE
Confidence 221 146799999888887554 44455 88899887666554321 234689999998886 455
Q ss_pred EeCCCcEEEEECCCceEEeec--------cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcc------
Q 042434 371 VLSDKDIRILNLGTYAERVIS--------EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS------ 436 (517)
Q Consensus 371 ~~~dg~i~i~d~~~~~~~~~~--------~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~------ 436 (517)
|+.++-|..|+..+....... ....|.++...++|. +.+|+.++.|..||..+.. ...+....
T Consensus 326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~ 402 (795)
T 4a2l_A 326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQR--FTSYTLQEDESARG 402 (795)
T ss_dssp EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCC--EEEECCC------C
T ss_pred EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCc--EEEEecCCCCcccC
Confidence 677777999987665421111 234688888888776 5567778789999976541 11221100
Q ss_pred cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec----CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 437 QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS----GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 437 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
.....+.+++..++|+.|..|+.++-|..||..+++...... .+...|.++...+++ .+. .|+.+ .+.+|+..
T Consensus 403 l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lw-igt~~-Gl~~~~~~ 479 (795)
T 4a2l_A 403 IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG-NLW-LGTLS-ALVRFNPE 479 (795)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS-CEE-EEESS-CEEEEETT
T ss_pred CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC-CEE-EEecC-ceeEEeCC
Confidence 011234455546778756777777779999988876443322 134679999998888 444 44444 47788876
Q ss_pred CC
Q 042434 513 QS 514 (517)
Q Consensus 513 ~~ 514 (517)
++
T Consensus 480 ~~ 481 (795)
T 4a2l_A 480 QR 481 (795)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.01 E-value=3.6e-09 Score=98.80 Aligned_cols=256 Identities=16% Similarity=0.129 Sum_probs=153.4
Q ss_pred EEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCC
Q 042434 228 VQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGD 307 (517)
Q Consensus 228 ~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 307 (517)
+....+| .|..++.++.|..|| .++.. ......+...+.++...+++. +..++.+ +..+|. +++....+..
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~---~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~ 95 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSV---KWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDT 95 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCE---EESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcE---EEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEEC
Confidence 3444455 466677788899998 55532 222333334456777777765 4444444 888886 6655444432
Q ss_pred CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-
Q 042434 308 HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA- 386 (517)
Q Consensus 308 ~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~- 386 (517)
........... +..+.+++.++. ++.++..+......... ...+.++...+++. +++++.++.|..+|.. +.
T Consensus 96 ~~~~~~~~~~~--~~~l~v~t~~~~--l~~~d~~g~~~~~~~~~-~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~ 168 (330)
T 3hxj_A 96 KKAIVSDFTIF--EDILYVTSMDGH--LYAINTDGTEKWRFKTK-KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTE 168 (330)
T ss_dssp -----CCEEEE--TTEEEEECTTSE--EEEECTTSCEEEEEECS-SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCE
T ss_pred CCCcccCceEE--CCEEEEEecCCE--EEEEcCCCCEEEEEcCC-CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCE
Confidence 22222233333 556777887777 88889885544433332 23455666776776 5667788999999998 44
Q ss_pred E-EeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEE
Q 042434 387 E-RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYI 465 (517)
Q Consensus 387 ~-~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 465 (517)
. ........+.++...+++..++ ++ +.+..+| .++ ........... .+......++|. |..++.++.|..
T Consensus 169 ~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g-~~~~~~~~~~~---~~~~~~~~~~g~-l~v~t~~~gl~~ 239 (330)
T 3hxj_A 169 KWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDG-TEKWNFYAGYW---TVTRPAISEDGT-IYVTSLDGHLYA 239 (330)
T ss_dssp EEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTS-CEEEEECCSSC---CCSCCEECTTSC-EEEEETTTEEEE
T ss_pred eEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCC-cEEEEEccCCc---ceeceEECCCCe-EEEEcCCCeEEE
Confidence 2 2223344566777777776544 44 8899999 443 33333332221 133333355664 555667788888
Q ss_pred EecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 466 WNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 466 wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
+|. +++.+..+......+.++...+++ .|..++.+|.|..++.
T Consensus 240 ~~~-~g~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 240 INP-DGTEKWRFKTGKRIESSPVIGNTD--TIYFGSYDGHLYAINP 282 (330)
T ss_dssp ECT-TSCEEEEEECSSCCCSCCEECTTS--CEEEECTTCEEEEECT
T ss_pred ECC-CCCEeEEeeCCCCccccceEcCCC--eEEEecCCCCEEEECC
Confidence 884 566666666555555666776666 4667888888999986
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.99 E-value=8.5e-08 Score=93.53 Aligned_cols=236 Identities=10% Similarity=0.035 Sum_probs=156.9
Q ss_pred CCCCEEEEeeC-CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEE-C-CCCCeEEEEe------------------CCCe
Q 042434 232 NNGEYLASSSS-DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAW-S-PDDTKLLTCG------------------NAEV 290 (517)
Q Consensus 232 ~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~-s-~~~~~l~s~~------------------~dg~ 290 (517)
+||+++..... ++.|.+.|+.+.+....+ .+. .......+++ + |+++++++++ .++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii-~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAIL-EIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEE-ECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEE-eCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 47888877665 556999999765333222 332 2345888898 5 9999998884 3458
Q ss_pred EEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc---------------e---------------------e
Q 042434 291 LKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE---------------K---------------------G 334 (517)
Q Consensus 291 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~---------------v---------------------~ 334 (517)
+.+.|.++.+...++.-.. ....++++|+|+++++++.+.. + .
T Consensus 177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 9999999998888775333 3567889999999999886641 0 1
Q ss_pred EEEEeCCC---Ce-eEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCCce-------------EEeeccCCCe
Q 042434 335 IFMCDCDG---NE-IKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGTYA-------------ERVISEEHPI 396 (517)
Q Consensus 335 i~~~~~~~---~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~-------------~~~~~~~~~i 396 (517)
|.+.|... .. +..+.... ...++.++|||+++++++ .+.+|.++|+.+.+ ..........
T Consensus 256 V~VID~~~~~~~~~~~~Ipvg~--~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP 333 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPIAN--NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 333 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEEES--SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred EEEEeCcccCCceeEEEEecCC--CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence 34455543 12 22222222 456799999999877665 57899999998652 2344455678
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEEcCCC---------CccceEEeCcccCceEE--EeecCCCCCcEEEEecC---CCc
Q 042434 397 TSLSVSVDCKNFIVNLNSQEIHMWDVAGK---------WEKPFKYTGHSQNKYVI--RSCFGGLDGTFIASGSE---NSQ 462 (517)
Q Consensus 397 ~~~~~s~~~~~l~~~~~d~~i~~~d~~~~---------~~~~~~~~~~~~~~~~i--~~~~~s~~~~~l~~~~~---dg~ 462 (517)
..++|+|+|..+++...++.|..||+... ...+.++..+-+..... .....+|||++|+++.. |+.
T Consensus 334 ~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~ 413 (595)
T 1fwx_A 334 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF 413 (595)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence 89999999944555667999999998651 23444555443321111 12245899999998754 332
Q ss_pred ----------EEEEecCCCc
Q 042434 463 ----------IYIWNRRNSK 472 (517)
Q Consensus 463 ----------i~iwd~~~~~ 472 (517)
-.++|+..++
T Consensus 414 ~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CCCCSSCCEEEEEEECSSSS
T ss_pred ccCCCCCCCcceEEEcCCCc
Confidence 1788986554
No 242
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.98 E-value=1.5e-07 Score=83.22 Aligned_cols=208 Identities=8% Similarity=-0.039 Sum_probs=132.4
Q ss_pred cEEEEeCCCC--CceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEE-EEeCCC
Q 042434 300 ICKHTFGDHG--FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLI-SVLSDK 375 (517)
Q Consensus 300 ~~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg 375 (517)
+.+.++ .|. .....+.|++++..+++.+..+.-.|..+|..+..+ .............+++. +..++ +.-.++
T Consensus 10 ~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred eEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 445555 343 335789999987555555543333499999986544 44332222233445554 44554 444678
Q ss_pred cEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc--CceEEEeecCCCCCc
Q 042434 376 DIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ--NKYVIRSCFGGLDGT 452 (517)
Q Consensus 376 ~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~ 452 (517)
.+.++|..+.+ ...+... ......+++||+.++++..++.|.++|..+. .....+.-... ....+.-+.+. +|.
T Consensus 87 ~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTF-KLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp EEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCC-cEEEEEEECCCCcccccceeEEEE-CCE
Confidence 99999999887 3333222 1223446678888888878899999999876 33444332211 11111222223 676
Q ss_pred EEEEecCCCcEEEEecCCCceeEEecCC-------------CCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 453 FIASGSENSQIYIWNRRNSKPIEILSGH-------------SMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 453 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
..+....++.|.+.|..+++.+..+... ....+.++|+|++..+++++...+.|.+-++..
T Consensus 164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 6666556789999999999998888632 135689999999877888888889888877653
No 243
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.98 E-value=2.8e-06 Score=89.35 Aligned_cols=278 Identities=8% Similarity=0.004 Sum_probs=171.9
Q ss_pred ccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe-----ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE
Q 042434 221 HKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL-----RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD 295 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-----~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 295 (517)
+...|.++...++|.+.+ |+.++-+.+|+..++ .......- .-....|.++...++|.+.+ |+.+ -|.+||
T Consensus 213 ~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~ 288 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTK-EIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYH 288 (795)
T ss_dssp -CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTT-EEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEE
T ss_pred CCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCC-eEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEc
Confidence 356788998888877555 444434888887543 22111100 01135699999998887555 4445 588999
Q ss_pred CCCCcEEEEeCC-------CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC------cCCCceEEEEEc
Q 042434 296 VETGICKHTFGD-------HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG------TRIPKVLDLAVT 362 (517)
Q Consensus 296 ~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~------~~~~~i~~~~~~ 362 (517)
..++........ ....|.++...++|... .|+.++- +..++........+.. .....|.++...
T Consensus 289 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~G--l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 289 EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGG--LNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSC--EEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCC--eEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 887765443211 24679999998888654 4555444 8888876554433321 123468899988
Q ss_pred cCCCEEEEEeCCCcEEEEECCCceEEeec----------cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEE
Q 042434 363 PDGENLISVLSDKDIRILNLGTYAERVIS----------EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKY 432 (517)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 432 (517)
++|. +.+|+.++-|..||..+....... ....|.++...++++.+.+|+.++.+..||..++. ...+
T Consensus 366 ~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~--~~~~ 442 (795)
T 4a2l_A 366 KDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ--VENF 442 (795)
T ss_dssp TTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC--EEEE
T ss_pred CCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc--EEEe
Confidence 8876 455777777999998876522221 23568888888888867778887889999987642 2222
Q ss_pred eCcc--cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC------CCCCeeEEEecCCCCcEEEEeeCCC
Q 042434 433 TGHS--QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG------HSMTVNCVSWNPKRPKMLASASDDH 504 (517)
Q Consensus 433 ~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------h~~~v~~v~~~~~~~~~l~s~~~dg 504 (517)
.... .....+.++...++|.+.+.. .+ -|.+||..+++....... +...|.++...++| .+.+ |+.+
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWi-gt~~- 517 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK-RLWI-GGEE- 517 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC-CEEE-EESS-
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC-CEEE-EeCC-
Confidence 2100 111224444446677755544 44 488999887754332211 23678999999988 4444 4444
Q ss_pred cEEEeCCCC
Q 042434 505 TIRIWGPCQ 513 (517)
Q Consensus 505 ~v~iw~~~~ 513 (517)
-|..|+..+
T Consensus 518 Gl~~~~~~~ 526 (795)
T 4a2l_A 518 GLSVFKQEG 526 (795)
T ss_dssp CEEEEEEET
T ss_pred ceEEEeCCC
Confidence 477777644
No 244
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.96 E-value=5.1e-06 Score=76.31 Aligned_cols=234 Identities=9% Similarity=-0.004 Sum_probs=141.2
Q ss_pred eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEE
Q 042434 258 TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFM 337 (517)
Q Consensus 258 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~ 337 (517)
+....+... .....++|+++++++++-..++.|..||...+ ....+ .....+..+++.++++++++.......+++.
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 344444332 56788999999987777667899999998653 33333 2345688999999999666554433334777
Q ss_pred EeCCCCeeEeeeC-cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEe--------e--ccCCCeeEEEEcCC
Q 042434 338 CDCDGNEIKAWRG-TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERV--------I--SEEHPITSLSVSVD 404 (517)
Q Consensus 338 ~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~--------~--~~~~~i~~~~~s~~ 404 (517)
++..+..+..+.. ........++..+++..+++-..++.|+++|..+.. ... . ........+ +++
T Consensus 100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d 177 (306)
T 2p4o_A 100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF 177 (306)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence 7766544433322 122233455555555444444468899999987643 110 0 111234445 788
Q ss_pred CCEEEEE-eCCCeEEEEEcCCCCc--cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE--EecC
Q 042434 405 CKNFIVN-LNSQEIHMWDVAGKWE--KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE--ILSG 479 (517)
Q Consensus 405 ~~~l~~~-~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~ 479 (517)
++.++++ +..+.|..|++..... ....+.... ....++++++|++.++....+.|.++|.. |+... .+..
T Consensus 178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~----~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~ 252 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT----NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ 252 (306)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESC----CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccC----CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence 8766655 4578999999864211 111111110 11223347889887777778899999975 66532 3443
Q ss_pred CCCCeeEEEec---CCCCcEEEEee
Q 042434 480 HSMTVNCVSWN---PKRPKMLASAS 501 (517)
Q Consensus 480 h~~~v~~v~~~---~~~~~~l~s~~ 501 (517)
.....++++|. |++..++++..
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred ccCCceEEEEecccCCCCEEEEECC
Confidence 34568999998 88745555544
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.91 E-value=6.9e-07 Score=82.89 Aligned_cols=240 Identities=9% Similarity=-0.042 Sum_probs=143.9
Q ss_pred CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEecc-----------------CCCCEEEEEECC-CCCeEEE
Q 042434 223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRS-----------------HQNPVSFVAWSP-DDTKLLT 284 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~-----------------h~~~v~~l~~s~-~~~~l~s 284 (517)
....+++|+++|++++++..++.|..|+..++. ......... ....+..+++.+ +++ |+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCc-eEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 455678899999978888888999999875432 222111000 013578999998 554 555
Q ss_pred EeCCCeEEEEECCCCcEEEEeC---C-CCCceEEEEEeC-CCCeEEEeeCC---------------CceeEEEEeCCCCe
Q 042434 285 CGNAEVLKLWDVETGICKHTFG---D-HGFIVSSCAWFP-DSKRLVCGSSD---------------TEKGIFMCDCDGNE 344 (517)
Q Consensus 285 ~~~dg~i~iwd~~~~~~~~~~~---~-~~~~v~~i~~~~-~~~~l~~~~~d---------------~~v~i~~~~~~~~~ 344 (517)
+...+.+..+|..++....... + .......+++.+ +|+..++.... ..-.++.++..+..
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 5455568888877654322111 1 123467899999 88766664321 12348899987655
Q ss_pred eEeeeCcCCCceEEEEEccCCCEEEEE-eCCCcEEEEECCCc---e-EEeeccCCCeeEEEEcCCCCEEEEEeC------
Q 042434 345 IKAWRGTRIPKVLDLAVTPDGENLISV-LSDKDIRILNLGTY---A-ERVISEEHPITSLSVSVDCKNFIVNLN------ 413 (517)
Q Consensus 345 ~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~---~-~~~~~~~~~i~~~~~s~~~~~l~~~~~------ 413 (517)
....... ......++++++++.++++ +..+.|.+|++... . ........ ...++++++|+.+++...
T Consensus 177 ~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 177 TTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred EEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence 5433221 1245679999999976655 55689999998752 2 11112223 788999999987666544
Q ss_pred ----CCeEEEEEcCCCCccceEEeCcccC-ceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 414 ----SQEIHMWDVAGKWEKPFKYTGHSQN-KYVIRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 414 ----d~~i~~~d~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
.+.|..+|... .....+...... ...+..+.. .++.+.++...++.|.++++.
T Consensus 255 ~~~~~~~v~~~d~~G--~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 255 HGRVDPKGIKFDEFG--NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TSCEEEEEEEECTTS--CEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred cCCCccEEEEECCCC--CEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 46688888653 333333322110 011112221 356666666667788888765
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.90 E-value=4e-06 Score=75.38 Aligned_cols=205 Identities=11% Similarity=0.015 Sum_probs=129.5
Q ss_pred cCcEEEEEECCCCCEEE-EeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EEeCCCeEEEEECCCC
Q 042434 222 KNEVWFVQFSNNGEYLA-SSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVETG 299 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~ 299 (517)
...+..++|++++..|+ +-..++.|..++...... .............+++++++..|+ +-...+.|.+++....
T Consensus 35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC---EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc---EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence 35678999999665555 444578899999864422 122222335689999999765555 4455679999998654
Q ss_pred cEEEEeCCCCCceEEEEEeCCCCeEEEeeCC-CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcE
Q 042434 300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD-TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDI 377 (517)
Q Consensus 300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i 377 (517)
...............++++|++..++.+... ..-+|+.++.++.....+..........+++++++..++.+. ..+.|
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I 191 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRA 191 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEE
Confidence 3332332223567899999976666665543 122388888877554444333334678999999877665554 56789
Q ss_pred EEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEE
Q 042434 378 RILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKY 432 (517)
Q Consensus 378 ~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~ 432 (517)
.++|..... ............++.. +..++++ ...+.|..+|..++ .....+
T Consensus 192 ~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g-~~~~~i 245 (267)
T 1npe_A 192 ECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS-KEMDTF 245 (267)
T ss_dssp EEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT-EEEEEE
T ss_pred EEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCC-CceEEE
Confidence 999998654 2222233344566654 4555554 45689999998765 333333
No 247
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.86 E-value=4.3e-06 Score=76.85 Aligned_cols=203 Identities=10% Similarity=0.071 Sum_probs=125.9
Q ss_pred cccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC-C-
Q 042434 212 TETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-E- 289 (517)
Q Consensus 212 ~~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g- 289 (517)
.+.+..+..+ .....++|+++|+++++-..++.|..|+... .... .+ .....+..+++.++|+++++.... +
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g--~~~~--~~-~~~~~p~gia~~~dG~l~vad~~~~~~ 95 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG--NQQI--HA-TVEGKVSGLAFTSNGDLVATGWNADSI 95 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC--CEEE--EE-ECSSEEEEEEECTTSCEEEEEECTTSC
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC--ceEE--EE-eCCCCceeEEEcCCCcEEEEeccCCcc
Confidence 4455555432 5678999999999777766788898888753 2222 12 123568999999999866655432 2
Q ss_pred eEEEEECCCCcEEEEeCC-CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEee--e--------CcCCCceEE
Q 042434 290 VLKLWDVETGICKHTFGD-HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAW--R--------GTRIPKVLD 358 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~--~--------~~~~~~i~~ 358 (517)
.|..+|..+++....... .......++..+++..+++...++. +|.+|..+.....+ . .........
T Consensus 96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~--i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~png 173 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGA--IWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 173 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTE--EEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred eEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCe--EEEEeCCCCcEeEEEECCccccccccCCCCcCCC
Confidence 477778778875433321 2223345555555544444445666 99999875322111 0 011123445
Q ss_pred EEEccCCCEEEEEe-CCCcEEEEECCC-ce---EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434 359 LAVTPDGENLISVL-SDKDIRILNLGT-YA---ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG 424 (517)
Q Consensus 359 ~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 424 (517)
+ +++++.++++. ..+.|..||+.. +. ............++++++|+.+++....+.|..+|..+
T Consensus 174 i--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G 242 (306)
T 2p4o_A 174 L--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR 242 (306)
T ss_dssp E--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred c--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence 5 78887665554 567899999874 22 11222224567799999998877777788999999753
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.85 E-value=3.7e-07 Score=93.41 Aligned_cols=271 Identities=11% Similarity=0.014 Sum_probs=159.2
Q ss_pred CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCC----------CE-EEEEECCCCCeEEEEeCCCeEEEEECCCCcEE
Q 042434 234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQN----------PV-SFVAWSPDDTKLLTCGNAEVLKLWDVETGICK 302 (517)
Q Consensus 234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~----------~v-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 302 (517)
+..|+.++.++.|.-+|..+++.. -.+..... .+ ..++. ++..+++++.|+.|..+|..+|+.+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~---W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKEL---WRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAI 140 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEE---EEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCChhc---eEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEe
Confidence 456777777888999998777432 33322111 00 11122 3567888889999999999999988
Q ss_pred EEeCCCC----CceEE-EEEeCCCCeEEEeeC------CCceeEEEEeCCC-CeeEeeeCcC---C--------------
Q 042434 303 HTFGDHG----FIVSS-CAWFPDSKRLVCGSS------DTEKGIFMCDCDG-NEIKAWRGTR---I-------------- 353 (517)
Q Consensus 303 ~~~~~~~----~~v~~-i~~~~~~~~l~~~~~------d~~v~i~~~~~~~-~~~~~~~~~~---~-------------- 353 (517)
..+.... ..+.+ ... .+..++++.. +|. ++.+|..+ +.+-.+.... .
T Consensus 141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~--v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 216 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGF--VSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKT 216 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCE--EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCE--EEEEECCCCcEEEEecccCCCCCcccccccccccccc
Confidence 7765321 11111 111 1335555543 355 88888764 4433332110 0
Q ss_pred -------------CceEEEEEccCCCEEEEEeCCC-------------------cEEEEECCCceE-Eeec---cC----
Q 042434 354 -------------PKVLDLAVTPDGENLISVLSDK-------------------DIRILNLGTYAE-RVIS---EE---- 393 (517)
Q Consensus 354 -------------~~i~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~-~~~~---~~---- 393 (517)
.....+++.++...++.++.++ .|..+|..+++. .... +.
T Consensus 217 ~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~ 296 (668)
T 1kv9_A 217 WQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF 296 (668)
T ss_dssp CCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred CCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccc
Confidence 0112468888888888888766 399999999882 2221 11
Q ss_pred ---CCeeEEEEcCCCC---EEEEEeCCCeEEEEEcCCCCccceEEeCccc---------CceEE----------------
Q 042434 394 ---HPITSLSVSVDCK---NFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ---------NKYVI---------------- 442 (517)
Q Consensus 394 ---~~i~~~~~s~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---------~~~~i---------------- 442 (517)
.+.....+..+|+ .+++++.+|.++++|..++ +.+........ ....+
T Consensus 297 ~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p 375 (668)
T 1kv9_A 297 TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG-KLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP 375 (668)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred cCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC-CEeccccccccccccccccccCCccccccccccCCeeEECC
Confidence 2233333334665 6888899999999998877 33311111000 00000
Q ss_pred --------EeecCCCCCcEEEE------------------------------------ecCCCcEEEEecCCCceeEEec
Q 042434 443 --------RSCFGGLDGTFIAS------------------------------------GSENSQIYIWNRRNSKPIEILS 478 (517)
Q Consensus 443 --------~~~~~s~~~~~l~~------------------------------------~~~dg~i~iwd~~~~~~~~~~~ 478 (517)
....++|+...++. ...+|.|+.||..+|+.+....
T Consensus 376 ~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~ 455 (668)
T 1kv9_A 376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP 455 (668)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE
T ss_pred CCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc
Confidence 00223444444433 1234889999999999888776
Q ss_pred CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 479 GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 479 ~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
.+. ......+...+ .+++.++.||.++.||..+++.
T Consensus 456 ~~~-~~~~~~~~t~g-g~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 456 YPT-HWNGGTLSTAG-NLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp ESS-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred CCC-CCcCceeEeCC-CEEEEECCcccchhhhhhcChh
Confidence 432 33333344445 5788889999999999998874
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.81 E-value=3.2e-06 Score=74.71 Aligned_cols=201 Identities=11% Similarity=0.029 Sum_probs=129.7
Q ss_pred ccEEEeccccC--cEEEEEECCCCCEEEEeeC--CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EEeC
Q 042434 213 ETVQILTEHKN--EVWFVQFSNNGEYLASSSS--DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TCGN 287 (517)
Q Consensus 213 ~~~~~l~~h~~--~v~~~~~s~~~~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~ 287 (517)
+.+.++. |.. ....++|+|++.+.++.+. ++.|.++|..+++....+. +..+ .....+++. ++.|+ +.-.
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l~~~-~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-MDDS-YFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-CCTT-CCEEEEEEE--TTEEEEEETT
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-cCCC-cceEEEEEe--CCEEEEEEec
Confidence 4455553 553 4689999998765555443 5799999998775432221 2222 122345554 44554 4456
Q ss_pred CCeEEEEECCCCcEEEEeCCC-CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCcC----CCceEEEEE
Q 042434 288 AEVLKLWDVETGICKHTFGDH-GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTR----IPKVLDLAV 361 (517)
Q Consensus 288 dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~----~~~i~~~~~ 361 (517)
++.+.++|..+++.+.++... .. ...+++|++.++++..++. ++.+|..+.. ...+.... ......+.+
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~--l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDGTSI--LYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECCSSS---CCEEEECSSSEEEECSSSE--EEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEECCCCC---eEEEEECCCEEEEECCCCe--EEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence 789999999999999888533 22 2335668888877665555 9999998744 33333221 123567788
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCce-EEeecc--------------CCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCC
Q 042434 362 TPDGENLISVLSDKDIRILNLGTYA-ERVISE--------------EHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAG 424 (517)
Q Consensus 362 ~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~--------------~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~ 424 (517)
. +|...+....++.|.+.|..+++ ...+.. ......++++|+++.+++++ ..+.+...++..
T Consensus 160 ~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 160 I-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp E-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred E-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 7 67555555568899999999987 222211 13568999999987666555 577888888754
No 250
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.81 E-value=3.2e-05 Score=71.67 Aligned_cols=276 Identities=7% Similarity=-0.001 Sum_probs=153.4
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe-ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL-RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 300 (517)
...+.++.|.+++..+++| .+|.| +...+.+..++....- ......+.++.|.+ +. ++.++.+|.|.. ....|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCC
Confidence 4579999998888777754 56654 3333334444433211 12245688999976 44 444456665443 223344
Q ss_pred EEEEeC---CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcE
Q 042434 301 CKHTFG---DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDI 377 (517)
Q Consensus 301 ~~~~~~---~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 377 (517)
.-.... .+...+..+.+.+++..++++ .++. ++.-.-.+..-..........+..+.+.+++..++++...+..
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~--v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~ 186 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGA--IYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFY 186 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCC--EEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEe-CCcc--EEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEE
Confidence 333222 223457788887777655554 4555 6554444544444443344568899999998877766544434
Q ss_pred EEEEC--CCceEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCc-ccCceEEEeecCCCCCcEE
Q 042434 378 RILNL--GTYAERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGH-SQNKYVIRSCFGGLDGTFI 454 (517)
Q Consensus 378 ~i~d~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l 454 (517)
+-.|- .+.+.........+..+.+.+++..+ +.+.+|.+++.+...+ ..-...... ......+..+.+.+++.++
T Consensus 187 ~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~ 264 (327)
T 2xbg_A 187 STWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNS-ENWGELLSPLRRNSVGFLDLAYRTPNEVW 264 (327)
T ss_dssp EEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEE-EEECCCBCTTSSCCSCEEEEEESSSSCEE
T ss_pred EEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCC-CeeEeccCCcccCCcceEEEEecCCCEEE
Confidence 44443 23333333445678889999988755 4456777776642211 110001100 0011113333345677766
Q ss_pred EEecCCCcEEEEecCCCceeEEec---CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 455 ASGSENSQIYIWNRRNSKPIEILS---GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 455 ~~~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
+++. +|.| .+....|+.-..+. .+...+.++.|.+++ .++.++.+|.|.-++-
T Consensus 265 ~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~--~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 265 LAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD--QGFILGQKGILLRYVT 320 (327)
T ss_dssp EEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT--EEEEECSTTEEEEECC
T ss_pred EEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC--ceEEEcCCceEEEEcC
Confidence 6654 6766 34445555444443 234568899997555 4777788998877764
No 251
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.80 E-value=2.9e-07 Score=94.31 Aligned_cols=271 Identities=10% Similarity=0.015 Sum_probs=150.0
Q ss_pred EEEECC-CCCEEEEeeCCC-----------cEEEEEecCCCeeeEEEEe-ccCCCCEEEEEECCCCCeEEEEeC-CCeEE
Q 042434 227 FVQFSN-NGEYLASSSSDC-----------SAIIWKVLEDSKLTLKHTL-RSHQNPVSFVAWSPDDTKLLTCGN-AEVLK 292 (517)
Q Consensus 227 ~~~~s~-~~~~l~t~~~dg-----------~i~iw~~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~ 292 (517)
++++.| +|+.++.|+.+. .+.+||..++. +.....+ ..+.....++++.+++..+++|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~-w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI-VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC-BCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc-EEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 456667 888888887543 57888887653 2222222 223334456788889999999985 45899
Q ss_pred EEECCCCcEEEEeCCCCC-ceEEEEEeCCCCeEEEee-CCCc---eeEEEEeCCCCeeEeeeCcCCCce----EEEEEcc
Q 042434 293 LWDVETGICKHTFGDHGF-IVSSCAWFPDSKRLVCGS-SDTE---KGIFMCDCDGNEIKAWRGTRIPKV----LDLAVTP 363 (517)
Q Consensus 293 iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~~~~-~d~~---v~i~~~~~~~~~~~~~~~~~~~~i----~~~~~~~ 363 (517)
+||..+++....-..+.. .-.+++..++++.++.|+ .++. -.++.||.....-.........+. ....+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 999988765443222211 223455667999999998 3421 238889987765444311000000 0011223
Q ss_pred CCCEEEEEeCC---------CcEEEEECCCceEEe-ec-c---------CCCeeEEEEc-CCCCEEEEEeCCC-------
Q 042434 364 DGENLISVLSD---------KDIRILNLGTYAERV-IS-E---------EHPITSLSVS-VDCKNFIVNLNSQ------- 415 (517)
Q Consensus 364 ~~~~l~~~~~d---------g~i~i~d~~~~~~~~-~~-~---------~~~i~~~~~s-~~~~~l~~~~~d~------- 415 (517)
++..++.++.+ ..+..||..+..... .. . .....++.+. .+++.+++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 45555555444 356788887665111 11 0 1112334443 3677777777432
Q ss_pred ----eEEEEEcCCCCccceEEe-Cc-ccCceEEEeecCCCCCcEEEEecCC-----------CcEEEEecCCCceeE--E
Q 042434 416 ----EIHMWDVAGKWEKPFKYT-GH-SQNKYVIRSCFGGLDGTFIASGSEN-----------SQIYIWNRRNSKPIE--I 476 (517)
Q Consensus 416 ----~i~~~d~~~~~~~~~~~~-~~-~~~~~~i~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~--~ 476 (517)
.+.+||..+. .- .... .. ..... ...+..-++|++++.|+.+ ..+.+||..+.+-.. .
T Consensus 429 ~~~~~v~~yd~~~~-~W-~~~~~~~mp~~R~-~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 429 TNAHIITLGEPGTS-PN-TVFASNGLYFART-FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp CCEEEEECCSTTSC-CE-EEECTTCCSSCCB-SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred CcceEEEcCCCCCC-Ce-eEEccCCCCCCcc-cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC
Confidence 5777887553 11 1111 01 11111 1111224789999999864 468999988765322 2
Q ss_pred ecCCCCCeeEEEecCCCCcEEEEeeC
Q 042434 477 LSGHSMTVNCVSWNPKRPKMLASASD 502 (517)
Q Consensus 477 ~~~h~~~v~~v~~~~~~~~~l~s~~~ 502 (517)
+...........+.|++ ++++.||.
T Consensus 506 ~~~~R~~hs~a~ll~dg-~v~v~GG~ 530 (656)
T 1k3i_A 506 NSIVRVYHSISLLLPDG-RVFNGGGG 530 (656)
T ss_dssp CSSCCCTTEEEEECTTS-CEEEEECC
T ss_pred CCCccccccHhhcCCCc-EEEecCCC
Confidence 22222233345567888 78888885
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.78 E-value=2.2e-06 Score=74.74 Aligned_cols=193 Identities=9% Similarity=0.113 Sum_probs=121.0
Q ss_pred EEEEeCCCC--CceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEe-CCCc
Q 042434 301 CKHTFGDHG--FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVL-SDKD 376 (517)
Q Consensus 301 ~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~ 376 (517)
.+.++ .|. .-...+.|+ ++.++.+++.+|.-.|..+|..+..+ ....... ......+.+++..++... .++.
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~--~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK--RYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC--ccceeEEEEeCCEEEEEEeeCCE
Confidence 45566 443 334778898 67777777777755599999986544 4443332 233322333455555544 5889
Q ss_pred EEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCccc--CceEEEeecCCCCCcE
Q 042434 377 IRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ--NKYVIRSCFGGLDGTF 453 (517)
Q Consensus 377 i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~ 453 (517)
+.+||..+.+ ...+.... ....++++++.++++..++.|.++|..+. .....+..... ....+.-+.+ .+|+.
T Consensus 109 v~v~D~~t~~~~~ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~~~~~lNELe~-~~G~l 184 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESL-TPVRTITVTAHGEELPELNELEW-VDGEI 184 (262)
T ss_dssp EEEEETTTCCEEEEEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTC-SEEEEEECEETTEECCCEEEEEE-ETTEE
T ss_pred EEEEECccCcEEEEEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCC-eEEEEEEeccCCccccccceeEE-ECCEE
Confidence 9999999887 33333222 33344467888888877889999999876 44444332211 1111111121 26766
Q ss_pred EEEecCCCcEEEEecCCCceeEEecCC------------CCCeeEEEecCCCCcEEEEee
Q 042434 454 IASGSENSQIYIWNRRNSKPIEILSGH------------SMTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 454 l~~~~~dg~i~iwd~~~~~~~~~~~~h------------~~~v~~v~~~~~~~~~l~s~~ 501 (517)
.+..-.+..|.+.|..+|+.+..+... ....+.|||+|++..+++||-
T Consensus 185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 666657889999999999998887632 135689999999856666653
No 253
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=2.2e-06 Score=82.64 Aligned_cols=239 Identities=11% Similarity=0.140 Sum_probs=145.2
Q ss_pred CEEEEEECC-CCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeC-CC--ceeEEEEeCCCCe
Q 042434 269 PVSFVAWSP-DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSS-DT--EKGIFMCDCDGNE 344 (517)
Q Consensus 269 ~v~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-d~--~v~i~~~~~~~~~ 344 (517)
....++++| ++..|+++...+.|+.+|+.++...... ........++|+++++.|+++.. ++ ...++.++..+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457889998 4556666655588999999876654444 35566889999999996666654 22 2235555555432
Q ss_pred e--EeeeCcCCCceEEEEEcc-CCCEEEEEeCCCcEEEEECCCceE-Eeec--cCCCeeEEEEcCCCCEEEE-EeCCCeE
Q 042434 345 I--KAWRGTRIPKVLDLAVTP-DGENLISVLSDKDIRILNLGTYAE-RVIS--EEHPITSLSVSVDCKNFIV-NLNSQEI 417 (517)
Q Consensus 345 ~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~--~~~~i~~~~~s~~~~~l~~-~~~d~~i 417 (517)
. ..+.. ......++++| ++..+++-..++.|..++..+... .... .......++++|+++++++ ....+.|
T Consensus 217 ~~~~~l~~--~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 217 KVITELTK--GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp CSEEEEEE--CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeecc--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 2 22221 23467788999 676666666788999999987653 2222 2235788999999995554 4567889
Q ss_pred EEEEcCCCC-c--cceEEeCcc------cC-------ceEEEeecC--------CCCCcEEEEecCCCcEEEEecCCCce
Q 042434 418 HMWDVAGKW-E--KPFKYTGHS------QN-------KYVIRSCFG--------GLDGTFIASGSENSQIYIWNRRNSKP 473 (517)
Q Consensus 418 ~~~d~~~~~-~--~~~~~~~~~------~~-------~~~i~~~~~--------s~~~~~l~~~~~dg~i~iwd~~~~~~ 473 (517)
..++..... . ....+.+.. .. ......++. .++|.+.++-...+.|+.++ .+|..
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v 373 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRV 373 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcE
Confidence 998875421 1 112222110 00 000001111 23456666666677888888 44643
Q ss_pred eEEecC----C-------------CCCeeEEEecCC-CCcEEEEeeCCCcEEEeCCC
Q 042434 474 IEILSG----H-------------SMTVNCVSWNPK-RPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 474 ~~~~~~----h-------------~~~v~~v~~~~~-~~~~l~s~~~dg~v~iw~~~ 512 (517)
...... . -.....|+++|+ + .++++-...+.|+.++++
T Consensus 374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g-~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERE-CFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTT-EEEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCC-EEEEEECCCCeEEEEccC
Confidence 332211 0 124789999995 5 677777777888887754
No 254
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=3.4e-05 Score=80.92 Aligned_cols=279 Identities=12% Similarity=0.014 Sum_probs=169.5
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEE-------e-----ccCCCCEEEEEECCCCCeEEEEeCCC
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHT-------L-----RSHQNPVSFVAWSPDDTKLLTCGNAE 289 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-------~-----~~h~~~v~~l~~s~~~~~l~s~~~dg 289 (517)
...|.++...++|. |..|+..+-|.+++..+.. +..... . ......|.++...++|. |-.|+.++
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~ 333 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQ-FLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGG 333 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC----------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSS
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCe-eeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCC
Confidence 46799999988886 4445554557888875432 111111 0 11346799999998886 55667677
Q ss_pred eEEEEECCCCcEEEEeC---------CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee---CcCCCceE
Q 042434 290 VLKLWDVETGICKHTFG---------DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR---GTRIPKVL 357 (517)
Q Consensus 290 ~i~iwd~~~~~~~~~~~---------~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~---~~~~~~i~ 357 (517)
-|..++..++....... .....|.++...++|... .|+.++- ++.++..+.....+. ......|.
T Consensus 334 Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~G--l~~~~~~~~~~~~~~~~~~~~~~~v~ 410 (781)
T 3v9f_A 334 GINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGG--INVFENGKRVAIYNKENRELLSNSVL 410 (781)
T ss_dssp CEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSC--EEEEETTEEEEECC-----CCCSBEE
T ss_pred eEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCc--EEEEECCCCeEEEccCCCCCCCcceE
Confidence 78889887665433211 124568899888777644 5554443 888888765444332 12234688
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCceEEeec----cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe
Q 042434 358 DLAVTPDGENLISVLSDKDIRILNLGTYAERVIS----EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT 433 (517)
Q Consensus 358 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~ 433 (517)
++...+++... +|+.++.+..+|..+....... ....|.++...+++. +.+++. +.+..||..+.. . ..+.
T Consensus 411 ~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~-~-~~~~ 485 (781)
T 3v9f_A 411 CSLKDSEGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKK-V-IHHY 485 (781)
T ss_dssp EEEECTTSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSS-C-CEEE
T ss_pred EEEECCCCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCe-E-Eecc
Confidence 88888777654 4677677999998877633332 345788888888775 555555 668899986642 1 1221
Q ss_pred Ccc---cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecC---CCCCeeEEEecCCCCcEEEEeeCCCcEE
Q 042434 434 GHS---QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSG---HSMTVNCVSWNPKRPKMLASASDDHTIR 507 (517)
Q Consensus 434 ~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~v~~~~~~~~~l~s~~~dg~v~ 507 (517)
... .....+.++...++|.+.+ |+.++-|..||..+++....... ....|.++...++| .+ ..++.+|.|.
T Consensus 486 ~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~l-Wi~T~~Glv~ 562 (781)
T 3v9f_A 486 DTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKG-QM-WLATGEGLVC 562 (781)
T ss_dssp CTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTS-CE-EEEETTEEEE
T ss_pred cCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCC-CE-EEEECCCceE
Confidence 111 0112244555567776554 45444488899876654332211 24578999998888 44 4445567658
Q ss_pred EeCCCCC
Q 042434 508 IWGPCQS 514 (517)
Q Consensus 508 iw~~~~~ 514 (517)
.|+..++
T Consensus 563 ~~d~~~~ 569 (781)
T 3v9f_A 563 FPSARNF 569 (781)
T ss_dssp ESCTTTC
T ss_pred EECCCCC
Confidence 8887664
No 255
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.77 E-value=3.9e-05 Score=71.74 Aligned_cols=243 Identities=9% Similarity=0.013 Sum_probs=147.7
Q ss_pred CcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE-eCCCeEEEEECCCCcE
Q 042434 223 NEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC-GNAEVLKLWDVETGIC 301 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~ 301 (517)
+..+|.+..+++ +|+.+. ...|+..++.... . ..... ....+..++|++.+..|+.+ ...+.|..+++..+..
T Consensus 34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~-~--~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSE-Y--TLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCC-E--EEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCcccccccCc-eeEeec-ccceEEEeCCCCe-e--EEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence 334566666644 444433 3457777765332 2 22222 33458899999766555544 4578899999877654
Q ss_pred EEEeCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CC-CcEE
Q 042434 302 KHTFGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SD-KDIR 378 (517)
Q Consensus 302 ~~~~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i~ 378 (517)
...+.........+++.+.+..|+.+. ..+. |...+.++.....+..........++++|.+..++... .. +.|.
T Consensus 108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~--I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSR--IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTE--EEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred eEEEeCCCCCccEEEEecCCCeEEEEcCCCCe--EEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence 444433334567889988665555444 4455 88888887665554444445678999999766655544 34 7899
Q ss_pred EEECCCceEEee--ccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEE
Q 042434 379 ILNLGTYAERVI--SEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIA 455 (517)
Q Consensus 379 i~d~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 455 (517)
.+++........ ........++++|++..|+.+ +..+.|..+|+.+... .............+.. .++...+
T Consensus 186 r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~~~~P~giav----~~~~ly~ 260 (349)
T 3v64_C 186 ASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITV----FEDSLYW 260 (349)
T ss_dssp EEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEE----ETTEEEE
T ss_pred EEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEeCCCCCceEEEE----ECCEEEE
Confidence 998876542222 234457899999876666555 4567899999876422 2222211122222322 2456666
Q ss_pred EecCCCcEEEEecCCCceeEEec
Q 042434 456 SGSENSQIYIWNRRNSKPIEILS 478 (517)
Q Consensus 456 ~~~~dg~i~iwd~~~~~~~~~~~ 478 (517)
+-...+.|..++..+|+.+..+.
T Consensus 261 td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 261 TDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EETTTTEEEEEETTTCCSCEEEE
T ss_pred ecCCCCeEEEEEccCCCccEEec
Confidence 66677888888876776655554
No 256
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=5.2e-05 Score=79.49 Aligned_cols=278 Identities=9% Similarity=0.042 Sum_probs=166.4
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe-----ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL-----RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV 296 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-----~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 296 (517)
...|.++...++|.+.+. +.+ -+.+||..++. +...... ......|.++...++|. |..|+..+-|.++|.
T Consensus 210 ~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~-~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~ 285 (781)
T 3v9f_A 210 GNDVRCIYKDTNGNIWIG-TSK-GLALFNANTET-FTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDL 285 (781)
T ss_dssp CSSEEEEEECTTCCEEEE-ETT-EEEEEETTTTE-EEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEET
T ss_pred CCceeEEEEcCCCCEEEE-eCC-cHheECCCCCc-EEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECC
Confidence 357999999888875554 444 58888875432 2111110 11246799999988876 444556456888998
Q ss_pred CCCcEEEEeC--------------CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC---------cCC
Q 042434 297 ETGICKHTFG--------------DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG---------TRI 353 (517)
Q Consensus 297 ~~~~~~~~~~--------------~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---------~~~ 353 (517)
.++....... .....|.++...++|. +-.|+.++- +..++........+.. ...
T Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G--l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 362 (781)
T 3v9f_A 286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG--INFISNAPPTFHTWSYSPTQMNESSLSN 362 (781)
T ss_dssp TCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC--EEEECSSCCSCEEEC----CCCSSCCSS
T ss_pred CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe--EEEeCCCCCcceeeccCccccccCCCCC
Confidence 7765432111 1245789998888776 445554444 8888877655444321 123
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEee-----ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 042434 354 PKVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVI-----SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEK 428 (517)
Q Consensus 354 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~ 428 (517)
..|.++...++|.. .+|+.++-|..||..+...... .....|.++...+++. +.+|+.++.+..+|..++ .
T Consensus 363 ~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~-~- 438 (781)
T 3v9f_A 363 KVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLK-K- 438 (781)
T ss_dssp SCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSC-E-
T ss_pred cceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCC-c-
Confidence 46888988887764 4566666799999876553221 1235688888887775 555777777889987654 1
Q ss_pred ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCC-----CCCeeEEEecCCCCcEEEEeeCC
Q 042434 429 PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGH-----SMTVNCVSWNPKRPKMLASASDD 503 (517)
Q Consensus 429 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~v~~~~~~~~~l~s~~~d 503 (517)
...+.........+.++...++|.+.+ |+. +-|..||..+++........ ...|.++...++| . |..|+.+
T Consensus 439 ~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~-lWigt~~ 514 (781)
T 3v9f_A 439 FQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG-R-FWIGTFG 514 (781)
T ss_dssp EEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC-C-EEEEESS
T ss_pred EEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC-C-EEEEEcC
Confidence 122211011112244554466676444 444 45899998877654332222 4679999999888 4 4445554
Q ss_pred CcEEEeCCCCC
Q 042434 504 HTIRIWGPCQS 514 (517)
Q Consensus 504 g~v~iw~~~~~ 514 (517)
+-+..|+..++
T Consensus 515 ~Gl~~~~~~~~ 525 (781)
T 3v9f_A 515 GGVGIYTPDMQ 525 (781)
T ss_dssp SCEEEECTTCC
T ss_pred CCEEEEeCCCC
Confidence 44777877653
No 257
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.72 E-value=5.3e-06 Score=86.26 Aligned_cols=241 Identities=10% Similarity=0.063 Sum_probs=134.8
Q ss_pred CEEEEEEC-CCCCeEEEEeC-CC----eEEEEECCCC-cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCc---eeEEEE
Q 042434 269 PVSFVAWS-PDDTKLLTCGN-AE----VLKLWDVETG-ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTE---KGIFMC 338 (517)
Q Consensus 269 ~v~~l~~s-~~~~~l~s~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~ 338 (517)
.+...+|| |||++||.+.. +| +|+++|+.++ +.+.. ........++|+|||+.|+....+.. -.|+.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 67889999 99998885533 33 5999999998 63210 00112346889999998888776532 358899
Q ss_pred eCCCCe---eEeeeCcCCCceEEEEEccCCCEEEEEeC---CCcEEEEECCCce--E--Eeec--cCCCeeEEEEcCCCC
Q 042434 339 DCDGNE---IKAWRGTRIPKVLDLAVTPDGENLISVLS---DKDIRILNLGTYA--E--RVIS--EEHPITSLSVSVDCK 406 (517)
Q Consensus 339 ~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~--~--~~~~--~~~~i~~~~~s~~~~ 406 (517)
+..+.. ...+..........+.|+|||++|+..+. ...|+++|+.+.. . .... ......++.|+. |+
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~ 331 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TS 331 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TT
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CC
Confidence 887643 22333222235678899999998887653 3468889987652 2 2222 223344444443 55
Q ss_pred EEEEEeC-C----CeEEEEEcCCCCccceE-EeCcccCceEEEeecCCCCCcEEEEecCCCc--EEEEec-------CCC
Q 042434 407 NFIVNLN-S----QEIHMWDVAGKWEKPFK-YTGHSQNKYVIRSCFGGLDGTFIASGSENSQ--IYIWNR-------RNS 471 (517)
Q Consensus 407 ~l~~~~~-d----~~i~~~d~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~--i~iwd~-------~~~ 471 (517)
.|+..+. + ..|..+|+.+. ..... +..+.... .+....+. .+.++++...+|. |+++|+ .++
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~-~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g 408 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDV-FMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG 408 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSE-EEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCc-EEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence 5554443 3 25777776542 11122 22222221 22222222 3456667777775 556665 344
Q ss_pred ceeEEecCC-CCCeeEEEe----cCCCCcEEEEeeCC---CcEEEeCCCCCC
Q 042434 472 KPIEILSGH-SMTVNCVSW----NPKRPKMLASASDD---HTIRIWGPCQSS 515 (517)
Q Consensus 472 ~~~~~~~~h-~~~v~~v~~----~~~~~~~l~s~~~d---g~v~iw~~~~~~ 515 (517)
+....+... ...+..+.+ ++++..++++.+.. +.+..+++.+++
T Consensus 409 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 409 TGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp TCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred ccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 413444311 122445544 34664566665543 457777776553
No 258
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.71 E-value=3.8e-05 Score=72.89 Aligned_cols=251 Identities=9% Similarity=-0.022 Sum_probs=151.6
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EEeCCCeEEEEECCCCcEEEE
Q 042434 226 WFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVETGICKHT 304 (517)
Q Consensus 226 ~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~ 304 (517)
.|.+..+.+ +|+.+. ...|+..++..... . .... ....+..++|++.+..|+ +-...+.|..+++..+.....
T Consensus 80 ~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~-~--~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~ 153 (386)
T 3v65_B 80 SCKALGPEP-VLLFAN-RIDIRQVLPHRSEY-T--LLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 153 (386)
T ss_dssp CEEECSSCC-EEEEEC-BSCEEEECTTSCCC-E--EEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE
T ss_pred eECCccccc-eeEeec-CccceeeccCCCcE-E--EEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE
Confidence 355555543 444443 35677777754322 1 2222 345588999997665555 445677999999877665444
Q ss_pred eCCCCCceEEEEEeCCCCeEEEee-CCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-C-CcEEEEE
Q 042434 305 FGDHGFIVSSCAWFPDSKRLVCGS-SDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-D-KDIRILN 381 (517)
Q Consensus 305 ~~~~~~~v~~i~~~~~~~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d 381 (517)
+.........+++.+.+..|+.+. ..+. |+..+..+.....+..........+++.|.+..++.... . +.|..++
T Consensus 154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~--I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 154 VSTGLESPGGLAVDWVHDKLYWTDSGTSR--IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp ECSSCSCCCCEEEETTTTEEEEEETTTTE--EEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EeCCCCCccEEEEEeCCCeEEEEcCCCCe--EEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 433334557788887666555544 3444 888888876555544444456889999997776665543 3 6899998
Q ss_pred CCCceE-Eee-ccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec
Q 042434 382 LGTYAE-RVI-SEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS 458 (517)
Q Consensus 382 ~~~~~~-~~~-~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 458 (517)
+..... ... ........++++|++..|+.+ +..+.|..+|+.+... .............+.. ..+.++++-.
T Consensus 232 ~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav----~~~~ly~td~ 306 (386)
T 3v65_B 232 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITV----FEDSLYWTDW 306 (386)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEEEE----ETTEEEEEET
T ss_pred CCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEEEE----ECCEEEEeeC
Confidence 876542 222 234457899999876666555 4567899999875422 2222211112222222 2456666666
Q ss_pred CCCcEEEEecCCCceeEEecCCCCCeeEEEe
Q 042434 459 ENSQIYIWNRRNSKPIEILSGHSMTVNCVSW 489 (517)
Q Consensus 459 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 489 (517)
..+.|..+|..+|+.+..+........+|++
T Consensus 307 ~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 307 HTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp TTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 7788999987777766666543333344443
No 259
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.70 E-value=4.7e-06 Score=85.25 Aligned_cols=259 Identities=13% Similarity=0.135 Sum_probs=152.7
Q ss_pred CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccC-CCCEEEEEECC--CCCeEEEEeC------CCeEEEEECCCCcEEEE
Q 042434 234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSH-QNPVSFVAWSP--DDTKLLTCGN------AEVLKLWDVETGICKHT 304 (517)
Q Consensus 234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h-~~~v~~l~~s~--~~~~l~s~~~------dg~i~iwd~~~~~~~~~ 304 (517)
+..++.++.|+.|..+|..+++.. ..+... ......+..+| .+..+++++. +|.|..+|..+|+.+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~---W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAI---WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEE---EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEe---eeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 457788888999999999877543 222211 00000011111 1335555543 58999999999999887
Q ss_pred eCCC---CC----------------------------ceEEEEEeCCCCeEEEeeCCCc-----------------eeEE
Q 042434 305 FGDH---GF----------------------------IVSSCAWFPDSKRLVCGSSDTE-----------------KGIF 336 (517)
Q Consensus 305 ~~~~---~~----------------------------~v~~i~~~~~~~~l~~~~~d~~-----------------v~i~ 336 (517)
+... .. ....+++.|+...++.++.++. ..|+
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 7421 00 1124678888888888876652 1378
Q ss_pred EEeCCCCee-EeeeCc-CC-------CceEEEEEccCCC---EEEEEeCCCcEEEEECCCceEEeec-c-----------
Q 042434 337 MCDCDGNEI-KAWRGT-RI-------PKVLDLAVTPDGE---NLISVLSDKDIRILNLGTYAERVIS-E----------- 392 (517)
Q Consensus 337 ~~~~~~~~~-~~~~~~-~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~-~----------- 392 (517)
-+|..+..+ -.+... +. .+.....+..+|+ .++.++.+|.++++|..+++..... .
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 888765443 333322 11 1222233334665 6888999999999999888732100 0
Q ss_pred --CC------------------------CeeEEEEcCCCCEEEEEe----------------------------------
Q 042434 393 --EH------------------------PITSLSVSVDCKNFIVNL---------------------------------- 412 (517)
Q Consensus 393 --~~------------------------~i~~~~~s~~~~~l~~~~---------------------------------- 412 (517)
.. .-..++++|+...+++..
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 00 011267777766665421
Q ss_pred --CCCeEEEEEcCCCCccceEEeCcccC-ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCe-eEEE
Q 042434 413 --NSQEIHMWDVAGKWEKPFKYTGHSQN-KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTV-NCVS 488 (517)
Q Consensus 413 --~d~~i~~~d~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~v~ 488 (517)
.+|.|..||+.++ +........... ...+ ...+.++++++.||.++.||.++|+.+..+....+.. .-+.
T Consensus 434 ~~~~g~l~A~D~~tG-~~~W~~~~~~~~~~~~~-----~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~ 507 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQ-KAAWKVPYPTHWNGGTL-----STAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMT 507 (668)
T ss_dssp GGCEEEEEEEETTTT-EEEEEEEESSSCCCCEE-----EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred CCccceEEEEeCCCC-cEEEEccCCCCCcCcee-----EeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceE
Confidence 2377999999877 444443322211 1111 2357788889999999999999999998887543221 2344
Q ss_pred ecCCCCcEEEEee
Q 042434 489 WNPKRPKMLASAS 501 (517)
Q Consensus 489 ~~~~~~~~l~s~~ 501 (517)
+..+|..+++.++
T Consensus 508 ~~~~G~~yva~~~ 520 (668)
T 1kv9_A 508 FELAGRQYVAIMA 520 (668)
T ss_dssp EEETTEEEEEEEE
T ss_pred EEECCEEEEEEEe
Confidence 4456634555544
No 260
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.69 E-value=0.00016 Score=66.61 Aligned_cols=231 Identities=10% Similarity=-0.008 Sum_probs=139.8
Q ss_pred EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EEeCCCeEEEEECCC----CcEEEEeCCCCC
Q 042434 236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVET----GICKHTFGDHGF 310 (517)
Q Consensus 236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~----~~~~~~~~~~~~ 310 (517)
+|+.+.. ..|+..++...... ..+. ....+..++|++++..|+ +-..++.|..+++.+ ......+...-.
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~---~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYT---SLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCE---EEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEEECC-CeEEEEECCCcceE---ehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence 3444433 46888888654322 2222 345678999998765555 445568999999876 222223322334
Q ss_pred ceEEEEEeCCCCeEEEe-eCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC--CcEEEEECCCceE
Q 042434 311 IVSSCAWFPDSKRLVCG-SSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD--KDIRILNLGTYAE 387 (517)
Q Consensus 311 ~v~~i~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~ 387 (517)
....+++.+.+..|+.+ ...+. |..++..+.....+..........+++.|.+..++.+... +.|..+++.....
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~--I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~ 155 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGT--VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 155 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTE--EEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred CcCEEEEeecCCeEEEEECCCCE--EEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe
Confidence 55788998765555544 44555 7888888766554443333467899999977766655543 6899998865543
Q ss_pred Eee--ccCCCeeEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCccceEEeCc--ccCceEEEeecCCCCCcEEEEecCCCc
Q 042434 388 RVI--SEEHPITSLSVSVDCKNFIVNL-NSQEIHMWDVAGKWEKPFKYTGH--SQNKYVIRSCFGGLDGTFIASGSENSQ 462 (517)
Q Consensus 388 ~~~--~~~~~i~~~~~s~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~ 462 (517)
... ........+++++++..++.+. ..+.|..+|+.+..... ..... ......+.. . .+.++++-...+.
T Consensus 156 ~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~-~~~~~~~~~~P~giav---~-~~~ly~~d~~~~~ 230 (316)
T 1ijq_A 156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT-ILEDEKRLAHPFSLAV---F-EDKVFWTDIINEA 230 (316)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-EEECTTTTSSEEEEEE---E-TTEEEEEETTTTE
T ss_pred EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEE-EeecCCccCCcEEEEE---E-CCEEEEEECCCCe
Confidence 222 2345678999999877666554 56799999997542221 11111 111122222 2 4566666667788
Q ss_pred EEEEecCCCceeEEec
Q 042434 463 IYIWNRRNSKPIEILS 478 (517)
Q Consensus 463 i~iwd~~~~~~~~~~~ 478 (517)
|..++..+|+.+..+.
T Consensus 231 V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 231 IFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTCCCCEEEE
T ss_pred EEEEeCCCCcceEEEe
Confidence 9999987776555543
No 261
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.67 E-value=0.00016 Score=68.93 Aligned_cols=240 Identities=10% Similarity=0.010 Sum_probs=148.1
Q ss_pred EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE-eCCCeEEEEECCCC----cEEEEeCCCCC
Q 042434 236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC-GNAEVLKLWDVETG----ICKHTFGDHGF 310 (517)
Q Consensus 236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~----~~~~~~~~~~~ 310 (517)
+|+.+. ...|+..++...... .+......+..++|++.+..|+.+ ...+.|..+++... .....+.....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~----~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCE----EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred eeEEec-cceeEEEccCCccee----EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 444443 357888887644321 122345678899999866665554 45678999998652 23333433445
Q ss_pred ceEEEEEeCCCCeEEEe-eCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC--CCcEEEEECCCceE
Q 042434 311 IVSSCAWFPDSKRLVCG-SSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS--DKDIRILNLGTYAE 387 (517)
Q Consensus 311 ~v~~i~~~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~ 387 (517)
....+++.+.+..|+.+ ...+. |...+.++.....+..........+++.|.+..++.... .+.|...++.....
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~--I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGT--VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 237 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTE--EEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred CcccEEEEecCCceEEEECCCCe--EEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence 67889998855555554 44555 888898887665555444456889999997776666553 47899999876552
Q ss_pred -Eee-ccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEeCc--ccCceEEEeecCCCCCcEEEEecCCCc
Q 042434 388 -RVI-SEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGH--SQNKYVIRSCFGGLDGTFIASGSENSQ 462 (517)
Q Consensus 388 -~~~-~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~ 462 (517)
... ..-.....+++++++..|+.+ +..+.|..+|+.+.... ...... ......+.. ..+.++++-...+.
T Consensus 238 ~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~l~~P~gl~v----~~~~lywtd~~~~~ 312 (400)
T 3p5b_L 238 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAV----FEDKVFWTDIINEA 312 (400)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE-EEEECSSTTSSEEEEEE----ETTEEEEEESSSCS
T ss_pred EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE-EEEeCCCCCCCCEEEEE----eCCEEEEecCCCCe
Confidence 222 233578899999877776665 45678999998764222 222211 112222222 24556666667788
Q ss_pred EEEEecCCCceeEEecCCCCCeeEE
Q 042434 463 IYIWNRRNSKPIEILSGHSMTVNCV 487 (517)
Q Consensus 463 i~iwd~~~~~~~~~~~~h~~~v~~v 487 (517)
|..+|..+|+.+..+........++
T Consensus 313 V~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 313 IFSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp EEEEESSSCCCCEEEECSCSCEEEE
T ss_pred EEEEEcCCCCceEEEecCCCCCceE
Confidence 9999988887666665333334444
No 262
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.67 E-value=8.8e-06 Score=81.43 Aligned_cols=274 Identities=11% Similarity=-0.038 Sum_probs=152.2
Q ss_pred CCEEEEeeC-CCcEEEEEe-cCCCeeeEEEEeccCCC-----------CEEEEEECCCCCe----EEEEeCCCeEEEEEC
Q 042434 234 GEYLASSSS-DCSAIIWKV-LEDSKLTLKHTLRSHQN-----------PVSFVAWSPDDTK----LLTCGNAEVLKLWDV 296 (517)
Q Consensus 234 ~~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~~~h~~-----------~v~~l~~s~~~~~----l~s~~~dg~i~iwd~ 296 (517)
+..|++++. ++.|.-+|. .+++.. -.+..... ....++++|.+.. |+.++.|+.+..+|.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~l---W~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa 138 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTIL---WQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNA 138 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEE---EEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEET
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEE---EEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEEC
Confidence 445666666 788888888 666432 22221111 0122445344444 888889999999999
Q ss_pred CCCcEEEEeCCCC----CceEE-EEEeCCCCeEEEeeC------CCceeEEEEeCCC-CeeEeeeCcCCC----------
Q 042434 297 ETGICKHTFGDHG----FIVSS-CAWFPDSKRLVCGSS------DTEKGIFMCDCDG-NEIKAWRGTRIP---------- 354 (517)
Q Consensus 297 ~~~~~~~~~~~~~----~~v~~-i~~~~~~~~l~~~~~------d~~v~i~~~~~~~-~~~~~~~~~~~~---------- 354 (517)
.+|+.+....... ..+.+ .... ++ .+++++. ++. |+-+|..+ +.+-.+......
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~--v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~ 214 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGY--LTAYDVKTGEQVWRAYATGPDKDLLLASDFN 214 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCE--EEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred CCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCe--EEEEECCCCcEEEEEcCCCCccccccccccc
Confidence 9999887654322 01211 1111 33 5555542 566 88888764 333333221100
Q ss_pred ---------------------------ceEEEEEccCCCEEEEEeCC----------------CcEEEEECCCceE-Eee
Q 042434 355 ---------------------------KVLDLAVTPDGENLISVLSD----------------KDIRILNLGTYAE-RVI 390 (517)
Q Consensus 355 ---------------------------~i~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~-~~~ 390 (517)
.-..+++.++...++.++.+ +.|..+|..+++. ...
T Consensus 215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~ 294 (599)
T 1w6s_A 215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY 294 (599)
T ss_dssp TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE
T ss_pred cccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEe
Confidence 00134566777788877765 3799999998882 222
Q ss_pred ccC-C---------CeeEEEEc-CCC---CEEEEEeCCCeEEEEEcCCCCccceEEeCcc----------cCceEE----
Q 042434 391 SEE-H---------PITSLSVS-VDC---KNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS----------QNKYVI---- 442 (517)
Q Consensus 391 ~~~-~---------~i~~~~~s-~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----------~~~~~i---- 442 (517)
... + ...-+... .+| ..++.++.+|.++++|..++ +.+....... .....+
T Consensus 295 q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~ 373 (599)
T 1w6s_A 295 QKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG-ALVSANKLDDTVNVFKSVDLKTGQPVRDPE 373 (599)
T ss_dssp ESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC-CEEEEEESSTTCCSEEEECTTTCCEEECGG
T ss_pred ecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCC-CEeecccccCCcccccccccCCCceeeccc
Confidence 111 1 11112222 467 45777889999999998876 3333222110 000000
Q ss_pred ----------------------EeecCCCCCcEEEEe---------------------------------c------CCC
Q 042434 443 ----------------------RSCFGGLDGTFIASG---------------------------------S------ENS 461 (517)
Q Consensus 443 ----------------------~~~~~s~~~~~l~~~---------------------------------~------~dg 461 (517)
....++|+..++++. + .+|
T Consensus 374 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G 453 (599)
T 1w6s_A 374 YGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLG 453 (599)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCE
T ss_pred cCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcC
Confidence 011223333333221 1 357
Q ss_pred cEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434 462 QIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV 517 (517)
Q Consensus 462 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v 517 (517)
.|..||+.+|+.+-.... ..++.+-.....+ .+++.++.||.++.||.++|+++
T Consensus 454 ~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tag-g~vf~gt~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 454 QIKAYNAITGDYKWEKME-RFAVWGGTMATAG-DLVFYGTLDGYLKARDSDTGDLL 507 (599)
T ss_dssp EEEEECTTTCCEEEEEEE-SSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred eEEEEECCCCCEEeEecC-CCCccCcceEecC-CEEEEECCCCeEEEEECCCCCEE
Confidence 899999999998877652 1222211112234 46777999999999999998853
No 263
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.66 E-value=1.4e-05 Score=79.96 Aligned_cols=264 Identities=13% Similarity=0.082 Sum_probs=149.4
Q ss_pred EEECCCCCE----EEEeeCCCcEEEEEecCCCeeeEEEEeccCC--CCEEE-EEECCCCCeEEEEe------CCCeEEEE
Q 042434 228 VQFSNNGEY----LASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ--NPVSF-VAWSPDDTKLLTCG------NAEVLKLW 294 (517)
Q Consensus 228 ~~~s~~~~~----l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~--~~v~~-l~~s~~~~~l~s~~------~dg~i~iw 294 (517)
++++|.+.. |+.++.|+.+..+|..+++..- ......+. ..+.+ ... .++ .+++++ .+|.|..+
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W-~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~ 187 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVW-KVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAY 187 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEE-EEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEE-eecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEE
Confidence 344444444 7788889999999988775431 11221110 01111 011 134 455554 38999999
Q ss_pred ECCCCcEEEEeCCCCCc-------------------------------------e-EEEEEeCCCCeEEEeeCCCc----
Q 042434 295 DVETGICKHTFGDHGFI-------------------------------------V-SSCAWFPDSKRLVCGSSDTE---- 332 (517)
Q Consensus 295 d~~~~~~~~~~~~~~~~-------------------------------------v-~~i~~~~~~~~l~~~~~d~~---- 332 (517)
|..+|+.+..+...... + ..+++.++...++.++.++.
T Consensus 188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 99999988776432111 0 13456677777777766531
Q ss_pred ----------eeEEEEeCCCCeeE-eeeCcCC---------CceEEEEEc-cCC---CEEEEEeCCCcEEEEECCCceEE
Q 042434 333 ----------KGIFMCDCDGNEIK-AWRGTRI---------PKVLDLAVT-PDG---ENLISVLSDKDIRILNLGTYAER 388 (517)
Q Consensus 333 ----------v~i~~~~~~~~~~~-~~~~~~~---------~~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~ 388 (517)
-.++-+|..+..+. .+...+. .++. +... .+| ..++.++.+|.++++|..+++..
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 13888888754442 3322211 1111 2222 467 46777889999999999888722
Q ss_pred e-ecc--------------CCC--------------------------eeEEEEcCCCCEEEEEe---------------
Q 042434 389 V-ISE--------------EHP--------------------------ITSLSVSVDCKNFIVNL--------------- 412 (517)
Q Consensus 389 ~-~~~--------------~~~--------------------------i~~~~~s~~~~~l~~~~--------------- 412 (517)
. ... ..+ -..++++|+...+++..
T Consensus 347 w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~ 426 (599)
T 1w6s_A 347 SANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYK 426 (599)
T ss_dssp EEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred ecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccccc
Confidence 1 110 001 12456777666655432
Q ss_pred ------------------------CCCeEEEEEcCCCCccceEEe-CcccCceEEEeecCCCCCcEEEEecCCCcEEEEe
Q 042434 413 ------------------------NSQEIHMWDVAGKWEKPFKYT-GHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWN 467 (517)
Q Consensus 413 ------------------------~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 467 (517)
..|.+..||+.++ +...... +.......+ ...+..++.++.||.++.||
T Consensus 427 ~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG-~~~W~~~~~~~~~~g~~-----~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 427 AGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITG-DYKWEKMERFAVWGGTM-----ATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp TTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTC-CEEEEEEESSCCCSBCE-----EETTTEEEEECTTSEEEEEE
T ss_pred CCcceecccceeccCCcCCcccCCCcCeEEEEECCCC-CEEeEecCCCCccCcce-----EecCCEEEEECCCCeEEEEE
Confidence 2367888888776 3333332 111100001 12466788899999999999
Q ss_pred cCCCceeEEecCCCCCe-eEEEecCCCCcEEEEee
Q 042434 468 RRNSKPIEILSGHSMTV-NCVSWNPKRPKMLASAS 501 (517)
Q Consensus 468 ~~~~~~~~~~~~h~~~v-~~v~~~~~~~~~l~s~~ 501 (517)
.++|+.+..++...+.+ .-+.|..+|..++++.+
T Consensus 501 ~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 501 SDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence 99999998886443222 23556667744554443
No 264
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.65 E-value=4.8e-05 Score=66.76 Aligned_cols=201 Identities=7% Similarity=0.058 Sum_probs=131.3
Q ss_pred EEeccccCcEEEEEECCCCCEEE-EeeCCCcEEEEEecCCCeeeEEEEec-cCCCCEEEEEECCCCCeEEEEeCCCeEEE
Q 042434 216 QILTEHKNEVWFVQFSNNGEYLA-SSSSDCSAIIWKVLEDSKLTLKHTLR-SHQNPVSFVAWSPDDTKLLTCGNAEVLKL 293 (517)
Q Consensus 216 ~~l~~h~~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 293 (517)
+.+.+-.+.+..++|+|++..|+ +...++.|...|.. +. ....+. +.....-.+++.+++.++++.-.++.+.+
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~---v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD---LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYV 95 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC---EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC---EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence 45667777899999999766554 46677778777775 32 223331 22356788999999887777667788999
Q ss_pred EECCCCcE---EEEeC------CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeC--CCCeeEeee------CcCCCce
Q 042434 294 WDVETGIC---KHTFG------DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDC--DGNEIKAWR------GTRIPKV 356 (517)
Q Consensus 294 wd~~~~~~---~~~~~------~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~--~~~~~~~~~------~~~~~~i 356 (517)
+++..... +.... ........++|.|+++.|+++.......++.|+- .+..+.... ......+
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 98765432 22221 2345578999999998888877776666888872 222222221 1122357
Q ss_pred EEEEEccCCC-EEEEEeCCCcEEEEECCCceEEeeccC----------CCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 042434 357 LDLAVTPDGE-NLISVLSDKDIRILNLGTYAERVISEE----------HPITSLSVSVDCKNFIVNLNSQEIHMWD 421 (517)
Q Consensus 357 ~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~d~~i~~~d 421 (517)
.+++++|... +++....++.+.++|............ .....+++.++|+.++ .+..+.++.|.
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~f~ 250 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYRFT 250 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEEEE
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEEEEE
Confidence 8899999755 455555667888899876642222211 3678999999997444 46666666664
No 265
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.65 E-value=4.6e-06 Score=72.74 Aligned_cols=190 Identities=13% Similarity=0.115 Sum_probs=121.0
Q ss_pred ccEEEeccccCc--EEEEEECCCCCEEEEeeCCC--cEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEE-eC
Q 042434 213 ETVQILTEHKNE--VWFVQFSNNGEYLASSSSDC--SAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTC-GN 287 (517)
Q Consensus 213 ~~~~~l~~h~~~--v~~~~~s~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~ 287 (517)
+.+.++ .|... ...+.|+ ++.+..+++.+| .|+++|+.+++.. ..+... .........++++.|... -.
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~---~~~~l~-~~~FgeGit~~g~~ly~ltw~ 105 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTL---QQIELG-KRYFGEGISDWKDKIVGLTWK 105 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEE---EEEECC-TTCCEEEEEEETTEEEEEESS
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEE---EEEecC-CccceeEEEEeCCEEEEEEee
Confidence 445555 35543 4788998 677777777766 8999999877543 333222 233232222345455544 45
Q ss_pred CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCc----CCCceEEEEEc
Q 042434 288 AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGT----RIPKVLDLAVT 362 (517)
Q Consensus 288 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~----~~~~i~~~~~~ 362 (517)
++.+.+||..+.+.+.++...... ..+++|++.|+.+..++. ++.+|..+.. ...+... ....++.+.+.
T Consensus 106 ~~~v~v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~--i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPV--LRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp SSEEEEEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSSE--EEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred CCEEEEEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCCe--EEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 889999999999999988643322 233457777777765555 9999998643 3333321 11234557776
Q ss_pred cCCCEEEEEeCCCcEEEEECCCce-EEeecc-------------CCCeeEEEEcCCCCEEEEEeCC
Q 042434 363 PDGENLISVLSDKDIRILNLGTYA-ERVISE-------------EHPITSLSVSVDCKNFIVNLNS 414 (517)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~d 414 (517)
+|+..+..-.++.|.+.|..+++ ...+.. ....+.++++|+++.|++.+..
T Consensus 181 -~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 181 -DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp -TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred -CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 67655555568899999999987 222211 2356899999998888877653
No 266
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.64 E-value=2.2e-05 Score=78.58 Aligned_cols=260 Identities=11% Similarity=0.070 Sum_probs=147.8
Q ss_pred CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCC--CCEEEEEECC--CCCeEEEEeC------CCeEEEEECCCCcEEE
Q 042434 234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQ--NPVSFVAWSP--DDTKLLTCGN------AEVLKLWDVETGICKH 303 (517)
Q Consensus 234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~--~~v~~l~~s~--~~~~l~s~~~------dg~i~iwd~~~~~~~~ 303 (517)
+..++.++.|+.+..+|..+++..- ......+. ..+. -+| .+..+++++. ++.|..+|..+|+.+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W-~~~~~~~~~~~~~~---~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINW-EVEVCDPKVGSTLT---QAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEE-EEECCCGGGTCBCC---SCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEE-EecCCCCCccceec---cCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 5577788889999999998775431 11222111 0111 111 1335555554 7899999999999887
Q ss_pred EeCCCCCc-------------------------------------e-EEEEEeCCCCeEEEeeCCC-----------c--
Q 042434 304 TFGDHGFI-------------------------------------V-SSCAWFPDSKRLVCGSSDT-----------E-- 332 (517)
Q Consensus 304 ~~~~~~~~-------------------------------------v-~~i~~~~~~~~l~~~~~d~-----------~-- 332 (517)
++...... + ..+++.++...++.++.+. .
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence 76432110 0 1355667666776665321 1
Q ss_pred -eeEEEEeCCCCee-EeeeCcC--------CCceEEEEEccCCC---EEEEEeCCCcEEEEECCCceEE-eeccC-----
Q 042434 333 -KGIFMCDCDGNEI-KAWRGTR--------IPKVLDLAVTPDGE---NLISVLSDKDIRILNLGTYAER-VISEE----- 393 (517)
Q Consensus 333 -v~i~~~~~~~~~~-~~~~~~~--------~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~-~~~~~----- 393 (517)
-.++-+|..+... -.+...+ .....-+....+|+ .++.++.+|.++++|..+++.. .....
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 1378888875443 3332211 01111122334674 5678889999999999888722 11111
Q ss_pred ---------CCe--------------------------eEEEEcCCCCEEEEEe--------------------------
Q 042434 394 ---------HPI--------------------------TSLSVSVDCKNFIVNL-------------------------- 412 (517)
Q Consensus 394 ---------~~i--------------------------~~~~~s~~~~~l~~~~-------------------------- 412 (517)
.++ ..++++|+...+++.+
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 111 2457788877777654
Q ss_pred -----------CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC
Q 042434 413 -----------NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS 481 (517)
Q Consensus 413 -----------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 481 (517)
.++.+..||+.++ +...++...... ........+..++.++.||.|+.||.++|+.+..+....
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG-~~~W~~~~~~~~----~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTG-KAKWTKWEKFAA----WGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTC-CEEEEEEESSCC----CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eccCccccCCCCCCeEEEEECCCC-CEEEEecCCCCc----cceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 2468888998776 333333321110 000111245677779999999999999999998887432
Q ss_pred CC-eeEEEecCCCCcEEEEeeC
Q 042434 482 MT-VNCVSWNPKRPKMLASASD 502 (517)
Q Consensus 482 ~~-v~~v~~~~~~~~~l~s~~~ 502 (517)
.. -..+.+..++..++++.+.
T Consensus 506 ~~~~~p~~~~~~G~~yv~~~~G 527 (571)
T 2ad6_A 506 GGIGSPMTYSFKGKQYIGSMYG 527 (571)
T ss_dssp CCCSCCEEEEETTEEEEEEEEC
T ss_pred CcEeeeEEEEECCEEEEEEECC
Confidence 21 1234455677334444433
No 267
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.64 E-value=4.8e-06 Score=83.39 Aligned_cols=271 Identities=11% Similarity=-0.046 Sum_probs=152.9
Q ss_pred CCEEEEeeC-CCcEEEEEe-cCCCeeeEEEEeccCCC----------CE-EEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434 234 GEYLASSSS-DCSAIIWKV-LEDSKLTLKHTLRSHQN----------PV-SFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300 (517)
Q Consensus 234 ~~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~~~h~~----------~v-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 300 (517)
+..++.++. ++.|.-+|. .+++.. -.+..... .+ ..++. ++..+++++.|+.+..+|..+|+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~---W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~ 136 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIV---WQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGK 136 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEE---EEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEE---EEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 345555666 788888888 666432 22211110 00 11122 35678888899999999999999
Q ss_pred EEEEeCCCC----CceEE-EEEeCCCCeEEEeeC------CCceeEEEEeCCC-CeeEeeeCcCCC--------------
Q 042434 301 CKHTFGDHG----FIVSS-CAWFPDSKRLVCGSS------DTEKGIFMCDCDG-NEIKAWRGTRIP-------------- 354 (517)
Q Consensus 301 ~~~~~~~~~----~~v~~-i~~~~~~~~l~~~~~------d~~v~i~~~~~~~-~~~~~~~~~~~~-------------- 354 (517)
.+..+.... ..+.+ .... + ..+++++. ++. ++.+|..+ +.+-.+......
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~--v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~ 212 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGA--VNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP 212 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCE--EEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred EEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCE--EEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence 887664321 01211 1111 3 35555554 566 88888864 443333221100
Q ss_pred -----------------------ceEEEEEccCCCEEEEEeCC----------------CcEEEEECCCceE-Eeec---
Q 042434 355 -----------------------KVLDLAVTPDGENLISVLSD----------------KDIRILNLGTYAE-RVIS--- 391 (517)
Q Consensus 355 -----------------------~i~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~-~~~~--- 391 (517)
....+++.++...++.++.+ +.|..+|..+++. ....
T Consensus 213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~ 292 (571)
T 2ad6_A 213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP 292 (571)
T ss_dssp GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCC
Confidence 00235666766677766542 3599999998872 2221
Q ss_pred cC-------CCeeEEEEcCCCC---EEEEEeCCCeEEEEEcCCCCccceEEeCcc-c----------Cc-----------
Q 042434 392 EE-------HPITSLSVSVDCK---NFIVNLNSQEIHMWDVAGKWEKPFKYTGHS-Q----------NK----------- 439 (517)
Q Consensus 392 ~~-------~~i~~~~~s~~~~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~----------~~----------- 439 (517)
+. ....-+...++|+ .+++++.+|.++++|..++ +.+....... . ..
T Consensus 293 ~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~ 371 (571)
T 2ad6_A 293 HDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENG-NLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRM 371 (571)
T ss_dssp TCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTC-CEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCT
T ss_pred CcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCC-CEEeeecccCCccccccccccCCceecccccCCCC
Confidence 11 1111122234674 5677888999999998776 3333322111 0 00
Q ss_pred ---eEE-----------EeecCCCCCcEEEEec-------------------------------------CCCcEEEEec
Q 042434 440 ---YVI-----------RSCFGGLDGTFIASGS-------------------------------------ENSQIYIWNR 468 (517)
Q Consensus 440 ---~~i-----------~~~~~s~~~~~l~~~~-------------------------------------~dg~i~iwd~ 468 (517)
..+ ....++|+..++++.+ .+|.|+.||.
T Consensus 372 ~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~ 451 (571)
T 2ad6_A 372 DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL 451 (571)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT
T ss_pred CCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEEC
Confidence 000 1123355555555542 3578999999
Q ss_pred CCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCC
Q 042434 469 RNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSE 516 (517)
Q Consensus 469 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 516 (517)
.+|+.+.++... ..+.+......+ .+++.++.||.|+.||..++++
T Consensus 452 ~tG~~~W~~~~~-~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 452 TTGKAKWTKWEK-FAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp TTCCEEEEEEES-SCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred CCCCEEEEecCC-CCccceeEEECC-CEEEEEcCCCeEEEEECCCCCE
Confidence 999988877632 233332222234 3677789999999999999875
No 268
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.64 E-value=6.5e-06 Score=85.61 Aligned_cols=195 Identities=11% Similarity=0.113 Sum_probs=115.2
Q ss_pred cccC-cEEEEEEC-CCCCEEEEeeC-CC----cEEEEEecCC-CeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---
Q 042434 220 EHKN-EVWFVQFS-NNGEYLASSSS-DC----SAIIWKVLED-SKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA--- 288 (517)
Q Consensus 220 ~h~~-~v~~~~~s-~~~~~l~t~~~-dg----~i~iw~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--- 288 (517)
+|.- .+...+|| |||++||.+.. +| .|+++|+.++ .... ..+. .....++|+|||+.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~~---~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKVS---GTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCEE---EECSCCEECSSTTEEEEEEECTTC
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--cccc---CceeeEEEecCCCEEEEEEECCCC
Confidence 3443 68889999 99999886543 22 4999999876 4211 0111 113467899999888877665
Q ss_pred --CeEEEEECCCCcE--EEEeC-CCCCceEEEEEeCCCCeEEEeeCC-CceeEEEEeCCCC--ee--EeeeCcCCCceEE
Q 042434 289 --EVLKLWDVETGIC--KHTFG-DHGFIVSSCAWFPDSKRLVCGSSD-TEKGIFMCDCDGN--EI--KAWRGTRIPKVLD 358 (517)
Q Consensus 289 --g~i~iwd~~~~~~--~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d-~~v~i~~~~~~~~--~~--~~~~~~~~~~i~~ 358 (517)
..|.++++.++.. ...+. ........+.|+|||++|+..+.+ ..-.+++++..+. .. ..+.........+
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD 324 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence 2688889887642 23332 223446788999999988776533 3455899998753 23 3333333334445
Q ss_pred EEEccCCCEEE-EEeCC----CcEEEEECCCc-e-EE-eeccCCC--eeEEEEcCCCCEEE-EEeCCCe--EEEEEc
Q 042434 359 LAVTPDGENLI-SVLSD----KDIRILNLGTY-A-ER-VISEEHP--ITSLSVSVDCKNFI-VNLNSQE--IHMWDV 422 (517)
Q Consensus 359 ~~~~~~~~~l~-~~~~d----g~i~i~d~~~~-~-~~-~~~~~~~--i~~~~~s~~~~~l~-~~~~d~~--i~~~d~ 422 (517)
+.|+. |..|+ ....+ ..|..+|+.+. . .. ...+... +..+.+ .++.++ +...++. |.++|+
T Consensus 325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEEC
T ss_pred Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEec
Confidence 55443 55444 44333 26777787652 3 23 3444433 344444 445554 4455664 556665
No 269
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.62 E-value=5.1e-05 Score=65.60 Aligned_cols=194 Identities=8% Similarity=0.040 Sum_probs=120.2
Q ss_pred cEEEEeCCC--CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEE-EEeCCC
Q 042434 300 ICKHTFGDH--GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLI-SVLSDK 375 (517)
Q Consensus 300 ~~~~~~~~~--~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg 375 (517)
+.+.++ .| ......+.|++ +.++.+.+.+|.-.|..+|..+..+ ..........-..+++. +..++ ..-.++
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCC
Confidence 345555 44 34466889986 5666777777655699999986554 43433332122334443 44444 445688
Q ss_pred cEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC--ceEEEeecCCCCCc
Q 042434 376 DIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN--KYVIRSCFGGLDGT 452 (517)
Q Consensus 376 ~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~ 452 (517)
.+.+||..+.+ ...+.....- ..+.++++.++++..++.|.++|..+. .....+.-...+ ...+.-+.+ .+|+
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~~G--wglt~dg~~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g~~~~~lNeLe~-~~G~ 161 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPGEG--WALTSDDSHLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGGRPLDNLNELEW-VNGE 161 (243)
T ss_dssp EEEEEETTTTEEEEEEECSSCC--CEEEECSSCEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEE-ETTE
T ss_pred EEEEEECCcCcEEEEEeCCCCc--eEEeeCCCEEEEECCCCeEEEEeCCCC-eEEEEEEEccCCcccccceeeEE-eCCE
Confidence 99999999987 3333333322 344467777887777899999999876 444443322211 111111111 2677
Q ss_pred EEEEecCCCcEEEEecCCCceeEEecCC-------------CCCeeEEEecCCCCcEEEEee
Q 042434 453 FIASGSENSQIYIWNRRNSKPIEILSGH-------------SMTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 453 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~v~~~~~~~~~l~s~~ 501 (517)
..+..-.+..|.+.|..+|+.+..+... ....++|+|+|++..+++||-
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 6666556789999999999988877521 135689999998866666664
No 270
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.60 E-value=3.5e-05 Score=74.24 Aligned_cols=237 Identities=10% Similarity=0.084 Sum_probs=141.2
Q ss_pred CEEEEEECCC--CCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCC---ceeEEEEeCCCC
Q 042434 269 PVSFVAWSPD--DTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDT---EKGIFMCDCDGN 343 (517)
Q Consensus 269 ~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~---~v~i~~~~~~~~ 343 (517)
....++|+|+ +..|+.+...+.|+.+|..++...... ........++++++|+ |+.+...+ ...++.++..+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4578999984 445555544489999999887765544 4555689999999999 44444321 122444443322
Q ss_pred ee--EeeeCcCCCceEEEEEcc-CCCEEEEEeCCCcEEEEECCCceE--Eeec--cCCCeeEEEEcCCCCEEEEE-eCCC
Q 042434 344 EI--KAWRGTRIPKVLDLAVTP-DGENLISVLSDKDIRILNLGTYAE--RVIS--EEHPITSLSVSVDCKNFIVN-LNSQ 415 (517)
Q Consensus 344 ~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~--~~~~--~~~~i~~~~~s~~~~~l~~~-~~d~ 415 (517)
.. .... .......++++| ++...++-..++.|+.+|..++.. .... .......++++|++++|+++ ...+
T Consensus 218 ~~~~~~~~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 218 FTERLSLC--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TCCEEEEE--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred eecccccc--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 11 1111 122456788999 666666666778899999875542 1211 12223469999999955554 5578
Q ss_pred eEEEEEcCCCCc---cceEEeCccc------------CceEEEeecC---------CCCCcEEEEecCCCcEEEEecCCC
Q 042434 416 EIHMWDVAGKWE---KPFKYTGHSQ------------NKYVIRSCFG---------GLDGTFIASGSENSQIYIWNRRNS 471 (517)
Q Consensus 416 ~i~~~d~~~~~~---~~~~~~~~~~------------~~~~i~~~~~---------s~~~~~l~~~~~dg~i~iwd~~~~ 471 (517)
.|..++...... ....+.+... .......+++ .++|.+.++-...+.|+.++. +|
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 899988753211 1122222100 0001122333 566777777777788999885 55
Q ss_pred ceeEEecCC------------------CCCeeEEEec-CCCCcEEEEeeCCCcEEEeCCC
Q 042434 472 KPIEILSGH------------------SMTVNCVSWN-PKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 472 ~~~~~~~~h------------------~~~v~~v~~~-~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
... ++.+. -....+|+++ +++ .++++=...+.|+.++++
T Consensus 375 ~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g-~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 RVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK-CFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT-EEEEEEGGGTEEEEEEEC
T ss_pred CEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC-EEEEEeCCCCEEEEEecC
Confidence 433 33221 1236789999 566 677777777888887764
No 271
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.57 E-value=5.5e-05 Score=75.79 Aligned_cols=258 Identities=14% Similarity=0.135 Sum_probs=147.1
Q ss_pred CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccC-------CCCEEEEEEC-CCCC-eEEEEe------CCCeEEEEECCC
Q 042434 234 GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSH-------QNPVSFVAWS-PDDT-KLLTCG------NAEVLKLWDVET 298 (517)
Q Consensus 234 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h-------~~~v~~l~~s-~~~~-~l~s~~------~dg~i~iwd~~~ 298 (517)
+..++.++.|+.+.-+|..+++..-. .....+ ..++ +.=. .+++ .+++++ .+|.|..+|..+
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~-~~~~~~~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t 193 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWK-KKFADHGAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT 193 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEE-EECSCGGGTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEee-ecCCCCCcCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence 45677788899999999987754311 122111 1111 1100 1233 566654 378999999999
Q ss_pred CcEEEEeCCCCCce-----------------------------------------EEEEEeCCCCeEEEeeCC-------
Q 042434 299 GICKHTFGDHGFIV-----------------------------------------SSCAWFPDSKRLVCGSSD------- 330 (517)
Q Consensus 299 ~~~~~~~~~~~~~v-----------------------------------------~~i~~~~~~~~l~~~~~d------- 330 (517)
|+.+.........+ ..+++.|+...++.++.+
T Consensus 194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~ 273 (582)
T 1flg_A 194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW 273 (582)
T ss_dssp CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence 99877653211000 124566677777766631
Q ss_pred -----C----------ceeEEEEeCCCCee-EeeeCc-C--------CCceEEEEEc-cCCC---EEEEEeCCCcEEEEE
Q 042434 331 -----T----------EKGIFMCDCDGNEI-KAWRGT-R--------IPKVLDLAVT-PDGE---NLISVLSDKDIRILN 381 (517)
Q Consensus 331 -----~----------~v~i~~~~~~~~~~-~~~~~~-~--------~~~i~~~~~~-~~~~---~l~~~~~dg~i~i~d 381 (517)
+ .-.|+-+|..+... -.+... + ..++. +... .+|+ .++.++.+|.++++|
T Consensus 274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD 352 (582)
T 1flg_A 274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVD 352 (582)
T ss_dssp GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEE
T ss_pred ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEE
Confidence 1 02388888865443 333221 1 01121 1221 4674 678899999999999
Q ss_pred CCCceEEe-eccCC--------------C--------------------------------eeEEEEcCCCCEEEEEe--
Q 042434 382 LGTYAERV-ISEEH--------------P--------------------------------ITSLSVSVDCKNFIVNL-- 412 (517)
Q Consensus 382 ~~~~~~~~-~~~~~--------------~--------------------------------i~~~~~s~~~~~l~~~~-- 412 (517)
..+++... ..... + -..++++|+...+++..
T Consensus 353 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~ 432 (582)
T 1flg_A 353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH 432 (582)
T ss_dssp TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred CCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence 98877221 11000 0 11346677655555543
Q ss_pred -------------------------------CCCeEEEEEcCCCCccceEEeCcccC-ceEEEeecCCCCCcEEEEecCC
Q 042434 413 -------------------------------NSQEIHMWDVAGKWEKPFKYTGHSQN-KYVIRSCFGGLDGTFIASGSEN 460 (517)
Q Consensus 413 -------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~d 460 (517)
.+|.|..||+.++ +...+....... ...+ ...+.+++.|+.|
T Consensus 433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG-~~~W~~~~~~~~~~g~~-----~tagglvf~g~~d 506 (582)
T 1flg_A 433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG-KVVWEHKEHLPLWAGVL-----ATAGNLVFTGTGD 506 (582)
T ss_dssp EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC-CEEEEEEESSCCCSCCE-----EETTTEEEEECTT
T ss_pred cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC-CEEEEecCCCCCcccce-----EeCCCEEEEECCC
Confidence 2577889998876 443333322111 0011 1246678889999
Q ss_pred CcEEEEecCCCceeEEecCCCCCe-eEEEecCCCCcEEEEee
Q 042434 461 SQIYIWNRRNSKPIEILSGHSMTV-NCVSWNPKRPKMLASAS 501 (517)
Q Consensus 461 g~i~iwd~~~~~~~~~~~~h~~~v-~~v~~~~~~~~~l~s~~ 501 (517)
|.++.||.++|+.+..+....+.. .-+.|..+|..++++.+
T Consensus 507 g~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 507 GYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 999999999999999887543322 23667678844555443
No 272
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.57 E-value=5.8e-05 Score=75.65 Aligned_cols=56 Identities=7% Similarity=0.047 Sum_probs=39.5
Q ss_pred CCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCCCC
Q 042434 460 NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSSEV 517 (517)
Q Consensus 460 dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~~v 517 (517)
+|.|+.||+.+|+.+.....+. ++..-.....+ .+++.++.||.++.||.++|+++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCC-CEEEEECCCCcEEEEECCCCCEE
Confidence 6889999999999887765332 22221111224 47778999999999999998853
No 273
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.55 E-value=4.2e-05 Score=66.67 Aligned_cols=192 Identities=6% Similarity=-0.031 Sum_probs=118.6
Q ss_pred cEEEEeCCCC--CceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCee-EeeeCcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434 300 ICKHTFGDHG--FIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVTPDGENLISVLSDKD 376 (517)
Q Consensus 300 ~~~~~~~~~~--~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 376 (517)
+.+.++ .|. .....+.|+ ++.++.+.+.+|. |..+|..+..+ ... .........+++.. ++..++.-.++.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~--v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGT--LRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTE--EEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCE--EEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCE
Confidence 345555 443 334678887 4566677777788 88888875443 333 22211223344432 234444556889
Q ss_pred EEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccC--ceEEEeecCCCCCcE
Q 042434 377 IRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQN--KYVIRSCFGGLDGTF 453 (517)
Q Consensus 377 i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~ 453 (517)
+.+||..+.+ ...+..... ...++++++.++++..++.|.++|..+. .....+.....+ ...+.-+.+ .+|+.
T Consensus 118 v~V~D~~Tl~~~~ti~~~~e--GwGLt~Dg~~L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~-~dG~l 193 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYSGE--GWGLCYWNGKLVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELEC-ANGVI 193 (268)
T ss_dssp EEEEETTTTEEEEEEECSSC--CCCEEEETTEEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEE-ETTEE
T ss_pred EEEEECCcCcEEEEEeCCCc--eeEEecCCCEEEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEE-eCCEE
Confidence 9999999988 333332222 2334467888888888999999998876 444443332211 111111121 26766
Q ss_pred EEEecCCCcEEEEecCCCceeEEecCC-------------CCCeeEEEecCCCCcEEEEee
Q 042434 454 IASGSENSQIYIWNRRNSKPIEILSGH-------------SMTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 454 l~~~~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~v~~~~~~~~~l~s~~ 501 (517)
.+....+..|.+.|..+|+.+..+... ....+.|||+|++..+++||-
T Consensus 194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 665556789999999999988877531 236789999998867777764
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.54 E-value=0.00024 Score=67.68 Aligned_cols=206 Identities=12% Similarity=-0.036 Sum_probs=130.5
Q ss_pred ccccCcEEEEEECCCCCEEEEe-eCCCcEEEEEecCCCe-eeEEEEeccCCCCEEEEEECCC-CCeEEEEeCCCeEEEEE
Q 042434 219 TEHKNEVWFVQFSNNGEYLASS-SSDCSAIIWKVLEDSK-LTLKHTLRSHQNPVSFVAWSPD-DTKLLTCGNAEVLKLWD 295 (517)
Q Consensus 219 ~~h~~~v~~~~~s~~~~~l~t~-~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd 295 (517)
......+..++|++.+..|..+ ...+.|..+++..... ......+.........+++.+. +++.++-...+.|.+.+
T Consensus 108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~ 187 (400)
T 3p5b_L 108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 187 (400)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEe
Confidence 3345678899999865555444 4567888888754210 0111223334456788999874 44555556678999999
Q ss_pred CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CC
Q 042434 296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SD 374 (517)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d 374 (517)
++.......+...-.....+++.|.+..|+.+.....-+|+..++++.....+..........+++++++..|+.+. ..
T Consensus 188 ~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~ 267 (400)
T 3p5b_L 188 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 267 (400)
T ss_dssp TTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCC
Confidence 87665544444444557899999977777666543222399999988766555444445788999999887777665 46
Q ss_pred CcEEEEECCCce-EEeec---cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 375 KDIRILNLGTYA-ERVIS---EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 375 g~i~i~d~~~~~-~~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
+.|..+|+.... ..... .......+++. .+..+++....+.|..+|..++
T Consensus 268 ~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 268 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp TEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred CEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 789999987655 22222 12345566663 3345555566778888886554
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.54 E-value=0.0002 Score=66.79 Aligned_cols=200 Identities=12% Similarity=0.005 Sum_probs=128.1
Q ss_pred cCcEEEEEECCCCCEEE-EeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCe-EEEEeCCCeEEEEECCCC
Q 042434 222 KNEVWFVQFSNNGEYLA-SSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTK-LLTCGNAEVLKLWDVETG 299 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~~~dg~i~iwd~~~~ 299 (517)
...+..++|++....|. +-...+.|..++....... ............+++.+.+.. .++-...+.|.+.++...
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~---~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 148 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE---EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 148 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCce---EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence 34578999997555554 4445678888887644321 122222344577888875544 455556789999998755
Q ss_pred cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEE
Q 042434 300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIR 378 (517)
Q Consensus 300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~ 378 (517)
.....+...-.....+++.|.+..++.+.....-+|+.++.++.....+..........++++|++..|+.+. ..+.|.
T Consensus 149 ~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~ 228 (349)
T 3v64_C 149 HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIE 228 (349)
T ss_dssp SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEE
Confidence 4443443444567899999977766666554323499999988666555444444678999998777666554 467899
Q ss_pred EEECCCce-EEee-ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 379 ILNLGTYA-ERVI-SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 379 i~d~~~~~-~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
.+|+.... .... ........+++ ..+..+++....+.|..++..++
T Consensus 229 ~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 229 RANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp EEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred EEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence 99987644 2222 23345677777 34555555566778888875443
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.52 E-value=0.00011 Score=64.53 Aligned_cols=204 Identities=14% Similarity=0.102 Sum_probs=129.1
Q ss_pred EeCCCCCceEEEEEeCCCCeEEE-eeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEEC
Q 042434 304 TFGDHGFIVSSCAWFPDSKRLVC-GSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL 382 (517)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~l~~-~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 382 (517)
.+.+-...+..++|+|++..|++ ...++. |+.+|..+..+..+..........+++.+++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~--I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAA--IVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEE--EEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCe--EEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 44555667999999998776665 555555 999999987777765544457889999998887777667788999887
Q ss_pred CCceE----Ee-------eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC--CccceEEeC----cccCceEEEee
Q 042434 383 GTYAE----RV-------ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK--WEKPFKYTG----HSQNKYVIRSC 445 (517)
Q Consensus 383 ~~~~~----~~-------~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~----~~~~~~~i~~~ 445 (517)
..... .. .........++++|.++.|+++.......+|.+... ......... .......+..+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 54331 11 122334689999999988888776655555555321 011111111 00001112222
Q ss_pred cCCC-CCcEEEEecCCCcEEEEecCCCceeEEecCCC---------CCeeEEEecCCCCcEEEEeeCCCcEEEeCCC
Q 042434 446 FGGL-DGTFIASGSENSQIYIWNRRNSKPIEILSGHS---------MTVNCVSWNPKRPKMLASASDDHTIRIWGPC 512 (517)
Q Consensus 446 ~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~ 512 (517)
.+.| .+.+++.......|.++|.. |+.+..+.-.. ..--.|+|.++| +++++ +.-+.++++...
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G-~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASG-NIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTC-CEEEE-ETTTEEEEEEC-
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCC-CEEEE-cCCceEEEEEec
Confidence 3333 56777777788899999965 66666554221 245799999999 55554 777766666543
No 277
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.51 E-value=7.4e-05 Score=72.11 Aligned_cols=241 Identities=12% Similarity=0.138 Sum_probs=145.0
Q ss_pred CEEEEEECC-CCCeEEEE-eCCCeEEEEECCCCcEEEEeCCC---CCceEEEEE-------eCCCCeEEEeeCCC-----
Q 042434 269 PVSFVAWSP-DDTKLLTC-GNAEVLKLWDVETGICKHTFGDH---GFIVSSCAW-------FPDSKRLVCGSSDT----- 331 (517)
Q Consensus 269 ~v~~l~~s~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~i~~-------~~~~~~l~~~~~d~----- 331 (517)
....|+|+| ++..|+.+ ...+.|++.|..++......... ......++| ++++..++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356899998 35445544 44467899998887766544322 235899999 99999777776654
Q ss_pred ceeEEEEeCCC--Cee-----EeeeCcCCCceEEEEEccC-CCEEEEEeCCCcEEEEECC-------CceE---------
Q 042434 332 EKGIFMCDCDG--NEI-----KAWRGTRIPKVLDLAVTPD-GENLISVLSDKDIRILNLG-------TYAE--------- 387 (517)
Q Consensus 332 ~v~i~~~~~~~--~~~-----~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~-------~~~~--------- 387 (517)
...++.++... ... ..+.. ......++++|+ +.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~--~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA--YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE--ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred CceEEEEecCCCCceeecccceeecc--CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 23466665332 111 11211 124567889995 4455566677889999987 3332
Q ss_pred ----E--eeccCCCeeEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCcc---ceEEeCc---cc---C-------ceEEEe
Q 042434 388 ----R--VISEEHPITSLSVSVDCKNFI-VNLNSQEIHMWDVAGKWEK---PFKYTGH---SQ---N-------KYVIRS 444 (517)
Q Consensus 388 ----~--~~~~~~~i~~~~~s~~~~~l~-~~~~d~~i~~~d~~~~~~~---~~~~~~~---~~---~-------~~~i~~ 444 (517)
. ..........++|+|+|+.++ +-+..+.|+.++....... ...+.+. .. . ......
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 1 112234567999999999644 4456788999776432111 1222221 00 0 011101
Q ss_pred ecCC-------CCCcEEEEecCCCcEEEEecCCCceeEEecCC------------------------CCCeeEEEecCC-
Q 042434 445 CFGG-------LDGTFIASGSENSQIYIWNRRNSKPIEILSGH------------------------SMTVNCVSWNPK- 492 (517)
Q Consensus 445 ~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h------------------------~~~v~~v~~~~~- 492 (517)
++.. ++|.++++-..+..|+.++ .+|. +.++.+. -....+|+++++
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 2222 4567777777788899998 4564 3344221 123678999997
Q ss_pred CCcEEEEeeCCCcEEEeCCCCC
Q 042434 493 RPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 493 ~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
+ .++++=.....||.+++...
T Consensus 456 g-~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 456 E-MFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp T-EEEEEETTTTEEEEEEECCC
T ss_pred C-EEEEEeCCCCEEEEEECCCC
Confidence 6 67777777888999887654
No 278
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.50 E-value=0.00016 Score=68.67 Aligned_cols=201 Identities=12% Similarity=0.018 Sum_probs=128.6
Q ss_pred ccCcEEEEEECCCCCEE-EEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCeEEEEECCC
Q 042434 221 HKNEVWFVQFSNNGEYL-ASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWDVET 298 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~ 298 (517)
....+..++|++.+..| ++-...+.|..++...... ...+.........+++.+.+..| ++-...+.|.+.++..
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~---~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg 190 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV---EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 190 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE---EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc---EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence 34457789999755544 4545667888888764421 12222223345678888755444 5555577898888865
Q ss_pred CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcE
Q 042434 299 GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDI 377 (517)
Q Consensus 299 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i 377 (517)
......+...-.....+++.|.+..++.+.....-+|+.++.++.....+..........++++|++..|+.+. ..+.|
T Consensus 191 ~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I 270 (386)
T 3v65_B 191 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 270 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEE
T ss_pred CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEE
Confidence 54444444444567899999987777766654434499999988766555444444678999998777666554 46789
Q ss_pred EEEECCCce-EEee-ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 378 RILNLGTYA-ERVI-SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 378 ~i~d~~~~~-~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
..+|+.... .... ........+++ ..+..+++....+.|..+|..++
T Consensus 271 ~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 271 ERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred EEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 999987544 2222 23345677777 34455556666778888885443
No 279
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.49 E-value=2.7e-06 Score=87.16 Aligned_cols=240 Identities=12% Similarity=0.092 Sum_probs=138.3
Q ss_pred EEEECC-CCCeEEEEeCCC-----------eEEEEECCCCcEEE--EeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEE
Q 042434 272 FVAWSP-DDTKLLTCGNAE-----------VLKLWDVETGICKH--TFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIF 336 (517)
Q Consensus 272 ~l~~s~-~~~~l~s~~~dg-----------~i~iwd~~~~~~~~--~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~ 336 (517)
++++.+ +++.++.|+.+. .+.+||..+++... .+. .+.....++++..+++.+++|+.++. .++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~-~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK-KTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTT-CEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCC-ceE
Confidence 556667 888888887543 58899998876322 221 23333445778889999999986543 389
Q ss_pred EEeCCCCeeEeeeCcCCC-ceEEEEEccCCCEEEEEe-CC-----CcEEEEECCCceEEeec------cCCCeeEEEEcC
Q 042434 337 MCDCDGNEIKAWRGTRIP-KVLDLAVTPDGENLISVL-SD-----KDIRILNLGTYAERVIS------EEHPITSLSVSV 403 (517)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~------~~~~i~~~~~s~ 403 (517)
.||.....-......... .-.+++..++++.++.|+ .+ ..+.+||..+..-.... ....-....+..
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 999876554433222211 224566677999999988 34 57999999887622211 000000112234
Q ss_pred CCCEEEEEeCC---------CeEEEEEcCCCCccceEEeCccc-------CceEEEeecCCCCCcEEEEecCCC------
Q 042434 404 DCKNFIVNLNS---------QEIHMWDVAGKWEKPFKYTGHSQ-------NKYVIRSCFGGLDGTFIASGSENS------ 461 (517)
Q Consensus 404 ~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg------ 461 (517)
++..++.++.+ ..+..||..+..- ......... .......++-..+++++++|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~ 427 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 427 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcce-eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence 55555555444 3567888765421 111111110 000111111024788888888543
Q ss_pred -----cEEEEecCCCceeEEe--cCCCCCe-eEEEecCCCCcEEEEeeCC-----------CcEEEeCCCCC
Q 042434 462 -----QIYIWNRRNSKPIEIL--SGHSMTV-NCVSWNPKRPKMLASASDD-----------HTIRIWGPCQS 514 (517)
Q Consensus 462 -----~i~iwd~~~~~~~~~~--~~h~~~v-~~v~~~~~~~~~l~s~~~d-----------g~v~iw~~~~~ 514 (517)
.|.+||..+....... ..+.... .+.+..|++ ++++.||.+ ..+.+||+.+.
T Consensus 428 ~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 428 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred CCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 6888888876654433 2222222 344666888 788988865 46888887653
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.48 E-value=0.00047 Score=63.36 Aligned_cols=202 Identities=12% Similarity=-0.012 Sum_probs=127.8
Q ss_pred ccCcEEEEEECCCCCEEE-EeeCCCcEEEEEecCC---CeeeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCeEEEEE
Q 042434 221 HKNEVWFVQFSNNGEYLA-SSSSDCSAIIWKVLED---SKLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWD 295 (517)
Q Consensus 221 h~~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~---~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd 295 (517)
....+..++|++.+..|+ +-...+.|..++.... .... ..+...-.....+++.+.+..| ++-...+.|.+.+
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~--~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~ 105 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD--TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 105 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE--EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE--EEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEe
Confidence 345678999998655454 4455688988888641 1111 1222222455788888655444 5556678999999
Q ss_pred CCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CC
Q 042434 296 VETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SD 374 (517)
Q Consensus 296 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d 374 (517)
.........+.........+++.|.+..++.+.....-+|+.++.++.....+..........+++++++..|+.+. ..
T Consensus 106 ~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~ 185 (316)
T 1ijq_A 106 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 185 (316)
T ss_dssp TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCC
Confidence 87554433333334567899999977766666554223489999888766555433445688999999877776655 45
Q ss_pred CcEEEEECCCce-EEeec---cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 375 KDIRILNLGTYA-ERVIS---EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 375 g~i~i~d~~~~~-~~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
+.|..+|+.... ..... .......+++. .+..+++....+.|..++..++
T Consensus 186 ~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 186 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 689999997644 22222 12345677775 3555556666788888887554
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.46 E-value=3.4e-05 Score=74.28 Aligned_cols=153 Identities=11% Similarity=0.131 Sum_probs=94.6
Q ss_pred cEEEEEECC-CCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC-C----eEEEEECC
Q 042434 224 EVWFVQFSN-NGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-E----VLKLWDVE 297 (517)
Q Consensus 224 ~v~~~~~s~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g----~i~iwd~~ 297 (517)
....++++| ++..|..+...+.|+.+|...+ .. ..+.........++|+++++.|+++... + .+.+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-~v---~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-YV---STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT-EE---EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC-EE---EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 557889998 4555666655578888887543 22 2233345668999999999966665542 2 2333443
Q ss_pred CCcEE--EEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCCeeEe-eeCcCCCceEEEEEccCCCEEEEE-e
Q 042434 298 TGICK--HTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGNEIKA-WRGTRIPKVLDLAVTPDGENLISV-L 372 (517)
Q Consensus 298 ~~~~~--~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~-~ 372 (517)
.+... ..+. .......++++| ++..+++-..++. |+.++..+..... ...........++++|+|++++.+ .
T Consensus 213 ~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~--V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 213 ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQ--VFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTE--EEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCE--EEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 33221 2221 123356788999 5665555545555 9999998766522 222222357789999999955544 5
Q ss_pred CCCcEEEEECCC
Q 042434 373 SDKDIRILNLGT 384 (517)
Q Consensus 373 ~dg~i~i~d~~~ 384 (517)
..+.|..++...
T Consensus 290 ~~~~I~~~~~d~ 301 (430)
T 3tc9_A 290 NQHYILRSDYDW 301 (430)
T ss_dssp TTTEEEEEEEET
T ss_pred CCCEEEEEeCCc
Confidence 677899987653
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.41 E-value=0.00064 Score=62.38 Aligned_cols=226 Identities=11% Similarity=0.020 Sum_probs=137.1
Q ss_pred CCcEEEEEecCCC-eeeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCeEEEEECCCCcE-EEEeCCCCCceEEEEEeC
Q 042434 243 DCSAIIWKVLEDS-KLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWDVETGIC-KHTFGDHGFIVSSCAWFP 319 (517)
Q Consensus 243 dg~i~iw~~~~~~-~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~ 319 (517)
...|+..++.... ..... +. ....+..++|++.+..| .+-...+.|..+++..+.. ...+...-.....+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~--~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIV--VG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCCEEE--EE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEEEEE--ec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence 3578888886543 11111 11 12346789999865555 4545677899999876532 112222223456788887
Q ss_pred CCCeEEEe-eCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC--CCcEEEEECCCce-EEee-ccCC
Q 042434 320 DSKRLVCG-SSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS--DKDIRILNLGTYA-ERVI-SEEH 394 (517)
Q Consensus 320 ~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~-~~~~-~~~~ 394 (517)
.+..|+.+ ...+. |..++..+.....+..........+++.|.+..++.+.. .+.|..+++.... .... ..-.
T Consensus 89 ~~g~ly~~d~~~~~--I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~ 166 (318)
T 3sov_A 89 LGEKLYWTDSETNR--IEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY 166 (318)
T ss_dssp TTTEEEEEETTTTE--EEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred CCCeEEEEECCCCE--EEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCC
Confidence 55555544 34455 888888876655554444456789999997766666653 5789999887544 2222 2345
Q ss_pred CeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce
Q 042434 395 PITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP 473 (517)
Q Consensus 395 ~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 473 (517)
....+++++++..|+.+ +..+.|..+|+.+.... ....+.......+.. . .+.++++-...+.|..++..+|+.
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~P~glav---~-~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSLPHPFALTL---F-EDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSCCSCEEEEEE---E-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE-EEecCCCCCceEEEE---e-CCEEEEEecCCCeEEEEECCCCCc
Confidence 67899999976666555 55778999998754222 112211122222222 2 345566666778899999877776
Q ss_pred eEEec
Q 042434 474 IEILS 478 (517)
Q Consensus 474 ~~~~~ 478 (517)
...+.
T Consensus 242 ~~~i~ 246 (318)
T 3sov_A 242 LREIH 246 (318)
T ss_dssp CEEEE
T ss_pred eEEEe
Confidence 55554
No 283
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.38 E-value=0.0006 Score=61.57 Aligned_cols=207 Identities=10% Similarity=0.110 Sum_probs=132.2
Q ss_pred eccccCcEEEEEECCCCCEEEEee-CCCcEEEEEecCCCeeeEEEEecc----CCC--CEEEEEE---CCCCCeEEEEe-
Q 042434 218 LTEHKNEVWFVQFSNNGEYLASSS-SDCSAIIWKVLEDSKLTLKHTLRS----HQN--PVSFVAW---SPDDTKLLTCG- 286 (517)
Q Consensus 218 l~~h~~~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~----h~~--~v~~l~~---s~~~~~l~s~~- 286 (517)
+....--..+++|.+....+..++ ..|+|..|+...+.. ... .+.+ ... .+..+.| .|+++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~-~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~ 85 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH-FNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN 85 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE-EEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE-EEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence 333444455788988555555555 789999999864322 222 3322 111 3689999 68877777543
Q ss_pred ------------CCCeEEEEECC---CCcEEEEeC--C-----------CCCceEEEEEeCCCCeEEEeeCC-CceeEEE
Q 042434 287 ------------NAEVLKLWDVE---TGICKHTFG--D-----------HGFIVSSCAWFPDSKRLVCGSSD-TEKGIFM 337 (517)
Q Consensus 287 ------------~dg~i~iwd~~---~~~~~~~~~--~-----------~~~~v~~i~~~~~~~~l~~~~~d-~~v~i~~ 337 (517)
.+..|..+|+. +++.+.... . .......++..++|+..++++.. +. |+.
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~--I~r 163 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA--IAR 163 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE--EEE
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe--EEE
Confidence 25789999998 777655442 1 11357889999999999999888 87 999
Q ss_pred EeCCCCeeEeeeCcC-----CCceEEEEEccCCCEEEEEeCCCcEEEEECCCceE--Eee---c---cCCCeeEE-EEcC
Q 042434 338 CDCDGNEIKAWRGTR-----IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYAE--RVI---S---EEHPITSL-SVSV 403 (517)
Q Consensus 338 ~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~---~---~~~~i~~~-~~s~ 403 (517)
++.++.....+.... ....+.|+++|+|+.|++....|.+..+|+..... ... . .......+ ..-.
T Consensus 164 V~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~ 243 (334)
T 2p9w_A 164 VSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV 243 (334)
T ss_dssp ECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE
T ss_pred EeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccccc
Confidence 999987655443211 12366899999999999887899999999885432 111 1 11223443 3334
Q ss_pred CCCEEEEEe-CCCeEEEEEcCCCCccc
Q 042434 404 DCKNFIVNL-NSQEIHMWDVAGKWEKP 429 (517)
Q Consensus 404 ~~~~l~~~~-~d~~i~~~d~~~~~~~~ 429 (517)
+|+.++++. ..+.+.+.+... |...
T Consensus 244 ~G~vllV~~~~~~~~~l~S~Dg-W~sa 269 (334)
T 2p9w_A 244 GNESVLVGARAPYAISFRSWDN-WKSA 269 (334)
T ss_dssp TTEEEEEEEETTEEEEEECSST-TSEE
T ss_pred CCEEEEEEcCCCCEEEEECCCC-ccee
Confidence 677755544 455555555433 4433
No 284
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.35 E-value=3.5e-05 Score=67.22 Aligned_cols=152 Identities=8% Similarity=0.025 Sum_probs=103.4
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCeeE--EEEcCCCCEEEEEeCCCeEEEEEcCCCCcc
Q 042434 352 RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPITS--LSVSVDCKNFIVNLNSQEIHMWDVAGKWEK 428 (517)
Q Consensus 352 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~~--~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~ 428 (517)
.......+.|+ ++.+.++.+.+|.|+++|+.+++ .... ....... +++.. ++.+.+.-.++.+.+||..+. ..
T Consensus 53 ~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl-~~ 128 (268)
T 3nok_A 53 TNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPP-QR 128 (268)
T ss_dssp TTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTT-EE
T ss_pred CccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcC-cE
Confidence 33456788887 45666777788899999999988 2222 3333333 44433 234444556889999999877 55
Q ss_pred ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC-----CCeeEEEecCCCCcEEEEeeCC
Q 042434 429 PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS-----MTVNCVSWNPKRPKMLASASDD 503 (517)
Q Consensus 429 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~v~~~~~~~~~l~s~~~d 503 (517)
...+.....+ +.+ .+|++.|+.+..++.|.++|..+.+.+.++.... ..++.+.|. +| .+++..-.+
T Consensus 129 ~~ti~~~~eG-wGL-----t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s 200 (268)
T 3nok_A 129 ERTTRYSGEG-WGL-----CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHS 200 (268)
T ss_dssp EEEEECSSCC-CCE-----EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTC
T ss_pred EEEEeCCCce-eEE-----ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCC
Confidence 5555543222 222 2467777777778999999999999888876421 245778887 66 666666678
Q ss_pred CcEEEeCCCCCC
Q 042434 504 HTIRIWGPCQSS 515 (517)
Q Consensus 504 g~v~iw~~~~~~ 515 (517)
+.|.+-|+.+++
T Consensus 201 ~~I~vIDp~TG~ 212 (268)
T 3nok_A 201 SDVLEIDPATGT 212 (268)
T ss_dssp SEEEEECTTTCB
T ss_pred CeEEEEeCCCCc
Confidence 899999999886
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.33 E-value=0.0016 Score=67.38 Aligned_cols=224 Identities=10% Similarity=-0.005 Sum_probs=138.2
Q ss_pred CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEE-EEeCCCeEEEEECCCC----cEEEEeCCCCCceEEEEEe
Q 042434 244 CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLL-TCGNAEVLKLWDVETG----ICKHTFGDHGFIVSSCAWF 318 (517)
Q Consensus 244 g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~ 318 (517)
..|+..++..... . .+......+..++|++.+..|+ +-...+.|+.+++... .....+.........|++.
T Consensus 404 ~~Ir~i~l~~~~~-~---~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 404 HEVRKMTLDRSEY-T---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp SSEEEECTTSCCC-E---EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cceeEeeccCCcc-e---eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 4577666653322 1 1223456678999998555554 5455678999988652 2233443344556789998
Q ss_pred CCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC--CCcEEEEECCCceEEee--ccC
Q 042434 319 PDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS--DKDIRILNLGTYAERVI--SEE 393 (517)
Q Consensus 319 ~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~--~~~ 393 (517)
+.++.|+.+.. .+. |...++.+.....+..........|++.|.+..|+.... .+.|.+.++.......+ ...
T Consensus 480 ~~~~~LY~tD~~~~~--I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l 557 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGT--VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI 557 (791)
T ss_dssp TTTTEEEEEETTTTE--EEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC
T ss_pred ecCCcEEEEecCCCe--EEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCC
Confidence 87766665544 444 888999887766665544456889999998766666553 26899999876653322 233
Q ss_pred CCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEeCc--ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC
Q 042434 394 HPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGH--SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN 470 (517)
Q Consensus 394 ~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 470 (517)
.....+++++.+..|+.+ ...+.|..+++.+... ....... ......+.. ..+.++++-...+.|...|..+
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav----~~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAV----FEDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEE----ETTEEEEEETTTTEEEEEETTT
T ss_pred CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEE----eCCEEEEEECCCCEEEEEeCCC
Confidence 578899999876666655 4567899999876522 2222221 112222222 1345555555667888888777
Q ss_pred CceeEEec
Q 042434 471 SKPIEILS 478 (517)
Q Consensus 471 ~~~~~~~~ 478 (517)
|+.+..+.
T Consensus 633 G~~~~~l~ 640 (791)
T 3m0c_C 633 GSDVNLLA 640 (791)
T ss_dssp CCCCEEEE
T ss_pred CcceEEee
Confidence 76655554
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.32 E-value=0.00029 Score=67.83 Aligned_cols=194 Identities=9% Similarity=0.082 Sum_probs=112.8
Q ss_pred CcEEEEEECCC--CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC---Ce-EEEEEC
Q 042434 223 NEVWFVQFSNN--GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA---EV-LKLWDV 296 (517)
Q Consensus 223 ~~v~~~~~s~~--~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d---g~-i~iwd~ 296 (517)
.....++|+|+ +..|..+...+.|+.++..++. . ..+.........++|+++|+++++.... .. +...+.
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~-v---~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY-V---DIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE-E---EEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCE-E---EEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEEC
Confidence 34678999984 3345444444889999875442 2 2333345668999999999944443311 12 333332
Q ss_pred CCCcE-EEEeCCCCCceEEEEEeC-CCCeEEEeeCCCceeEEEEeCCCCee-Eee-eCcCCCceEEEEEccCCCEEEEEe
Q 042434 297 ETGIC-KHTFGDHGFIVSSCAWFP-DSKRLVCGSSDTEKGIFMCDCDGNEI-KAW-RGTRIPKVLDLAVTPDGENLISVL 372 (517)
Q Consensus 297 ~~~~~-~~~~~~~~~~v~~i~~~~-~~~~l~~~~~d~~v~i~~~~~~~~~~-~~~-~~~~~~~i~~~~~~~~~~~l~~~~ 372 (517)
..+.. ...+. .......+++.| ++.++++-..++. |+.++..+..+ ..+ ..........++++|+++.|+.+.
T Consensus 215 ~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~--V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 215 ASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAM--ISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp GGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSE--EEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred CCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCE--EEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 22211 01111 123346688899 5655555555565 89999874433 222 222222345799999999555554
Q ss_pred -CCCcEEEEECCC--ce----EEeec---------------cCCCeeEEEE---------cCCCCEEEEEeCCCeEEEEE
Q 042434 373 -SDKDIRILNLGT--YA----ERVIS---------------EEHPITSLSV---------SVDCKNFIVNLNSQEIHMWD 421 (517)
Q Consensus 373 -~dg~i~i~d~~~--~~----~~~~~---------------~~~~i~~~~~---------s~~~~~l~~~~~d~~i~~~d 421 (517)
..+.|+.++... .. ..... .-.....+++ .+++..+++-...+.|+.++
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 567899988652 21 11111 1123567888 67777777777788999998
Q ss_pred cC
Q 042434 422 VA 423 (517)
Q Consensus 422 ~~ 423 (517)
..
T Consensus 372 ~~ 373 (433)
T 4hw6_A 372 PE 373 (433)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 287
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.30 E-value=0.00011 Score=63.45 Aligned_cols=155 Identities=12% Similarity=0.107 Sum_probs=102.3
Q ss_pred cCCCceEEEEEccCCCEEEEEeCC--CcEEEEECCCce-EEeeccCCCeeEEEEcCCCCEEEE-EeCCCeEEEEEcCCCC
Q 042434 351 TRIPKVLDLAVTPDGENLISVLSD--KDIRILNLGTYA-ERVISEEHPITSLSVSVDCKNFIV-NLNSQEIHMWDVAGKW 426 (517)
Q Consensus 351 ~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~-~~~d~~i~~~d~~~~~ 426 (517)
........+.|++ +....+.+.. ..|+.+|+.+++ ..............+.+.++.+.. .-.++.+.+||..+.
T Consensus 18 d~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl- 95 (243)
T 3mbr_X 18 DTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATL- 95 (243)
T ss_dssp CTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTT-
T ss_pred CCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcC-
Confidence 3334677888886 5555555554 489999999988 333333334433333334445444 456889999999876
Q ss_pred ccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCC-----CCeeEEEecCCCCcEEEEee
Q 042434 427 EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHS-----MTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 427 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~v~~~~~~~~~l~s~~ 501 (517)
.....+..... .+.+. +++..|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +| .+++..-
T Consensus 96 ~~~~ti~~~~~-Gwglt-----~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G-~lyanvw 167 (243)
T 3mbr_X 96 TPRARFRYPGE-GWALT-----SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG-ELLANVW 167 (243)
T ss_dssp EEEEEEECSSC-CCEEE-----ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEET
T ss_pred cEEEEEeCCCC-ceEEe-----eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC-EEEEEEC
Confidence 55555554332 22332 456666666668899999999999888876422 356777876 56 5666665
Q ss_pred CCCcEEEeCCCCCC
Q 042434 502 DDHTIRIWGPCQSS 515 (517)
Q Consensus 502 ~dg~v~iw~~~~~~ 515 (517)
.+..|.+.|+.+++
T Consensus 168 ~s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 168 LTSRIARIDPASGK 181 (243)
T ss_dssp TTTEEEEECTTTCB
T ss_pred CCCeEEEEECCCCC
Confidence 67899999999886
No 288
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.24 E-value=0.001 Score=60.95 Aligned_cols=200 Identities=13% Similarity=-0.037 Sum_probs=127.4
Q ss_pred CcEEEEEECCC-CCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCCCc
Q 042434 223 NEVWFVQFSNN-GEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVETGI 300 (517)
Q Consensus 223 ~~v~~~~~s~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~ 300 (517)
..+..++|++. +.+.++-...+.|..++.......... +...-.....+++.+.+ ++.++-...+.|.++++....
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~--~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~ 112 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV--VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 112 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE--EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE--EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence 45678999985 444455556778888888654221111 11222345678888744 444555567899999986554
Q ss_pred EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEEE
Q 042434 301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIRI 379 (517)
Q Consensus 301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i 379 (517)
....+.........+++.|.+..++.+.....-+|+.++.++.....+..........+++++++..|+.+. ..+.|..
T Consensus 113 ~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~ 192 (318)
T 3sov_A 113 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 192 (318)
T ss_dssp CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEE
Confidence 333333445567899999977777666543233499999987665554433344678999999777666654 5678999
Q ss_pred EECCCce-EEeec-cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 380 LNLGTYA-ERVIS-EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 380 ~d~~~~~-~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
+|+.... ..... .......+++. .+..+++....+.|..++..++
T Consensus 193 ~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 193 SNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp EETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred EcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCC
Confidence 9987544 22222 34456677775 3345555556788888888554
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.23 E-value=0.0017 Score=59.97 Aligned_cols=231 Identities=8% Similarity=-0.014 Sum_probs=123.9
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcE
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGIC 301 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 301 (517)
...+.++.|++ +..++. +.+|.|.. ..+.+..+........+.+.+..+.+.+++..++++ .+|.|.. ..+.|+.
T Consensus 79 ~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence 45788999986 444444 45564433 333345554333222234567888887777666655 4554422 1223432
Q ss_pred E-EEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEE
Q 042434 302 K-HTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRI 379 (517)
Q Consensus 302 ~-~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 379 (517)
- .........+..+.+.+++.+++++. +|. ++.-... +..-..........+..+.+.+++..+ +++.+|.+++
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~--~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~ 229 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSS-RGS--FYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAF 229 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEET-TSS--EEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEE
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEEC-CCc--EEEEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEE
Confidence 2 22234556788999999887776654 454 5544332 333333333334478889999988755 4556788877
Q ss_pred EECCCceEEe---ec---cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe---CcccCceEEEeecCCCC
Q 042434 380 LNLGTYAERV---IS---EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT---GHSQNKYVIRSCFGGLD 450 (517)
Q Consensus 380 ~d~~~~~~~~---~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~~~~i~~~~~s~~ 450 (517)
.+...+.... .. ....+..+.+.+++..++++. ++.+ ++....+ ..-.... ......+.+.. .++
T Consensus 230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG-~tW~~~~~~~~~~~~~~~v~~---~~~ 303 (327)
T 2xbg_A 230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG-QTWQQDVDVKKVPSNFYKILF---FSP 303 (327)
T ss_dssp EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT-SSCEECGGGTTSSSCCCEEEE---EET
T ss_pred ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC-cccEEcCccCCCCCCeEEEEE---ECC
Confidence 6533233111 11 223578888998777666554 5655 3333333 1111111 11122222322 334
Q ss_pred CcEEEEecCCCcEEEEec
Q 042434 451 GTFIASGSENSQIYIWNR 468 (517)
Q Consensus 451 ~~~l~~~~~dg~i~iwd~ 468 (517)
+. +++++.+|.|.-++-
T Consensus 304 ~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 304 DQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp TE-EEEECSTTEEEEECC
T ss_pred Cc-eEEEcCCceEEEEcC
Confidence 44 556667888776653
No 290
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.23 E-value=0.0015 Score=61.00 Aligned_cols=202 Identities=14% Similarity=0.128 Sum_probs=110.3
Q ss_pred EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec---cCCCCEEEEEECCC---CCeEEEEeC-C-
Q 042434 217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR---SHQNPVSFVAWSPD---DTKLLTCGN-A- 288 (517)
Q Consensus 217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~---~h~~~v~~l~~s~~---~~~l~s~~~-d- 288 (517)
.+...-...+.++|.|+|+++++ ..+|.|.+++ ++ ....+..+. ........++|+|+ +..|+.+.. .
T Consensus 25 ~va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~ 100 (352)
T 2ism_A 25 EVVGGLEVPWALAFLPDGGMLIA-ERPGRIRLFR--EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAE 100 (352)
T ss_dssp EEECCCSCEEEEEECTTSCEEEE-ETTTEEEEEE--TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECT
T ss_pred EEECCCCCceEEEEcCCCeEEEE-eCCCeEEEEE--CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCC
Confidence 33333456789999999996555 5669999888 23 333333222 22456899999998 555544433 2
Q ss_pred ----CeEEEEECCCCc-----EE-EEeC---CCCCceEEEEEeCCCCeEEEeeCCCc-----------eeEEEEeCCCC-
Q 042434 289 ----EVLKLWDVETGI-----CK-HTFG---DHGFIVSSCAWFPDSKRLVCGSSDTE-----------KGIFMCDCDGN- 343 (517)
Q Consensus 289 ----g~i~iwd~~~~~-----~~-~~~~---~~~~~v~~i~~~~~~~~l~~~~~d~~-----------v~i~~~~~~~~- 343 (517)
+.|..++...+. .+ ..+. ........++|.|||.++++.+..+. -+|+.++.++.
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~ 180 (352)
T 2ism_A 101 GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP 180 (352)
T ss_dssp TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence 578888876442 11 1232 11123468999999977666443211 24888887762
Q ss_pred ------------eeEeeeCcCCCceEEEEEcc-CCCEEEEEeCCCc--------EEEEECCCc---------------e-
Q 042434 344 ------------EIKAWRGTRIPKVLDLAVTP-DGENLISVLSDKD--------IRILNLGTY---------------A- 386 (517)
Q Consensus 344 ------------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~--------i~i~d~~~~---------------~- 386 (517)
....+.... .....++|+| ++..+++-...+. |.+...... .
T Consensus 181 p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~ 259 (352)
T 2ism_A 181 APGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRD 259 (352)
T ss_dssp CTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred CCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcC
Confidence 111121111 2466789999 5665554333332 333322110 0
Q ss_pred -EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434 387 -ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAG 424 (517)
Q Consensus 387 -~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 424 (517)
............++| .+|..+++....+.|...++..
T Consensus 260 p~~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~ 297 (352)
T 2ism_A 260 PLYFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEG 297 (352)
T ss_dssp CSEECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEE
T ss_pred CeEecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECC
Confidence 011112223456666 4566666666677787777754
No 291
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.20 E-value=0.0073 Score=60.86 Aligned_cols=203 Identities=13% Similarity=-0.022 Sum_probs=126.0
Q ss_pred cccCcEEEEEECCCCCEEEEee-CCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCeEEEEECC
Q 042434 220 EHKNEVWFVQFSNNGEYLASSS-SDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWDVE 297 (517)
Q Consensus 220 ~h~~~v~~~~~s~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~ 297 (517)
..-..+..++|++.+..|..+. ..+.|..++....... ...+...-.....+++.+.+..| ++-...+.|.+.++.
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~--~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d 114 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD 114 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C--EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce--EEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC
Confidence 3445678999999666565544 4677888887533211 12233333568899999865555 455567899999987
Q ss_pred CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCc
Q 042434 298 TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKD 376 (517)
Q Consensus 298 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~ 376 (517)
.......+...-.....+++.|.+..++.+.....-+|+..++++.....+..........+++++++..|+.+. ..+.
T Consensus 115 G~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~ 194 (619)
T 3s94_A 115 GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF 194 (619)
T ss_dssp SCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCC
T ss_pred CCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCe
Confidence 654433333444557789999987666666543233488888888766555544445788999999777666554 4678
Q ss_pred EEEEECCCceEEeec--cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 377 IRILNLGTYAERVIS--EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 377 i~i~d~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
|..+|+......... .......+++..+ ..+++-...+.|...|..++
T Consensus 195 I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 195 IHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp EEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred EEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence 999998765422221 2223356677655 44444455778888887543
No 292
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.19 E-value=0.0026 Score=59.29 Aligned_cols=202 Identities=11% Similarity=0.093 Sum_probs=112.5
Q ss_pred eccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEec---cCCCCEEEEEECCC---CCeEEEEeC----
Q 042434 218 LTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLR---SHQNPVSFVAWSPD---DTKLLTCGN---- 287 (517)
Q Consensus 218 l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~---~h~~~v~~l~~s~~---~~~l~s~~~---- 287 (517)
+...-...+.++|.|+|+++++ ..+|.|++++. ++ . ..+..+. ........|+|+|+ +..|+++..
T Consensus 24 va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G-~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~ 99 (354)
T 3a9g_A 24 VASDLEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SG-K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAE 99 (354)
T ss_dssp EECSCSCEEEEEEEETTEEEEE-ETTTEEEEECS-SC-E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECG
T ss_pred EeCCCCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CC-c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCC
Confidence 3333456789999999985555 56699988863 23 2 3333221 22356899999997 445544332
Q ss_pred C----CeEEEEECCCC--c-----EE-EEeCC-CCCceEEEEEeCCCCeEEEeeCCCc-----------eeEEEEeCCCC
Q 042434 288 A----EVLKLWDVETG--I-----CK-HTFGD-HGFIVSSCAWFPDSKRLVCGSSDTE-----------KGIFMCDCDGN 343 (517)
Q Consensus 288 d----g~i~iwd~~~~--~-----~~-~~~~~-~~~~v~~i~~~~~~~~l~~~~~d~~-----------v~i~~~~~~~~ 343 (517)
+ ..|..|+...+ . .+ ..+.. .......++|.|||.++++.+..+. -+|+.++.++.
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~ 179 (354)
T 3a9g_A 100 GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR 179 (354)
T ss_dssp GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence 3 56777776544 1 11 11221 1123467999999987776543211 13888887764
Q ss_pred --------eeEeeeCcCCCceEEEEEcc-CCCEEEEEeCCC---cEEEEECCCc---------------e--EEee-ccC
Q 042434 344 --------EIKAWRGTRIPKVLDLAVTP-DGENLISVLSDK---DIRILNLGTY---------------A--ERVI-SEE 393 (517)
Q Consensus 344 --------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~---------------~--~~~~-~~~ 393 (517)
....+.... .....++|+| ++..+++-...+ .|.+...... . .... ...
T Consensus 180 ~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ 258 (354)
T 3a9g_A 180 PPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSET 258 (354)
T ss_dssp CCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred CCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence 112222222 2466899999 565544432222 2443322110 0 0111 123
Q ss_pred CCeeEEEEc-------CCCCEEEEEeCCCeEEEEEcCC
Q 042434 394 HPITSLSVS-------VDCKNFIVNLNSQEIHMWDVAG 424 (517)
Q Consensus 394 ~~i~~~~~s-------~~~~~l~~~~~d~~i~~~d~~~ 424 (517)
.....++|. .+|.++++....+.|...++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 356777773 4676676666777888888864
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.18 E-value=0.002 Score=66.58 Aligned_cols=204 Identities=12% Similarity=-0.028 Sum_probs=127.0
Q ss_pred ccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCe-eeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCeEEEEECC
Q 042434 221 HKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSK-LTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWDVE 297 (517)
Q Consensus 221 h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~ 297 (517)
....+..++|++... ++++-...+.|+.+++..... ......+.........|++.+.+..| ++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 345677899988544 444545567788888753211 01112233234556788888776555 455567899999987
Q ss_pred CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCc
Q 042434 298 TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKD 376 (517)
Q Consensus 298 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~ 376 (517)
.......+...-.....|++.|.+..|+.+.....-+|+..++.+.....+..........|++++.+..|+.+. ..+.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~ 581 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 581 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence 555443443444568899999987777766644323499999998777666655555788999998777776664 4568
Q ss_pred EEEEECCCceE-Eeecc---CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 377 IRILNLGTYAE-RVISE---EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 377 i~i~d~~~~~~-~~~~~---~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
|..+++..... .+... ......+++.. +..+++-...+.|...|..++
T Consensus 582 I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 582 ISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred EEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence 99999876552 22221 22344566532 234444455678888876544
No 294
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.17 E-value=0.0013 Score=59.47 Aligned_cols=207 Identities=8% Similarity=0.036 Sum_probs=126.3
Q ss_pred eccCCCCEEEEEECCCCCeEEEEe-CCCeEEEEECCCCcEEEE-eCC----C--CCceEEEEE---eCCCCeEEEeeC--
Q 042434 263 LRSHQNPVSFVAWSPDDTKLLTCG-NAEVLKLWDVETGICKHT-FGD----H--GFIVSSCAW---FPDSKRLVCGSS-- 329 (517)
Q Consensus 263 ~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~-~~~----~--~~~v~~i~~---~~~~~~l~~~~~-- 329 (517)
+......--+++|++....+..++ ..++|..||...+..... +.. . ...+..+.| .|+++++++...
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 333444456789987555555555 799999999976654433 221 1 124688999 588777775431
Q ss_pred ---------CCceeEEEEeCC----CCeeEeeeCc------------CCCceEEEEEccCCCEEEEEeCC-CcEEEEECC
Q 042434 330 ---------DTEKGIFMCDCD----GNEIKAWRGT------------RIPKVLDLAVTPDGENLISVLSD-KDIRILNLG 383 (517)
Q Consensus 330 ---------d~~v~i~~~~~~----~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~ 383 (517)
+|.-.+..+|+. ++.+...... .......++..++|+..++++.. +.|..++..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 123348889987 4443322211 22358899999999999999888 888888877
Q ss_pred CceEE-ee-c-----cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEe--Cc---ccCceEEEeecCCCCC
Q 042434 384 TYAER-VI-S-----EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYT--GH---SQNKYVIRSCFGGLDG 451 (517)
Q Consensus 384 ~~~~~-~~-~-----~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~---~~~~~~i~~~~~s~~~ 451 (517)
..... .. . .....+.++++|+|+.|++....+.+..+|+........... +. ......+ +....+|
T Consensus 168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgi--lp~~~~G 245 (334)
T 2p9w_A 168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKI--VTVPVGN 245 (334)
T ss_dssp SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEE--EEEEETT
T ss_pred CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccc--cccccCC
Confidence 65422 11 1 122367999999999999988899999999874311012121 21 1111112 1112467
Q ss_pred cE-EEEecCCCcEEEEecCCC
Q 042434 452 TF-IASGSENSQIYIWNRRNS 471 (517)
Q Consensus 452 ~~-l~~~~~dg~i~iwd~~~~ 471 (517)
+. +++.+..+.+.+.+....
T Consensus 246 ~vllV~~~~~~~~~l~S~DgW 266 (334)
T 2p9w_A 246 ESVLVGARAPYAISFRSWDNW 266 (334)
T ss_dssp EEEEEEEETTEEEEEECSSTT
T ss_pred EEEEEEcCCCCEEEEECCCCc
Confidence 76 455555666666655443
No 295
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.16 E-value=0.002 Score=60.06 Aligned_cols=225 Identities=12% Similarity=0.070 Sum_probs=119.1
Q ss_pred CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE--EEeC---CCCCceEEEEEeCC---CCeEEEeeCCC----ceeE
Q 042434 268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK--HTFG---DHGFIVSSCAWFPD---SKRLVCGSSDT----EKGI 335 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~---~~~~~v~~i~~~~~---~~~l~~~~~d~----~v~i 335 (517)
.....++|.|+|+++++ ..+|.|.+++ +++.. ..+. ........++++|+ +..|+++.... .-+|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45679999999985554 5679999998 45422 2221 22456789999998 55555544321 1237
Q ss_pred EEEeCCCCee----Ee---ee--CcCCCceEEEEEccCCCEEEEEeC-------------CCcEEEEECCCc--------
Q 042434 336 FMCDCDGNEI----KA---WR--GTRIPKVLDLAVTPDGENLISVLS-------------DKDIRILNLGTY-------- 385 (517)
Q Consensus 336 ~~~~~~~~~~----~~---~~--~~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~-------- 385 (517)
+.++..+..+ .. +. .........++|.|+|...++.+. .|.|..++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 7777664311 11 21 111123468999999976665432 256777766541
Q ss_pred -----e-EEeeccCCCeeEEEEcC-CCCEEEEEeCCCe--------EEEEEcCC--CC-------------ccceEEeCc
Q 042434 386 -----A-ERVISEEHPITSLSVSV-DCKNFIVNLNSQE--------IHMWDVAG--KW-------------EKPFKYTGH 435 (517)
Q Consensus 386 -----~-~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~--------i~~~d~~~--~~-------------~~~~~~~~~ 435 (517)
. ............++|+| ++..+++-...+. |.+..... ++ .....+..+
T Consensus 188 ~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~ 267 (352)
T 2ism_A 188 GRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG 267 (352)
T ss_dssp TCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred CCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC
Confidence 1 11111223467889999 5665554443333 33332111 00 011111111
Q ss_pred ccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCce------eEEecCCCCCeeEEEecCCCCcEEEEee
Q 042434 436 SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP------IEILSGHSMTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 436 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~h~~~v~~v~~~~~~~~~l~s~~ 501 (517)
.. ...+.+ .+|.++++.-..+.|...++..... ...+-.-...+.++++.|+| .++++..
T Consensus 268 ~a----p~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG-~lyv~~~ 333 (352)
T 2ism_A 268 FP----PGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDG-ALYVTTS 333 (352)
T ss_dssp CC----EEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTS-CEEEEEC
T ss_pred CC----CcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCC-cEEEEEe
Confidence 11 111111 3667666666667787777654321 12221223678999999999 5555543
No 296
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.15 E-value=0.009 Score=60.24 Aligned_cols=231 Identities=10% Similarity=0.014 Sum_probs=144.7
Q ss_pred EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEE-EeCCCeEEEEECCCCcEEEEeCCCCCceEE
Q 042434 236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLT-CGNAEVLKLWDVETGICKHTFGDHGFIVSS 314 (517)
Q Consensus 236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 314 (517)
+|+.+ ....|+..++..... .....+ ..-..+..++|++.+..|+. -..++.|..+++........+.........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~-~~~~~~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNN-NVAIPL-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTC-EEECCC-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred EEEEE-eCCcEEEEECCCCCc-ceEEEc-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 44444 446788888865432 111111 12346889999997666654 455789999998765544444333345678
Q ss_pred EEEeCCCCeEEEeeC-CCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC--CCcEEEEECCCce-EEee
Q 042434 315 CAWFPDSKRLVCGSS-DTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS--DKDIRILNLGTYA-ERVI 390 (517)
Q Consensus 315 i~~~~~~~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~-~~~~ 390 (517)
+++.+.+..|+.+.. .+. |...+.++.....+..........+++.|....|+.... .+.|...++.... ....
T Consensus 85 lAvD~~~~~LY~tD~~~~~--I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~ 162 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNR--IEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV 162 (628)
T ss_dssp EEEETTTTEEEEEETTTTE--EEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred EEEEeCCCEEEEEECCCCE--EEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE
Confidence 889877666655544 444 888888876555444344456789999996666666553 5688888887655 3334
Q ss_pred ccCCCeeEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 391 SEEHPITSLSVSVDCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 391 ~~~~~i~~~~~s~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
........++++++++.|+.+ ...+.|..+|+.+... ..+.........+.. . .+..+++-...+.|...|..
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav---~-~~~ly~tD~~~~~I~~~dk~ 236 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQ---Y-QDYIYWTDWSRRSIERANKT 236 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEE---E-TTEEEEEETTTTEEEEEETT
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEE---E-CCEEEEecCCCCEEEEEECC
Confidence 455678899999976666555 4577899999976533 222222222222322 2 24555555567889999977
Q ss_pred CCceeEEe
Q 042434 470 NSKPIEIL 477 (517)
Q Consensus 470 ~~~~~~~~ 477 (517)
+|+....+
T Consensus 237 tg~~~~~l 244 (628)
T 4a0p_A 237 SGQNRTII 244 (628)
T ss_dssp TCCSCEEE
T ss_pred CCCceEEE
Confidence 77644443
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=0.00038 Score=67.17 Aligned_cols=195 Identities=7% Similarity=0.046 Sum_probs=108.9
Q ss_pred cEEEEEECC-CCCEEEEe-eCCCcEEEEEecCCCeeeEEEEe-ccCCCCEEEEEE-------CCCCCeEEEEeCCC----
Q 042434 224 EVWFVQFSN-NGEYLASS-SSDCSAIIWKVLEDSKLTLKHTL-RSHQNPVSFVAW-------SPDDTKLLTCGNAE---- 289 (517)
Q Consensus 224 ~v~~~~~s~-~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~-~~h~~~v~~l~~-------s~~~~~l~s~~~dg---- 289 (517)
....++|+| ++..|+.+ ...+.|++.|...+ .+..+... .........++| ++++..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 467899998 34444444 43456777777543 22222111 112235899999 99998777665543
Q ss_pred ---eEEEEECCC-CcEE-----EEeCCCCCceEEEEEeCCCCe-EEEeeCCCceeEEEEeCC-------CCee-------
Q 042434 290 ---VLKLWDVET-GICK-----HTFGDHGFIVSSCAWFPDSKR-LVCGSSDTEKGIFMCDCD-------GNEI------- 345 (517)
Q Consensus 290 ---~i~iwd~~~-~~~~-----~~~~~~~~~v~~i~~~~~~~~-l~~~~~d~~v~i~~~~~~-------~~~~------- 345 (517)
.|.+.+... +... ..+.. ......++.+|++.. +++-..++. |+.++.. +...
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~--V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQ--VFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTE--EEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCE--EEEEecccccccccCceeecccccc
Confidence 255665333 2211 12211 123356788995555 445555666 8888875 3322
Q ss_pred ------EeeeCcCCCceEEEEEccCCCEEEEE-eCCCcEEEEECC--CceE----Eeecc---C------------CCee
Q 042434 346 ------KAWRGTRIPKVLDLAVTPDGENLISV-LSDKDIRILNLG--TYAE----RVISE---E------------HPIT 397 (517)
Q Consensus 346 ------~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~--~~~~----~~~~~---~------------~~i~ 397 (517)
.............++|+|+|+.++.+ +..+.|+.++.. .... ..... . ....
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 11222223356789999999965554 456788886643 2211 11111 0 1233
Q ss_pred -EEEEc-------CCCCEEEEEeCCCeEEEEEc
Q 042434 398 -SLSVS-------VDCKNFIVNLNSQEIHMWDV 422 (517)
Q Consensus 398 -~~~~s-------~~~~~l~~~~~d~~i~~~d~ 422 (517)
.++.. +++..+++-+.+++|+.++.
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 45554 45666666677889999984
No 298
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.13 E-value=0.0064 Score=65.72 Aligned_cols=282 Identities=16% Similarity=0.105 Sum_probs=152.9
Q ss_pred cCcEEEEEECCC------CCEEEEeeC-CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEEC--CCCCeEEEEeCCCeEE
Q 042434 222 KNEVWFVQFSNN------GEYLASSSS-DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWS--PDDTKLLTCGNAEVLK 292 (517)
Q Consensus 222 ~~~v~~~~~s~~------~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~~~l~s~~~dg~i~ 292 (517)
.+.|.|+++.|. ++++|.|.. |++|+|+++.+-... ....+.. .....++.+. ....+|..|-.||.+.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~-~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~ 630 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL-HKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALF 630 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE-EEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE-EEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEE
Confidence 568999999863 479999996 999999999643322 1222321 2234444332 2346788999999876
Q ss_pred EEEC--CCCcEEEE--eCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEE-EEEccC--C
Q 042434 293 LWDV--ETGICKHT--FGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLD-LAVTPD--G 365 (517)
Q Consensus 293 iwd~--~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~--~ 365 (517)
-+.+ .+|..... ..-...++.-..+...+..-+.+..+.. .+.+...+.... ..-....+.. ..|+.. .
T Consensus 631 ~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp--~liy~~~~~l~~--s~l~~~~v~~~~~F~se~~~ 706 (1158)
T 3ei3_A 631 YFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRP--TVIYSSNHKLVF--SNVNLKEVNYMCPLNSDGYP 706 (1158)
T ss_dssp EEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSC--EEEEESSSSEEE--EEBSSSCCCEEEEECCSSST
T ss_pred EEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCC--EEEEEcCCceEE--eccChHHhceEeccCcccCC
Confidence 5544 45544321 1122345554445444444333344444 334443433221 1111112322 334332 2
Q ss_pred CEEEEEeCCCcEEEEECCCce---EEeeccCCCeeEEEEcCCCCEEEEEeCC----------------------------
Q 042434 366 ENLISVLSDKDIRILNLGTYA---ERVISEEHPITSLSVSVDCKNFIVNLNS---------------------------- 414 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------------------------- 414 (517)
.-++.. .++.++|..+.... .....-...+..++++|+.+.++++..+
T Consensus 707 ~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1158)
T 3ei3_A 707 DSLALA-NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS 785 (1158)
T ss_dssp TEEEEE-CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred CcEEEE-cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence 344443 34568888775433 4555566788899999988776655421
Q ss_pred ---------------------CeEEEEEcCCCCccceEEeCc-ccCceEEEeecCCCC-CcEEEEec----------CCC
Q 042434 415 ---------------------QEIHMWDVAGKWEKPFKYTGH-SQNKYVIRSCFGGLD-GTFIASGS----------ENS 461 (517)
Q Consensus 415 ---------------------~~i~~~d~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~-~~~l~~~~----------~dg 461 (517)
+.|+++|..+. .....+.-. ......+..+.+..+ ..++++|+ ..|
T Consensus 786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~-~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~G 864 (1158)
T 3ei3_A 786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTF-EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQG 864 (1158)
T ss_dssp CCCC----------CCCEEEEEEEEEEETTTC-CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCE
T ss_pred cccccccccCchhhcCCceeeEEEEEEeCCCC-eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCce
Confidence 12445554332 222222211 112233444444332 46888876 358
Q ss_pred cEEEEecCCCceeEEec-CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCCCCCC
Q 042434 462 QIYIWNRRNSKPIEILS-GHSMTVNCVSWNPKRPKMLASASDDHTIRIWGPCQSS 515 (517)
Q Consensus 462 ~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 515 (517)
.|++|++..+++..... ...++|++++--. | +++++. ..+|++|++...+
T Consensus 865 ri~vf~v~~~kL~lv~~~~v~g~v~al~~~~-g-~Lla~i--g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 865 RIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN-G-KLLASI--NSTVRLYEWTTEK 915 (1158)
T ss_dssp EEEEEEEETTEEEEEEEEEESSCEEEEEEET-T-EEEEEE--TTEEEEEEECTTS
T ss_pred EEEEEEEECCEEEEEEEEEcCCcCEEEeeeC-C-EEEEEc--CCEEEEEECCCCc
Confidence 89999987554322221 2368899987553 4 455544 4689999987654
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.13 E-value=0.0011 Score=60.51 Aligned_cols=197 Identities=14% Similarity=0.222 Sum_probs=123.6
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCC----CCe--EEEeeC----CCceeEEEEeCCCCeeEe
Q 042434 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPD----SKR--LVCGSS----DTEKGIFMCDCDGNEIKA 347 (517)
Q Consensus 278 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~----~~~--l~~~~~----d~~v~i~~~~~~~~~~~~ 347 (517)
...+++.....+-+.+||+ +|+.+..+.. +.+..+..-|+ |+. ++.++. ++++.++..|.....+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3456776777889999999 8998888753 45666666653 222 333333 356555555656666655
Q ss_pred eeC------cCCCceEEEEE--ccC-CC-EEEEEeCCCcEEEEECCC---c----e-EEeeccCCCeeEEEEcCCCCEEE
Q 042434 348 WRG------TRIPKVLDLAV--TPD-GE-NLISVLSDKDIRILNLGT---Y----A-ERVISEEHPITSLSVSVDCKNFI 409 (517)
Q Consensus 348 ~~~------~~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~---~----~-~~~~~~~~~i~~~~~s~~~~~l~ 409 (517)
... .....+..+|+ +|. +. ++++...+|.+..|++.. + + ...+.....+..+...+....|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 522 11135666777 774 44 688888899999998832 2 1 34455667889999999999999
Q ss_pred EEeCCCeEEEEEcCCCC----ccceEEe-Ccc-cCceEEEeecCCCCCc-EEEEec-CCCcEEEEecC-CCceeEEec
Q 042434 410 VNLNSQEIHMWDVAGKW----EKPFKYT-GHS-QNKYVIRSCFGGLDGT-FIASGS-ENSQIYIWNRR-NSKPIEILS 478 (517)
Q Consensus 410 ~~~~d~~i~~~d~~~~~----~~~~~~~-~~~-~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~-~~~~~~~~~ 478 (517)
++-.+..|..|+..... ..+..+. ++- .....+.... .++++ ||++++ .+.+..+||.. +.+.+..+.
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~-~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY-AADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE-CGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 99999888777754221 2222221 111 1223333221 34544 555555 56799999996 677777774
No 300
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=98.12 E-value=2.1e-06 Score=59.74 Aligned_cols=36 Identities=28% Similarity=0.228 Sum_probs=33.2
Q ss_pred CCchHHHHHHHHHHHhhcChHHHHHHHhhhcCeeec
Q 042434 13 LIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYK 48 (517)
Q Consensus 13 ~~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~ 48 (517)
.++.+||+.||++||+|.||.+||.+|++||++.-.
T Consensus 2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~ 37 (90)
T 2xtc_A 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQS 37 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGS
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCcc
Confidence 578999999999999999999999999999998643
No 301
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.08 E-value=0.0069 Score=56.41 Aligned_cols=231 Identities=13% Similarity=0.039 Sum_probs=124.0
Q ss_pred CCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc-EEEEeC---CCCCceEEEEEeCC---CCeEEEeeCC--Cc----e
Q 042434 267 QNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI-CKHTFG---DHGFIVSSCAWFPD---SKRLVCGSSD--TE----K 333 (517)
Q Consensus 267 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~i~~~~~---~~~l~~~~~d--~~----v 333 (517)
-.....++|.|+|++++ +..+|.|.+++ .+++ .+..+. ........++++|+ +..|+++... +. -
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999997555 46669999997 4554 222221 22356789999997 5555544331 11 3
Q ss_pred eEEEEeCCCC--e---eE----eeeCcCCCceEEEEEccCCCEEEEEeC-------------CCcEEEEECCCc------
Q 042434 334 GIFMCDCDGN--E---IK----AWRGTRIPKVLDLAVTPDGENLISVLS-------------DKDIRILNLGTY------ 385 (517)
Q Consensus 334 ~i~~~~~~~~--~---~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~------ 385 (517)
+|..++..+. . .. .+..........+.|.|||.+.++.+. .|.|..++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 3777776543 1 11 122111123567999999987666432 246666666542
Q ss_pred --e-EEeeccCCCeeEEEEcC-CCCEEEEEeCCC---eEEEEEcCC--CC-------------ccceEE-eCcccCceEE
Q 042434 386 --A-ERVISEEHPITSLSVSV-DCKNFIVNLNSQ---EIHMWDVAG--KW-------------EKPFKY-TGHSQNKYVI 442 (517)
Q Consensus 386 --~-~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~---~i~~~d~~~--~~-------------~~~~~~-~~~~~~~~~i 442 (517)
. ............++|+| ++..+++-...+ .|.+...-. ++ .....+ ..+. ....+
T Consensus 186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~-ap~G~ 264 (354)
T 3a9g_A 186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETW-APSGA 264 (354)
T ss_dssp STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCC-CEEEE
T ss_pred CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCc-CCcce
Confidence 1 11112223467899999 565555443322 243332111 00 011111 1111 11111
Q ss_pred Eee---cC-CCCCcEEEEecCCCcEEEEecCCC-cee--EEe-cCCCCCeeEEEecCCCCcEEEEee
Q 042434 443 RSC---FG-GLDGTFIASGSENSQIYIWNRRNS-KPI--EIL-SGHSMTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 443 ~~~---~~-s~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~-~~h~~~v~~v~~~~~~~~~l~s~~ 501 (517)
... .| ..+|.++++.-..+.|...++... +.. ..+ .+....+.++++.|+| .++++..
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG-~lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDG-GILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTS-CEEEEEC
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCC-cEEEEEe
Confidence 110 00 246777777777788888888753 322 222 2334678999999999 5666654
No 302
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.06 E-value=3.6e-05 Score=78.96 Aligned_cols=235 Identities=9% Similarity=-0.016 Sum_probs=134.0
Q ss_pred CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEe-CCCeEEEEECCC----CcEEEEeCCCCCceEEEEE
Q 042434 243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCG-NAEVLKLWDVET----GICKHTFGDHGFIVSSCAW 317 (517)
Q Consensus 243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~----~~~~~~~~~~~~~v~~i~~ 317 (517)
.+.|+..++..... .. +......+..++|++.+..|+.+. ..+.|..+++.+ ......+.........+++
T Consensus 385 ~~~I~~id~~~~~~---~~-~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav 460 (699)
T 1n7d_A 385 RHEVRKMTLDRSEY---TS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 460 (699)
T ss_dssp TTC-CEECTTSCCE---EC-CSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred ccceEEEeCCCCcc---ee-eeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence 35677777654321 11 222234567889998776666554 457899999875 2222222122223456788
Q ss_pred eCCCCeEEEe-eCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC--CCcEEEEECCCceEE-e-ecc
Q 042434 318 FPDSKRLVCG-SSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS--DKDIRILNLGTYAER-V-ISE 392 (517)
Q Consensus 318 ~~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~-~-~~~ 392 (517)
.+.+..|+.+ ...+. |++++..+.....+..........+++.|.+..|+.+.. .+.|.++++...... . ...
T Consensus 461 D~~~g~LY~tD~~~~~--I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~ 538 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGT--VSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 538 (699)
T ss_dssp CCSSSBCEECCTTTSC--EEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSS
T ss_pred EeeCCcEEEEeccCCe--EEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCC
Confidence 7554444443 44555 888888877665554433345678899997665555443 268888887654422 2 223
Q ss_pred CCCeeEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCccceEEeCc---ccCceEEEeecCCCCCcEEEEecCCCcEEEEec
Q 042434 393 EHPITSLSVSVDCKNFI-VNLNSQEIHMWDVAGKWEKPFKYTGH---SQNKYVIRSCFGGLDGTFIASGSENSQIYIWNR 468 (517)
Q Consensus 393 ~~~i~~~~~s~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 468 (517)
......++++|++..|+ +-+..+.|..+++.+... ..+... ......+.. .. +.++++....+.|..++.
T Consensus 539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~--~~~~~~~~~~~~P~glav---d~-~~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAV---FE-DKVFWTDIINEAIFSANR 612 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC--EEECCCSSSCSSCCCCEE---ET-TEEEEECSTTTCEEEEET
T ss_pred CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce--EEEEecCCcCCCceEeEE---EC-CEEEEEeCCCCeEEEEEc
Confidence 34577899999765554 445677899999865322 222111 111111111 12 345556666789999998
Q ss_pred CCCceeEEecCCCCCeeEEEe
Q 042434 469 RNSKPIEILSGHSMTVNCVSW 489 (517)
Q Consensus 469 ~~~~~~~~~~~h~~~v~~v~~ 489 (517)
.+|+.+..+........+|++
T Consensus 613 ~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 613 LTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp TTEEEEECCCTTCSSCCCCCB
T ss_pred cCCCceEEeecCCCCCcEEEE
Confidence 888877776543333444443
No 303
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.04 E-value=0.015 Score=58.55 Aligned_cols=284 Identities=8% Similarity=-0.034 Sum_probs=151.5
Q ss_pred CcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC--CCeEEEEECCCC
Q 042434 223 NEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN--AEVLKLWDVETG 299 (517)
Q Consensus 223 ~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~ 299 (517)
.....+++.+.+. +.++-...+.|.+.+...... .. .....-.....|++.|.+..|+.+.. .+.|...++...
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~ 160 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KV--LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS 160 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE--EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EE--EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC
Confidence 5788999998554 555555678899998864322 11 12233455678999997666655543 456777776544
Q ss_pred cEEEEeCCCCCceEEEEEeCCCCeEEEeeCC-CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEE
Q 042434 300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSD-TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIR 378 (517)
Q Consensus 300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 378 (517)
.........-.....+++.+++..|+.+... +. |+.++..+.....+..........+++..+ ..+++-...+.|.
T Consensus 161 ~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~--I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~ 237 (619)
T 3s94_A 161 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF--IHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSIL 237 (619)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCC--EEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEE
T ss_pred ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCe--EEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEE
Confidence 3333333344567899999987777666543 44 888898876554443322223456677655 3444444567888
Q ss_pred EEECCCce-E-EeeccCCCee-------------------------EEEE-----------cC-------CC-------C
Q 042434 379 ILNLGTYA-E-RVISEEHPIT-------------------------SLSV-----------SV-------DC-------K 406 (517)
Q Consensus 379 i~d~~~~~-~-~~~~~~~~i~-------------------------~~~~-----------s~-------~~-------~ 406 (517)
..|..+++ . .......... .+++ .| ++ .
T Consensus 238 ~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~ 317 (619)
T 3s94_A 238 ACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGAT 317 (619)
T ss_dssp EEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCS
T ss_pred EEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCc
Confidence 88876553 1 1110000001 1111 11 11 1
Q ss_pred EEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC-CCcEEEEecCCCcEEEEecCCCceeEEecCCCCCee
Q 042434 407 NFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL-DGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVN 485 (517)
Q Consensus 407 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 485 (517)
.++.-+..+.|+..++.........+.. ..-.. ...+.+.+ ++.++++-...+.|+.++.........+...-....
T Consensus 318 ~~Ll~~~~~~i~~i~l~~~~~~~~~~~~-~~l~~-~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~ 395 (619)
T 3s94_A 318 ELLLLARRTDLRRISLDTPDFTDIVLQL-EDIRH-AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPD 395 (619)
T ss_dssp EEEEEEESSCEEEEESSSTTCCCEECCC-SCCSS-EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred eEEEEEcccceEEEecCCCccceeEEec-cccCc-cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcC
Confidence 1222223344555555433111111110 01011 12233344 455555555677888888765443333333335677
Q ss_pred EEEecCCCCcEEEEeeCCCcEEEeCCCCC
Q 042434 486 CVSWNPKRPKMLASASDDHTIRIWGPCQS 514 (517)
Q Consensus 486 ~v~~~~~~~~~l~s~~~dg~v~iw~~~~~ 514 (517)
++++.+.+.+++++-+..+.|.+.++...
T Consensus 396 GlAvD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 396 GIAVDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence 89998755467777667778888876643
No 304
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.01 E-value=0.00097 Score=60.74 Aligned_cols=226 Identities=14% Similarity=0.116 Sum_probs=116.4
Q ss_pred CCCeEEEEe-CC-----CeEEEEECCCCcEEEEeC--CCCCceEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCCCe--
Q 042434 278 DDTKLLTCG-NA-----EVLKLWDVETGICKHTFG--DHGFIVSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDGNE-- 344 (517)
Q Consensus 278 ~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~~~-- 344 (517)
++..++.|+ .+ ..+.+||+.+++-...-. ........+ ..++..++.|+.++. -.++.+|.....
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV--SLHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEE--EECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445666666 33 368899988776433211 111112222 235777788876532 238899987655
Q ss_pred -eEeeeCcCCCceEEEEEccCCCEEEEEeCC-----CcEEEEECCCce-EEee--ccCCCeeEEEEcCCCCEEEEEeCC-
Q 042434 345 -IKAWRGTRIPKVLDLAVTPDGENLISVLSD-----KDIRILNLGTYA-ERVI--SEEHPITSLSVSVDCKNFIVNLNS- 414 (517)
Q Consensus 345 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~-~~~~--~~~~~i~~~~~s~~~~~l~~~~~d- 414 (517)
-..............+...+++.++.|+.+ ..+.+||+.+.+ .... .....-.+++ ..+++.++.|+.+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~ 170 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLV-VASGVIYCLGGYDG 170 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE-EETTEEEEECCBCS
T ss_pred eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEE-EECCEEEEECCCCC
Confidence 333322221111111222366677777654 368899998876 2211 1111112222 2266677777654
Q ss_pred ----CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCCCceeEE--ecCCCC
Q 042434 415 ----QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNSKPIEI--LSGHSM 482 (517)
Q Consensus 415 ----~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~h~~ 482 (517)
..+..||+.+. +...... ........++ ..++++++.|+.+ ..+.+||..+.+-... +.....
T Consensus 171 ~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 245 (301)
T 2vpj_A 171 LNILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVA--LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245 (301)
T ss_dssp SCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CcccceEEEEeCCCCcEEeCCCC---CcccccceEE--EECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence 46888998654 2211111 1111111111 1267788888764 4689999987754332 221112
Q ss_pred CeeEEEecCCCCcEEEEeeCC-----CcEEEeCCCCC
Q 042434 483 TVNCVSWNPKRPKMLASASDD-----HTIRIWGPCQS 514 (517)
Q Consensus 483 ~v~~v~~~~~~~~~l~s~~~d-----g~v~iw~~~~~ 514 (517)
....+.+ ++ .+++.||.+ ..|.+||+.+.
T Consensus 246 ~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 246 YVGATVL--RG-RLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SCEEEEE--TT-EEEEECCBCSSSBEEEEEEEETTTT
T ss_pred ceeEEEE--CC-EEEEEcCcCCCcccccEEEEcCCCC
Confidence 2222222 45 678888765 35778887654
No 305
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.96 E-value=0.0022 Score=58.40 Aligned_cols=225 Identities=9% Similarity=0.086 Sum_probs=115.7
Q ss_pred CCeEEEEeCC----CeEEEEECCCCcEEEEe--CCCCCceEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCCCeeEeee
Q 042434 279 DTKLLTCGNA----EVLKLWDVETGICKHTF--GDHGFIVSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDGNEIKAWR 349 (517)
Q Consensus 279 ~~~l~s~~~d----g~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~~~~~~~~ 349 (517)
+..++.|+.+ ..+..||+.+.+-...- ......-..+. -++..++.|+.++. -.++.+|.....-....
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455556543 35888998877643321 11111112222 26777888876532 23888998876654443
Q ss_pred CcCCCceEEEEEccCCCEEEEEeCCC-----cEEEEECCCce-EEeec--cCCCeeEEEEcCCCCEEEEEeC-------C
Q 042434 350 GTRIPKVLDLAVTPDGENLISVLSDK-----DIRILNLGTYA-ERVIS--EEHPITSLSVSVDCKNFIVNLN-------S 414 (517)
Q Consensus 350 ~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~-~~~~~--~~~~i~~~~~s~~~~~l~~~~~-------d 414 (517)
..........+...++..++.|+.++ .+.+||+.+.. ..... ....-.+++. .+++.++.|+. .
T Consensus 94 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~ 172 (302)
T 2xn4_A 94 NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCL 172 (302)
T ss_dssp CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEEC
T ss_pred CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccc
Confidence 32222111112223667777777553 57889988876 22211 1111112222 25566666654 2
Q ss_pred CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCCCceeEE--ecCCCCCeeE
Q 042434 415 QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNSKPIEI--LSGHSMTVNC 486 (517)
Q Consensus 415 ~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~ 486 (517)
..+..||+.+. +....... .......++ ..++.+++.|+.+ ..+.+||..+.+-... +.........
T Consensus 173 ~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~ 247 (302)
T 2xn4_A 173 STVECYNATTNEWTYIAEMS---TRRSGAGVG--VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV 247 (302)
T ss_dssp CCEEEEETTTTEEEEECCCS---SCCBSCEEE--EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred cEEEEEeCCCCcEEECCCCc---cccccccEE--EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeE
Confidence 45888998654 22221111 111111111 1267788888765 3689999987653322 2211111122
Q ss_pred EEecCCCCcEEEEeeCCC-----cEEEeCCCCC
Q 042434 487 VSWNPKRPKMLASASDDH-----TIRIWGPCQS 514 (517)
Q Consensus 487 v~~~~~~~~~l~s~~~dg-----~v~iw~~~~~ 514 (517)
+.+ ++ .+++.||.++ .+.+||+.+.
T Consensus 248 ~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 248 CAV--NG-LLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EEE--TT-EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEE--CC-EEEEECCcCCCcccccEEEEcCCCC
Confidence 222 45 6888887654 4788888754
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.94 E-value=0.0012 Score=60.17 Aligned_cols=230 Identities=10% Similarity=0.046 Sum_probs=118.0
Q ss_pred CCCEEEEee-CC-----CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC-----CeEEEEECCCCc-
Q 042434 233 NGEYLASSS-SD-----CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA-----EVLKLWDVETGI- 300 (517)
Q Consensus 233 ~~~~l~t~~-~d-----g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~- 300 (517)
++.+++.|+ .+ ..+.+||..+. .+.....+.........+. .++..++.|+.+ ..+.+||..+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQ-EWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTT-EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCC-eEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 445666666 32 35778887643 2322222221111222222 256777777765 368999998876
Q ss_pred --EEEEe--CCCCCceEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC
Q 042434 301 --CKHTF--GDHGFIVSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS 373 (517)
Q Consensus 301 --~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 373 (517)
-...- ........++.+ ++..++.|+.++. -.++.+|..+..-..............+...+++.++.|+.
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 168 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY 168 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCB
T ss_pred CeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCC
Confidence 33322 111222222222 6777888876542 24888998876544433222111111222236677777765
Q ss_pred C-----CcEEEEECCCce-EEeeccCC-CeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCC-CccceEEeCcccCce
Q 042434 374 D-----KDIRILNLGTYA-ERVISEEH-PITSLSVSVDCKNFIVNLNS-----QEIHMWDVAGK-WEKPFKYTGHSQNKY 440 (517)
Q Consensus 374 d-----g~i~i~d~~~~~-~~~~~~~~-~i~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~-~~~~~~~~~~~~~~~ 440 (517)
+ ..+.+||+.+.. ........ .....+...+++.++.|+.+ ..+.+||+.+. +...... .....
T Consensus 169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~r~ 245 (301)
T 2vpj_A 169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM---TTPRC 245 (301)
T ss_dssp CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC---SSCCB
T ss_pred CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC---CCccc
Confidence 4 468999998877 22211111 11111222256667777654 46889998654 2222111 11111
Q ss_pred EEEeecCCCCCcEEEEecCC-----CcEEEEecCCCc
Q 042434 441 VIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNSK 472 (517)
Q Consensus 441 ~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 472 (517)
...++ ..++++++.|+.+ ..+.+||..+.+
T Consensus 246 ~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 246 YVGAT--VLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SCEEE--EETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred ceeEE--EECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 11111 1267777888765 357888887664
No 307
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.93 E-value=0.01 Score=53.11 Aligned_cols=253 Identities=9% Similarity=0.115 Sum_probs=150.9
Q ss_pred CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC
Q 042434 243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK 322 (517)
Q Consensus 243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 322 (517)
+..|.|.|+.++... .+.-..-+ +.-.+|..+.+|.-. ..++.++|+++...++.+.- ...|.-=.|-.+ +
T Consensus 48 ~~~VvIiDl~n~~~~--~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~ 118 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNP--IRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-N 118 (365)
T ss_dssp EEEEEEEETTSTTSC--EEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSS-S
T ss_pred CCEEEEEECCCCCCc--cccccccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCC-C
Confidence 347888898766543 22222222 233488888777655 67999999999998888754 456666667644 3
Q ss_pred eEEEeeCCCceeEEEEeCCC--CeeEeeeCcC---CCceEEEEEccCCCEEEEEeC-------CCcEEEEECCCceEEee
Q 042434 323 RLVCGSSDTEKGIFMCDCDG--NEIKAWRGTR---IPKVLDLAVTPDGENLISVLS-------DKDIRILNLGTYAERVI 390 (517)
Q Consensus 323 ~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~ 390 (517)
.|+..+... ||.|+..+ .+.+.+..+. ...|..-..+++.++++..+- .|.+.+|..+......+
T Consensus 119 ~L~lVT~ta---VyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i 195 (365)
T 2xzh_A 119 TVALVTDNA---VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI 195 (365)
T ss_dssp EEEEEESSE---EEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEE
T ss_pred eEEEEcCCc---EEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccccee
Confidence 454444443 99999875 4444444332 346888888999998765543 36788998887763332
Q ss_pred -ccCCCeeEEEEcCCC-----CEEEEEeC---CCeEEEEEcCCC--Cccce--E-----EeCcccCceEEEeecCCCCCc
Q 042434 391 -SEEHPITSLSVSVDC-----KNFIVNLN---SQEIHMWDVAGK--WEKPF--K-----YTGHSQNKYVIRSCFGGLDGT 452 (517)
Q Consensus 391 -~~~~~i~~~~~s~~~-----~~l~~~~~---d~~i~~~d~~~~--~~~~~--~-----~~~~~~~~~~i~~~~~s~~~~ 452 (517)
+|.... ..+-.+| ..++.+.. .+.+++.++... ..... + +.......+.+.... ++.-.
T Consensus 196 eGhaa~F--~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqv-s~kyg 272 (365)
T 2xzh_A 196 EGHAASF--AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-SEKHD 272 (365)
T ss_dssp CCSEEEE--EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEE-ETTTT
T ss_pred eeeeeee--EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEe-cccCC
Confidence 222222 2222222 12333332 258999998432 11111 0 112222344444333 55666
Q ss_pred EEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 453 FIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 453 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
.++.-+.-|.|++||+.+|.++..-+-....|..-+-+... .=++.....|.|.--.+
T Consensus 273 viyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~-~Gi~~Vnr~GqVl~v~v 330 (365)
T 2xzh_A 273 VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT-AGIIGVNRKGQVLSVCV 330 (365)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGG-TEEEEEETTCEEEEEEE
T ss_pred EEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCC-CcEEEEcCCCEEEEEEE
Confidence 78888899999999999999988776556666555554332 12445556666654433
No 308
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=97.91 E-value=4.6e-06 Score=57.51 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHHHHHHHHHcCChHHHHHHhh
Q 042434 16 KYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQILNGDWDGCIDTLI 72 (517)
Q Consensus 16 ~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~~~~i~~g~w~~~~~~l~ 72 (517)
++|+.+-|++||..+||.+++.+|.+|.+++.+++... -...+++.+|..|+.+-+
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~-ky~gLLEKKWTSViRLQK 65 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDK-KYAGLLEKKWTSVIRLQK 65 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHH-HHTTHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhh-hhhhhhhhhHHHHHHHHH
Confidence 67999999999999999999999999999987744333 456678899998876643
No 309
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.85 E-value=0.0097 Score=53.86 Aligned_cols=213 Identities=10% Similarity=0.014 Sum_probs=123.7
Q ss_pred EEECCCCCeEEEEeCC--------------CeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEee--CCCceeEE
Q 042434 273 VAWSPDDTKLLTCGNA--------------EVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGS--SDTEKGIF 336 (517)
Q Consensus 273 l~~s~~~~~l~s~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~--~d~~v~i~ 336 (517)
--+++++.+|+-+... ..|+..++..++....... . +..|+++++.|+... .++.-.|+
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~-~----~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD-P----CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS-C----EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC-C----ccEEEEeCCEEEEEeecCCCCceEE
Confidence 3457888888876543 3677778776654333221 1 236788899988876 45556699
Q ss_pred EEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-CCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEeCC-
Q 042434 337 MCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-DKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNLNS- 414 (517)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d- 414 (517)
..+.++.....+..... ..++++++.|+-.+. ...|.+.++.......... .... ..+.|++++|+-....
T Consensus 133 ~~~~dGs~~~~lt~~~~-----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~-~~~~-~~~~P~g~~iy~t~~~~ 205 (302)
T 3s25_A 133 RIRIDGEEKKKIKNHYL-----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD-CNCY-KPVVLDDTNVYYMDVNR 205 (302)
T ss_dssp EEETTSCCCEEEESSCC-----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC-SCEE-EEEEEETTEEEEEEGGG
T ss_pred EEECCCCCeEEEeCCCc-----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC-CCcc-ceeeecCCEEEEEEcCC
Confidence 99998766665554432 346778888876655 6789999988766333322 2332 3466999988876543
Q ss_pred -CeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEec--CCCcEEEEecCCCceeEEecCCCCCeeEEEecC
Q 042434 415 -QEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS--ENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNP 491 (517)
Q Consensus 415 -~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~ 491 (517)
..|..-++.+.. ...+.... +. +++|++.+|+-++ ..+.|..-++.... ...+.. +.+..+..
T Consensus 206 ~~~I~~~~ldG~~--~~~Lt~~~-----~~--~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~-r~~l~~--~~~~~i~i-- 271 (302)
T 3s25_A 206 DNAIVHVNINNPN--PVVLTEAN-----IE--HYNVYGSLIFYQRGGDNPALCVVKNDGTG-FKELAK--GEFCNINV-- 271 (302)
T ss_dssp TTEEEEECSSSCC--CEECSCSC-----EE--EEEEETTEEEEEECSSSCEEEEEETTSCC-CEEEEE--SCEEEEEE--
T ss_pred CcEEEEEECCCCC--eEEEeCCC-----cc--eEEECCCEEEEEECCCCcEEEEEECCCCc-cEEeeC--CccceEEE--
Confidence 367677776542 22222111 11 2467888877653 34567777765333 333321 12444444
Q ss_pred CCCcEEEEeeCCCcEEEeCC
Q 042434 492 KRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 492 ~~~~~l~s~~~dg~v~iw~~ 511 (517)
.+..+..+--..+.|..-++
T Consensus 272 ~~d~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 272 TSQYVYFTDFVSNKEYCTST 291 (302)
T ss_dssp CSSEEEEEETTTCCEEEEES
T ss_pred eCCEEEEEECCCCeEEEEEC
Confidence 44344444434455544443
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.85 E-value=0.0026 Score=58.07 Aligned_cols=224 Identities=11% Similarity=0.055 Sum_probs=116.8
Q ss_pred CeEEEEeC--CCeEEEEECCCCcEEEEeC--CCCCceEEEEEeCCCCeEEEeeCCC--ceeEEEEeCCCCeeEeeeCcCC
Q 042434 280 TKLLTCGN--AEVLKLWDVETGICKHTFG--DHGFIVSSCAWFPDSKRLVCGSSDT--EKGIFMCDCDGNEIKAWRGTRI 353 (517)
Q Consensus 280 ~~l~s~~~--dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~~~~~~ 353 (517)
..++.|+. ...+.+||..+++-...-. ........+. -++..++.|+.+. .-.++.+|.....-........
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555654 3578899998876443211 1112222222 3667778887551 2238889988765544433222
Q ss_pred CceEEEEEccCCCEEEEEeCC------CcEEEEECCCce-EEeec--cCCCeeEEEEcCCCCEEEEEeC---------CC
Q 042434 354 PKVLDLAVTPDGENLISVLSD------KDIRILNLGTYA-ERVIS--EEHPITSLSVSVDCKNFIVNLN---------SQ 415 (517)
Q Consensus 354 ~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~-~~~~~--~~~~i~~~~~s~~~~~l~~~~~---------d~ 415 (517)
......+..-+++.++.|+.+ ..+.+||..+.. ..... ....-.+++. .+++.++.|+. ..
T Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECC
T ss_pred cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccc
Confidence 222222222366777777765 468999998876 22211 1111112222 35666666653 34
Q ss_pred eEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCCCcee--EEecCCCCCeeEE
Q 042434 416 EIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNSKPI--EILSGHSMTVNCV 487 (517)
Q Consensus 416 ~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~--~~~~~h~~~v~~v 487 (517)
.+..||+.+. +...... ......-.++ ..++++++.|+.+ ..+.+||..+.+-. ..+.........+
T Consensus 170 ~~~~yd~~~~~W~~~~~~---p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 244 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPM---IEARKNHGLV--FVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCA 244 (306)
T ss_dssp CEEEEETTTTEEEEECCC---SSCCBSCEEE--EETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEE
T ss_pred eEEEeCCCCCeEEECCCc---cchhhcceEE--EECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEE
Confidence 5888998654 1211111 1111111111 1267777777754 36899998876532 2222222222333
Q ss_pred EecCCCCcEEEEeeCC-----CcEEEeCCCCC
Q 042434 488 SWNPKRPKMLASASDD-----HTIRIWGPCQS 514 (517)
Q Consensus 488 ~~~~~~~~~l~s~~~d-----g~v~iw~~~~~ 514 (517)
.+ ++ .+++.||.+ ..+.+||+.+.
T Consensus 245 ~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 245 AV--GS-IVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EE--TT-EEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EE--CC-EEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 33 45 688888854 45788888764
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.85 E-value=0.0042 Score=56.51 Aligned_cols=229 Identities=11% Similarity=0.094 Sum_probs=116.8
Q ss_pred CCEEEEeeCC----CcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCC-----eEEEEECCCCcEEEE
Q 042434 234 GEYLASSSSD----CSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAE-----VLKLWDVETGICKHT 304 (517)
Q Consensus 234 ~~~l~t~~~d----g~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~ 304 (517)
+.+++.|+.+ ..+.+||..+. .+.....+......-..+.+ ++..++.|+.++ .+.+||..+.+-...
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEE-RWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCC-cEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 3455555543 35778887644 33332222211111122222 567777777553 588999988764432
Q ss_pred eC--CCCCceEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC-----
Q 042434 305 FG--DHGFIVSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD----- 374 (517)
Q Consensus 305 ~~--~~~~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----- 374 (517)
-. ........+. -++..++.|+.++. -.++.+|.....-..............+..-+++.++.|+.+
T Consensus 93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTE
T ss_pred CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCc
Confidence 21 1122222222 26777777876542 237888888765544432222111111222356666666542
Q ss_pred --CcEEEEECCCce-EEeec--cCCCeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCC-CccceEEeCcccCceEEE
Q 042434 375 --KDIRILNLGTYA-ERVIS--EEHPITSLSVSVDCKNFIVNLNS-----QEIHMWDVAGK-WEKPFKYTGHSQNKYVIR 443 (517)
Q Consensus 375 --g~i~i~d~~~~~-~~~~~--~~~~i~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~ 443 (517)
..+.+||+.+.. ..... ....-.+++. -+++.++.|+.+ ..+.+||+.+. +..+.... .......
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~---~~r~~~~ 246 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN---MCRRNAG 246 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS---SCCBSCE
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC---CccccCe
Confidence 458899998876 22211 1111122222 256677777654 36889998654 22221111 1111011
Q ss_pred eecCCCCCcEEEEecCCC-----cEEEEecCCCce
Q 042434 444 SCFGGLDGTFIASGSENS-----QIYIWNRRNSKP 473 (517)
Q Consensus 444 ~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~ 473 (517)
++ ..++++++.|+.++ .+.+||..+.+-
T Consensus 247 ~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 247 VC--AVNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp EE--EETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred EE--EECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 11 13677888887654 489999887653
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.83 E-value=0.0086 Score=54.52 Aligned_cols=227 Identities=12% Similarity=0.097 Sum_probs=117.4
Q ss_pred CEEEEeeC--CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCC----CeEEEEECCCCcEEEEeC--
Q 042434 235 EYLASSSS--DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNA----EVLKLWDVETGICKHTFG-- 306 (517)
Q Consensus 235 ~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~-- 306 (517)
.+++.|+. ...+.+||..++ .+..+..+......-..+.+ ++..++.|+.+ ..+.+||..+++-...-.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDY-SWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTT-EEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCC-CEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 34555654 356888887643 23322222211222222232 56677777755 578899998876443322
Q ss_pred CCCCceEEEEEeCCCCeEEEeeCC-C---ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC---------
Q 042434 307 DHGFIVSSCAWFPDSKRLVCGSSD-T---EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS--------- 373 (517)
Q Consensus 307 ~~~~~v~~i~~~~~~~~l~~~~~d-~---~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--------- 373 (517)
........+.+ +++.++.|+.+ + .-.++.+|.....-..............+...+++.++.|+.
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccc
Confidence 12222222222 67777888765 1 123889998876554443222211111122236666666654
Q ss_pred CCcEEEEECCCce-EEeeccC--CCeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCC-CccceEEeCcccCceEEEe
Q 042434 374 DKDIRILNLGTYA-ERVISEE--HPITSLSVSVDCKNFIVNLNS-----QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRS 444 (517)
Q Consensus 374 dg~i~i~d~~~~~-~~~~~~~--~~i~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~ 444 (517)
-..+.+||+.+.. ....... ..-.++... +++.++.|+.+ ..+.+||+.+. +..+......... ..+
T Consensus 168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---~~~ 243 (306)
T 3ii7_A 168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT---VKC 243 (306)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC---CEE
T ss_pred cceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc---eeE
Confidence 3458899998877 2221111 111222222 56667776543 46889998654 2222211111111 111
Q ss_pred ecCCCCCcEEEEecCC-----CcEEEEecCCCc
Q 042434 445 CFGGLDGTFIASGSEN-----SQIYIWNRRNSK 472 (517)
Q Consensus 445 ~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 472 (517)
+. -++.+++.|+.+ ..+.+||..+.+
T Consensus 244 ~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 244 AA--VGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EE--ETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 11 267788888754 468899988764
No 313
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.81 E-value=0.00019 Score=73.57 Aligned_cols=202 Identities=12% Similarity=-0.026 Sum_probs=117.3
Q ss_pred CcEEEEEECCCCCEEEEe-eCCCcEEEEEecCCCe-eeEEEEeccCCCCEEEEEECCCC-CeEEEEeCCCeEEEEECCCC
Q 042434 223 NEVWFVQFSNNGEYLASS-SSDCSAIIWKVLEDSK-LTLKHTLRSHQNPVSFVAWSPDD-TKLLTCGNAEVLKLWDVETG 299 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~-~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~ 299 (517)
..+..++|++.+..|+.+ ...+.|+.+++..... ......+.........+++.+.+ +++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 456688999866666555 3467888888764100 00011111112234567887544 44455456788999998765
Q ss_pred cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEE-eCCCcEE
Q 042434 300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISV-LSDKDIR 378 (517)
Q Consensus 300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~ 378 (517)
.....+.........+++.|.+..|+.+.....-+|+.+++.+.....+..........++++|++..|+.+ +..+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 544444333345678899987666665543321238888887655444433333456789999976655544 4567899
Q ss_pred EEECCCce-EEeec---cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 379 ILNLGTYA-ERVIS---EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 379 i~d~~~~~-~~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
++|+.... ..+.. .......+++..+ ..+++....+.|..++..++
T Consensus 566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp EECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred EEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 99987644 22221 1123445555443 44555556778888886544
No 314
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.78 E-value=0.0055 Score=56.60 Aligned_cols=177 Identities=12% Similarity=0.135 Sum_probs=102.4
Q ss_pred CCCeEEEEECCC--CcEEE-EeCC-----CCCceEEEEEeC--CCC-eEEEe-eC--CCceeEEEEeCCCCeeE---eee
Q 042434 287 NAEVLKLWDVET--GICKH-TFGD-----HGFIVSSCAWFP--DSK-RLVCG-SS--DTEKGIFMCDCDGNEIK---AWR 349 (517)
Q Consensus 287 ~dg~i~iwd~~~--~~~~~-~~~~-----~~~~v~~i~~~~--~~~-~l~~~-~~--d~~v~i~~~~~~~~~~~---~~~ 349 (517)
.+|.|.++|..+ ++... .+.+ .......+.+.+ ++. +|+++ .. +..+.++.++..+.... .+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 688999999873 33211 1212 234567777766 354 34444 33 45666888887765433 333
Q ss_pred CcCCCceEEEEEccCCCEEEEEe-----------------CCCcEEEEECCCceEEeeccCCCeeEEEEcCCCCEEEEEe
Q 042434 350 GTRIPKVLDLAVTPDGENLISVL-----------------SDKDIRILNLGTYAERVISEEHPITSLSVSVDCKNFIVNL 412 (517)
Q Consensus 350 ~~~~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 412 (517)
.......+++.+.++|.+.++.. ..|.|..+|.... ......-...+.++|+||++.++++.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~-~~~~~~l~~pNGia~spDg~~lYvad 239 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAE 239 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCC-EEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeE-EEeecCCcccCcceECCCCCEEEEEe
Confidence 44445688999999998777654 1255666665421 33334445678999999998877765
Q ss_pred -CCCeEEEEEcCCCCcc--ceEEeCcccCceEEEeecCCC-CCcEEEEecCC-CcEEEEec
Q 042434 413 -NSQEIHMWDVAGKWEK--PFKYTGHSQNKYVIRSCFGGL-DGTFIASGSEN-SQIYIWNR 468 (517)
Q Consensus 413 -~d~~i~~~d~~~~~~~--~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~d-g~i~iwd~ 468 (517)
..+.|..|++...... ...+. . . ....-+...+ +|++.+++..+ +.|..|+.
T Consensus 240 t~~~~I~~~~~~~~g~l~~~~~~~-~-~--g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 240 LLAHKIHVYEKHANWTLTPLRVLS-F-D--TLVDNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEE-C-S--SEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred CCCCeEEEEEECCCCcEecCEEEe-C-C--CCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 5789999998643121 11221 1 1 1233334466 48777655433 34444443
No 315
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.78 E-value=0.042 Score=55.36 Aligned_cols=196 Identities=10% Similarity=-0.057 Sum_probs=121.7
Q ss_pred cCcEEEEEECCCCCEEE-EeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeE-EEEeCCCeEEEEECCCC
Q 042434 222 KNEVWFVQFSNNGEYLA-SSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKL-LTCGNAEVLKLWDVETG 299 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~ 299 (517)
-..+..++|++.+..|. +-..++.|..+++.... .. ..+.........+++.+.+..| ++-...+.|.+.++...
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~--~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~ 112 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LE--HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ 112 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE--EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cE--EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence 35678999999655554 44567888888875432 22 2222222456778887665555 45455778999998655
Q ss_pred cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEE
Q 042434 300 ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIR 378 (517)
Q Consensus 300 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~ 378 (517)
.....+...-.....+++.|....|+.+.....-+|+..++++.....+.. .......+++++++..|+.+. ..+.|.
T Consensus 113 ~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~ 191 (628)
T 4a0p_A 113 HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIE 191 (628)
T ss_dssp TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEE
Confidence 433333344455789999997666666654323459999998766555443 334688999999877666654 456888
Q ss_pred EEECCCce-EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434 379 ILNLGTYA-ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV 422 (517)
Q Consensus 379 i~d~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~ 422 (517)
.+|+.... ............+++.. +..+++-...+.|...|.
T Consensus 192 ~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 192 SSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANK 235 (628)
T ss_dssp EEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred EEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence 88886644 22222233445666654 334444444566666664
No 316
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.77 E-value=0.0068 Score=56.46 Aligned_cols=148 Identities=9% Similarity=0.093 Sum_probs=81.4
Q ss_pred ccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeee-EEE----EeccCCCCEEEEEECCC---CCeEEEE-eC---
Q 042434 221 HKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLT-LKH----TLRSHQNPVSFVAWSPD---DTKLLTC-GN--- 287 (517)
Q Consensus 221 h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~-~~~----~~~~h~~~v~~l~~s~~---~~~l~s~-~~--- 287 (517)
.-...+.++|.|+|+ +++ +...|.|++++.. + ... .+. ...........++|+|+ +..|..+ +.
T Consensus 16 ~l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~ 92 (353)
T 2g8s_A 16 KLDHPWALAFLPDNHGMLI-TLRGGELRHWQAG-K-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD 92 (353)
T ss_dssp EESSEEEEEECSTTCCEEE-EETTTEEEEEETT-T-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred CCCCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-C-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence 445678999999999 555 4567999888742 2 111 111 11122456789999996 4455443 22
Q ss_pred ----CCeEEEEECCCC--c--EEE-E---eCC---CCCceEEEEEeCCCCeEEEeeCCCc-----------eeEEEEeCC
Q 042434 288 ----AEVLKLWDVETG--I--CKH-T---FGD---HGFIVSSCAWFPDSKRLVCGSSDTE-----------KGIFMCDCD 341 (517)
Q Consensus 288 ----dg~i~iwd~~~~--~--~~~-~---~~~---~~~~v~~i~~~~~~~~l~~~~~d~~-----------v~i~~~~~~ 341 (517)
...|..|+...+ . ... . +.. .......++|.|||.++++.+..+. -+|+.++.+
T Consensus 93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 235666666433 1 111 1 111 1122357999999966655433211 138888887
Q ss_pred CC-------------eeEeeeCcCCCceEEEEEccCCCEEEEEe
Q 042434 342 GN-------------EIKAWRGTRIPKVLDLAVTPDGENLISVL 372 (517)
Q Consensus 342 ~~-------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 372 (517)
+. ....+.... .....++|+|....|.++.
T Consensus 173 G~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d 215 (353)
T 2g8s_A 173 GEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNE 215 (353)
T ss_dssp SCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEE
T ss_pred CCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEe
Confidence 64 122222222 2577899999433444443
No 317
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.76 E-value=0.027 Score=52.56 Aligned_cols=255 Identities=8% Similarity=0.126 Sum_probs=152.2
Q ss_pred CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC
Q 042434 243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK 322 (517)
Q Consensus 243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 322 (517)
+..|.|-|+.++... ..+... - -+.-.+|..+.+|.-. ..++.|+|+++...++.+.-.. .|.-=.|-.+ +
T Consensus 47 ~~~vvIiDl~~~~~~-~rrpi~-A----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~ 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNP-IRRPIS-A----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-N 117 (494)
T ss_dssp CCEEEEEETTSTTSC-EEEECC-C----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-T
T ss_pred CCeEEEEECCCCCcc-eecccc-c----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-C
Confidence 347888898766543 122221 1 2344678887777655 6799999999999888875443 4555556544 3
Q ss_pred eEEEeeCCCceeEEEEeCCC--CeeEeeeCcC---CCceEEEEEccCCCEEEEEeC-------CCcEEEEECCCceE-Ee
Q 042434 323 RLVCGSSDTEKGIFMCDCDG--NEIKAWRGTR---IPKVLDLAVTPDGENLISVLS-------DKDIRILNLGTYAE-RV 389 (517)
Q Consensus 323 ~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~-~~ 389 (517)
.|+..+... ||.|+..+ .+.+.+..+. ...|..-..+++.++++..+- .|.+.+|..+.... ..
T Consensus 118 ~l~lVT~ta---VyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i 194 (494)
T 1bpo_A 118 TVALVTDNA---VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI 194 (494)
T ss_dssp EEEEECSSE---EEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEE
T ss_pred eEEEEcCCe---eEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchh
Confidence 454444443 99999964 4555554332 346888888999998775442 46788999877663 33
Q ss_pred eccCCCeeEEEEcCC---CCEEEEEeC---CCeEEEEEcCCC--Cccce-------EEeCcccCceEEEeecCCCCCcEE
Q 042434 390 ISEEHPITSLSVSVD---CKNFIVNLN---SQEIHMWDVAGK--WEKPF-------KYTGHSQNKYVIRSCFGGLDGTFI 454 (517)
Q Consensus 390 ~~~~~~i~~~~~s~~---~~~l~~~~~---d~~i~~~d~~~~--~~~~~-------~~~~~~~~~~~i~~~~~s~~~~~l 454 (517)
.+|......+.+..+ ...++.+.. .+.+++.++... ..... .+.......+.+.... ++.-..+
T Consensus 195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv-s~kygvi 273 (494)
T 1bpo_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-SEKHDVV 273 (494)
T ss_dssp CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE-ETTTTEE
T ss_pred eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe-cccCCEE
Confidence 333332222222211 123333333 378999998432 11111 0111122344444333 5666688
Q ss_pred EEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 455 ASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 455 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
+.-+.-|.|++||+.++.++..-+-...+|..-+.+... .=++.....|.|.--.+
T Consensus 274 yviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~-~Gi~~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 274 FLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEAT-AGIIGVNRKGQVLSVCV 329 (494)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTT-TEEEEEETTCEEEEEEE
T ss_pred EEEecCceEEEEecccceeeeeecccCCceEEecccCCC-CcEEEEccCceEEEEEE
Confidence 888899999999999999988776556666655555443 23445556666654433
No 318
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.73 E-value=0.0032 Score=57.49 Aligned_cols=226 Identities=9% Similarity=0.031 Sum_probs=115.6
Q ss_pred CCCeEEEEeCC----CeEEEEECCCCcEEEEeC--CCCCceEEEEEeCCCCeEEEeeC----CCc---eeEEEEeCCCCe
Q 042434 278 DDTKLLTCGNA----EVLKLWDVETGICKHTFG--DHGFIVSSCAWFPDSKRLVCGSS----DTE---KGIFMCDCDGNE 344 (517)
Q Consensus 278 ~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~----d~~---v~i~~~~~~~~~ 344 (517)
++..++.|+.+ ..+.+||..+++-...-. ....... ++ ..++..++.|+. ++. -.++.+|..+..
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLA-GC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-EE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccce-EE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 45666676642 368899988776443211 1111112 22 226677777775 221 128889988765
Q ss_pred eEeeeCcCCCceEEEEEccCCCEEEEEeCC-----CcEEEEECCCce-EEeec--cCCCeeEEEEcCCCCEEEEEeCC--
Q 042434 345 IKAWRGTRIPKVLDLAVTPDGENLISVLSD-----KDIRILNLGTYA-ERVIS--EEHPITSLSVSVDCKNFIVNLNS-- 414 (517)
Q Consensus 345 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~-~~~~~--~~~~i~~~~~s~~~~~l~~~~~d-- 414 (517)
-.................-+++.++.|+.+ ..+.+||+.+.+ ..... ....-.+++.. +++.++.|+.+
T Consensus 102 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~ 180 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGT 180 (308)
T ss_dssp EEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSS
T ss_pred EeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeCCCCC
Confidence 544432222111111122266677776643 468899998876 22211 11111122222 56667776654
Q ss_pred ---CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCCCceeE--EecCCCCC
Q 042434 415 ---QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNSKPIE--ILSGHSMT 483 (517)
Q Consensus 415 ---~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~h~~~ 483 (517)
..+..||+.+. +........ ......++. -++++++.|+.+ ..+.+||+.+.+-.. .+......
T Consensus 181 ~~~~~~~~yd~~~~~W~~~~~~p~---~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 181 NRLNSAECYYPERNEWRMITAMNT---IRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSS---CCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CcCceEEEEeCCCCeEeeCCCCCC---ccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 45888998654 222111111 111111111 267788888765 469999988765332 22211112
Q ss_pred eeEEEecCCCCcEEEEeeCC-----CcEEEeCCCCC
Q 042434 484 VNCVSWNPKRPKMLASASDD-----HTIRIWGPCQS 514 (517)
Q Consensus 484 v~~v~~~~~~~~~l~s~~~d-----g~v~iw~~~~~ 514 (517)
...+.+ ++ .+++.||.+ ..+.+||+.+.
T Consensus 256 ~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 256 LGITVH--QG-RIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eEEEEE--CC-EEEEEcCcCCCcccceEEEEcCCCC
Confidence 222222 44 678888754 35778887654
No 319
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.72 E-value=0.0056 Score=55.80 Aligned_cols=183 Identities=13% Similarity=0.196 Sum_probs=113.8
Q ss_pred CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccC----CC---EEEEEeC---CCcEEEEEC--CCceEE
Q 042434 321 SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPD----GE---NLISVLS---DKDIRILNL--GTYAER 388 (517)
Q Consensus 321 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~---~l~~~~~---dg~i~i~d~--~~~~~~ 388 (517)
...++.....+- +.++|+.++.+..+.. +.++.+..-|+ |+ .+++... +++|.+|++ .+....
T Consensus 40 ~s~ii~t~k~~g--L~Vydl~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~ 114 (355)
T 3amr_A 40 NSKLITTNKKSG--LVVYSLDGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (355)
T ss_dssp GCEEEEEETTTE--EEEEETTSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred ccEEEEEcCCCC--EEEEcCCCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence 345555555554 9999999888887654 24666655552 22 2333333 578999976 343322
Q ss_pred eec-------cC-CCeeEEEE--cCC-CC-EEEEEeCCCeEEEEEcCC---C---CccceEEeCcccCceEEEeecCCCC
Q 042434 389 VIS-------EE-HPITSLSV--SVD-CK-NFIVNLNSQEIHMWDVAG---K---WEKPFKYTGHSQNKYVIRSCFGGLD 450 (517)
Q Consensus 389 ~~~-------~~-~~i~~~~~--s~~-~~-~l~~~~~d~~i~~~d~~~---~---~~~~~~~~~~~~~~~~i~~~~~s~~ 450 (517)
... .. ..+..+++ +|. ++ ++++...+|.+..|++.. + .+.++.+....+ +..|...+.
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq----~EgcvvDd~ 190 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ----TEGMAADDE 190 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC----EEEEEEETT
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC----cceEEEcCC
Confidence 221 12 55667777 774 44 688888899999999832 1 123344433322 444555777
Q ss_pred CcEEEEecCCCcEEEEecC-----CCceeEEec-CC-CCCeeEEEe--cCCCC-cEEEEeeCCCcEEEeCCC
Q 042434 451 GTFIASGSENSQIYIWNRR-----NSKPIEILS-GH-SMTVNCVSW--NPKRP-KMLASASDDHTIRIWGPC 512 (517)
Q Consensus 451 ~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~-~h-~~~v~~v~~--~~~~~-~~l~s~~~dg~v~iw~~~ 512 (517)
...|+.+-++.-|..++.+ +++.+..+. ++ ...+..|+. .+++. .+++|+-.+++..+|+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 8899999998777777754 345665553 22 246888887 45553 455555577899999986
No 320
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.69 E-value=0.015 Score=53.13 Aligned_cols=224 Identities=9% Similarity=0.029 Sum_probs=115.7
Q ss_pred eEEEEeCCCeEEEEECCCCcEEE-EeCCCCCceEEEEEeCCCCeEEEeeC-----C--Cc--eeEEEEeCCCCeeEeeeC
Q 042434 281 KLLTCGNAEVLKLWDVETGICKH-TFGDHGFIVSSCAWFPDSKRLVCGSS-----D--TE--KGIFMCDCDGNEIKAWRG 350 (517)
Q Consensus 281 ~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~-----d--~~--v~i~~~~~~~~~~~~~~~ 350 (517)
+++.|+ ..+.+||..+++-.. .+..............++..++.|+. . .. -.++.+|.....-.....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344555 578999998887543 22112223333344457788888874 1 11 127888888765544432
Q ss_pred cCCCceEEEEEccCCCEEEEEeCC--------CcEEEEECCCce-EEeecc-CCCeeEEEEcCCCCEEEEEeC-C-----
Q 042434 351 TRIPKVLDLAVTPDGENLISVLSD--------KDIRILNLGTYA-ERVISE-EHPITSLSVSVDCKNFIVNLN-S----- 414 (517)
Q Consensus 351 ~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~-~~~~~~-~~~i~~~~~s~~~~~l~~~~~-d----- 414 (517)
............-++..++.|+.+ ..+.+||..+.+ ...... .......+...+++.++.|+. +
T Consensus 85 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 164 (315)
T 4asc_A 85 LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164 (315)
T ss_dssp BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBC
T ss_pred CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCccc
Confidence 222221111222256666776632 468999998876 222111 111111222245666777765 2
Q ss_pred CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCCC-----cEEEEecCCCceeEE--ecCCCCCeeE
Q 042434 415 QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS-----QIYIWNRRNSKPIEI--LSGHSMTVNC 486 (517)
Q Consensus 415 ~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~--~~~h~~~v~~ 486 (517)
..+.+||..+. +............ ..++ ..++++++.|+.++ .+.+||..+.+-... +.........
T Consensus 165 ~~~~~yd~~~~~W~~~~~~p~~r~~---~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 239 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAPMQTARSL---FGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL 239 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBS---CEEE--EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred ceEEEEeCCCCeEEECCCCCCchhc---eEEE--EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence 46889998654 2222211111111 1111 12677788887654 588999887653332 2211122222
Q ss_pred EEecCCCCcEEEEeeCCC--------------cEEEeCCCCC
Q 042434 487 VSWNPKRPKMLASASDDH--------------TIRIWGPCQS 514 (517)
Q Consensus 487 v~~~~~~~~~l~s~~~dg--------------~v~iw~~~~~ 514 (517)
+.+ ++ .+++.||.++ .+.+||+.+.
T Consensus 240 ~~~--~~-~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 240 VSL--VG-TLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EEE--TT-EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred EEE--CC-EEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 233 44 6778887642 3667887654
No 321
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.67 E-value=0.019 Score=53.41 Aligned_cols=239 Identities=11% Similarity=0.073 Sum_probs=122.8
Q ss_pred CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe-------CCCCCceEEEEEeCC---CCeEEEee-C---CC--
Q 042434 268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF-------GDHGFIVSSCAWFPD---SKRLVCGS-S---DT-- 331 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~i~~~~~---~~~l~~~~-~---d~-- 331 (517)
.....|+|.|+|+.|+++...|.|++++. ++.....+ .........++++|+ +..|+++. . ++
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 34689999999984445567899999985 34321111 112345689999996 44444442 2 11
Q ss_pred ceeEEEEeCCCC--e---eEe-eeCc-----CCCceEEEEEccCCCEEEEEeC-------------CCcEEEEECCCc--
Q 042434 332 EKGIFMCDCDGN--E---IKA-WRGT-----RIPKVLDLAVTPDGENLISVLS-------------DKDIRILNLGTY-- 385 (517)
Q Consensus 332 ~v~i~~~~~~~~--~---~~~-~~~~-----~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~-- 385 (517)
..+|..++.... . ... +... .......+.|.|||.+.++.+. .|.|.-+|....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 234666665421 1 111 1111 1112457999999965555433 246777776543
Q ss_pred -----------e-EEeeccCCCeeEEEEcCCCCEEEEEeCCC----eEEEEEcCC--CCc--------------------
Q 042434 386 -----------A-ERVISEEHPITSLSVSVDCKNFIVNLNSQ----EIHMWDVAG--KWE-------------------- 427 (517)
Q Consensus 386 -----------~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~----~i~~~d~~~--~~~-------------------- 427 (517)
. ............++|+|....|.++.... .|.+..... ++.
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 1 11112223477899999433444433221 222211100 000
Q ss_pred ------cceEEeCcccCceEEEeec---C-CCCCcEEEEecCCCcEEEEecCCCceeEE---ecCCCCCeeEEEecCCCC
Q 042434 428 ------KPFKYTGHSQNKYVIRSCF---G-GLDGTFIASGSENSQIYIWNRRNSKPIEI---LSGHSMTVNCVSWNPKRP 494 (517)
Q Consensus 428 ------~~~~~~~~~~~~~~i~~~~---~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~v~~~~~~~ 494 (517)
....+..+. ....+.... | ..+|.++++.-..+.|...++..++.+.. +......+.++++.|+|
T Consensus 257 ~~~~~~P~~~~~~~~-ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG- 334 (353)
T 2g8s_A 257 VAGTEQPVFYWKDSP-AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG- 334 (353)
T ss_dssp CTTSCCCSEEESSCC-CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS-
T ss_pred CCCccCCeEEeCCCc-CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC-
Confidence 001111111 111111110 0 13577777777778888888876654332 22223578999999999
Q ss_pred cEEEEee-CCCcEEEeCC
Q 042434 495 KMLASAS-DDHTIRIWGP 511 (517)
Q Consensus 495 ~~l~s~~-~dg~v~iw~~ 511 (517)
.++++.. .+| +||.+
T Consensus 335 ~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 335 YLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CEEEEECSTTE--EEEEE
T ss_pred cEEEEEeCCCC--EEEEE
Confidence 4555432 345 44543
No 322
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.66 E-value=0.079 Score=55.06 Aligned_cols=264 Identities=10% Similarity=0.067 Sum_probs=151.5
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe-ccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCc
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL-RSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGI 300 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 300 (517)
...|+++.-..+|. |..|+.+| +..||- ......... ......|.++.-..++ .|..|+.+| +..||..+.+
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG---~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~ 93 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDG---YSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADR 93 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECS---SCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTE
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCC---CceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCE
Confidence 56799998888874 55666777 445553 222111000 1123568888777666 555666555 7899988764
Q ss_pred EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeee----CcCCCceEEEEEccCCCEEEEEeCCCc
Q 042434 301 CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWR----GTRIPKVLDLAVTPDGENLISVLSDKD 376 (517)
Q Consensus 301 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~ 376 (517)
...........|.++.. .++ .+..++.+| ++.++..+.....+. ......|.++....+|...+ ++.+ -
T Consensus 94 f~~~~~~~~~~i~~i~~-~~g-~lWigt~~G---l~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-G 166 (758)
T 3ott_A 94 YEQPETDFPTDVRTMAL-QGD-TLWLGALNG---LYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-G 166 (758)
T ss_dssp ECCCSCCCCSCEEEEEE-ETT-EEEEEETTE---EEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-E
T ss_pred EECcccCCCceEEEEEe-cCC-cEEEEcCCc---ceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-C
Confidence 33211112345776654 344 566666664 888888766655441 12234688888887777655 4444 5
Q ss_pred EEEEECCCceEEeecc-------CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCC
Q 042434 377 IRILNLGTYAERVISE-------EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGL 449 (517)
Q Consensus 377 i~i~d~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 449 (517)
+..+|..+........ ...|.++...+++..+.+++. +.+..+|..+. . ...+... ....+.+++...
T Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~-~-~~~~~~l--~~~~i~~i~~d~ 241 (758)
T 3ott_A 167 LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG-Q-IKQTEAF--HNNSIKSLALDG 241 (758)
T ss_dssp EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT-E-EEEEEEE--EEEEEEEEEECT
T ss_pred HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC-e-EEeccCC--CCCeEEEEEEcC
Confidence 8888887765322211 123778888777776667764 46888887654 1 1112111 112355555456
Q ss_pred CCcEEEEecCCCcEEEEecCCCceeEEec-------CCCCCeeEEEecCCCCcEEEEeeCCCcEEEe
Q 042434 450 DGTFIASGSENSQIYIWNRRNSKPIEILS-------GHSMTVNCVSWNPKRPKMLASASDDHTIRIW 509 (517)
Q Consensus 450 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw 509 (517)
+|.+.+ |+.+ -+.+++..+++...... -....|.++....+| . |..|+..| +.++
T Consensus 242 ~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWiGT~~G-l~~~ 303 (758)
T 3ott_A 242 NGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEH-N-IWLGTDYG-ISLS 303 (758)
T ss_dssp TCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTC-C-EEEEESSS-EEEE
T ss_pred CCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCC-C-EEEEeCCc-cccc
Confidence 666544 4444 48888877655332211 123468899888877 3 44555556 4444
No 323
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.61 E-value=0.034 Score=51.33 Aligned_cols=193 Identities=11% Similarity=0.080 Sum_probs=113.1
Q ss_pred EEeccccCcEEEEEECCCCCEEEEee------------CCCcEEEEEecCC-CeeeEEEEecc-----CCCCEEEEEECC
Q 042434 216 QILTEHKNEVWFVQFSNNGEYLASSS------------SDCSAIIWKVLED-SKLTLKHTLRS-----HQNPVSFVAWSP 277 (517)
Q Consensus 216 ~~l~~h~~~v~~~~~s~~~~~l~t~~------------~dg~i~iw~~~~~-~~~~~~~~~~~-----h~~~v~~l~~s~ 277 (517)
..+.+-....-.+...|+|..+++++ .+|.|.++|..+. .+...+ .+.+ .......+.+.+
T Consensus 43 ~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~ 121 (355)
T 3sre_A 43 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFI 121 (355)
T ss_dssp EECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEE
T ss_pred EEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEE
Confidence 33444223344556788876555542 6899999998632 122222 2222 234667777755
Q ss_pred --CCC-eEEEE-eC--CCeEEEEECCCC--c--EEEEeCCC-CCceEEEEEeCCCCeEEEeeC---C------------C
Q 042434 278 --DDT-KLLTC-GN--AEVLKLWDVETG--I--CKHTFGDH-GFIVSSCAWFPDSKRLVCGSS---D------------T 331 (517)
Q Consensus 278 --~~~-~l~s~-~~--dg~i~iwd~~~~--~--~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~---d------------~ 331 (517)
++. +|+++ .. +.+|.+|++..+ . .+..+.+. -.....+.+.++|.+.++... | .
T Consensus 122 d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 122 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCC
T ss_pred CCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCC
Confidence 343 44444 32 467888877543 2 23334332 346788999999987776541 1 2
Q ss_pred ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEe-CCCcEEEEECCC-ce---EEeeccCCCeeEEEEcC-CC
Q 042434 332 EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVL-SDKDIRILNLGT-YA---ERVISEEHPITSLSVSV-DC 405 (517)
Q Consensus 332 ~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~---~~~~~~~~~i~~~~~s~-~~ 405 (517)
.-.++.++.. .+...... ....+.++|+||++.++++. ..+.|..|++.. +. ............+++.+ +|
T Consensus 202 ~g~vyr~d~~--~~~~~~~~-l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 202 WSFVTYYSPN--DVRVVAEG-FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTG 278 (355)
T ss_dssp CEEEEEECTT--CCEEEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTC
T ss_pred ccEEEEEECC--eEEEeecC-CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCC
Confidence 2348888774 22222211 23578999999998877665 567899999863 22 22223345677888888 58
Q ss_pred CEEEEEe
Q 042434 406 KNFIVNL 412 (517)
Q Consensus 406 ~~l~~~~ 412 (517)
+..+++.
T Consensus 279 ~lwva~~ 285 (355)
T 3sre_A 279 DLWVGCH 285 (355)
T ss_dssp CEEEEEE
T ss_pred cEEEEec
Confidence 7766554
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.57 E-value=0.032 Score=50.95 Aligned_cols=227 Identities=9% Similarity=0.045 Sum_probs=115.1
Q ss_pred EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC----C-------CeEEEEECCCCcEEEE
Q 042434 236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN----A-------EVLKLWDVETGICKHT 304 (517)
Q Consensus 236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d-------g~i~iwd~~~~~~~~~ 304 (517)
+++.|+ ..+.+||..++ .+.. ..+..............++..++.|+. + ..+.+||..+++-...
T Consensus 7 l~~~GG--~~~~~yd~~~~-~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAAN-ECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTT-EEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCC-eEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 344555 46889998654 3332 222222222333334457778888873 1 1277889888764332
Q ss_pred eCCC--CCceEEEEEeCCCCeEEEeeCC------CceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC-C-
Q 042434 305 FGDH--GFIVSSCAWFPDSKRLVCGSSD------TEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS-D- 374 (517)
Q Consensus 305 ~~~~--~~~v~~i~~~~~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d- 374 (517)
-... ......+. -++..++.|+.+ ..-.++.+|..+..-..............+...+++.++.|+. +
T Consensus 83 ~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 83 PPLPSPRCLFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp CCBSSCEESCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTT
T ss_pred CCCCcchhceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCC
Confidence 1111 11111222 266777777732 1123888998876544433222222222222346667777766 2
Q ss_pred ----CcEEEEECCCce-EEeeccC-CC-eeEEEEcCCCCEEEEEeCCC-----eEEEEEcCCC-CccceEEeCcccCceE
Q 042434 375 ----KDIRILNLGTYA-ERVISEE-HP-ITSLSVSVDCKNFIVNLNSQ-----EIHMWDVAGK-WEKPFKYTGHSQNKYV 441 (517)
Q Consensus 375 ----g~i~i~d~~~~~-~~~~~~~-~~-i~~~~~s~~~~~l~~~~~d~-----~i~~~d~~~~-~~~~~~~~~~~~~~~~ 441 (517)
..+.+||+.+.. ....... .. -.+++ .-+++.++.|+.++ .+.+||+.+. +....... .....
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~ 236 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFP---QERSS 236 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCS---SCCBS
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCC---Ccccc
Confidence 468999998876 2221111 11 11222 22667777776544 5888888654 22221111 11111
Q ss_pred EEeecCCCCCcEEEEecCCC--------------cEEEEecCCCcee
Q 042434 442 IRSCFGGLDGTFIASGSENS--------------QIYIWNRRNSKPI 474 (517)
Q Consensus 442 i~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~ 474 (517)
..++ ..++++++.|+.++ .+.+||..+.+-.
T Consensus 237 ~~~~--~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 237 LSLV--SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp CEEE--EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred eeEE--EECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 1111 12567777777532 4778888776543
No 325
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.49 E-value=0.018 Score=52.38 Aligned_cols=229 Identities=7% Similarity=-0.030 Sum_probs=115.5
Q ss_pred CCCEEEEeeC----CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC----C-----CeEEEEECCCC
Q 042434 233 NGEYLASSSS----DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN----A-----EVLKLWDVETG 299 (517)
Q Consensus 233 ~~~~l~t~~~----dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d-----g~i~iwd~~~~ 299 (517)
++.+++.|+. -..+.+||..+. .+.....+......-..+.+ ++..++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNG-TWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTT-EEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCC-eEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 5566666663 235778887543 23222211111111122222 5667777765 2 36888998877
Q ss_pred cEEEEe--CCCCCceEEEEEeCCCCeEEEeeCCCc---eeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC
Q 042434 300 ICKHTF--GDHGFIVSSCAWFPDSKRLVCGSSDTE---KGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD 374 (517)
Q Consensus 300 ~~~~~~--~~~~~~v~~i~~~~~~~~l~~~~~d~~---v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 374 (517)
+-...- .........+.+ +++.++.|+.++. -.++.+|..+..-..............+..-++..++.|+.+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 178 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFD 178 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCC
Confidence 643321 111222222222 6777777765432 238889988765544432221111111122266677777654
Q ss_pred -----CcEEEEECCCceEEee-c--cCCCeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCC-CccceEEeCcccCce
Q 042434 375 -----KDIRILNLGTYAERVI-S--EEHPITSLSVSVDCKNFIVNLNS-----QEIHMWDVAGK-WEKPFKYTGHSQNKY 440 (517)
Q Consensus 375 -----g~i~i~d~~~~~~~~~-~--~~~~i~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~-~~~~~~~~~~~~~~~ 440 (517)
..+.+||+.+..-... . ....-.+++.. +++.++.|+.+ ..+.+||+.+. +..+.........
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-- 255 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA-- 255 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS--
T ss_pred CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc--
Confidence 4689999988762211 1 11111222222 56677777654 46899998654 2222111111111
Q ss_pred EEEeecCCCCCcEEEEecCC-----CcEEEEecCCCc
Q 042434 441 VIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNSK 472 (517)
Q Consensus 441 ~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 472 (517)
..++ ..++++++.|+.+ ..+.+||..+.+
T Consensus 256 -~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 256 -LGIT--VHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp -CEEE--EETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred -eEEE--EECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1111 1267778888754 357888887664
No 326
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.43 E-value=0.0084 Score=55.98 Aligned_cols=228 Identities=11% Similarity=0.024 Sum_probs=111.0
Q ss_pred CCCeEEEEeCC-CeEEEEECCC--CcEEEEeCC----CCCceEEEEEeCCCCeEEEeeC-C---C----ceeEEEEeCCC
Q 042434 278 DDTKLLTCGNA-EVLKLWDVET--GICKHTFGD----HGFIVSSCAWFPDSKRLVCGSS-D---T----EKGIFMCDCDG 342 (517)
Q Consensus 278 ~~~~l~s~~~d-g~i~iwd~~~--~~~~~~~~~----~~~~v~~i~~~~~~~~l~~~~~-d---~----~v~i~~~~~~~ 342 (517)
++..++.|+.+ ..+.++|+.+ .+-. .+.. ......++.+ ++..++.|+. + + .-.++.+|...
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~-~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWT-ALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEE-ECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCee-ECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 55566666543 4688888864 3322 2221 1112222222 5677777776 2 1 12388999887
Q ss_pred CeeEeeeCcC-CCceEEEEEccCCCEEEEEeCC---------------------------------------CcEEEEEC
Q 042434 343 NEIKAWRGTR-IPKVLDLAVTPDGENLISVLSD---------------------------------------KDIRILNL 382 (517)
Q Consensus 343 ~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d---------------------------------------g~i~i~d~ 382 (517)
..-....... .......+...+++.++.|+.+ ..+.+||.
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred CcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 6554433322 2222222222567777788754 57899999
Q ss_pred CCce-EEeec--cCCCe-eEEEEcCCCCEEEEEeC------CCeEEEEEc--CCC-CccceEEeCcccCceEEEeecCCC
Q 042434 383 GTYA-ERVIS--EEHPI-TSLSVSVDCKNFIVNLN------SQEIHMWDV--AGK-WEKPFKYTGHSQNKYVIRSCFGGL 449 (517)
Q Consensus 383 ~~~~-~~~~~--~~~~i-~~~~~s~~~~~l~~~~~------d~~i~~~d~--~~~-~~~~~~~~~~~~~~~~i~~~~~s~ 449 (517)
.+.. ..... ..... .+++. -+++.++.|+. ...+..||+ .+. +..+........ .....++ ..
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~-~~~~~~~--~~ 251 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG-VAGGFAG--IS 251 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC-CBSCEEE--EE
T ss_pred CCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc-cccceEE--EE
Confidence 8877 22211 11112 23333 25566666653 345777876 321 222221111110 0000011 23
Q ss_pred CCcEEEEecCC----------------------CcEEEEecCCCc--eeEEecCCCCCeeEEEecCCCCcEEEEeeCCC-
Q 042434 450 DGTFIASGSEN----------------------SQIYIWNRRNSK--PIEILSGHSMTVNCVSWNPKRPKMLASASDDH- 504 (517)
Q Consensus 450 ~~~~l~~~~~d----------------------g~i~iwd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg- 504 (517)
++++++.|+.+ ..+.+||+.+.+ .+..+......-.++. -++ .+++.||.++
T Consensus 252 ~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~-~i~v~GG~~~~ 328 (357)
T 2uvk_A 252 NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNN-SLLIIGGETAG 328 (357)
T ss_dssp TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETT-EEEEEEEECGG
T ss_pred CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCC-EEEEEeeeCCC
Confidence 67777777742 257889987654 4444443222222333 345 6888888653
Q ss_pred -----cEEEeCCCCCC
Q 042434 505 -----TIRIWGPCQSS 515 (517)
Q Consensus 505 -----~v~iw~~~~~~ 515 (517)
.|.++++++++
T Consensus 329 ~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 329 GKAVTDSVLITVKDNK 344 (357)
T ss_dssp GCEEEEEEEEEC-CCS
T ss_pred CCEeeeEEEEEEcCcE
Confidence 35555777655
No 327
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.42 E-value=0.04 Score=50.32 Aligned_cols=229 Identities=12% Similarity=0.107 Sum_probs=114.2
Q ss_pred EEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeC----CC-------eEEEEECCCCcEEEE
Q 042434 236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGN----AE-------VLKLWDVETGICKHT 304 (517)
Q Consensus 236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~ 304 (517)
.++.|+. .+..||..++. +.. .................++..++.|+. ++ .+.+||..+++-...
T Consensus 18 i~~~GG~--~~~~yd~~~~~-W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENE-CYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTE-EEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCc-eec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 3444543 37888876542 322 222211122223334456778888873 12 277889887765432
Q ss_pred eC--CCCCceEEEEEeCCCCeEEEeeCC--C---ceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeC----
Q 042434 305 FG--DHGFIVSSCAWFPDSKRLVCGSSD--T---EKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLS---- 373 (517)
Q Consensus 305 ~~--~~~~~v~~i~~~~~~~~l~~~~~d--~---~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---- 373 (517)
-. ........+.+ ++..++.|+.+ + .-.++.+|..+..-..............+...+++.++.|+.
T Consensus 94 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 94 PPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDK 171 (318)
T ss_dssp SCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSS
T ss_pred CCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCC
Confidence 11 11111122222 66777777754 1 123888898876554443222211111222246667777764
Q ss_pred --CCcEEEEECCCce-EEeec--cCCCeeEEEEcCCCCEEEEEeCC-----CeEEEEEcCCC-CccceEEeCcccCceEE
Q 042434 374 --DKDIRILNLGTYA-ERVIS--EEHPITSLSVSVDCKNFIVNLNS-----QEIHMWDVAGK-WEKPFKYTGHSQNKYVI 442 (517)
Q Consensus 374 --dg~i~i~d~~~~~-~~~~~--~~~~i~~~~~s~~~~~l~~~~~d-----~~i~~~d~~~~-~~~~~~~~~~~~~~~~i 442 (517)
-..+.+||+.+.. ..... ....-.+++. -+++.++.|+.+ ..+.+||+.+. +............ .
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~---~ 247 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS---I 247 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS---C
T ss_pred CccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc---e
Confidence 2469999998877 22211 1111122222 256667776543 35778888653 2222221111111 1
Q ss_pred EeecCCCCCcEEEEecCC--------------CcEEEEecCCCceeEE
Q 042434 443 RSCFGGLDGTFIASGSEN--------------SQIYIWNRRNSKPIEI 476 (517)
Q Consensus 443 ~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~ 476 (517)
.++ ..++++++.|+.+ ..+.+||..+.+-...
T Consensus 248 ~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 248 SLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEE--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEE--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 111 2356777777754 3578888887654433
No 328
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.36 E-value=0.059 Score=49.22 Aligned_cols=223 Identities=10% Similarity=0.073 Sum_probs=111.7
Q ss_pred eEEEEeCCCeEEEEECCCCcEEE-EeCCCCCceEEEEEeCCCCeEEEeeCC----Cc-----eeEEEEeCCCCeeEeeeC
Q 042434 281 KLLTCGNAEVLKLWDVETGICKH-TFGDHGFIVSSCAWFPDSKRLVCGSSD----TE-----KGIFMCDCDGNEIKAWRG 350 (517)
Q Consensus 281 ~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~~~~~d----~~-----v~i~~~~~~~~~~~~~~~ 350 (517)
.++.|+. .+..||..+++-.. ................++..++.|+.. +. ..++.+|.....-.....
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444443 47899998887544 121112222333345577788888731 21 127888887765544432
Q ss_pred cCCCce-EEEEEccCCCEEEEEeCC-------CcEEEEECCCce-EEeeccCCC-eeEEEEcCCCCEEEEEeC------C
Q 042434 351 TRIPKV-LDLAVTPDGENLISVLSD-------KDIRILNLGTYA-ERVISEEHP-ITSLSVSVDCKNFIVNLN------S 414 (517)
Q Consensus 351 ~~~~~i-~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~-~~~~~~~~~-i~~~~~s~~~~~l~~~~~------d 414 (517)
...... .+++. -++..++.|+.+ ..+.+||..+.+ ........+ ....+...+++.++.|+. .
T Consensus 96 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 174 (318)
T 2woz_A 96 LPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCT 174 (318)
T ss_dssp BSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBC
T ss_pred CCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCcc
Confidence 221111 12222 256677777654 258889998876 222111111 111122246666676654 2
Q ss_pred CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCC-----CcEEEEecCCCceeE--EecCCCCCeeE
Q 042434 415 QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN-----SQIYIWNRRNSKPIE--ILSGHSMTVNC 486 (517)
Q Consensus 415 ~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~h~~~v~~ 486 (517)
..+..||+.+. +....... .......++ ..++++++.|+.+ ..+.+||..+.+-.. .+.........
T Consensus 175 ~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 249 (318)
T 2woz_A 175 NRVFIYNPKKGDWKDLAPMK---TPRSMFGVA--IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISL 249 (318)
T ss_dssp CCEEEEETTTTEEEEECCCS---SCCBSCEEE--EETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEE
T ss_pred ceEEEEcCCCCEEEECCCCC---CCcccceEE--EECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEE
Confidence 35889998664 22221111 111101111 1266777777654 357789988765322 22222222222
Q ss_pred EEecCCCCcEEEEeeCC--------------CcEEEeCCCCC
Q 042434 487 VSWNPKRPKMLASASDD--------------HTIRIWGPCQS 514 (517)
Q Consensus 487 v~~~~~~~~~l~s~~~d--------------g~v~iw~~~~~ 514 (517)
+.+ ++ .+++.||.+ ..+.+||+.+.
T Consensus 250 ~~~--~~-~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 250 VSL--AG-SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp EEE--TT-EEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred EEE--CC-EEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 222 34 677777754 34777887653
No 329
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.28 E-value=0.3 Score=52.90 Aligned_cols=193 Identities=9% Similarity=-0.011 Sum_probs=101.7
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCC------CCeEEEEeC-CCeEEEEEC
Q 042434 224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPD------DTKLLTCGN-AEVLKLWDV 296 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~------~~~l~s~~~-dg~i~iwd~ 296 (517)
.|.+.+.+. .+++.++ ++.+.++.+..+ .+....... -...|.|+++.|. +++++.|.. |++++|+++
T Consensus 515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~-~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL 589 (1158)
T 3ei3_A 515 NISVASCNS--SQVVVAV-GRALYYLQIHPQ-ELRQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL 589 (1158)
T ss_dssp CCCEEEECS--SEEEEEE-TTEEEEEEEETT-EEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEET
T ss_pred EEEEEEeCC--CEEEEEE-CCEEEEEEeeCC-ceeeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEEC
Confidence 455555443 3555554 577888887653 333333322 3568999999863 478999986 999999999
Q ss_pred CCCcEEEEeCC-CCCceEEEEEe--CCCCeEEEeeCCCceeEEEEeCCCCeeE----eeeCcCCCceEEEEEccCCCEEE
Q 042434 297 ETGICKHTFGD-HGFIVSSCAWF--PDSKRLVCGSSDTEKGIFMCDCDGNEIK----AWRGTRIPKVLDLAVTPDGENLI 369 (517)
Q Consensus 297 ~~~~~~~~~~~-~~~~v~~i~~~--~~~~~l~~~~~d~~v~i~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~ 369 (517)
.+.+.+....- ......++.+. ....++.+|-.||.+.-+.+|..+..+. ...+. .++.-..+...+..-+
T Consensus 590 ~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~--~pv~L~~~~~~~~~~V 667 (1158)
T 3ei3_A 590 PSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGT--QPTVLRTFRSLSTTNV 667 (1158)
T ss_dssp TTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCS--SCCEEEEEESSSCEEE
T ss_pred CCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCC--CceEEEEEeeCCceeE
Confidence 88766654321 12234444433 2345788999999865556665433332 12222 2344334444444333
Q ss_pred EEeCCCcEEEEECCCceEEeeccCCCee-EEEEcCC--CCEEEEEeCCCeEEEEEcCC
Q 042434 370 SVLSDKDIRILNLGTYAERVISEEHPIT-SLSVSVD--CKNFIVNLNSQEIHMWDVAG 424 (517)
Q Consensus 370 ~~~~dg~i~i~d~~~~~~~~~~~~~~i~-~~~~s~~--~~~l~~~~~d~~i~~~d~~~ 424 (517)
.+..+....+|.-+..-.........+. ...|+.. ..-++..+ ++.+++..+..
T Consensus 668 ~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~ 724 (1158)
T 3ei3_A 668 FACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDE 724 (1158)
T ss_dssp EEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECC
T ss_pred EEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecc
Confidence 3444444444543322111111112232 2334332 23344333 45588877643
No 330
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.24 E-value=0.16 Score=48.87 Aligned_cols=153 Identities=13% Similarity=0.131 Sum_probs=89.2
Q ss_pred EeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEecc------CCCCEEEEEECCC---CCeEEEEeC
Q 042434 217 ILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRS------HQNPVSFVAWSPD---DTKLLTCGN 287 (517)
Q Consensus 217 ~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~------h~~~v~~l~~s~~---~~~l~s~~~ 287 (517)
.+...-...+.++|.|+|+++++-...+.|++++..++. ...+..+.. .......|+|+|+ +..|..+..
T Consensus 21 ~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~-~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 21 VILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGS-VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred EEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc-EeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 333334567899999999977775444568777654332 233333321 2456789999995 555544432
Q ss_pred -------------CCeEEEEECCCC--c-----EEE-EeCC-CCCceEEEEEeCCCCeEEEeeCCC--------------
Q 042434 288 -------------AEVLKLWDVETG--I-----CKH-TFGD-HGFIVSSCAWFPDSKRLVCGSSDT-------------- 331 (517)
Q Consensus 288 -------------dg~i~iwd~~~~--~-----~~~-~~~~-~~~~v~~i~~~~~~~~l~~~~~d~-------------- 331 (517)
...|.-++...+ + .+. .+.. .......++|.|||.++++.+..+
T Consensus 100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~ 179 (454)
T 1cru_A 100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQ 179 (454)
T ss_dssp EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTT
T ss_pred ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccc
Confidence 134555554322 1 111 1221 123468899999998777654321
Q ss_pred ----------------ceeEEEEeCCCC-----------eeEeeeCcCCCceEEEEEccCCCEEEEE
Q 042434 332 ----------------EKGIFMCDCDGN-----------EIKAWRGTRIPKVLDLAVTPDGENLISV 371 (517)
Q Consensus 332 ----------------~v~i~~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 371 (517)
.-+|+.++.++. ....+...+ .....++|+|+|.++++-
T Consensus 180 ~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d 245 (454)
T 1cru_A 180 HTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSE 245 (454)
T ss_dssp CCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEE
T ss_pred cccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEe
Confidence 124888887765 223333333 367889999987755543
No 331
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.20 E-value=0.13 Score=47.17 Aligned_cols=154 Identities=15% Similarity=0.075 Sum_probs=93.6
Q ss_pred ccEEEeccccCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEe----ccCCCCEEEEEECCC---CCeEEEE
Q 042434 213 ETVQILTEHKNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTL----RSHQNPVSFVAWSPD---DTKLLTC 285 (517)
Q Consensus 213 ~~~~~l~~h~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~----~~h~~~v~~l~~s~~---~~~l~s~ 285 (517)
..+.++...-...+.++|.|+|.++++--..|.|++++...+. ...+..+ .........|+++|+ +..|...
T Consensus 22 ~~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~-~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 22 KVLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR-KTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp EEEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred ceeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc-EeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 3455566667788999999999987776558999888754332 2223222 223567899999995 3444432
Q ss_pred ---eCCCeEEEEECCCC----------cEE-EEeC-CCCCceEEEEEeCCCCeEEEeeC-------------CCceeEEE
Q 042434 286 ---GNAEVLKLWDVETG----------ICK-HTFG-DHGFIVSSCAWFPDSKRLVCGSS-------------DTEKGIFM 337 (517)
Q Consensus 286 ---~~dg~i~iwd~~~~----------~~~-~~~~-~~~~~v~~i~~~~~~~~l~~~~~-------------d~~v~i~~ 337 (517)
..++.|.-|....+ +.+ ..+. ........+.|.|||.++++.+. .|. |+.
T Consensus 101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~--IlR 178 (347)
T 3das_A 101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGK--ILR 178 (347)
T ss_dssp EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTC--EEE
T ss_pred EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCE--EEE
Confidence 23456666665541 111 1222 11223456999999987777542 244 888
Q ss_pred EeCCCC--------eeEeeeCcCCCceEEEEEccCCCEEEE
Q 042434 338 CDCDGN--------EIKAWRGTRIPKVLDLAVTPDGENLIS 370 (517)
Q Consensus 338 ~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~ 370 (517)
++.++. ....+...+ .....++|+|+|.+.++
T Consensus 179 i~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~ 218 (347)
T 3das_A 179 MTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFAS 218 (347)
T ss_dssp ECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEE
T ss_pred EeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEE
Confidence 887764 122233222 25678999998776554
No 332
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.15 E-value=0.2 Score=48.26 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=62.5
Q ss_pred CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE--EEeCC------CCCceEEEEEeCC---CCeEEEeeCC------
Q 042434 268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK--HTFGD------HGFIVSSCAWFPD---SKRLVCGSSD------ 330 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~------~~~~v~~i~~~~~---~~~l~~~~~d------ 330 (517)
...+.|+|.|+|+++++-...+.|.+++..+++.. ..+.. .......++|+|+ +..|+++...
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45679999999987776544457888886656532 22321 2456779999995 5555544321
Q ss_pred -C----ceeEEEEeCCC--Cee----Ee---eeCcCCCceEEEEEccCCCEEEEEe
Q 042434 331 -T----EKGIFMCDCDG--NEI----KA---WRGTRIPKVLDLAVTPDGENLISVL 372 (517)
Q Consensus 331 -~----~v~i~~~~~~~--~~~----~~---~~~~~~~~i~~~~~~~~~~~l~~~~ 372 (517)
+ .-+|+.++... ..+ .. +..........+.|.|||.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 1 23466665432 111 11 1111123578899999999777654
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.12 E-value=0.046 Score=50.87 Aligned_cols=238 Identities=8% Similarity=0.026 Sum_probs=116.2
Q ss_pred CCCEEEEeeCC-CcEEEEEecC-CCeeeEEEEec-cCCCCEEEEEECCCCCeEEEEeC-C---------CeEEEEECCCC
Q 042434 233 NGEYLASSSSD-CSAIIWKVLE-DSKLTLKHTLR-SHQNPVSFVAWSPDDTKLLTCGN-A---------EVLKLWDVETG 299 (517)
Q Consensus 233 ~~~~l~t~~~d-g~i~iw~~~~-~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~s~~~-d---------g~i~iwd~~~~ 299 (517)
++.+++.|+.+ ..+.+||... ...+..+..+. .....-.++.+ ++..++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56666666643 4577788753 23443333322 11112222233 5667777776 2 36889999887
Q ss_pred cEEEEeCCC-CCceEEEEEeCCCCeEEEeeCCCc-------------------------------------eeEEEEeCC
Q 042434 300 ICKHTFGDH-GFIVSSCAWFPDSKRLVCGSSDTE-------------------------------------KGIFMCDCD 341 (517)
Q Consensus 300 ~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~~d~~-------------------------------------v~i~~~~~~ 341 (517)
+-...-... .......+...+++.++.|+.++. -.++.+|..
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 644322111 111111122256778888876532 248999988
Q ss_pred CCeeEeeeCcCCC-ce-EEEEEccCCCEEEEEeC------CCcEEEEEC--CCce-EEeecc--C-CCeeEEEEcCCCCE
Q 042434 342 GNEIKAWRGTRIP-KV-LDLAVTPDGENLISVLS------DKDIRILNL--GTYA-ERVISE--E-HPITSLSVSVDCKN 407 (517)
Q Consensus 342 ~~~~~~~~~~~~~-~i-~~~~~~~~~~~l~~~~~------dg~i~i~d~--~~~~-~~~~~~--~-~~i~~~~~s~~~~~ 407 (517)
+..-......... .. .+++. -+++.++.|+. ...+.+||+ .+.. ...... . ......+...+++.
T Consensus 177 ~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i 255 (357)
T 2uvk_A 177 TQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSL 255 (357)
T ss_dssp TTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEE
T ss_pred CCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEE
Confidence 7654433322211 11 22332 25566666653 346778887 4444 211111 1 11122223335666
Q ss_pred EEEEeCC----------------------CeEEEEEcCCC-CccceEEeCcccCceEEEeecCCCCCcEEEEecCCC---
Q 042434 408 FIVNLNS----------------------QEIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENS--- 461 (517)
Q Consensus 408 l~~~~~d----------------------~~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--- 461 (517)
++.|+.+ ..+.+||+.+. +..+..+........ ++ ..++++++.|+.++
T Consensus 256 yv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~---~~--~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 256 IFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGV---SL--PWNNSLLIIGGETAGGK 330 (357)
T ss_dssp EEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSE---EE--EETTEEEEEEEECGGGC
T ss_pred EEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccce---eE--EeCCEEEEEeeeCCCCC
Confidence 7776632 25778998653 333322221111111 11 23677888888653
Q ss_pred ---cEEEEecCCCceeEEec
Q 042434 462 ---QIYIWNRRNSKPIEILS 478 (517)
Q Consensus 462 ---~i~iwd~~~~~~~~~~~ 478 (517)
.|.++++++++.+....
T Consensus 331 ~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp EEEEEEEEEC-CCSCEEEC-
T ss_pred EeeeEEEEEEcCcEeEeeec
Confidence 46666888777665443
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.05 E-value=0.033 Score=59.95 Aligned_cols=234 Identities=9% Similarity=0.125 Sum_probs=130.8
Q ss_pred CCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCC
Q 042434 243 DCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSK 322 (517)
Q Consensus 243 dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 322 (517)
..+|.|-|+.++... .+. .-.--+.-.+|..+.+|.-. ..++.|+|+++...++.+.- ..+|.-=.|-.+.
T Consensus 47 ~~~vvIidl~~~~~~--~rr----pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~- 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNP--IRR----PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN- 117 (1630)
T ss_pred CceEEEEECCCCCCc--ccc----cccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-
Confidence 347888888765432 111 11112334577777666654 67999999999888777644 3455555666443
Q ss_pred eEEEeeCCCceeEEEEeCCC--CeeEeeeCcC---CCceEEEEEccCCCEEEEEeC-------CCcEEEEECCCce-EEe
Q 042434 323 RLVCGSSDTEKGIFMCDCDG--NEIKAWRGTR---IPKVLDLAVTPDGENLISVLS-------DKDIRILNLGTYA-ERV 389 (517)
Q Consensus 323 ~l~~~~~d~~v~i~~~~~~~--~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~-~~~ 389 (517)
.|+..+... |+.|+..+ .+.+.+..+. ...|..-..+++.++++..+- .|.+.+|...... ...
T Consensus 118 ~l~lVT~~a---VyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~i 194 (1630)
T 1xi4_A 118 TVALVTDNA---VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI 194 (1630)
T ss_pred eeEEEcCCe---EEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhh
Confidence 444444333 99999965 2333332221 246778888899998775442 4788888887665 222
Q ss_pred eccCCCeeEEEEc--CC-CCEEEEEeC---CCeEEEEEcCCC--Cccce-------EEeCcccCceEEEeecCCCCCcEE
Q 042434 390 ISEEHPITSLSVS--VD-CKNFIVNLN---SQEIHMWDVAGK--WEKPF-------KYTGHSQNKYVIRSCFGGLDGTFI 454 (517)
Q Consensus 390 ~~~~~~i~~~~~s--~~-~~~l~~~~~---d~~i~~~d~~~~--~~~~~-------~~~~~~~~~~~i~~~~~s~~~~~l 454 (517)
-+|......+... +. ...++.+.. .+.+++.++... ..... .+.......+++... .++.-..+
T Consensus 195 egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~-vs~k~g~i 273 (1630)
T 1xi4_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ-ISEKHDVV 273 (1630)
T ss_pred hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEE-eccccCEE
Confidence 2333222222221 11 122222222 368888888432 01111 111111223333332 35666678
Q ss_pred EEecCCCcEEEEecCCCceeEEecCCCCCeeEEEe
Q 042434 455 ASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSW 489 (517)
Q Consensus 455 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 489 (517)
..-+.-|.|++||+.+|.++..-+-...+|...+.
T Consensus 274 y~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~ 308 (1630)
T 1xi4_A 274 FLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP 308 (1630)
T ss_pred EEEecCceEEEEecccchhhhhccccCCceEEecc
Confidence 88889999999999999887654433444443333
No 335
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.93 E-value=0.01 Score=49.95 Aligned_cols=132 Identities=10% Similarity=-0.007 Sum_probs=79.6
Q ss_pred CCeEEEEeCCCeEEEEECCCCc------EEEEeCC-CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCc
Q 042434 279 DTKLLTCGNAEVLKLWDVETGI------CKHTFGD-HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGT 351 (517)
Q Consensus 279 ~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~ 351 (517)
...|+....| +++.=...++. ...++.. .=..+..++|+|+|.+.++ .+|. ++..+..+..-..+...
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~--Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDK--IYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTE--EEEESCCCSTTCCHHHH
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCe--EEEECCCCCCccccccc
Confidence 3455565666 55544444332 1122211 1236679999999987666 6666 88888754332333222
Q ss_pred -------CCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--E-----Eeec--cCCCeeEEEEcCCCCEEEEEeCCC
Q 042434 352 -------RIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--E-----RVIS--EEHPITSLSVSVDCKNFIVNLNSQ 415 (517)
Q Consensus 352 -------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~-----~~~~--~~~~i~~~~~s~~~~~l~~~~~d~ 415 (517)
.-.....+.|.|+|.+.++ .||.|+-++..+.. . ..+. .-..+..+.+.|+|...++. ++
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg 154 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQ 154 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CC
Confidence 1112378899999988777 66999888764322 1 1111 11467999999999888877 77
Q ss_pred eEEE
Q 042434 416 EIHM 419 (517)
Q Consensus 416 ~i~~ 419 (517)
.++-
T Consensus 155 ~lyr 158 (236)
T 1tl2_A 155 QFYK 158 (236)
T ss_dssp EEEE
T ss_pred cEEe
Confidence 6543
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.90 E-value=0.25 Score=45.32 Aligned_cols=234 Identities=12% Similarity=0.075 Sum_probs=125.2
Q ss_pred eccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEE--EEe----CCCCCceEEEEEeCC---CCeEEEe-eCCCc
Q 042434 263 LRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICK--HTF----GDHGFIVSSCAWFPD---SKRLVCG-SSDTE 332 (517)
Q Consensus 263 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~----~~~~~~v~~i~~~~~---~~~l~~~-~~d~~ 332 (517)
+...-...+.|+|.|||.++++--..|.|++++..+++.. ..+ .........++++|+ +..|++. +....
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3333456789999999987777655899999987666542 222 123566789999995 3444432 22222
Q ss_pred eeEEEEeCCCC---------eeEe---eeCcCCCceEEEEEccCCCEEEEEeC-------------CCcEEEEECCCc--
Q 042434 333 KGIFMCDCDGN---------EIKA---WRGTRIPKVLDLAVTPDGENLISVLS-------------DKDIRILNLGTY-- 385 (517)
Q Consensus 333 v~i~~~~~~~~---------~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~-- 385 (517)
-+|..+...+. .... +..........+.|.|||.+.++.+. .|.|.-++....
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 34777765431 1111 11111124567999999987776542 356666665543
Q ss_pred ------e-EEeeccCCCeeEEEEcCCCCEEEEEeC-CC--eEEEEEcCC--CCc-------------cceEEeCcccCce
Q 042434 386 ------A-ERVISEEHPITSLSVSVDCKNFIVNLN-SQ--EIHMWDVAG--KWE-------------KPFKYTGHSQNKY 440 (517)
Q Consensus 386 ------~-~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~--~i~~~d~~~--~~~-------------~~~~~~~~~~~~~ 440 (517)
. ............++|+|+|..+++-.. ++ .|....--. +|. ....+..+...
T Consensus 187 ~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a-- 264 (347)
T 3das_A 187 PGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS-- 264 (347)
T ss_dssp TTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC--
T ss_pred CCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC--
Confidence 1 111222234678999998776555432 22 232221100 000 01111111001
Q ss_pred EEEeecCCCCCcEEEEecCCCcEEEEecCCCce----eEEecCCCCCeeEEEecCCCCcEEEEee
Q 042434 441 VIRSCFGGLDGTFIASGSENSQIYIWNRRNSKP----IEILSGHSMTVNCVSWNPKRPKMLASAS 501 (517)
Q Consensus 441 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~v~~~~~~~~~l~s~~ 501 (517)
..-..+ .+|..++..-..+.|....+..... ...+.+..+.+.+|+..||| .++++.+
T Consensus 265 p~G~~~--~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG-~lyv~td 326 (347)
T 3das_A 265 PSGIAY--AEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGD-KLWLVTS 326 (347)
T ss_dssp EEEEEE--ETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETT-EEEEEEC
T ss_pred CcceEE--EcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCC-cEEEEEc
Confidence 111111 1455666555566776666654432 23344445789999999999 5555543
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.90 E-value=0.052 Score=45.67 Aligned_cols=143 Identities=12% Similarity=0.030 Sum_probs=82.8
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCC--------eeEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 042434 354 PKVLDLAVTPDGENLISVLSDKDIRILNLGTYA-ERVISEEHP--------ITSLSVSVDCKNFIVNLNSQEIHMWDVAG 424 (517)
Q Consensus 354 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~--------i~~~~~s~~~~~l~~~~~d~~i~~~d~~~ 424 (517)
..+..++|+|+|.+.++ .+|.++-.+..+.. ......... ...+.|.|+|.+.++ .||.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 36789999999986666 78888877765522 111111222 378999999988888 569888887633
Q ss_pred CCccce----EEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCc------eeEEec-CCCCCeeEEEecCCC
Q 042434 425 KWEKPF----KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSK------PIEILS-GHSMTVNCVSWNPKR 493 (517)
Q Consensus 425 ~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~-~h~~~v~~v~~~~~~ 493 (517)
...... ...+.. .-..+..+++.|+|.+.++. ||.++-+...++. ....+. ..-..-+.+.|.|++
T Consensus 117 ~~~~~Wl~~a~~vg~~-gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 117 SDTDNWIARATEVGSG-GWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp STTCCHHHHSEEEECS-SGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred CCCCceeccccEeccC-CCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 211111 111110 01125777889999877776 7776544332221 111111 223345567799998
Q ss_pred CcEEEEeeCCCcE
Q 042434 494 PKMLASASDDHTI 506 (517)
Q Consensus 494 ~~~l~s~~~dg~v 506 (517)
.+.+.. +|.+
T Consensus 194 -~l~~v~--~g~~ 203 (236)
T 1tl2_A 194 -TLFGVQ--GGKF 203 (236)
T ss_dssp -CEEEEE--TTEE
T ss_pred -cEEEEe--CCeE
Confidence 444444 7743
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.067 Score=48.90 Aligned_cols=192 Identities=8% Similarity=-0.058 Sum_probs=100.2
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEeCCC-CCceEEEEEe--C-CCCeEEEe-eCCCceeEEEEeCCCCeeEeeeCc--
Q 042434 279 DTKLLTCGNAEVLKLWDVETGICKHTFGDH-GFIVSSCAWF--P-DSKRLVCG-SSDTEKGIFMCDCDGNEIKAWRGT-- 351 (517)
Q Consensus 279 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~--~-~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~-- 351 (517)
+..++.++.||.|.-.|..+|+...++... ..++....-. + ++..++.. +.||. ++.++..+...+ +...
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~--l~a~~~~~G~~~-~~~~~~ 86 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGN--IYYFNAHQGLQK-LPLSIR 86 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTE--EEEEETTTEEEE-EEEEHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCE--EEEEECCCCcEE-eeeccc
Confidence 347888999999999999999999888643 1222221100 1 22333333 57888 888887654222 2111
Q ss_pred ---CCCceEE---EEE-----ccCCCEEEEEeCCCcEEEEECCCce-EEeeccCCCee--------EEEEc-----CCCC
Q 042434 352 ---RIPKVLD---LAV-----TPDGENLISVLSDKDIRILNLGTYA-ERVISEEHPIT--------SLSVS-----VDCK 406 (517)
Q Consensus 352 ---~~~~i~~---~~~-----~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~i~--------~~~~s-----~~~~ 406 (517)
...++.. ..+ ...+..+++|+.+|.+...|+.+++ ........+.. +.... ..+.
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 0111111 000 0145688999999999999999988 33333222110 11111 1235
Q ss_pred EEEEEeCCCeEEEEEcCCCCccceEEeCccc---CceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeE
Q 042434 407 NFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQ---NKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIE 475 (517)
Q Consensus 407 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 475 (517)
.++.+..+..+.+.+ +++..-...+..... ..........+.|+.+ +.++.||.|+-+|..+|+.+.
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777666666666 332111111111100 0000000011234666 446788999999988888765
No 339
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.78 E-value=0.11 Score=48.42 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=87.6
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEeCCC----CCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC-CC---------
Q 042434 278 DDTKLLTCGNAEVLKLWDVETGICKHTFGDH----GFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD-GN--------- 343 (517)
Q Consensus 278 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~-~~--------- 343 (517)
+|..++.+ .++.||.-++..+..-+.+... -..|..+..+|+|++++..+..+ |.+..+. +.
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~---V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNE---IFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSE---EEEEECCTTCSCCCCHHHH
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCe---EEEEEecCccccCcccccc
Confidence 44444443 2356666666543333333222 23578899999999999887664 4444443 11
Q ss_pred ---eeEeeeCc-----CCCceEEEEEccC---CCEEEEEeCCCcEEEEECCCce--EEee----------ccCCCeeEEE
Q 042434 344 ---EIKAWRGT-----RIPKVLDLAVTPD---GENLISVLSDKDIRILNLGTYA--ERVI----------SEEHPITSLS 400 (517)
Q Consensus 344 ---~~~~~~~~-----~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~--~~~~----------~~~~~i~~~~ 400 (517)
..+.+... ...+|..+.|+|- +..|++-..|+.|++||+.... .... .....+.+++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 11122221 2357999999995 5589999999999999998622 1111 1125688999
Q ss_pred EcCCCCEEEEEe--CCCeEEEE
Q 042434 401 VSVDCKNFIVNL--NSQEIHMW 420 (517)
Q Consensus 401 ~s~~~~~l~~~~--~d~~i~~~ 420 (517)
|.+++-.+.+.+ .+|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999887777755 77887654
No 340
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.78 E-value=0.1 Score=48.78 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=74.5
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCce---E------------Eeec-----cCCCeeEEEEcCC---CCEEEEE
Q 042434 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYA---E------------RVIS-----EEHPITSLSVSVD---CKNFIVN 411 (517)
Q Consensus 355 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~------------~~~~-----~~~~i~~~~~s~~---~~~l~~~ 411 (517)
.+..+..+|+|++++..+ +..|.|..+..+. . .... ...+|..+.|+|- +..+++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 578899999999998875 4578888876321 0 0111 2467999999994 5689999
Q ss_pred eCCCeEEEEEcCCCCccceEEe------CcccCceEEEeecCCCCCcEEEE--ecCCCcEEEE
Q 042434 412 LNSQEIHMWDVAGKWEKPFKYT------GHSQNKYVIRSCFGGLDGTFIAS--GSENSQIYIW 466 (517)
Q Consensus 412 ~~d~~i~~~d~~~~~~~~~~~~------~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~iw 466 (517)
..|+.|++||+......+..+. +.......+.+++|+.++-.|+. .+++|.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999976433333222 11111233556666778776666 4488888765
No 341
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.77 E-value=0.19 Score=45.28 Aligned_cols=174 Identities=8% Similarity=0.090 Sum_probs=98.3
Q ss_pred eCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCCceEEEEEccCCCEEEEEeCC--------------CcEEEEECC
Q 042434 318 FPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGENLISVLSD--------------KDIRILNLG 383 (517)
Q Consensus 318 ~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~ 383 (517)
++++..++.....+.-.++..+.++.....+.... +--++++|.+|+-+... ..|+..++.
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~-----~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT-----AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE-----EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc-----eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 34666666654322223888888876665554322 34557888888776543 367888887
Q ss_pred CceEEeeccCCCeeEEEEcCCCCEEEEEe----CCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecC
Q 042434 384 TYAERVISEEHPITSLSVSVDCKNFIVNL----NSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSE 459 (517)
Q Consensus 384 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 459 (517)
.......... ....+++++++++... ....|+..++.+. ....+..+.. ..++++++.|+-.+.
T Consensus 97 g~~~~~l~~~---~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs--~~~~lt~~~~-------~~~~~~g~~iy~t~~ 164 (302)
T 3s25_A 97 GHGSTVLDPD---PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE--EKKKIKNHYL-------FTCNTSDRYFYYNNP 164 (302)
T ss_dssp SCCCEEEECS---CEEEEEEETTEEEEEEESSSSCEEEEEEETTSC--CCEEEESSCC-------CCSEEETTEEEEECT
T ss_pred CCcceEeecC---CccEEEEeCCEEEEEeecCCCCceEEEEECCCC--CeEEEeCCCc-------eEeeEECCEEEEEeC
Confidence 7663333222 2236788888888775 2345666666543 3334443322 223677877775554
Q ss_pred -CCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeC-C-CcEEEeCCCC
Q 042434 460 -NSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASD-D-HTIRIWGPCQ 513 (517)
Q Consensus 460 -dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~-d-g~v~iw~~~~ 513 (517)
...|++.++..+.....+. +... ..++|++. .|+-... + ..|..-++..
T Consensus 165 g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~-~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 165 KNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDT-NVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp TTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETT-EEEEEEGGGTTEEEEECSSS
T ss_pred CCceEEEEECCCCCEEEEeC---CCcc-ceeeecCC-EEEEEEcCCCcEEEEEECCC
Confidence 5788888887665443333 2222 23558774 4443333 2 2444444443
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.69 E-value=0.23 Score=50.87 Aligned_cols=197 Identities=10% Similarity=0.094 Sum_probs=107.0
Q ss_pred CCCCeEEEEeCC----CeEEEEECCCCcEEEEe-C------CCCCceEEEEEeC-CCCeEEEeeCCCc----eeEEEEeC
Q 042434 277 PDDTKLLTCGNA----EVLKLWDVETGICKHTF-G------DHGFIVSSCAWFP-DSKRLVCGSSDTE----KGIFMCDC 340 (517)
Q Consensus 277 ~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~-~------~~~~~v~~i~~~~-~~~~l~~~~~d~~----v~i~~~~~ 340 (517)
.++..++.||.+ ..+.+||..+++....- . .....-.+++..+ ++..++.|+.++. -.++.+|.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 356667777653 36888998887654332 1 1111112333333 7778888876542 23888998
Q ss_pred CCCeeEeeeCcCCCc-eEEEEEccCCCEEEEEeCCC--cEEEEECCCceEEeec-------cCCCeeEEEEcCC-CCEEE
Q 042434 341 DGNEIKAWRGTRIPK-VLDLAVTPDGENLISVLSDK--DIRILNLGTYAERVIS-------EEHPITSLSVSVD-CKNFI 409 (517)
Q Consensus 341 ~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~-------~~~~i~~~~~s~~-~~~l~ 409 (517)
....-.......... -.+++...++..++.|+.++ .+.+||..+..-.... .......+.+..+ ++.++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 876544433222222 22333434788888887655 7999999887722221 1222333555555 66677
Q ss_pred EEeC--C-----CeEEEEEcCCCCc-cc---eEEeCc-ccCceEEEeecCCCCCcEEEEecCC--------CcEEEEecC
Q 042434 410 VNLN--S-----QEIHMWDVAGKWE-KP---FKYTGH-SQNKYVIRSCFGGLDGTFIASGSEN--------SQIYIWNRR 469 (517)
Q Consensus 410 ~~~~--d-----~~i~~~d~~~~~~-~~---~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~iwd~~ 469 (517)
.|+. + +.+..||+.+..- .. ...... ........++. ..++.+++.|+.+ ..+.+||..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY-ITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE-EETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE-eCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7765 2 4688999876520 00 111110 11111111111 1237778888743 469999998
Q ss_pred CCcee
Q 042434 470 NSKPI 474 (517)
Q Consensus 470 ~~~~~ 474 (517)
+.+-.
T Consensus 635 t~~W~ 639 (695)
T 2zwa_A 635 SETLT 639 (695)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 87644
No 343
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.27 E-value=0.91 Score=43.97 Aligned_cols=233 Identities=12% Similarity=0.039 Sum_probs=134.1
Q ss_pred EEEEeeCCCcEEEEEecCCCeeeEEEEeccC----------------------CCCEE--EEEEC---CCCCeEEEEeC-
Q 042434 236 YLASSSSDCSAIIWKVLEDSKLTLKHTLRSH----------------------QNPVS--FVAWS---PDDTKLLTCGN- 287 (517)
Q Consensus 236 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h----------------------~~~v~--~l~~s---~~~~~l~s~~~- 287 (517)
.+.+|+..|.|+|+-+.+...+..+..|... .+... .+++. -||++|+.-..
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 3667888899999988766544333332210 11111 22332 26788888764
Q ss_pred CCeEEEEECCCCcEEEEeC-CCCCceEEEEEe--CCCCeEEEeeCC-------Cce---------e-EEEEeCCCCeeEe
Q 042434 288 AEVLKLWDVETGICKHTFG-DHGFIVSSCAWF--PDSKRLVCGSSD-------TEK---------G-IFMCDCDGNEIKA 347 (517)
Q Consensus 288 dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~--~~~~~l~~~~~d-------~~v---------~-i~~~~~~~~~~~~ 347 (517)
+..|...++...++-+.+. .....+.++.|- |+..++++++.. |.. . ....|..+..+ .
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v-~ 230 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEM-A 230 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSE-E
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEE-E
Confidence 5678888998888776654 446678888886 677888887643 221 0 00112211111 1
Q ss_pred eeCcCCCceEEEEEccCCCEEEEEeCC--------------------------------------C--cEEEEECCC---
Q 042434 348 WRGTRIPKVLDLAVTPDGENLISVLSD--------------------------------------K--DIRILNLGT--- 384 (517)
Q Consensus 348 ~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------------------------------g--~i~i~d~~~--- 384 (517)
|+..-.+....+...++|.+.++.+.+ + .+.+.|.+.
T Consensus 231 ~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 231 FQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 110001122334556677777666553 1 355666654
Q ss_pred -ce--EEeeccCCCeeEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCc--------cceEEeCc-ccCceEEEeecCCCCC
Q 042434 385 -YA--ERVISEEHPITSLSVSVDCKNFIVNLN-SQEIHMWDVAGKWE--------KPFKYTGH-SQNKYVIRSCFGGLDG 451 (517)
Q Consensus 385 -~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~-d~~i~~~d~~~~~~--------~~~~~~~~-~~~~~~i~~~~~s~~~ 451 (517)
.. ...+........+.++|||+++++++. +.++.++|+..... ......+. ..+...+.. .|.++|
T Consensus 311 ~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt-~Fd~~G 389 (638)
T 3sbq_A 311 KDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHT-TFDGRG 389 (638)
T ss_dssp BCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEE-EECSSS
T ss_pred cCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEE-EECCCC
Confidence 22 344455566778899999999988876 77999999863100 00111111 112223333 447889
Q ss_pred cEEEEecCCCcEEEEecCC
Q 042434 452 TFIASGSENSQIYIWNRRN 470 (517)
Q Consensus 452 ~~l~~~~~dg~i~iwd~~~ 470 (517)
....+---|..|..|++..
T Consensus 390 ~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 390 NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEEEETTTTEEEEEEHHH
T ss_pred ceEeeeeecceEEEEeccH
Confidence 6666777899999999865
No 344
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.87 E-value=0.95 Score=40.67 Aligned_cols=194 Identities=12% Similarity=0.176 Sum_probs=120.0
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-CcEEEEe
Q 042434 227 FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET-GICKHTF 305 (517)
Q Consensus 227 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~ 305 (517)
+.-.+|..+.+|.-. ..++.|+|+++..++ +.+.- ...|..=.|-.+. .|+-.+ +..|.-|+++. ..+.+.|
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~kl---ks~~~-~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvF 143 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKM---KAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMF 143 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEE---EEEEC-SSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEE
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhh---cceec-CCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceee
Confidence 345688888888765 578999999866443 33332 4678788887554 444333 45899999974 4566666
Q ss_pred CCC----CCceEEEEEeCCCCeEEEeeC---CCce--eEEEEeCCCCeeEeeeCcCCCceEEEEEccCCC-----EEEEE
Q 042434 306 GDH----GFIVSSCAWFPDSKRLVCGSS---DTEK--GIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDGE-----NLISV 371 (517)
Q Consensus 306 ~~~----~~~v~~i~~~~~~~~l~~~~~---d~~v--~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~ 371 (517)
..| ...|..-..+++.++++..+- ++.+ .+-+|..+.+..+.+.++.. .. ..+-.+|+ .++.+
T Consensus 144 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa-~F--~~~~~~g~~~~~~lf~fa 220 (365)
T 2xzh_A 144 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA-SF--AQFKMEGNAEESTLFCFA 220 (365)
T ss_dssp ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEE-EE--EEECCTTCSSCEEEEEEE
T ss_pred ecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeeeee-ee--EEEecCCCCCCceEEEEE
Confidence 554 466777788888887765442 3321 15566666555555444331 11 22222222 33333
Q ss_pred eC---CCcEEEEECCCc---e--------EEeecc---CCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceE
Q 042434 372 LS---DKDIRILNLGTY---A--------ERVISE---EHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFK 431 (517)
Q Consensus 372 ~~---dg~i~i~d~~~~---~--------~~~~~~---~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~ 431 (517)
.. .+.+++.++... . ...+.. ..-..++.+++....++.-+.-|.+++||+.++ ..+..
T Consensus 221 ~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg-t~i~~ 296 (365)
T 2xzh_A 221 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYM 296 (365)
T ss_dssp EEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-CEEEE
T ss_pred EecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC-cEEEE
Confidence 22 258999998543 1 011111 234567888888889999999999999999887 44433
No 345
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.83 E-value=1.2 Score=41.72 Aligned_cols=181 Identities=12% Similarity=0.016 Sum_probs=93.5
Q ss_pred CEEEEeeCCCcEEEEEecC-CCeeeEEEEeccCCCCEEEEEECC-CCCeEEEEeCCC----eEEEEECCCCcEEEEeCC-
Q 042434 235 EYLASSSSDCSAIIWKVLE-DSKLTLKHTLRSHQNPVSFVAWSP-DDTKLLTCGNAE----VLKLWDVETGICKHTFGD- 307 (517)
Q Consensus 235 ~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~- 307 (517)
..|..|+..| +.+++... +..+...... .....|.+|++.| +...|.+++..| .|...+ ..|+.-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 3566777766 55555432 2344433221 2346799999998 334454454444 343332 23332222211
Q ss_pred -------------CCCceEEEEEeCC--CCeEEEeeCCCceeEEEEeCCCCeeEeeeC------------------cCCC
Q 042434 308 -------------HGFIVSSCAWFPD--SKRLVCGSSDTEKGIFMCDCDGNEIKAWRG------------------TRIP 354 (517)
Q Consensus 308 -------------~~~~v~~i~~~~~--~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~------------------~~~~ 354 (517)
....|.++++.|. ...+.+++..+. |+..+-.+..-..... ....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~gg--l~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQG--LFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTE--EEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCc--EEEEcCCCCCeEECcCccCCccccccccccccCCCCCC
Confidence 1125778888872 456666666555 7776665554333321 1123
Q ss_pred ceEEEEEccC-CCEEEEEeCCCcEEEEECCCce-EEeec-c------------CCCeeEEEEcCC-CCEEEEEeCCCeEE
Q 042434 355 KVLDLAVTPD-GENLISVLSDKDIRILNLGTYA-ERVIS-E------------EHPITSLSVSVD-CKNFIVNLNSQEIH 418 (517)
Q Consensus 355 ~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~-~------------~~~i~~~~~s~~-~~~l~~~~~d~~i~ 418 (517)
.+.++.+.|. ...++++..++.|...+-.... ..... . ...+.++.++|. ...+++++..+ |.
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~ 256 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IY 256 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EE
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EE
Confidence 5788999884 4455555555545444322222 11111 0 124788999985 46666666544 44
Q ss_pred EEE
Q 042434 419 MWD 421 (517)
Q Consensus 419 ~~d 421 (517)
..+
T Consensus 257 ~s~ 259 (394)
T 3b7f_A 257 RMD 259 (394)
T ss_dssp EEE
T ss_pred EeC
Confidence 443
No 346
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.80 E-value=2.1 Score=44.21 Aligned_cols=273 Identities=9% Similarity=-0.001 Sum_probs=148.8
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEecc----CCCCEEEEEECCCCCeEEEEeCCCeEEEEECC
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRS----HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE 297 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~----h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 297 (517)
...|.++...++|.+.+ |+.+| +..++..++ .+.... ... ....|.++...+++..|..|+. +-+..+|..
T Consensus 145 ~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~-~~~~~~-~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~ 219 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNG-KFEGIP-LPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPS 219 (758)
T ss_dssp CSCEEEEEECTTCCEEE-EETTE-EEEEETTTT-EEEEEC-CCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETT
T ss_pred CCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCC-ceEEec-CCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCC
Confidence 35688888888887554 44544 667776433 221111 111 1234888888777765555554 458889987
Q ss_pred CCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCeeEeeeC-------cCCCceEEEEEccCCCEEEE
Q 042434 298 TGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNEIKAWRG-------TRIPKVLDLAVTPDGENLIS 370 (517)
Q Consensus 298 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~ 370 (517)
+++...........|.++...++|.+.+ |+.+| ++.++..+.....+.. .....|.++....+|... +
T Consensus 220 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~G---l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-i 294 (758)
T 3ott_A 220 TGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDNG---LYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-L 294 (758)
T ss_dssp TTEEEEEEEEEEEEEEEEEECTTCCEEE-EETTE---EEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-E
T ss_pred CCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCCc---eeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-E
Confidence 7654322111234578887777776554 44555 7888877655544321 122358888888777644 4
Q ss_pred EeCCCcEEEEECCCceEEee-------ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-cceEEeCc----ccC
Q 042434 371 VLSDKDIRILNLGTYAERVI-------SEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE-KPFKYTGH----SQN 438 (517)
Q Consensus 371 ~~~dg~i~i~d~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~----~~~ 438 (517)
|+..| +.++.....-.... .....|.++....+|... +|+.+ .+..++..++.. ....+... ...
T Consensus 295 GT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~ 371 (758)
T 3ott_A 295 GTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGGAN-GLIRFTDPAGERHDAIWYRMGDKTYPLS 371 (758)
T ss_dssp EESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEETT-EEEEESCTTSSCCCCEEECTTCSSSCCS
T ss_pred EeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEE-EeeCC-cceeecccccccceeEEeccCCcCCCCC
Confidence 55556 55443322111110 123457888877777654 44544 466676543211 11112110 011
Q ss_pred ceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEec-C-----CCCCeeEEEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 439 KYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILS-G-----HSMTVNCVSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 439 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~-----h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
...+.++.-..+|++- .|+ ++-|..||..+++...... . ....|.++.-.+++ .|..|+..+-|.+++.
T Consensus 372 ~~~v~~i~~d~~g~lW-igt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigT~~~Gl~~~~~ 446 (758)
T 3ott_A 372 HNRIRHIYEDKEQQLW-IAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAG--QLWISTCLGGIFVVDK 446 (758)
T ss_dssp CSCEEEEEECTTSCEE-EEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTS--EEEEEESSSCEEEEEH
T ss_pred CCceEEEEECCCCCEE-EEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCC--CEEEEECCCceEEEcc
Confidence 1124444445666544 455 3569999988776433211 1 13468888887777 3555666555666653
No 347
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.48 E-value=1.7 Score=40.81 Aligned_cols=233 Identities=11% Similarity=0.137 Sum_probs=133.6
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCC-CcEEEEe
Q 042434 227 FVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVET-GICKHTF 305 (517)
Q Consensus 227 ~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~ 305 (517)
+.-.+|..+.+|.-. ..++.|+|+++..++ +.+.. ...|..=.|-.+. .|+..+ +..|.-|++.. ..+.+.|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~kl---ks~~~-~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvF 142 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKM---KAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMF 142 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEE---EEEEC-SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhh---cceec-CCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhhe
Confidence 455788888888765 679999999766443 33333 3456666776443 444433 45899999964 3566667
Q ss_pred CCC----CCceEEEEEeCCCCeEEEeeC---CCce--eEEEEeCCCCeeEeeeCcCCCceEEEEEccCC---CEEEEEeC
Q 042434 306 GDH----GFIVSSCAWFPDSKRLVCGSS---DTEK--GIFMCDCDGNEIKAWRGTRIPKVLDLAVTPDG---ENLISVLS 373 (517)
Q Consensus 306 ~~~----~~~v~~i~~~~~~~~l~~~~~---d~~v--~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~ 373 (517)
..| ...|..-..+++.++++..+- ++.+ .+-+|..+.+....+.++. .....+.+..+. ..++.+..
T Consensus 143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGha-a~F~~~~~~g~~~~~~lf~fa~r 221 (494)
T 1bpo_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA-ASFAQFKMEGNAEESTLFCFAVR 221 (494)
T ss_dssp ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSE-EEEEEEECTTCSSEEEEEEEEEC
T ss_pred ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeee-eeeEEEecCCCCCCceEEEEEEe
Confidence 654 566777888888888775432 3321 1556666655544444433 122222221111 13333333
Q ss_pred ---CCcEEEEECCCc---e--------EEeec---cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcc
Q 042434 374 ---DKDIRILNLGTY---A--------ERVIS---EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHS 436 (517)
Q Consensus 374 ---dg~i~i~d~~~~---~--------~~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 436 (517)
.+.++|.++... . ...+. ...-..++.+++....+..-+.-|.+++||+.++ ..+..-.-..
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg-t~i~~nrIs~ 300 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYMNRISG 300 (494)
T ss_dssp STTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-CEEEEEECCS
T ss_pred cCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc-eeeeeecccC
Confidence 378999998543 0 01111 1234567888888899999999999999999887 4444333222
Q ss_pred cCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC
Q 042434 437 QNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS 471 (517)
Q Consensus 437 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 471 (517)
...+. .+. .....-+++....|.|.--.+...
T Consensus 301 ~~iF~--t~~-~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 301 ETIFV--TAP-HEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp SCEEE--EEE-ETTTTEEEEEETTCEEEEEEECTT
T ss_pred CceEE--ecc-cCCCCcEEEEccCceEEEEEEccc
Confidence 22221 111 122223444445666555554443
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.45 E-value=0.64 Score=47.55 Aligned_cols=194 Identities=13% Similarity=0.064 Sum_probs=99.3
Q ss_pred CCCCeEEEeeCCC--ceeEEEEeCCCCeeEeee-C------cCCCceEEEEEcc-CCCEEEEEeCC------CcEEEEEC
Q 042434 319 PDSKRLVCGSSDT--EKGIFMCDCDGNEIKAWR-G------TRIPKVLDLAVTP-DGENLISVLSD------KDIRILNL 382 (517)
Q Consensus 319 ~~~~~l~~~~~d~--~v~i~~~~~~~~~~~~~~-~------~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~ 382 (517)
.++..++.|+.++ .-.++.+|.....-.... . .....-.+++..+ ++..++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 4566667776532 112788887765544433 1 1111123344443 77777777754 35889999
Q ss_pred CCceEEee---ccCCCeeEEEEcCCCCEEEEEeCCC--eEEEEEcCCC-CccceEEeCcccCceEEEeecCCCC-CcEEE
Q 042434 383 GTYAERVI---SEEHPITSLSVSVDCKNFIVNLNSQ--EIHMWDVAGK-WEKPFKYTGHSQNKYVIRSCFGGLD-GTFIA 455 (517)
Q Consensus 383 ~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~d~--~i~~~d~~~~-~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~ 455 (517)
.+..-... .....-.+++...+++.++.|+.++ .+.+||..+. |.................++.+..+ +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 88662211 1111223344434788888887654 6899998654 2211110001111111111111223 67777
Q ss_pred EecC--C-----CcEEEEecCCCc------e--eEEec-CCCCCeeEEEecCCCCcEEEEeeCC--------CcEEEeCC
Q 042434 456 SGSE--N-----SQIYIWNRRNSK------P--IEILS-GHSMTVNCVSWNPKRPKMLASASDD--------HTIRIWGP 511 (517)
Q Consensus 456 ~~~~--d-----g~i~iwd~~~~~------~--~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~d--------g~v~iw~~ 511 (517)
.|+. + ..+.+||+.+.+ . +.... ........ +...++ .+++.||.+ ..|.+||+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~-~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~ 633 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI-KYITPR-KLLIVGGTSPSGLFDRTNSIISLDP 633 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEE-EEEETT-EEEEECCBCSSCCCCTTTSEEEEET
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceE-EEeCCC-EEEEECCccCCCCCCCCCeEEEEEC
Confidence 7776 2 358999988776 1 11111 11112222 333335 678888743 45888888
Q ss_pred CCC
Q 042434 512 CQS 514 (517)
Q Consensus 512 ~~~ 514 (517)
.+.
T Consensus 634 ~t~ 636 (695)
T 2zwa_A 634 LSE 636 (695)
T ss_dssp TTT
T ss_pred CCC
Confidence 754
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.11 E-value=1.7 Score=38.62 Aligned_cols=221 Identities=11% Similarity=0.028 Sum_probs=109.4
Q ss_pred CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEe
Q 042434 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKA 347 (517)
Q Consensus 269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~ 347 (517)
.|..++.... ..+... ||.|..|-....-.+..-......|..++...+. .++. . ||. +|.|-.... ++-.
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~--v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGE--VIAWGGNEDGQTTV 96 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTE--EEEEECCTTSTTCC
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCE--EEEeeCCCCCCCCC
Confidence 5666666533 222234 8999999754321111000112356666665332 3333 4 787 888876521 1111
Q ss_pred eeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 042434 348 WRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGK 425 (517)
Q Consensus 348 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~ 425 (517)
.......|..++...+ ..+... +|.|+.|-....- .........+..++...+ +.++-. +|.++.|-....
T Consensus 97 -P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~ 169 (282)
T 3qhy_B 97 -PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYF 169 (282)
T ss_dssp -CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTT
T ss_pred -CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCC
Confidence 1111135666665544 344445 9999999765432 111122345666655443 333333 799999976543
Q ss_pred CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCCceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCc
Q 042434 426 WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHT 505 (517)
Q Consensus 426 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~ 505 (517)
....... ........+.+ . ....++. .||.|+.|-....-.+..-......|..|+..... .++.. ||.
T Consensus 170 gqlg~p~-~~~~~v~~i~~---G-~~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h--~~al~--~g~ 238 (282)
T 3qhy_B 170 GQTTVPA-EAQSGVDDVAG---G-IFHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY--SLALK--NGK 238 (282)
T ss_dssp STTSCCG-GGGSSEEEEEE---C-SSEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC--EEEEE--TTE
T ss_pred CCCCCce-ecCCCeEEEEe---c-CCEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE--EEEEE--CCE
Confidence 2221110 01112222222 2 2233444 59999999754422111111112457788776554 33333 999
Q ss_pred EEEeCCCCCC
Q 042434 506 IRIWGPCQSS 515 (517)
Q Consensus 506 v~iw~~~~~~ 515 (517)
|..|--....
T Consensus 239 v~~wG~n~~g 248 (282)
T 3qhy_B 239 VIAWGSSRTA 248 (282)
T ss_dssp EEEESTTCCC
T ss_pred EEEecCCCCc
Confidence 9999876543
No 350
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.95 E-value=1.7 Score=47.43 Aligned_cols=217 Identities=10% Similarity=0.026 Sum_probs=122.5
Q ss_pred CCeEEEEECCCCcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCCe-eEeeeCcCCCceEEEEEccCCC
Q 042434 288 AEVLKLWDVETGICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGNE-IKAWRGTRIPKVLDLAVTPDGE 366 (517)
Q Consensus 288 dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~ 366 (517)
..+|.|.|+.++..+.+.. -..-+.-.+|..+.++.-. ..+ +-++++..+. ++...... .|.--.|-.+..
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~--lQiFnl~~k~klks~~~~e--~VvfWkWis~~~ 118 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKT--LQIFNIEMKSKMKAHTMTD--DVTFWKWISLNT 118 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCe--EEEeehHHhhhhcccccCC--CceEEEecCCCe
Confidence 3378888888765432211 1112344577777666654 445 6666665432 23222222 466666654443
Q ss_pred EEEEEeCCCcEEEEECCCce--E-----EeeccCCCeeEEEEcCCCCEEEEEe-------CCCeEEEEEcCCCCccceEE
Q 042434 367 NLISVLSDKDIRILNLGTYA--E-----RVISEEHPITSLSVSVDCKNFIVNL-------NSQEIHMWDVAGKWEKPFKY 432 (517)
Q Consensus 367 ~l~~~~~dg~i~i~d~~~~~--~-----~~~~~~~~i~~~~~s~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~ 432 (517)
. +.. .+..|+-|++.... . ........|.....+++.++++..+ ..|.+.+|....+ ..+.+
T Consensus 119 l-~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~i 194 (1630)
T 1xi4_A 119 V-ALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPI 194 (1630)
T ss_pred e-EEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc--cchhh
Confidence 3 222 34569999996532 1 1111245678888899999977554 2478899998653 44556
Q ss_pred eCcccCceEEEeecCCCCCcEEEEecC---CCcEEEEecCCC---ceeE------EecC---CCCCeeEEEecCCCCcEE
Q 042434 433 TGHSQNKYVIRSCFGGLDGTFIASGSE---NSQIYIWNRRNS---KPIE------ILSG---HSMTVNCVSWNPKRPKML 497 (517)
Q Consensus 433 ~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~---~~~~------~~~~---h~~~v~~v~~~~~~~~~l 497 (517)
.||...-..+..-...+....++.+.. .+.++|.++... .+.. .+.. ..+-..++..++.. .++
T Consensus 195 egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~i 273 (1630)
T 1xi4_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVV 273 (1630)
T ss_pred hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc-CEE
Confidence 666554332222221222233333222 378999887543 1111 1111 12334567777776 588
Q ss_pred EEeeCCCcEEEeCCCCCCCC
Q 042434 498 ASASDDHTIRIWGPCQSSEV 517 (517)
Q Consensus 498 ~s~~~dg~v~iw~~~~~~~v 517 (517)
...+.-|.|.++|+.++..+
T Consensus 274 y~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 274 FLITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred EEEecCceEEEEecccchhh
Confidence 88899999999999998753
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.54 E-value=2.4 Score=37.63 Aligned_cols=238 Identities=12% Similarity=0.047 Sum_probs=117.4
Q ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEecCCCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEE
Q 042434 224 EVWFVQFSNNGEYLASSSSDCSAIIWKVLEDSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKH 303 (517)
Q Consensus 224 ~v~~~~~s~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 303 (517)
.|..++....- .++. . ||.|..|-.....++... ......|..++...+.. ++. . ||.|..|-....-.+.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p---~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMP---AATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCC---GGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTC
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCC---ccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCC
Confidence 45555554432 2333 4 888988876543322110 11123566777654432 233 4 8999999754321111
Q ss_pred EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCCC-eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEEC
Q 042434 304 TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDGN-EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNL 382 (517)
Q Consensus 304 ~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 382 (517)
.-..-...|..++...+ ..+.-. +|. +|.|-.... ++. ........|..++..... .+.-. ||.++.|-.
T Consensus 96 ~P~~~~~~v~~ia~G~~--hs~al~-~G~--v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~ 166 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGAW--ASYALK-DGK--VIAWGDDSDGQTT-VPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGD 166 (282)
T ss_dssp CCGGGSSSEEEEEEETT--EEEEEE-TTE--EEEEECCTTSTTS-CCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEEC
T ss_pred CCcccCCCeEEEECcCC--EEEEEe-CCe--EEEecCCCCCcCC-CCccCCCCeEEEEcccCE--EEEEE-CCEEEEecC
Confidence 00011346777776644 333334 887 888876531 111 111122356666654433 33334 799999976
Q ss_pred CCce--EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCccceEEeCcccCceEEEeecCCCCCcEEEEecCC
Q 042434 383 GTYA--ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSEN 460 (517)
Q Consensus 383 ~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 460 (517)
.... .........+..++...+ +.++- .+|.++.|-.....+.-.... .......+.+ ..+ ..++. . |
T Consensus 167 n~~gqlg~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~-~~~~v~~i~~---G~~-h~~al-~-~ 236 (282)
T 3qhy_B 167 NYFGQTTVPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTE-ALSGVSAIAS---GEW-YSLAL-K-N 236 (282)
T ss_dssp CTTSTTSCCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGG-GGSSCCEEEE---CSS-CEEEE-E-T
T ss_pred CCCCCCCCceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcc-cCCCceEEEc---CCC-EEEEE-E-C
Confidence 5432 111112345666665544 32333 599999997654322211111 1112222322 222 23333 3 9
Q ss_pred CcEEEEecCCCceeEEecCCCCCeeEEEecCCC
Q 042434 461 SQIYIWNRRNSKPIEILSGHSMTVNCVSWNPKR 493 (517)
Q Consensus 461 g~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~~ 493 (517)
|.|+.|-.....++.. ...|.+|+-....
T Consensus 237 g~v~~wG~n~~gq~~v----~~~v~~iaaG~~h 265 (282)
T 3qhy_B 237 GKVIAWGSSRTAPSSV----QSGVSSIEAGPNA 265 (282)
T ss_dssp TEEEEESTTCCCCGGG----SSCEEEEEECSSC
T ss_pred CEEEEecCCCCccccC----CCCcEEEEECcCe
Confidence 9999997655433322 2357777776654
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=94.38 E-value=3.8 Score=39.31 Aligned_cols=122 Identities=9% Similarity=0.001 Sum_probs=69.1
Q ss_pred ccCcEEEEEECCCCC-EEEEeeCCCcEEEEEecCCCeeeEEEEec---------cCCCCEEEEEECCC----CCeEEEEe
Q 042434 221 HKNEVWFVQFSNNGE-YLASSSSDCSAIIWKVLEDSKLTLKHTLR---------SHQNPVSFVAWSPD----DTKLLTCG 286 (517)
Q Consensus 221 h~~~v~~~~~s~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~---------~h~~~v~~l~~s~~----~~~l~s~~ 286 (517)
--...+.++|.|+|. .|+.+...|.|++++.........+..+. ........|+|+|+ +.+.++-+
T Consensus 12 gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 12 GLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp EESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 345678999999996 34445678999998643221111111111 12457889999996 43333332
Q ss_pred C--C----------CeEEEEECCC----------CcEEEEeC--CCCCceEEEEEeCCCCeEEEeeCCCc----------
Q 042434 287 N--A----------EVLKLWDVET----------GICKHTFG--DHGFIVSSCAWFPDSKRLVCGSSDTE---------- 332 (517)
Q Consensus 287 ~--d----------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~i~~~~~~~~l~~~~~d~~---------- 332 (517)
. + ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..+.
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~ 171 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDG 171 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTT
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccC
Confidence 2 1 1344465542 12222222 22334578999999987777654331
Q ss_pred -----eeEEEEeCCC
Q 042434 333 -----KGIFMCDCDG 342 (517)
Q Consensus 333 -----v~i~~~~~~~ 342 (517)
-+|+.++.++
T Consensus 172 ~~~~~GkIlRi~~dg 186 (463)
T 2wg3_C 172 LSDFTGSVLRLDVDT 186 (463)
T ss_dssp CCSCTTEEEEEBCCC
T ss_pred cCCCCeeEEEEECCC
Confidence 2377777776
No 353
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=93.73 E-value=6.8 Score=39.91 Aligned_cols=238 Identities=11% Similarity=0.079 Sum_probs=121.9
Q ss_pred EEEE-ECCCCCeEEEE-eCCC----eEEEEECCCCcEEE-EeC-CCCC------ceEEEEEeCCCCeEEEeeCC------
Q 042434 271 SFVA-WSPDDTKLLTC-GNAE----VLKLWDVETGICKH-TFG-DHGF------IVSSCAWFPDSKRLVCGSSD------ 330 (517)
Q Consensus 271 ~~l~-~s~~~~~l~s~-~~dg----~i~iwd~~~~~~~~-~~~-~~~~------~v~~i~~~~~~~~l~~~~~d------ 330 (517)
..+. ++|++++++.+ |..| .++++|+.+++.+. .+. ..+. ....++|.. ...++.+...
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCBC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEEC-CCEEEEEeCCCCCCcC
Confidence 3344 78898877654 3333 79999999997653 121 0001 113458874 4444443211
Q ss_pred --C-ceeEEEEeCCCC---eeEeeeCcCCCceEEEEEccCCCE-----EEEEeC---CCcEEEEECCC--ceEEeeccCC
Q 042434 331 --T-EKGIFMCDCDGN---EIKAWRGTRIPKVLDLAVTPDGEN-----LISVLS---DKDIRILNLGT--YAERVISEEH 394 (517)
Q Consensus 331 --~-~v~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~-----l~~~~~---dg~i~i~d~~~--~~~~~~~~~~ 394 (517)
+ .-+++.|...+. ....+.............++++++ +++.+. ...+.+.|... +.........
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 290 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPS 290 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCT
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCC
Confidence 1 134888877643 223344333333345556677662 343332 24566667653 2212222121
Q ss_pred CeeEEEEcCCCCEEEEE----------eCCCeEEEEEcCCCC------ccceEEeCcccCceEEEeecCCCCCcEEEEec
Q 042434 395 PITSLSVSVDCKNFIVN----------LNSQEIHMWDVAGKW------EKPFKYTGHSQNKYVIRSCFGGLDGTFIASGS 458 (517)
Q Consensus 395 ~i~~~~~s~~~~~l~~~----------~~d~~i~~~d~~~~~------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 458 (517)
. ..+..+.++..++.. ...+.|...|+.+.. .....+..+.. ...+..+.+..+ .++++..
T Consensus 291 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~-~l~~~~~ 367 (711)
T 4hvt_A 291 D-ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA-NEVFNFISTTKD-RVFLATY 367 (711)
T ss_dssp T-CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT-TEEEEEEEECSS-CEEEEEE
T ss_pred c-ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC-CCeEEEEEEECC-EEEEEEE
Confidence 1 122334455444432 135678888886531 12222222322 223444444444 5777777
Q ss_pred CCC--cEEEEecCCCc-eeEE-ecCC-CCCeeEEEecCCCCcEEEEeeCC---CcEEEeCCC
Q 042434 459 ENS--QIYIWNRRNSK-PIEI-LSGH-SMTVNCVSWNPKRPKMLASASDD---HTIRIWGPC 512 (517)
Q Consensus 459 ~dg--~i~iwd~~~~~-~~~~-~~~h-~~~v~~v~~~~~~~~~l~s~~~d---g~v~iw~~~ 512 (517)
.++ .|+++|+.+++ .... +... .+.+......+++..++++.+.. +.+..+++.
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 776 47788877664 2333 2222 35677777777776666666543 567777765
No 354
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.39 E-value=6.2 Score=38.37 Aligned_cols=229 Identities=9% Similarity=0.067 Sum_probs=128.6
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEeCCCC-------------------------Cc--eEEEEEeC---CCCeEEEeeCCC
Q 042434 282 LLTCGNAEVLKLWDVETGICKHTFGDHG-------------------------FI--VSSCAWFP---DSKRLVCGSSDT 331 (517)
Q Consensus 282 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------~~--v~~i~~~~---~~~~l~~~~~d~ 331 (517)
+.||+..|.|+|+-+.+++.+..+.... +. -..+++.. ||++++.-...+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 5688899999999999998887653110 00 11233322 566777766543
Q ss_pred ceeEEEEeCCCCee-EeeeCcCCCceEEEEEc--cCCCEEEEEeC-------CCcE------------EEEECCCce-EE
Q 042434 332 EKGIFMCDCDGNEI-KAWRGTRIPKVLDLAVT--PDGENLISVLS-------DKDI------------RILNLGTYA-ER 388 (517)
Q Consensus 332 ~v~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~--~~~~~l~~~~~-------dg~i------------~i~d~~~~~-~~ 388 (517)
. ++-..+++.-.. +.........+..+.+- |+..+++.++. ||.. ...|..+.+ ..
T Consensus 153 ~-RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 153 S-RVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp T-EEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred c-ceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 2 477777775333 23334444578888886 67778887765 2221 112333322 11
Q ss_pred eeccCCCeeEEEEcCCCCEEEEEeCCC---------------eEEEEEcCC--------CCc-----cceEEeCcc----
Q 042434 389 VISEEHPITSLSVSVDCKNFIVNLNSQ---------------EIHMWDVAG--------KWE-----KPFKYTGHS---- 436 (517)
Q Consensus 389 ~~~~~~~i~~~~~s~~~~~l~~~~~d~---------------~i~~~d~~~--------~~~-----~~~~~~~~~---- 436 (517)
...-......+...+++++.++.+.+. .+.++++.. ... .+..+.+..
T Consensus 232 Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 232 QVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 111223444455677888877665432 255555421 000 111222211
Q ss_pred c-C-ceE------EEeecCCCCCcEEEEec-CCCcEEEEecCCC------ce-------eEEecCCCCCeeEEEecCCCC
Q 042434 437 Q-N-KYV------IRSCFGGLDGTFIASGS-ENSQIYIWNRRNS------KP-------IEILSGHSMTVNCVSWNPKRP 494 (517)
Q Consensus 437 ~-~-~~~------i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~------~~-------~~~~~~h~~~v~~v~~~~~~~ 494 (517)
. . ... ...+-.+|||+++++++ -+.++.++|++.- +. ..... -.-.....+|.++|
T Consensus 312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G- 389 (638)
T 3sbq_A 312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG- 389 (638)
T ss_dssp CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-
T ss_pred CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-
Confidence 0 0 000 11223378999988765 4678999998742 11 22222 23456788999999
Q ss_pred cEEEEeeCCCcEEEeCCCC
Q 042434 495 KMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 495 ~~l~s~~~dg~v~iw~~~~ 513 (517)
+...|.--|..|.-|++..
T Consensus 390 ~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 390 NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEEEETTTTEEEEEEHHH
T ss_pred ceEeeeeecceEEEEeccH
Confidence 6777777899999999754
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.10 E-value=7.7 Score=36.19 Aligned_cols=263 Identities=11% Similarity=0.038 Sum_probs=124.8
Q ss_pred cCcEEEEEECC--CCCEEEEeeCCC--cEEEEEe-cCCCeeeEEEE---ecc--------CCCCEEEEEECCC--CCeEE
Q 042434 222 KNEVWFVQFSN--NGEYLASSSSDC--SAIIWKV-LEDSKLTLKHT---LRS--------HQNPVSFVAWSPD--DTKLL 283 (517)
Q Consensus 222 ~~~v~~~~~s~--~~~~l~t~~~dg--~i~iw~~-~~~~~~~~~~~---~~~--------h~~~v~~l~~s~~--~~~l~ 283 (517)
...|.++++.| ++.+.+ ++..| --.||.. +.+..+..... +.. +...|.++++.|. ...+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45799999998 444444 44444 1123433 33344433221 110 1125788999872 45666
Q ss_pred EEeCCCeEEEEECCCCcEEEEeC-------------------CCCCceEEEEEeCC-CCeEEEeeCCCceeEEEEeCCCC
Q 042434 284 TCGNAEVLKLWDVETGICKHTFG-------------------DHGFIVSSCAWFPD-SKRLVCGSSDTEKGIFMCDCDGN 343 (517)
Q Consensus 284 s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~~~v~~i~~~~~-~~~l~~~~~d~~v~i~~~~~~~~ 343 (517)
+++..+.|...+ ..|+.-..+. .....+.++.+.|. ...++.+..++. ++..+..+.
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~gg--l~~s~DgG~ 209 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGG--VFESTDAGT 209 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBE--EEEESSTTS
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCC--EEEECCCCC
Confidence 666666554443 2233222221 11245788999873 455565655444 666655554
Q ss_pred eeEeeeCcC------------CCceEEEEEccC-CCEEEEEeCCCcEEEEECCCce-EEeec--cC---CCeeEEEEcC-
Q 042434 344 EIKAWRGTR------------IPKVLDLAVTPD-GENLISVLSDKDIRILNLGTYA-ERVIS--EE---HPITSLSVSV- 403 (517)
Q Consensus 344 ~~~~~~~~~------------~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~-~~~~~--~~---~~i~~~~~s~- 403 (517)
.-....... ...+.++.+.|. ...++++...+ |...+-.... ..... .. ..+..+.++|
T Consensus 210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETTTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCCCCcceECCCCCCCCCccceEEEEECCC
Confidence 443332110 124788999986 35666666544 5555433332 11111 11 2356778876
Q ss_pred CCCEEEEEeC-----------CCeEEEEEcCCCCccceEEe-CcccC-ce--E-EEeecCCC-CCcEEEEecCCCcEEEE
Q 042434 404 DCKNFIVNLN-----------SQEIHMWDVAGKWEKPFKYT-GHSQN-KY--V-IRSCFGGL-DGTFIASGSENSQIYIW 466 (517)
Q Consensus 404 ~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~-~~~~~-~~--~-i~~~~~s~-~~~~l~~~~~dg~i~iw 466 (517)
+...+.+++. ++...+|........-..+. +.... .+ . ...+.++| +...|+.++.++.|+.-
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S 368 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS 368 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 3444555532 23345555443212212211 11110 00 0 01222344 33446666666665543
Q ss_pred ecCCCceeEEecCCCCCeeEEEec
Q 042434 467 NRRNSKPIEILSGHSMTVNCVSWN 490 (517)
Q Consensus 467 d~~~~~~~~~~~~h~~~v~~v~~~ 490 (517)
+ ..|+.-..+..+-..+.+|+|.
T Consensus 369 ~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 369 A-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp S-STTSBCEEEECSCSCEEEEEEE
T ss_pred C-CCCCCceEcccCCCCeeEEEEe
Confidence 2 3344444444444567777764
No 356
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.09 E-value=0.54 Score=42.87 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=66.1
Q ss_pred CEEEEEeCCCcEEEEECCCce-EEeeccC--CCeeEEEE--cC-CCCEEEEE-eCCCeEEEEEcCCCCccceEEeCccc-
Q 042434 366 ENLISVLSDKDIRILNLGTYA-ERVISEE--HPITSLSV--SV-DCKNFIVN-LNSQEIHMWDVAGKWEKPFKYTGHSQ- 437 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~-~~~~~~~--~~i~~~~~--s~-~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~- 437 (517)
..+++++.||.|+-+|..+++ ....... .++....- .+ ++..++.. +.||.+..++..++ .....+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G-~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG-LQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE-EEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC-cEEeeeccccce
Confidence 368899999999999998888 3333222 22221110 01 22333343 68999999998765 22222221110
Q ss_pred CceEEEe--ec-C-----CCCCcEEEEecCCCcEEEEecCCCceeEEecC
Q 042434 438 NKYVIRS--CF-G-----GLDGTFIASGSENSQIYIWNRRNSKPIEILSG 479 (517)
Q Consensus 438 ~~~~i~~--~~-~-----s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 479 (517)
....+.. .. . ...+..+++|+.+|.++..|+.+|+.+..+..
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 0000110 00 0 01466889999999999999999999998863
No 357
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=90.70 E-value=0.26 Score=33.71 Aligned_cols=30 Identities=10% Similarity=0.113 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHhhhcCee
Q 042434 17 YEFVRVVVQCLYSLGYQKSASCLESESGVS 46 (517)
Q Consensus 17 ~~~~~li~q~L~~~g~~~s~~~l~~Esg~~ 46 (517)
.-+..||-.||.-+||+-|+.+|+-|+|.+
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 347789999999999999999999999997
No 358
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=90.05 E-value=11 Score=34.18 Aligned_cols=198 Identities=10% Similarity=0.041 Sum_probs=110.3
Q ss_pred cCcEEEEEECCCCCEEEEeeCCCcEEEEEec---CCC---eeeEEEE---eccCCCCEEEE-EECC--CCCeEEEEeCCC
Q 042434 222 KNEVWFVQFSNNGEYLASSSSDCSAIIWKVL---EDS---KLTLKHT---LRSHQNPVSFV-AWSP--DDTKLLTCGNAE 289 (517)
Q Consensus 222 ~~~v~~~~~s~~~~~l~t~~~dg~i~iw~~~---~~~---~~~~~~~---~~~h~~~v~~l-~~s~--~~~~l~s~~~dg 289 (517)
.+.+..+........|+.-+..|.++-.... ... ...++.. +. ....|.++ ...+ +..+++.++.+|
T Consensus 41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 3444444444444556655667776655432 110 1111111 11 23445554 4432 578999999999
Q ss_pred eEEEEECCCCc-------EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC--CCe--------eEeeeCcC
Q 042434 290 VLKLWDVETGI-------CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD--GNE--------IKAWRGTR 352 (517)
Q Consensus 290 ~i~iwd~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~--~~~--------~~~~~~~~ 352 (517)
.++.-.+..-. ....+.. ...+..+........++..+..|. ++.+... .-+ ...+....
T Consensus 120 ~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~--~~rf~~~~~eip~~gr~a~Gv~~i~L~~ 196 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQ--SIRFSATDEALRPMGRATSGVQGMRFNI 196 (327)
T ss_dssp EEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSE--EEEEECCTTTSCCCCTTSBCEESSCCCT
T ss_pred EEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCe--EEEEECcccccCcCCcCCCCeeeecCCC
Confidence 99998764421 1112323 445555555556677888888887 6666554 211 11122223
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--------EEee---ccCCCeeEEEEcCCCCEEEEEeCCCeEEEEE
Q 042434 353 IPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--------ERVI---SEEHPITSLSVSVDCKNFIVNLNSQEIHMWD 421 (517)
Q Consensus 353 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~---~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d 421 (517)
...|.++...+++..++..+..|.++.-.+.... .... .....+..+....+...++..+.+|.+..++
T Consensus 197 ~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~ 276 (327)
T 3uc1_A 197 DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTA 276 (327)
T ss_dssp TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEe
Confidence 3467777777777789999999999888764322 1111 1123444444444555677777777777776
Q ss_pred cC
Q 042434 422 VA 423 (517)
Q Consensus 422 ~~ 423 (517)
..
T Consensus 277 ~~ 278 (327)
T 3uc1_A 277 AR 278 (327)
T ss_dssp GG
T ss_pred hh
Confidence 63
No 359
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=87.79 E-value=14 Score=32.51 Aligned_cols=192 Identities=10% Similarity=0.007 Sum_probs=109.3
Q ss_pred CcEEEEEECCCCCEEEEeeCCCcEEEE---EecCCCeeeEEEEeccCCCCEEEEEECC--CCCeEEEEeCCCeEEEEECC
Q 042434 223 NEVWFVQFSNNGEYLASSSSDCSAIIW---KVLEDSKLTLKHTLRSHQNPVSFVAWSP--DDTKLLTCGNAEVLKLWDVE 297 (517)
Q Consensus 223 ~~v~~~~~s~~~~~l~t~~~dg~i~iw---~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~~dg~i~iwd~~ 297 (517)
+.+..+.......+|+.-+.+|.++-- ++....... + +. ....|..+.- + +..+++..+.+|.++...+.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l--l~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~ 98 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L--KS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLA 98 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C--SS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c--CC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHH
Confidence 455555544445566666777876643 333221111 1 32 3556666644 4 46789999999999998875
Q ss_pred CCc------EEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC--------CeeEeeeCcCCCceEEEEEcc
Q 042434 298 TGI------CKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG--------NEIKAWRGTRIPKVLDLAVTP 363 (517)
Q Consensus 298 ~~~------~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~ 363 (517)
.-. ....+. ....+..+....+...++..+..|. ++.+.... .-...+.......|..+...+
T Consensus 99 ~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~--~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~ 175 (276)
T 3no0_A 99 EFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGR--VARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN 175 (276)
T ss_dssp GTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSE--EEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES
T ss_pred HhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCE--EEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC
Confidence 432 111222 2345555555556668888888888 66665431 111112222234677766666
Q ss_pred CCCEEEEEeCCCcEEEEECCCce--------EEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEE--EEc
Q 042434 364 DGENLISVLSDKDIRILNLGTYA--------ERVISEEHPITSLSVSVDCKNFIVNLNSQEIHM--WDV 422 (517)
Q Consensus 364 ~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~--~d~ 422 (517)
++..++..+..|.++...+.... .........+..+....+...++..+.+|.+.. ++.
T Consensus 176 ~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~ 244 (276)
T 3no0_A 176 GEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQ 244 (276)
T ss_dssp SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEG
T ss_pred CCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCH
Confidence 67789999999999988874432 111123334444433333445666666776666 665
No 360
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=86.29 E-value=17 Score=31.95 Aligned_cols=194 Identities=8% Similarity=-0.005 Sum_probs=105.1
Q ss_pred CCEEEEEECCCCCeEEEEeCCCeEEE---EECCCCcEEEEeCCCCCceEEEEEeC--CCCeEEEeeCCCceeEEEEeCCC
Q 042434 268 NPVSFVAWSPDDTKLLTCGNAEVLKL---WDVETGICKHTFGDHGFIVSSCAWFP--DSKRLVCGSSDTEKGIFMCDCDG 342 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~~dg~i~i---wd~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~~~~~d~~v~i~~~~~~~ 342 (517)
+.+..+.-.....+|+.-+.+|.++- |++..+.....+ .....|..+.. + +...++..+.+|. +.......
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~--iKr~~l~~ 99 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFI-REKFGNRLLLATKKGY--VKKIPLAE 99 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEE-GGGSCSEEEEEETTSE--EEEEEGGG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEEC-CcCCCCEEEEEeCCCE--EEEEEHHH
Confidence 34444443334445555566665543 333322111113 33556666644 4 4678999999998 55555432
Q ss_pred C-----eeEeeeCcCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce--------E--EeeccCCCeeEEEEcCCCCE
Q 042434 343 N-----EIKAWRGTRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA--------E--RVISEEHPITSLSVSVDCKN 407 (517)
Q Consensus 343 ~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~--~~~~~~~~i~~~~~s~~~~~ 407 (517)
- -...........+..+........++..+..|.+..++...-. . ........+..+...+++..
T Consensus 100 ~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 100 FEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPY 179 (276)
T ss_dssp TTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSE
T ss_pred hhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCE
Confidence 1 1222222233466666666667789999999998888753311 1 11233456666666666778
Q ss_pred EEEEeCCCeEEEEEcCCCCc------cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEE--EecC
Q 042434 408 FIVNLNSQEIHMWDVAGKWE------KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYI--WNRR 469 (517)
Q Consensus 408 l~~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i--wd~~ 469 (517)
++..+..|.++...+..-.. -...+ ......+...... ++..++..+.+|.+.. ++..
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i---~~~~~lv~~~~~~-~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS---GTKDTLVDLIPIK-EEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC---CSSSCEEEEEEES-SEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE---cCCCcEEEEEEeC-CCCEEEEEcCCCeEEEeeeCHH
Confidence 99999999988887632100 11111 1112223222222 3345666677777766 7654
No 361
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=81.72 E-value=29 Score=31.08 Aligned_cols=190 Identities=9% Similarity=0.057 Sum_probs=105.7
Q ss_pred CCCCeEEEEeCCCeEEEEECCCCcE-------EEEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC------
Q 042434 277 PDDTKLLTCGNAEVLKLWDVETGIC-------KHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG------ 342 (517)
Q Consensus 277 ~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~------ 342 (517)
++...+++.+.+|.|+--.+..-+. +..+. .....+..+........++..+..|. ++.+....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~--~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGK--LYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSE--EEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCe--EEEEEHHHCCCCCc
Confidence 5667888889999998876643211 11111 12344455555555667777788887 55554421
Q ss_pred ----CeeE-eeeCcCCCceEEEEEcc---CCCEEEEEeCCCcEEEEECCCce--------EEeeccCCCeeEEEEcCCCC
Q 042434 343 ----NEIK-AWRGTRIPKVLDLAVTP---DGENLISVLSDKDIRILNLGTYA--------ERVISEEHPITSLSVSVDCK 406 (517)
Q Consensus 343 ----~~~~-~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~i~~~~~s~~~~ 406 (517)
..+. .+.......|..+...+ +..+++..+..|.++...+.... .........+..+.....+.
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 163 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence 1100 11111223455554433 46688899999999988875432 11122344566665555567
Q ss_pred EEEEEeCCCeEEEEEcCCCCcc-----ceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 407 NFIVNLNSQEIHMWDVAGKWEK-----PFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 407 ~l~~~~~d~~i~~~d~~~~~~~-----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
.++..+.+|.+..+....-... -.....-......+...... ++..+++.+..|..+..++.
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVK-ENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECT-TCSEEEEEETTSEEEEEEGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEEC-CCCeEEEEECCCceEEEEHH
Confidence 8889999999988887431000 00111111122333333333 45567788889998888764
No 362
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=81.00 E-value=35 Score=31.61 Aligned_cols=265 Identities=12% Similarity=0.160 Sum_probs=126.4
Q ss_pred EEEEeeCCCcEEEEEecCCCe--------eeEEEEecc-CCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC-------
Q 042434 236 YLASSSSDCSAIIWKVLEDSK--------LTLKHTLRS-HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG------- 299 (517)
Q Consensus 236 ~l~t~~~dg~i~iw~~~~~~~--------~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~------- 299 (517)
.++.-..||+|..|=.....+ ......+.. ....|..++- .....+....||.|..|-....
T Consensus 12 ~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 12 ENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp ---------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred cceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence 444445677888885543211 111111110 1123444443 2345555677889999854321
Q ss_pred -c---EEEEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC---------C---eeEeeeCcCCCceEEEEEc
Q 042434 300 -I---CKHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG---------N---EIKAWRGTRIPKVLDLAVT 362 (517)
Q Consensus 300 -~---~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~---------~---~~~~~~~~~~~~i~~~~~~ 362 (517)
. ....+. .....+..++.+......+.-+.||. ||.|-... . ............|..++.
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~--v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~- 166 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGE--VYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA- 166 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSC--EEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE-
T ss_pred cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCC--EEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe-
Confidence 1 111121 12334555666666667777788888 88886531 0 011111111124555444
Q ss_pred cCCCEEEEEeCCCcEEEEECCCce------------EEe--eccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-
Q 042434 363 PDGENLISVLSDKDIRILNLGTYA------------ERV--ISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVAGKWE- 427 (517)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~------------~~~--~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~~~~~- 427 (517)
.....++...+|.|+.|-....- ... ......+..++......+.++-..+|.|+.|-.....+
T Consensus 167 -G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqL 245 (389)
T 3kci_A 167 -GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKL 245 (389)
T ss_dssp -CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTT
T ss_pred -CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCC
Confidence 34566667789999999754310 111 11233456666554445677778899999997532111
Q ss_pred ---------cceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC-c----------eeEEecC-CCCCeeE
Q 042434 428 ---------KPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS-K----------PIEILSG-HSMTVNC 486 (517)
Q Consensus 428 ---------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~----------~~~~~~~-h~~~v~~ 486 (517)
.+..+.... ....+...+ ...+.++-..||.|+.|-.... + ....+.. ....|..
T Consensus 246 G~g~~~~~~~p~~v~~~~-~~~v~~v~~---G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ 321 (389)
T 3kci_A 246 GRGGSDGCKVPMKIDSLT-GLGVVKVEC---GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIA 321 (389)
T ss_dssp SSSSCCCEEEEEECGGGT-TSCEEEEEE---ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEE
T ss_pred CCCCCCCccccEEecccC-CCcEEEEeC---CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEE
Confidence 111111111 111111111 2234444567999999965321 0 0111111 2235667
Q ss_pred EEecCCCCcEEEEeeCCCcEEEeCCCC
Q 042434 487 VSWNPKRPKMLASASDDHTIRIWGPCQ 513 (517)
Q Consensus 487 v~~~~~~~~~l~s~~~dg~v~iw~~~~ 513 (517)
|+.... ..+....||.|+.|-...
T Consensus 322 ia~G~~---h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 322 IATGSL---HCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEECSS---EEEEEETTCCEEEEECCT
T ss_pred EEeccC---eEEEECCCCCEEEeeCCC
Confidence 766433 345567899999997654
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.99 E-value=17 Score=38.45 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=33.4
Q ss_pred CCEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe
Q 042434 268 NPVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF 305 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 305 (517)
..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35777888888899999999999999999999998865
No 364
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.82 E-value=14 Score=39.21 Aligned_cols=33 Identities=6% Similarity=-0.038 Sum_probs=28.3
Q ss_pred cCCCCCcEEEEecCCCcEEEEecCCCceeEEec
Q 042434 446 FGGLDGTFIASGSENSQIYIWNRRNSKPIEILS 478 (517)
Q Consensus 446 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 478 (517)
...++..++++-+.|+++|+|++.+++++.+..
T Consensus 242 ~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 242 IFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 335778899999999999999999999888753
No 365
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=79.18 E-value=39 Score=31.07 Aligned_cols=146 Identities=10% Similarity=0.095 Sum_probs=87.9
Q ss_pred ECCCCCeEEEEeCCCeEEEEECCC---------CcEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC----
Q 042434 275 WSPDDTKLLTCGNAEVLKLWDVET---------GICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD---- 341 (517)
Q Consensus 275 ~s~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~---- 341 (517)
+-|+...+++.+.+|.|+--.+.+ |.....++ ....+..+........++..+..|. ++.+...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~--~~~~~~~eip~ 79 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGK--VFWLPVHQLPE 79 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSE--EEEEEGGGSCB
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCe--EEEEEHHHCcC
Confidence 347788999999999999765421 22233343 3455666666666677777778887 5555432
Q ss_pred ------CCeeEe-eeCcCCCceEEEEEcc---CCCEEEEEeCCCcEEEEECCCce------EE--eeccCCCeeEEEEcC
Q 042434 342 ------GNEIKA-WRGTRIPKVLDLAVTP---DGENLISVLSDKDIRILNLGTYA------ER--VISEEHPITSLSVSV 403 (517)
Q Consensus 342 ------~~~~~~-~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~------~~--~~~~~~~i~~~~~s~ 403 (517)
|..+.. +.......|.++.... ++.+++.++..|.++...+.... .. .......+..+....
T Consensus 80 ~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~ 159 (370)
T 3l6v_A 80 AGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTD 159 (370)
T ss_dssp CCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEEC
T ss_pred CCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeC
Confidence 111111 1112223566654432 45689999999999998864432 11 112234455555555
Q ss_pred CCCEEEEEeCCCeEEEEEcC
Q 042434 404 DCKNFIVNLNSQEIHMWDVA 423 (517)
Q Consensus 404 ~~~~l~~~~~d~~i~~~d~~ 423 (517)
....++..+..|.+..++..
T Consensus 160 ~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGG
T ss_pred CCceEEEEeCCCeEEEEEcc
Confidence 56678888899988888763
No 366
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=78.24 E-value=38 Score=30.44 Aligned_cols=188 Identities=9% Similarity=0.029 Sum_probs=104.2
Q ss_pred CCCCEEEEeeCCCcEEEEEecCCC--eeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEEC---CC------Cc
Q 042434 232 NNGEYLASSSSDCSAIIWKVLEDS--KLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDV---ET------GI 300 (517)
Q Consensus 232 ~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~---~~------~~ 300 (517)
|+..++++.+.+|.|+--....-. ... ...+.. .+.+..+........|+..+..|.+.-... .. |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~-~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQ-DFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTC-CCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcc-ccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 566778888899988876543100 000 011222 234444444445566777777887555443 22 22
Q ss_pred EEEEe-C-CCCCceEEEEEeCC---CCeEEEeeCCCceeEEEEeCC-------CCeeEeeeCcCCCceEEEEEccCCCEE
Q 042434 301 CKHTF-G-DHGFIVSSCAWFPD---SKRLVCGSSDTEKGIFMCDCD-------GNEIKAWRGTRIPKVLDLAVTPDGENL 368 (517)
Q Consensus 301 ~~~~~-~-~~~~~v~~i~~~~~---~~~l~~~~~d~~v~i~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l 368 (517)
++..+ . .....|.++...++ +.+++.++.+|. +...... +.-+..+.....+.+..+........+
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~--iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGM--VKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNEL 158 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSE--EEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCe--EEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEE
Confidence 21111 1 12345665544333 567999999998 5555442 122222222222456665555566688
Q ss_pred EEEeCCCcEEEEECCCce--------EE--eeccCCCeeEEEEcCCCC-EEEEEeCCCeEEEEEcC
Q 042434 369 ISVLSDKDIRILNLGTYA--------ER--VISEEHPITSLSVSVDCK-NFIVNLNSQEIHMWDVA 423 (517)
Q Consensus 369 ~~~~~dg~i~i~d~~~~~--------~~--~~~~~~~i~~~~~s~~~~-~l~~~~~d~~i~~~d~~ 423 (517)
+..+.+|.+..++...-. .. .......+.++...+++. .+++.+..|..+..++.
T Consensus 159 ~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 159 FLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp EEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHH
Confidence 889999998888764321 11 122344566665544445 78888888888877764
No 367
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=76.22 E-value=42 Score=29.88 Aligned_cols=229 Identities=7% Similarity=0.010 Sum_probs=118.1
Q ss_pred CCCCeEEEEeCCCeEEEEECCCCcEEE---------EeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC------
Q 042434 277 PDDTKLLTCGNAEVLKLWDVETGICKH---------TFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD------ 341 (517)
Q Consensus 277 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~------ 341 (517)
|+...+++.+.+|.|+--.+.+-+..+ .++ ....+..+........++..+..|. ++.+...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~--~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGR--VYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSE--EEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCE--EEEEEhhHCcCCC
Confidence 456678888999999877765432211 111 2334444444445667777777776 5555432
Q ss_pred ----CCeeE-eeeCcCCCceEEEEEc---cCCCEEEEEeCCCcEEEEECCCce------EEe--eccCCCeeEEEEcCCC
Q 042434 342 ----GNEIK-AWRGTRIPKVLDLAVT---PDGENLISVLSDKDIRILNLGTYA------ERV--ISEEHPITSLSVSVDC 405 (517)
Q Consensus 342 ----~~~~~-~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~------~~~--~~~~~~i~~~~~s~~~ 405 (517)
|.++. .+.......|..+... .++.+++..+.+|.++...+.... ... ......+..+......
T Consensus 78 ~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~ 157 (307)
T 1zi0_A 78 RGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE 157 (307)
T ss_dssp SSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTT
T ss_pred CCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCC
Confidence 11111 1111222356655442 356689999999999998774322 111 1223455555555556
Q ss_pred CEEEEEeCCCeEEEEEcCCCCccce-----EEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC---------
Q 042434 406 KNFIVNLNSQEIHMWDVAGKWEKPF-----KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS--------- 471 (517)
Q Consensus 406 ~~l~~~~~d~~i~~~d~~~~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--------- 471 (517)
..++..+.+|.+..++...-...-. ...........+..... .++..+++.+..|.++-.++..-
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~-~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG 236 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVP-RGDGAILTATQNGYGKRTAVAEYPTKSRATKG 236 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECC-CSSCEEEEEETTSEEEEECGGGSCCCCTTSCC
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEe-cCCCEEEEEEcCCceEEEEHHHhccCCCCCCC
Confidence 6788889999888887643111000 10111122333443332 34557888889999888876321
Q ss_pred ceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 472 KPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 472 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
.....+..-.+.+..+....+. .-++..+.+|.+.-..
T Consensus 237 ~~~~~~~~~~~~lv~~~~v~~~-~~l~~~t~~g~~ir~~ 274 (307)
T 1zi0_A 237 VISIKVTERNGLVVGAVQVDDC-DQIMMITDAGTLVRTR 274 (307)
T ss_dssp EESSCCCTTTCSEEEEEEECTT-CEEEEEESSCCEEEEE
T ss_pred EEeeEecCCCCeEEEEEEeCCC-ceEEEEcCCCcEEEEe
Confidence 1112222223455554443333 3355556666554443
No 368
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=75.80 E-value=1.2 Score=30.53 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=28.5
Q ss_pred CCCchHHHHHHHHHHHhhcChHHHHHHHhhhcCeee
Q 042434 12 GLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSY 47 (517)
Q Consensus 12 ~~~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~ 47 (517)
++++-.++.+-|+++|+++| .|+..|-++-|++-
T Consensus 11 ~d~~~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk 44 (82)
T 1oyi_A 11 DERSNAEIVCEAIKTIGIEG--ATAAQLTRQLNMEK 44 (82)
T ss_dssp --CCSHHHHHHHHHHHSSST--EEHHHHHHHSSSCH
T ss_pred cccchHHHHHHHHHHHHHcC--CCHHHHHHHHCcCH
Confidence 35677889999999999999 88999999999854
No 369
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=71.01 E-value=26 Score=26.01 Aligned_cols=104 Identities=5% Similarity=-0.057 Sum_probs=56.9
Q ss_pred HHHHHHhhcChHHHHHHHhhhcCeeecChhH-HHH-HHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhhhHhhh
Q 042434 22 VVVQCLYSLGYQKSASCLESESGVSYKSKGF-ERL-EVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLN 99 (517)
Q Consensus 22 li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~-~~~-~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~el~~ 99 (517)
+=..|++...|.++.+.+++--.+.-+.... ..+ .-....|+|++|+..+...-..+... ...+-..=.-+..
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~ 93 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-----IKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHH
Confidence 3345677777999998887754332222211 111 22347799999988877642211111 1111111122345
Q ss_pred cCChhHHHHHHHhhcccCCCChhHHhhhhhc
Q 042434 100 RGDDSLALNVLRKRVSSLQMSKDTIHNLASS 130 (517)
Q Consensus 100 ~~~~~~a~~~lr~~~~~~~~~~~~~~~l~~~ 130 (517)
.|++++|+..+++.+.--..+.+....|..+
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 6899999999998765333344444444433
No 370
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=69.43 E-value=64 Score=28.97 Aligned_cols=230 Identities=9% Similarity=0.072 Sum_probs=119.9
Q ss_pred CCCCeEEEEeCCCeEEEEECCCC----cEEEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC----------C
Q 042434 277 PDDTKLLTCGNAEVLKLWDVETG----ICKHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD----------G 342 (517)
Q Consensus 277 ~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~----------~ 342 (517)
|+...+++.+.+|.|+--.+... .....++. ...+..+........++..+..|. ++.+... |
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr--~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGN--YLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSE--EEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCE--EEEEEHHHCcCCCCCCCC
Confidence 56778888899999987654311 11112222 334445545555667777777777 5555432 1
Q ss_pred CeeEe-eeCcCCCceEEEEEccC---CCEEEEEeCCCcEEEEECCCce-------EE--eeccCCCeeEEEEcCCCCEEE
Q 042434 343 NEIKA-WRGTRIPKVLDLAVTPD---GENLISVLSDKDIRILNLGTYA-------ER--VISEEHPITSLSVSVDCKNFI 409 (517)
Q Consensus 343 ~~~~~-~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~-------~~--~~~~~~~i~~~~~s~~~~~l~ 409 (517)
.++.. +.......|..+...++ +.+++.++.+|.++...+.... .. .......+..+........++
T Consensus 80 ~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 80 QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELF 159 (323)
T ss_dssp EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEE
T ss_pred cChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEE
Confidence 11111 11112234665433332 5689999999999998874322 11 112334555555555666788
Q ss_pred EEeCCCeEEEEEcCCCCccc-----eEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC-------CceeEEe
Q 042434 410 VNLNSQEIHMWDVAGKWEKP-----FKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN-------SKPIEIL 477 (517)
Q Consensus 410 ~~~~d~~i~~~d~~~~~~~~-----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~ 477 (517)
..+.+|.+..++...-...- .....-......+......++...+++.+..|..+..++.. ++-+..+
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~ 239 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECe
Confidence 89999998888874310000 01111112223333333333332677788888887777643 1212222
Q ss_pred ---cCCCCCeeE-EEecCCCCcEEEEeeCCCcEEEeCC
Q 042434 478 ---SGHSMTVNC-VSWNPKRPKMLASASDDHTIRIWGP 511 (517)
Q Consensus 478 ---~~h~~~v~~-v~~~~~~~~~l~s~~~dg~v~iw~~ 511 (517)
......+.. ..+.++. .++..+..|.+.-..+
T Consensus 240 ~~~~~~~~~l~~~~~v~~~~--~i~~it~~g~~ir~~~ 275 (323)
T 1wp5_A 240 RELKANPHRISGFVVAQDSD--TIYLQTEKSFIETIKV 275 (323)
T ss_dssp CCCSSSCCCEEEEEEECTTC--EEEEEETTSCEEEEEG
T ss_pred eecCCCCceEEEEEEeCCCC--eEEEEeCCCeEEEEEh
Confidence 222224543 3344443 4556666666544443
No 371
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=69.12 E-value=81 Score=30.04 Aligned_cols=106 Identities=16% Similarity=0.033 Sum_probs=61.1
Q ss_pred CCEEEEEECCCCC-eEEEEeCCCeEEEEECCCCc---EEEEeC---------CCCCceEEEEEeCC----CCeEEEeeCC
Q 042434 268 NPVSFVAWSPDDT-KLLTCGNAEVLKLWDVETGI---CKHTFG---------DHGFIVSSCAWFPD----SKRLVCGSSD 330 (517)
Q Consensus 268 ~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~---~~~~~~---------~~~~~v~~i~~~~~----~~~l~~~~~d 330 (517)
...+.|+|.||+. .++++...|.|++++..... .+..+. ........|+|+|+ +.+.++-+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4467899999996 56666789999999753221 122221 11356788999996 4443433221
Q ss_pred C----------ceeEEEEeCCC-----------CeeEeee-CcCCCceEEEEEccCCCEEEEEeC
Q 042434 331 T----------EKGIFMCDCDG-----------NEIKAWR-GTRIPKVLDLAVTPDGENLISVLS 373 (517)
Q Consensus 331 ~----------~v~i~~~~~~~-----------~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~ 373 (517)
. ..+|..|.... ..+.... .........|.|.|||.+.++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 13466565531 1111111 111225678999999987776554
No 372
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.56 E-value=14 Score=40.23 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=31.3
Q ss_pred CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEe
Q 042434 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTF 305 (517)
Q Consensus 269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 305 (517)
.+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4455566678889999999999999999999998875
No 373
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=62.99 E-value=93 Score=28.54 Aligned_cols=190 Identities=12% Similarity=0.030 Sum_probs=106.5
Q ss_pred CCCCCEEEEeeCCCcEEEEEecC------CCeeeEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE---CCC---
Q 042434 231 SNNGEYLASSSSDCSAIIWKVLE------DSKLTLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD---VET--- 298 (517)
Q Consensus 231 s~~~~~l~t~~~dg~i~iw~~~~------~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd---~~~--- 298 (517)
-|+..++++.+.+|.|+--.+.. +..-..-..+. ..+.+..+........|+..+..|.+.-+. +..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 36777899999999988765421 10011112233 345555555555556677677788665544 322
Q ss_pred ---CcEEEEe-C-CCCCceEEEEEeC---CCCeEEEeeCCCceeEEEEeCCC------CeeEeeeCcCCCceEEEEEccC
Q 042434 299 ---GICKHTF-G-DHGFIVSSCAWFP---DSKRLVCGSSDTEKGIFMCDCDG------NEIKAWRGTRIPKVLDLAVTPD 364 (517)
Q Consensus 299 ---~~~~~~~-~-~~~~~v~~i~~~~---~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~ 364 (517)
|..+..+ . .....|.++...+ ++.+++.++..|. +....... .-+..+.....+.+..+.....
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~--vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~ 160 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGT--VKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDG 160 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSE--EEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECS
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCe--EEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCC
Confidence 2221111 1 2345566654432 4568999999998 55554321 1122222222345555555556
Q ss_pred CCEEEEEeCCCcEEEEECCCce--------EE--eeccCCCeeEEEEcC-------------------------------
Q 042434 365 GENLISVLSDKDIRILNLGTYA--------ER--VISEEHPITSLSVSV------------------------------- 403 (517)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~--------~~--~~~~~~~i~~~~~s~------------------------------- 403 (517)
...++..+.+|.+..++...-. .. .......+.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 6688888999988888764321 11 122334555555444
Q ss_pred ----CCCEEEEEeCCCeEEEEEcC
Q 042434 404 ----DCKNFIVNLNSQEIHMWDVA 423 (517)
Q Consensus 404 ----~~~~l~~~~~d~~i~~~d~~ 423 (517)
++..+++.+..|..+...+.
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~ 264 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLA 264 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGG
T ss_pred ccccCCceEEEeeCCCCEEEEEHH
Confidence 45678899999988888763
No 374
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=62.62 E-value=85 Score=27.96 Aligned_cols=188 Identities=8% Similarity=-0.027 Sum_probs=107.1
Q ss_pred CCCCEEEEeeCCCcEEEEEecCCCee------eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEECC---CC---
Q 042434 232 NNGEYLASSSSDCSAIIWKVLEDSKL------TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVE---TG--- 299 (517)
Q Consensus 232 ~~~~~l~t~~~dg~i~iw~~~~~~~~------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~---~~--- 299 (517)
++..++++.+.+|.|+--....-... .....+.. .+.+..+........++..+..|.++-.... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 46678888899999987766322110 00011222 2344444444455667777888876665542 21
Q ss_pred ---cEE---EEeCCCCCceEEEEEeC---CCCeEEEeeCCCceeEEEEeCCC------CeeEeeeCcCCCceEEEEEccC
Q 042434 300 ---ICK---HTFGDHGFIVSSCAWFP---DSKRLVCGSSDTEKGIFMCDCDG------NEIKAWRGTRIPKVLDLAVTPD 364 (517)
Q Consensus 300 ---~~~---~~~~~~~~~v~~i~~~~---~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~ 364 (517)
..+ -.+ .....|.++...+ +..+++..+..|. ++...... .-.........+.+..+....+
T Consensus 85 ~~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~--~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~ 161 (312)
T 1suu_A 85 SKGQNISELINL-GDQEEILTIKNSKDLTDDAYLLLTTASGK--IARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK 161 (312)
T ss_dssp ---CBGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSE--EEEEEGGGGCC----CEECBCCCTTCCEEEEEEECT
T ss_pred CCCcChhhccCC-CCCCEEEEEEEeccCCCCCEEEEEeCCCe--EEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCC
Confidence 110 012 1234455554443 4667888899998 66655531 1122222222345666666555
Q ss_pred CCEEEEEeCCCcEEEEECCCce--------EE--eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 042434 365 GENLISVLSDKDIRILNLGTYA--------ER--VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVA 423 (517)
Q Consensus 365 ~~~l~~~~~dg~i~i~d~~~~~--------~~--~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~ 423 (517)
+..++..+.+|.+..+....-. .. .......+..+....++..+++.+..|..+..++.
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 6788899999999998875411 11 12234456666665566778888999998888874
No 375
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=62.50 E-value=41 Score=24.33 Aligned_cols=103 Identities=8% Similarity=-0.028 Sum_probs=62.2
Q ss_pred cCCCCCCchHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhH-HHH-HHHHHcCChHHHHHHhhcccCCChhhhccc
Q 042434 8 IGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGF-ERL-EVQILNGDWDGCIDTLIAITDLNDERRASV 85 (517)
Q Consensus 8 ~~~~~~~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~-~~~-~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~ 85 (517)
..+....+...+..+-..++....|.++...+++-....-+.... ..+ .-....|+|++|+..+...-......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---- 83 (133)
T 2lni_A 8 HSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF---- 83 (133)
T ss_dssp TCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC----
T ss_pred CCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc----
Confidence 344555667777888888888888999999888876553333221 111 22346899999998887642211110
Q ss_pred chhhhhhhhhHhhhcCChhHHHHHHHhhcc
Q 042434 86 LFPVFKQCFLEYLNRGDDSLALNVLRKRVS 115 (517)
Q Consensus 86 ~~~~~~~~~~el~~~~~~~~a~~~lr~~~~ 115 (517)
...+-..-.-+...+++.+|+..+++.+.
T Consensus 84 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 84 -IKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 01111111122356889999999987653
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=62.25 E-value=28 Score=34.36 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=42.5
Q ss_pred CEEEEEECCCCCeEEEEeCC------------CeEEEEECCCCcEEEEeCCC-CCceEEEEEeCCCCeEEEe
Q 042434 269 PVSFVAWSPDDTKLLTCGNA------------EVLKLWDVETGICKHTFGDH-GFIVSSCAWFPDSKRLVCG 327 (517)
Q Consensus 269 ~v~~l~~s~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~ 327 (517)
..-.|+|+|.|++++.-..+ ..+.+.+..+++..+.+..+ ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34678999999866654322 24566677778776655544 6789999999999887764
No 377
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=61.77 E-value=78 Score=27.24 Aligned_cols=112 Identities=6% Similarity=0.021 Sum_probs=62.3
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCc---e---E-----EeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 042434 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTY---A---E-----RVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDVA 423 (517)
Q Consensus 355 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~---~-----~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~ 423 (517)
.+..+........++..+..|.++-+....- . . ........|.++....++.+++..+..|.++...+.
T Consensus 34 ~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~ 113 (256)
T 1zvt_A 34 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFN 113 (256)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGG
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHH
Confidence 4555544445556777778887666554221 1 1 112234456666444466778899999999988873
Q ss_pred CC------CccceEEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecC
Q 042434 424 GK------WEKPFKYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRR 469 (517)
Q Consensus 424 ~~------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 469 (517)
.- ......+. .....+.......++..++..+.+|.+..++..
T Consensus 114 e~~~~~r~G~~~i~L~---~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ 162 (256)
T 1zvt_A 114 DLVARNRAGKALITLP---ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVS 162 (256)
T ss_dssp GGCCCSTTCEECBCCC---TTCCBCCCEECCCTTCEEEEEETTSEEEEEEGG
T ss_pred HhcccCcCceEEEEEC---CCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHH
Confidence 21 11111221 112222222221234577888889988888764
No 378
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=61.62 E-value=12 Score=28.83 Aligned_cols=51 Identities=14% Similarity=0.288 Sum_probs=37.2
Q ss_pred hhcccchhhhhhhhhHhhhcCChhHHHHHHHhhcccCCCChhHHhhhhhcc
Q 042434 81 RRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSM 131 (517)
Q Consensus 81 ~~~~~~~~~~~~~~~el~~~~~~~~a~~~lr~~~~~~~~~~~~~~~l~~~~ 131 (517)
....++|.++-+-|+||+..|..++|..++.+--.......+.++.|..+.
T Consensus 29 EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~i~~L~~i~ 79 (138)
T 2j4b_A 29 DLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNKSEEIKQFESIY 79 (138)
T ss_dssp HHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--CHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhHHHHHHHHhcCC
Confidence 456779999999999999999999999999875433322355555555443
No 379
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=61.07 E-value=1e+02 Score=28.38 Aligned_cols=182 Identities=12% Similarity=0.121 Sum_probs=97.0
Q ss_pred EEEEeeCCCcEEEEEecCCC--------eeeEEEEecc-CCCCEEEEEECCCCCeEEEEeCCCeEEEEECCCC-------
Q 042434 236 YLASSSSDCSAIIWKVLEDS--------KLTLKHTLRS-HQNPVSFVAWSPDDTKLLTCGNAEVLKLWDVETG------- 299 (517)
Q Consensus 236 ~l~t~~~dg~i~iw~~~~~~--------~~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~------- 299 (517)
..+.-..||.|..|-..... .......+.. ....+..++.+......+....||.|..|-....
T Consensus 64 ~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~ 143 (389)
T 3kci_A 64 TLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN 143 (389)
T ss_dssp EEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSS
T ss_pred eEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCC
Confidence 44444678888888543211 1111122222 2334666777776777777788999999954321
Q ss_pred ----cEEEEeCC-CCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCCC----------C--eeEeeeCcCCCceEEEEEc
Q 042434 300 ----ICKHTFGD-HGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCDG----------N--EIKAWRGTRIPKVLDLAVT 362 (517)
Q Consensus 300 ----~~~~~~~~-~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~~----------~--~~~~~~~~~~~~i~~~~~~ 362 (517)
.....+.. ....|..++.. ....++-..+|. +|.|-... . ............|..++..
T Consensus 144 ~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~--v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 144 RSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGD--LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp CCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSC--EEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCe--EEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 11112211 12356666554 345556667888 88886531 0 1111112222356666665
Q ss_pred cCCCEEEEEeCCCcEEEEECCCce------------EEeec--cCCCeeEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 042434 363 PDGENLISVLSDKDIRILNLGTYA------------ERVIS--EEHPITSLSVSVDCKNFIVNLNSQEIHMWDVA 423 (517)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~--~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~~ 423 (517)
......++...+|.|+.|-....- ..... ....+..++.. ..+.++-+.+|.|+.|-..
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECC
T ss_pred CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCC
Confidence 444667777889999999754311 11111 11234444433 3455556788999999753
No 380
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=56.09 E-value=1.1e+02 Score=27.36 Aligned_cols=228 Identities=6% Similarity=0.011 Sum_probs=118.8
Q ss_pred CCeEEEEeCCCeEEEEECCC-------CcEEEEeC-CCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC---------
Q 042434 279 DTKLLTCGNAEVLKLWDVET-------GICKHTFG-DHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD--------- 341 (517)
Q Consensus 279 ~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~-~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~--------- 341 (517)
...+++.+.+|.|+--.+.+ |+-...+. .....+..+........++.-+..|. ++.....
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr--~y~~~~~~lp~~~r~~ 80 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGR--VYRAKAYDLPEASRTA 80 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSE--EEEEEGGGSCBCCSSS
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCe--EEEEEHHHCcCCCccC
Confidence 34667778888888665322 11111111 12334555555555666666677776 5554421
Q ss_pred -CCeeEe-eeCcCCCceEEEEEcc---CCCEEEEEeCCCcEEEEECCCce------E--EeeccCCCeeEEEEcCCCCEE
Q 042434 342 -GNEIKA-WRGTRIPKVLDLAVTP---DGENLISVLSDKDIRILNLGTYA------E--RVISEEHPITSLSVSVDCKNF 408 (517)
Q Consensus 342 -~~~~~~-~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~------~--~~~~~~~~i~~~~~s~~~~~l 408 (517)
|.++.. +.......|..+..-+ +...++..+.+|.++...+.... . ........+..+........+
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~i 160 (327)
T 3uc1_A 81 RGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDL 160 (327)
T ss_dssp CCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEE
T ss_pred CCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEE
Confidence 111111 1111223565554433 57799999999999998875533 1 112234455555555566788
Q ss_pred EEEeCCCeEEEEEcC--CCCccce-----EEeCcccCceEEEeecCCCCCcEEEEecCCCcEEEEecCCC-------cee
Q 042434 409 IVNLNSQEIHMWDVA--GKWEKPF-----KYTGHSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRNS-------KPI 474 (517)
Q Consensus 409 ~~~~~d~~i~~~d~~--~~~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~ 474 (517)
+..+..|.+..+... .-...-. ...........+..... +++.+++..+..|.++.-.+..- +-+
T Consensus 161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~-~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~ 239 (327)
T 3uc1_A 161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVV-REGTYLLVATSGGYAKRTAIEEYPVQGRGGKGV 239 (327)
T ss_dssp EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEEC-CTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred EEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEE-CCCCEEEEEeCCCcEEEEEHHHccccCcCCCcE
Confidence 899999998888775 2111000 00111122333444443 34567888899999888875422 222
Q ss_pred EEec--CCCCCeeEEEecCCCCcEEEEeeCCCcEEEeC
Q 042434 475 EILS--GHSMTVNCVSWNPKRPKMLASASDDHTIRIWG 510 (517)
Q Consensus 475 ~~~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~v~iw~ 510 (517)
..+. .-.+.+..+....+. ..++..+.+|.+.-++
T Consensus 240 ~~~~l~~~~d~lv~~~~~~~~-~~i~l~T~~G~~ir~~ 276 (327)
T 3uc1_A 240 LTVMYDRRRGRLVGALIVDDD-SELYAVTSGGGVIRTA 276 (327)
T ss_dssp ESSCCCTTTCSEEEEEEECTT-CEEEEEEGGGCEEEEE
T ss_pred EEEEecCCCCeEEEEEEeCCC-ccEEEEcCCCeEEEEe
Confidence 2222 213345554443333 3455566666655554
No 381
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=56.09 E-value=25 Score=38.26 Aligned_cols=31 Identities=6% Similarity=0.005 Sum_probs=27.3
Q ss_pred CCCCcEEEEecCCCcEEEEecCCCceeEEec
Q 042434 448 GLDGTFIASGSENSQIYIWNRRNSKPIEILS 478 (517)
Q Consensus 448 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 478 (517)
.++..++++-+.|+++++|++.+++++.+..
T Consensus 246 ~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 246 LSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp ETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred cCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 5678899999999999999999999887753
No 382
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=56.01 E-value=14 Score=29.03 Aligned_cols=52 Identities=17% Similarity=0.315 Sum_probs=38.1
Q ss_pred hhhcccchhhhhhhhhHhhhcCChhHHHHHHHhhcccCCC-ChhHHhhhhhcc
Q 042434 80 ERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQM-SKDTIHNLASSM 131 (517)
Q Consensus 80 ~~~~~~~~~~~~~~~~el~~~~~~~~a~~~lr~~~~~~~~-~~~~~~~l~~~~ 131 (517)
.....++|.++-+-|++|+..|...+|..++++--..... ..+.++.|..+.
T Consensus 47 ~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~ 99 (156)
T 2nxp_A 47 AELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLT 99 (156)
T ss_dssp HHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCC
Confidence 3456779999999999999999999999999875433322 345555555433
No 383
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=54.32 E-value=68 Score=31.41 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=43.5
Q ss_pred CCEEEEEECCCCCeEEEEeC------------CCeEEEEECCCCcEEEEeCCC-CCceEEEEEeCCCCeEEEee
Q 042434 268 NPVSFVAWSPDDTKLLTCGN------------AEVLKLWDVETGICKHTFGDH-GFIVSSCAWFPDSKRLVCGS 328 (517)
Q Consensus 268 ~~v~~l~~s~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~~~~ 328 (517)
.....|.|.++|.+.++... ...+..++..+|+....+... ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999987774321 125667777778766655433 46789999999999887653
No 384
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=54.06 E-value=1.1e+02 Score=26.38 Aligned_cols=141 Identities=9% Similarity=0.017 Sum_probs=75.9
Q ss_pred eEEEEeCCCeEEEEECCCCcE-EEEeCCCCCceEEEEEeCCCCeEEEeeCCCceeEEEEeCC--------CCeeE-eeeC
Q 042434 281 KLLTCGNAEVLKLWDVETGIC-KHTFGDHGFIVSSCAWFPDSKRLVCGSSDTEKGIFMCDCD--------GNEIK-AWRG 350 (517)
Q Consensus 281 ~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~~~~~d~~v~i~~~~~~--------~~~~~-~~~~ 350 (517)
.+++.+.+|.|+--....-.. ...+.. ...+..+........++..+..|. ++.+... |..+. .+..
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~~t~~~ll~~T~~Gr--~~~~~~~elp~~r~~G~~i~~~i~L 80 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKGKSNQPVVFVDSTGR--SYAIDPITLPSARGQGEPLTGKLTL 80 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEEETTSCEEEEETTSE--EEEECGGGSCCSSSCCEEGGGTCCC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEeCCCCEEEEEeCCCe--EEEEEHHHCCCcCCCCeEeeeeecC
Confidence 345556677666554322110 001222 233444444444556666677776 5555432 11110 1111
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCCcEEEEECCCce------EE--eeccCCCeeEEEEc-CCCCEEEEEeCCCeEEEEE
Q 042434 351 TRIPKVLDLAVTPDGENLISVLSDKDIRILNLGTYA------ER--VISEEHPITSLSVS-VDCKNFIVNLNSQEIHMWD 421 (517)
Q Consensus 351 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~--~~~~~~~i~~~~~s-~~~~~l~~~~~d~~i~~~d 421 (517)
.....|.++....++.+++.++..|.++...+.... .. .......+..+... .++..++..+.+|.+..++
T Consensus 81 ~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 81 PPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp CTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 223356666444566778899999999998874421 11 11223445555555 3456888999999998888
Q ss_pred cCC
Q 042434 422 VAG 424 (517)
Q Consensus 422 ~~~ 424 (517)
...
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 743
No 385
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=52.85 E-value=11 Score=24.18 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=37.5
Q ss_pred ccCCCCCC-chHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHHHHHHHH
Q 042434 7 MIGPRGLI-KKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERLEVQI 59 (517)
Q Consensus 7 ~~~~~~~~-~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~~~~i 59 (517)
++++++.+ +|+.+.|||.--|.=-||..-|..|..+.+..-.+|+ ++|-+.+
T Consensus 6 ~~~~~~~iK~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~~c~PS-drL~~iv 58 (66)
T 2xz2_A 6 ILDPSNLVKNREILYRLMISQLMYDGLEKFAMELSMLVKADQCAPS-ERLLHVM 58 (66)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCCCCCCC-CHHHHHH
T ss_pred ccCchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCCCcH-HHHHHHH
Confidence 44555444 5788999999989999999999999999886543333 4444433
No 386
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=51.78 E-value=25 Score=35.48 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=30.2
Q ss_pred CEEEEEECCCCCeEEEEeCCCeEEEEECCCCcEEEEeCC
Q 042434 269 PVSFVAWSPDDTKLLTCGNAEVLKLWDVETGICKHTFGD 307 (517)
Q Consensus 269 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 307 (517)
.|.++.+ +..++++-+.|.++|+|++.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4666655 367999999999999999999998877643
No 387
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=51.24 E-value=2.1e+02 Score=29.01 Aligned_cols=237 Identities=11% Similarity=0.128 Sum_probs=114.8
Q ss_pred EEEEE-ECCCCCEEEEe-e----CCCcEEEEEecCCCeeeEEEEec-cCCC------CEEEEEECCCCCeEEEE------
Q 042434 225 VWFVQ-FSNNGEYLASS-S----SDCSAIIWKVLEDSKLTLKHTLR-SHQN------PVSFVAWSPDDTKLLTC------ 285 (517)
Q Consensus 225 v~~~~-~s~~~~~l~t~-~----~dg~i~iw~~~~~~~~~~~~~~~-~h~~------~v~~l~~s~~~~~l~s~------ 285 (517)
...+. ++|++++++.+ | .-..++++|+.++..+. ..+. .-.. ....++|..++..+++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~--~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK--NGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT--TCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC--CCcccccccccccccccceeeEECCCEEEEEeCCCCCC
Confidence 34455 89999987764 2 22358999997663221 0111 0000 01334776344444432
Q ss_pred ----eCCCeEEEEECCCCc--EEEEeCCCCCce-EEEEEeCCCCe-----EEEeeCCC-ceeEEEEeCCC--CeeEeeeC
Q 042434 286 ----GNAEVLKLWDVETGI--CKHTFGDHGFIV-SSCAWFPDSKR-----LVCGSSDT-EKGIFMCDCDG--NEIKAWRG 350 (517)
Q Consensus 286 ----~~dg~i~iwd~~~~~--~~~~~~~~~~~v-~~i~~~~~~~~-----l~~~~~d~-~v~i~~~~~~~--~~~~~~~~ 350 (517)
+....|+.|.+-+.. -...+......+ .+...++++++ +++.+.+. .-.++..+... .....+..
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 122478999886642 233444333332 34455666663 44433222 23477777652 33333332
Q ss_pred cCCCceEEEEEccCCCEEEEE----------eCCCcEEEEECCCc--------e-EEeec--cCCCeeEEEEcCCCCEEE
Q 042434 351 TRIPKVLDLAVTPDGENLISV----------LSDKDIRILNLGTY--------A-ERVIS--EEHPITSLSVSVDCKNFI 409 (517)
Q Consensus 351 ~~~~~i~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~--------~-~~~~~--~~~~i~~~~~s~~~~~l~ 409 (517)
..... +..+.++..++.. ...+.|...|+.+. . ...+. ....+..+.+..+ ..++
T Consensus 289 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 289 PSDAT---LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp CTTCE---EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred CCcce---EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 22211 2334455554432 24677999998763 1 22222 2335677888865 4566
Q ss_pred EEeCCC--eEEEEEcCCCCccceE-EeCcccCceEEEeecCCCCCc-EEEEecC---CCcEEEEecC
Q 042434 410 VNLNSQ--EIHMWDVAGKWEKPFK-YTGHSQNKYVIRSCFGGLDGT-FIASGSE---NSQIYIWNRR 469 (517)
Q Consensus 410 ~~~~d~--~i~~~d~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~-~l~~~~~---dg~i~iwd~~ 469 (517)
+...++ .+.++|+.++.-.... +....... +.....++++. ++++.+. -+.++.+|+.
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~--~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNA--IFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECCCSTTC--EEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCCCCCeE--EEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 666666 4677776544111222 21111111 22222245544 4444332 2578888876
No 388
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=50.87 E-value=1.1e+02 Score=26.61 Aligned_cols=89 Identities=18% Similarity=0.151 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhhcC-hHHHHHHHhhh--cCeeecChhHHHH--HHHHHcCChHHHHHHhhcccCCChhhhcccchhhh
Q 042434 16 KYEFVRVVVQCLYSLG-YQKSASCLESE--SGVSYKSKGFERL--EVQILNGDWDGCIDTLIAITDLNDERRASVLFPVF 90 (517)
Q Consensus 16 ~~~~~~li~q~L~~~g-~~~s~~~l~~E--sg~~~~~~~~~~~--~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~ 90 (517)
.-+.++++.+++...| +.++.+.|++- .++.-+.+..... .-....|++++|+..+.. +... ..+
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~-------~~~ 133 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSL-------ECM 133 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSH-------HHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCH-------HHH
Confidence 3456667777777766 77777777763 2221122222222 223467888888888776 1110 011
Q ss_pred hhhhhHhhhcCChhHHHHHHHhhc
Q 042434 91 KQCFLEYLNRGDDSLALNVLRKRV 114 (517)
Q Consensus 91 ~~~~~el~~~~~~~~a~~~lr~~~ 114 (517)
-....-++..|+.++|...+++.+
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111112334577788877777654
No 389
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=50.54 E-value=10 Score=18.87 Aligned_cols=14 Identities=21% Similarity=0.301 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhhc
Q 042434 17 YEFVRVVVQCLYSL 30 (517)
Q Consensus 17 ~~~~~li~q~L~~~ 30 (517)
+|+++||.||-...
T Consensus 5 kDvlql~qQy~qsh 18 (26)
T 1kdl_A 5 KDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 57999999986653
No 390
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=48.72 E-value=27 Score=35.26 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=26.9
Q ss_pred CCCcEEEEecCCCcEEEEecCCCceeEEecC
Q 042434 449 LDGTFIASGSENSQIYIWNRRNSKPIEILSG 479 (517)
Q Consensus 449 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 479 (517)
.+..++++-+.|.++|+|++++++++.+..-
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4578999999999999999999998877653
No 391
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=47.39 E-value=20 Score=27.87 Aligned_cols=34 Identities=15% Similarity=0.368 Sum_probs=29.8
Q ss_pred hhhhcccchhhhhhhhhHhhhcCChhHHHHHHHhh
Q 042434 79 DERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKR 113 (517)
Q Consensus 79 ~~~~~~~~~~~~~~~~~el~~~~~~~~a~~~lr~~ 113 (517)
......++|.++-+-|+||+..| .++|..++.+-
T Consensus 29 k~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f 62 (148)
T 2j49_A 29 KPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRF 62 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 34567789999999999999999 99999999864
No 392
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=47.07 E-value=1.7e+02 Score=26.85 Aligned_cols=187 Identities=9% Similarity=0.016 Sum_probs=98.4
Q ss_pred eEEEEECCCC--cEEEEeCC------CCCceEEEEEe---CC----CCeEEEeeCCCceeEEEEeCCCCeeEeeeCcCCC
Q 042434 290 VLKLWDVETG--ICKHTFGD------HGFIVSSCAWF---PD----SKRLVCGSSDTEKGIFMCDCDGNEIKAWRGTRIP 354 (517)
Q Consensus 290 ~i~iwd~~~~--~~~~~~~~------~~~~v~~i~~~---~~----~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~ 354 (517)
.|.+||+.++ +.++++.- ....+..+.+. |+ +.++..+.. +.-.+.++|..+..........
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~-~~~gLIVydl~~~~swRv~~~~-- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNF-LRGALFIYDHKKQDSWNVTHPT-- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEET-TTTEEEEEETTTTEEEEEECGG--
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcC-CCCcEEEEECCCCcEEEEccCC--
Confidence 6888999998 88877642 24457778777 22 233333332 2234888888876655544221
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEECCCceEEeeccCCCeeEEEEcCC----CCEEEEEeCCC-eEEEEEc---CCCC
Q 042434 355 KVLDLAVTPDGENLISVLSDKDIRILNLGTYAERVISEEHPITSLSVSVD----CKNFIVNLNSQ-EIHMWDV---AGKW 426 (517)
Q Consensus 355 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~i~~~~~s~~----~~~l~~~~~d~-~i~~~d~---~~~~ 426 (517)
+.|+....++ -+|.-.- ....+..++++|+ ++.|......+ .+.-... +...
T Consensus 201 ------~~pd~~~~~~--i~G~~~~------------~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~ 260 (381)
T 3q6k_A 201 ------FKAERPTKFD--YGGKEYE------------FKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKG 260 (381)
T ss_dssp ------GSCCSCEEEE--ETTEEEE------------ECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTT
T ss_pred ------CccccCcceE--ECCEEeE------------eccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcc
Confidence 2333111111 1121111 1346888999997 77777666554 3333331 2210
Q ss_pred -ccceEEeCcccC-ceEEEeecCC-CCCcEEEEecCCCcEEEEecCC-C---ceeEEec-C-CCCCeeEEEecCCCCcEE
Q 042434 427 -EKPFKYTGHSQN-KYVIRSCFGG-LDGTFIASGSENSQIYIWNRRN-S---KPIEILS-G-HSMTVNCVSWNPKRPKML 497 (517)
Q Consensus 427 -~~~~~~~~~~~~-~~~i~~~~~s-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~-~-h~~~v~~v~~~~~~~~~l 497 (517)
.......+.... .... ..... .+|.++++--+...|..|+..+ . .....+. . .-..+.++.+.+++ .+.
T Consensus 261 ~~~~v~~~G~kg~~s~~~-~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g-~Lw 338 (381)
T 3q6k_A 261 GKLNPELLGNRGKYNDAI-ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKG-GLW 338 (381)
T ss_dssp CCCCCEEEEECCTTCCEE-EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTS-CEE
T ss_pred hhhceEEeeecCCCCCcc-eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCC-eEE
Confidence 111122222221 1112 12223 5788888888889999999875 1 1222222 1 22357788888887 555
Q ss_pred EEee
Q 042434 498 ASAS 501 (517)
Q Consensus 498 ~s~~ 501 (517)
+..+
T Consensus 339 v~sn 342 (381)
T 3q6k_A 339 FMSN 342 (381)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5543
No 393
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=46.69 E-value=12 Score=29.09 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=22.9
Q ss_pred CCCCccccCCCCCCchHHHHHHHHHHHhhcC
Q 042434 1 MENSSTMIGPRGLIKKYEFVRVVVQCLYSLG 31 (517)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~li~q~L~~~g 31 (517)
|.|+-+|.+.+ +++.+++++-..+||++.|
T Consensus 1 ~~~~~~m~tvk-DV~a~~fI~~~A~~LKk~g 30 (155)
T 2xzm_T 1 MSNNQSFFTVK-DVAAADFIREYASHLKKAN 30 (155)
T ss_dssp -----CCCCGG-GSCHHHHHHHHHHHTTSSC
T ss_pred CCCCCCCceee-ecCHHHHHHHHHHHHHhcC
Confidence 77888888887 7899999999999999888
No 394
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=43.74 E-value=2.8e+02 Score=28.23 Aligned_cols=104 Identities=15% Similarity=0.048 Sum_probs=55.3
Q ss_pred CEEEEEECCCC-CeEEEEeCCCeEEEEECCCCcEEEEeCCC-------CCceEEEEEeC-CCCeEEEeeCC-------Cc
Q 042434 269 PVSFVAWSPDD-TKLLTCGNAEVLKLWDVETGICKHTFGDH-------GFIVSSCAWFP-DSKRLVCGSSD-------TE 332 (517)
Q Consensus 269 ~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~i~~~~-~~~~l~~~~~d-------~~ 332 (517)
.|..|+++|.+ ..++++...+.|..++ ..|+.-..+..+ ...|.++++.| +...++++... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 79999999964 5566666566665554 234433333222 24589999998 33444444321 01
Q ss_pred eeEEEEeCCCCeeEeeeCcC--------CCceEEEEEccCC-CEEEEEeC
Q 042434 333 KGIFMCDCDGNEIKAWRGTR--------IPKVLDLAVTPDG-ENLISVLS 373 (517)
Q Consensus 333 v~i~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~-~~l~~~~~ 373 (517)
..|+.-.-.++.-....... ...+..++++|.. ..++++..
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 22544433343332222110 0124678898854 45666653
No 395
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=43.32 E-value=88 Score=30.85 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=31.0
Q ss_pred eEEEEEeCCCCeEEEeeCC----------CceeEEEEeCCCCeeEee-eCcCCCceEEEEEccCCCEEEE
Q 042434 312 VSSCAWFPDSKRLVCGSSD----------TEKGIFMCDCDGNEIKAW-RGTRIPKVLDLAVTPDGENLIS 370 (517)
Q Consensus 312 v~~i~~~~~~~~l~~~~~d----------~~v~i~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~ 370 (517)
.-.|+|+|.|.++++-..+ +.-.++..+.....+..+ .......++.++|+||++.|++
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfv 547 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEE
Confidence 3568899998866654332 112245555544333333 2333345666666666655444
No 396
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=42.63 E-value=78 Score=26.73 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHhhhcCeeecC-hhHHHH-HHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhh
Q 042434 17 YEFVRVVVQCLYSLGYQKSASCLESESGVSYKS-KGFERL-EVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCF 94 (517)
Q Consensus 17 ~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~-~~~~~~-~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (517)
+.++..-.-++....|.++...+++--....+. .....+ ......|++++|+..+...-.... ........+-..-
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~lg 81 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN--ATKAKSADFEYYG 81 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC--TTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC--chhHHHHHHHHHH
Confidence 344555555666666777777776654332222 121222 234467888888877776422111 1111111111111
Q ss_pred hHhhhcCChhHHHHHHHhhcc
Q 042434 95 LEYLNRGDDSLALNVLRKRVS 115 (517)
Q Consensus 95 ~el~~~~~~~~a~~~lr~~~~ 115 (517)
.-+...+++.+|+..+++.+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~ 102 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVD 102 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHh
Confidence 222345777777777776644
No 397
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=42.14 E-value=21 Score=27.07 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhcChH-HHHHHHhhhcC
Q 042434 17 YEFVRVVVQCLYSLGYQ-KSASCLESESG 44 (517)
Q Consensus 17 ~~~~~li~q~L~~~g~~-~s~~~l~~Esg 44 (517)
.++...|...|.+.||- .+...+.++.|
T Consensus 22 ~~ia~~iI~~LD~~GYL~~~l~eia~~l~ 50 (130)
T 2k9m_A 22 QELALELLNYLNEKGFLSKSVEEISDVLR 50 (130)
T ss_dssp HHHHHHHTTSBCTTSSBSSCHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHcC
Confidence 55778888899999984 44455555554
No 398
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=41.23 E-value=1.7e+02 Score=28.75 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=29.6
Q ss_pred ceEEEEEeCCCCeEEEeeCC----------CceeEEEEeCCCCeeEeeeC-cCCCceEEEEEccCCCEEEEE
Q 042434 311 IVSSCAWFPDSKRLVCGSSD----------TEKGIFMCDCDGNEIKAWRG-TRIPKVLDLAVTPDGENLISV 371 (517)
Q Consensus 311 ~v~~i~~~~~~~~l~~~~~d----------~~v~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~ 371 (517)
....|.|.++|.+.++.... +.-.++.++..+..+..+.. .....++.++|+||++.|+++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 34567777777766632211 11135555554444433332 222345666666666555443
No 399
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=40.95 E-value=11 Score=26.73 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=25.9
Q ss_pred cchhhhhhhhhHhhhcCC---hhHHHHHHHhhcc
Q 042434 85 VLFPVFKQCFLEYLNRGD---DSLALNVLRKRVS 115 (517)
Q Consensus 85 ~~~~~~~~~~~el~~~~~---~~~a~~~lr~~~~ 115 (517)
+=|.-||...+|||..+. -..|+.++++.+-
T Consensus 49 ~GfaPYErR~mELLKvsk~~~dKRAlKf~KKRlG 82 (104)
T 4a18_Q 49 TGFAPYEKRIIELIKAGSAKDSKKATKIARKRLG 82 (104)
T ss_dssp HCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHC
T ss_pred hcCchhHHHHHHHHHcccchhhHHHHHHHHHHhh
Confidence 345569999999999998 7889999998763
No 400
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=40.24 E-value=35 Score=27.20 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=44.5
Q ss_pred CCCCCCchHHHHHHHHHHHhhcChH-HHHHHHhhhcCeeecC-----hhHHHHHHHHHcCChHHHHHHh
Q 042434 9 GPRGLIKKYEFVRVVVQCLYSLGYQ-KSASCLESESGVSYKS-----KGFERLEVQILNGDWDGCIDTL 71 (517)
Q Consensus 9 ~~~~~~~~~~~~~li~q~L~~~g~~-~s~~~l~~Esg~~~~~-----~~~~~~~~~i~~g~w~~~~~~l 71 (517)
.++..-.++.|+.--.+-+.+.||. -|...+-+++|++--+ ++.+.|..++..--.+.....+
T Consensus 5 ~~~~~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~ 73 (191)
T 3on4_A 5 PMNISNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHYHFPSKEDLGVAVISWHTDKIAAVL 73 (191)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445668999999999999999998 6789999999996432 4556666555543344433333
No 401
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=39.18 E-value=18 Score=28.90 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=43.6
Q ss_pred cCCCCCCchHHHHHHHHHHHhhcChHH-HHHHHhhhcCeeec----C-hhHHHHHHHHHcCChHHHHH
Q 042434 8 IGPRGLIKKYEFVRVVVQCLYSLGYQK-SASCLESESGVSYK----S-KGFERLEVQILNGDWDGCID 69 (517)
Q Consensus 8 ~~~~~~~~~~~~~~li~q~L~~~g~~~-s~~~l~~Esg~~~~----~-~~~~~~~~~i~~g~w~~~~~ 69 (517)
+.++..-.++.|+.--.+-+.+.||.. |...+-+++|++-. . ++.+.|..++..--.+....
T Consensus 2 M~~r~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~ 69 (183)
T 1zk8_A 2 MSPRIGLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLGIYGIKKLHN 69 (183)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 455667789999999999999999995 88999999999632 2 55666666665443444333
No 402
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=38.64 E-value=83 Score=27.33 Aligned_cols=107 Identities=15% Similarity=0.096 Sum_probs=55.3
Q ss_pred HHHHHHhhcChHHHHHHHhhhcCeeecChhHH-HH-HHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhhhHhhh
Q 042434 22 VVVQCLYSLGYQKSASCLESESGVSYKSKGFE-RL-EVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLN 99 (517)
Q Consensus 22 li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~-~~-~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~el~~ 99 (517)
+-..++....+.++...+++-....-+..... .+ .-.+..|++++|+..+..+...... . ....-..-+++..
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~---~--~~~~~~~~~~l~~ 197 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD---T--RYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS---H--HHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc---h--HHHHHHHHHHHHh
Confidence 33444555567777666666543322222222 22 2345789999999888876332111 1 1111122234455
Q ss_pred cCChhHHHHHHHhhcccCCCChhHHhhhhhcccc
Q 042434 100 RGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLC 133 (517)
Q Consensus 100 ~~~~~~a~~~lr~~~~~~~~~~~~~~~l~~~~~~ 133 (517)
.+...+|+..+++.+.....+.+....|+.++..
T Consensus 198 ~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAENPEDAALATQLALQLHQ 231 (287)
T ss_dssp HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 5667777777777654433444545555555443
No 403
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=37.91 E-value=98 Score=21.35 Aligned_cols=93 Identities=9% Similarity=0.017 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhcChHHHHHHHhhhcCeeecChh-HHHH-HHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhhh
Q 042434 18 EFVRVVVQCLYSLGYQKSASCLESESGVSYKSKG-FERL-EVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFL 95 (517)
Q Consensus 18 ~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~-~~~~-~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (517)
....+...++....|.++...+++--....+... ...+ .-....|+|++|+..+...-...... ..++-..-.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~a~ 80 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-----GKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-----HHHHHHHHH
Confidence 4455666777778899988888775443322221 1111 22346799999998887652211110 111111111
Q ss_pred HhhhcCChhHHHHHHHhhcc
Q 042434 96 EYLNRGDDSLALNVLRKRVS 115 (517)
Q Consensus 96 el~~~~~~~~a~~~lr~~~~ 115 (517)
-+...+++.+|+..+++.+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 22356889999999987654
No 404
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=37.23 E-value=1.5e+02 Score=25.65 Aligned_cols=98 Identities=11% Similarity=0.061 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHH---HH-----HHHHHcCChHHHHHHhhcc-cCCChhhhcccch
Q 042434 17 YEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFE---RL-----EVQILNGDWDGCIDTLIAI-TDLNDERRASVLF 87 (517)
Q Consensus 17 ~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~---~~-----~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~ 87 (517)
+++...+..++....|.++...+++.-......+... .+ .-....|++++|+..+... .............
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455677788888889998887765433221121111 11 1123567999998887653 2211111111112
Q ss_pred hhhhhhhhHhhhcCChhHHHHHHHhhc
Q 042434 88 PVFKQCFLEYLNRGDDSLALNVLRKRV 114 (517)
Q Consensus 88 ~~~~~~~~el~~~~~~~~a~~~lr~~~ 114 (517)
.++...-.-+...+++++|+..+++.+
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233333333446789999999998876
No 405
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=36.74 E-value=2.2e+02 Score=25.10 Aligned_cols=188 Identities=6% Similarity=0.012 Sum_probs=101.5
Q ss_pred CCCCEEEEeeCCCcEEEEEecCCCee------eEEEEeccCCCCEEEEEECCCCCeEEEEeCCCeEEEEE---CCC----
Q 042434 232 NNGEYLASSSSDCSAIIWKVLEDSKL------TLKHTLRSHQNPVSFVAWSPDDTKLLTCGNAEVLKLWD---VET---- 298 (517)
Q Consensus 232 ~~~~~l~t~~~dg~i~iw~~~~~~~~------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd---~~~---- 298 (517)
|+..++++.+.+|.|+--.+..-... .....+.. .+.+..+........|+..+..|.+.-.. +..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 45567888889998876655211000 00001122 23343444444455666667777655443 322
Q ss_pred --CcEEEEe-C-CCCCceEEEEEe---CCCCeEEEeeCCCceeEEEEeCCC------CeeEeeeCcCCCceEEEEEccCC
Q 042434 299 --GICKHTF-G-DHGFIVSSCAWF---PDSKRLVCGSSDTEKGIFMCDCDG------NEIKAWRGTRIPKVLDLAVTPDG 365 (517)
Q Consensus 299 --~~~~~~~-~-~~~~~v~~i~~~---~~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~ 365 (517)
|..+..+ . .....|.++... .++.+++..+.+|. +....... .-...+.....+.+..+....+.
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~--~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~ 157 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGT--VKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE 157 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSE--EEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTT
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCe--EEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCC
Confidence 2221111 1 234456665443 35667899999998 55554421 11122221222456665555556
Q ss_pred CEEEEEeCCCcEEEEECCCce--------EE--eeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc
Q 042434 366 ENLISVLSDKDIRILNLGTYA--------ER--VISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV 422 (517)
Q Consensus 366 ~~l~~~~~dg~i~i~d~~~~~--------~~--~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~ 422 (517)
..++..+.+|.+..++...-. .. .......+.++....++..+++.+..|..+-.++
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~ 224 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAV 224 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECG
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEH
Confidence 678888999998888764321 11 1233456666665556677888899998888877
No 406
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=36.17 E-value=2.6e+02 Score=25.70 Aligned_cols=164 Identities=8% Similarity=0.003 Sum_probs=91.7
Q ss_pred cEEEEEecCC--CeeeEEEEecc----CCCCEEEEEEC---CC----CCeEEEE-eCCCeEEEEECCCCcEEEEeC----
Q 042434 245 SAIIWKVLED--SKLTLKHTLRS----HQNPVSFVAWS---PD----DTKLLTC-GNAEVLKLWDVETGICKHTFG---- 306 (517)
Q Consensus 245 ~i~iw~~~~~--~~~~~~~~~~~----h~~~v~~l~~s---~~----~~~l~s~-~~dg~i~iwd~~~~~~~~~~~---- 306 (517)
.|.+||+.++ +... ...+.. ....+..+++. |+ +.++..+ +..+.|.|+|+.+++..+...
T Consensus 124 kLv~~DL~t~~~~li~-~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVV-RYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEE-EEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred eEEEEECCCCCceeEE-EEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 5788999876 3332 222221 23457778876 22 3344443 346789999999988766552
Q ss_pred CC--------------CCceEEEEEeCC----CCeEEEeeCCCceeEEEEeCC---C----CeeEeeeCc-CCCceEEEE
Q 042434 307 DH--------------GFIVSSCAWFPD----SKRLVCGSSDTEKGIFMCDCD---G----NEIKAWRGT-RIPKVLDLA 360 (517)
Q Consensus 307 ~~--------------~~~v~~i~~~~~----~~~l~~~~~d~~v~i~~~~~~---~----~~~~~~~~~-~~~~i~~~~ 360 (517)
.. ...+..++.+|+ ++.|......+. +++..... . ..++.+-.. .......++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence 11 236788889987 677777666552 14444321 1 112211111 112344566
Q ss_pred Ec-cCCCEEEEEeCCCcEEEEECCC-c----eEEeec---cCCCeeEEEEcCCCCEEEE
Q 042434 361 VT-PDGENLISVLSDKDIRILNLGT-Y----AERVIS---EEHPITSLSVSVDCKNFIV 410 (517)
Q Consensus 361 ~~-~~~~~l~~~~~dg~i~i~d~~~-~----~~~~~~---~~~~i~~~~~s~~~~~l~~ 410 (517)
+. .+|..+++--....|..|+..+ . ...... .-..+..+.+.++|...+.
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~ 340 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFM 340 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEE
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEE
Confidence 75 5777777777888999999876 1 112221 1223566666666544333
No 407
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=36.02 E-value=28 Score=27.33 Aligned_cols=55 Identities=20% Similarity=0.129 Sum_probs=37.7
Q ss_pred ChHHHHHHhhcccCCChhhhcccchhhhhhhhhHhhhcCChhHHHHHHHhhcccC
Q 042434 63 DWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSL 117 (517)
Q Consensus 63 ~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~a~~~lr~~~~~~ 117 (517)
.|+.....+..-.+.....-+.++.+|.+..+++.++.|++.+|+..|+++..-|
T Consensus 73 Tw~~~~~~lgl~~F~P~~QD~~A~~Li~~rgal~~i~~G~i~~a~~~la~~WASL 127 (158)
T 1am7_A 73 XXDAYRKQLGLKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSNIXASL 127 (158)
T ss_dssp HHHHHHHHHTCCCCCHHHHHHHHHHHHHHTTCHHHHHHTCHHHHHHHHTTTCTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHcCcHHHHHcCCHHHHHHHhccccccC
Confidence 4666655554323333333445777788888999999999999999998875433
No 408
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=34.51 E-value=7.1 Score=27.54 Aligned_cols=46 Identities=13% Similarity=0.309 Sum_probs=31.7
Q ss_pred cchhhhhhhhhHhhhcCChhHHHHHHHhhcccCCCChhHHhhhhhc
Q 042434 85 VLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASS 130 (517)
Q Consensus 85 ~~~~~~~~~~~el~~~~~~~~a~~~lr~~~~~~~~~~~~~~~l~~~ 130 (517)
+=|.-||...+|||..+.-..|+.++++.+-...-.....++|++.
T Consensus 48 ~GfaPYErr~mELLkvskdKrAlKf~KKRlGth~RAKrKreel~~v 93 (100)
T 3izc_k 48 AGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNI 93 (100)
T ss_dssp HHHTTSCCHHHHHHHHHTSCCSHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred hcCchhHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455699999999998888889999998764443333333444443
No 409
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=33.78 E-value=1.3e+02 Score=21.69 Aligned_cols=15 Identities=7% Similarity=-0.044 Sum_probs=8.8
Q ss_pred eEEEEcCCCCEEEEE
Q 042434 397 TSLSVSVDCKNFIVN 411 (517)
Q Consensus 397 ~~~~~s~~~~~l~~~ 411 (517)
..+.+..+|..++..
T Consensus 59 ~~l~l~~dGNLVl~d 73 (113)
T 3mez_B 59 CFMRLGHSGELDITD 73 (113)
T ss_dssp CEEEECTTSCEEEEC
T ss_pred EEEEEeCCCcEEEEC
Confidence 456666666665543
No 410
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=32.85 E-value=4.2e+02 Score=27.17 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=33.1
Q ss_pred EEEEEECCC-CCEEEEeeCCCcEEEEEec-CCCeeeEEEEec---cCCCCEEEEEECCC-CCeEEEEeCC
Q 042434 225 VWFVQFSNN-GEYLASSSSDCSAIIWKVL-EDSKLTLKHTLR---SHQNPVSFVAWSPD-DTKLLTCGNA 288 (517)
Q Consensus 225 v~~~~~s~~-~~~l~t~~~dg~i~iw~~~-~~~~~~~~~~~~---~h~~~v~~l~~s~~-~~~l~s~~~d 288 (517)
+..++++|. ...+..+...+. ||... .+..++...... .....+..+.++|. +..++++..+
T Consensus 123 ~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 123 GERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred eeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 456777773 445555553433 44443 344554332211 11246889999884 4466666554
No 411
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=32.72 E-value=28 Score=23.46 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHhhc-ChHHHHHHHhhhcCee
Q 042434 16 KYEFVRVVVQCLYSL-GYQKSASCLESESGVS 46 (517)
Q Consensus 16 ~~~~~~li~q~L~~~-g~~~s~~~l~~Esg~~ 46 (517)
.++|+.+|-++..+. ||.-|...+.++.|++
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS 37 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLS 37 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCC
Confidence 455566666666664 9999999999999995
No 412
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=32.20 E-value=22 Score=23.79 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=27.6
Q ss_pred ccccCCCCCCchHHHHHHHHHHHhhcChHHHHHHHhhhcCe
Q 042434 5 STMIGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGV 45 (517)
Q Consensus 5 ~~~~~~~~~~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~ 45 (517)
|.|.+|. ..+|+-.-|||.|++.|=--.+..+.+++|+
T Consensus 9 ~~~~~~~---~~~d~eekVLe~LkeaG~PlkageIae~~Gv 46 (80)
T 2lnb_A 9 SHMADPG---REGHLEQRILQVLTEAGSPVKLAQLVKECQA 46 (80)
T ss_dssp CCSCCSC---HHHHHHHHHHHHHHHHTSCEEHHHHHHHHTS
T ss_pred ccccCCc---ccchHHHHHHHHHHHcCCCCCHHHHHHHHCC
Confidence 3454444 4577888999999999866666677777776
No 413
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=31.47 E-value=68 Score=21.08 Aligned_cols=38 Identities=8% Similarity=-0.020 Sum_probs=29.8
Q ss_pred CCCchHHHHHHHHHHHhhcChHHH-----HHHHhhhc-CeeecC
Q 042434 12 GLIKKYEFVRVVVQCLYSLGYQKS-----ASCLESES-GVSYKS 49 (517)
Q Consensus 12 ~~~~~~~~~~li~q~L~~~g~~~s-----~~~l~~Es-g~~~~~ 49 (517)
+..+.+++...|-+.|.+..+... -+.|++.. |+.+..
T Consensus 10 ~~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~ 53 (70)
T 1q1v_A 10 KPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTE 53 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSH
T ss_pred CCcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChH
Confidence 457899999999999999987643 34688888 877763
No 414
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=31.08 E-value=70 Score=26.07 Aligned_cols=68 Identities=10% Similarity=0.000 Sum_probs=42.9
Q ss_pred HHHHHhhcccCCChhhhcccchhhhhhhhhHhhhcCChhHHHHHHHhhcccCCCChhHHhhhhhcccc
Q 042434 66 GCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLC 133 (517)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~a~~~lr~~~~~~~~~~~~~~~l~~~~~~ 133 (517)
.|+.+++.+.--.+.......-++.+|-.+=.++.|++.+|..+|++.+..-..+..--..|..++.+
T Consensus 96 SAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~ 163 (211)
T 3bqo_A 96 SALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ 163 (211)
T ss_dssp HHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 45667777655444555566666788888888899999999999998765443333333345554444
No 415
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=31.04 E-value=35 Score=27.69 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=47.8
Q ss_pred ccCCCCCCchHHHHHHHHHHHhhcChHH-HHHHHhhhcCeeecC-----hhHHHHHHHHHcCChHHHHHHhhc
Q 042434 7 MIGPRGLIKKYEFVRVVVQCLYSLGYQK-SASCLESESGVSYKS-----KGFERLEVQILNGDWDGCIDTLIA 73 (517)
Q Consensus 7 ~~~~~~~~~~~~~~~li~q~L~~~g~~~-s~~~l~~Esg~~~~~-----~~~~~~~~~i~~g~w~~~~~~l~~ 73 (517)
+..++..-.+++|+.--.+-+.+.||.. |...+-+++|++--+ ++.+.|...+..-.++.....+..
T Consensus 9 ~~~~~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~ 81 (211)
T 3him_A 9 VAELGTSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITA 81 (211)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556678999999999999999996 899999999996433 567777777765555555555544
No 416
>2xns_C RGS14, regulator of G-protein signaling 14; hydrolase-peptide complex, ADP-ribosylation, arginine finger binding, lipoprotein, nucleotide-binding; HET: GDP SRT; 3.41A {Homo sapiens}
Probab=30.88 E-value=55 Score=18.09 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=20.6
Q ss_pred CccccCCCCCCchHHHHHHHHHHHh
Q 042434 4 SSTMIGPRGLIKKYEFVRVVVQCLY 28 (517)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~li~q~L~ 28 (517)
.|+.-++++...+++++|..-.||+
T Consensus 14 s~radDQRGLL~KEdLv~~l~df~r 38 (40)
T 2xns_C 14 SSGAHDQRGLLSNEEVFRALRDFDR 38 (40)
T ss_dssp TCSCCSCSSSCCHHHHHHHHHHHTC
T ss_pred hcccccccccccHHHHHHHhHHHHh
Confidence 3555688999999999999888875
No 417
>3iz5_k 60S ribosomal protein L36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_k
Probab=30.62 E-value=7.7 Score=27.96 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=33.7
Q ss_pred cccchhhhhhhhhHhhhcCChhHHHHHHHhhcccCCCChhHHhhhhhccc
Q 042434 83 ASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSML 132 (517)
Q Consensus 83 ~~~~~~~~~~~~~el~~~~~~~~a~~~lr~~~~~~~~~~~~~~~l~~~~~ 132 (517)
+-+=|.-||...+|||..+.-..|+.++++.+-...-.....++|++++.
T Consensus 49 EV~GfAPYErR~mELLKvskDKRALKf~KKRlGth~RAKrKreel~~vl~ 98 (112)
T 3iz5_k 49 EVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLR 98 (112)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHSSCCSHHHHHHHHHTSSCCCHH
T ss_pred HHhcCchHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33567779999999999998888999998765332222233344444443
No 418
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=29.74 E-value=32 Score=27.08 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHHhhcChHHHHH-----HHhhhcCe
Q 042434 15 KKYEFVRVVVQCLYSLGYQKSAS-----CLESESGV 45 (517)
Q Consensus 15 ~~~~~~~li~q~L~~~g~~~s~~-----~l~~Esg~ 45 (517)
+.++..+-|++||+..||++.+. -++.|||+
T Consensus 13 ~~~~~a~~i~~~l~~~G~s~~~aAGilGN~~~ESg~ 48 (159)
T 3ct5_A 13 EMKVNAQYILNYLSSNGWTKQAICGMLGNMQSESTI 48 (159)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 45667789999999999998875 68999995
No 419
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=29.60 E-value=34 Score=27.37 Aligned_cols=66 Identities=23% Similarity=0.281 Sum_probs=45.2
Q ss_pred ccCCCCCCchHHHHHHHHHHHhhcChHH-HHHHHhhhcCeeecC-----hhHHHHHHHHHcCChHHHHHHhh
Q 042434 7 MIGPRGLIKKYEFVRVVVQCLYSLGYQK-SASCLESESGVSYKS-----KGFERLEVQILNGDWDGCIDTLI 72 (517)
Q Consensus 7 ~~~~~~~~~~~~~~~li~q~L~~~g~~~-s~~~l~~Esg~~~~~-----~~~~~~~~~i~~g~w~~~~~~l~ 72 (517)
|..++..-.+++|+.-..+-+.+.||.. |...+-+++|++-.+ ++.+.|..++..--++.....+.
T Consensus 2 m~~~~~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~ 73 (195)
T 3ppb_A 2 MTASSKRTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQ 73 (195)
T ss_dssp ------CCHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666789999999999999999976 589999999996432 45666766666544555444443
No 420
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=29.27 E-value=32 Score=27.57 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=44.5
Q ss_pred ccccCCCCCCchHHHHHHHHHHHhhcChH-HHHHHHhhhcCeeec----C-hhHHHHHHHHHcCChHHHHHHhh
Q 042434 5 STMIGPRGLIKKYEFVRVVVQCLYSLGYQ-KSASCLESESGVSYK----S-KGFERLEVQILNGDWDGCIDTLI 72 (517)
Q Consensus 5 ~~~~~~~~~~~~~~~~~li~q~L~~~g~~-~s~~~l~~Esg~~~~----~-~~~~~~~~~i~~g~w~~~~~~l~ 72 (517)
++|..++..-.++.|+.--.+-+.+.||. -|...+-+++|++-. . ++.+.|..++..--++.....+.
T Consensus 2 ~~M~~~~~~~~r~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~ 75 (196)
T 3he0_A 2 NAMTDNPAVDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRLNVAKRIASAVQ 75 (196)
T ss_dssp ---------CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccchHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45766676788999999999999999998 678999999999632 2 56677777666444444444443
No 421
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=29.14 E-value=20 Score=23.11 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=17.4
Q ss_pred chHHHHHHHHHHHhhcChHH
Q 042434 15 KKYEFVRVVVQCLYSLGYQK 34 (517)
Q Consensus 15 ~~~~~~~li~q~L~~~g~~~ 34 (517)
...|++.||.+.|+..||++
T Consensus 61 qakelleliarllqklgykd 80 (96)
T 2jvf_A 61 QAKELLELIARLLQKLGYKD 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHhCCCc
Confidence 35789999999999999974
No 422
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=28.95 E-value=1.6e+02 Score=20.99 Aligned_cols=14 Identities=14% Similarity=0.074 Sum_probs=8.3
Q ss_pred eEEEEcCCCCEEEE
Q 042434 397 TSLSVSVDCKNFIV 410 (517)
Q Consensus 397 ~~~~~s~~~~~l~~ 410 (517)
..+.+..||..++.
T Consensus 53 ~~L~l~~dGnLvL~ 66 (105)
T 4h3o_A 53 CSAVLQSDGNFVVY 66 (105)
T ss_dssp CEEEECTTSCEEEE
T ss_pred EEEEEeCCccEEEE
Confidence 34666666665554
No 423
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=28.48 E-value=2.3e+02 Score=22.75 Aligned_cols=109 Identities=12% Similarity=0.053 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHHH-----------------H-HHHHHcCChHHHHHHhhcccCC
Q 042434 16 KYEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFER-----------------L-EVQILNGDWDGCIDTLIAITDL 77 (517)
Q Consensus 16 ~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~-----------------~-~~~i~~g~w~~~~~~l~~~~~~ 77 (517)
-++++..-..++....|.++...+++-..+..+.+..-. + ......|++++|+..+...-..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 356677777888888899999888876543222211111 1 2234789999999888765221
Q ss_pred ChhhhcccchhhhhhhhhHhhhcCChhHHHHHHHhhcccCCCChhHHhhhhh
Q 042434 78 NDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLAS 129 (517)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~el~~~~~~~~a~~~lr~~~~~~~~~~~~~~~l~~ 129 (517)
.+... ..+-..=.-+...|++.+|+..+++.+.--..+.+.+..+..
T Consensus 84 ~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 130 (208)
T 3urz_A 84 APNNV-----DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGN 130 (208)
T ss_dssp CTTCH-----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 11100 111111112235689999999999876543334444444443
No 424
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=27.64 E-value=44 Score=24.81 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=22.3
Q ss_pred ccCCCCCCch---HHHHHHHHHHHhhcChHH
Q 042434 7 MIGPRGLIKK---YEFVRVVVQCLYSLGYQK 34 (517)
Q Consensus 7 ~~~~~~~~~~---~~~~~li~q~L~~~g~~~ 34 (517)
+-+|+..-|+ .+.++-|.+||.++||..
T Consensus 4 ~kDpRpl~Dk~~q~~~~~~i~~fL~~~~~~~ 34 (120)
T 2igp_A 4 MKDPRPLNDKAFIQQCIRQLCEFLTENGYAH 34 (120)
T ss_dssp --CCCCTTCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 4567767777 889999999999999964
No 425
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=27.51 E-value=1.7e+02 Score=20.84 Aligned_cols=92 Identities=5% Similarity=-0.097 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhH-HHH-HHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhhh
Q 042434 18 EFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGF-ERL-EVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFL 95 (517)
Q Consensus 18 ~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~-~~~-~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (517)
.+..+-..++....|.++...+++--.+.-+.... ..+ .-....|+|++|+..+...-..+... ...+-..-.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~ 80 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-----VRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----HHHHHHHHH
Confidence 34455566777778999988887765443222211 111 22347899999988887642211111 111111112
Q ss_pred HhhhcCChhHHHHHHHhhc
Q 042434 96 EYLNRGDDSLALNVLRKRV 114 (517)
Q Consensus 96 el~~~~~~~~a~~~lr~~~ 114 (517)
-+...|++.+|+..+++.+
T Consensus 81 ~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 81 AQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHH
Confidence 2335688999999888764
No 426
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=26.80 E-value=34 Score=20.92 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHhhc
Q 042434 16 KYEFVRVVVQCLYSL 30 (517)
Q Consensus 16 ~~~~~~li~q~L~~~ 30 (517)
+++++..|.|||+..
T Consensus 2 ~K~la~sIi~FL~~~ 16 (52)
T 4gof_A 2 KKRLAYAIIQFLHDQ 16 (52)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHh
Confidence 457999999999763
No 427
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=26.56 E-value=1.8e+02 Score=20.86 Aligned_cols=92 Identities=17% Similarity=0.015 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHHHH--HHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhhh
Q 042434 18 EFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFERL--EVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFL 95 (517)
Q Consensus 18 ~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~~--~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (517)
+...+-..++....|.++...+++-....-+....-.. .-....|++++|+..+...-..+..... .+-..-.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~-----~~~~la~ 93 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA-----VHAALAV 93 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----HHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHH
Confidence 45666667777777888888777655443322221111 1234678888888777754221111000 1111111
Q ss_pred HhhhcCChhHHHHHHHhhc
Q 042434 96 EYLNRGDDSLALNVLRKRV 114 (517)
Q Consensus 96 el~~~~~~~~a~~~lr~~~ 114 (517)
-+...|+..+|+..+++.+
T Consensus 94 ~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 1224467788888887654
No 428
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=26.38 E-value=1.9e+02 Score=21.72 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=42.0
Q ss_pred HHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhhhHhhhcCChhHHHHHHHhhcccCCCChhHHhhhhhcccc
Q 042434 58 QILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLC 133 (517)
Q Consensus 58 ~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~a~~~lr~~~~~~~~~~~~~~~l~~~~~~ 133 (517)
....|+|++|+..+...-..++.. ...+...=.-+...+++++|+..+++.+.--..+.+.+..++.+...
T Consensus 41 y~~~~~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 41 YYEAKEYDLAKKYICTYINVQERD-----PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 457799999998888652211111 11111111222356899999999998865444455666666665544
No 429
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=26.21 E-value=4.5e+02 Score=26.33 Aligned_cols=68 Identities=12% Similarity=0.078 Sum_probs=41.8
Q ss_pred cEEEEEEC----CCC---CEEEEeeCCCcEEEE-EecCCCeeeEEEE--eccCCCCEEEEEECCCC--CeEEEEeCCCeE
Q 042434 224 EVWFVQFS----NNG---EYLASSSSDCSAIIW-KVLEDSKLTLKHT--LRSHQNPVSFVAWSPDD--TKLLTCGNAEVL 291 (517)
Q Consensus 224 ~v~~~~~s----~~~---~~l~t~~~dg~i~iw-~~~~~~~~~~~~~--~~~h~~~v~~l~~s~~~--~~l~s~~~dg~i 291 (517)
..+.|+.. .++ ..+..|+.+|.|.=. .... .. ..+.. ......+|..|.++++. .+|++++.++.+
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~-~~-~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~ 475 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEH-AV-HIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVV 475 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSS-SE-EEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCC-Cc-eEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEE
Confidence 35666652 344 367788999987433 3322 21 12222 22345789999999987 889888877655
Q ss_pred EE
Q 042434 292 KL 293 (517)
Q Consensus 292 ~i 293 (517)
+|
T Consensus 476 ~v 477 (663)
T 1olz_A 476 QA 477 (663)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 430
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=26.11 E-value=1.5e+02 Score=21.59 Aligned_cols=89 Identities=12% Similarity=0.207 Sum_probs=45.8
Q ss_pred HHHhhcChHHHHHHHhhhcCeeecChhHH---HH-HHHHHcCChHHHHHHhhcccCCChhhhcc--cchhhhhhhhhHhh
Q 042434 25 QCLYSLGYQKSASCLESESGVSYKSKGFE---RL-EVQILNGDWDGCIDTLIAITDLNDERRAS--VLFPVFKQCFLEYL 98 (517)
Q Consensus 25 q~L~~~g~~~s~~~l~~Esg~~~~~~~~~---~~-~~~i~~g~w~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~el~ 98 (517)
.+.+...|.++...+++--.+ ++.... .+ .-....|+|++|+..+...-......... .+-.++-..=.-+.
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~ 94 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ 94 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 455666788888877765433 332212 12 22357799999988776541111110000 00011111111123
Q ss_pred hcCChhHHHHHHHhhcc
Q 042434 99 NRGDDSLALNVLRKRVS 115 (517)
Q Consensus 99 ~~~~~~~a~~~lr~~~~ 115 (517)
..+++.+|+..+++.+.
T Consensus 95 ~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 95 KQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 45889999998887654
No 431
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=25.42 E-value=52 Score=21.88 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=14.5
Q ss_pred CchHHHHHHHHHHHhhc
Q 042434 14 IKKYEFVRVVVQCLYSL 30 (517)
Q Consensus 14 ~~~~~~~~li~q~L~~~ 30 (517)
-+++++...|.|||+..
T Consensus 5 ~~~K~la~sIi~FL~~~ 21 (74)
T 2lxb_A 5 ASKEEIAALIVNYFSSI 21 (74)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 46889999999999864
No 432
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.39 E-value=1.9e+02 Score=23.92 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=40.5
Q ss_pred cCCChhhhcccchhhhhhhhhHhhhcCChhHHHHHHHhhcccCCCChhHHhhhhhcccc
Q 042434 75 TDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSMLC 133 (517)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~a~~~lr~~~~~~~~~~~~~~~l~~~~~~ 133 (517)
..+.+.......-++.+|-.+=.++.|++.+|..+|++.+..-.....--..|..++.+
T Consensus 102 ~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 102 FTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 33445566666777788888888899999999999998876432222233356666665
No 433
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=25.35 E-value=1.8e+02 Score=20.38 Aligned_cols=92 Identities=5% Similarity=0.009 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhcChHHHHHHHhhhcCeeecChhH-HHH-HHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhhhH
Q 042434 19 FVRVVVQCLYSLGYQKSASCLESESGVSYKSKGF-ERL-EVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLE 96 (517)
Q Consensus 19 ~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~-~~~-~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e 96 (517)
...+...++....|.++...+++-.....+.... ..+ .-....|+|++|+..+...-...... ...+-..-.-
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~ 89 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-----SKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-----HHHHHHHHHH
Confidence 3444455556666888888777654332222211 111 22357899999998887652211110 1111111112
Q ss_pred hhhcCChhHHHHHHHhhcc
Q 042434 97 YLNRGDDSLALNVLRKRVS 115 (517)
Q Consensus 97 l~~~~~~~~a~~~lr~~~~ 115 (517)
+...+++.+|+..+++.+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 2356889999999987654
No 434
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=25.17 E-value=38 Score=26.18 Aligned_cols=46 Identities=26% Similarity=0.336 Sum_probs=36.2
Q ss_pred chHHHHHHHHHHHhhcChHH-HHHHHhhhcCeeecC-----hhHHHHHHHHH
Q 042434 15 KKYEFVRVVVQCLYSLGYQK-SASCLESESGVSYKS-----KGFERLEVQIL 60 (517)
Q Consensus 15 ~~~~~~~li~q~L~~~g~~~-s~~~l~~Esg~~~~~-----~~~~~~~~~i~ 60 (517)
.++.|+.-.++-+.+.||.. |...+-+++|++..+ ++.+.|..++.
T Consensus 15 ~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~ 66 (156)
T 3ljl_A 15 TIQKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGISHHFPKKTDFTAALD 66 (156)
T ss_dssp HHHHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhChhhcCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
Confidence 48889999999999999996 789999999996432 34555665555
No 435
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=24.19 E-value=5.6e+02 Score=25.79 Aligned_cols=148 Identities=9% Similarity=-0.043 Sum_probs=73.4
Q ss_pred cCCCEEEEEeCCCcEEEEECCCc--eEEeeccCCCeeEEEEcCCCCEEEEEeCCCeEEEEEc---CCC---CccceEEeC
Q 042434 363 PDGENLISVLSDKDIRILNLGTY--AERVISEEHPITSLSVSVDCKNFIVNLNSQEIHMWDV---AGK---WEKPFKYTG 434 (517)
Q Consensus 363 ~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~i~~~d~---~~~---~~~~~~~~~ 434 (517)
++....++.+.+|.|+--.-... ..........+..+........++.-+..|.++.... ... ...+..+..
T Consensus 470 ~~e~v~v~ls~~GyiKr~~g~~~~~~~~~~k~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~~~~G~~i~~ll~ 549 (716)
T 1zvu_A 470 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLT 549 (716)
T ss_dssp CCCCCCEEEETTTEEEECCC---------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCCC---CBSTTTSC
T ss_pred CCceEEEEEecCCeEeccCCCCcCccccccCCCCeEEEEEEecCCCEEEEEecCCcEEEEEeeecccccccCeeHHhccC
Confidence 45566778888898875211100 0011112223334444444556666677776554433 221 011111111
Q ss_pred cccCceEEEeecCCCCCcEEEEecCCCcEEEEecCC-------CceeEEecCCCCCeeEEEecCCCCcEEEEeeCCCcEE
Q 042434 435 HSQNKYVIRSCFGGLDGTFIASGSENSQIYIWNRRN-------SKPIEILSGHSMTVNCVSWNPKRPKMLASASDDHTIR 507 (517)
Q Consensus 435 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~v~ 507 (517)
.......+..+.. .++.+++.++..|.++...+.. |...-.+.. .+.+..+....++...++..+.+|.+.
T Consensus 550 l~~~e~i~~~~~~-~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~-~d~lv~~~~~~~~~~~v~l~t~~g~~l 627 (716)
T 1zvu_A 550 LPPGATVDHMLME-SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRML 627 (716)
T ss_dssp CCTTCCEEEEECC-CTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEE
T ss_pred CCCCCeEEEEEEe-cCCceEEEEeCCceEEEecHHHhcccCccceEEEeeCC-CCEEEEEEEecCCCCEEEEEeCCCeEE
Confidence 1222233333333 3567888889999999887542 223333433 344445445433224678888899888
Q ss_pred EeCCC
Q 042434 508 IWGPC 512 (517)
Q Consensus 508 iw~~~ 512 (517)
.|...
T Consensus 628 rf~~~ 632 (716)
T 1zvu_A 628 MFPVS 632 (716)
T ss_dssp EEEST
T ss_pred EEEHH
Confidence 88764
No 436
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=23.98 E-value=34 Score=24.50 Aligned_cols=23 Identities=13% Similarity=0.378 Sum_probs=20.7
Q ss_pred CCCchHHHHHHHHHHHhhcChHH
Q 042434 12 GLIKKYEFVRVVVQCLYSLGYQK 34 (517)
Q Consensus 12 ~~~~~~~~~~li~q~L~~~g~~~ 34 (517)
...++.||+..|++|-+++|+++
T Consensus 33 ~~~sR~eVvk~lW~YIK~nnLQd 55 (101)
T 1v32_A 33 EMISRYDVSDTIAKYISKEGLLD 55 (101)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCBC
T ss_pred cccCHHHHHHHHHHHHHhhcCcC
Confidence 45899999999999999999875
No 437
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=23.76 E-value=2.4e+02 Score=21.33 Aligned_cols=93 Identities=9% Similarity=0.035 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhH-HHH-HHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhhh
Q 042434 18 EFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGF-ERL-EVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFL 95 (517)
Q Consensus 18 ~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~-~~~-~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (517)
.+..+-..++....|.++...+++-..+.-+.... ..+ .-....|+|++|+..+...-...... ...+-..-.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~ 87 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-----SKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHH
Confidence 34455556666777999988888765443322221 122 23457899999998887652221111 111111112
Q ss_pred HhhhcCChhHHHHHHHhhcc
Q 042434 96 EYLNRGDDSLALNVLRKRVS 115 (517)
Q Consensus 96 el~~~~~~~~a~~~lr~~~~ 115 (517)
-+...+++.+|+..+++.+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 22356899999999987643
No 438
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=23.54 E-value=45 Score=27.05 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=34.0
Q ss_pred cCCCCCCchHHHHHHHHHHHhhcChHH-HHHHHhhhcCee
Q 042434 8 IGPRGLIKKYEFVRVVVQCLYSLGYQK-SASCLESESGVS 46 (517)
Q Consensus 8 ~~~~~~~~~~~~~~li~q~L~~~g~~~-s~~~l~~Esg~~ 46 (517)
.+++..-.++.|+.--.+-+.+.||.. |...+-+++|++
T Consensus 11 ~~~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs 50 (207)
T 2rae_A 11 IGRRPSTTQDRISTVGIELFTEQGFDATSVDEVAEASGIA 50 (207)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSC
T ss_pred cccchHhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCC
Confidence 455667789999999999999999974 889999999995
No 439
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=22.90 E-value=3.2e+02 Score=26.54 Aligned_cols=72 Identities=8% Similarity=-0.021 Sum_probs=44.9
Q ss_pred cCcEEEEEECCC--CCEEEEeeCCCcEEEEEecCCCee-eEEEE--eccCCCCEE-EEEECCCCCeEEEEeCCCeEEE
Q 042434 222 KNEVWFVQFSNN--GEYLASSSSDCSAIIWKVLEDSKL-TLKHT--LRSHQNPVS-FVAWSPDDTKLLTCGNAEVLKL 293 (517)
Q Consensus 222 ~~~v~~~~~s~~--~~~l~t~~~dg~i~iw~~~~~~~~-~~~~~--~~~h~~~v~-~l~~s~~~~~l~s~~~dg~i~i 293 (517)
....++++.... -..+..|+.+|.|.=..+..+... ..... +.....+|. .|.+++++.+|++++.++.++|
T Consensus 399 ~~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 399 RDRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SSCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ccceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 345777776553 346778899998765555433211 12222 223356785 8999999999999887754444
No 440
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=22.87 E-value=51 Score=15.80 Aligned_cols=13 Identities=23% Similarity=0.064 Sum_probs=9.1
Q ss_pred HHHHHHHHhhcCh
Q 042434 20 VRVVVQCLYSLGY 32 (517)
Q Consensus 20 ~~li~q~L~~~g~ 32 (517)
-.|+.|+|++-|-
T Consensus 3 qellgqwlkdggp 15 (26)
T 1rij_A 3 QELLGQWLKDGGP 15 (26)
T ss_dssp HHHHHHHHHTTGG
T ss_pred HHHHHHHHHcCCC
Confidence 3567788887763
No 441
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=22.68 E-value=2.7e+02 Score=24.02 Aligned_cols=91 Identities=9% Similarity=0.117 Sum_probs=48.2
Q ss_pred HHHHHH-HHHHhhcChHHHHHHHhhhcCeeecChhHHH-HHHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhhh
Q 042434 18 EFVRVV-VQCLYSLGYQKSASCLESESGVSYKSKGFER-LEVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFL 95 (517)
Q Consensus 18 ~~~~li-~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~-~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (517)
++..+. .-++....|.++...|++ +-+...... ..-....|++++|+..+..+....+. .....+. .-+.
T Consensus 102 ~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~---~~~~~l~-~a~~ 173 (291)
T 3mkr_A 102 TFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED---ATLTQLA-TAWV 173 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC---cHHHHHH-HHHH
Confidence 343333 334555669999999988 212222111 23344789999999988876322111 1111111 1122
Q ss_pred Hhh-hcCChhHHHHHHHhhccc
Q 042434 96 EYL-NRGDDSLALNVLRKRVSS 116 (517)
Q Consensus 96 el~-~~~~~~~a~~~lr~~~~~ 116 (517)
.+. ..+++++|+.++++.+..
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHh
Confidence 222 346778888888766543
No 442
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=22.57 E-value=60 Score=22.55 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=14.8
Q ss_pred CCchHHHHHHHHHHHhhc
Q 042434 13 LIKKYEFVRVVVQCLYSL 30 (517)
Q Consensus 13 ~~~~~~~~~li~q~L~~~ 30 (517)
..++++++..|.|||+..
T Consensus 16 ~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 16 SASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHh
Confidence 345789999999999864
No 443
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=22.32 E-value=65 Score=27.19 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=38.7
Q ss_pred CCCCCCchHHHHHHHHHHHhhcChHH-HHHHHhhhcCeeecC-----hhHHHHHHHHH
Q 042434 9 GPRGLIKKYEFVRVVVQCLYSLGYQK-SASCLESESGVSYKS-----KGFERLEVQIL 60 (517)
Q Consensus 9 ~~~~~~~~~~~~~li~q~L~~~g~~~-s~~~l~~Esg~~~~~-----~~~~~~~~~i~ 60 (517)
.++...+++.|+.--++-+.+.||.. |...+-++.|++--+ ++.+.|...+.
T Consensus 11 ~~~~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~~~ 68 (237)
T 2hxo_A 11 RRQEPLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYWHITGKAELLGAAT 68 (237)
T ss_dssp -----CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGGTCCCHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHhcCcccCCHHHHHHHHCCChHHHHHhcCCHHHHHHHHH
Confidence 44567889999999999999999997 899999999996422 45666666554
No 444
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=22.32 E-value=1.2e+02 Score=21.72 Aligned_cols=29 Identities=10% Similarity=-0.020 Sum_probs=24.6
Q ss_pred cCCCCCCchHHHHHHHHHHHhhcChHHHH
Q 042434 8 IGPRGLIKKYEFVRVVVQCLYSLGYQKSA 36 (517)
Q Consensus 8 ~~~~~~~~~~~~~~li~q~L~~~g~~~s~ 36 (517)
+.....+|..+|.+=|-++|+.++..++.
T Consensus 11 ~~~~~~ldTk~I~~~ike~L~~~~isQ~~ 39 (101)
T 1x2l_A 11 GAEEEQLDTAEIAFQVKEQLLKHNIGQRV 39 (101)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTCCHHH
T ss_pred CCCcCccCHHHHHHHHHHHHHHcCCCHHH
Confidence 55566899999999999999999987743
No 445
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=22.28 E-value=3.9e+02 Score=27.07 Aligned_cols=56 Identities=9% Similarity=0.036 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhcC-hHHHHHHHhhhcCeeecC-hhHHHHH-HHHHcCChHHHHHHhhc
Q 042434 18 EFVRVVVQCLYSLG-YQKSASCLESESGVSYKS-KGFERLE-VQILNGDWDGCIDTLIA 73 (517)
Q Consensus 18 ~~~~li~q~L~~~g-~~~s~~~l~~Esg~~~~~-~~~~~~~-~~i~~g~w~~~~~~l~~ 73 (517)
+....+...+.+.| |.++.+.+++--.+.-+. .....+- -....|++++|+..+++
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~ 68 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444443 666666555543332222 1112221 12355666666666554
No 446
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=22.17 E-value=3.5e+02 Score=23.55 Aligned_cols=95 Identities=14% Similarity=0.053 Sum_probs=57.0
Q ss_pred CchHHHHHHHHHHHhhcC-hHHHHHHHhhhcCeeecChhHHHHHH---HHHcCChHHHHHHhhcccCCChhhh-cccchh
Q 042434 14 IKKYEFVRVVVQCLYSLG-YQKSASCLESESGVSYKSKGFERLEV---QILNGDWDGCIDTLIAITDLNDERR-ASVLFP 88 (517)
Q Consensus 14 ~~~~~~~~li~q~L~~~g-~~~s~~~l~~Esg~~~~~~~~~~~~~---~i~~g~w~~~~~~l~~~~~~~~~~~-~~~~~~ 88 (517)
.+++++-..-...|.+.| |.++.+.|++=.- .++.....+.. +...++|++|+..+.......+... ..+.|
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~- 175 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGV- 175 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHH-
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHH-
Confidence 467777777777777777 9998888865432 22322233322 4588999999999975532211110 00111
Q ss_pred hhhhhhhHhhhcCChhHHHHHHHhhc
Q 042434 89 VFKQCFLEYLNRGDDSLALNVLRKRV 114 (517)
Q Consensus 89 ~~~~~~~el~~~~~~~~a~~~lr~~~ 114 (517)
+-- .-+...|.+.+|+..+++.+
T Consensus 176 -~LG--~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 176 -AHG--VAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp -HHH--HHHHHTTCHHHHHHHHHHHH
T ss_pred -HHH--HHHHHCCCHHHHHHHHHHHh
Confidence 111 12335689999999999875
No 447
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=22.06 E-value=48 Score=26.43 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=45.7
Q ss_pred ccCCCCCCchHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecC-----hhHHHHHHHHHcCChHHHHHHh
Q 042434 7 MIGPRGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKS-----KGFERLEVQILNGDWDGCIDTL 71 (517)
Q Consensus 7 ~~~~~~~~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~-----~~~~~~~~~i~~g~w~~~~~~l 71 (517)
|..++..-.+++|+.--.+-+.+.||.-|...+-+++|++--+ ++.+.|..++..--++.....+
T Consensus 2 M~~~~~~~~r~~Il~aA~~lf~~~G~~~t~~~IA~~aGvs~~tly~~F~sK~~L~~~~~~~~~~~~~~~~ 71 (190)
T 3jsj_A 2 MTTEVKQSPRERLLEAAAALTYRDGVGIGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSAAFVAKA 71 (190)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3334456689999999999999999997789999999996422 5666776666655555554444
No 448
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=21.83 E-value=2e+02 Score=22.20 Aligned_cols=111 Identities=11% Similarity=0.059 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHH-HH-HHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhh
Q 042434 17 YEFVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFE-RL-EVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCF 94 (517)
Q Consensus 17 ~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~-~~-~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (517)
+..+.+-..++....|.++...+++-....-+..... .+ .-....|+|++|+..+........ .. ....+. -.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~--~~~~~~--~~ 81 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN--SYKSLI--AK 81 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH--HHHHHH--HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch--HHHHHH--HH
Confidence 4567778888899999999988877654433332222 22 224578999999999987632211 00 011111 11
Q ss_pred hHhhhcCChhHHHHHHHhhcccCCCChhHHhhhhhccc
Q 042434 95 LEYLNRGDDSLALNVLRKRVSSLQMSKDTIHNLASSML 132 (517)
Q Consensus 95 ~el~~~~~~~~a~~~lr~~~~~~~~~~~~~~~l~~~~~ 132 (517)
+.+....+..+|+..+++.+.....+......++.++.
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~ 119 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYN 119 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 22222223345677777665433334444445555444
No 449
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=21.62 E-value=12 Score=27.02 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=20.8
Q ss_pred HHhhhcCeeecChhHHHHHHHHHcCChHHHHHHhhcc
Q 042434 38 CLESESGVSYKSKGFERLEVQILNGDWDGCIDTLIAI 74 (517)
Q Consensus 38 ~l~~Esg~~~~~~~~~~~~~~i~~g~w~~~~~~l~~~ 74 (517)
.+-++||++++..+. - -..+|+|+++.++++.+
T Consensus 40 ~vi~~sGL~y~~~pm---g-T~IEGe~devm~vvk~~ 72 (106)
T 1vk8_A 40 EKISSWGMKYEVGPS---N-TTVEGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHTTCSCEEECSS---C-EEEEECHHHHHHHHHHH
T ss_pred HHHHHcCCCeEeCCC---c-cEEEcCHHHHHHHHHHH
Confidence 334568887754221 0 12569999999888765
No 450
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=21.57 E-value=56 Score=26.68 Aligned_cols=32 Identities=9% Similarity=0.202 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHhhhcCee
Q 042434 15 KKYEFVRVVVQCLYSLGYQKSASCLESESGVS 46 (517)
Q Consensus 15 ~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~ 46 (517)
...+++..|.+++.+.||.-|...|.++.|++
T Consensus 6 ~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~ 37 (196)
T 3k2z_A 6 RQRKVLLFIEEFIEKNGYPPSVREIARRFRIT 37 (196)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCC
Confidence 35689999999999999999999999999886
No 451
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=21.17 E-value=1e+02 Score=24.88 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=49.0
Q ss_pred CCCchHHHHHHHHHHHhhcChHH-HHHHHhhhcCeeecC-----hhHHHHHHHHHcCChHHHHHHhhcc
Q 042434 12 GLIKKYEFVRVVVQCLYSLGYQK-SASCLESESGVSYKS-----KGFERLEVQILNGDWDGCIDTLIAI 74 (517)
Q Consensus 12 ~~~~~~~~~~li~q~L~~~g~~~-s~~~l~~Esg~~~~~-----~~~~~~~~~i~~g~w~~~~~~l~~~ 74 (517)
..-.+++|+.--.+-+.+.||.. |...+-+++|++--+ ++.+.|..++..-.++.....+...
T Consensus 8 ~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~ 76 (216)
T 3s5r_A 8 DKNTRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHYYFKTRDSLLDTIIEERIGRIIDMIWEP 76 (216)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHHHHHCSSHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44578999999999999999995 889999999996432 5677787777776777666665544
No 452
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=21.11 E-value=3.9e+02 Score=22.79 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhcChHHHHHHHhhhcCeeecChhHHH-------HHH-HHHcCChHHHHHHhhcccCCChhhhcc-cchhh
Q 042434 19 FVRVVVQCLYSLGYQKSASCLESESGVSYKSKGFER-------LEV-QILNGDWDGCIDTLIAITDLNDERRAS-VLFPV 89 (517)
Q Consensus 19 ~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~~~~~~-------~~~-~i~~g~w~~~~~~l~~~~~~~~~~~~~-~~~~~ 89 (517)
+...+..++....|.++...+++.-......+.... +.. ....|++++|+..+...-......... ....+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 444567778888888888888776553332322121 111 124568888887776542111000010 00111
Q ss_pred hhhhhhHhhhcCChhHHHHHHHhhcc
Q 042434 90 FKQCFLEYLNRGDDSLALNVLRKRVS 115 (517)
Q Consensus 90 ~~~~~~el~~~~~~~~a~~~lr~~~~ 115 (517)
+-..-.-..+.|++++|+..+++.+.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22222223356788888888887763
No 453
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=20.90 E-value=1.5e+02 Score=20.24 Aligned_cols=51 Identities=4% Similarity=0.045 Sum_probs=27.1
Q ss_pred HHcCChHHHHHHhhcccCCChhhhcccchhhhhhhhhHhhhcCChhHHHHHHHhhc
Q 042434 59 ILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRGDDSLALNVLRKRV 114 (517)
Q Consensus 59 i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~a~~~lr~~~ 114 (517)
...|+|++|+..+...-....... ..+-..=.-+...|++++|+..+++.+
T Consensus 18 ~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 18 LKHDNASRALALFEELVETDPDYV-----GTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCT-----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456888888877775422111100 011111112234588888888888764
No 454
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=20.76 E-value=98 Score=24.53 Aligned_cols=55 Identities=16% Similarity=0.058 Sum_probs=38.7
Q ss_pred CCCchHHHHHHHHHHHhhcChHH-HHHHHhhhcCeeecC-----hhHHHHHHHHHcCChHH
Q 042434 12 GLIKKYEFVRVVVQCLYSLGYQK-SASCLESESGVSYKS-----KGFERLEVQILNGDWDG 66 (517)
Q Consensus 12 ~~~~~~~~~~li~q~L~~~g~~~-s~~~l~~Esg~~~~~-----~~~~~~~~~i~~g~w~~ 66 (517)
..-.+++|+.--.+-+.+.||.. |...+-+++|++--+ ++.+.|..++..-..+.
T Consensus 10 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~ 70 (199)
T 3on2_A 10 HGSLRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAPSKHFRDRQALLDALAESGFLR 70 (199)
T ss_dssp CCCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----CCCSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34568899999999999999997 899999999996432 55666666665433333
No 455
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=20.49 E-value=37 Score=22.99 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=26.3
Q ss_pred CchHHHHHHHHHHHhhcChHHHHHHHhhhcCeee
Q 042434 14 IKKYEFVRVVVQCLYSLGYQKSASCLESESGVSY 47 (517)
Q Consensus 14 ~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~ 47 (517)
.+-.++-.-|++||+..| ..|+..|.++-|++-
T Consensus 7 ~~~~~~~~~IL~~Lk~~g-~~ta~eiA~~Lgit~ 39 (79)
T 1xmk_A 7 LDMAEIKEKICDYLFNVS-DSSALNLAKNIGLTK 39 (79)
T ss_dssp HHHHHHHHHHHHHHHHTC-CEEHHHHHHHHCGGG
T ss_pred ccchhHHHHHHHHHHHcC-CcCHHHHHHHcCCCc
Confidence 356688889999999999 567888888888743
No 456
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=20.47 E-value=3.5e+02 Score=22.03 Aligned_cols=87 Identities=9% Similarity=-0.118 Sum_probs=37.5
Q ss_pred HHHHhhcChHHHHHHHhhhcCeeecChhH-HHH-HHHHHcCChHHHHHHhhcccCCChhhhcccchhhhhhhhhHhhhcC
Q 042434 24 VQCLYSLGYQKSASCLESESGVSYKSKGF-ERL-EVQILNGDWDGCIDTLIAITDLNDERRASVLFPVFKQCFLEYLNRG 101 (517)
Q Consensus 24 ~q~L~~~g~~~s~~~l~~Esg~~~~~~~~-~~~-~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~el~~~~ 101 (517)
..++....|.++...+++--....+.... ..+ .-....|+|++|+..+...-..... ...++...-.-+...+
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-----NARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTT
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----cHHHHHHHHHHHHHHh
Confidence 33444445666666665543222111111 111 2234567777777666654111100 0011111111223456
Q ss_pred ChhHHHHHHHhhcc
Q 042434 102 DDSLALNVLRKRVS 115 (517)
Q Consensus 102 ~~~~a~~~lr~~~~ 115 (517)
++.+|+..+++.+.
T Consensus 120 ~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 120 RYEEAYQRLLEASQ 133 (252)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666554
No 457
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=20.34 E-value=46 Score=26.70 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=39.4
Q ss_pred CCCCchHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecC-----hhHHHHHHHHHcCChHH
Q 042434 11 RGLIKKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKS-----KGFERLEVQILNGDWDG 66 (517)
Q Consensus 11 ~~~~~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~-----~~~~~~~~~i~~g~w~~ 66 (517)
+..-.+++|+.--.+-+.+.||.-|...+-+++|++--+ ++.+.|..++..-.++.
T Consensus 12 ~~~~~r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~ 72 (194)
T 2q24_A 12 DAQRNRDKILAAAVRVFSEEGLDAHLERIAREAGVGSGTLYRNFPTREALIEAAYRNEVAR 72 (194)
T ss_dssp ----CHHHHHHHHHHHHHHHCTTCCHHHHHHHTTCCHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHhCCChHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 334568899999999999999998889999999996432 45566665555333333
No 458
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.33 E-value=2.5e+02 Score=20.28 Aligned_cols=96 Identities=9% Similarity=0.009 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHhhcChHHHHHHHhhhcCeeecC---h-hHHHH-HHHHHcCChHHHHHHhhcccCCChhhhcccchhh
Q 042434 15 KKYEFVRVVVQCLYSLGYQKSASCLESESGVSYKS---K-GFERL-EVQILNGDWDGCIDTLIAITDLNDERRASVLFPV 89 (517)
Q Consensus 15 ~~~~~~~li~q~L~~~g~~~s~~~l~~Esg~~~~~---~-~~~~~-~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~ 89 (517)
+-+....+-..++....|.++...+++-..+.-+. . ....+ ......|+|++|+..+...-..... . ...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~--~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG---D--VKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC---C--HHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc---C--HHH
Confidence 45566667777778888999999888876553332 1 11111 2245789999999888764211111 0 111
Q ss_pred hhhhhhHhhhcCChhHHHHHHHhhcc
Q 042434 90 FKQCFLEYLNRGDDSLALNVLRKRVS 115 (517)
Q Consensus 90 ~~~~~~el~~~~~~~~a~~~lr~~~~ 115 (517)
+-..-.-+...+++.+|+..+++.+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111122345889999999997754
No 459
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=20.27 E-value=67 Score=25.67 Aligned_cols=39 Identities=10% Similarity=0.177 Sum_probs=33.2
Q ss_pred CCCCCCchHHHHHHHHHHHhhcChH-HHHHHHhhhcCeee
Q 042434 9 GPRGLIKKYEFVRVVVQCLYSLGYQ-KSASCLESESGVSY 47 (517)
Q Consensus 9 ~~~~~~~~~~~~~li~q~L~~~g~~-~s~~~l~~Esg~~~ 47 (517)
+++..-.+++|+.--.+-+.+.||. -|...+-+++|++-
T Consensus 2 ~R~~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~ 41 (195)
T 2dg7_A 2 ARWDPGAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTR 41 (195)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCH
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCccccCHHHHHHHhCCCH
Confidence 3445678999999999999999998 57899999999953
No 460
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=20.01 E-value=69 Score=25.73 Aligned_cols=48 Identities=6% Similarity=0.095 Sum_probs=37.4
Q ss_pred CchHHHHHHHHHHHhhcChHH-HHHHHhhhcCeeecC-----hhHHHHHHHHHc
Q 042434 14 IKKYEFVRVVVQCLYSLGYQK-SASCLESESGVSYKS-----KGFERLEVQILN 61 (517)
Q Consensus 14 ~~~~~~~~li~q~L~~~g~~~-s~~~l~~Esg~~~~~-----~~~~~~~~~i~~ 61 (517)
-.+++|+.--.+-+.+.||.. |...+-+++|++--+ ++.+.|..++..
T Consensus 8 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 61 (199)
T 2o7t_A 8 KRREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRNFPDRFTLDMACAQ 61 (199)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 357889999999999999999 999999999996422 445556555543
Done!