Citrus Sinensis ID: 042435

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
Protein Sequence
MIVLLAFLSISAACSGVVEEEPSSPSFLKSDMSFNNLDGEIPTYLRDNPPKSFVGNKGLCGHVQGFLSCFQRHRLAPSFILSVKIFLPLTPILAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYDGKILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPEMRNQEMF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEcccccccHHHHHHHHHccccccEEEEccccEEEEEEcccccEEEEEccccccccccEEEEEcccEEEEEEcccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEccccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccHHHHcccccEEEEcccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEcHHHHHHHHcccccccEEccccccEEEEEEcccccEEEEEEEccccEEEEEEEccccccEEEEEEccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEcccHHHHEEccccccEEEccccHHHHccccccEEEEEEcccccccHHHHHccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHccHHcccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHcccccccccccccc
Coil and Loop (DISEMBL)
MIVLLAFLSISAACsgvveeepsspsflksdmsfnnldgeiptylrdnppksfvgnkglcghvqgflscfqrhrlapsfilsvkiflpltpilAFTIFGFILLLKGKSENLKLVTRAAKngdvfsvwnydgkiLYENLIDATEYFHIRYCigtggydsvykaelpdgkVVALKKLhhsetedsafvvyspQCMFFIYEYMERgslfcvlrdddEAIELNWTRRMNIVKSVAHALSYlhhdctpsivhrdissnnillnsNLEAFVADfgtvrlldvdssnrtlqagtYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSlssssgpkiMLIDILYqrlsppinqkiIQDIILVSTIALAClrskpksrptmQRISQelegktpmkkglkeisipemrnqemf
Flexible Loop (DISEMBL)
MIVLLAFLSISAACSGVVEEEPSSPSFLKSDMSFNNLDGEIPTYLRDNPPKSFVGNKGLCGHVQGFLSCFQRHRLAPSFILSVKIFLPLTPILAFTIFGFILLLKGKSENLKLVTRaakngdvfsvwnYDGKILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHhsetedsafvvySPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLdvdssnrtlqagTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLrskpksrptmqrisqelegktpmkkglkeisipemrnqemf
Low Complexity Region (SEG)
MIVLLAFLSISAACSGvveeepsspsFLKSDMSFNNLDGEIPTYLRDNPPKSFVGNKGLCGHVQGFLSCFQRHRLAPSFILSVKIFLPLTPILAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYDGKILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDissnnillnsnlEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGElllslssssGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPEMRNQEMF
Disordered region (IsUnstruct)
*IVLLAFLSISAACSGVV**********************IPTYLRD**PKSFVGNKGLCGHVQGFLSCFQRHRLAPSFILSVKIFLPLTPILAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYDGKILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACL*****************************************
Disordered Region (DISOPRED)
MIVLLAFLSISAACSGVVEEEPSSPSFLKSDMSFNNLDGEIPTYLRDNPPKSFVGNKGLCG**********************KIFLPLTPILAFTIFGFILLLKG******************SVWNYDGKILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE******************M******
Disordered Region (DISEMBL)
MIVLLAFLSISAACS***********FLKSDMSFNNLDGEIPTYLRDNPPKSFVGNKGLCGHVQGFLSCFQRHRLAPSFILSVKIFLPLTPILAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYDGKILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRS**********ISQELEGKTPMKKGLKEISIPEMRNQEMF
Disordered Region (DISPRO)
MIVLLAFLSISAACSGVVEEEPSSPSFLKSDMSFNNLDGEIPTYLRDNPPKSFVGNKGLCGHVQ************PSFILSVKIFLPLTPILAFTIFGFILLLKGKS***************FSVWNYDGKILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPT*QRI****************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIVLLAFLSISAACSGVVEEEPSSPSFLKSDMSFNNLDGEIPTYLRDNPPKSFVGNKGLCGHVQGFLSCFQRHRLAPSFILSVKIFLPLTPILAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYDGKILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPEMRNQEMF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	412	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	yes	no	0.851	0.335	0.418	5e-77
Q9LP24	1120	Probable leucine-rich rep	no	no	0.849	0.312	0.391	2e-66
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.851	0.318	0.333	2e-47
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.866	0.323	0.330	1e-45
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.907	0.298	0.298	3e-44
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.881	0.290	0.296	8e-43
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.927	0.377	0.319	1e-42
O49318	1124	Probable leucine-rich rep	no	no	0.601	0.220	0.365	1e-42
C0LGF4	591	LRR receptor-like serine/	no	no	0.864	0.602	0.323	4e-41
P47735	999	Receptor-like protein kin	no	no	0.859	0.354	0.332	2e-40

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  288 bits (737), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 165/394 (41%), Positives = 233/394 (59%), Gaps = 43/394 (10%)

Query: 31   DMSFNNLDGEIP--TYLRDNPPKSFVGNKGLCGHV---QGFLSCFQRHRLAPSFILSVKI 85
            D+S NNL G IP     R+ PP +F GNK LCG V   QG   C            ++ I
Sbjct: 652  DVSHNNLQGPIPDNAAFRNAPPDAFEGNKDLCGSVNTTQGLKPCSITSSKKSHKDRNLII 711

Query: 86   FLPLTPILAFTIF-----GFILLLKGKSENLKLVTRAAKNGDVFSVWNYDGKILYENLID 140
            ++ L PI+   I      G  +  + +++ ++  T +   G+  S++++DGK+ Y+ +I 
Sbjct: 712  YI-LVPIIGAIIILSVCAGIFICFRKRTKQIEEHTDSESGGETLSIFSFDGKVRYQEIIK 770

Query: 141  ATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFVVYSPQ--------- 191
            AT  F  +Y IGTGG+  VYKA+LP+  ++A+KKL+  ET DS+    S +         
Sbjct: 771  ATGEFDPKYLIGTGGHGKVYKAKLPNA-IMAVKKLN--ETTDSSISNPSTKQEFLNEIRA 827

Query: 192  ---------------C-----MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
                           C      F +YEYMERGSL  VL +DDEA +L+W +R+N+VK VA
Sbjct: 828  LTEIRHRNVVKLFGFCSHRRNTFLVYEYMERGSLRKVLENDDEAKKLDWGKRINVVKGVA 887

Query: 232  HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI 291
            HALSY+HHD +P+IVHRDISS NILL  + EA ++DFGT +LL  DSSN +  AGTYGY+
Sbjct: 888  HALSYMHHDRSPAIVHRDISSGNILLGEDYEAKISDFGTAKLLKPDSSNWSAVAGTYGYV 947

Query: 292  ALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP 351
            A EL Y M VTEKC +YSFGV+ LEV+ G HPG+L+ +LSSS     + +  +     P 
Sbjct: 948  APELAYAMKVTEKCDVYSFGVLTLEVIKGEHPGDLVSTLSSSPPDATLSLKSISDHRLPE 1007

Query: 352  INQKIIQDIILVSTIALACLRSKPKSRPTMQRIS 385
               +I ++++ +  +AL CL S P++RPTM  IS
Sbjct: 1008 PTPEIKEEVLEILKVALLCLHSDPQARPTMLSIS 1041

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  253 bits (645), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 153/391 (39%), Positives = 224/391 (57%), Gaps = 41/391 (10%)

Query: 31   DMSFNNLDGEIPTY--LRDNPPKSFVGNKGLCGHV--QGFLSCFQRHRLAPSFILSVKIF 86
            D+S N L+G +P     R     +   N GLC ++  Q    C +  +   +  L V I 
Sbjct: 731  DISNNKLEGPLPDTPTFRKATADALEENIGLCSNIPKQRLKPCRELKKPKKNGNLVVWIL 790

Query: 87   LPLTPILAF-----TIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYDGKILYENLIDA 141
            +P+  +L         F + +  K K +N +      + G+  S+++ DGK  Y+++I++
Sbjct: 791  VPILGVLVILSICANTFTYCIR-KRKLQNGR--NTDPETGENMSIFSVDGKFKYQDIIES 847

Query: 142  TEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFVVYSPQCM-------- 193
            T  F   + IGTGGY  VY+A L D  ++A+K+LH +  E+ +  V   + +        
Sbjct: 848  TNEFDPTHLIGTGGYSKVYRANLQD-TIIAVKRLHDTIDEEISKPVVKQEFLNEVKALTE 906

Query: 194  -------------------FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHAL 234
                               F IYEYME+GSL  +L +D+EA  L WT+R+N+VK VAHAL
Sbjct: 907  IRHRNVVKLFGFCSHRRHTFLIYEYMEKGSLNKLLANDEEAKRLTWTKRINVVKGVAHAL 966

Query: 235  SYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE 294
            SY+HHD    IVHRDISS NILL+++  A ++DFGT +LL  DSSN +  AGTYGY+A E
Sbjct: 967  SYMHHDRITPIVHRDISSGNILLDNDYTAKISDFGTAKLLKTDSSNWSAVAGTYGYVAPE 1026

Query: 295  LVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ 354
              YTM VTEKC +YSFGV+ LE+++G HPG+L+ SLSSS G  + L  I  +R+  P  Q
Sbjct: 1027 FAYTMKVTEKCDVYSFGVLILELIIGKHPGDLVSSLSSSPGEALSLRSISDERVLEPRGQ 1086

Query: 355  KIIQDIILVSTIALACLRSKPKSRPTMQRIS 385
               + ++ +  +AL CL++ P+SRPTM  IS
Sbjct: 1087 N-REKLLKMVEMALLCLQANPESRPTMLSIS 1116

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/408 (33%), Positives = 196/408 (48%), Gaps = 57/408 (13%)

Query: 26   SFLKSDMSFNNLDGEIP--TYLRDNPPKSFVGNKGLCG----HVQ-----------GFLS 68
            S L  ++S NNL G +P     +     +F GN GLC     H Q             ++
Sbjct: 669  SLLICNISNNNLVGTVPDTAVFQRMDSSNFAGNHGLCNSQRSHCQPLVPHSDSKLNWLIN 728

Query: 69   CFQRHRLAPSFILSVKIFLPLTPILAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWN 128
              QR +     IL++   + +  +   T  G    +K +      +    K  DV   + 
Sbjct: 729  GSQRQK-----ILTITCIV-IGSVFLITFLGLCWTIKRREPAFVALEDQTK-PDVMDSYY 781

Query: 129  YDGK-ILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLH---HSETEDSA 184
            +  K   Y+ L+DAT  F     +G G   +VYKAE+  G+V+A+KKL+      + D++
Sbjct: 782  FPKKGFTYQGLVDATRNFSEDVVLGRGACGTVYKAEMSGGEVIAVKKLNSRGEGASSDNS 841

Query: 185  F--------------------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRM 224
            F                      Y       +YEYM +GSL   L+  ++   L+W  R 
Sbjct: 842  FRAEISTLGKIRHRNIVKLYGFCYHQNSNLLLYEYMSKGSLGEQLQRGEKNCLLDWNARY 901

Query: 225  NIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD-SSNRTL 283
             I    A  L YLHHDC P IVHRDI SNNILL+   +A V DFG  +L+D+  S + + 
Sbjct: 902  RIALGAAEGLCYLHHDCRPQIVHRDIKSNNILLDERFQAHVGDFGLAKLIDLSYSKSMSA 961

Query: 284  QAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP-------GELLLSLSSSSGP 336
             AG+YGYIA E  YTM VTEKC IYSFGVV LE++ G  P       G+L+  +  S   
Sbjct: 962  VAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELITGKPPVQPLEQGGDLVNWVRRSIRN 1021

Query: 337  KIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
             I  I++   RL    +++ + ++ LV  IAL C  + P SRPTM+ +
Sbjct: 1022 MIPTIEMFDARLDTN-DKRTVHEMSLVLKIALFCTSNSPASRPTMREV 1068

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 138/418 (33%), Positives = 207/418 (49%), Gaps = 61/418 (14%)

Query: 20   EEPSS----PSFLKSDMSFNNLDGEIPTYLRDNPPKSFVGNKGLCGHVQGFLSCFQRHRL 75
            E PSS     S L  + S+N+L G IP  LR+    SF+GN+GLCG       C Q    
Sbjct: 665  EIPSSFANLSSLLGYNFSYNSLTGPIP-LLRNISMSSFIGNEGLCGPP--LNQCIQTQPF 721

Query: 76   APSFILSVKIFLPLTPILAFT---IFGFILLLKG-----KSENLKLVTRAAKNG------ 121
            APS        +  + I+A T   I G  L+L           ++ V  +A++G      
Sbjct: 722  APSQSTGKPGGMRSSKIIAITAAVIGGVSLMLIALIVYLMRRPVRTVASSAQDGQPSEMS 781

Query: 122  -DVFSVWNYDGKILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL---HH 177
             D++  +       +++L+ AT+ F   + +G G   +VYKA LP G  +A+KKL   H 
Sbjct: 782  LDIY--FPPKEGFTFQDLVAATDNFDESFVVGRGACGTVYKAVLPAGYTLAVKKLASNHE 839

Query: 178  SETEDSAFVVYSPQCM-----------------------FFIYEYMERGSLFCVLRDDDE 214
                ++    +  + +                         +YEYM +GSL  +L D   
Sbjct: 840  GGNNNNVDNSFRAEILTLGNIRHRNIVKLHGFCNHQGSNLLLYEYMPKGSLGEILHD--P 897

Query: 215  AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL 274
            +  L+W++R  I    A  L+YLHHDC P I HRDI SNNILL+   EA V DFG  +++
Sbjct: 898  SCNLDWSKRFKIALGAAQGLAYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 957

Query: 275  DV-DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP-------GEL 326
            D+  S + +  AG+YGYIA E  YTM VTEK  IYS+GVV LE+L G  P       G++
Sbjct: 958  DMPHSKSMSAIAGSYGYIAPEYAYTMKVTEKSDIYSYGVVLLELLTGKAPVQPIDQGGDV 1017

Query: 327  LLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
            +  + S      +   +L  RL+   +++I+  ++ V  IAL C    P +RP+M+++
Sbjct: 1018 VNWVRSYIRRDALSSGVLDARLTLE-DERIVSHMLTVLKIALLCTSVSPVARPSMRQV 1074

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  179 bits (454), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 132/442 (29%), Positives = 208/442 (47%), Gaps = 68/442 (15%)

Query: 9    SISAACSGVVEEEPSSPSFLKS----DMSFNNLDGEIPTYLRDNPPKSFVGNKGLCG--- 61
            S+  + + +V E P     +KS    ++S+NNL+G++          +FVGN GLCG   
Sbjct: 797  SLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKKQFSRWQADAFVGNAGLCGSPL 856

Query: 62   -HVQGFLSCFQRHRLAPSFILSVKIFLPLTPILAFTIFGFILLLKGKSENLKLVTRAAK- 119
             H     S  QR  L+P  ++ +     L  I A  +   IL  K   +  K V      
Sbjct: 857  SHCNRAGSKNQRS-LSPKTVVIISAISSLAAI-ALMVLVIILFFKQNHDLFKKVRGGNSA 914

Query: 120  --------NGDVFSVWNYDGKILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVA 171
                       +FS       I ++++++AT Y +  + IG+GG   VYKAEL +G+ +A
Sbjct: 915  FSSNSSSSQAPLFSNGGAKSDIKWDDIMEATHYLNEEFMIGSGGSGKVYKAELKNGETIA 974

Query: 172  LKKL-----------HHSETEDSAFVVY-------------SPQCMFFIYEYMERGSLFC 207
            +KK+            + E +    + +             +      IYEYM  GS++ 
Sbjct: 975  VKKILWKDDLMSNKSFNREVKTLGTIRHRHLVKLMGYCSSKADGLNLLIYEYMANGSVWD 1034

Query: 208  VLRDDDEAIE---LNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF 264
             L  ++   +   L W  R+ I   +A  + YLH+DC P IVHRDI S+N+LL+SN+EA 
Sbjct: 1035 WLHANENTKKKEVLGWETRLKIALGLAQGVEYLHYDCVPPIVHRDIKSSNVLLDSNIEAH 1094

Query: 265  VADFGTVRLL----DVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMG 320
            + DFG  ++L    D ++ + T+ AG+YGYIA E  Y++  TEK  +YS G+V +E++ G
Sbjct: 1095 LGDFGLAKILTGNYDTNTESNTMFAGSYGYIAPEYAYSLKATEKSDVYSMGIVLMEIVTG 1154

Query: 321  THPGELL--------------LSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTI 366
              P E +              L     S  +  LID   + L P   +   Q    V  I
Sbjct: 1155 KMPTEAMFDEETDMVRWVETVLDTPPGSEAREKLIDSELKSLLPCEEEAAYQ----VLEI 1210

Query: 367  ALACLRSKPKSRPTMQRISQEL 388
            AL C +S P+ RP+ ++ S+ L
Sbjct: 1211 ALQCTKSYPQERPSSRQASEYL 1232

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  174 bits (442), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 129/435 (29%), Positives = 200/435 (45%), Gaps = 72/435 (16%)

Query: 20   EEPSSPSFLKS----DMSFNNLDGEIPTYLRDNPPKSFVGNKGLCGHVQGFLSCFQRHRL 75
            E P S   +KS    ++SFNNL G++       P  SF+GN GLCG       C +    
Sbjct: 807  EVPGSVGDMKSLGYLNVSFNNLGGKLKKQFSRWPADSFLGNTGLCGSP--LSRCNRVRSN 864

Query: 76   APSFILSVKIFLPLTPILAFTIFGFILLL-----KGKSENLKLVTRA------------A 118
                 LS +  + ++ I A T  G ++L+     K + +  K V               A
Sbjct: 865  NKQQGLSARSVVIISAISALTAIGLMILVIALFFKQRHDFFKKVGHGSTAYTSSSSSSQA 924

Query: 119  KNGDVFSVWNYDGKILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--- 175
             +  +F        I +E++++AT      + IG+GG   VYKAEL +G+ VA+KK+   
Sbjct: 925  THKPLFRNGASKSDIRWEDIMEATHNLSEEFMIGSGGSGKVYKAELENGETVAVKKILWK 984

Query: 176  --------------------HHSETEDSAFVVYSPQCM-FFIYEYMERGSLFCVLRDDDE 214
                                H    +   +     + +   IYEYM+ GS++  L +D  
Sbjct: 985  DDLMSNKSFSREVKTLGRIRHRHLVKLMGYCSSKSEGLNLLIYEYMKNGSIWDWLHEDKP 1044

Query: 215  AIE-----LNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG 269
             +E     L+W  R+ I   +A  + YLHHDC P IVHRDI S+N+LL+SN+EA + DFG
Sbjct: 1045 VLEKKKKLLDWEARLRIAVGLAQGVEYLHHDCVPPIVHRDIKSSNVLLDSNMEAHLGDFG 1104

Query: 270  TVRLL----DVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGE 325
              ++L    D ++ + T  A +YGYIA E  Y++  TEK  +YS G+V +E++ G  P +
Sbjct: 1105 LAKVLTENCDTNTDSNTWFACSYGYIAPEYAYSLKATEKSDVYSMGIVLMEIVTGKMPTD 1164

Query: 326  LLLS------------LSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRS 373
             +              L  +   +  LID   + L P       Q    V  IAL C ++
Sbjct: 1165 SVFGAEMDMVRWVETHLEVAGSARDKLIDPKLKPLLPFEEDAACQ----VLEIALQCTKT 1220

Query: 374  KPKSRPTMQRISQEL 388
             P+ RP+ ++    L
Sbjct: 1221 SPQERPSSRQACDSL 1235

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score =  174 bits (441), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 142/445 (31%), Positives = 211/445 (47%), Gaps = 63/445 (14%)

Query: 5   LAFLSISA-ACSGVVEEE-PSSPSFLKSDMSFNNLDGEIPT--YLRDNPPKSFVGNKGLC 60
           LA L +S  + +GV+ E   +SP+    ++S+N L G +P   +L+   P    GN GLC
Sbjct: 550 LAVLDLSNNSLTGVLPESIGTSPALELLNVSYNKLTGPVPINGFLKTINPDDLRGNSGLC 609

Query: 61  GHVQGFLSCFQRHRLAPSFILSVKI----FLPLTPILAFTIFGFI--LLLKGKSENLKLV 114
           G V    S FQR   + S +   +I     + +  +LA  I   +   L K    N    
Sbjct: 610 GGVLPPCSKFQRATSSHSSLHGKRIVAGWLIGIASVLALGILTIVTRTLYKKWYSNGFCG 669

Query: 115 TRAAKNGDVFSVWNYDGKILYENLIDATEYFHI---RYCIGTGGYDSVYKAELP-DGKVV 170
              A  G+    W +     +     A++          IG G    VYKAE+     V+
Sbjct: 670 DETASKGE----WPWRLMAFHRLGFTASDILACIKESNMIGMGATGIVYKAEMSRSSTVL 725

Query: 171 ALKKLHHS--ETEDSA---FV--------------------VYSPQCMFFIYEYMERGSL 205
           A+KKL  S  + ED     FV                    +Y+ + M  +YE+M  G+L
Sbjct: 726 AVKKLWRSAADIEDGTTGDFVGEVNLLGKLRHRNIVRLLGFLYNDKNMMIVYEFMLNGNL 785

Query: 206 FCVLRDDDEAIEL--NWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEA 263
              +   + A  L  +W  R NI   VAH L+YLHHDC P ++HRDI SNNILL++NL+A
Sbjct: 786 GDAIHGKNAAGRLLVDWVSRYNIALGVAHGLAYLHHDCHPPVIHRDIKSNNILLDANLDA 845

Query: 264 FVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
            +ADFG  R++       ++ AG+YGYIA E  YT+ V EK  IYS+GVV LE+L G  P
Sbjct: 846 RIADFGLARMMARKKETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGRRP 905

Query: 324 GELLLSLSSSSGPKIMLIDILYQRLSPPI-----------NQKIIQ-DIILVSTIALACL 371
                 L    G  + +++ + +++   I           N + +Q +++LV  IAL C 
Sbjct: 906 ------LEPEFGESVDIVEWVRRKIRDNISLEEALDPNVGNCRYVQEEMLLVLQIALLCT 959

Query: 372 RSKPKSRPTMQRISQELEGKTPMKK 396
              PK RP+M+ +   L    P +K
Sbjct: 960 TKLPKDRPSMRDVISMLGEAKPRRK 984

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/287 (36%), Positives = 150/287 (52%), Gaps = 39/287 (13%)

Query: 136  ENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-------------------- 175
            +++++AT+ FH  Y +G G   +VYKA +P GK +A+KKL                    
Sbjct: 810  KDILEATKGFHDSYIVGRGACGTVYKAVMPSGKTIAVKKLESNREGNNNNSNNTDNSFRA 869

Query: 176  ---------HHSETEDSAFVVY-SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMN 225
                     H +     +F  +        +YEYM RGSL  +L    ++  ++W  R  
Sbjct: 870  EILTLGKIRHRNIVRLYSFCYHQGSNSNLLLYEYMSRGSLGELLHGG-KSHSMDWPTRFA 928

Query: 226  IVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD-SSNRTLQ 284
            I    A  L+YLHHDC P I+HRDI SNNIL++ N EA V DFG  +++D+  S + +  
Sbjct: 929  IALGAAEGLAYLHHDCKPRIIHRDIKSNNILIDENFEAHVGDFGLAKVIDMPLSKSVSAV 988

Query: 285  AGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP-------GELLLSLSSSSGPK 337
            AG+YGYIA E  YTM VTEKC IYSFGVV LE+L G  P       G+L     +     
Sbjct: 989  AGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELLTGKAPVQPLEQGGDLATWTRNHIRDH 1048

Query: 338  IMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
             +  +IL   L+   +  I+  +I V+ IA+ C +S P  RPTM+ +
Sbjct: 1049 SLTSEILDPYLTKVEDDVILNHMITVTKIAVLCTKSSPSDRPTMREV 1095

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF4|FEI1_ARATH LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1

 Score =  169 bits (428), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 130/402 (32%), Positives = 201/402 (50%), Gaps = 46/402 (11%)

Query: 31  DMSFNNLDGEIPT--YLRDNPPKSFVGNKGLCG-HVQGFL------------SCFQRHRL 75
           ++S N L G+IP+   L      SF+GN  LCG HV                S   + + 
Sbjct: 176 NVSNNFLVGQIPSDGVLSGFSKNSFIGNLNLCGKHVDVVCQDDSGNPSSHSQSGQNQKKN 235

Query: 76  APSFILSVKIFLPLTPILAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYDGKILY 135
           +   ++S    +    ++A   F    L K K   +++ + A   G   S+  + G + Y
Sbjct: 236 SGKLLISASATVGALLLVALMCFWGCFLYK-KLGKVEIKSLAKDVGGGASIVMFHGDLPY 294

Query: 136 --ENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKK-LHHSETEDSAF------- 185
             +++I   E  +  + IG GG+ +VYK  + DGKV ALK+ L  +E  D  F       
Sbjct: 295 SSKDIIKKLEMLNEEHIIGCGGFGTVYKLAMDDGKVFALKRILKLNEGFDRFFERELEIL 354

Query: 186 -------------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH 232
                           SP     +Y+Y+  GSL   L +  E  +L+W  R+NI+   A 
Sbjct: 355 GSIKHRYLVNLRGYCNSPTSKLLLYDYLPGGSLDEALHERGE--QLDWDSRVNIIIGAAK 412

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-RTLQAGTYGYI 291
            LSYLHHDC+P I+HRDI S+NILL+ NLEA V+DFG  +LL+ + S+  T+ AGT+GY+
Sbjct: 413 GLSYLHHDCSPRIIHRDIKSSNILLDGNLEARVSDFGLAKLLEDEESHITTIVAGTFGYL 472

Query: 292 ALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLL---SLSSSSGPKIMLIDILYQRL 348
           A E + +   TEK  +YSFGV+ LEVL G  P +       L+     K ++ +   + +
Sbjct: 473 APEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNVVGWLKFLISEKRPRDI 532

Query: 349 SPPINQKI-IQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
             P  + + ++ +  + +IA  C+   P+ RPTM R+ Q LE
Sbjct: 533 VDPNCEGMQMESLDALLSIATQCVSPSPEERPTMHRVVQLLE 574

Involved in the signaling pathway that regulates cell wall function, including cellulose biosynthesis, likely via an 1-aminocyclopropane-1-carboxylic acid (ACC)-mediated signal (a precursor of ethylene).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P47735|RLK5_ARATH Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/406 (33%), Positives = 189/406 (46%), Gaps = 52/406 (12%)

Query: 31  DMSFNNLDGEIPT-YLRDNPPKSFVGNKGLCGHVQGFLSCFQRHRLAPSFILSVKIFLPL 89
           ++S+N+L G+IP  Y        F+GN GLC  + G      R +      + + IFL  
Sbjct: 576 NLSYNHLSGKIPPLYANKIYAHDFIGNPGLCVDLDGLCRKITRSKNIGYVWILLTIFLLA 635

Query: 90  TPILAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYDGKILYENLIDATEYFHIRY 149
             +    I  FI   + K   LK  T AA      S W    K+ +    +  +    + 
Sbjct: 636 GLVFVVGIVMFIAKCR-KLRALKSSTLAA------SKWRSFHKLHFSEH-EIADCLDEKN 687

Query: 150 CIGTGGYDSVYKAELPDGKVVALKKLHHS--------------------ETEDSAFVVY- 188
            IG G    VYK EL  G+VVA+KKL+ S                    E E    + + 
Sbjct: 688 VIGFGSSGKVYKVELRGGEVVAVKKLNKSVKGGDDEYSSDSLNRDVFAAEVETLGTIRHK 747

Query: 189 ----------SPQCMFFIYEYMERGSLFCVLRDDDEA-IELNWTRRMNIVKSVAHALSYL 237
                     S  C   +YEYM  GSL  VL  D +  + L W  R+ I    A  LSYL
Sbjct: 748 SIVRLWCCCSSGDCKLLVYEYMPNGSLADVLHGDRKGGVVLGWPERLRIALDAAEGLSYL 807

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ-----AGTYGYIA 292
           HHDC P IVHRD+ S+NILL+S+  A VADFG  ++  + S ++T +     AG+ GYIA
Sbjct: 808 HHDCVPPIVHRDVKSSNILLDSDYGAKVADFGIAKVGQM-SGSKTPEAMSGIAGSCGYIA 866

Query: 293 LELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDI--LYQRLSP 350
            E VYT+ V EK  IYSFGVV LE++ G  P +  L     +      +D   L   + P
Sbjct: 867 PEYVYTLRVNEKSDIYSFGVVLLELVTGKQPTDSELGDKDMAKWVCTALDKCGLEPVIDP 926

Query: 351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRIS---QELEGKTP 393
            ++ K  ++I  V  I L C    P +RP+M+++    QE+ G  P
Sbjct: 927 KLDLKFKEEISKVIHIGLLCTSPLPLNRPSMRKVVIMLQEVSGAVP 972

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates that controls floral organ abscission. May interact with the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) ligands family.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
296085303	789	unnamed protein product [Vitis vinifera]	0.912	0.476	0.509	1e-109
359484066	843	PREDICTED: probable LRR receptor-like se	0.912	0.446	0.509	1e-109
359484063	1003	PREDICTED: probable LRR receptor-like se	0.932	0.382	0.496	1e-109
296085307	874	unnamed protein product [Vitis vinifera]	0.907	0.427	0.507	1e-108
359484068	868	PREDICTED: probable leucine-rich repeat	0.907	0.430	0.507	1e-108
359488983	758	PREDICTED: probable LRR receptor-like se	0.910	0.494	0.477	1e-107
359488981	757	PREDICTED: probable LRR receptor-like se	0.910	0.495	0.473	1e-107
225452698	727	PREDICTED: probable LRR receptor-like se	0.878	0.497	0.501	1e-105
225465647	820	PREDICTED: probable LRR receptor-like se	0.856	0.430	0.495	1e-105
225452751	878	PREDICTED: probable leucine-rich repeat	0.941	0.441	0.467	1e-104

>gi|296085303|emb|CBI29035.3| unnamed protein product [Vitis vinifera]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/406 (50%), Positives = 269/406 (66%), Gaps = 30/406 (7%)

Query: 31  DMSFNNLDGEIPTYLRDN-PPKSFVGNKGLCGHVQGFLSCFQRHRLAPSFILSVKIFLPL 89
           D+S N+L+G IP  L+      SF  NKGLCG ++G   C + ++     ++S    L  
Sbjct: 389 DLSHNDLEGHIPFELQSKFSQGSFDNNKGLCGDIKGLPHCKEEYKTTRIIVIS----LST 444

Query: 90  TPILAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYDGKILYENLIDATEYFHIRY 149
           T  L F + GF LLL  K+  ++      KNGD+FSVWNYDGKI YE++I ATE F I+Y
Sbjct: 445 TLFLFFVVLGF-LLLSRKTRKIQTKEIPTKNGDIFSVWNYDGKIAYEDIIKATEDFDIKY 503

Query: 150 CIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV----------------------- 186
           CIGTGGY SVYKA+LP G VVALKKLH  E +++ ++                       
Sbjct: 504 CIGTGGYGSVYKAQLPTGNVVALKKLHGWERDEAIYLKSFQNEVQILSKIRHRNIVKLQG 563

Query: 187 -VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
                +CMF IY YM RGSL+CVL ++ EA+EL+W +R+N+VKS+ HA+ Y+HHDCTP I
Sbjct: 564 YCLHKRCMFLIYNYMGRGSLYCVLSNEVEALELDWIKRVNVVKSIVHAVCYMHHDCTPPI 623

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKC 305
           +HRDISSNNILL+S L+AF++DFGT RLL  DSSN+TL AGTYGYIA EL YTMVVTEKC
Sbjct: 624 IHRDISSNNILLDSKLDAFLSDFGTARLLHPDSSNQTLLAGTYGYIAPELAYTMVVTEKC 683

Query: 306 VIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVST 365
            +YSFGVVALE +MG HPGEL   LSSSS   IML +IL  RL  P +Q++ +D++LV  
Sbjct: 684 DVYSFGVVALETMMGKHPGELFTLLSSSSTQNIMLTNILDSRLPSPQDQQVARDVVLVVW 743

Query: 366 IALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPEMRNQEM 411
           +AL C+ S P+SRPTMQ I  +L  ++P       IS+ ++   E+
Sbjct: 744 LALKCIHSNPRSRPTMQHILSKLLTQSPFLGPFNWISLCQLTALEI 789

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484066|ref|XP_002271307.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/406 (50%), Positives = 270/406 (66%), Gaps = 30/406 (7%)

Query: 31  DMSFNNLDGEIPTYLRDNPPK-SFVGNKGLCGHVQGFLSCFQRHRLAPSFILSVKIFLPL 89
           D+S N+L+G IP  L+    + SF  NKGLCG ++G   C + ++     ++S    L  
Sbjct: 443 DLSHNDLEGHIPFELQSKFSQGSFDNNKGLCGDIKGLPHCKEEYKTTRIIVIS----LST 498

Query: 90  TPILAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYDGKILYENLIDATEYFHIRY 149
           T  L F + GF LLL  K+  ++      KNGD+FSVWNYDGKI YE++I ATE F I+Y
Sbjct: 499 TLFLFFVVLGF-LLLSRKTRKIQTKEIPTKNGDIFSVWNYDGKIAYEDIIKATEDFDIKY 557

Query: 150 CIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV----------------------- 186
           CIGTGGY SVYKA+LP G VVALKKLH  E +++ ++                       
Sbjct: 558 CIGTGGYGSVYKAQLPTGNVVALKKLHGWERDEAIYLKSFQNEVQILSKIRHRNIVKLQG 617

Query: 187 -VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
                +CMF IY YM RGSL+CVL ++ EA+EL+W +R+N+VKS+ HA+ Y+HHDCTP I
Sbjct: 618 YCLHKRCMFLIYNYMGRGSLYCVLSNEVEALELDWIKRVNVVKSIVHAVCYMHHDCTPPI 677

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKC 305
           +HRDISSNNILL+S L+AF++DFGT RLL  DSSN+TL AGTYGYIA EL YTMVVTEKC
Sbjct: 678 IHRDISSNNILLDSKLDAFLSDFGTARLLHPDSSNQTLLAGTYGYIAPELAYTMVVTEKC 737

Query: 306 VIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVST 365
            +YSFGVVALE +MG HPGEL   LSSSS   IML +IL  RL  P +Q++ +D++LV  
Sbjct: 738 DVYSFGVVALETMMGKHPGELFTLLSSSSTQNIMLTNILDSRLPSPQDQQVARDVVLVVW 797

Query: 366 IALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPEMRNQEM 411
           +AL C+ S P+SRPTMQ I  +L  ++P       IS+ ++   E+
Sbjct: 798 LALKCIHSNPRSRPTMQHILSKLLTQSPFLGPFNWISLCQLTALEI 843

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484063|ref|XP_002270651.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/421 (49%), Positives = 280/421 (66%), Gaps = 37/421 (8%)

Query: 22   PSSPSF--LKSDMSFNNLDGEIPTYLR-DNPPKSFVGNKGLCGHVQGFLSCFQRHR--LA 76
            P+ P +  L  D+S+N+L+G IP  L+ ++ P+ F  NKGLCG ++G+  C + H+  L 
Sbjct: 589  PTLPKYGWLSIDLSYNDLEGHIPIELQLEHSPEVFSYNKGLCGEIKGWPHCKRGHKTMLI 648

Query: 77   PSFILSVKIFLPLTPILAFTIFGFILLLKGKSENLKL--VTRAAKNGDVFSVWNYDGKIL 134
             +  +S  +FL       F +FGF+LL +   +N     + +  KNGD+FS+WNYDGKI 
Sbjct: 649  TTIAISTILFL------LFAVFGFLLLSRKMRQNQTKTPLKKNEKNGDIFSIWNYDGKIA 702

Query: 135  YENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV-------- 186
            YE++I+ATE F I+YCIGTGGY +VYKA+LP G VVALKKLH  E +++ +         
Sbjct: 703  YEDIIEATEDFDIKYCIGTGGYGTVYKAQLPTGNVVALKKLHGWERDEATYFKSFQNEVQ 762

Query: 187  ----------------VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
                                +CMF IY+YMERGSLF VL ++ EA+EL+W +R+N+VKS+
Sbjct: 763  VLSKIQHRNIIKLHGYCLHKRCMFLIYKYMERGSLFGVLSNEVEALELDWIKRVNVVKSI 822

Query: 231  AHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGY 290
             HAL Y+HHD T  I+HRDISS+NILL+S L+AF++DFGT RLL  DSSN+T+ AGTYGY
Sbjct: 823  VHALCYMHHDYTLPIIHRDISSSNILLDSKLDAFLSDFGTARLLHHDSSNQTVLAGTYGY 882

Query: 291  IALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP 350
            IA EL YTMVVTEKC +YSFGVVALE +MG HP EL   LSSSS   IML DIL  RL  
Sbjct: 883  IAPELAYTMVVTEKCDVYSFGVVALETMMGKHPRELFTLLSSSSAQSIMLTDILDSRLPS 942

Query: 351  PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPEMRNQE 410
            P +Q++ +D++LV  +AL C+ S P+SRPTMQ IS  L  + P  +    IS+  +  QE
Sbjct: 943  PQDQQVARDVVLVVWLALKCIHSNPRSRPTMQLISSRLLTQLPFLETFHGISLWLLNTQE 1002

Query: 411  M 411
            +
Sbjct: 1003 I 1003

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085307|emb|CBI29039.3| unnamed protein product [Vitis vinifera]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/406 (50%), Positives = 269/406 (66%), Gaps = 32/406 (7%)

Query: 31  DMSFNNLDGEIPTYLR-DNPPKSFVGNKGLCGHVQGFLSCFQRHRLAPSFILSVKIFLPL 89
           D S N+ +G IP  L+   PP+ F  NKGLCG  +G   C + H+      LS  +FL  
Sbjct: 476 DFSHNDFEGHIPHELQFVYPPRVFGHNKGLCGEREGLPHCKRGHKTILIISLSTILFL-- 533

Query: 90  TPILAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYDGKILYENLIDATEYFHIRY 149
               +F   G ILLL  K+   +    + KNGD+FSVWNYDGKI YE++I+ATE F I+Y
Sbjct: 534 ----SFVALG-ILLLSRKTRRNQTKATSTKNGDIFSVWNYDGKIAYEDIIEATEDFDIKY 588

Query: 150 CIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV----------------------- 186
           CIGTGGY SVYKA+LP G VVALKKLH  E +++ ++                       
Sbjct: 589 CIGTGGYGSVYKAQLPTGNVVALKKLHGWERDEATYLKSFQNEVQVLSKIQHRNIIKLHG 648

Query: 187 -VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
                +CMF IY+YMERGSL+CVL ++ EA+EL+W +R+N++KS+ HAL Y+HHD TP I
Sbjct: 649 YCLHKRCMFLIYKYMERGSLYCVLSNEVEALELDWIKRVNVIKSIVHALCYMHHDSTPPI 708

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKC 305
           +HRD+SSNNILL+  L+AF++DFGT RLL  DSSN+TL AGTYGYIA EL YTM VTEKC
Sbjct: 709 IHRDVSSNNILLDFKLDAFLSDFGTARLLHPDSSNQTLLAGTYGYIAPELAYTMAVTEKC 768

Query: 306 VIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVST 365
            +YSFGVVALE +MG HP EL   LSSSS   IML DIL  RL  P ++++ +D++LV  
Sbjct: 769 DVYSFGVVALETMMGRHPRELFTLLSSSSAQNIMLTDILDSRLPSPQDRQVARDVVLVVW 828

Query: 366 IALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPEMRNQEM 411
           +AL C+ S P+SRPTMQ IS +L  ++P  +    IS+ ++  QE+
Sbjct: 829 LALKCIHSNPRSRPTMQHISSKLLIQSPFLEPFHGISLWQLNIQEI 874

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484068|ref|XP_002271708.2| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/406 (50%), Positives = 269/406 (66%), Gaps = 32/406 (7%)

Query: 31  DMSFNNLDGEIPTYLR-DNPPKSFVGNKGLCGHVQGFLSCFQRHRLAPSFILSVKIFLPL 89
           D S N+ +G IP  L+   PP+ F  NKGLCG  +G   C + H+      LS  +FL  
Sbjct: 470 DFSHNDFEGHIPHELQFVYPPRVFGHNKGLCGEREGLPHCKRGHKTILIISLSTILFL-- 527

Query: 90  TPILAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYDGKILYENLIDATEYFHIRY 149
               +F   G ILLL  K+   +    + KNGD+FSVWNYDGKI YE++I+ATE F I+Y
Sbjct: 528 ----SFVALG-ILLLSRKTRRNQTKATSTKNGDIFSVWNYDGKIAYEDIIEATEDFDIKY 582

Query: 150 CIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV----------------------- 186
           CIGTGGY SVYKA+LP G VVALKKLH  E +++ ++                       
Sbjct: 583 CIGTGGYGSVYKAQLPTGNVVALKKLHGWERDEATYLKSFQNEVQVLSKIQHRNIIKLHG 642

Query: 187 -VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
                +CMF IY+YMERGSL+CVL ++ EA+EL+W +R+N++KS+ HAL Y+HHD TP I
Sbjct: 643 YCLHKRCMFLIYKYMERGSLYCVLSNEVEALELDWIKRVNVIKSIVHALCYMHHDSTPPI 702

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKC 305
           +HRD+SSNNILL+  L+AF++DFGT RLL  DSSN+TL AGTYGYIA EL YTM VTEKC
Sbjct: 703 IHRDVSSNNILLDFKLDAFLSDFGTARLLHPDSSNQTLLAGTYGYIAPELAYTMAVTEKC 762

Query: 306 VIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVST 365
            +YSFGVVALE +MG HP EL   LSSSS   IML DIL  RL  P ++++ +D++LV  
Sbjct: 763 DVYSFGVVALETMMGRHPRELFTLLSSSSAQNIMLTDILDSRLPSPQDRQVARDVVLVVW 822

Query: 366 IALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPEMRNQEM 411
           +AL C+ S P+SRPTMQ IS +L  ++P  +    IS+ ++  QE+
Sbjct: 823 LALKCIHSNPRSRPTMQHISSKLLIQSPFLEPFHGISLWQLNIQEI 868

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488983|ref|XP_002277433.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/423 (47%), Positives = 271/423 (64%), Gaps = 48/423 (11%)

Query: 31  DMSFNNLDGEIPTYLRDN--------------------PPKSFVGNKGLCGHVQGFLSCF 70
           ++S NNL G IP  +  N                    P ++F  NKGLCG ++G   C 
Sbjct: 338 NLSHNNLSGTIPYSISSNYNKWTLIDLSNNRLEGQTRAPVEAFGHNKGLCGEIKGRPRCK 397

Query: 71  QRHRLAPSFILSVKIFLPLTPILAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYD 130
           +RH++     L + + L  T +L+  I GF+   +   +N  L T   KNGD+FS+W+YD
Sbjct: 398 KRHQIT----LIIVVSLSTTLLLSIAILGFLFHKRRIRKNQLLETTKVKNGDLFSIWDYD 453

Query: 131 GKILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV---- 186
           G I Y+++I ATE F I+YCIGTGGY SVY+A+LP GKVVALKKLH  E  D  ++    
Sbjct: 454 GVIAYQDIIQATEDFDIKYCIGTGGYGSVYRAQLPSGKVVALKKLHGWERGDPTYLKSFE 513

Query: 187 --------------------VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNI 226
                                   +CMF +Y+YME+GSL+C+LRD+ EA+EL+W +R+N+
Sbjct: 514 NEVQMLTRIRHRNIVKLHGFCLHKRCMFLVYKYMEKGSLYCMLRDEVEAVELDWIKRVNV 573

Query: 227 VKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAG 286
           VKS+A+ALSY+HHDC   I+HRDISSNNILL+S LEAFV+DFGT RLLD DSSNRTL  G
Sbjct: 574 VKSIANALSYMHHDCDLPIIHRDISSNNILLDSKLEAFVSDFGTARLLDNDSSNRTLLVG 633

Query: 287 TYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ 346
           TYGYIA EL YTMVVTEKC IYSFG+VALE +MG HPGE + SLSSSS     L D+L  
Sbjct: 634 TYGYIAPELAYTMVVTEKCDIYSFGMVALETMMGMHPGEFVTSLSSSSTQNTTLKDVLDS 693

Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPEM 406
           RLS P + ++  +I L+ ++AL CL S P+ RP+MQ +S +L       + +  IS+ ++
Sbjct: 694 RLSSPKSTQVANNIALIVSLALKCLHSNPQFRPSMQEVSSKLVSTRSFPQPISTISLLQL 753

Query: 407 RNQ 409
           +++
Sbjct: 754 KDE 756

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488981|ref|XP_002275364.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/422 (47%), Positives = 272/422 (64%), Gaps = 47/422 (11%)

Query: 31  DMSFNNLDGEIPTYLRDN-------------------PPKSFVGNKGLCGHVQGFLSCFQ 71
           ++S NNL G IP  +  N                   P ++F  NKGLCG ++G+  C +
Sbjct: 338 NLSHNNLSGTIPYSISSNYRWTLIDLSNNRLEGQARAPVEAFGHNKGLCGEIKGWARCKK 397

Query: 72  RHRLAPSFILSVKIFLPLTPILAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYDG 131
           RH++     L + + L  T +L+  I GF+   +   +N  L T   KNGD+FS+W++DG
Sbjct: 398 RHQIT----LIIVVSLSTTLLLSVAILGFLFHKRRIRKNQLLETTKVKNGDLFSIWDFDG 453

Query: 132 KILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV----- 186
            I Y+++I ATE F I+YCIGTGGY SVY+A+LP GKVVALKKLH  E ED  ++     
Sbjct: 454 VIAYQDIIQATEDFDIKYCIGTGGYGSVYRAQLPSGKVVALKKLHGWEREDPTYLKSFEN 513

Query: 187 -------------------VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIV 227
                                  +CMF +Y+YME+GSL+C+LRD+ EA+EL+W +R+N+V
Sbjct: 514 EVQMLTRIRHRNIVKLHGFCLHKRCMFLVYKYMEKGSLYCMLRDEVEAVELDWIKRVNVV 573

Query: 228 KSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGT 287
           KS+A+ALSY+HHDC   I+HRDISSNNILL+S LEAFV+DFGT RLLD DSSNRTL AGT
Sbjct: 574 KSIANALSYMHHDCDLPIIHRDISSNNILLDSKLEAFVSDFGTARLLDNDSSNRTLLAGT 633

Query: 288 YGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQR 347
           YGYIA EL YTMVVTEKC +YSFG+VALE +MG HPGE + SLSSSS     L D+L  R
Sbjct: 634 YGYIAPELAYTMVVTEKCDVYSFGMVALETMMGMHPGEFITSLSSSSTQNTTLKDVLDSR 693

Query: 348 LSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPEMR 407
           LS P + ++  +I L+ ++AL CL   P+  P+MQ +S +L       + +  IS+ +++
Sbjct: 694 LSSPKSTRVANNIALIVSLALKCLHFNPQFCPSMQEVSSKLVSTRSFPQPISAISLLQLK 753

Query: 408 NQ 409
           ++
Sbjct: 754 DE 755

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452698|ref|XP_002276923.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/393 (50%), Positives = 267/393 (67%), Gaps = 31/393 (7%)

Query: 31  DMSFNNLDGEIPTYLR-DNPPKSFVGNKGLCGHVQGFLSCFQRHRLAPSFILSVKIFLPL 89
           D+S+N+L+G IP  L+ ++PP  F  NK LCG ++ +  C +  ++  + IL + +   L
Sbjct: 321 DLSYNDLEGHIPFELQFESPPGVFEHNKHLCGEIRHWPHCKKGQKI--TLILVISLLATL 378

Query: 90  TPILAFTIFGFILLLKGKSENLKLVTRAA--KNGDVFSVWNYDGKILYENLIDATEYFHI 147
              +AF    F+LL +   +   +   AA  + GD+FSVW+YDG I Y+++I +TE F I
Sbjct: 379 C--IAFAFLKFLLLPRKMRKMRHMSASAAETRRGDLFSVWDYDGTIAYQDIIQSTENFDI 436

Query: 148 RYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV--------------------- 186
           +YC+G GGY SVY+A+LP GKVVALKKLH  E E+  ++                     
Sbjct: 437 KYCVGVGGYGSVYRAQLPCGKVVALKKLHGWEREEPTYLKSFENEAQILSKIRHRNIVKL 496

Query: 187 ---VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
                  + MF +Y++MERGSLFC+L  + EA+EL+WT+R+N+VKS+AHALSY+HHDC+P
Sbjct: 497 HGFCLHRRSMFLVYQFMERGSLFCMLSHEVEALELDWTKRLNVVKSIAHALSYMHHDCSP 556

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTE 303
            I+HRDISSNN+LLNS LEAFV+DFGT RLLD DSS +TL  GTYGYIA EL YTM VT+
Sbjct: 557 PIIHRDISSNNVLLNSQLEAFVSDFGTARLLDPDSSIQTLLVGTYGYIAPELAYTMTVTK 616

Query: 304 KCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILV 363
           KC +YSFGVVALE +MG HP E++ SLSSSSG  I+L D+L  RL+ P N ++ +DI+ V
Sbjct: 617 KCDVYSFGVVALETMMGKHPREVITSLSSSSGQDILLRDVLDPRLALPENPQVAKDIVFV 676

Query: 364 STIALACLRSKPKSRPTMQRISQELEGKTPMKK 396
             +AL C+ S P+SRPTMQ+IS +L G  P  K
Sbjct: 677 VLLALKCIHSNPQSRPTMQQISYKLLGDIPFPK 709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465647|ref|XP_002270862.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/406 (49%), Positives = 262/406 (64%), Gaps = 53/406 (13%)

Query: 31  DMSFNNLDGEIPTYLRDN-PPKSFVGNKGLCGHVQGFLSCFQRHRLAPSFILSVKIFLPL 89
           D+S+N+L+G IP  L+      SF  NKGLCG ++G   C + ++   + I++ KI    
Sbjct: 443 DLSYNDLEGHIPFELQSKFSQGSFDNNKGLCGDIKGLPHCKEEYK--TTRIITRKIQTKE 500

Query: 90  TPILAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYDGKILYENLIDATEYFHIRY 149
            P                           KNGD+FSVWNYDGKI YE++I ATE F I+Y
Sbjct: 501 IP--------------------------TKNGDIFSVWNYDGKIAYEDIIKATEDFDIKY 534

Query: 150 CIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV----------------------- 186
           CIGTGGY SVYKA+LP G VVALKKLH  ET+++ ++                       
Sbjct: 535 CIGTGGYGSVYKAQLPTGNVVALKKLHGWETDEATYLKSFQNEVQILSKIRHRNIVKLQG 594

Query: 187 -VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
                +CMF IY YM RGSL+CVL ++ EA+EL+W +R+N+VKS+ HA+ Y+HHDCTP I
Sbjct: 595 YCLHKRCMFLIYNYMGRGSLYCVLSNEVEALELDWIKRVNVVKSIVHAVCYMHHDCTPPI 654

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKC 305
           +HRDISSNNILL+S L+AF++DFGT RLL  DSSN+TL +GTYGYIA EL YTMVVTEKC
Sbjct: 655 IHRDISSNNILLDSKLDAFLSDFGTSRLLHPDSSNQTLLSGTYGYIAPELAYTMVVTEKC 714

Query: 306 VIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVST 365
            +YSFGVVALE +MG HPGEL   LSSSS   IML D+L  RL  P +Q++ +D++LV  
Sbjct: 715 DVYSFGVVALETMMGKHPGELFTLLSSSSTQNIMLTDMLDSRLPSPQDQQVARDVVLVVW 774

Query: 366 IALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPEMRNQEM 411
           +AL C+ S P+SRPTMQ IS +L  ++P       IS+ ++   E+
Sbjct: 775 LALKCIHSNPRSRPTMQHISSKLLTQSPFLGPFHGISLWQLNALEI 820

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452751|ref|XP_002277606.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/421 (46%), Positives = 273/421 (64%), Gaps = 33/421 (7%)

Query: 15  SGVVEEEPSSPSFLKSDMSFNNLDGEIPTYLRDNPPKSFVGNKGLCGHVQGFLSCFQRHR 74
           SG +    S+  +   D+S N L+G+        P ++F  NKGLC  ++G   C +RH+
Sbjct: 467 SGTIPLSISNNMWTLFDLSHNQLEGQ-----STAPLEAFDHNKGLCDGIKGLSHCKKRHQ 521

Query: 75  LAPSFILSVKIFLPLTPILAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYDGKIL 134
           +     +S+   L    +L+  + GF+   +   +N    T   KNGD+FS+W+YDG I 
Sbjct: 522 IILIIAISLSATL----LLSVAVLGFLFRKQKIRKNQLPKTTKVKNGDLFSIWDYDGVIA 577

Query: 135 YENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV-------- 186
           Y+++I ATE F I+YCIGTGGY SVY+A+LP GKVVALKKLH  E +D  ++        
Sbjct: 578 YQDIIQATEDFDIKYCIGTGGYGSVYRAQLPSGKVVALKKLHGWERDDPTYLKSFENEVQ 637

Query: 187 ----------------VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
                               +CMF +Y+YME+GSL+C+LRD+ E ++L+W +R+N+VK +
Sbjct: 638 MLSRIQHRNIVKLHGFCLHNKCMFLVYKYMEKGSLYCMLRDEVEVVQLDWIKRVNVVKGI 697

Query: 231 AHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGY 290
           A+ALSY+HHD T  I+HRDISSNNILL+S LEAFVADFGT RLLD DSSN+TL AGTYGY
Sbjct: 698 ANALSYMHHDSTLPIIHRDISSNNILLDSKLEAFVADFGTARLLDPDSSNQTLLAGTYGY 757

Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP 350
           IA EL YTMVVTEKC +YSFG+VALE +MG HPG+L+ SLS+SS   I L D+L  RLS 
Sbjct: 758 IAPELAYTMVVTEKCDVYSFGMVALETIMGKHPGDLVTSLSASSTQNITLKDVLDSRLSS 817

Query: 351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPEMRNQE 410
           P   ++  D+ LV ++AL CL   P+ RP+MQ++S  L       + +  IS+ +++N+E
Sbjct: 818 PKGPQVANDVALVVSLALKCLHCNPRFRPSMQQVSWRLSASKSFPQPVGAISLLQLKNEE 877

Query: 411 M 411
           +
Sbjct: 878 I 878

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	412
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.463	0.182	0.497	4.2e-67
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.546	0.200	0.436	3.4e-59
TAIR|locus:2005540	999	HAE "HAESA" [Arabidopsis thali	0.495	0.204	0.370	5.8e-39
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.451	0.168	0.375	6.1e-39
TAIR|locus:2139885	1013	AT4G28650 [Arabidopsis thalian	0.558	0.227	0.352	3.1e-37
TAIR|locus:2168907	966	XIP1 "XYLEM INTERMIXED WITH PH	0.541	0.230	0.330	1.3e-36
TAIR|locus:2169965	1003	BAM1 "BARELY ANY MERISTEM 1" [	0.507	0.208	0.360	1.1e-35
TAIR|locus:2025545	1029	AT1G08590 [Arabidopsis thalian	0.584	0.234	0.310	6.8e-34
TAIR|locus:2170668	604	AT5G62710 [Arabidopsis thalian	0.483	0.329	0.342	7.3e-34
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.531	0.192	0.325	7.5e-34

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 4.2e-67, Sum P(3) = 4.2e-67
 Identities = 96/193 (49%), Positives = 125/193 (64%)

Query:   194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXXX 253
             F +YEYMERGSL  VL +DDEA +L+W +R+N+VK VAHALSY+HHD +P+IVHRD    
Sbjct:   850 FLVYEYMERGSLRKVLENDDEAKKLDWGKRINVVKGVAHALSYMHHDRSPAIVHRDISSG 909

Query:   254 XXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVV 313
                     EA ++DFGT +LL  DSSN +  AGTYGY+A EL Y M VTEKC +YSFGV+
Sbjct:   910 NILLGEDYEAKISDFGTAKLLKPDSSNWSAVAGTYGYVAPELAYAMKVTEKCDVYSFGVL 969

Query:   314 ALEVLMGTHPGEXXXXXXXXX-GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLR 372
              LEV+ G HPG+             + L  I   RL  P   +I ++++ +  +AL CL 
Sbjct:   970 TLEVIKGEHPGDLVSTLSSSPPDATLSLKSISDHRLPEP-TPEIKEEVLEILKVALLCLH 1028

Query:   373 SKPKSRPTMQRIS 385
             S P++RPTM  IS
Sbjct:  1029 SDPQARPTMLSIS 1041

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.4e-59, Sum P(3) = 3.4e-59
 Identities = 99/227 (43%), Positives = 134/227 (59%)

Query:   159 VYKAELPDGKVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIEL 218
             V K E  + +V AL ++ H             +  F IYEYME+GSL  +L +D+EA  L
Sbjct:   892 VVKQEFLN-EVKALTEIRHRNVVKLFGFCSHRRHTFLIYEYMEKGSLNKLLANDEEAKRL 950

Query:   219 NWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDS 278
              WT+R+N+VK VAHALSY+HHD    IVHRD             A ++DFGT +LL  DS
Sbjct:   951 TWTKRINVVKGVAHALSYMHHDRITPIVHRDISSGNILLDNDYTAKISDFGTAKLLKTDS 1010

Query:   279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKI 338
             SN +  AGTYGY+A E  YTM VTEKC +YSFGV+ LE+++G HPG+         G  +
Sbjct:  1011 SNWSAVAGTYGYVAPEFAYTMKVTEKCDVYSFGVLILELIIGKHPGDLVSSLSSSPGEAL 1070

Query:   339 MLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRIS 385
              L  I  +R+  P  Q   + ++ +  +AL CL++ P+SRPTM  IS
Sbjct:  1071 SLRSISDERVLEPRGQNR-EKLLKMVEMALLCLQANPESRPTMLSIS 1116

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2005540 HAE "HAESA" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 5.8e-39, Sum P(3) = 5.8e-39
 Identities = 80/216 (37%), Positives = 107/216 (49%)

Query:   189 SPQCMFFIYEYMERGSLFCVLRDDDEA-IELNWTRRMNIVKSVAHALSYLHHDCTPSIVH 247
             S  C   +YEYM  GSL  VL  D +  + L W  R+ I    A  LSYLHHDC P IVH
Sbjct:   758 SGDCKLLVYEYMPNGSLADVLHGDRKGGVVLGWPERLRIALDAAEGLSYLHHDCVPPIVH 817

Query:   248 RDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQA-----GTYGYIALELVYTMVVT 302
             RD             A VADFG  ++  + S ++T +A     G+ GYIA E VYT+ V 
Sbjct:   818 RDVKSSNILLDSDYGAKVADFGIAKVGQM-SGSKTPEAMSGIAGSCGYIAPEYVYTLRVN 876

Query:   303 EKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDI--LYQRLSPPINQKIIQDI 360
             EK  IYSFGVV LE++ G  P +               +D   L   + P ++ K  ++I
Sbjct:   877 EKSDIYSFGVVLLELVTGKQPTDSELGDKDMAKWVCTALDKCGLEPVIDPKLDLKFKEEI 936

Query:   361 ILVSTIALACLRSKPKSRPTMQRIS---QELEGKTP 393
               V  I L C    P +RP+M+++    QE+ G  P
Sbjct:   937 SKVIHIGLLCTSPLPLNRPSMRKVVIMLQEVSGAVP 972

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
 Identities = 74/197 (37%), Positives = 106/197 (53%)

Query:   196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXXXXX 255
             +YEYM +GSL  +L D   +  L+W++R  I    A  L+YLHHDC P I HRD      
Sbjct:   881 LYEYMPKGSLGEILHDP--SCNLDWSKRFKIALGAAQGLAYLHHDCKPRIFHRDIKSNNI 938

Query:   256 XXXXXXEAFVADFGTVRLLDVD-SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVA 314
                   EA V DFG  +++D+  S + +  AG+YGYIA E  YTM VTEK  IYS+GVV 
Sbjct:   939 LLDDKFEAHVGDFGLAKVIDMPHSKSMSAIAGSYGYIAPEYAYTMKVTEKSDIYSYGVVL 998

Query:   315 LEVLMGTHP-------GEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDIILVSTIA 367
             LE+L G  P       G+             +   +L  RL+   +++I+  ++ V  IA
Sbjct:   999 LELLTGKAPVQPIDQGGDVVNWVRSYIRRDALSSGVLDARLTLE-DERIVSHMLTVLKIA 1057

Query:   368 LACLRSKPKSRPTMQRI 384
             L C    P +RP+M+++
Sbjct:  1058 LLCTSVSPVARPSMRQV 1074

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2139885 AT4G28650 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.1e-37, Sum P(3) = 3.1e-37
 Identities = 84/238 (35%), Positives = 120/238 (50%)

Query:   167 GKVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIEL--NWTRRM 224
             G+V  L KL H         +Y+ + M  +YE+M  G+L   +   + A  L  +W  R 
Sbjct:   747 GEVNLLGKLRHRNIVRLLGFLYNDKNMMIVYEFMLNGNLGDAIHGKNAAGRLLVDWVSRY 806

Query:   225 NIVKSVAHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQ 284
             NI   VAH L+YLHHDC P ++HRD            +A +ADFG  R++       ++ 
Sbjct:   807 NIALGVAHGLAYLHHDCHPPVIHRDIKSNNILLDANLDARIADFGLARMMARKKETVSMV 866

Query:   285 AGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP--GEXXXXXXXXXGPKIMLID 342
             AG+YGYIA E  YT+ V EK  IYS+GVV LE+L G  P   E           +  + D
Sbjct:   867 AGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGRRPLEPEFGESVDIVEWVRRKIRD 926

Query:   343 --ILYQRLSPPI-NQKIIQD-IILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKK 396
                L + L P + N + +Q+ ++LV  IAL C    PK RP+M+ +   L    P +K
Sbjct:   927 NISLEEALDPNVGNCRYVQEEMLLVLQIALLCTTKLPKDRPSMRDVISMLGEAKPRRK 984

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2168907 XIP1 "XYLEM INTERMIXED WITH PHLOEM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
 Identities = 77/233 (33%), Positives = 105/233 (45%)

Query:   168 KVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIV 227
             +V  L  + H           S  C   +YEYM  G+L+  L      + L W  R  I 
Sbjct:   709 EVETLGSIRHKNIVKLFSYFSSLDCSLLVYEYMPNGNLWDALHKG--FVHLEWRTRHQIA 766

Query:   228 KSVAHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDV--DSSNRTLQA 285
               VA  L+YLHHD +P I+HRD            +  VADFG  ++L      S  T+ A
Sbjct:   767 VGVAQGLAYLHHDLSPPIIHRDIKSTNILLDVNYQPKVADFGIAKVLQARGKDSTTTVMA 826

Query:   286 GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP-----GEXXXXXXXXXGPKIML 340
             GTYGY+A E  Y+   T KC +YSFGVV +E++ G  P     GE           KI  
Sbjct:   827 GTYGYLAPEYAYSSKATIKCDVYSFGVVLMELITGKKPVDSCFGENKNIVNWVS-TKIDT 885

Query:   341 IDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP 393
              + L + L   +++    D+I    +A+ C    P  RPTM  + Q L   TP
Sbjct:   886 KEGLIETLDKRLSESSKADMINALRVAIRCTSRTPTIRPTMNEVVQLLIDATP 938

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2169965 BAM1 "BARELY ANY MERISTEM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
 Identities = 79/219 (36%), Positives = 105/219 (47%)

Query:   196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXXXXX 255
             +YEYM  GSL  VL        L+W  R  I    A  L YLHHDC+P IVHRD      
Sbjct:   768 VYEYMPNGSLGEVLHGKKGG-HLHWDTRYKIALEAAKGLCYLHHDCSPLIVHRDVKSNNI 826

Query:   256 XXXXXXEAFVADFGTVRLLDVDSSNRTLQA--GTYGYIALELVYTMVVTEKCVIYSFGVV 313
                   EA VADFG  + L    ++  + A  G+YGYIA E  YT+ V EK  +YSFGVV
Sbjct:   827 LLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVV 886

Query:   314 ALEVLMGTHP-GEXXXXXXXXXGPKIMLI---DILYQRLSPPINQKIIQDIILVSTIALA 369
              LE++ G  P GE           + M     D + + L P ++   I ++  V  +A+ 
Sbjct:   887 LLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKDSVLKVLDPRLSSIPIHEVTHVFYVAML 946

Query:   370 CLRSKPKSRPTMQRISQ---ELEGKTPMKKGLKEISIPE 405
             C+  +   RPTM+ + Q   E+    P K      S PE
Sbjct:   947 CVEEQAVERPTMREVVQILTEIPKLPPSKDQPMTESAPE 985

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2025545 AT1G08590 [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 6.8e-34, Sum P(3) = 6.8e-34
 Identities = 78/251 (31%), Positives = 122/251 (48%)

Query:   168 KVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIEL-NWTRRMNI 226
             +V  L  L H         V++ + +  +YEYM  G+L   L   DE   L +W  R N+
Sbjct:   772 EVNLLGGLRHRNIVKILGYVHNEREVMMVYEYMPNGNLGTALHSKDEKFLLRDWLSRYNV 831

Query:   227 VKSVAHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAG 286
                V   L+YLH+DC P I+HRD            EA +ADFG  +++   +   ++ AG
Sbjct:   832 AVGVVQGLNYLHNDCYPPIIHRDIKSNNILLDSNLEARIADFGLAKMMLHKNETVSMVAG 891

Query:   287 TYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP----GEXXXXXXXXXGPKIMLID 342
             +YGYIA E  YT+ + EK  IYS GVV LE++ G  P     E           K+   +
Sbjct:   892 SYGYIAPEYGYTLKIDEKSDIYSLGVVLLELVTGKMPIDPSFEDSIDVVEWIRRKVKKNE 951

Query:   343 ILYQRLSPPIN---QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKGLK 399
              L + +   I    + +I++++L   IAL C    PK RP+++ +   L    P +K + 
Sbjct:   952 SLEEVIDASIAGDCKHVIEEMLLALRIALLCTAKLPKDRPSIRDVITMLAEAKPRRKSVC 1011

Query:   400 EIS--IPEMRN 408
             +++  +P  RN
Sbjct:  1012 QVAGDLPIFRN 1022

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2170668 AT5G62710 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.3e-34, Sum P(3) = 7.3e-34
 Identities = 71/207 (34%), Positives = 105/207 (50%)

Query:   190 PQCMFFIYEYMERGSLFCVL--RDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVH 247
             P     IY+Y+  GSL  +L  R  ++ + LNW  R+ I    A  L+YLHHDC+P IVH
Sbjct:   378 PSSRLLIYDYLTLGSLDDLLHERAQEDGL-LNWNARLKIALGSARGLAYLHHDCSPKIVH 436

Query:   248 RDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGYIALELVYTMVVTEKCV 306
             RD            E  V+DFG  +LL D D+   T+ AGT+GY+A E +     TEK  
Sbjct:   437 RDIKSSNILLNDKLEPRVSDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQNGRATEKSD 496

Query:   307 IYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKII----QDIIL 362
             +YSFGV+ LE++ G  P +             M   +   RL   I+++      + +  
Sbjct:   497 VYSFGVLLLELVTGKRPTDPIFVKRGLNVVGWMNTVLKENRLEDVIDKRCTDVDEESVEA 556

Query:   363 VSTIALACLRSKPKSRPTMQRISQELE 389
             +  IA  C  + P++RP M +++Q LE
Sbjct:   557 LLEIAERCTDANPENRPAMNQVAQLLE 583

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 7.5e-34, Sum P(2) = 7.5e-34
 Identities = 74/227 (32%), Positives = 110/227 (48%)

Query:   168 KVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIV 227
             +V  L  + H          ++      +Y+YM  GSL  +L +      L W  R  I+
Sbjct:   839 EVKTLGSIRHKNIVRFLGCCWNKNTRLLMYDYMSNGSLGSLLHERSGVCSLGWEVRYKII 898

Query:   228 KSVAHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDS---SNRTLQ 284
                A  L+YLHHDC P IVHRD            E ++ DFG  +L+D      S+ T+ 
Sbjct:   899 LGAAQGLAYLHHDCVPPIVHRDIKANNILIGPDFEPYIGDFGLAKLVDDGDFARSSNTI- 957

Query:   285 AGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGP---KIMLI 341
             AG+YGYIA E  Y+M +TEK  +YS+GVV LEVL G  P +              KI  I
Sbjct:   958 AGSYGYIAPEYGYSMKITEKSDVYSYGVVVLEVLTGKQPIDPTIPDGLHIVDWVKKIRDI 1017

Query:   342 DILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
              ++ Q L      ++ ++++    +AL C+   P+ RPTM+ ++  L
Sbjct:  1018 QVIDQGLQARPESEV-EEMMQTLGVALLCINPIPEDRPTMKDVAAML 1063

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00031862001 SubName- Full=Chromosome undetermined scaffold_60, whole genome shotgun sequence; (722 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	412
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	5e-28
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-27
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	9e-27
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-23
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	7e-22
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-20
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	3e-20
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	5e-20
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	1e-19
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	1e-18
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-18
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	4e-18
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	1e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-17
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	3e-16
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	1e-15
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	2e-14
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	2e-14
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	2e-14
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	3e-14
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	3e-14
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	4e-14
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	8e-14
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	3e-13
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	5e-13
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	5e-13
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	1e-12
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	2e-12
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	2e-12
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	2e-12
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	2e-12
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	4e-12
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	5e-12
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	9e-12
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	9e-12
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	3e-11
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	3e-11
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	4e-11
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	4e-11
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	5e-11
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	5e-11
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	6e-11
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	6e-11
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	9e-11
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	1e-10
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	1e-10
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	2e-10
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	3e-10
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	3e-10
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	3e-10
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	3e-10
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	5e-10
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	6e-10
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	7e-10
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	7e-10
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	7e-10
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	7e-10
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	8e-10
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	8e-10
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	1e-09
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-09
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	1e-09
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	1e-09
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	1e-09
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	2e-09
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	2e-09
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	2e-09
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	2e-09
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	3e-09
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	4e-09
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	5e-09
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	5e-09
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	5e-09
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	5e-09
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	7e-09
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	7e-09
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	2e-08
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	3e-08
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	3e-08
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	3e-08
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	4e-08
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	4e-08
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	8e-08
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	1e-07
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	1e-07
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	1e-07
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	1e-07
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	2e-07
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	2e-07
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	2e-07
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	3e-07
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	3e-07
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	3e-07
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	4e-07
cd05104	375	cd05104, PTKc_Kit, Catalytic domain of the Protein	4e-07
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	4e-07
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	4e-07
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	5e-07
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	6e-07
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	7e-07
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	7e-07
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	8e-07
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	8e-07
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	8e-07
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	9e-07
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	9e-07
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	1e-06
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	1e-06
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	1e-06
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	1e-06
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	1e-06
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	1e-06
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	1e-06
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	1e-06
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	1e-06
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	1e-06
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	2e-06
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	2e-06
PHA03390	267	PHA03390, pk1, serine/threonine-protein kinase 1;	2e-06
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	2e-06
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	2e-06
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	2e-06
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	2e-06
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	2e-06
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	2e-06
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	2e-06
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	2e-06
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	3e-06
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	3e-06
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	3e-06
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	4e-06
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	4e-06
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	4e-06
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	4e-06
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	4e-06
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	5e-06
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	5e-06
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	5e-06
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	6e-06
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	6e-06
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	7e-06
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	7e-06
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	7e-06
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	7e-06
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	8e-06
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	1e-05
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	1e-05
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	1e-05
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	1e-05
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	2e-05
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	2e-05
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	2e-05
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	2e-05
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	3e-05
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	3e-05
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	3e-05
cd05105	400	cd05105, PTKc_PDGFR_alpha, Catalytic domain of the	3e-05
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	3e-05
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	3e-05
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	3e-05
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	3e-05
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	3e-05
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	4e-05
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	4e-05
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	4e-05
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	4e-05
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	4e-05
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	4e-05
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	4e-05
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	5e-05
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	5e-05
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	5e-05
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	6e-05
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	7e-05
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	7e-05
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	8e-05
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	8e-05
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	9e-05
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	9e-05
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	1e-04
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	1e-04
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	1e-04
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	1e-04
PHA03210	501	PHA03210, PHA03210, serine/threonine kinase US3; P	1e-04
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	2e-04
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	2e-04
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	2e-04
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	2e-04
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	2e-04
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	2e-04
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	2e-04
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	3e-04
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	3e-04
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	3e-04
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	3e-04
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	3e-04
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	4e-04
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	4e-04
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	4e-04
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	4e-04
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	4e-04
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	4e-04
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	5e-04
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	5e-04
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	6e-04
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	6e-04
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	7e-04
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	7e-04
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	7e-04
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	7e-04
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	7e-04
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	8e-04
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	8e-04
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	9e-04
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	9e-04
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	0.001
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	0.001
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	0.001
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	0.001
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	0.001
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	0.001
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	0.001
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	0.001
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	0.001
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	0.001
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	0.002
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	0.002
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	0.002
cd05076	274	cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) do	0.002
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	0.002
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	0.002
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	0.002
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	0.002
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	0.002
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	0.002
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	0.003
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	0.003
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	0.003
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	0.003
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	0.004
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	0.004
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	0.004

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  109 bits (275), Expect = 5e-28
 Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 30/191 (15%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSA----------------------FVV 187
           +G GG+ +VY A     GK VA+K +   ++                           V 
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 188 YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVH 247
                ++ + EY E GSL  +L++++   +L+    + I+  +   L YLH +    I+H
Sbjct: 61  EDENHLYLVMEYCEGGSLKDLLKENE--GKLSEDEILRILLQILEGLEYLHSN---GIIH 115

Query: 248 RDISSNNILLNS-NLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE-LVYTMVVTEKC 305
           RD+   NILL+S N +  +ADFG  +LL  D S      GT  Y+A E L+     +EK 
Sbjct: 116 RDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKS 175

Query: 306 VIYSFGVVALE 316
            I+S GV+  E
Sbjct: 176 DIWSLGVILYE 186

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  109 bits (274), Expect = 2e-27
 Identities = 64/267 (23%), Positives = 101/267 (37%), Gaps = 42/267 (15%)

Query: 145 FHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETE----------------DSAFVV 187
           + I   +G G +  VY A +   GK+VA+K +   + +                    +V
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIV 60

Query: 188 ------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC 241
                      ++ + EY E G LF +L+     +  +  R    ++ +  AL YLH   
Sbjct: 61  RLYDVFEDEDKLYLVMEYCEGGDLFDLLKKRG-RLSEDEARF--YLRQILSALEYLHSKG 117

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVV 301
              IVHRD+   NILL+ +    +ADFG  R LD      T   GT  Y+A E++     
Sbjct: 118 ---IVHRDLKPENILLDEDGHVKLADFGLARQLD-PGEKLTTFVGTPEYMAPEVLLGKGY 173

Query: 302 TEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD-- 359
            +   I+S GV+  E+L G  P               +   I   +   P  +  I    
Sbjct: 174 GKAVDIWSLGVILYELLTGKPP------FPGDDQLLELFKKIGKPKPPFPPPEWDISPEA 227

Query: 360 IILVSTIALACLRSKPKSRPTMQRISQ 386
             L+       L   P+ R T +   Q
Sbjct: 228 KDLIR----KLLVKDPEKRLTAEEALQ 250

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  107 bits (269), Expect = 9e-27
 Identities = 68/270 (25%), Positives = 104/270 (38%), Gaps = 42/270 (15%)

Query: 145 FHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF------------------ 185
           + +   +G+G + +VYKA     GK+VA+K L     +                      
Sbjct: 1   YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNI 60

Query: 186 -----VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHD 240
                       ++ + EY E G LF  L        L+      I   +   L YLH +
Sbjct: 61  VRLIDAFEDKDHLYLVMEYCEGGDLFDYLS---RGGPLSEDEAKKIALQILRGLEYLHSN 117

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE-LVYTM 299
               I+HRD+   NILL+ N    +ADFG  + L   SS+ T   GT  Y+A E L+   
Sbjct: 118 ---GIIHRDLKPENILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLGGN 174

Query: 300 VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD 359
               K  ++S GV+  E+L G  P         S    +  + ++ + L PP+     + 
Sbjct: 175 GYGPKVDVWSLGVILYELLTGKPP--------FSGENILDQLQLIRRILGPPLEFDEPKW 226

Query: 360 IILVST---IALACLRSKPKSRPTMQRISQ 386
                    +   CL   P  RPT + I Q
Sbjct: 227 SSGSEEAKDLIKKCLNKDPSKRPTAEEILQ 256

Length = 260

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 98.4 bits (246), Expect = 1e-23
 Identities = 54/209 (25%), Positives = 86/209 (41%), Gaps = 42/209 (20%)

Query: 144 YFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSAFVV--------------- 187
            F I   IG GG+  VYKA     GK VA+K +     E    ++               
Sbjct: 1   LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIV 60

Query: 188 ------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMN------IVKSVAHALS 235
                      ++ + E+   GSL        + ++ +  + +       + K +   L 
Sbjct: 61  KYYGSYLKKDELWIVMEFCSGGSL-------KDLLK-STNQTLTESQIAYVCKELLKGLE 112

Query: 236 YLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGT-VRLLDVDSSNRTLQAGTYGYIALE 294
           YLH   +  I+HRDI + NILL S+ E  + DFG   +L D  + N     GT  ++A E
Sbjct: 113 YLH---SNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTM--VGTPYWMAPE 167

Query: 295 LVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           ++       K  I+S G+ A+E+  G  P
Sbjct: 168 VINGKPYDYKADIWSLGITAIELAEGKPP 196

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 93.8 bits (234), Expect = 7e-22
 Identities = 68/268 (25%), Positives = 101/268 (37%), Gaps = 49/268 (18%)

Query: 143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHHSETED----------------SAF 185
                   +G G    VYK    P GK+ ALKK+H    E+                S +
Sbjct: 1   SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPY 60

Query: 186 VV------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRM--NIVKSVAHALSYL 237
           VV      Y    +  + EYM+ GSL      D           +   I + +   L YL
Sbjct: 61  VVKCYGAFYKEGEISIVLEYMDGGSL-----ADLLKKVGKIPEPVLAYIARQILKGLDYL 115

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVY 297
           H      I+HRDI  +N+L+NS  E  +ADFG  ++L+          GT  Y++ E + 
Sbjct: 116 HTK--RHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQ 173

Query: 298 TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIM-LIDILYQRLSPPINQKI 356
               +    I+S G+  LE  +G  P            P    L+  +     P +  + 
Sbjct: 174 GESYSYAADIWSLGLTLLECALGKFP------FLPPGQPSFFELMQAICDGPPPSLPAEE 227

Query: 357 I----QDIILVSTIALACLRSKPKSRPT 380
                +D I       ACL+  PK RP+
Sbjct: 228 FSPEFRDFI------SACLQKDPKKRPS 249

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 89.5 bits (223), Expect = 2e-20
 Identities = 64/273 (23%), Positives = 105/273 (38%), Gaps = 57/273 (20%)

Query: 151 IGTGGYDSVYKAEL--PDGKV---VALKKL--HHSETEDSAF------------------ 185
           +G G +  VYK +L    GK    VA+K L    SE +   F                  
Sbjct: 7   LGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKL 66

Query: 186 --VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
             V    + ++ + EYME G L   LR +   +  + +  ++    +A  + YL      
Sbjct: 67  LGVCTEEEPLYIVMEYMEGGDLLSYLRKNRPKL--SLSDLLSFALQIARGMEYLESKN-- 122

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA-GTYGYIALELVYTMVVT 302
             +HRD+++ N L+  NL   ++DFG  R L  D   R         ++A E +     T
Sbjct: 123 -FIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKLPIRWMAPESLKEGKFT 181

Query: 303 EKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ-----RLSPPIN--QK 355
            K  ++SFGV+  E          + +L     P +   ++L       RL  P N   +
Sbjct: 182 SKSDVWSFGVLLWE----------IFTLGEQPYPGMSNEEVLEYLKNGYRLPQPPNCPPE 231

Query: 356 IIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
           +         + L C    P+ RPT   + + L
Sbjct: 232 LYD-------LMLQCWAEDPEDRPTFSELVEIL 257

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 89.1 bits (222), Expect = 3e-20
 Identities = 63/273 (23%), Positives = 104/273 (38%), Gaps = 56/273 (20%)

Query: 151 IGTGGYDSVYKAEL----PDGKV-VALKKL--HHSETEDSAF------------------ 185
           +G G +  VYK  L       +V VA+K L    SE +   F                  
Sbjct: 7   LGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVKL 66

Query: 186 --VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
             V    + +  + EYM  G L   LR +    EL+ +  ++    +A  + YL      
Sbjct: 67  LGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPK-ELSLSDLLSFALQIARGMEYLESKN-- 123

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA-GTYGYIALELVYTMVVT 302
             +HRD+++ N L+  NL   ++DFG  R L  D   +         ++A E +     T
Sbjct: 124 -FIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKLPIRWMAPESLKEGKFT 182

Query: 303 EKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ-----RLSPPIN--QK 355
            K  ++SFGV+  E+           +L     P +   ++L       RL  P N   +
Sbjct: 183 SKSDVWSFGVLLWEI----------FTLGEEPYPGMSNAEVLEYLKKGYRLPKPPNCPPE 232

Query: 356 IIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
           + +       + L C    P+ RPT   + + L
Sbjct: 233 LYK-------LMLQCWAEDPEDRPTFSELVEIL 258

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 90.6 bits (223), Expect = 5e-20
 Identities = 67/273 (24%), Positives = 113/273 (41%), Gaps = 41/273 (15%)

Query: 145 FHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF------------------- 185
           + I   +G G +  VY A   D K+VALK L       S                     
Sbjct: 2   YRILRKLGEGSFGEVYLAR--DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPN 59

Query: 186 ------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH 239
                        ++ + EY++ GSL  +L+       L+ +  + I+  +  AL YLH 
Sbjct: 60  IVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLH- 118

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFV-ADFGTVRLLDVDSSNRTLQA------GTYGYIA 292
             +  I+HRDI   NILL+ +       DFG  +LL    S  ++ A      GT GY+A
Sbjct: 119 --SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMA 176

Query: 293 LELVYTMV---VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS 349
            E++  +     +    I+S G+   E+L G  P E   + S++S    +++++    L+
Sbjct: 177 PEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLA 236

Query: 350 PPINQKIIQDII-LVSTIALACLRSKPKSRPTM 381
            P++    + I    S +    L   PK+R + 
Sbjct: 237 SPLSPSNPELISKAASDLLKKLLAKDPKNRLSS 269

Length = 384

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 87.6 bits (218), Expect = 1e-19
 Identities = 65/275 (23%), Positives = 104/275 (37%), Gaps = 60/275 (21%)

Query: 151 IGTGGYDSVYKAEL-----PDGKVVALKKL--HHSETEDSAF------------------ 185
           +G G +  VYK  L          VA+K L    SE E   F                  
Sbjct: 7   LGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRL 66

Query: 186 --VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH-HDCT 242
             V    + ++ + EYM  G L   LR   E + L     + +   +A  + YL   +  
Sbjct: 67  LGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKD--LLQMALQIAKGMEYLESKNF- 123

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYG---YIALELVYTM 299
              VHRD+++ N L+  NL   ++DFG  R +  D   R    G      ++A E +   
Sbjct: 124 ---VHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRG-GGKLPIKWMAPESLKDG 179

Query: 300 VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ-----RLSPPIN- 353
             T K  ++SFGV+  E          + +L     P +   ++L       RL  P N 
Sbjct: 180 KFTSKSDVWSFGVLLWE----------IFTLGEQPYPGMSNEEVLELLEDGYRLPRPENC 229

Query: 354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
              + +++      L C    P+ RPT   + ++L
Sbjct: 230 PDELYELM------LQCWAYDPEDRPTFSELVEDL 258

Length = 258

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 84.9 bits (211), Expect = 1e-18
 Identities = 71/266 (26%), Positives = 108/266 (40%), Gaps = 57/266 (21%)

Query: 150 CIGTGGYDSVYKAELPD-GKVVALKK--LHHSETEDSA---------------FVV-Y-- 188
            +G G + SVY A   D G+++A+K   L     E+                  +V Y  
Sbjct: 7   LLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYG 66

Query: 189 ----SPQCMFFIY-EYMERGSLFCVLRDD---DEAIELNWTRRMNIVKSVAHALSYLH-H 239
                 +    I+ EY+  GSL  +L+      E +   +TR+      +   L+YLH +
Sbjct: 67  SERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQ------ILEGLAYLHSN 120

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFGT-VRLLDVDSSNRTLQ-AGTYGYIALELVY 297
                IVHRDI   NIL++S+    +ADFG   RL D+++   T    GT  ++A E++ 
Sbjct: 121 G----IVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIR 176

Query: 298 TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI- 356
                    I+S G   +E+  G  P       S    P   L  I      P I + + 
Sbjct: 177 GEEYGRAADIWSLGCTVIEMATGKPP------WSELGNPMAALYKIGSSGEPPEIPEHLS 230

Query: 357 --IQDIILVSTIALACLRSKPKSRPT 380
              +D +        CLR  PK RPT
Sbjct: 231 EEAKDFL------RKCLRRDPKKRPT 250

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 84.1 bits (209), Expect = 2e-18
 Identities = 63/279 (22%), Positives = 109/279 (39%), Gaps = 59/279 (21%)

Query: 151 IGTGGYDSVYKAELPDGK----VVALKKLHHSETED--SAF------------------- 185
           +G G +  VYK +L         VA+K L    +E+    F                   
Sbjct: 3   LGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLL 62

Query: 186 -VVYSPQCMFFIYEYMERGSLFCVLR------DDDEAIELNWTRRMNIVKSVAHALSYLH 238
            V    + ++ + EYME G L   LR         E   L+    ++    +A  + YL 
Sbjct: 63  GVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLA 122

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGT--YGYIALELV 296
                  VHRD+++ N L+  +L   ++DFG  R +  D   R    G     ++A E +
Sbjct: 123 S---KKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESL 179

Query: 297 YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ-----RLSPP 351
              + T K  ++SFGV+  E+           +L ++  P +   ++L       RL  P
Sbjct: 180 KDGIFTSKSDVWSFGVLLWEI----------FTLGATPYPGLSNEEVLEYLRKGYRLPKP 229

Query: 352 IN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                 + +++      L+C +  P+ RPT   + + LE
Sbjct: 230 EYCPDELYELM------LSCWQLDPEDRPTFSELVERLE 262

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 83.8 bits (208), Expect = 4e-18
 Identities = 58/200 (29%), Positives = 91/200 (45%), Gaps = 38/200 (19%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLH-HSETEDSAF-------------VV--YS---- 189
           IG G    VYKA +   GK VA+KK+    + ++                +V  Y     
Sbjct: 27  IGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLV 86

Query: 190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMN------IVKSVAHALSYLHHDCTP 243
              ++ + EYM+ GSL        + I  N+ R MN      + + V   L YLH   + 
Sbjct: 87  GDELWVVMEYMDGGSL-------TDIITQNFVR-MNEPQIAYVCREVLQGLEYLH---SQ 135

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTE 303
           +++HRDI S+NILL+ +    +ADFG    L  + S R    GT  ++A E++       
Sbjct: 136 NVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGP 195

Query: 304 KCVIYSFGVVALEVLMGTHP 323
           K  I+S G++ +E+  G  P
Sbjct: 196 KVDIWSLGIMCIEMAEGEPP 215

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 81.9 bits (203), Expect = 1e-17
 Identities = 71/263 (26%), Positives = 106/263 (40%), Gaps = 58/263 (22%)

Query: 150 CIGTGGYDSVYKA-ELPDGKVVALKK--LHHSETE--------------DSAFVV----- 187
           CIG G +  VYKA +    +VVA+K   L  +E E               S ++      
Sbjct: 8   CIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGS 67

Query: 188 YSPQC-MFFIYEYMERGSLFCVLR---DDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
           +     ++ I EY   GS   +L+    D+  I         I++ V   L YLH +   
Sbjct: 68  FLKGSKLWIIMEYCGGGSCLDLLKPGKLDETYIAF-------ILREVLLGLEYLHEEGK- 119

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTE 303
             +HRDI + NILL+   +  +ADFG    L    S R    GT  ++A E++      E
Sbjct: 120 --IHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDE 177

Query: 304 KCVIYSFGVVALEVLMGT------HPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII 357
           K  I+S G+ A+E+  G       HP  +L  +  ++ P +          S P      
Sbjct: 178 KADIWSLGITAIELAKGEPPLSDLHPMRVLFLIPKNNPPSLEGNKF-----SKPFKD--- 229

Query: 358 QDIILVSTIALACLRSKPKSRPT 380
                VS     CL   PK RP+
Sbjct: 230 ----FVS----LCLNKDPKERPS 244

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 83.4 bits (206), Expect = 4e-17
 Identities = 100/395 (25%), Positives = 166/395 (42%), Gaps = 48/395 (12%)

Query: 26  SFLKSDMSFNNLDGEIPT---YLRDNPPKSFVGNKGLCG--HVQGFLSCFQRHRLAPSFI 80
           S ++ ++S N+L G +P+   +L  N   +  GN  LCG     G   C +R R  PS+ 
Sbjct: 572 SLVQVNISHNHLHGSLPSTGAFLAINA-SAVAGNIDLCGGDTTSGLPPC-KRVRKTPSWW 629

Query: 81  LSVKIFLPLTPILAFTIFGFILLLKGKSENLKLVTRA----------AKNGDVFSVWNYD 130
             +   L    +LA   FGF+ +    +  LK V             +K     ++ +  
Sbjct: 630 FYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITINDIL 689

Query: 131 GKILYENLI-DATEYFHIRYCIGTGGYDSVYKA-----ELPDGKVVALKKLHHSETEDSA 184
             +  EN+I    +    +      G   V K       +P  ++  + KL H       
Sbjct: 690 SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEIADMGKLQHPNIVKLI 749

Query: 185 FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS 244
            +  S +  + I+EY+E  +L  VLR+      L+W RR  I   +A AL +LH  C+P+
Sbjct: 750 GLCRSEKGAYLIHEYIEGKNLSEVLRN------LSWERRRKIAIGIAKALRFLHCRCSPA 803

Query: 245 IVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEK 304
           +V  ++S   I+++   E  +       LL  D+      A    Y+A E   T  +TEK
Sbjct: 804 VVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTDTKCFISSA----YVAPETRETKDITEK 858

Query: 305 CVIYSFGVVALEVLMGTHPGELLLSLSSS---------SGPKI-MLIDILYQRLSPPINQ 354
             IY FG++ +E+L G  P +    +  S         S   + M ID   +     +NQ
Sbjct: 859 SDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRG-DVSVNQ 917

Query: 355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
               +I+ V  +AL C  + P +RP    + + LE
Sbjct: 918 N---EIVEVMNLALHCTATDPTARPCANDVLKTLE 949

Length = 968

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 77.8 bits (192), Expect = 3e-16
 Identities = 77/283 (27%), Positives = 121/283 (42%), Gaps = 52/283 (18%)

Query: 139 IDATEYFHIRYCIGTGGYDSVYKA--ELPDGKV--VALKKLH--HSETEDSAF------- 185
           ID + Y  I   IG G +  V +   +LP  K   VA+K L    S+ +   F       
Sbjct: 1   IDPS-YVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIM 59

Query: 186 -------------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH 232
                        VV   + +  I EYME GSL   LR++D   +    + + +++ +A 
Sbjct: 60  GQFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLRENDG--KFTVGQLVGMLRGIAS 117

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYG--Y 290
            + YL        VHRD+++ NIL+NSNL   V+DFG  R L+   +  T + G     +
Sbjct: 118 GMKYLSEMNY---VHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRW 174

Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVL-MGTHPGELLLSLSSSSGPKIM-LIDILYQRL 348
            A E +     T    ++SFG+V  EV+  G  P          S   ++  ++  Y RL
Sbjct: 175 TAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYW------DMSNQDVIKAVEDGY-RL 227

Query: 349 SPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            PP++    + Q       + L C +     RPT  +I   L+
Sbjct: 228 PPPMDCPSALYQ-------LMLDCWQKDRNERPTFSQIVSTLD 263

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 76.1 bits (188), Expect = 1e-15
 Identities = 55/212 (25%), Positives = 80/212 (37%), Gaps = 48/212 (22%)

Query: 145 FHIRYCIGTGGYDSVYKAE-LPDGKVVA-----------------------LKKLHHS-- 178
           + +   IG G +  VYK   L  G  VA                       LK L H   
Sbjct: 2   YQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNI 61

Query: 179 -------ETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
                  ET DS         ++ I EY E GSL  +++          +     V  V 
Sbjct: 62  VKYIGSIETSDS---------LYIILEYAENGSLRQIIKKFGP---FPESLVAVYVYQVL 109

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI 291
             L+YLH      ++HRDI + NIL   +    +ADFG    L+  S +     GT  ++
Sbjct: 110 QGLAYLH---EQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWM 166

Query: 292 ALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           A E++     +    I+S G   +E+L G  P
Sbjct: 167 APEVIEMSGASTASDIWSLGCTVIELLTGNPP 198

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 62/288 (21%), Positives = 109/288 (37%), Gaps = 72/288 (25%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALK-----------KLHHSETE--------DSAFVV--- 187
           IG G + +V  A E    K  A+K           K+ + + E            ++   
Sbjct: 9   IGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLY 68

Query: 188 ---YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS 244
                 + ++F+ EY   G L   +R    +++   TR       +  AL YLH   +  
Sbjct: 69  YTFQDEENLYFVLEYAPNGELLQYIRKY-GSLDEKCTR--FYAAEILLALEYLH---SKG 122

Query: 245 IVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA------------------- 285
           I+HRD+   NILL+ ++   + DFGT ++LD +SS  + +                    
Sbjct: 123 IIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASF 182

Query: 286 -GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP----GELLLSLSSSSGPKIML 340
            GT  Y++ EL+      +   +++ G +  ++L G  P     E L         KI+ 
Sbjct: 183 VGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQ------KILK 236

Query: 341 IDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
           ++  +    PP      +D+I         L   P+ R  +     EL
Sbjct: 237 LEYSF----PPNFPPDAKDLI------EKLLVLDPQDRLGVNEGYDEL 274

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 63/273 (23%), Positives = 110/273 (40%), Gaps = 56/273 (20%)

Query: 145 FHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHH---SETEDSA---------------- 184
           + +   IG G + +V K     DGK++  K++ +   +E E                   
Sbjct: 2   YEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNI 61

Query: 185 ------FVVYSPQCMFFIYEYMERGSLFCVL---RDDDEAIELN--WTRRMNIVKSVAHA 233
                  +  S Q ++ + EY E G L  ++   + + + IE    W     I+  +  A
Sbjct: 62  VRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIW----RILTQLLLA 117

Query: 234 LSYLHH--DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI 291
           L   H+  D   +++HRD+   NI L++N    + DFG  ++L  DSS      GT  Y+
Sbjct: 118 LYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYM 177

Query: 292 ALELVYTMVVTEKCVIYSFGVVALEVLMGTHP----GELLLSLSSSSGPKIMLIDILYQR 347
           + E +  M   EK  I+S G +  E+   + P     +L L+     G        +  R
Sbjct: 178 SPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKIKEGK----FRRIPYR 233

Query: 348 LSPPINQKIIQDIILVSTIALACLRSKPKSRPT 380
            S  +N+ +I+          + L   P  RP+
Sbjct: 234 YSSELNE-VIK----------SMLNVDPDKRPS 255

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 65/262 (24%), Positives = 108/262 (41%), Gaps = 48/262 (18%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALKKLHHSETE----------------DSAFVV------ 187
           +G G    V K    P GK++A+K +     E                +S ++V      
Sbjct: 9   LGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAF 68

Query: 188 YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVH 247
           Y+   +    EYM+ GSL  +L++    I      ++ +  +V   L+YLH      I+H
Sbjct: 69  YNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAV--AVLKGLTYLHEKH--KIIH 124

Query: 248 RDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVI 307
           RD+  +NIL+NS  +  + DFG    L V+S  +T   GT  Y+A E +     + K  I
Sbjct: 125 RDVKPSNILVNSRGQIKLCDFGVSGQL-VNSLAKTF-VGTSSYMAPERIQGNDYSVKSDI 182

Query: 308 YSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ-------RLSPPINQKIIQDI 360
           +S G+  +E+  G  P          + P   + ++L         RL         QD 
Sbjct: 183 WSLGLSLIELATGRFP------YPPENDPPDGIFELLQYIVNEPPPRLPSGKFSPDFQDF 236

Query: 361 ILVSTIALACLRSKPKSRPTMQ 382
           + +      CL   P+ RP+ +
Sbjct: 237 VNL------CLIKDPRERPSYK 252

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 72/291 (24%), Positives = 109/291 (37%), Gaps = 62/291 (21%)

Query: 138 LIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDS------------- 183
           L D T  F +   IG G Y  VYKA     G++VA+K +   E E+              
Sbjct: 1   LPDPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYS 60

Query: 184 ----------AFVVYSPQCM----FFIYEYMERGS---LFCVLRDDDEAIELNWTRRMNI 226
                     AF+  +P       + + E    GS   L   LR   + ++  W     I
Sbjct: 61  NHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAY--I 118

Query: 227 VKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAG 286
           ++     L+YLH +    ++HRDI   NILL  N E  + DFG    LD     R    G
Sbjct: 119 LRETLRGLAYLHEN---KVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIG 175

Query: 287 TYGYIALELV-----YTMVVTEKCVIYSFGVVALEV------LMGTHPGELLLSLSSSSG 335
           T  ++A E++            +  ++S G+ A+E+      L   HP   L  +  +  
Sbjct: 176 TPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMRALFKIPRNPP 235

Query: 336 PKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQ 386
           P +          SP    K   D I        CL    + RP M+ + +
Sbjct: 236 PTLK---------SPENWSKKFNDFISE------CLIKNYEQRPFMEELLE 271

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 71.8 bits (176), Expect = 3e-14
 Identities = 60/262 (22%), Positives = 108/262 (41%), Gaps = 45/262 (17%)

Query: 145 FHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETE-----------------DSAFV 186
           F I   IG G +  V+K     D +V A+K++  S+                   DS+++
Sbjct: 2   FEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYI 61

Query: 187 VYSPQC------MFFIYEYMERGSLFCVLRDDDEAIELNWTRRM---NIVKSVAHALSYL 237
           +   +       +  + EY E G L        + +++   R +    + +     L  L
Sbjct: 62  IRYYESFLDKGKLNIVMEYAENGDL-------HKLLKMQRGRPLPEDQVWRFFIQILLGL 114

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVY 297
            H  +  I+HRDI S N+ L++     + D G  +LL  +++      GT  Y++ EL  
Sbjct: 115 AHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCE 174

Query: 298 TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII 357
                EK  +++ GVV  E   G HP +     +++ G  I+ I    + + PP++Q   
Sbjct: 175 DKPYNEKSDVWALGVVLYECCTGKHPFD-----ANNQGALILKI---IRGVFPPVSQMYS 226

Query: 358 QDIILVSTIALACLRSKPKSRP 379
           Q +  +      CL    + RP
Sbjct: 227 QQLAQLID---QCLTKDYRQRP 245

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 71.7 bits (176), Expect = 4e-14
 Identities = 66/247 (26%), Positives = 111/247 (44%), Gaps = 22/247 (8%)

Query: 146 HIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSL 205
            +R  I     D + K +    +V ALK+L H        V    + ++ I E ME+GSL
Sbjct: 30  RVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSL 89

Query: 206 FCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFV 265
              LR  +  + L     +++   VA  ++YL      + +HRD+++ NIL+  +L   V
Sbjct: 90  LAFLRSPEGQV-LPVASLIDMACQVAEGMAYLEEQ---NSIHRDLAARNILVGEDLVCKV 145

Query: 266 ADFGTVRLLDVD---SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GT 321
           ADFG  RL+  D   SS++ +    Y + A E       + K  ++SFG++  E+   G 
Sbjct: 146 ADFGLARLIKEDVYLSSDKKI---PYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQ 202

Query: 322 HPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTM 381
            P         ++      I   Y+   P    K  Q+I     I L C  ++P+ RP+ 
Sbjct: 203 VPYP-----GMNNHEVYDQITAGYRMPCPA---KCPQEI---YKIMLECWAAEPEDRPSF 251

Query: 382 QRISQEL 388
           + + +EL
Sbjct: 252 KALREEL 258

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 70.6 bits (174), Expect = 8e-14
 Identities = 73/270 (27%), Positives = 110/270 (40%), Gaps = 57/270 (21%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALKK--LHHSETEDSAFVVYSPQCM-----FFI---YE- 198
           IG G +  VY      DGK+  LK+  L +   ++    +   + +       I   YE 
Sbjct: 8   IGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYES 67

Query: 199 YMERGSLFCVL-----RDDDEAIE--------------LNWTRRMNIVKSVAHALSYLHH 239
           + E+G L  V+      D  + I+              L+W  ++        AL YLH 
Sbjct: 68  FEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQL------CLALKYLHS 121

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM 299
                I+HRDI   NI L SN    + DFG  ++L           GT  Y++ EL    
Sbjct: 122 R---KILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNK 178

Query: 300 VVTEKCVIYSFGVVALEVLMGTHP--GELLLSLSSSSGPKIMLIDILYQRLSPPINQKII 357
               K  I+S G V  E+    HP  GE LL L+     KI+      +   PPI  +  
Sbjct: 179 PYNYKSDIWSLGCVLYELCTLKHPFEGENLLELAL----KIL------KGQYPPIPSQYS 228

Query: 358 QDII-LVSTIALACLRSKPKSRPTMQRISQ 386
            ++  LVS    + L+  P+ RP++ +I Q
Sbjct: 229 SELRNLVS----SLLQKDPEERPSIAQILQ 254

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 70/277 (25%), Positives = 115/277 (41%), Gaps = 75/277 (27%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALKKLH----HSETED--------------------SAF 185
           IG G    VY A  LP+ + VA+K++      +  ++                    ++F
Sbjct: 9   IGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSF 68

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDD------DEAIELNWTRRMNIVKSVAHALSYLHH 239
           VV     ++ +  Y+  GSL  +++        DEAI         ++K V   L YLH 
Sbjct: 69  VV--GDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAI------IATVLKEVLKGLEYLHS 120

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL--DVDSSNRTLQ--AGTYGYIALEL 295
           +     +HRDI + NILL  +    +ADFG    L    D + +  +   GT  ++A E+
Sbjct: 121 N---GQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEV 177

Query: 296 V-----YTMVVTEKCVIYSFGVVALEVLMGTHPGE-------LLLSLSSSSGPKIMLIDI 343
           +     Y      K  I+SFG+ A+E+  G  P         L+L+L +   P  +    
Sbjct: 178 MEQVHGY----DFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQND--PPSLETGA 231

Query: 344 LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPT 380
            Y++ S     K  + +I +      CL+  P  RPT
Sbjct: 232 DYKKYS-----KSFRKMISL------CLQKDPSKRPT 257

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 68.6 bits (167), Expect = 5e-13
 Identities = 71/274 (25%), Positives = 111/274 (40%), Gaps = 53/274 (19%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETED-----SAFVVYSPQC- 192
           D  E F     IG G +  V+K  +    KVVA+K +   E ED        +    QC 
Sbjct: 1   DPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCD 60

Query: 193 ----------------MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSY 236
                           ++ I EY+  GS   +L    E   L+ T+   I++ +   L Y
Sbjct: 61  SPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLL----EPGPLDETQIATILREILKGLDY 116

Query: 237 LHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELV 296
           LH +     +HRDI + N+LL+ + E  +ADFG    L      R    GT  ++A E++
Sbjct: 117 LHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVI 173

Query: 297 YTMVVTEKCVIYSFGVVALEVLMGT------HPGELLLSLSSSSGPKIMLIDILYQRLSP 350
                  K  I+S G+ A+E+  G       HP ++L  +  ++ P       L    S 
Sbjct: 174 KQSAYDSKADIWSLGITAIELAKGEPPHSELHPMKVLFLIPKNNPPT------LEGNYSK 227

Query: 351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
           P+ +              ACL  +P  RPT + +
Sbjct: 228 PLKE-----------FVEACLNKEPSFRPTAKEL 250

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 68.6 bits (168), Expect = 5e-13
 Identities = 66/267 (24%), Positives = 111/267 (41%), Gaps = 68/267 (25%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETED--------------------SAFVVYS 189
           IG G Y +VY+   +P G+VVALK ++    +D                         Y 
Sbjct: 9   IGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYY 68

Query: 190 PQCM-----FFIYEYMERGSLFCVLRD---DDEAIELNWTRRMNIVKSVAHALSYLHHDC 241
              +     + I EY E GS+  +++     ++ I +       I++ V  AL Y+H   
Sbjct: 69  GSYLKGPRLWIIMEYAEGGSVRTLMKAGPIAEKYISV-------IIREVLVALKYIHKV- 120

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVV 301
              ++HRDI + NIL+ +     + DFG   LL+ +SS R+   GT  ++A E     V+
Sbjct: 121 --GVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPE-----VI 173

Query: 302 TE------KCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN-- 353
           TE      K  I+S G+   E+  G  P         S       + ++ +   P +   
Sbjct: 174 TEGKYYDTKADIWSLGITIYEMATGNPP--------YSDVDAFRAMMLIPKSKPPRLEDN 225

Query: 354 --QKIIQDIILVSTIALACLRSKPKSR 378
              K++++ +       ACL  +PK R
Sbjct: 226 GYSKLLREFV------AACLDEEPKER 246

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 67.6 bits (165), Expect = 1e-12
 Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 37/211 (17%)

Query: 139 IDATEYFHIRYCIGTGGYDSVYKAEL-PDGK---VVALKKLH--HSETEDSAF------- 185
           ID +    I   IG G +  V +  L   GK    VA+K L   ++E +   F       
Sbjct: 1   IDVS-CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIM 59

Query: 186 -------------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH 232
                        VV   + +  I E+ME G+L   LR +D   +    + + +++ +A 
Sbjct: 60  GQFDHPNIIHLEGVVTKSRPVMIITEFMENGALDSFLRQNDG--QFTVIQLVGMLRGIAA 117

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI- 291
            + YL      + VHRD+++ NIL+NSNL   V+DFG  R L+ D+S+ T  +   G I 
Sbjct: 118 GMKYLSE---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIP 174

Query: 292 ----ALELVYTMVVTEKCVIYSFGVVALEVL 318
               A E +     T    ++S+G+V  EV+
Sbjct: 175 IRWTAPEAIAYRKFTSASDVWSYGIVMWEVM 205

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 46/195 (23%), Positives = 78/195 (40%), Gaps = 31/195 (15%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKL---HHSETEDSAF--------------------V 186
           IG G Y  VYKA +   G++VA+KK+     SE                          V
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDV 66

Query: 187 VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIV 246
                 ++ ++E+M+   L+ +++D      L  +   + +  +   L++ H      I+
Sbjct: 67  FRHKGDLYLVFEFMDT-DLYKLIKD--RQRGLPESLIKSYLYQLLQGLAFCHSH---GIL 120

Query: 247 HRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM-VVTEKC 305
           HRD+   N+L+N+     +ADFG  R         T    T  Y A EL+      +   
Sbjct: 121 HRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPV 180

Query: 306 VIYSFGVVALEVLMG 320
            I+S G +  E+L  
Sbjct: 181 DIWSVGCIFAELLSR 195

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 59/203 (29%), Positives = 87/203 (42%), Gaps = 29/203 (14%)

Query: 143 EYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSET-------------EDSAFVV- 187
           E F I   +G G Y SVYKA     G+VVA+K +   E               DS ++V 
Sbjct: 3   EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPYIVK 62

Query: 188 -----YSPQCMFFIYEYMERGSLFCVLRDDDEAIE--LNWTRRMNIVKSVAHALSYLHHD 240
                +    ++ + EY   GS+     D  +     L       I+      L YLH +
Sbjct: 63  YYGSYFKNTDLWIVMEYCGAGSV----SDIMKITNKTLTEEEIAAILYQTLKGLEYLHSN 118

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMV 300
                +HRDI + NILLN   +A +ADFG    L    + R    GT  ++A E++  + 
Sbjct: 119 ---KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIG 175

Query: 301 VTEKCVIYSFGVVALEVLMGTHP 323
              K  I+S G+ A+E+  G  P
Sbjct: 176 YNNKADIWSLGITAIEMAEGKPP 198

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 54/206 (26%), Positives = 83/206 (40%), Gaps = 47/206 (22%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLH-----------HSETE-------DSAFVV---Y 188
           +G G +  V    +   GK+ A+K L            H+ TE       +  F+V   Y
Sbjct: 1   LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHY 60

Query: 189 SPQC---MFFIYEYMERGSLFCVLRDD---DEAIELNWTRRMNIVKSVAHALSYLH-HDC 241
           + Q    ++ + EY   G LF  L  +    E       R       +  AL YLH    
Sbjct: 61  AFQTEEKLYLVLEYAPGGELFSHLSKEGRFSEE----RARF--YAAEIVLALEYLHSLG- 113

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELV----Y 297
              I++RD+   NILL+++    + DFG  + L  + S      GT  Y+A E++    Y
Sbjct: 114 ---IIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGY 170

Query: 298 TMVVTEKCVIYSFGVVALEVLMGTHP 323
              V      +S GV+  E+L G  P
Sbjct: 171 GKAVD----WWSLGVLLYEMLTGKPP 192

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 66.5 bits (162), Expect = 2e-12
 Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 35/203 (17%)

Query: 151 IGTGGYDSVYKA--ELPDGK--VVALKKLH--HSETEDSAF------------------- 185
           IG G +  V++   ++P  K   VA+K L   ++E +   F                   
Sbjct: 13  IGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLE 72

Query: 186 -VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS 244
            VV   +    I EYME G+L   LRD D   E +  + + +++ +A  + YL      +
Sbjct: 73  GVVTKFKPAMIITEYMENGALDKYLRDHDG--EFSSYQLVGMLRGIAAGMKYLSD---MN 127

Query: 245 IVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAG---TYGYIALELVYTMVV 301
            VHRD+++ NIL+NSNLE  V+DFG  R+L+ D       +G      + A E +     
Sbjct: 128 YVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKF 187

Query: 302 TEKCVIYSFGVVALEVL-MGTHP 323
           T    ++SFG+V  EV+  G  P
Sbjct: 188 TSASDVWSFGIVMWEVMSFGERP 210

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 70/276 (25%), Positives = 112/276 (40%), Gaps = 63/276 (22%)

Query: 143 EYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFVVYS----PQC----- 192
           E + +   IG+G Y  VYKA ++  G++VA+K +     +D   +        +C     
Sbjct: 3   EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNI 62

Query: 193 ------------MFFIYEYMERGSL---FCVLRDDDEAIELNWTRRMNIVKSVAHALSYL 237
                       ++ + EY   GSL   + V R     +++ +     + +     L+YL
Sbjct: 63  VAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAY-----VCRETLKGLAYL 117

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELV- 296
           H       +HRDI   NILL  + +  +ADFG    L    + R    GT  ++A E+  
Sbjct: 118 HET---GKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAA 174

Query: 297 ------YTMVVTEKCVIYSFGVVALEV------LMGTHPGELLLSLSSSSGPKIMLIDIL 344
                 Y      KC I++ G+ A+E+      +   HP   L  +S S+ P   L D  
Sbjct: 175 VERKGGY----DGKCDIWALGITAIELAELQPPMFDLHPMRALFLISKSNFPPPKLKD-- 228

Query: 345 YQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPT 380
            ++ SP     +  D I        CL   PK RPT
Sbjct: 229 KEKWSP-----VFHDFIKK------CLTKDPKKRPT 253

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 65.6 bits (161), Expect = 5e-12
 Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 30/147 (20%)

Query: 150 CIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF----------------------- 185
            +G G Y  VYKA +   G++VALKK+     E+                          
Sbjct: 6   KLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLD 65

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           V+++ + ++ ++EY +   L   L      +  N  +   I+  +   L+Y H      I
Sbjct: 66  VIHTERKLYLVFEYCDM-DLKKYLDKRPGPLSPNLIKS--IMYQLLRGLAYCHSHR---I 119

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVR 272
           +HRD+   NIL+N +    +ADFG  R
Sbjct: 120 LHRDLKPQNILINRDGVLKLADFGLAR 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 64.9 bits (159), Expect = 9e-12
 Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 40/161 (24%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSAF------------------------ 185
           IG G Y  VYKA     G++VALKK+   E E   F                        
Sbjct: 7   IGEGTYGQVYKARNKKTGELVALKKIR-MENEKEGFPITAIREIKLLQKLRHPNIVRLKE 65

Query: 186 VVYSPQC--MFFIYEYME---RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHD 240
           +V S     ++ ++EYM+    G L      D   ++   ++    +K +   L YLH +
Sbjct: 66  IVTSKGKGSIYMVFEYMDHDLTGLL------DSPEVKFTESQIKCYMKQLLEGLQYLHSN 119

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR 281
               I+HRDI  +NIL+N++    +ADFG  R     +S  
Sbjct: 120 ---GILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSAD 157

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 64.7 bits (158), Expect = 9e-12
 Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 45/202 (22%)

Query: 151 IGTGGYDSVYKAE-LPDGK----VVALKKLHHS-------ETEDSAFVVYSPQC------ 192
           +G+G + +VYK   +P+G+     VA+K L          E  D A+V+ S         
Sbjct: 15  LGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRL 74

Query: 193 --------MFFIYEYMERGSLFCVLRDDDEAIE----LNWTRRMNIVKSVAHALSYL--H 238
                   +  I + M  G L   +R+  + I     LNW  +      +A  +SYL   
Sbjct: 75  LGICLSSQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQ------IAKGMSYLEEK 128

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY--GYIALELV 296
                 +VHRD+++ N+L+ +     + DFG  +LLDVD      + G     ++ALE +
Sbjct: 129 R-----LVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESI 183

Query: 297 YTMVVTEKCVIYSFGVVALEVL 318
              + T K  ++S+GV   E++
Sbjct: 184 LHRIYTHKSDVWSYGVTVWELM 205

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 63.0 bits (154), Expect = 3e-11
 Identities = 56/214 (26%), Positives = 85/214 (39%), Gaps = 55/214 (25%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALKKL-----------HHSETE-------DSAFVV---Y 188
           I  G Y  V+ A+    G + A+K +               TE        S +VV   Y
Sbjct: 1   ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYY 60

Query: 189 SPQC---MFFIYEYMERGSLFCVLR-----DDDEAIELNWTRRMNIVKSVAHALSYLHHD 240
           S Q    ++ + EY+  G L  +L      D+D A           +  +  AL YLH +
Sbjct: 61  SFQGKKNLYLVMEYLPGGDLASLLENVGSLDEDVA--------RIYIAEIVLALEYLHSN 112

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA-----------GTYG 289
               I+HRD+  +NIL++SN    + DFG   L  V    R +             GT  
Sbjct: 113 ---GIIHRDLKPDNILIDSNGHLKLTDFG---LSKVGLVRRQINLNDDEKEDKRIVGTPD 166

Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           YIA E++     ++    +S G +  E L+G  P
Sbjct: 167 YIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPP 200

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 63.1 bits (153), Expect = 3e-11
 Identities = 68/261 (26%), Positives = 107/261 (40%), Gaps = 49/261 (18%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETED-----SAFVVYSPQC------------ 192
           IG G +  VYK  +    +VVA+K +   E ED        +    QC            
Sbjct: 12  IGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSY 71

Query: 193 -----MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVH 247
                ++ I EY+  GS   +L+       L  T    I++ +   L YLH +     +H
Sbjct: 72  LKGTKLWIIMEYLGGGSALDLLKPG----PLEETYIATILREILKGLDYLHSE---RKIH 124

Query: 248 RDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVI 307
           RDI + N+LL+   +  +ADFG    L      R    GT  ++A E++       K  I
Sbjct: 125 RDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADI 184

Query: 308 YSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ----KIIQDIILV 363
           +S G+ A+E+  G  P       +S   P  M +  L  + SPP  +    K  ++ +  
Sbjct: 185 WSLGITAIELAKGEPP-------NSDLHP--MRVLFLIPKNSPPTLEGQYSKPFKEFV-- 233

Query: 364 STIALACLRSKPKSRPTMQRI 384
                ACL   P+ RPT + +
Sbjct: 234 ----EACLNKDPRFRPTAKEL 250

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 62.9 bits (153), Expect = 4e-11
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 167 GKVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNI 226
            ++  LK+L H               +    EY+  GS+  +L ++  A E    R  N 
Sbjct: 55  REIALLKELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALL-NNYGAFEETLVR--NF 111

Query: 227 VKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA- 285
           V+ +   L+YLH      I+HRDI   NIL+++     ++DFG  + L+ +S +      
Sbjct: 112 VRQILKGLNYLH---NRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGA 168

Query: 286 -----GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
                G+  ++A E+V     T K  I+S G + +E+L G HP
Sbjct: 169 RPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHP 211

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 63.1 bits (153), Expect = 4e-11
 Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 53/271 (19%)

Query: 151 IGTGGYDSVYKA-ELPDGK----VVALKKLHHS-------ETEDSAFV---VYSPQ---- 191
           +G+G + +VYK   +PDG+     VA+K L  +       E  D A+V   V SP     
Sbjct: 15  LGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRL 74

Query: 192 ---CMF----FIYEYMERGSLFCVLRDDDEAIE----LNWTRRMNIVKSVAHALSYLHHD 240
              C+      + + M  G L   +R++ + I     LNW  +      +A  +SYL   
Sbjct: 75  LGICLTSTVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQ------IAKGMSYLEE- 127

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY--GYIALELVYT 298
               +VHRD+++ N+L+ S     + DFG  RLLD+D +      G     ++ALE +  
Sbjct: 128 --VRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILH 185

Query: 299 MVVTEKCVIYSFGVVALEVL-MGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII 357
              T +  ++S+GV   E++  G  P +    + +   P ++      +RL  P    I 
Sbjct: 186 RRFTHQSDVWSYGVTVWELMTFGAKPYD---GIPAREIPDLLEKG---ERLPQPPICTID 239

Query: 358 QDIILVSTIALACLRSKPKSRPTMQRISQEL 388
             +I+V      C     + RP  + +  E 
Sbjct: 240 VYMIMVK-----CWMIDSECRPRFRELVDEF 265

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 62.6 bits (152), Expect = 5e-11
 Identities = 59/265 (22%), Positives = 115/265 (43%), Gaps = 46/265 (17%)

Query: 151 IGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV-------------------VYSPQ 191
           +G G +  V+         VA+K L        AF+                   V + +
Sbjct: 14  LGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVTQE 73

Query: 192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDIS 251
            ++ I EYME GSL   L+   E I+L   + +++   +A  ++++      + +HRD+ 
Sbjct: 74  PIYIITEYMENGSLVDFLKTP-EGIKLTINKLIDMAAQIAEGMAFIERK---NYIHRDLR 129

Query: 252 SNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGT---YGYIALELVYTMVVTEKCVIY 308
           + NIL++  L   +ADFG  RL  ++ +  T + G      + A E +     T K  ++
Sbjct: 130 AANILVSETLCCKIADFGLARL--IEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVW 187

Query: 309 SFGVVALEVLMG---THPGELLLSLSSSSGPKIML-IDILYQRLSPPINQKIIQDIILVS 364
           SFG++  E++      +PG         + P+++  ++  Y+   P    + + +++   
Sbjct: 188 SFGILLTEIVTYGRIPYPG--------MTNPEVIQNLERGYRMPRPDNCPEELYELM--- 236

Query: 365 TIALACLRSKPKSRPTMQRISQELE 389
                C + KP+ RPT + +   LE
Sbjct: 237 ---RLCWKEKPEERPTFEYLRSVLE 258

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 59/272 (21%), Positives = 109/272 (40%), Gaps = 54/272 (19%)

Query: 146 HIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF-------------------- 185
            +   IG G +  V   +   G+ VA+K L    T   AF                    
Sbjct: 9   KLGATIGKGEFGDVMLGDY-RGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLG 67

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV     ++ + EYM +GSL   LR    A+ +   +++     V   + YL      + 
Sbjct: 68  VVLQGNPLYIVTEYMAKGSLVDYLRSRGRAV-ITLAQQLGFALDVCEGMEYLE---EKNF 123

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY--GYIALELVYTMVVTE 303
           VHRD+++ N+L++ +L A V+DFG  +      +++   +G     + A E +     + 
Sbjct: 124 VHRDLAARNVLVSEDLVAKVSDFGLAK-----EASQGQDSGKLPVKWTAPEALREKKFST 178

Query: 304 KCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDIL------YQRLSPPINQKII 357
           K  ++SFG++  E+           S      P+I L D++      Y+  +P      +
Sbjct: 179 KSDVWSFGILLWEI----------YSFGRVPYPRIPLKDVVPHVEKGYRMEAPEGCPPEV 228

Query: 358 QDIILVSTIALACLRSKPKSRPTMQRISQELE 389
             ++        C    P  RPT +++ ++L 
Sbjct: 229 YKVM------KDCWELDPAKRPTFKQLREQLA 254

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 62.4 bits (151), Expect = 6e-11
 Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 32/227 (14%)

Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +GSL   L+ +     L   + +++   +A
Sbjct: 55  MKKLRH-EKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKY-LRLPQLVDMAAQIA 112

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD+ + NIL+  NL   VADFG  RL++ D+     Q   +   
Sbjct: 113 SGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIK 168

Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPG----ELLLSLSSSSGPKIMLID 342
           + A E       T K  ++SFG++  E+       +PG    E+L  +            
Sbjct: 169 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERG--------- 219

Query: 343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
             Y+   PP   + + D++        C R +P+ RPT + +   LE
Sbjct: 220 --YRMPCPPECPESLHDLM------CQCWRKEPEERPTFEYLQAFLE 258

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 31/172 (18%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETED-----------------SAFVVY---- 188
           IG G +  V+KA +   G+ VALKK+     E                    +VV     
Sbjct: 8   IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDV 67

Query: 189 --SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIV 246
                    + EYM    L  VLRD++  +     +    ++ +   ++Y+H +    I+
Sbjct: 68  FPHGSGFVLVMEYMPS-DLSEVLRDEERPLPEAQVKS--YMRMLLKGVAYMHAN---GIM 121

Query: 247 HRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR-TLQAGTYGYIALELVY 297
           HRD+   N+L++++    +ADFG  RL   +     + Q  T  Y A EL+Y
Sbjct: 122 HRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLY 173

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 61.8 bits (150), Expect = 9e-11
 Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 26/211 (12%)

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDD---EAIELNWTRRMNIVKSVAHALSYLHHDCT 242
           VV   + +  + EYME GSL   LR  D     I+L     + +++ +A  + YL     
Sbjct: 73  VVTKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQL-----VGMLRGIASGMKYL---SD 124

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD-SSNRTLQAGTYG--YIALELVYTM 299
              VHRD+++ NIL+NSNL   V+DFG  R+L+ D  +  T + G     + A E +   
Sbjct: 125 MGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYR 184

Query: 300 VVTEKCVIYSFGVVALEVL-MGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ 358
             T    ++S+G+V  EV+  G  P         S+   I  I+  Y RL  P++     
Sbjct: 185 KFTSASDVWSYGIVMWEVMSYGERP-----YWEMSNQDVIKAIEEGY-RLPAPMDCPAA- 237

Query: 359 DIILVSTIALACLRSKPKSRPTMQRISQELE 389
               +  + L C +     RP  ++I   L+
Sbjct: 238 ----LHQLMLDCWQKDRNERPKFEQIVSILD 264

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 40/208 (19%)

Query: 145 FHIRYCIGTGGYDSVYKAELPD-GKVVALK---KLHHSETEDSA---------------F 185
           F +   IG G +  V   +  D  K+ A+K   K    E                    F
Sbjct: 2   FELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPF 61

Query: 186 VV---YSPQ---CMFFIYEYMERGSL-FCVLRD---DDEAIELNWTRRMNIVKSVAHALS 235
           +V   YS Q    M+ + + +  G L + + +     +E ++         +  +  AL 
Sbjct: 62  LVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQKVKFSEEQVKF-------WICEIVLALE 114

Query: 236 YLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALEL 295
           YLH   +  I+HRDI  +NILL+      + DF     +    +  T  +GT GY+A E+
Sbjct: 115 YLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVT-PDTLTTSTSGTPGYMAPEV 170

Query: 296 VYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           +     +     +S GV A E L G  P
Sbjct: 171 LCRQGYSVAVDWWSLGVTAYECLRGKRP 198

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 61.2 bits (148), Expect = 1e-10
 Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 11/165 (6%)

Query: 161 KAELPDGKVVALKKLHHSETED--SAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIEL 218
           + EL   +VV ++  HH    D  ++++V     ++ + E++E G+L     D      +
Sbjct: 62  RRELLFNEVVIMRDYHHENVVDMYNSYLVGDE--LWVVMEFLEGGAL----TDIVTHTRM 115

Query: 219 NWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS 278
           N  +   +  SV  ALSYLH      ++HRDI S++ILL S+    ++DFG    +  + 
Sbjct: 116 NEEQIATVCLSVLRALSYLH---NQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEV 172

Query: 279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
             R    GT  ++A E++  +    +  I+S G++ +E++ G  P
Sbjct: 173 PKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPP 217

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 61.2 bits (148), Expect = 2e-10
 Identities = 69/283 (24%), Positives = 123/283 (43%), Gaps = 52/283 (18%)

Query: 138 LIDATEYFHIRYCIGTGGYDSVYKA-ELPDGK----VVALKKLHHS-------ETEDSAF 185
           ++  TE+  I+  +G+G + +VYK   +P+G+     VA+K+L  +       E  D A+
Sbjct: 3   ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 61

Query: 186 VVYSPQ----------CMF----FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           V+ S            C+      I + M  G L   +R+  + I   +   +N    +A
Sbjct: 62  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQIA 119

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++YL       +VHRD+++ N+L+ +     + DFG  +LL  D      + G     
Sbjct: 120 KGMNYLEER---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIK 176

Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHPGELLLSLSSSSGPKIMLIDILY--Q 346
           ++ALE +   + T +  ++S+GV   E++  G+ P + +        P   +  IL   +
Sbjct: 177 WMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI--------PASEISSILEKGE 228

Query: 347 RL-SPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
           RL  PPI        I V  I + C      SRP  + +  E 
Sbjct: 229 RLPQPPICT------IDVYMIMVKCWMIDADSRPKFRELIIEF 265

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 33/228 (14%)

Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H +      V    + ++ + EYM +GSL   L+   E  +L   + +++   +A
Sbjct: 55  MKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSG-EGKKLRLPQLVDMAAQIA 113

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI 291
             ++YL      + +HRD+++ NIL+  NL   +ADFG  RL++ D    T + G    I
Sbjct: 114 EGMAYLESR---NYIHRDLAARNILVGENLVCKIADFGLARLIEDDEY--TAREGAKFPI 168

Query: 292 ---ALELVYTMVVTEKCVIYSFGVVALEVLM-------GTHPGELLLSLSSSSGPKIMLI 341
              A E       T K  ++SFG++  E++        G    E+L  +           
Sbjct: 169 KWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQVERG-------- 220

Query: 342 DILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              Y+   PP   + + D++      L C    P+ RPT + +   LE
Sbjct: 221 ---YRMPRPPNCPEELYDLM------LQCWDKDPEERPTFEYLQSFLE 259

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 25/224 (11%)

Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H +      V    + ++ + E M+ GSL   L+       L   + +++   VA
Sbjct: 55  MKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGR-ALKLPQLIDMAAQVA 113

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-RTLQAGTYGY 290
             ++YL      + +HRD+++ N+L+  N    VADFG  R++  D    R        +
Sbjct: 114 SGMAYLE---AQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKW 170

Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMGTH-----PGELLLSLSSSSGPKIMLIDILY 345
            A E       + K  ++SFG++  E++  T+     PG        ++   +  +D  Y
Sbjct: 171 TAPEAALYNRFSIKSDVWSFGILLTEIV--TYGRMPYPG-------MTNAEVLQQVDQGY 221

Query: 346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           +   PP   K + DI+      L C +  P  RPT + +  +LE
Sbjct: 222 RMPCPPGCPKELYDIM------LDCWKEDPDDRPTFETLQWKLE 259

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 60.0 bits (145), Expect = 3e-10
 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 30/226 (13%)

Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H +     + V S + ++ + EYM +GSL   L+D +    L     +++   VA
Sbjct: 55  MKKLRHDKLV-QLYAVVSEEPIYIVTEYMSKGSLLDFLKDGE-GRALKLPNLVDMAAQVA 112

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + +HRD+ S NIL+   L   +ADFG  RL++ D+     Q   +   
Sbjct: 113 AGMAYIER---MNYIHRDLRSANILVGDGLVCKIADFGLARLIE-DNEYTARQGAKFPIK 168

Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ--- 346
           + A E       T K  ++SFG++  E          L++      P +   ++L Q   
Sbjct: 169 WTAPEAALYGRFTIKSDVWSFGILLTE----------LVTKGRVPYPGMNNREVLEQVER 218

Query: 347 --RLSPPINQKIIQDI-ILVSTIALACLRSKPKSRPTMQRISQELE 389
             R+  P      QD  I +  + L C +  P+ RPT + +   LE
Sbjct: 219 GYRMPCP------QDCPISLHELMLQCWKKDPEERPTFEYLQSFLE 258

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 68/279 (24%), Positives = 105/279 (37%), Gaps = 65/279 (23%)

Query: 145 FHIRYCIGTGGYDSVYKAE-LPDGKVVALKK-----LHHSETEDS--------------- 183
           F +   +G G Y SVYK + L D +  ALK+     +   E ED+               
Sbjct: 2   FKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNI 61

Query: 184 -----AFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAI-----ELNWTRRMNIVKSVAHA 233
                AF+  +  C+  + EY   G L   +    +       +  W     I   +   
Sbjct: 62  ISYKEAFLDGNKLCI--VMEYAPFGDLSKAISKRKKKRKLIPEQEIW----RIFIQLLRG 115

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIAL 293
           L  LH      I+HRD+ S NILL +N    + D G  ++L  + +    Q GT  Y+A 
Sbjct: 116 LQALHEQ---KILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKT--QIGTPHYMAP 170

Query: 294 ELVYTMVVTEKCVIYSFGVVALEVLMGTHP------GELLLSLSSSSGPKIMLIDILYQR 347
           E+      + K  I+S G +  E+     P       +L   +     P I         
Sbjct: 171 EVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQRGKYPPI--------- 221

Query: 348 LSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQ 386
             PPI  + +Q+ I       + L+ KPK RP   +I  
Sbjct: 222 --PPIYSQDLQNFI------RSMLQVKPKLRPNCDKILA 252

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 59.9 bits (145), Expect = 5e-10
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 35/198 (17%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFVVYSPQCM---------------- 193
           IG G   +VY A ++  G+ VA+K+++  +      ++     M                
Sbjct: 27  IGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYL 86

Query: 194 -----FFIYEYMERGSLFCVLRD---DDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
                + + EY+  GSL  V+ +   D+  I         + +    AL +LH +    +
Sbjct: 87  VGDELWVVMEYLAGGSLTDVVTETCMDEGQIAA-------VCRECLQALEFLHSN---QV 136

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKC 305
           +HRDI S+NILL  +    + DFG    +  + S R+   GT  ++A E+V       K 
Sbjct: 137 IHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKV 196

Query: 306 VIYSFGVVALEVLMGTHP 323
            I+S G++A+E++ G  P
Sbjct: 197 DIWSLGIMAIEMVEGEPP 214

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 19/207 (9%)

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV +   M  + E    GSL   LR D        +   +    +A+ + YL    +   
Sbjct: 64  VVLTHPLMM-VTELAPLGSLLDRLRKDALGH-FLISTLCDYAVQIANGMRYLE---SKRF 118

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGT---YGYIALELVYTMVVT 302
           +HRD+++ NILL S+ +  + DFG +R L  +  +  ++      + + A E + T   +
Sbjct: 119 IHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTFS 178

Query: 303 EKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIM-LIDILYQRLSPPINQKIIQDII 361
               ++ FGV   E  M T+  E    L   SG +I+  ID   +RL  P  +   QDI 
Sbjct: 179 HASDVWMFGVTLWE--MFTYGEEPWAGL---SGSQILKKIDKEGERLERP--EACPQDIY 231

Query: 362 LVSTIALACLRSKPKSRPTMQRISQEL 388
               + L C    P  RPT   + + L
Sbjct: 232 ---NVMLQCWAHNPADRPTFAALREFL 255

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 59.1 bits (143), Expect = 7e-10
 Identities = 47/199 (23%), Positives = 83/199 (41%), Gaps = 42/199 (21%)

Query: 198 EYMERGSLFCVLRDD---DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNN 254
           E+M  GS+  +L       EA+ +N+T +      +   LSYLH +    I+HRD+   N
Sbjct: 83  EWMAGGSVSHLLSKYGAFKEAVIINYTEQ------LLRGLSYLHEN---QIIHRDVKGAN 133

Query: 255 ILLNSNLEAF-VADFGTVRLLDVDSSNR-TLQA---GTYGYIALELVYTMVVTEKCVIYS 309
           +L++S  +   +ADFG    L    +     Q    GT  ++A E++        C ++S
Sbjct: 134 LLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWS 193

Query: 310 FGVVALEVLMGTHPG---------ELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI 360
            G V +E+     P           L+  ++S++               P I + +    
Sbjct: 194 VGCVIIEMATAKPPWNAEKHSNHLALIFKIASATTA-------------PSIPEHLSPG- 239

Query: 361 ILVSTIALACLRSKPKSRP 379
             +  + L CL  +P+ RP
Sbjct: 240 --LRDVTLRCLELQPEDRP 256

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 59.3 bits (143), Expect = 7e-10
 Identities = 68/269 (25%), Positives = 107/269 (39%), Gaps = 43/269 (15%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETED-----SAFVVYSPQC- 192
           D  E F     IG G +  V+K  +    +VVA+K +   E ED        +    QC 
Sbjct: 1   DPEELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCD 60

Query: 193 ----------------MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSY 236
                           ++ I EY+  GS   +LR    A   +  +   ++K +   L Y
Sbjct: 61  SPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLR----AGPFDEFQIATMLKEILKGLDY 116

Query: 237 LHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELV 296
           LH +     +HRDI + N+LL+   +  +ADFG    L      R    GT  ++A E++
Sbjct: 117 LHSE---KKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVI 173

Query: 297 YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI 356
                  K  I+S G+ A+E+  G  P       +S   P  M +  L  + +PP    +
Sbjct: 174 QQSAYDSKADIWSLGITAIELAKGEPP-------NSDMHP--MRVLFLIPKNNPP---TL 221

Query: 357 IQDIIL-VSTIALACLRSKPKSRPTMQRI 384
             +          ACL   P  RPT + +
Sbjct: 222 TGEFSKPFKEFIDACLNKDPSFRPTAKEL 250

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 59.3 bits (143), Expect = 7e-10
 Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 33/197 (16%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFVVYSPQCM---------------- 193
           IG G   +VY A ++  G+ VA+K+++  +      ++     M                
Sbjct: 27  IGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 86

Query: 194 -----FFIYEYMERGSLFCVLRDD--DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIV 246
                + + EY+  GSL  V+ +   DE       +   + +    AL +LH +    ++
Sbjct: 87  VGDELWVVMEYLAGGSLTDVVTETCMDEG------QIAAVCRECLQALDFLHSN---QVI 137

Query: 247 HRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCV 306
           HRDI S+NILL  +    + DFG    +  + S R+   GT  ++A E+V       K  
Sbjct: 138 HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVD 197

Query: 307 IYSFGVVALEVLMGTHP 323
           I+S G++A+E++ G  P
Sbjct: 198 IWSLGIMAIEMVEGEPP 214

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 59.0 bits (143), Expect = 7e-10
 Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 19/167 (11%)

Query: 163 ELPDGKVVALKKLHHS---ETEDSAFVVYSPQCMFFIYEYMERGSLFCVL---RDDDEAI 216
           EL   +VV ++   H    E   S  V      ++ + E++E G+L  ++   R ++E I
Sbjct: 61  ELLFNEVVIMRDYQHPNIVEMYSSYLV---GDELWVVMEFLEGGALTDIVTHTRMNEEQI 117

Query: 217 ELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV 276
                    +  +V  ALS+LH      ++HRDI S++ILL S+    ++DFG    +  
Sbjct: 118 A-------TVCLAVLKALSFLH---AQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSK 167

Query: 277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           +   R    GT  ++A E++  +    +  I+S G++ +E++ G  P
Sbjct: 168 EVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPP 214

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 58.9 bits (142), Expect = 8e-10
 Identities = 57/262 (21%), Positives = 116/262 (44%), Gaps = 40/262 (15%)

Query: 151 IGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV-------------------VYSPQ 191
           +G G +  V+ A       VA+K +        AF+                   V + +
Sbjct: 14  LGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTKE 73

Query: 192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDIS 251
            ++ I E+M +GSL   L+ D E  +    + ++    +A  ++++      + +HRD+ 
Sbjct: 74  PIYIITEFMAKGSLLDFLKSD-EGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLR 129

Query: 252 SNNILLNSNLEAFVADFGTVRLL-DVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSF 310
           + NIL++++L   +ADFG  R++ D + + R        + A E +     T K  ++SF
Sbjct: 130 AANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSF 189

Query: 311 GVVALEVLM---GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIA 367
           G++ +E++      +PG         S P++  I  L +    P  +   +++     I 
Sbjct: 190 GILLMEIVTYGRIPYPG--------MSNPEV--IRALERGYRMPRPENCPEELY---NIM 236

Query: 368 LACLRSKPKSRPTMQRISQELE 389
           + C +++P+ RPT + I   L+
Sbjct: 237 MRCWKNRPEERPTFEYIQSVLD 258

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 59.2 bits (143), Expect = 8e-10
 Identities = 67/277 (24%), Positives = 118/277 (42%), Gaps = 43/277 (15%)

Query: 123 VFSVWNYDGKIL-YENLIDATEYFHIRYCIGTGGYDSVYK-AELPDGKVVALKKLH---- 176
           ++ ++ Y+  +L  E+L D T+ + I   IG G Y  VYK     DG + A+K L     
Sbjct: 1   LYGLFPYNSSMLGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISD 60

Query: 177 -----HSETEDSAFVVYSPQC-----MFFIYEYMERGSLFCVLR-----DDDEAIE--LN 219
                 +E      +   P       MF+  + +  G L+ VL         E ++  L 
Sbjct: 61  VDEEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLI 120

Query: 220 WTRRMN------IVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL 273
             +R++      I+      L +LH++    I+HRD+  NNILL +     + DFG    
Sbjct: 121 CGQRLDEAMISYILYGALLGLQHLHNN---RIIHRDVKGNNILLTTEGGVKLVDFGVSAQ 177

Query: 274 LDVDSSNRTLQAGTYGYIALELV-----YTMVVTEKCVIYSFGVVALEV------LMGTH 322
           L      R    GT  ++A E++     Y      +C ++S G+ A+E+      L   H
Sbjct: 178 LTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMH 237

Query: 323 PGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD 359
           P + L  +  +  P ++  +   +  +  I+Q +I+D
Sbjct: 238 PVKTLFKIPRNPPPTLLHPEKWCRSFNHFISQCLIKD 274

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 59.0 bits (142), Expect = 1e-09
 Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 11/133 (8%)

Query: 193 MFFIYEYMERGSLFCVLRDD--DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDI 250
           +F + EY+  GSL  V+ +   DEA      +   + +    AL +LH +    ++HRDI
Sbjct: 91  LFVVMEYLAGGSLTDVVTETCMDEA------QIAAVCRECLQALEFLHAN---QVIHRDI 141

Query: 251 SSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSF 310
            S+N+LL  +    + DFG    +  + S R+   GT  ++A E+V       K  I+S 
Sbjct: 142 KSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL 201

Query: 311 GVVALEVLMGTHP 323
           G++A+E++ G  P
Sbjct: 202 GIMAIEMVEGEPP 214

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 58/211 (27%), Positives = 82/211 (38%), Gaps = 51/211 (24%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLH--------HSETEDSAFV--------------- 186
           IG G +  VY A  L  G+++A+K++           E  D   V               
Sbjct: 8   IGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGV 67

Query: 187 -VYSPQCMFFIYEYMERGSLFCVL---RDDDEAIELNWTRRMNIVKSVAHALSYLHHDCT 242
            V+  +   F+ EY   G+L  +L   R  DE +     R       +   L+YLH   +
Sbjct: 68  EVHREKVYIFM-EYCSGGTLEELLEHGRILDEHV----IRVY--TLQLLEGLAYLH---S 117

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ-------AGTYGYIALEL 295
             IVHRDI   NI L+ N    + DFG    L    +N T         AGT  Y+A E+
Sbjct: 118 HGIVHRDIKPANIFLDHNGVIKLGDFGCAVKL---KNNTTTMGEEVQSLAGTPAYMAPEV 174

Query: 296 VYTMVVTEK---CVIYSFGVVALEVLMGTHP 323
           +             I+S G V LE+  G  P
Sbjct: 175 ITGGKGKGHGRAADIWSLGCVVLEMATGKRP 205

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 40/202 (19%)

Query: 151 IGTGGYDSVYKAEL-PDGKVVALKKL--HH-----------SETE-----DSAFVV---- 187
           +G GG+  V   ++    +  ALK +   H           SE E     +  F+V    
Sbjct: 1   LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYR 60

Query: 188 --YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
                + ++ + EY   G L+ +LRD    +   +T R   +  V  A  YLH+     I
Sbjct: 61  TFKDKKYIYMLMEYCLGGELWTILRD--RGLFDEYTARF-YIACVVLAFEYLHNR---GI 114

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELV----YTMVV 301
           ++RD+   N+LL+SN    + DFG  + L       T   GT  Y+A E++    Y   V
Sbjct: 115 IYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTF-CGTPEYVAPEIILNKGYDFSV 173

Query: 302 TEKCVIYSFGVVALEVLMGTHP 323
                 +S G++  E+L G  P
Sbjct: 174 D----YWSLGILLYELLTGRPP 191

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 58.5 bits (141), Expect = 1e-09
 Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 7/131 (5%)

Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISS 252
           ++ + E+++ G+L  ++        LN  +   + +SV  AL YLH   +  ++HRDI S
Sbjct: 93  LWVLMEFLQGGALTDIVSQ----TRLNEEQIATVCESVLQALCYLH---SQGVIHRDIKS 145

Query: 253 NNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGV 312
           ++ILL  +    ++DFG    +  D   R    GT  ++A E++       +  I+S G+
Sbjct: 146 DSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGI 205

Query: 313 VALEVLMGTHP 323
           + +E++ G  P
Sbjct: 206 MVIEMVDGEPP 216

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 54/207 (26%), Positives = 86/207 (41%), Gaps = 38/207 (18%)

Query: 192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL---HHDCTPSIVHR 248
           CM    E+M+ GSL  + +   +   +       I  +V   L+YL   H      I+HR
Sbjct: 81  CM----EFMDCGSLDRIYK---KGGPIPVEILGKIAVAVVEGLTYLYNVHR-----IMHR 128

Query: 249 DISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIY 308
           DI  +NIL+NS  +  + DFG    L ++S   T   GT  Y++ E +     T K  ++
Sbjct: 129 DIKPSNILVNSRGQIKLCDFGVSGEL-INSIADTF-VGTSTYMSPERIQGGKYTVKSDVW 186

Query: 309 SFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ-------RLS----PPINQKII 357
           S G+  +E+ +G  P              + ++D+L Q       RL     P   +  +
Sbjct: 187 SLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDLRDFV 246

Query: 358 QDIILVSTIALACLRSKPKSRPTMQRI 384
                      ACL   P  RPT Q++
Sbjct: 247 D----------ACLLKDPTERPTPQQL 263

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 25/202 (12%)

Query: 194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSN 253
           + I E+M  G+L   LR+ +   E+N    + +   ++ A+ YL      + +HRD+++ 
Sbjct: 78  YIITEFMTYGNLLDYLRECNRQ-EVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAAR 133

Query: 254 NILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGT---YGYIALELVYTMVVTEKCVIYSF 310
           N L+  N    VADFG  RL+  D+   T  AG      + A E +     + K  +++F
Sbjct: 134 NCLVGENHLVKVADFGLSRLMTGDTY--TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAF 191

Query: 311 GVVALEVL---MGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIA 367
           GV+  E+    M  +PG   + LS        L++  Y+   P      + +++      
Sbjct: 192 GVLLWEIATYGMSPYPG---IDLSQVYE----LLEKGYRMERPEGCPPKVYELM------ 238

Query: 368 LACLRSKPKSRPTMQRISQELE 389
            AC +  P  RP+   I Q  E
Sbjct: 239 RACWQWNPSDRPSFAEIHQAFE 260

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 67/279 (24%), Positives = 115/279 (41%), Gaps = 76/279 (27%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLH--HSE--------------TEDSAFVVYSPQC- 192
           IG+G   +VYK    P G++ ALK ++  H +                +   VV   +C 
Sbjct: 82  IGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVV---KCH 138

Query: 193 -MF-------FIYEYMERGSLFCVLRDDDEAIELNWTRRM-NIVKSVAHALSYLHHDCTP 243
            MF        + E+M+ GSL        E   +   + + ++ + +   ++YLH     
Sbjct: 139 DMFDHNGEIQVLLEFMDGGSL--------EGTHIADEQFLADVARQILSGIAYLHRR--- 187

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLD--VDSSNRTLQAGTYGYIALELVYTMV- 300
            IVHRDI  +N+L+NS     +ADFG  R+L   +D  N ++  GT  Y++ E + T + 
Sbjct: 188 HIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSV--GTIAYMSPERINTDLN 245

Query: 301 --VTEKCV--IYSFGVVALEVLMGTHP---------GELLLSLSSSSGPKIMLIDILYQR 347
               +     I+S GV  LE  +G  P           L+ ++  S  P+          
Sbjct: 246 HGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQPPE---------- 295

Query: 348 LSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQ 386
            +P    +  +  I        CL+ +P  R +  ++ Q
Sbjct: 296 -APATASREFRHFISC------CLQREPAKRWSAMQLLQ 327

Length = 353

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 57.8 bits (139), Expect = 2e-09
 Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 33/197 (16%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFVVYSPQCM---------------- 193
           IG G   +VY A ++  G+ VA+++++  +      ++     M                
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 87

Query: 194 -----FFIYEYMERGSLFCVLRDD--DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIV 246
                + + EY+  GSL  V+ +   DE       +   + +    AL +LH +    ++
Sbjct: 88  VGDELWVVMEYLAGGSLTDVVTETCMDEG------QIAAVCRECLQALEFLHSN---QVI 138

Query: 247 HRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCV 306
           HRDI S+NILL  +    + DFG    +  + S R+   GT  ++A E+V       K  
Sbjct: 139 HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVD 198

Query: 307 IYSFGVVALEVLMGTHP 323
           I+S G++A+E++ G  P
Sbjct: 199 IWSLGIMAIEMIEGEPP 215

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 17/166 (10%)

Query: 222 RRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR 281
           R  NI   +  AL YLH +    IVHRD++ NNI+L  + +  + DFG  +      S  
Sbjct: 114 RIWNIFVQMVLALRYLHKE--KRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQ-PESKL 170

Query: 282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP--GELLLSLSSSSGPKIM 339
           T   GT  Y   E+V      EK  +++FG +  ++     P     +LSL++       
Sbjct: 171 TSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTNMLSLATK------ 224

Query: 340 LIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRIS 385
           +++ +Y+    P+ + +  +   V+ +  +CL    ++RP + ++S
Sbjct: 225 IVEAVYE----PLPEGMYSE--DVTDVITSCLTPDAEARPDIIQVS 264

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 57.4 bits (138), Expect = 3e-09
 Identities = 52/223 (23%), Positives = 103/223 (46%), Gaps = 24/223 (10%)

Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H +     + V S + ++ + E+M +GSL   L++ D    L   + +++   +A
Sbjct: 55  MKKLRHDKLV-PLYAVVSEEPIYIVTEFMGKGSLLDFLKEGD-GKYLKLPQLVDMAAQIA 112

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + +HRD+ + NIL+  NL   +ADFG  RL++ D+     Q   +   
Sbjct: 113 DGMAYIER---MNYIHRDLRAANILVGDNLVCKIADFGLARLIE-DNEYTARQGAKFPIK 168

Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGELLLSLSSSSGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E++      +PG +   +       +  ++  Y+
Sbjct: 169 WTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREV-------LEQVERGYR 221

Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              P    + + +++ +      C +  P  RPT + I   LE
Sbjct: 222 MPCPQGCPESLHELMKL------CWKKDPDERPTFEYIQSFLE 258

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 56.5 bits (136), Expect = 4e-09
 Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 32/226 (14%)

Query: 171 ALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
            + KLHH        V+     ++ + E M +G+L   LR    A+ ++  + +     V
Sbjct: 52  VMTKLHHKNLVRLLGVILH-NGLYIVMELMSKGNLVNFLRTRGRAL-VSVIQLLQFSLDV 109

Query: 231 AHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL--LDVDSSNRTLQAGTY 288
           A  + YL    +  +VHRD+++ NIL++ +  A V+DFG  R+  + VD+S   ++    
Sbjct: 110 AEGMEYLE---SKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVK---- 162

Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ-- 346
            + A E +     + K  ++S+GV+  EV           S   +  PK+ L ++     
Sbjct: 163 -WTAPEALKHKKFSSKSDVWSYGVLLWEV----------FSYGRAPYPKMSLKEVKECVE 211

Query: 347 ---RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              R+ PP  +    D   V  +  +C  ++PK RP+  ++ ++LE
Sbjct: 212 KGYRMEPP--EGCPAD---VYVLMTSCWETEPKKRPSFHKLREKLE 252

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 56.6 bits (136), Expect = 5e-09
 Identities = 57/241 (23%), Positives = 96/241 (39%), Gaps = 45/241 (18%)

Query: 138 LIDATEYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKL--------------------- 175
           L D    F +   +G G Y  VYK   +  G++ A+K +                     
Sbjct: 1   LRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYS 60

Query: 176 HHSE--TEDSAFVVYSPQCM----FFIYEYMERGSLFCVLRDDD-EAIELNWTRRMNIVK 228
           HH    T   AF+  +P  M    + + E+   GS+  ++++     ++  W     I +
Sbjct: 61  HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWI--AYICR 118

Query: 229 SVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY 288
            +   LS+LH      ++HRDI   N+LL  N E  + DFG    LD     R    GT 
Sbjct: 119 EILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTP 175

Query: 289 GYIALELVYT-----MVVTEKCVIYSFGVVALEVLMGT------HPGELLLSLSSSSGPK 337
            ++A E++            K  ++S G+ A+E+  G       HP   L  +  +  P+
Sbjct: 176 YWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPR 235

Query: 338 I 338
           +
Sbjct: 236 L 236

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 56.7 bits (137), Expect = 5e-09
 Identities = 59/220 (26%), Positives = 84/220 (38%), Gaps = 46/220 (20%)

Query: 198 EYMERGSLFCVLRDDDEAIELNWTRRMN---------IVKSVAHALSYLHHDCTPSIVHR 248
           EY E GSL        ++I     +R           I +SV   LSYLH   +  I+HR
Sbjct: 81  EYCEGGSL--------DSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLH---SRKIIHR 129

Query: 249 DISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIY 308
           DI  +NILL    +  + DFG    L V+S   T   GT  Y+A E +     +    ++
Sbjct: 130 DIKPSNILLTRKGQVKLCDFGVSGEL-VNSLAGTF-TGTSFYMAPERIQGKPYSITSDVW 187

Query: 309 SFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDIL--YQRLSPPINQ----------KI 356
           S G+  LEV     P            P +  I++L     +  P  +          + 
Sbjct: 188 SLGLTLLEVAQNRFP------FPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEE 241

Query: 357 IQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKK 396
            +D I        CL   P  RPT   + +    K  MKK
Sbjct: 242 FKDFIKQ------CLEKDPTRRPTPWDMLEHPWIKAQMKK 275

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 52/199 (26%), Positives = 77/199 (38%), Gaps = 59/199 (29%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALKKL---HHSETED----SAF----------------- 185
           +G G Y  VYKA     G++VA+KK+      E +D    +A                  
Sbjct: 8   LGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGL 67

Query: 186 --VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH----------A 233
             V      +  ++E+ME   L  V++D             +IV + A            
Sbjct: 68  LDVFGHKSNINLVFEFME-TDLEKVIKD------------KSIVLTPADIKSYMLMTLRG 114

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIAL 293
           L YLH +    I+HRD+  NN+L+ S+    +ADFG  R     +   T Q  T  Y A 
Sbjct: 115 LEYLHSN---WILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAP 171

Query: 294 ELVYTMVVTEKCVIYSFGV 312
           EL++          Y  GV
Sbjct: 172 ELLF------GARHYGVGV 184

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 32/201 (15%)

Query: 198 EYMERGSLFCVLRDD---DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNN 254
           EY+  GS+   LR     +E +   +T +      V   L+YLH   +  I+HRD+ ++N
Sbjct: 88  EYVPGGSIGSCLRTYGRFEEQLVRFFTEQ------VLEGLAYLH---SKGILHRDLKADN 138

Query: 255 ILLNSNLEAFVADFGTVRLLD---VDSSNRTLQAGTYGYIALELV--YTMVVTEKCVIYS 309
           +L++++    ++DFG  +  D    +  N ++Q G+  ++A E++  Y+   + K  I+S
Sbjct: 139 LLVDADGICKISDFGISKKSDDIYDNDQNMSMQ-GSVFWMAPEVIHSYSQGYSAKVDIWS 197

Query: 310 FGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIAL- 368
            G V LE+  G  P     ++++       +  +  +R +PPI   +      +S +AL 
Sbjct: 198 LGCVVLEMFAGRRPWSDEEAIAA-------MFKLGNKRSAPPIPPDVSM---NLSPVALD 247

Query: 369 ---ACLRSKPKSRPTMQRISQ 386
              AC    P +RPT + + Q
Sbjct: 248 FLNACFTINPDNRPTARELLQ 268

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 63/250 (25%), Positives = 101/250 (40%), Gaps = 49/250 (19%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKK-----------------------LHHSETEDSAFV 186
           IG G Y  VY+A +   G++VALKK                       L H    +   V
Sbjct: 15  IGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEV 74

Query: 187 VYSPQ--CMFFIYEYMER--GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCT 242
           V       +F + EY E+   SL      D+     + ++   ++  +   L YLH +  
Sbjct: 75  VVGKHLDSIFLVMEYCEQDLASLL-----DNMPTPFSESQVKCLMLQLLRGLQYLHENF- 128

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVT 302
             I+HRD+  +N+LL       +ADFG  R   + +   T +  T  Y A EL+      
Sbjct: 129 --IIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTY 186

Query: 303 EKCV-IYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI---IQ 358
              + +++ G +  E+L      + LL   S    +I  +D++ Q L  P N+ I     
Sbjct: 187 TTAIDMWAVGCILAELLA----HKPLLPGKS----EIEQLDLIIQLLGTP-NESIWPGFS 237

Query: 359 DIILVSTIAL 368
           D+ LV    L
Sbjct: 238 DLPLVGKFTL 247

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 56.2 bits (135), Expect = 7e-09
 Identities = 57/241 (23%), Positives = 99/241 (41%), Gaps = 45/241 (18%)

Query: 138 LIDATEYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDS------------- 183
           L D    F +   +G G Y  VYK   +  G++ A+K +  +E E+              
Sbjct: 11  LRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYS 70

Query: 184 ----------AFVVYSP----QCMFFIYEYMERGSLFCVLRDDD-EAIELNWTRRMNIVK 228
                     AF+  SP      ++ + E+   GS+  ++++    A++ +W     I +
Sbjct: 71  HHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWI--AYICR 128

Query: 229 SVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY 288
            +   L++LH      ++HRDI   N+LL  N E  + DFG    LD     R    GT 
Sbjct: 129 EILRGLAHLH---AHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTP 185

Query: 289 GYIALELVYT-----MVVTEKCVIYSFGVVALEVLMGT------HPGELLLSLSSSSGPK 337
            ++A E++            +  I+S G+ A+E+  G       HP   L  +  +  PK
Sbjct: 186 YWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPK 245

Query: 338 I 338
           +
Sbjct: 246 L 246

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 66/288 (22%), Positives = 116/288 (40%), Gaps = 67/288 (23%)

Query: 151 IGTGGYDSVYKAEL-----PDGKV-VALKKLHHSETE-DSAFVVYSPQCM---------- 193
           +G G +  V KAE      P+    VA+K L    TE D + +V   + M          
Sbjct: 20  LGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNII 79

Query: 194 ------------FFIYEYMERGSLFCVLR-----------DDDEAIELNWTRR--MNIVK 228
                       + + EY   G+L   LR           DD    E   T++  ++   
Sbjct: 80  NLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAY 139

Query: 229 SVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR-LLDVDSSNRTLQAG- 286
            VA  + +L    +   +HRD+++ N+L+  +    +ADFG  R +  +D   +T     
Sbjct: 140 QVARGMEFL---ASKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRL 196

Query: 287 TYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKI---MLIDI 343
              ++A E ++  V T +  ++SFGV+  E+           +L  S  P I    L  +
Sbjct: 197 PVKWMAPEALFDRVYTHQSDVWSFGVLLWEI----------FTLGGSPYPGIPVEELFKL 246

Query: 344 LYQ--RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           L +  R+  P N    Q+   +  +   C    P  RPT +++ ++L+
Sbjct: 247 LKEGYRMEKPQNCT--QE---LYHLMRDCWHEVPSQRPTFKQLVEDLD 289

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 44/185 (23%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKK-LHHSETED------------------------SA 184
           +G G +  VYKA ++  G+VVALKK L H+E +                           
Sbjct: 16  LGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDM 75

Query: 185 FVVYSPQ------CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
            V    +       ++ +  YM+   L  +L  ++ +++L  ++    +  +   ++YLH
Sbjct: 76  AVERPDKSKRKRGSVYMVTPYMDH-DLSGLL--ENPSVKLTESQIKCYMLQLLEGINYLH 132

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
            +    I+HRDI + NIL+++     +ADFG  R  D    N        G       YT
Sbjct: 133 EN---HILHRDIKAANILIDNQGILKIADFGLARPYDGPPPN-----PKGGGGGGTRKYT 184

Query: 299 -MVVT 302
            +VVT
Sbjct: 185 NLVVT 189

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 39/205 (19%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF-----------------------V 186
           +G G Y SVYK    P G  +A+K++   E ++S F                        
Sbjct: 9   LGKGNYGSVYKVLHRPTGVTMAMKEIR-LELDESKFNQIIMELDILHKAVSPYIVDFYGA 67

Query: 187 VYSPQCMFFIYEYMERGSLFCVL--RDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS 244
            +    ++   EYM+ GSL  +       E I  +  RR  I  +V   L +L  +   +
Sbjct: 68  FFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRR--ITYAVVKGLKFLKEE--HN 123

Query: 245 IVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEK 304
           I+HRD+   N+L+N N +  + DFG    L V S  +T   G   Y+A E + +    + 
Sbjct: 124 IIHRDVKPTNVLVNGNGQVKLCDFGVSGNL-VASLAKT-NIGCQSYMAPERIKSGGPNQN 181

Query: 305 CV------IYSFGVVALEVLMGTHP 323
                   ++S G+  LE+ +G +P
Sbjct: 182 PTYTVQSDVWSLGLSILEMALGRYP 206

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 15/106 (14%)

Query: 226 IVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA 285
           I  S+  AL YLH     S++HRD+  +N+L+N N +  + DFG    L VDS  +T+ A
Sbjct: 108 IAVSIVKALEYLHS--KLSVIHRDVKPSNVLINRNGQVKLCDFGISGYL-VDSVAKTIDA 164

Query: 286 GTYGYIALELV--------YTMVVTEKCVIYSFGVVALEVLMGTHP 323
           G   Y+A E +        Y +    K  ++S G+  +E+  G  P
Sbjct: 165 GCKPYMAPERINPELNQKGYDV----KSDVWSLGITMIELATGRFP 206

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 53.9 bits (129), Expect = 4e-08
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 7/163 (4%)

Query: 161 KAELPDGKVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNW 220
           + EL   +VV ++   H    +          ++ + E++E G+L     D      +N 
Sbjct: 60  RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGAL----TDIVTHTRMNE 115

Query: 221 TRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN 280
            +   +  +V  ALS LH      ++HRDI S++ILL  +    ++DFG    +  +   
Sbjct: 116 EQIAAVCLAVLKALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR 172

Query: 281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           R    GT  ++A EL+  +    +  I+S G++ +E++ G  P
Sbjct: 173 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPP 215

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 53.5 bits (128), Expect = 4e-08
 Identities = 38/148 (25%), Positives = 75/148 (50%), Gaps = 5/148 (3%)

Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +K L H +      VV   + ++ I EYM +GSL   L+ D E  ++   + ++    +A
Sbjct: 55  MKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSD-EGGKVLLPKLIDFSAQIA 113

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL-DVDSSNRTLQAGTYGY 290
             ++Y+      + +HRD+ + N+L++ +L   +ADFG  R++ D + + R        +
Sbjct: 114 EGMAYIERK---NYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKW 170

Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVL 318
            A E +     T K  ++SFG++  E++
Sbjct: 171 TAPEAINFGSFTIKSDVWSFGILLYEIV 198

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 52.6 bits (126), Expect = 8e-08
 Identities = 47/217 (21%), Positives = 91/217 (41%), Gaps = 26/217 (11%)

Query: 174 KLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHA 233
           KL H +      V    + ++ + EYM  G L   LR+  +  +   ++ + + K V   
Sbjct: 55  KLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQP--SQLLEMCKDVCEG 112

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR-LLDVDSSNRTLQAGTYGYIA 292
           ++YL    +   +HRD+++ N L++      V+DFG  R +LD + ++         +  
Sbjct: 113 MAYLE---SKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSP 169

Query: 293 LELVYTMVVTEKCVIYSFGVVALEVL-MGTHPGELL----LSLSSSSGPKIMLIDILYQR 347
            E++     + K  +++FGV+  EV  +G  P E           S G ++    +  ++
Sbjct: 170 PEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGLRLYRPHLASEK 229

Query: 348 LSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
                          V  I  +C   K + RPT Q++
Sbjct: 230 ---------------VYAIMYSCWHEKAEERPTFQQL 251

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 71/304 (23%), Positives = 127/304 (41%), Gaps = 65/304 (21%)

Query: 151 IGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSAFVVYS---PQ---- 191
           +G+G + +VYK   +P+G+ V    A+K L+ +       E  D A ++ S   P     
Sbjct: 15  LGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRL 74

Query: 192 ---CMF----FIYEYMERGSLFCVLRDDDEAIE----LNWTRRMNIVKSVAHALSYLHHD 240
              C+      + + M  G L   + +  + I     LNW  +      +A  + YL   
Sbjct: 75  LGVCLSPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQ------IAKGMMYLEER 128

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY--GYIALELVYT 298
               +VHRD+++ N+L+ S     + DFG  RLL+ D        G     ++ALE ++ 
Sbjct: 129 ---RLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHY 185

Query: 299 MVVTEKCVIYSFGVVALEVL-MGTHPGELLLSLSSSSGPKIMLIDILY--QRL-SPPINQ 354
              T +  ++S+GV   E++  G  P + +        P   + D+L   +RL  PPI  
Sbjct: 186 RKFTHQSDVWSYGVTIWELMTFGGKPYDGI--------PTREIPDLLEKGERLPQPPICT 237

Query: 355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQELE--GKTPMK----KGLKEISIPEMRN 408
                 I V  + + C      SRP  + ++ E     + P +    +G   + +P   +
Sbjct: 238 ------IDVYMVMVKCWMIDADSRPKFKELAAEFSRMARDPQRYLVIQGDDRMKLPSPND 291

Query: 409 QEMF 412
            + F
Sbjct: 292 SKFF 295

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 69/275 (25%), Positives = 110/275 (40%), Gaps = 50/275 (18%)

Query: 143 EYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSAFV---------VYSPQC 192
           E F +   IG+G Y  VYKA  +  G++ A+K +     ED A V               
Sbjct: 9   EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNI 68

Query: 193 MFFIYEYMERGSL-----FC---VLRDDDEAI-ELNWTRRMNIVKSVAHALSYLHHDCTP 243
           + +   Y+ R  L     FC    L+D       L+ ++   + +     L YLH   + 
Sbjct: 69  VAYFGSYLRRDKLWICMEFCGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLH---SK 125

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTE 303
             +HRDI   NILL  N    +ADFG    +    + R    GT  ++A E+     V  
Sbjct: 126 GKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVA---AVER 182

Query: 304 K------CVIYSFGVVALEV------LMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP 351
           K      C I++ G+ A+E+      +   HP   L  ++ S+          +Q   P 
Sbjct: 183 KGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMTKSN----------FQ--PPK 230

Query: 352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQ 386
           +  K+         + +A L   PK RPT +++ Q
Sbjct: 231 LKDKMKWSNSFHHFVKMA-LTKNPKKRPTAEKLLQ 264

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 12/138 (8%)

Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISS 252
           ++ + EY   G L  +L   ++  + +  +    +  +  A+  +H       VHRDI  
Sbjct: 76  LYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFY--LAELVLAIHSVH---QMGYVHRDIKP 130

Query: 253 NNILLNSNLEAFVADFGTVRLLDVDSS-NRTLQAGTYGYIALELVYTMVVTEK------C 305
            N+L++      +ADFG+   L  +   N  L  GT  YIA E++ TM    K      C
Sbjct: 131 ENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVEC 190

Query: 306 VIYSFGVVALEVLMGTHP 323
             +S GV+A E++ G  P
Sbjct: 191 DWWSLGVIAYEMIYGRSP 208

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 57/205 (27%), Positives = 82/205 (40%), Gaps = 27/205 (13%)

Query: 145 FHIRYCIGTGGYDSVYKAELPDG------KVVALKKLHHSETEDSAFVVY------SPQC 192
           + I   IG G +  +Y A+          K + L K+   E E S   V        P  
Sbjct: 2   YEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNI 61

Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHA----LSY-------LHHDC 241
           + F   + E G LF V+   D     +  +R+N  + V  +    LS+       L H  
Sbjct: 62  VTFFASFQENGRLFIVMEYCDGG---DLMKRINRQRGVLFSEDQILSWFVQISLGLKHIH 118

Query: 242 TPSIVHRDISSNNILLNSN-LEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMV 300
              I+HRDI S NI L+ N + A + DFG  R L+          GT  Y++ E+     
Sbjct: 119 DRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRP 178

Query: 301 VTEKCVIYSFGVVALEVLMGTHPGE 325
              K  I+S G V  E+    HP E
Sbjct: 179 YNNKTDIWSLGCVLYELCTLKHPFE 203

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 14/136 (10%)

Query: 193 MFFIYEYMERGSLFCVLRDDD-----EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVH 247
           ++ + EY + G L   ++        E   L W  +M +       + ++H      ++H
Sbjct: 73  LYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCL------GVQHIHEK---RVLH 123

Query: 248 RDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVI 307
           RDI S NI L  N +  + DFG+ RLL    +      GT  Y+  E+   M    K  I
Sbjct: 124 RDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMPYNNKSDI 183

Query: 308 YSFGVVALEVLMGTHP 323
           +S G +  E+    HP
Sbjct: 184 WSLGCILYELCTLKHP 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 49/202 (24%), Positives = 78/202 (38%), Gaps = 42/202 (20%)

Query: 151 IGTGGYDSVYKAE------------LPDGKVVALKKLHHSETE--------DSAFVV--- 187
           I  G + SVY A+            L    ++A  ++ + + E        +S +V    
Sbjct: 4   ISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLY 63

Query: 188 YSPQC---MFFIYEYMERG---SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC 241
           YS Q    ++ + EY+  G   SL   L    E    +W +    +  V   +  LH   
Sbjct: 64  YSFQSKDYLYLVMEYLNGGDCASLIKTLGGLPE----DWAK--QYIAEVVLGVEDLHQR- 116

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVV 301
              I+HRDI   N+L++      + DFG  R       N+    GT  Y+A E +  +  
Sbjct: 117 --GIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE---NKKF-VGTPDYLAPETILGVGD 170

Query: 302 TEKCVIYSFGVVALEVLMGTHP 323
            +    +S G V  E L G  P
Sbjct: 171 DKMSDWWSLGCVIFEFLFGYPP 192

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 46/203 (22%), Positives = 91/203 (44%), Gaps = 29/203 (14%)

Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISS 252
           ++ + EYM +GSL   LR    ++ L     +     V  A+ YL  +   + VHRD+++
Sbjct: 75  LYIVTEYMAKGSLVDYLRSRGRSV-LGGDCLLKFSLDVCEAMEYLEAN---NFVHRDLAA 130

Query: 253 NNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGV 312
            N+L++ +  A V+DFG  +  +  S+  T +     + A E +     + K  ++SFG+
Sbjct: 131 RNVLVSEDNVAKVSDFGLTK--EASSTQDTGKLPV-KWTAPEALREKKFSTKSDVWSFGI 187

Query: 313 VALEVLMGTHPGELLLSLSSSSGPKIMLIDIL------YQRLSPPINQKIIQDIILVSTI 366
           +  E+           S      P+I L D++      Y+  +P     ++ D++     
Sbjct: 188 LLWEI----------YSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPVVYDVM----- 232

Query: 367 ALACLRSKPKSRPTMQRISQELE 389
              C      +RP+  ++ ++LE
Sbjct: 233 -KQCWHLDAATRPSFLQLREQLE 254

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 11/132 (8%)

Query: 192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDIS 251
           CM    E+M+ GSL  VL+      E    +   I  +V   L+YL       I+HRD+ 
Sbjct: 77  CM----EHMDGGSLDQVLKKAGRIPENILGK---ISIAVLRGLTYLREK--HKIMHRDVK 127

Query: 252 SNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFG 311
            +NIL+NS  E  + DFG    L +DS   +   GT  Y++ E +     T +  I+S G
Sbjct: 128 PSNILVNSRGEIKLCDFGVSGQL-IDSMANSF-VGTRSYMSPERLQGTHYTVQSDIWSLG 185

Query: 312 VVALEVLMGTHP 323
           +  +E+ +G +P
Sbjct: 186 LSLVEMAIGRYP 197

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 18/217 (8%)

Query: 174 KLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHA 233
           KL H +      V    + ++ + E+ME G L   LR     +  +    +++ + V   
Sbjct: 55  KLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDML--LSMCQDVCEG 112

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR-LLDVDSSNRTLQAGTYGYIA 292
           + YL  +   S +HRD+++ N L++S     V+DFG  R +LD + ++ +       +  
Sbjct: 113 MEYLERN---SFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSP 169

Query: 293 LELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPP 351
            E+      + K  ++SFGV+  EV   G  P E       S+   + +I   ++   P 
Sbjct: 170 PEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFE-----KKSNYEVVEMISRGFRLYRPK 224

Query: 352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
           +    + +++       +C   KP+ RPT   + + +
Sbjct: 225 LASMTVYEVM------YSCWHEKPEGRPTFAELLRAI 255

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 55/260 (21%), Positives = 103/260 (39%), Gaps = 38/260 (14%)

Query: 151 IGTGGYDSVYKAELPDGKVVALK--------------------KLHHSETEDSAFVVYSP 190
           IG+G +  V+     + + VA+K                    KL H +      V    
Sbjct: 12  IGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTER 71

Query: 191 QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDI 250
             +  ++E+ME G L   LR             M +   V   ++YL       ++HRD+
Sbjct: 72  SPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCL--DVCEGMAYLESSN---VIHRDL 126

Query: 251 SSNNILLNSNLEAFVADFGTVRL-LDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYS 309
           ++ N L+  N    V+DFG  R  LD   ++ T       + + E+      + K  ++S
Sbjct: 127 AARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWS 186

Query: 310 FGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIAL 368
           FGV+  EV   G  P E     + S+   +  I+  ++   P +  + + +++       
Sbjct: 187 FGVLMWEVFSEGKTPYE-----NRSNSEVVETINAGFRLYKPRLASQSVYELM------Q 235

Query: 369 ACLRSKPKSRPTMQRISQEL 388
            C + +P+ RP+   +  +L
Sbjct: 236 HCWKERPEDRPSFSLLLHQL 255

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 50.8 bits (121), Expect = 4e-07
 Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 30/205 (14%)

Query: 196 IYEYMERGSLFCVL---RDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISS 252
           I  +M+ G L   L   R  D    L     +  +  +A  + YL    + S +HRD+++
Sbjct: 84  ILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYL---SSKSFIHRDLAA 140

Query: 253 NNILLNSNLEAFVADFGTVRLL---DVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYS 309
            N +LN N+   VADFG  + +   D     R  +     +IA+E +   V T K  ++S
Sbjct: 141 RNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPV-KWIAIESLADRVYTTKSDVWS 199

Query: 310 FGVVALEVL---MGTHPGELLLSLSSSSGPKIMLIDILYQ--RLSPPINQKIIQDIILVS 364
           FGV   E+       +PG     + +S      + D L Q  RL  P +      +  + 
Sbjct: 200 FGVTMWEIATRGQTPYPG-----VENSE-----IYDYLRQGNRLKQPPDC-----LDGLY 244

Query: 365 TIALACLRSKPKSRPTMQRISQELE 389
           ++  +C    PK RP+ + +  ELE
Sbjct: 245 SLMSSCWLLNPKDRPSFETLRCELE 269

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase, Kit

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 49/201 (24%), Positives = 92/201 (45%), Gaps = 32/201 (15%)

Query: 199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN 258
           Y+++     +L +D+ A++      ++    VA  +S+L    + + +HRD+++ NILL 
Sbjct: 194 YIDQDVTSEILEEDELALDTE--DLLSFSYQVAKGMSFL---ASKNCIHRDLAARNILLT 248

Query: 259 SNLEAFVADFGTVRLLDVDSSNRTLQAGT---YGYIALELVYTMVVTEKCVIYSFGVVAL 315
                 + DFG  R +  D SN  ++        ++A E ++  V T +  ++S+G++  
Sbjct: 249 HGRITKICDFGLARDIRND-SNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLW 307

Query: 316 EVLMGTHPGELLLSLSSSSGPKI-------MLIDILYQRLSPPINQKIIQDIILVSTIAL 368
           E          + SL SS  P +        +I   Y+ LSP      + DI+       
Sbjct: 308 E----------IFSLGSSPYPGMPVDSKFYKMIKEGYRMLSPECAPSEMYDIM------K 351

Query: 369 ACLRSKPKSRPTMQRISQELE 389
           +C  + P  RPT ++I Q +E
Sbjct: 352 SCWDADPLKRPTFKQIVQLIE 372

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. Kit signaling is involved in major cellular functions including cell survival, proliferation, differentiation, adhesion, and chemotaxis. Mutations in Kit, which result in constitutive ligand-independent activation, are found in human cancers such as gastrointestinal stromal tumor (GIST) and testicular germ cell tumor (TGCT). The aberrant expression of Kit and/or SCF is associated with other tumor types such as systemic mastocytosis and cancers of the breast, neurons, lung, prostate, colon, and rectum. Although the structure of the human Kit catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 375

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 17/161 (10%)

Query: 195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNN 254
            + +    GSL   +R   ++  L+  R +N    +A  + YL       +VHR++++ N
Sbjct: 85  LVTQLSPLGSLLDHVRQHRDS--LDPQRLLNWCVQIAKGMYYLEEHR---MVHRNLAARN 139

Query: 255 ILLNSNLEAFVADFGTVRLLDVDSSNRTLQ--AGTYGYIALELVYTMVVTEKCVIYSFGV 312
           ILL S+    +ADFG   LL  D              ++ALE +     T +  ++S+GV
Sbjct: 140 ILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGV 199

Query: 313 VALEVLM-------GTHPGE---LLLSLSSSSGPKIMLIDI 343
              E++        G  P E   LL      + P+I  ID+
Sbjct: 200 TVWEMMSYGAEPYAGMRPHEVPDLLEKGERLAQPQICTIDV 240

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 51.1 bits (122), Expect = 4e-07
 Identities = 78/305 (25%), Positives = 122/305 (40%), Gaps = 56/305 (18%)

Query: 145 FHIRYCIGTGGYDSVY---KAELPD-GKVVALKKL------------HHSETE------- 181
           F +   +GTG Y  V+   K    D GK+ A+K L             H+ TE       
Sbjct: 2   FELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHV 61

Query: 182 -DSAFVV---YSPQC---MFFIYEYMERGSLFCVL--RDDDEAIELNWTRRMNIVKSVAH 232
             S F+V   Y+ Q    +  I +Y+  G +F  L  RD+    E+ +         +  
Sbjct: 62  RQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQRDNFSEDEVRF-----YSGEIIL 116

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ-AGTYGYI 291
           AL +LH      IV+RDI   NILL+S     + DFG  +    +   RT    GT  Y+
Sbjct: 117 ALEHLH---KLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYM 173

Query: 292 ALELVYTMVVTEKCV-IYSFGVVALEVLMGTHPGELLLSLSSSS--GPKIMLIDILYQRL 348
           A E++       K V  +S G++  E+L G  P  L    ++ S    +I+  D  +   
Sbjct: 174 APEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDPPFPSF 233

Query: 349 SPPINQKIIQDIILVSTIALACLRSKPKSR-PTMQRISQELEGKTPMKKGLKEISIPEMR 407
             P  Q ++  +          LR  PK R     + + E++   P  KGL   ++   +
Sbjct: 234 IGPEAQDLLHKL----------LRKDPKKRLGAGPQGASEIKEH-PFFKGLDWEALALRK 282

Query: 408 NQEMF 412
               F
Sbjct: 283 VNPPF 287

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 50.4 bits (120), Expect = 5e-07
 Identities = 66/269 (24%), Positives = 111/269 (41%), Gaps = 58/269 (21%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFVVYSPQCMFFIYE----------- 198
           +G+G Y  VYKA  L  G++ A+K +     +D + +    Q +F + E           
Sbjct: 17  VGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLI---QQEIFMVKECKHCNIVAYFG 73

Query: 199 -YMERGSLF-CV-------LRDDDEAI-ELNWTRRMNIVKSVAHALSYLHHDCTPSIVHR 248
            Y+ R  L+ C+       L+D       L+  +   + +     L+YLH   +   +HR
Sbjct: 74  SYLSREKLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLH---SKGKMHR 130

Query: 249 DISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEK---- 304
           DI   NILL  N +  +ADFG    +    + R    GT  ++A E+       EK    
Sbjct: 131 DIKGANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPEV----AAVEKNGGY 186

Query: 305 ---CVIYSFGVVALEV------LMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK 355
              C I++ G+ A+E+      +   HP   L  +S S+          +Q   P +  K
Sbjct: 187 NQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMSKSN----------FQ--PPKLKDK 234

Query: 356 IIQDIILVSTIALACLRSKPKSRPTMQRI 384
                   + + ++ L   PK RPT +R+
Sbjct: 235 TKWSSTFHNFVKIS-LTKNPKKRPTAERL 262

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 12/139 (8%)

Query: 190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRD 249
            + ++ + EYM  G L  ++ + D  I   W R       V  AL  +H   +   +HRD
Sbjct: 115 DKYLYMVMEYMPGGDLVNLMSNYD--IPEKWARFY--TAEVVLALDAIH---SMGFIHRD 167

Query: 250 ISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA-GTYGYIALELVYTMVVT----EK 304
           +  +N+LL+ +    +ADFGT   +D +   R   A GT  YI+ E++ +         +
Sbjct: 168 VKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRE 227

Query: 305 CVIYSFGVVALEVLMGTHP 323
           C  +S GV   E+L+G  P
Sbjct: 228 CDWWSVGVFLYEMLVGDTP 246

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 50.4 bits (120), Expect = 7e-07
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 6/154 (3%)

Query: 170 VALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS 229
           V LK + H       F   +   ++F+ +Y+  G LF  L+ +   +E    R       
Sbjct: 48  VLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLE---PRARFYAAE 104

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYG 289
           +A AL YLH   + +IV+RD+   NILL+S     + DFG  +     +   +   GT  
Sbjct: 105 IASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPE 161

Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           Y+A E+++          +  G V  E+L G  P
Sbjct: 162 YLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPP 195

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 63/269 (23%), Positives = 102/269 (37%), Gaps = 50/269 (18%)

Query: 151 IGTGGYDSVYKA--ELPDGKV--VALKKLH--HSETEDSAF------------------- 185
           +G G + SV K    +  GK   VA+K L   H       F                   
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLI 62

Query: 186 -VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS 244
            V      M  + E    G L   L+   E    +      +   VA  ++YL    +  
Sbjct: 63  GVCKGEPLML-VMELAPLGPLLKYLKKRREIPVSDLK---ELAHQVAMGMAYLE---SKH 115

Query: 245 IVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-RTLQAGTY--GYIALELVYTMVV 301
            VHRD+++ N+LL +  +A ++DFG  R L   S   R   AG +   + A E +     
Sbjct: 116 FVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKF 175

Query: 302 TEKCVIYSFGVVALEVL-MGTHP-GELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD 359
           + K  ++S+GV   E    G  P GE+        G +++ +    +RL  P        
Sbjct: 176 SSKSDVWSYGVTLWEAFSYGAKPYGEM-------KGAEVIAMLESGERLPRPEECP---- 224

Query: 360 IILVSTIALACLRSKPKSRPTMQRISQEL 388
              + +I L+C + +P+ RPT   +    
Sbjct: 225 -QEIYSIMLSCWKYRPEDRPTFSELESTF 252

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 61/271 (22%), Positives = 103/271 (38%), Gaps = 36/271 (13%)

Query: 133 ILYENLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKL-------HHSETEDSA 184
           I++++  D ++ + I   IG G Y  V+K     +G   A+K L          E E + 
Sbjct: 8   IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNI 67

Query: 185 FVVYS--PQC-----MFFIYEYMERGSLFCVLR-------DDDEAIELNWTRRMN--IVK 228
               S  P       M++  +      L+ VL         D     L    RM   I+ 
Sbjct: 68  LKALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIA 127

Query: 229 SVAH-ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGT 287
            + H AL  L H      +HRD+  NNILL +     + DFG    L      R    GT
Sbjct: 128 YILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGT 187

Query: 288 YGYIALELV-----YTMVVTEKCVIYSFGVVALEV------LMGTHPGELLLSLSSSSGP 336
             ++A E++            +C ++S G+ A+E+      L   HP   L  +  +  P
Sbjct: 188 PFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRALFKIPRNPPP 247

Query: 337 KIMLIDILYQRLSPPINQKIIQDIILVSTIA 367
            +   ++     +  I + + +D     T++
Sbjct: 248 TLHQPELWSNEFNDFIRKCLTKDYEKRPTVS 278

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 49.8 bits (119), Expect = 8e-07
 Identities = 58/268 (21%), Positives = 101/268 (37%), Gaps = 49/268 (18%)

Query: 151 IGTGGYDSVYKAELPDGKVVA----------------------LKKLHHSETEDSAFVVY 188
           IG G +  VYK  L     VA                      LK+  H        V  
Sbjct: 3   IGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCV 62

Query: 189 SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHR 248
             Q ++ + E +  GSL   LR     + +   + + +    A  + YL        +HR
Sbjct: 63  QKQPIYIVMELVPGGSLLTFLRKKKNRLTVK--KLLQMSLDAAAGMEYLESKNC---IHR 117

Query: 249 DISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGT----YGYIALELVYTMVVTEK 304
           D+++ N L+  N    ++DFG  R  + +    T+  G       + A E +     T +
Sbjct: 118 DLAARNCLVGENNVLKISDFGMSR--EEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSE 175

Query: 305 CVIYSFGVVALEVLM---GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDII 361
             ++S+G++  E        +PG     +S+    +   I+  Y R+  P  Q   ++I 
Sbjct: 176 SDVWSYGILLWETFSLGDTPYPG-----MSNQQTRE--RIESGY-RMPAP--QLCPEEI- 224

Query: 362 LVSTIALACLRSKPKSRPTMQRISQELE 389
               + L C    P++RP+   I  EL+
Sbjct: 225 --YRLMLQCWAYDPENRPSFSEIYNELQ 250

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 50.3 bits (120), Expect = 8e-07
 Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISS 252
           +FF+ E++  G L   ++D       +  R       +   L +LH   +  I++RD+  
Sbjct: 71  LFFVMEFLNGGDLMFHIQDKGR---FDLYRATFYAAEIVCGLQFLH---SKGIIYRDLKL 124

Query: 253 NNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGV 312
           +N++L+ +    +ADFG  +      +  +   GT  YIA E++  +  T     +SFGV
Sbjct: 125 DNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGV 184

Query: 313 VALEVLMGTHP 323
           +  E+L+G  P
Sbjct: 185 LLYEMLIGQSP 195

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 49.9 bits (119), Expect = 9e-07
 Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 49/209 (23%)

Query: 151 IGTGGYDSVYKAELPD-GKVVALKKLHHSE---------------------TEDSAFVV- 187
           IG G +  VY+    D  ++ A+K L   E                      ++S F+V 
Sbjct: 1   IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVG 60

Query: 188 -----YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH-HDC 241
                 +   ++ + +YM  G LF  L+ +    E    R    +  +  AL +LH +D 
Sbjct: 61  LKFSFQTDSDLYLVTDYMSGGELFWHLQKEGRFSE---DRAKFYIAELVLALEHLHKYD- 116

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVR--LLDVDSSNRTLQAGTYGYIALELV--- 296
              IV+RD+   NILL++     + DFG  +  L D  ++N     GT  Y+A E++   
Sbjct: 117 ---IVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTF--CGTTEYLAPEVLLDE 171

Query: 297 --YTMVVTEKCVIYSFGVVALEVLMGTHP 323
             YT  V      +S GV+  E+  G  P
Sbjct: 172 KGYTKHVD----FWSLGVLVFEMCCGWSP 196

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 49.5 bits (118), Expect = 9e-07
 Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 33/222 (14%)

Query: 172 LKKLHH--------SETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRR 223
           LK L H        +  ED A ++        + EY   G+L   ++    ++    T  
Sbjct: 53  LKLLSHPNIIEYYENFLEDKALMI--------VMEYAPGGTLAEYIQKRCNSLLDEDT-- 102

Query: 224 MNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF-VADFGTVRLLDVDSSNRT 282
             I+      L  LHH  T  I+HRD+ + NILL+ +     + DFG  ++L   S   T
Sbjct: 103 --ILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYT 160

Query: 283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLID 342
           +  GT  YI+ EL       +K  I++ G V  E+        L  +  +++ P ++L  
Sbjct: 161 V-VGTPCYISPELCEGKPYNQKSDIWALGCVLYELA------SLKRAFEAANLPALVL-K 212

Query: 343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
           I+    + PI+ +   D   +  + L+ L   P  RP + +I
Sbjct: 213 IMSGTFA-PISDRYSPD---LRQLILSMLNLDPSKRPQLSQI 250

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 26/223 (11%)

Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           + KL H        V    + +F + EYM  G L   LR+    +   W   M     V 
Sbjct: 53  MMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDM--CSDVC 110

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR-LLDVDSSNRTLQAGT--- 287
            A+ YL  +     +HRD+++ N L+  +    V+DFG  R +LD      T   GT   
Sbjct: 111 EAMEYLESNG---FIHRDLAARNCLVGEDNVVKVSDFGLARYVLD---DQYTSSQGTKFP 164

Query: 288 YGYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHPGELLLSLSSSSGPKIMLIDILYQ 346
             +   E+      + K  ++SFGV+  EV   G  P E     +S     +     LY+
Sbjct: 165 VKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERF--SNSEVVESVSAGYRLYR 222

Query: 347 -RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
            +L+P            V TI  +C   KP+ RP  +++  +L
Sbjct: 223 PKLAPT----------EVYTIMYSCWHEKPEDRPAFKKLLSQL 255

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 53/189 (28%), Positives = 78/189 (41%), Gaps = 23/189 (12%)

Query: 202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL 261
           +  L+C L        +     + I +SV  A+ YLH +    I+HRDI + NI +N   
Sbjct: 166 KTDLYCYLAAKRN---IAICDILAIERSVLRAIQYLHEN---RIIHRDIKAENIFINHPG 219

Query: 262 EAFVADFGTVRL-LDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMG 320
           +  + DFG     +D++++     AGT    A EL+          I+S G+V  E  M 
Sbjct: 220 DVCLGDFGAACFPVDINANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFE--MA 277

Query: 321 THPGELL----LSLSSSSGPKIMLIDILYQRLSP---PINQKIIQDIILVSTIALACLRS 373
           T    L     L     S  +I LI I      P   PI+ +   D I +        +S
Sbjct: 278 TCHDSLFEKDGLDGDCDSDRQIKLI-IRRSGTHPNEFPIDAQANLDEIYIGL----AKKS 332

Query: 374 --KPKSRPT 380
             KP SRP 
Sbjct: 333 SRKPGSRPL 341

Length = 391

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 64/285 (22%), Positives = 106/285 (37%), Gaps = 64/285 (22%)

Query: 151 IGTGGYDSVYKAELPDGK------VVALKKLHHSETED------------SAF------- 185
           +G G +  V+  E    +      +VA+K L  + + D            + F       
Sbjct: 13  LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVK 72

Query: 186 ---VVYSPQCMFFIYEYMERGSLFCVLR-----------DDDEAIELNWTRRMNIVKSVA 231
              V         ++EYME G L   LR            D    EL  ++ + I   +A
Sbjct: 73  FYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIA 132

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGT---- 287
             + YL    +   VHRD+++ N L+  +L   + DFG  R  DV +++     G     
Sbjct: 133 SGMVYL---ASQHFVHRDLATRNCLVGYDLVVKIGDFGMSR--DVYTTDYYRVGGHTMLP 187

Query: 288 YGYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHPGELLLSLSSSSGPKIMLIDILYQ 346
             ++  E +     T +  ++SFGVV  E+   G  P      LS+    + +    L Q
Sbjct: 188 IRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQP---WYGLSNEEVIECITQGRLLQ 244

Query: 347 --RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
             R  P            V  I L C +  P+ R  ++ I + L+
Sbjct: 245 RPRTCPS----------EVYDIMLGCWKRDPQQRINIKDIHERLQ 279

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 54/208 (25%), Positives = 79/208 (37%), Gaps = 42/208 (20%)

Query: 145 FHIRYCIGTGGYDSVYKAE------------LPDGKVVALKKLHHSETE-------DSAF 185
           F     +GTG +  V                L   K+V LK++ H   E          F
Sbjct: 3   FEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPF 62

Query: 186 VVY------SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH 239
           +V           ++ + EY+  G LF  LR           R       V  AL YLH 
Sbjct: 63  LVNLYGSFQDDSNLYLVMEYVPGGELFSHLRKSG-RFPEPVARFY--AAQVVLALEYLHS 119

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELV--- 296
                IV+RD+   N+LL+S+    + DFG  +   V     TL  GT  Y+A E++   
Sbjct: 120 L---DIVYRDLKPENLLLDSDGYIKITDFGFAKR--VKGRTYTL-CGTPEYLAPEIILSK 173

Query: 297 -YTMVVTEKCVIYSFGVVALEVLMGTHP 323
            Y   V      ++ G++  E+L G  P
Sbjct: 174 GYGKAVD----WWALGILIYEMLAGYPP 197

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 6/131 (4%)

Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISS 252
           +FF+ EY+  G L   ++      + +  R       +   L +LH   +  IV+RD+  
Sbjct: 71  LFFVMEYLNGGDLMFHIQ---SCHKFDLPRATFYAAEIICGLQFLH---SKGIVYRDLKL 124

Query: 253 NNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGV 312
           +NILL+++    +ADFG  +   +  +      GT  YIA E++           +SFGV
Sbjct: 125 DNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGV 184

Query: 313 VALEVLMGTHP 323
           +  E+L+G  P
Sbjct: 185 LLYEMLIGQSP 195

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 68/246 (27%), Positives = 101/246 (41%), Gaps = 57/246 (23%)

Query: 190 PQCMFFIYEYMERGSLFCVLRDDD--EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVH 247
           P  +F ++EY+   +L  VL  D    A E   T R+  +  V  AL+  H+     IVH
Sbjct: 51  PGLLFAVFEYVPGRTLREVLAADGALPAGE---TGRL--MLQVLDALACAHNQ---GIVH 102

Query: 248 RDISSNNILLN-SNLE--AFVADFGTVRLL----DVDSSNRTLQA---GTYGYIALELVY 297
           RD+   NI+++ + +   A V DFG   LL    D D +  T      GT  Y A E + 
Sbjct: 103 RDLKPQNIMVSQTGVRPHAKVLDFGIGTLLPGVRDADVATLTRTTEVLGTPTYCAPEQLR 162

Query: 298 TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII 357
              VT    +Y++G++ LE L     G+ ++  +S       + +ILYQ+LSP       
Sbjct: 163 GEPVTPNSDLYAWGLIFLECLT----GQRVVQGAS-------VAEILYQQLSP------- 204

Query: 358 QDIILVSTIAL----ACLRSKPKSRPTMQRISQE-------------LEGKTPM--KKGL 398
            D+ L   IA       LR      P  +  S               L G   M    G 
Sbjct: 205 VDVSLPPWIAGHPLGQVLRKALNKDPRQRAASAPALAERFRALELCALVGILRMGEGAGR 264

Query: 399 KEISIP 404
           + I+ P
Sbjct: 265 EAIAAP 270

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 42/218 (19%)

Query: 193 MFFIYEYMERGSLFCVLR--DDDEAI-----------ELNWTRRMNIVKSVAHALSYLHH 239
           +  ++EYM+ G L   LR    D  I           EL  ++ ++I   +A  + YL  
Sbjct: 82  LIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYL-- 139

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE----- 294
             +   VHRD+++ N L+ +NL   + DFG  R  DV S++   + G +  + +      
Sbjct: 140 -ASQHFVHRDLATRNCLVGANLLVKIGDFGMSR--DVYSTD-YYRVGGHTMLPIRWMPPE 195

Query: 295 -LVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRL--SP 350
            ++Y    TE  V +SFGV+  E+   G  P   L           ++  I   R+   P
Sbjct: 196 SIMYRKFTTESDV-WSFGVILWEIFTYGKQPWFQL-------SNTEVIECITQGRVLERP 247

Query: 351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
            +  K + DI+      L C + +P+ R  ++ I + L
Sbjct: 248 RVCPKEVYDIM------LGCWQREPQQRLNIKEIYKIL 279

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 66/256 (25%), Positives = 109/256 (42%), Gaps = 44/256 (17%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALK-----------KLHHSETE-----DSAFVV--YSPQ 191
           +G G   +VYKA  L   +++A+K           K   SE E     DS +++  Y   
Sbjct: 9   LGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGA- 67

Query: 192 CMFFI-------YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS 244
             FF+        E+M+ GSL    +  +  +         I  +V   L+YL    +  
Sbjct: 68  --FFVENRISICTEFMDGGSLDVYRKIPEHVLG-------RIAVAVVKGLTYL---WSLK 115

Query: 245 IVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEK 304
           I+HRD+  +N+L+N+  +  + DFG    L V+S  +T   GT  Y+A E +        
Sbjct: 116 ILHRDVKPSNMLVNTRGQVKLCDFGVSTQL-VNSIAKTY-VGTNAYMAPERISGEQYGIH 173

Query: 305 CVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVS 364
             ++S G+  +E+ +G  P   +     S  P  +L  I+ +   PP+          V 
Sbjct: 174 SDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDE--DPPVLPVGQFSEKFVH 231

Query: 365 TIALACLRSKPKSRPT 380
            I   C+R +PK RP 
Sbjct: 232 FIT-QCMRKQPKERPA 246

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 55/216 (25%), Positives = 89/216 (41%), Gaps = 44/216 (20%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPD-GKVVALKKLHHSE----TEDSAFVV---------- 187
           + F I   IG G +  V   ++ + G+V A+K L+  E     E + F            
Sbjct: 1   DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDR 60

Query: 188 -------YSPQ---CMFFIYEYMERGSLFCVLRDDDEAIELNWTR----RMNIVKSVAHA 233
                  Y+ Q    ++ + +Y   G L  +L   ++ +  +  R     M +     H 
Sbjct: 61  RWITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQ 120

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA-GTYGYIA 292
           L Y         VHRDI  +N+LL+ N    +ADFG+   L  D + ++  A GT  YI+
Sbjct: 121 LGY---------VHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYIS 171

Query: 293 LELVYTM-----VVTEKCVIYSFGVVALEVLMGTHP 323
            E++  M         +C  +S GV   E+L G  P
Sbjct: 172 PEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETP 207

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 43/168 (25%)

Query: 145 FHIRYCIGTGGYDSVYKA---ELPDGKVVALKK------------------------LHH 177
           + I  CIG G Y  VYKA      DGK  A+KK                        L H
Sbjct: 2   YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKH 61

Query: 178 SE--TEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS----VA 231
               +    F+ ++ + ++ +++Y E   L+ +++   +A  ++    M  VKS    + 
Sbjct: 62  ENVVSLVEVFLEHADKSVYLLFDYAEH-DLWQIIKFHRQAKRVSIPPSM--VKSLLWQIL 118

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAF----VADFGTVRLLD 275
           + + YLH +    ++HRD+   NIL+           + D G  RL +
Sbjct: 119 NGVHYLHSNW---VLHRDLKPANILVMGEGPERGVVKIGDLGLARLFN 163

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 20/199 (10%)

Query: 210 RDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG 269
           ++   A  L   + +     VA  + YL        +HRD+++ N+L+  NL + +ADFG
Sbjct: 108 KEHGTASTLTSQQLLQFASDVATGMQYLSEK---QFIHRDLAARNVLVGENLASKIADFG 164

Query: 270 TVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHPGELLL 328
             R  +V    +T+      ++A+E +   V T K  ++SFGV+  E++ +G  P     
Sbjct: 165 LSRGEEV-YVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTP---YC 220

Query: 329 SLSSSSGPKIMLIDILYQ--RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQ 386
            ++ +      L + L Q  R+  P N     D   V  +   C R +P  RP   +IS 
Sbjct: 221 GMTCAE-----LYEKLPQGYRMEKPRN---CDD--EVYELMRQCWRDRPYERPPFAQISV 270

Query: 387 ELEGKTPMKKGLKEISIPE 405
           +L      +K    +++ E
Sbjct: 271 QLSRMLEARKAYVNMALFE 289

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 61/284 (21%), Positives = 115/284 (40%), Gaps = 59/284 (20%)

Query: 151 IGTGGYDSVYKA--ELPDGK---VVALKKLHHSETE----------------DSAFVV-- 187
           +G G +  V     +         VA+K L+HS  E                D   +V  
Sbjct: 12  LGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKY 71

Query: 188 ----YSP--QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC 241
                 P  + +  I EY+  GSL   L+   +  ++N  R +     +   + YL    
Sbjct: 72  KGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRD--QINLKRLLLFSSQICKGMDYLG--- 126

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS----SNRTLQAGTYGYIALELVY 297
           +   +HRD+++ NIL+ S     ++DFG  ++L  D          ++  + Y A E + 
Sbjct: 127 SQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWY-APECLR 185

Query: 298 TMVVTEKCVIYSFGVVALEVLMGTH-------PGELLLSLSSSSGPKIM--LIDILY--Q 346
           T   +    ++SFGV   E  + T+       P E L  +  + G  I+  L+++L   +
Sbjct: 186 TSKFSSASDVWSFGVTLYE--LFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGE 243

Query: 347 RLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           RL  P +    + D++ +      C  ++P+ RP+   +   ++
Sbjct: 244 RLPRPPSCPDEVYDLMKL------CWEAEPQDRPSFADLILIVD 281

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 31/150 (20%)

Query: 185 FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH-HDCTP 243
           + V + +    I +Y++ G LF +L+ +   +     +   I++ +  AL+ LH H    
Sbjct: 76  YSVTTLKGHVLIMDYIKDGDLFDLLKKEG-KLSEAEVK--KIIRQLVEALNDLHKH---- 128

Query: 244 SIVHRDISSNNILLNSNLE-AFVADFGTVRLLDVDSSNRTLQAGTYGYIALE----LVYT 298
           +I+H DI   N+L +   +  ++ D+G  +++   S       GT  Y + E      Y 
Sbjct: 129 NIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPS----CYDGTLDYFSPEKIKGHNYD 184

Query: 299 MVVTEKCVIYSF-----GVVALEVLMGTHP 323
                     SF     GV+  E+L G HP
Sbjct: 185 ---------VSFDWWAVGVLTYELLTGKHP 205

Length = 267

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 40/163 (24%)

Query: 151 IGTGGYDSVYKAELPD-GKVVALKK-----------------------LHH--------- 177
           IG G Y  VYKA   D G++VALKK                       L+H         
Sbjct: 15  IGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEI 74

Query: 178 -SETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSY 236
            ++ +D+          + ++EYM+   L  +L  +   +  +     + +K +   L+Y
Sbjct: 75  VTDKQDALDFKKDKGAFYLVFEYMDH-DLMGLL--ESGLVHFSEDHIKSFMKQLLEGLNY 131

Query: 237 LHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS 279
            H     + +HRDI  +NILLN+  +  +ADFG  RL + + S
Sbjct: 132 CHKK---NFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEES 171

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 65/266 (24%), Positives = 105/266 (39%), Gaps = 39/266 (14%)

Query: 148 RYCIGTGGYDSVYKA------------ELPDGKVVALKKLH-----HSETEDSAFVVYSP 190
           R  +G G Y  VY A            E+P+     ++ LH     HS  +    V Y  
Sbjct: 13  RVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLG 72

Query: 191 QCMF--FIYEYMER---GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
                 F   +ME+   GSL  +LR     ++ N    +   K +   L YLH +    I
Sbjct: 73  SDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDN---QI 129

Query: 246 VHRDISSNNILLNSNLEAF-VADFGTV-RLLDVDSSNRTLQAGTYGYIALELVYTMV--V 301
           VHRDI  +N+L+N+      ++DFGT  RL  ++    T   GT  Y+A E++       
Sbjct: 130 VHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETF-TGTLQYMAPEVIDKGPRGY 188

Query: 302 TEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDII 361
                I+S G   +E+  G  P    + L     P+  +  +   ++ P I + +  +  
Sbjct: 189 GAPADIWSLGCTIVEMATGKPP---FIELGE---PQAAMFKVGMFKIHPEIPESLSAE-- 240

Query: 362 LVSTIALACLRSKPKSRPTMQRISQE 387
                 L C    P  R +   + Q+
Sbjct: 241 -AKNFILRCFEPDPDKRASAHDLLQD 265

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 16/154 (10%)

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL--DVDSSNRTLQAGT 287
           VA  + +L    +   +HRD+++ NILL+ N    + DFG  R +  D D   +      
Sbjct: 183 VARGMEFL---ASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLP 239

Query: 288 YGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQR 347
             ++A E ++  V T +  ++SFGV+  E+           SL +S  P + + +   QR
Sbjct: 240 LKWMAPESIFDKVYTTQSDVWSFGVLLWEI----------FSLGASPYPGVQINEEFCQR 289

Query: 348 LSPPINQKIIQDII-LVSTIALACLRSKPKSRPT 380
           L      +  ++    +  I LAC +  PK RPT
Sbjct: 290 LKDGTRMRAPENATPEIYRIMLACWQGDPKERPT 323

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 65/253 (25%), Positives = 103/253 (40%), Gaps = 41/253 (16%)

Query: 145 FHIRYCIGTGGYDSVY---KAELPD-GKVVALKKL------------HHSETE------- 181
           F +   +GTG Y  V+   K    D GK+ A+K L             H+ TE       
Sbjct: 2   FELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHI 61

Query: 182 -DSAFVV---YSPQC---MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHAL 234
             S F+V   Y+ Q    +  I +Y+  G LF  L   +   E            +  AL
Sbjct: 62  RQSPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQRERFKEQEVQI---YSGEIVLAL 118

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ-AGTYGYIAL 293
            +LH      I++RDI   NILL+SN    + DFG  +    D   R     GT  Y+A 
Sbjct: 119 EHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAP 175

Query: 294 ELVYTMVVTEKCVI--YSFGVVALEVLMGTHPGELLLSLSSSS--GPKIMLIDILYQRLS 349
           ++V          +  +S GV+  E+L G  P  +    +S +    +I+  +  Y +  
Sbjct: 176 DIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEM 235

Query: 350 PPINQKIIQDIIL 362
             + + IIQ +++
Sbjct: 236 SALAKDIIQRLLM 248

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 53/216 (24%), Positives = 86/216 (39%), Gaps = 44/216 (20%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPDG-KVVALKKLHHSETEDSA----------------- 184
           E F I   IG G +  V   +L +  KV A+K L+  E    A                 
Sbjct: 1   EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDN 60

Query: 185 -------FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTR----RMNIVKSVAHA 233
                  +       ++ + +Y   G L  +L   ++ +  +  R     M I     H 
Sbjct: 61  QWITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQ 120

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGT-VRLLDVDSSNRTLQAGTYGYIA 292
           L Y         VHRDI  +NIL++ N    +ADFG+ ++L++  +   ++  GT  YI+
Sbjct: 121 LHY---------VHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYIS 171

Query: 293 LELVYTMV-----VTEKCVIYSFGVVALEVLMGTHP 323
            E++  M         +C  +S GV   E+L G  P
Sbjct: 172 PEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETP 207

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 68/289 (23%), Positives = 118/289 (40%), Gaps = 57/289 (19%)

Query: 146 HIRYC--IGTGGYDSVYKAE---LPD--GKVVALKKLHHSETED---------------S 183
           H+++   +G G + SV       L D  G+VVA+KKL HS  E                 
Sbjct: 5   HLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQH 64

Query: 184 AFVV------YSP--QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS-VAHAL 234
             +V      YS   + +  + EY+  GSL   L+   E ++    R++ +  S +   +
Sbjct: 65  DNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLD---HRKLLLYASQICKGM 121

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTL----QAGTYGY 290
            YL    +   VHRD+++ NIL+ S     + DFG  ++L  D     +    ++  + Y
Sbjct: 122 EYLG---SKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWY 178

Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVL----MGTHPGELLLSL--SSSSGPKIM--LID 342
            A E +     +    ++SFGVV  E+         P    + +  +   G  I+  LI+
Sbjct: 179 -APESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIE 237

Query: 343 ILY--QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           +L    RL  P           +  I   C  + P  RP+   ++ ++E
Sbjct: 238 LLKNNGRLPAPPGCP-----AEIYAIMKECWNNDPSQRPSFSELALQVE 281

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 55/237 (23%), Positives = 102/237 (43%), Gaps = 54/237 (22%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDS------------------- 183
           E++ I   +G G +  VYKA+  +  V+A  K+  +++E+                    
Sbjct: 5   EFWEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNI 64

Query: 184 -----AFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
                AF  Y    ++ + E+   G++  V+ + +  +     R   + K    AL+YLH
Sbjct: 65  VKLLDAF--YYENNLWILIEFCAGGAVDAVMLELERPLTEPQIRV--VCKQTLEALNYLH 120

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-RTLQ-----AGTYGYIA 292
            +    I+HRD+ + NIL   + +  +ADFG      V + N RT+Q      GT  ++A
Sbjct: 121 EN---KIIHRDLKAGNILFTLDGDIKLADFG------VSAKNTRTIQRRDSFIGTPYWMA 171

Query: 293 LELVYTMVVTE-----KCVIYSFGVVALEVLM------GTHPGELLLSLSSSSGPKI 338
            E+V      +     K  ++S G+  +E+          +P  +LL ++ S  P +
Sbjct: 172 PEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTL 228

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 46/173 (26%)

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS-NRTLQAGTYGYIA 292
           L YLH   +  I+HRDI   N+L+NSN    + DFG  R+ + D S + T +  T  Y A
Sbjct: 116 LKYLH---SAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRA 172

Query: 293 LELV-----YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQR 347
            E++     YT  V     I+S G +  E+L                        IL+Q 
Sbjct: 173 PEILMGSRHYTSAVD----IWSVGCIFAELLGRR---------------------ILFQA 207

Query: 348 LSPPINQKIIQDIILVSTIA---LAC-------LRS--KPKSRPTMQRISQEL 388
            SP     +I D++   ++     AC       LR   KP S P +  +S + 
Sbjct: 208 QSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTLSSQA 260

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 48.1 bits (114), Expect = 3e-06
 Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 22/183 (12%)

Query: 210 RDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG 269
             +  A  L+  + ++    VA  + YL        +HRD+++ NIL+  N  A +ADFG
Sbjct: 101 IANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADFG 157

Query: 270 TVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHPGELLL 328
             R  +V    +T+      ++A+E +   V T    ++S+GV+  E++ +G  P     
Sbjct: 158 LSRGQEV-YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTP----- 211

Query: 329 SLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL---VSTIALACLRSKPKSRPTMQRIS 385
                 G   M    LY++L  P   ++ + +     V  +   C R KP  RP+  +I 
Sbjct: 212 ----YCG---MTCAELYEKL--PQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQIL 262

Query: 386 QEL 388
             L
Sbjct: 263 VSL 265

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 46/225 (20%)

Query: 193 MFFIYEYMERGSLFCVLR---------------------DDDEAIELNWTRRMNIVKSVA 231
           +  I EY + GSL   LR                     D+ +   L     ++    ++
Sbjct: 78  LLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQIS 137

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS--NRTLQAGTYG 289
             + YL       +VHRD+++ N+L+    +  ++DFG  R +  + S   R+       
Sbjct: 138 RGMQYLAE---MKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVK 194

Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIM---LIDILYQ 346
           ++A+E ++  + T +  ++SFGV+  E          +++L  +  P I    L ++L  
Sbjct: 195 WMAIESLFDHIYTTQSDVWSFGVLLWE----------IVTLGGNPYPGIAPERLFNLLKT 244

Query: 347 --RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
             R+  P N         +  + L C + +P  RPT   IS+ELE
Sbjct: 245 GYRMERPENCSE-----EMYNLMLTCWKQEPDKRPTFADISKELE 284

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN 280
            L YLH   + +++HRD+  +NIL+NSN +  + DFG  R +D D   
Sbjct: 115 GLKYLH---SANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDE 159

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 41/212 (19%)

Query: 193 MFFIYEYMERGSLFCVLRD-------------DDEAIELNWTRRMNIVKSVAHALSYLHH 239
           ++   EY   G+L   LR              +  A  L+  + ++    VA  + YL  
Sbjct: 83  LYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ 142

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM 299
                 +HRD+++ NIL+  N  A +ADFG  R  +V    +T+      ++A+E +   
Sbjct: 143 K---QFIHRDLAARNILVGENYVAKIADFGLSRGQEV-YVKKTMGRLPVRWMAIESLNYS 198

Query: 300 VVTEKCVIYSFGVVALEVL-MGTHP------GELLLSLSSSSGPKIMLIDILYQRLSPPI 352
           V T    ++S+GV+  E++ +G  P       EL   L                RL  P+
Sbjct: 199 VYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLP------------QGYRLEKPL 246

Query: 353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
           N     D   V  +   C R KP  RP+  +I
Sbjct: 247 N---CDD--EVYDLMRQCWREKPYERPSFAQI 273

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 20/200 (10%)

Query: 196 IYEYMERGSLFCVL---RDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISS 252
           I  +M+ G L   L   R  +E   L     +  +  +A  + YL    + + +HRD+++
Sbjct: 85  ILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLS---SKNFIHRDLAA 141

Query: 253 NNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY--GYIALELVYTMVVTEKCVIYSF 310
            N +LN N+   VADFG  + +      R   A      ++ALE +   V T    +++F
Sbjct: 142 RNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAF 201

Query: 311 GVVALEVL-MGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALA 369
           GV   E++  G  P       +     +I    I   RL  P +   ++D+     +   
Sbjct: 202 GVTMWEIMTRGQTP------YAGVENSEIYNYLIKGNRLKQPPD--CLEDVY---ELMCQ 250

Query: 370 CLRSKPKSRPTMQRISQELE 389
           C   +PK RP+ Q +  +LE
Sbjct: 251 CWSPEPKCRPSFQHLRDQLE 270

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 6/131 (4%)

Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISS 252
           +FF+ EY+  G L   ++    +   +  R       +   L +LH      I++RD+  
Sbjct: 71  LFFVMEYLNGGDLMFHIQS---SGRFDEARARFYAAEIICGLQFLH---KKGIIYRDLKL 124

Query: 253 NNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGV 312
           +N+LL+ +    +ADFG  +         +   GT  YIA E++      E    +SFGV
Sbjct: 125 DNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGV 184

Query: 313 VALEVLMGTHP 323
           +  E+L+G  P
Sbjct: 185 LLYEMLIGQSP 195

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 27/157 (17%)

Query: 237 LHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV---DSSNRTLQAGTYGYIAL 293
           +HH  +  ++HRDI S NILL SN    + DFG  ++      D   RT   GT  Y+A 
Sbjct: 156 VHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTF-CGTPYYVAP 214

Query: 294 ELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS---- 349
           E+      ++K  ++S GV+  E+L    P +         G  +   +++++ L+    
Sbjct: 215 EIWRRKPYSKKADMFSLGVLLYELLTLKRPFD---------GENME--EVMHKTLAGRYD 263

Query: 350 --PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
             PP     +Q+I  V+ +    L S PK RP+  ++
Sbjct: 264 PLPPSISPEMQEI--VTAL----LSSDPKRRPSSSKL 294

Length = 496

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 28/147 (19%)

Query: 190 PQCMFFIYEYMERGSL--FCVLR-----------DDDEAIELNWTRRMNIVKSVAHALSY 236
           P CM  ++EY+  G L  F V             D+     L+ +  ++I   +A  + Y
Sbjct: 82  PTCM--LFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEY 139

Query: 237 L--HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGT----YGY 290
           L  HH      VHRD+++ N L+   L   ++DFG  R  D+ S++             +
Sbjct: 140 LSSHH-----FVHRDLAARNCLVGEGLTVKISDFGLSR--DIYSADYYRVQSKSLLPVRW 192

Query: 291 IALELVYTMVVTEKCVIYSFGVVALEV 317
           +  E +     T +  I+SFGVV  E+
Sbjct: 193 MPPEAILYGKFTTESDIWSFGVVLWEI 219

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 47.5 bits (114), Expect = 5e-06
 Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 29/147 (19%)

Query: 150 CIGTGGYDSVYKA-ELPDGKVVALKKL-----------------------HHSETEDSAF 185
            +G G + SVY A     G++VA+KK+                        H        
Sbjct: 6   QLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKE 65

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           V      ++F++EYME G+L+ +++D       + +   +I+  +   L+++H       
Sbjct: 66  VFRENDELYFVFEYME-GNLYQLMKDRK-GKPFSESVIRSIIYQILQGLAHIHKH---GF 120

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVR 272
            HRD+   N+L++      +ADFG  R
Sbjct: 121 FHRDLKPENLLVSGPEVVKIADFGLAR 147

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 6/154 (3%)

Query: 170 VALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS 229
           V LK + H       +   + + ++F+ +++  G LF  L+ +    E    R       
Sbjct: 48  VLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNGGELFFHLQRERSFPE---PRARFYAAE 104

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYG 289
           +A AL YLH   + +IV+RD+   NILL+S     + DFG  +     S   T   GT  
Sbjct: 105 IASALGYLH---SINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTPE 161

Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           Y+A E++           +  G V  E+L G  P
Sbjct: 162 YLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPP 195

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 29/172 (16%)

Query: 226 IVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA 285
           + + +  AL++LH      ++HRD+ + NILL  + +  +ADFG           R    
Sbjct: 108 VCRQMLEALNFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFI 164

Query: 286 GTYGYIALELVYTMVVTE-----KCVIYSFGVVALEVLMG------THPGELLLSLSSSS 334
           GT  ++A E+V      +     K  I+S G+  +E+          +P  +LL +  S 
Sbjct: 165 GTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMRVLLKILKSE 224

Query: 335 GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQ 386
            P +           P        D +       +CL   P  RPT   + +
Sbjct: 225 PPTL---------DQPSKWSSSFNDFL------KSCLVKDPDDRPTAAELLK 261

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 47.3 bits (112), Expect = 6e-06
 Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 15/183 (8%)

Query: 170 VALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS 229
           V LK L H       +   + + ++F+ +Y+  G LF  L+ +   +E    R       
Sbjct: 48  VLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNGGELFFHLQRERCFLE---PRARFYAAE 104

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL-LDVDSSNRTLQAGTY 288
           VA A+ YLH   + +I++RD+   NILL+S     + DFG  +  ++ + +  T   GT 
Sbjct: 105 VASAIGYLH---SLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTF-CGTP 160

Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRL 348
            Y+A E++           +  G V  E+L G  P         S     M  +IL++ L
Sbjct: 161 EYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPP-------FYSRDVSQMYDNILHKPL 213

Query: 349 SPP 351
             P
Sbjct: 214 QLP 216

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 41/207 (19%)

Query: 151 IGTGGYDSVYKAELPDGKVVALKKLH-HSETEDSA---------------------FVVY 188
           +G G Y +VY      G+++A+K++   +    +A                      V Y
Sbjct: 8   LGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQY 67

Query: 189 SPQCM------FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCT 242
              C+       F+ E++  GS+  +L       E  + +     K +   ++YLH++C 
Sbjct: 68  LGTCLDDNTISIFM-EFVPGGSISSILNRFGPLPEPVFCK---YTKQILDGVAYLHNNC- 122

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT----LQA--GTYGYIALELV 296
             +VHRDI  NN++L  N    + DFG  R L     + T    L++  GT  ++A E++
Sbjct: 123 --VVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVI 180

Query: 297 YTMVVTEKCVIYSFGVVALEVLMGTHP 323
                  K  I+S G    E+  G  P
Sbjct: 181 NESGYGRKSDIWSIGCTVFEMATGKPP 207

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 31/207 (14%)

Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISS 252
           +  I EY   G L   LR   E+  L     ++    VA  +++L    + + +HRD+++
Sbjct: 114 ILVITEYCCYGDLLNFLRRKRESF-LTLEDLLSFSYQVAKGMAFL---ASKNCIHRDLAA 169

Query: 253 NNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY---GYIALELVYTMVVTEKCVIYS 309
            N+LL       + DFG  R +  D SN  ++        ++A E ++  V T +  ++S
Sbjct: 170 RNVLLTHGKIVKICDFGLARDIMND-SNYVVKGNARLPVKWMAPESIFNCVYTFESDVWS 228

Query: 310 FGVVALEVLMGTHPGELLLSLSSSSGPKIM-------LIDILYQRLSPPINQKIIQDIIL 362
           +G++  E          + SL S+  P +        LI   Y+   P      I DI+ 
Sbjct: 229 YGILLWE----------IFSLGSNPYPGMPVDSKFYKLIKEGYRMAQPEHAPAEIYDIM- 277

Query: 363 VSTIALACLRSKPKSRPTMQRISQELE 389
                  C  + P  RPT ++I Q + 
Sbjct: 278 -----KTCWDADPLKRPTFKQIVQLIG 299

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score = 47.3 bits (112), Expect = 7e-06
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 12/136 (8%)

Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISS 252
           ++ + EYM  G L  ++ + D  +   W R       V  AL  +H   +   +HRD+  
Sbjct: 118 LYMVMEYMPGGDLVNLMSNYD--VPEKWARFYT--AEVVLALDAIH---SMGFIHRDVKP 170

Query: 253 NNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA-GTYGYIALELVYTM----VVTEKCVI 307
           +N+LL+ +    +ADFGT   ++ +   R   A GT  YI+ E++ +         +C  
Sbjct: 171 DNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDW 230

Query: 308 YSFGVVALEVLMGTHP 323
           +S GV   E+L+G  P
Sbjct: 231 WSVGVFLYEMLVGDTP 246

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 47.2 bits (113), Expect = 7e-06
 Identities = 49/186 (26%), Positives = 69/186 (37%), Gaps = 54/186 (29%)

Query: 143 EYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKK-----------------------LHHS 178
             + I   +G G Y  V+KA +    +VVALKK                       L   
Sbjct: 7   RKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDH 66

Query: 179 ETEDSAFVVYSPQCMFFIY---EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH--- 232
                   V   +    IY   EYME               +L+   R NI++ V     
Sbjct: 67  PNIVKLLNVIKAENDKDIYLVFEYME--------------TDLHAVIRANILEDVHKRYI 112

Query: 233 ------ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAG 286
                 AL Y+H   + +++HRD+  +NILLNS+    +ADFG  R L     N      
Sbjct: 113 MYQLLKALKYIH---SGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVL 169

Query: 287 TYGYIA 292
           T  Y+A
Sbjct: 170 TD-YVA 174

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 65/273 (23%), Positives = 102/273 (37%), Gaps = 75/273 (27%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVA--------------------------LKKLHH------ 177
           +G+G + SVY+   L DG   A                          L KL H      
Sbjct: 8   LGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQY 67

Query: 178 --SETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDD---EAIELNWTRRMNIVKSVAH 232
             +E E+    ++         E +  GSL  +L+      E +   +TR+  I+     
Sbjct: 68  LGTEREEDNLYIF--------LELVPGGSLAKLLKKYGSFPEPVIRLYTRQ--ILL---- 113

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIA 292
            L YLH     + VHRDI   NIL+++N    +ADFG  + +   S  ++ +   Y ++A
Sbjct: 114 GLEYLHDR---NTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFKGSPY-WMA 169

Query: 293 LELV-----YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQR 347
            E++     Y +       I+S G   LE+  G  P        S       +  I   +
Sbjct: 170 PEVIAQQGGYGLAAD----IWSLGCTVLEMATGKPP-------WSQLEGVAAVFKIGRSK 218

Query: 348 LSPPINQKIIQDIILVSTIALACLRSKPKSRPT 380
             PPI   +  +        L CL+  P  RPT
Sbjct: 219 ELPPIPDHLSDE---AKDFILKCLQRDPSLRPT 248

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 47.0 bits (111), Expect = 8e-06
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 24/148 (16%)

Query: 193 MFFIYEYMERGSLFCVLR----------DDDEAIELNWTRRMNIVKSVAHALSYLHHDCT 242
           +  ++EYM+ G L   LR          + +   EL  ++ ++I + +A  + YL    +
Sbjct: 82  LIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYL---AS 138

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE------LV 296
              VHRD+++ N L+  NL   + DFG  R  DV S++   + G +  + +       ++
Sbjct: 139 QHFVHRDLATRNCLVGENLLVKIGDFGMSR--DVYSTD-YYRVGGHTMLPIRWMPPESIM 195

Query: 297 YTMVVTEKCVIYSFGVVALEVLM-GTHP 323
           Y    TE  V +S GVV  E+   G  P
Sbjct: 196 YRKFTTESDV-WSLGVVLWEIFTYGKQP 222

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 38/172 (22%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALKKLHHSETE--------DSAFVVYSPQCMFFIYEYME 201
           IG+G    VYK      G V+A+K++  +  +        D   V+ S  C + +  Y  
Sbjct: 23  IGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYG- 81

Query: 202 RGSLFCVLRDDDEAI--ELNWT------RRMN----------IVKSVAHALSYLHHDCTP 243
                  + D D  I  EL  T      +R+           +  ++  AL YL      
Sbjct: 82  -----YFITDSDVFICMELMSTCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKE--KH 134

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTV-RLLDVDSSNRTLQAGTYGYIALE 294
            ++HRD+  +NILL+++    + DFG   RL  VDS  +T  AG   Y+A E
Sbjct: 135 GVIHRDVKPSNILLDASGNVKLCDFGISGRL--VDSKAKTRSAGCAAYMAPE 184

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 12/136 (8%)

Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISS 252
           ++ + EYM  G L  ++ + D  +   W +       V  AL  +H   +  ++HRD+  
Sbjct: 118 LYMVMEYMPGGDLVNLMSNYD--VPEKWAKFYT--AEVVLALDAIH---SMGLIHRDVKP 170

Query: 253 NNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA-GTYGYIALELVYTM----VVTEKCVI 307
           +N+LL+ +    +ADFGT   +D     R   A GT  YI+ E++ +         +C  
Sbjct: 171 DNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDW 230

Query: 308 YSFGVVALEVLMGTHP 323
           +S GV   E+L+G  P
Sbjct: 231 WSVGVFLFEMLVGDTP 246

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 56/246 (22%), Positives = 109/246 (44%), Gaps = 53/246 (21%)

Query: 135 YENL---IDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETE---------- 181
           YE++   +D  E + I   +G G +  VYKA+  +   +A  K+  +++E          
Sbjct: 1   YEHVRRDLDPNEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEI 60

Query: 182 ------DSAFVV------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS 229
                 +  ++V      Y    ++ + E+   G++  ++ + D  +     +   I + 
Sbjct: 61  EILATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQ--VICRQ 118

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-RTLQA--- 285
           +  AL YLH   +  I+HRD+ + N+LL  + +  +ADFG      V + N +TLQ    
Sbjct: 119 MLEALQYLH---SMKIIHRDLKAGNVLLTLDGDIKLADFG------VSAKNVKTLQRRDS 169

Query: 286 --GTYGYIALELVYTMVVTE-----KCVIYSFGVVALEVLM------GTHPGELLLSLSS 332
             GT  ++A E+V    + +     K  I+S G+  +E+          +P  +LL ++ 
Sbjct: 170 FIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAK 229

Query: 333 SSGPKI 338
           S  P +
Sbjct: 230 SEPPTL 235

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 46/201 (22%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALKKLH-HSETE---DSAF-------------------V 186
           IG G Y  VYKA     G+VVALKK+   +ETE    +A                    V
Sbjct: 8   IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDV 67

Query: 187 VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS----VAHALSYLHHDCT 242
           +++   ++ ++E++ +        D      +     + ++KS    +   L++ H   +
Sbjct: 68  IHTENKLYLVFEFLHQD--LKKFMDASPLSGI----PLPLIKSYLFQLLQGLAFCH---S 118

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELV-----Y 297
             ++HRD+   N+L+N+     +ADFG  R   V     T +  T  Y A E++     Y
Sbjct: 119 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 178

Query: 298 TMVVTEKCVIYSFGVVALEVL 318
           +  V     I+S G +  E++
Sbjct: 179 STAVD----IWSLGCIFAEMV 195

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 12/98 (12%)

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGT-VRLLDVDSSNRTLQAGTYGY 290
           H++  LH+      VHRDI  +N+LL+ N    +ADFG+ +++    +   ++  GT  Y
Sbjct: 116 HSIHQLHY------VHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDY 169

Query: 291 IALELVYTM-----VVTEKCVIYSFGVVALEVLMGTHP 323
           I+ E++  M         +C  +S GV   E+L G  P
Sbjct: 170 ISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETP 207

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 42/219 (19%)

Query: 193 MFFIYEYMERGSL---------------FCVLRDDDEAIELNWTRRMNIVKSVAHALSYL 237
           ++ I EY  +G+L               + + R  DE  ++ +   ++    VA  + YL
Sbjct: 96  LYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDE--QMTFKDLVSCTYQVARGMEYL 153

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR-LLDVDSSNRTLQAG-TYGYIALEL 295
               +   +HRD+++ N+L+  N    +ADFG  R + ++D   +T        ++A E 
Sbjct: 154 ---ASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEA 210

Query: 296 VYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY-----QRLSP 350
           ++  V T +  ++SFGV+  E+           +L  S  P I + ++        R+  
Sbjct: 211 LFDRVYTHQSDVWSFGVLMWEI----------FTLGGSPYPGIPVEELFKLLKEGHRMDK 260

Query: 351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           P N     ++ ++      C  + P  RPT +++ ++L+
Sbjct: 261 PAN--CTNELYMMMR---DCWHAIPSHRPTFKQLVEDLD 294

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 30/196 (15%)

Query: 151 IGTGGYDSVYKAELPDGKVVALKKLHHSETE-----------------DSAFVV------ 187
           +G G    V K +     ++  +KL H E +                 +S ++V      
Sbjct: 13  LGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAF 72

Query: 188 YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVH 247
           YS   +    E+M+ GSL  VL+   EA  +       +  +V   L+YL       I+H
Sbjct: 73  YSDGEISICMEHMDGGSLDQVLK---EAKRIPEEILGKVSIAVLRGLAYLRE--KHQIMH 127

Query: 248 RDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVI 307
           RD+  +NIL+NS  E  + DFG    L +DS   +   GT  Y++ E +     + +  I
Sbjct: 128 RDVKPSNILVNSRGEIKLCDFGVSGQL-IDSMANSF-VGTRSYMSPERLQGTHYSVQSDI 185

Query: 308 YSFGVVALEVLMGTHP 323
           +S G+  +E+ +G +P
Sbjct: 186 WSMGLSLVELAIGRYP 201

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 34/172 (19%)

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS-----NRTLQ 284
           VA  + +L    + + +HRD+++ N+LL     A + DFG  R +  DS+     N  L 
Sbjct: 221 VAQGMDFL---ASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLP 277

Query: 285 AGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIM----- 339
                ++A E ++  V T +  ++S+G++  E+           SL  S  P I+     
Sbjct: 278 V---KWMAPESIFDCVYTVQSDVWSYGILLWEI----------FSLGKSPYPGILVNSKF 324

Query: 340 --LIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
             ++   YQ   P      I       +I   C   +P  RPT  +ISQ ++
Sbjct: 325 YKMVKRGYQMSRPDFAPPEIY------SIMKMCWNLEPTERPTFSQISQLIQ 370

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 49/156 (31%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF------------------------ 185
           IG G Y  VYKA +   G++VALKK+   ETED                           
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVALKKIR-LETEDEGVPSTAIREISLLKELNHPNIVRLLD 65

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDD-----DEAIELNWTRRMNIVKS----VAHALSY 236
           VV+S   ++ ++E+         L  D     D +        +  +KS    +   ++Y
Sbjct: 66  VVHSENKLYLVFEF---------LDLDLKKYMDSSPLTGLDPPL--IKSYLYQLLQGIAY 114

Query: 237 LHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR 272
            H   +  ++HRD+   N+L++      +ADFG  R
Sbjct: 115 CH---SHRVLHRDLKPQNLLIDREGALKLADFGLAR 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 12/140 (8%)

Query: 189 SPQCMFFIYEYMERGSLFCVL---RDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           +   +FF+ EY+  G L   +   R  DE       R       V  AL +LH      +
Sbjct: 67  TKDRLFFVMEYVNGGDLMFQIQRSRKFDEP------RSRFYAAEVTLALMFLHRH---GV 117

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKC 305
           ++RD+  +NILL++     +ADFG  +   ++    T   GT  YIA E++  +      
Sbjct: 118 IYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGPSV 177

Query: 306 VIYSFGVVALEVLMGTHPGE 325
             ++ GV+  E++ G  P E
Sbjct: 178 DWWALGVLMYEMMAGQPPFE 197

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 6/139 (4%)

Query: 185 FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS 244
           F   SP+ ++ +  ++  G LF  L+ +      + +R       +  AL  LH     +
Sbjct: 60  FSFQSPEKLYLVLAFINGGELFHHLQREGR---FDLSRARFYTAELLCALENLH---KFN 113

Query: 245 IVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEK 304
           +++RD+   NILL+      + DFG  +L   D        GT  Y+A EL+     T+ 
Sbjct: 114 VIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTKA 173

Query: 305 CVIYSFGVVALEVLMGTHP 323
              ++ GV+  E+L G  P
Sbjct: 174 VDWWTLGVLLYEMLTGLPP 192

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 28/195 (14%)

Query: 209 LRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADF 268
           L  DD +  L     ++    VA  + +L    + + VHRD+++ N+LL       + DF
Sbjct: 225 LLSDDGSEGLTTLDLLSFTYQVARGMEFL---ASKNCVHRDLAARNVLLAQGKIVKICDF 281

Query: 269 GTVRLLDVDSSNRTLQAGTY---GYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGE 325
           G  R +  D SN   +  T+    ++A E ++  + T    ++S+G++  E+        
Sbjct: 282 GLARDIMHD-SNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEI-------- 332

Query: 326 LLLSLSSSSGPKIMLIDILYQ------RLSPPINQKIIQDIILVSTIALACLRSKPKSRP 379
              SL  +  P +++    Y       R++ P      Q+   V  I + C  S+P+ RP
Sbjct: 333 --FSLGGTPYPGMIVDSTFYNKIKSGYRMAKP--DHATQE---VYDIMVKCWNSEPEKRP 385

Query: 380 TMQRISQELEGKTPM 394
           +   +S  +E   P 
Sbjct: 386 SFLHLSDIVESLLPS 400

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR alpha signaling is important in the formation of lung alveoli, intestinal villi, mesenchymal dermis, and hair follicles, as well as in the development of oligodendrocytes, retinal astrocytes, neural crest cells, and testicular cells. Aberrant PDGFR alpha expression is associated with some human cancers. Mutations in PDGFR alpha have been found within a subset of gastrointestinal stromal tumors (GISTs). An active fusion protein FIP1L1-PDGFR alpha, derived from interstitial deletion, is associated with idiopathic hypereosinophilic syndrome (HES) and chronic eosinophilic leukemia (CEL). Length = 400

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 48/222 (21%), Positives = 77/222 (34%), Gaps = 49/222 (22%)

Query: 189 SPQCMFFIYEYMERGSLFCVLRDDDEAIE------LNWTRRMNIVKSVAHALSYLHHDCT 242
            P  M  I EY + G L   LR      E      L+  +++ +   +A  + +L     
Sbjct: 81  EPHYM--ILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLS---N 135

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYG---YIALELVYTM 299
              VHRD+++ N L++S  E  V+     +  DV +S             ++A E V   
Sbjct: 136 ARFVHRDLAARNCLVSSQREVKVSLLSLSK--DVYNSEYYKLRNALIPLRWLAPEAVQED 193

Query: 300 VVTEKCVIYSFGVVALEVLMGT---HPG----ELLLSLSSSSGPKIMLIDILYQRLSPPI 352
             + K  ++SFGV+  EV         G    E+L  L +               L  P 
Sbjct: 194 DFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQAGK-----------LELPVPE 242

Query: 353 N-----QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                  K++            C    PK RP+   +   L 
Sbjct: 243 GCPSRLYKLMT----------RCWAVNPKDRPSFSELVSALG 274

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 51/211 (24%)

Query: 192 CMFFIYEYMERGSLFC-------VLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS 244
            ++ + +Y E G L+        VL  +D+   L+W  ++ +      AL ++H      
Sbjct: 73  NLYIVMDYCEGGDLYKKINAQRGVLFPEDQI--LDWFVQICL------ALKHVHDR---K 121

Query: 245 IVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ-----AGTYGYIALELVYTM 299
           I+HRDI S NI L  +    + DFG  R+L     N T++      GT  Y++ E+    
Sbjct: 122 ILHRDIKSQNIFLTKDGTIKLGDFGIARVL-----NSTVELARTCIGTPYYLSPEICENR 176

Query: 300 VVTEKCVIYSFGVVALEVLMGTHPGE------LLLSLSSSSGPKIMLIDILYQRLSPPIN 353
               K  I++ G V  E+    H  E      L+L +   S P +          S  + 
Sbjct: 177 PYNNKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIRGSYPPVSS------HYSYDLR 230

Query: 354 QKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
                   LVS +     +  P+ RP++  I
Sbjct: 231 N-------LVSQL----FKRNPRDRPSVNSI 250

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 53/216 (24%), Positives = 83/216 (38%), Gaps = 47/216 (21%)

Query: 145 FHIRYCIGTGGYDSVYKAEL----PDGKVVALKKL------------HHSETE------- 181
           F +   +GTG Y  V+          GK+ A+K L             H+ TE       
Sbjct: 2   FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAV 61

Query: 182 -DSAFVV---YSPQC---MFFIYEYMERGSLFCVL----RDDDEAIELNWTRRMNIVKSV 230
               F+V   Y+ Q    +  I +Y+  G LF  L       +  + +        +  +
Sbjct: 62  RRCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQREHFTESEVRV-------YIAEI 114

Query: 231 AHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ-AGTYG 289
             AL +LH      I++RDI   NILL+S     + DFG  +    +   R     GT  
Sbjct: 115 VLALDHLHQ---LGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIE 171

Query: 290 YIALELVYTMVVTEKCVI--YSFGVVALEVLMGTHP 323
           Y+A E++          +  +S GV+  E+L G  P
Sbjct: 172 YMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASP 207

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 30/194 (15%)

Query: 151 IGTGGYDSVYKAELP-DGKVVALKKLHHSETEDSAF----------------------VV 187
           +G G Y +VYK +   +GK+VALK +   E E + F                      ++
Sbjct: 13  LGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDII 72

Query: 188 YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVH 247
           ++ + +  ++EY+   +  C   D      L+       +  +   LSY+H      I+H
Sbjct: 73  HTKETLTLVFEYVH--TDLCQYMDKHPG-GLHPENVKLFLFQLLRGLSYIHQR---YILH 126

Query: 248 RDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCV- 306
           RD+   N+L++   E  +ADFG  R   V S   + +  T  Y   +++        C+ 
Sbjct: 127 RDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLD 186

Query: 307 IYSFGVVALEVLMG 320
           ++  G + +E++ G
Sbjct: 187 MWGVGCIFVEMIQG 200

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 24/160 (15%)

Query: 226 IVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA 285
           I       L+YLH       +HRDI + NILL       +ADFG+  L  V  +N  +  
Sbjct: 120 ICHGALQGLAYLHSHER---IHRDIKAGNILLTEPGTVKLADFGSASL--VSPANSFV-- 172

Query: 286 GTYGYIALELVYTM---VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLID 342
           GT  ++A E++  M       K  ++S G+  +E+     P   L ++++ S        
Sbjct: 173 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPP---LFNMNAMSA------- 222

Query: 343 ILYQ--RLSPPINQKIIQDIILVSTIALACLRSKPKSRPT 380
            LY   +   P            + +   CL+  P+ RP+
Sbjct: 223 -LYHIAQNDSPTLSSNDWSDYFRNFVDS-CLQKIPQDRPS 260

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 52/228 (22%)

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLR----DDDEA---IELNWTRRMNIVKSVAHALSYLH 238
           VV + Q    + E M +G L   LR    + +           + + +   +A  ++YL 
Sbjct: 77  VVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLA 136

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGT----YGYIALE 294
                  VHRD+++ N ++  +L   + DFG  R  D+  ++   + G       ++A E
Sbjct: 137 ---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTR--DIYETDYYRKGGKGLLPVRWMAPE 191

Query: 295 LVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ 354
            +   V T K  ++SFGVV  E  M T                  L +  YQ LS   N+
Sbjct: 192 SLKDGVFTTKSDVWSFGVVLWE--MAT------------------LAEQPYQGLS---NE 228

Query: 355 KIIQDII-------------LVSTIALACLRSKPKSRPTMQRISQELE 389
           ++++ +I              +  +   C +  PK RPT   I   L+
Sbjct: 229 EVLKFVIDGGHLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVSSLK 276

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 226 IVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA 285
           I K +   L YLH      I+HRD+ + NI +N   +  + D G  +   V  +   L A
Sbjct: 162 IEKQILEGLRYLHAQ---RIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAFLGL-A 217

Query: 286 GTYGYIALELVYTMVVTEKCVIYSFGVVALEVL 318
           GT    A E++       K  I+S G+V  E+L
Sbjct: 218 GTVETNAPEVLARDKYNSKADIWSAGIVLFEML 250

Length = 357

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 41/157 (26%)

Query: 190 PQCMFFIYEYMERGSLFCVLR----DDDEA------------IELNWTRRMNIVKSVAHA 233
           P CM  I EYME G L   L     DD E               ++++  +++   +A  
Sbjct: 93  PLCM--ITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASG 150

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY----- 288
           + YL    + + VHRD+++ N L+  NL   +ADFG          +R L AG Y     
Sbjct: 151 MKYL---SSLNFVHRDLATRNCLVGENLTIKIADFGM---------SRNLYAGDYYRIQG 198

Query: 289 ------GYIALELVYTMVVTEKCVIYSFGVVALEVLM 319
                  ++A E +     T    +++FGV   E+LM
Sbjct: 199 RAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILM 235

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 12/140 (8%)

Query: 189 SPQCMFFIYEYMERGSLFCVL---RDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           +P  +FF+ E++  G L   +   R  DEA      R       +  AL +LH      I
Sbjct: 67  TPDRLFFVMEFVNGGDLMFHIQKSRRFDEA------RARFYAAEITSALMFLH---DKGI 117

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKC 305
           ++RD+  +N+LL+      +ADFG  +    +    +   GT  YIA E++  M+     
Sbjct: 118 IYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYGPSV 177

Query: 306 VIYSFGVVALEVLMGTHPGE 325
             ++ GV+  E+L G  P E
Sbjct: 178 DWWAMGVLLYEMLCGHAPFE 197

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 52/238 (21%), Positives = 81/238 (34%), Gaps = 75/238 (31%)

Query: 190 PQCMFFIYEYMERGSL-----FCVLRDDDEAIELNWTRR---MNIVKSVAHALSYLHHDC 241
           P CM  I EYME G L       V      A           + +   +A  + YL    
Sbjct: 93  PLCM--IMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLE--- 147

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI---------- 291
           + + VHRD+++ N L+  N    +ADFG          +R L +  Y  +          
Sbjct: 148 SLNFVHRDLATRNCLVGKNYTIKIADFGM---------SRNLYSSDYYRVQGRAPLPIRW 198

Query: 292 -ALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP 350
            A E V     T K  +++FGV   E+L                 P        Y+ L+ 
Sbjct: 199 MAWESVLLGKFTTKSDVWAFGVTLWEILT-----------LCREQP--------YEHLT- 238

Query: 351 PINQKIIQDIIL--------------------VSTIALACLRSKPKSRPTMQRISQEL 388
             +Q++I++                       +  + L C R   + RPT + I   L
Sbjct: 239 --DQQVIENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHLFL 294

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 53/181 (29%)

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY- 288
           +A  + YL      + +HRD+++ N +L  ++   VADFG          ++ + +G Y 
Sbjct: 122 IALGMEYL---SNRNFIHRDLAARNCMLREDMTVCVADFGL---------SKKIYSGDYY 169

Query: 289 ----------GYIALELVYTMVVTEKCVIYSFGVVALEVL---MGTHPG-------ELLL 328
                      +IA+E +   V T K  +++FGV   E+       +PG       + L 
Sbjct: 170 RQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLR 229

Query: 329 SLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
             +    P+  L D LY  +                    +C R+ PK RPT  ++ + L
Sbjct: 230 HGNRLKQPEDCL-DELYDLMY-------------------SCWRADPKDRPTFTKLREVL 269

Query: 389 E 389
           E
Sbjct: 270 E 270

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ-AGTY 288
           +A AL +LH   +  I++RD+   NILL+      + DFG  +   +D   +     GT 
Sbjct: 107 LALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSK-ESIDHEKKAYSFCGTV 162

Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
            Y+A E+V     T+    +SFGV+  E+L G+ P
Sbjct: 163 EYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLP 197

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 36/204 (17%)

Query: 150 CIGTGGYDSVYKA-ELPDGKVVALKKLH------HSETEDSAF---------------VV 187
            +G G +  VY   ++  G+ +A+K++        ++ E +A                V 
Sbjct: 9   LLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQ 68

Query: 188 Y-----SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCT 242
           Y       + +    EYM  GS+   L+    A+    TR+    + +   + YLH   +
Sbjct: 69  YYGCLRDDETLSIFMEYMPGGSVKDQLKAYG-ALTETVTRKYT--RQILEGVEYLH---S 122

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA---GTYGYIALELVYTM 299
             IVHRDI   NIL +S     + DFG  + L    S+ T      GT  +++ E++   
Sbjct: 123 NMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGE 182

Query: 300 VVTEKCVIYSFGVVALEVLMGTHP 323
               K  ++S G   +E+L    P
Sbjct: 183 GYGRKADVWSVGCTVVEMLTEKPP 206

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 67/287 (23%), Positives = 104/287 (36%), Gaps = 74/287 (25%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFV-------------VYSPQCMFFI 196
           +G G Y  V K      G++VA+KK    E+ED   V             +     +   
Sbjct: 9   VGEGAYGVVLKCRNKATGEIVAIKKF--KESEDDEDVKKTALREVKVLRQLRHENIVNLK 66

Query: 197 YEYMERGSLFCVLRDDDEAIELNWTRRMN---------IVKS----VAHALSYLH-HDCT 242
             +  +G L+ V     E +E      +           V+S    +  A++Y H H+  
Sbjct: 67  EAFRRKGRLYLVF----EYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHN-- 120

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR-TLQAGTYGYIALELVYTMVV 301
             I+HRDI   NIL++ +    + DFG  R L    ++  T    T  Y A EL+     
Sbjct: 121 --IIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTN 178

Query: 302 TEKCV-IYSFGVVALEVLMGT--HPG----------------------ELLLSLSSSSG- 335
             K V +++ G +  E+L G    PG                      EL  S    +G 
Sbjct: 179 YGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGV 238

Query: 336 --PKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPT 380
             P+    + L +R    ++   +           ACLR  PK R T
Sbjct: 239 AFPEPSQPESLERRYPGKVSSPALD-------FLKACLRMDPKERLT 278

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 36/199 (18%)

Query: 151 IGTGGYDSVYKAELPDGK------------VVALKKLHHSETEDSA-------FVV---- 187
           +GTG +  V+       +            V+ LK+  H   E          F++    
Sbjct: 9   VGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFW 68

Query: 188 --YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
             +  + ++ + EY+  G LF  LR+   +   + +  +     +  AL YLH   +  I
Sbjct: 69  TEHDQRFLYMLMEYVPGGELFSYLRN---SGRFSNSTGLFYASEIVCALEYLH---SKEI 122

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ-AGTYGYIALELVYTMVVTEK 304
           V+RD+   NILL+      + DFG  + L     +RT    GT  Y+A E++ +    + 
Sbjct: 123 VYRDLKPENILLDKEGHIKLTDFGFAKKL----RDRTWTLCGTPEYLAPEVIQSKGHNKA 178

Query: 305 CVIYSFGVVALEVLMGTHP 323
              ++ G++  E+L+G  P
Sbjct: 179 VDWWALGILIYEMLVGYPP 197

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 13/146 (8%)

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVRLL--DVDSSNRTLQAGTYGYIALELVYTMVVTE 303
           +HRD+++ NILL+ N    + DFG  R +  D D   +        ++A E ++  V T 
Sbjct: 195 IHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTT 254

Query: 304 KCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL- 362
           +  ++SFGV+  E+           SL +S  P + + +   +RL      +  +     
Sbjct: 255 QSDVWSFGVLLWEI----------FSLGASPYPGVQIDEEFCRRLKEGTRMRAPEYATPE 304

Query: 363 VSTIALACLRSKPKSRPTMQRISQEL 388
           + +I L C  + P+ RPT   + + L
Sbjct: 305 IYSIMLDCWHNNPEDRPTFSELVEIL 330

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 44.2 bits (104), Expect = 7e-05
 Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 25/167 (14%)

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR-LLDVDSSNRTLQAG-T 287
           VA  + YL    +   +HRD+++ N+L+  +    +ADFG  R + ++D   +T      
Sbjct: 143 VARGMEYL---ASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLP 199

Query: 288 YGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY-- 345
             ++A E ++  V T +  ++SFGV+  E+           +L  S  P I + ++    
Sbjct: 200 VKWMAPEALFDRVYTHQSDVWSFGVLLWEI----------FTLGGSPYPGIPVEELFKLL 249

Query: 346 ---QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
               R+  P N     ++ +   I   C  + P  RPT +++ ++L+
Sbjct: 250 KEGHRMDKPAN--CTHELYM---IMRECWHAVPSQRPTFKQLVEDLD 291

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 59/204 (28%), Positives = 87/204 (42%), Gaps = 42/204 (20%)

Query: 151 IGTGGYDSVYKAELP-DGKVVALKKLH-----------HSETEDSA--------FVV--- 187
           IG G +  V  A+   DGK  A+K L            H   E +         F+V   
Sbjct: 3   IGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLH 62

Query: 188 YSPQC---MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS 244
           YS Q    ++F+ +Y+  G LF  L+ +    E    R       +A AL YLH   + +
Sbjct: 63  YSFQTADKLYFVLDYVNGGELFFHLQRERSFPE---PRARFYAAEIASALGYLH---SLN 116

Query: 245 IVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ-AGTYGYIALELV----YTM 299
           I++RD+   NILL+S     + DFG  +   ++ S  T    GT  Y+A E++    Y  
Sbjct: 117 IIYRDLKPENILLDSQGHVVLTDFGLCK-EGIEHSKTTSTFCGTPEYLAPEVLRKQPYDR 175

Query: 300 VVTEKCVIYSFGVVALEVLMGTHP 323
            V   C+    G V  E+L G  P
Sbjct: 176 TVDWWCL----GAVLYEMLYGLPP 195

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 50/207 (24%), Positives = 81/207 (39%), Gaps = 47/207 (22%)

Query: 145 FHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDS-------------------- 183
           F I   IG G +  VYKA  L DG+VVALKK+   E  D+                    
Sbjct: 4   FKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPN 63

Query: 184 -----AFVVYSPQCMFFIYEYMERGSLFCVL---RDDDEAIELN--WTRRMNIVKSVAHA 233
                A  + + + +  + E  + G L  ++   +     I     W   + +      A
Sbjct: 64  VIKYLASFIENNE-LNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQL----CSA 118

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA----GTYG 289
           L ++H   +  I+HRDI   N+ + +     + D G  R      S++T  A    GT  
Sbjct: 119 LEHMH---SKRIMHRDIKPANVFITATGVVKLGDLGLGRFF----SSKTTAAHSLVGTPY 171

Query: 290 YIALELVYTMVVTEKCVIYSFGVVALE 316
           Y++ E ++      K  I+S G +  E
Sbjct: 172 YMSPERIHENGYNFKSDIWSLGCLLYE 198

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 49/167 (29%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVA-----------------------LKKLHHSETE----- 181
           IG G Y +VYKA +L  G+ VA                       LK+L   E       
Sbjct: 7   IGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRL 66

Query: 182 -DSAFVVYSPQCM--FFIYEYMERGSLFCVLRD------DDEAIELNWTRRMNIVKSVAH 232
            D      + + +    ++E++++  L   L          E I+       ++++ +  
Sbjct: 67  LDVCHGPRTDRELKLTLVFEHVDQ-DLATYLSKCPKPGLPPETIK-------DLMRQLLR 118

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS 279
            + +LH   +  IVHRD+   NIL+ S+ +  +ADFG  R+   + +
Sbjct: 119 GVDFLH---SHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMA 162

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 45/177 (25%), Positives = 65/177 (36%), Gaps = 56/177 (31%)

Query: 147 IRYC--IGTGGYDSVYKAELP------DGKVVALKKLHHSETED------------SAF- 185
           I Y   IG G +  V++A  P         +VA+K L    + D            + F 
Sbjct: 7   IEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFD 66

Query: 186 -----------VVYSPQCMFFIYEYMERGSLFCVLRD-------------------DDEA 215
                       V  P C+ F  EYM  G L   LR                        
Sbjct: 67  HPNIVKLLGVCAVGKPMCLLF--EYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNP 124

Query: 216 IELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR 272
           + L+ T ++ I K VA  ++YL        VHRD+++ N L+  N+   +ADFG  R
Sbjct: 125 LPLSCTEQLCIAKQVAAGMAYLSER---KFVHRDLATRNCLVGENMVVKIADFGLSR 178

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 26/161 (16%)

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYG 289
           +  A+SY+H      I+HRDI + NI L       + DFG  ++L  + S      GT  
Sbjct: 110 IVSAVSYIHKA---GILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPY 166

Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLM------GTHPGELLLSLSSSSGPKIMLIDI 343
           Y++ EL   +    K  I++ G V  E+L        T+P  L++        KI+    
Sbjct: 167 YMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLNLVV--------KIV---- 214

Query: 344 LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
             Q    P+      ++I +     + L+  P+ RPT   +
Sbjct: 215 --QGNYTPVVSVYSSELISLVH---SLLQQDPEKRPTADEV 250

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 35/157 (22%)

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVRLL--DVDSSNRTLQAGTYGYIALELVYTMVVTE 303
           +HRD+++ NILL+ N    + DFG  R +  D D   +        ++A E ++  V T 
Sbjct: 201 IHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTI 260

Query: 304 KCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRL------------SPP 351
           +  ++SFGV+  E+           SL +S  P + + +   +RL            +P 
Sbjct: 261 QSDVWSFGVLLWEI----------FSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPE 310

Query: 352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
           + Q +           L C   +P  RPT   + + L
Sbjct: 311 MYQTM-----------LDCWHGEPSQRPTFSELVEHL 336

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 6/131 (4%)

Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISS 252
           ++F+ EY+  G L   ++   +  E    + +     ++  L +LH      I++RD+  
Sbjct: 76  LYFVMEYVNGGDLMYHIQQVGKFKE---PQAVFYAAEISVGLFFLHRR---GIIYRDLKL 129

Query: 253 NNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGV 312
           +N++L+S     +ADFG  +   VD        GT  YIA E++      +    +++GV
Sbjct: 130 DNVMLDSEGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGV 189

Query: 313 VALEVLMGTHP 323
           +  E+L G  P
Sbjct: 190 LLYEMLAGQPP 200

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 11/152 (7%)

Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIE--LNWTRRMNIVKS 229
           LK+L H    +   V    + ++ ++E+++   L     DD E     L+ +R    +  
Sbjct: 54  LKQLRHENLVNLIEVFRRKKRLYLVFEFVDHTVL-----DDLEKYPNGLDESRVRKYLFQ 108

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYG 289
           +   + + H     +I+HRDI   NIL++ +    + DFG  R L       T    T  
Sbjct: 109 ILRGIEFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRW 165

Query: 290 YIALELVYTMVVTEKCV-IYSFGVVALEVLMG 320
           Y A EL+       + V I++ G +  E+L G
Sbjct: 166 YRAPELLVGDTKYGRAVDIWAVGCLVTEMLTG 197

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR--LLDVDSSNRTLQAGT 287
           +A  L +LH   +  I++RD+  +N++L++     +ADFG  +  +     + RT   GT
Sbjct: 110 IAIGLFFLH---SKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFG-GKTTRTF-CGT 164

Query: 288 YGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
             YIA E++      +    ++FGV+  E+L G  P
Sbjct: 165 PDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPP 200

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 34/189 (17%)

Query: 166 DGKVVALKKLHHSETEDSAFVVYSPQCMFFI---YEYMERGSLFCVLRDDDEAIELNW-- 220
           + +++AL +L+H        ++ S    + I   Y++     L+  + D+      +W  
Sbjct: 211 ENEILALGRLNHENILKIEEILRSEANTYMITQKYDF----DLYSFMYDEA----FDWKD 262

Query: 221 ------TRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL 274
                 TR   I+K +  A+ Y+H      ++HRDI   NI LN + +  + DFGT    
Sbjct: 263 RPLLKQTRA--IMKQLLCAVEYIH---DKKLIHRDIKLENIFLNCDGKIVLGDFGTAMPF 317

Query: 275 DVDSSNRTLQ-AGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM---------GTHPG 324
           + +         GT    + E++      E   I+S G++ L++L          G  PG
Sbjct: 318 EKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPG 377

Query: 325 ELLLSLSSS 333
           + LL +  S
Sbjct: 378 KQLLKIIDS 386

Length = 501

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 11/132 (8%)

Query: 192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDIS 251
           CM    E+M+ GSL  VL+      E    +   +  +V   L+YL       I+HRD+ 
Sbjct: 81  CM----EHMDGGSLDQVLKKAGRIPEQILGK---VSIAVIKGLTYLRE--KHKIMHRDVK 131

Query: 252 SNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFG 311
            +NIL+NS  E  + DFG    L +DS   +   GT  Y++ E +     + +  I+S G
Sbjct: 132 PSNILVNSRGEIKLCDFGVSGQL-IDSMANSF-VGTRSYMSPERLQGTHYSVQSDIWSMG 189

Query: 312 VVALEVLMGTHP 323
           +  +E+ +G +P
Sbjct: 190 LSLVEMAIGRYP 201

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 26/169 (15%)

Query: 226 IVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA 285
           I       L+YLH   + +++HRDI + NILL    +  +ADFG+  +    +S      
Sbjct: 130 ITHGALQGLAYLH---SHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPANSF----V 182

Query: 286 GTYGYIALELVYTMVVTE---KCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLID 342
           GT  ++A E++  M   +   K  ++S G+  +E+     P   L ++++ S        
Sbjct: 183 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPP---LFNMNAMSA------- 232

Query: 343 ILY---QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
            LY   Q  SP +      D         +CL+  P+ RPT + + + +
Sbjct: 233 -LYHIAQNESPTLQSNEWSDYF--RNFVDSCLQKIPQDRPTSEELLKHM 278

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 31/171 (18%)

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV-DSSNRTLQAGTY 288
           VA  + YL    +   VHRD+++ N +L+ +    VADFG  R  D+ D    ++   T 
Sbjct: 107 VAKGMEYL---ASKKFVHRDLAARNCMLDESFTVKVADFGLAR--DIYDKEYYSVHNHTG 161

Query: 289 G-----YIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDI 343
                 ++ALE + T   T K  ++SFGV+  E          L++  +   P +   DI
Sbjct: 162 AKLPVKWMALESLQTQKFTTKSDVWSFGVLLWE----------LMTRGAPPYPDVDSFDI 211

Query: 344 ---LYQ--RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              L Q  RL  P   +   D +    + L+C   KP+ RPT   +   +E
Sbjct: 212 TVYLLQGRRLLQP---EYCPDPLY--EVMLSCWHPKPEMRPTFSELVSRIE 257

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 6/133 (4%)

Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISS 252
           ++F+ EY+  G L   ++      E      +     +A  L +LH   +  I++RD+  
Sbjct: 76  LYFVMEYVNGGDLMYQIQQVGRFKE---PHAVFYAAEIAIGLFFLH---SKGIIYRDLKL 129

Query: 253 NNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGV 312
           +N++L+S     +ADFG  +    D        GT  YIA E++      +    ++FGV
Sbjct: 130 DNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGV 189

Query: 313 VALEVLMGTHPGE 325
           +  E+L G  P E
Sbjct: 190 LLYEMLAGQAPFE 202

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 38/150 (25%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKK-----------------------LHHSETEDSAFV 186
           IG G Y +V+KA      ++VALK+                       L H        V
Sbjct: 8   IGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDV 67

Query: 187 VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS----VAHALSYLHHDCT 242
           ++S + +  ++EY ++      L+   ++   N      IVKS    +   L++ H    
Sbjct: 68  LHSDKKLTLVFEYCDQD-----LKKYFDS--CNGDIDPEIVKSFMFQLLKGLAFCHSH-- 118

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFGTVR 272
            +++HRD+   N+L+N N E  +ADFG  R
Sbjct: 119 -NVLHRDLKPQNLLINKNGELKLADFGLAR 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 9/154 (5%)

Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISS 252
           +FF+ EY+  G L   ++   +  E            ++ AL+YLH      I++RD+  
Sbjct: 71  LFFVIEYVNGGDLMFHMQRQRKLPE---EHARFYSAEISLALNYLHER---GIIYRDLKL 124

Query: 253 NNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGV 312
           +N+LL+S     + D+G  +         +   GT  YIA E++           ++ GV
Sbjct: 125 DNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGV 184

Query: 313 VALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ 346
           +  E++ G  P ++   + SS  P     D L+Q
Sbjct: 185 LMFEMMAGRSPFDI---VGSSDNPDQNTEDYLFQ 215

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR----TLQAGTYG 289
           L Y+H      ++HRD+  +N+L+N + E  + DFG  R L    +      T    T  
Sbjct: 120 LKYIHSAN---VIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRW 176

Query: 290 YIALELVYTMV 300
           Y A EL+ ++ 
Sbjct: 177 YRAPELLLSLP 187

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 226 IVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA 285
           I       L+YLH      ++HRDI + NILL    +  +ADFG+       SS      
Sbjct: 126 ITHGALQGLAYLHSHN---MIHRDIKAGNILLTEPGQVKLADFGSASK----SSPANSFV 178

Query: 286 GTYGYIALELVYTMVVTE---KCVIYSFGVVALEV 317
           GT  ++A E++  M   +   K  ++S G+  +E+
Sbjct: 179 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIEL 213

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 13/93 (13%)

Query: 190 PQCMFFIYEYMERGSL---FCVLR-----DDDEAIELNWTRRMNIVKSVAHALSYLHHDC 241
           P CM  I EYME G L             +  + + ++++  + +   +A  + YL    
Sbjct: 93  PLCM--ITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLS--- 147

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLL 274
           + + VHRD+++ N L+  N    +ADFG  R L
Sbjct: 148 SLNFVHRDLATRNCLVGKNYTIKIADFGMSRNL 180

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 16/138 (11%)

Query: 193 MFFIYEYMERGSL-FCVLRDD--DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRD 249
           +FF+ EY+  G L F + R    DE       R       +   L +LH      I++RD
Sbjct: 71  LFFVMEYVNGGDLMFHIQRSGRFDEP------RARFYAAEIVLGLQFLHER---GIIYRD 121

Query: 250 ISSNNILLNSNLEAFVADFGTVR--LLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVI 307
           +  +N+LL+S     +ADFG  +  +L   ++  T   GT  YIA E++           
Sbjct: 122 LKLDNVLLDSEGHIKIADFGMCKEGILGGVTT-STF-CGTPDYIAPEILSYQPYGPAVDW 179

Query: 308 YSFGVVALEVLMGTHPGE 325
           ++ GV+  E+L G  P E
Sbjct: 180 WALGVLLYEMLAGQSPFE 197

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 52/224 (23%), Positives = 80/224 (35%), Gaps = 52/224 (23%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALKKLHHSE-----TEDSAFV------------------ 186
           +G G Y  V KA     GK+VA+KK+   E     T+D   V                  
Sbjct: 17  LGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNE 76

Query: 187 VYSPQCMFFIYEYMERGSLFCVL--------RDDDEAIELNWTRRMNIVKSVAHALSYLH 238
           +     M  +  Y+E   +  V+        +  D  I L  ++   I+  + + L+ LH
Sbjct: 77  IKHENIMGLVDVYVEGDFINLVMDIMASDLKKVVDRKIRLTESQVKCILLQILNGLNVLH 136

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
                  +HRD+S  NI +NS     +ADFG  R       + TL          E+   
Sbjct: 137 ---KWYFMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSK 193

Query: 299 MVV---------------TEKCVIYSFGVVALEVLMGT--HPGE 325
           +V                     ++S G +  E+L G    PGE
Sbjct: 194 VVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGE 237

Length = 335

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 6/101 (5%)

Query: 226 IVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA 285
           I  +   AL+YL  +    I+HRD+  +NILL+ N    + DFG    L VDS  +T  A
Sbjct: 112 IAVATVKALNYLKEEL--KIIHRDVKPSNILLDRNGNIKLCDFGISGQL-VDSIAKTRDA 168

Query: 286 GTYGYIALELVYTMVVTEKCV---IYSFGVVALEVLMGTHP 323
           G   Y+A E +         V   ++S G+   EV  G  P
Sbjct: 169 GCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFP 209

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 41/204 (20%)

Query: 151 IGTGGYDSVYKAELPD-GKVVALK-------KLHHSET--------------EDSAFVV- 187
           IG GG+  VY     D GK+ A+K       K+   ET               D  F+V 
Sbjct: 2   IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVC 61

Query: 188 -----YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCT 242
                ++P  + FI + M  G L   L       E        +    A  +  L H   
Sbjct: 62  MSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSE------AEMRFYAAEIILGLEHMHN 115

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA--GTYGYIALELVYTMV 300
             +V+RD+   NILL+ +    ++D G    L  D S +   A  GT+GY+A E++   V
Sbjct: 116 RFVVYRDLKPANILLDEHGHVRISDLG----LACDFSKKKPHASVGTHGYMAPEVLQKGV 171

Query: 301 VTEKCV-IYSFGVVALEVLMGTHP 323
             +     +S G +  ++L G  P
Sbjct: 172 AYDSSADWFSLGCMLFKLLRGHSP 195

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIAL 293
           L Y+H   +  +VHRD+  +NIL+N N +  + DFG  R+ D      T    T  Y A 
Sbjct: 121 LKYVH---SAGVVHRDLKPSNILINENCDLKICDFGLARIQD---PQMTGYVSTRYYRAP 174

Query: 294 ELVYT-MVVTEKCVIYSFGVVALEVLMG 320
           E++ T      +  I+S G +  E+L G
Sbjct: 175 EIMLTWQKYDVEVDIWSAGCIFAEMLEG 202

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 16/143 (11%)

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELN-------WTRRMNIVKSVAHALSYLH 238
           VV   Q    I E M RG L   LR     +E N         + + +   +A  ++YL+
Sbjct: 77  VVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLN 136

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGT----YGYIALE 294
            +     VHRD+++ N ++  +    + DFG  R  D+  ++   + G       +++ E
Sbjct: 137 AN---KFVHRDLAARNCMVAEDFTVKIGDFGMTR--DIYETDYYRKGGKGLLPVRWMSPE 191

Query: 295 LVYTMVVTEKCVIYSFGVVALEV 317
            +   V T    ++SFGVV  E+
Sbjct: 192 SLKDGVFTTYSDVWSFGVVLWEI 214

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 50/217 (23%), Positives = 96/217 (44%), Gaps = 38/217 (17%)

Query: 193 MFFIYEYMERGSLFCVLR-----------DDDEAIE--LNWTRRMNIVKSVAHALSYLHH 239
           ++ I EY  +G+L   LR           D  +  E  L++   ++    VA  + YL  
Sbjct: 93  LYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLE- 151

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFGTVR-LLDVDSSNRTLQAGT-YGYIALELVY 297
             +   +HRD+++ N+L+  +    +ADFG  R + D+D   +T        ++A E ++
Sbjct: 152 --SRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALF 209

Query: 298 TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKI---MLIDILYQ--RLSPPI 352
             V T +  ++SFG++  E+           +L  S  P I    L  +L +  R+  P 
Sbjct: 210 DRVYTHQSDVWSFGILMWEI----------FTLGGSPYPGIPVEELFKLLREGHRMDKPS 259

Query: 353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           N     ++ +   +   C  + P  RPT +++ + L+
Sbjct: 260 N--CTHELYM---LMRECWHAVPTQRPTFKQLVEALD 291

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 35/202 (17%)

Query: 151 IGTGGYDSVYKAELPDG----KVVALKKLH------------HSETE-------DSAFVV 187
           +G GGY  V++     G    K+ A+K L             H++ E          F+V
Sbjct: 4   LGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIV 63

Query: 188 ---YSPQC---MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC 241
              Y+ Q    ++ I EY+  G LF  L  + E I +  T    + + ++ AL +LH   
Sbjct: 64  DLIYAFQTGGKLYLILEYLSGGELFMHL--EREGIFMEDTACFYLSE-ISLALEHLHQQ- 119

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVV 301
              I++RD+   NILL++     + DFG  +    + +      GT  Y+A E++     
Sbjct: 120 --GIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRSGH 177

Query: 302 TEKCVIYSFGVVALEVLMGTHP 323
            +    +S G +  ++L G  P
Sbjct: 178 GKAVDWWSLGALMYDMLTGAPP 199

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 6/152 (3%)

Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           LK   H       +   +   + F+ EY+  G LF  L   +     + TR       + 
Sbjct: 49  LKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFHL-SRERVFSEDRTRFYG--AEIV 105

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI 291
            AL YLH   +  IV+RD+   N++L+ +    + DFG  +    D++      GT  Y+
Sbjct: 106 SALDYLH---SGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYL 162

Query: 292 ALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           A E++           +  GVV  E++ G  P
Sbjct: 163 APEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 194

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 33/186 (17%)

Query: 224 MNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR--------LLD 275
           ++I   +   + Y+H   +  ++HRD+  +NILL    E  + D+G           LLD
Sbjct: 116 LSIFHKICATIEYVH---SKGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLD 172

Query: 276 VD-------SSNRTLQA---GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGE 325
           +D        S+ T+     GT  Y+A E +  +  +E   IY+ GV+  ++L  + P  
Sbjct: 173 IDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFP-- 230

Query: 326 LLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDII-LVSTIALACLRSKPKSR-PTMQR 383
                    G KI   D     +  PI     ++I   +S IA+  L   P  R  ++Q 
Sbjct: 231 ----YRRKKGRKISYRD----VILSPIEVAPYREIPPFLSQIAMKALAVDPAERYSSVQE 282

Query: 384 ISQELE 389
           + Q+LE
Sbjct: 283 LKQDLE 288

Length = 932

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 41/152 (26%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALKKLH-HSE--TEDSAF-------------------VV 187
           +G G Y +VYK      G++VALK++H  +E  T  +A                    V+
Sbjct: 8   LGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVI 67

Query: 188 YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRR---MNIVKSVAHAL----SYLHHD 240
           ++   +  ++EYM++        D  + ++ +  R     N VKS  + L    ++ H +
Sbjct: 68  HTENKLMLVFEYMDK--------DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHEN 119

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVR 272
               ++HRD+   N+L+N   E  +ADFG  R
Sbjct: 120 ---RVLHRDLKPQNLLINKRGELKLADFGLAR 148

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 13/127 (10%)

Query: 195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNN 254
            + E  E G L   L+ +    E N T    +V  V+  + YL      + VHRD+++ N
Sbjct: 72  LVMELAELGPLNKFLQKNKHVTEKNITE---LVHQVSMGMKYLEET---NFVHRDLAARN 125

Query: 255 ILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYG-----YIALELVYTMVVTEKCVIYS 309
           +LL +   A ++DFG  + L  D +    +A T+G     + A E +     + K  ++S
Sbjct: 126 VLLVTQHYAKISDFGLSKALGADEN--YYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWS 183

Query: 310 FGVVALE 316
           FGV+  E
Sbjct: 184 FGVLMWE 190

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 66/293 (22%), Positives = 113/293 (38%), Gaps = 72/293 (24%)

Query: 147 IRYCIGTGGYDSVYKAE----LPDGK-----VVALKKLHHSETED-------------SA 184
           +++ +G G +  V+ AE    LP+       V ALK+   S  +D               
Sbjct: 9   LKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQH 68

Query: 185 FVVYSPQC-----MFFIYEYMERGSLFCVLR------------DDDEAIELNWTRRMNIV 227
            V +   C     +  ++EYM  G L   LR            +D    +L   + + I 
Sbjct: 69  IVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIA 128

Query: 228 KSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAG- 286
             +A  + YL    +   VHRD+++ N L+   L   + DFG  R  D+ S++     G 
Sbjct: 129 SQIASGMVYL---ASLHFVHRDLATRNCLVGQGLVVKIGDFGMSR--DIYSTDYYRVGGR 183

Query: 287 ---TYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDI 343
                 ++  E +     T +  I+SFGVV  E+   T+  +    LS++       I+ 
Sbjct: 184 TMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIF--TYGKQPWYQLSNTEA-----IEC 236

Query: 344 LYQ-------RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           + Q       R  PP    I+Q           C + +P+ R  ++ I   L+
Sbjct: 237 ITQGRELERPRTCPPEVYAIMQ----------GCWQREPQQRMVIKDIHSRLQ 279

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 42/263 (15%)

Query: 151 IGTGGYDSVYKAELPDGKVVA----------------------LKKLHHSETEDSAFVVY 188
           +G G +  V+K  L D   VA                      LK+  H        V  
Sbjct: 3   LGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCT 62

Query: 189 SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHR 248
             Q ++ + E +  G     LR   +  EL   + +      A  ++YL    + + +HR
Sbjct: 63  QRQPIYIVMELVPGGDFLSFLRKKKD--ELKTKQLVKFALDAAAGMAYLE---SKNCIHR 117

Query: 249 DISSNNILLNSNLEAFVADFGTVRLLD--VDSSNRTLQAGTYGYIALELVYTMVVTEKCV 306
           D+++ N L+  N    ++DFG  R  D  + SS+  L+     + A E +     + +  
Sbjct: 118 DLAARNCLVGENNVLKISDFGMSRQEDDGIYSSS-GLKQIPIKWTAPEALNYGRYSSESD 176

Query: 307 IYSFGVVALEVL-MGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVST 365
           ++S+G++  E   +G  P   + +  +        ++  Y R+S P  QK   D+     
Sbjct: 177 VWSYGILLWETFSLGVCPYPGMTNQQAREQ-----VEKGY-RMSCP--QKCPDDV---YK 225

Query: 366 IALACLRSKPKSRPTMQRISQEL 388
           +   C   KP++RP    + +EL
Sbjct: 226 VMQRCWDYKPENRPKFSELQKEL 248

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 46/205 (22%), Positives = 74/205 (36%), Gaps = 44/205 (21%)

Query: 151 IGTGGYDSVYKAELPD-GKVVALKKLHHS------------------ETEDSAFVV---- 187
           +G GG+  V   ++   GK+ A KKL                     E   S F+V    
Sbjct: 1   LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAY 60

Query: 188 --YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
              +   +  +   M  G L   + +  E       R +     +   L +LH      I
Sbjct: 61  AFETKDDLCLVMTLMNGGDLKYHIYNVGEPG-FPEARAIFYAAQIICGLEHLHQR---RI 116

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVRLLDV-------DSSNRTLQAGTYGYIALELVYT 298
           V+RD+   N+LL+        D G VR+ D+              +AGT GY+A E++  
Sbjct: 117 VYRDLKPENVLLD--------DHGNVRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQG 168

Query: 299 MVVTEKCVIYSFGVVALEVLMGTHP 323
            V       ++ G    E++ G  P
Sbjct: 169 EVYDFSVDWFALGCTLYEMIAGRSP 193

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 16/97 (16%)

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTL---QAGTYG 289
           AL Y+H   T ++ HRD+   NIL N++ +  + DFG  R+   D+           T  
Sbjct: 115 ALKYIH---TANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRW 171

Query: 290 YIALELV------YTMVVTEKCVIYSFGVVALEVLMG 320
           Y A EL       YT  +     I+S G +  EVL G
Sbjct: 172 YRAPELCGSFFSKYTPAID----IWSIGCIFAEVLTG 204

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 43/217 (19%), Positives = 93/217 (42%), Gaps = 38/217 (17%)

Query: 193 MFFIYEYMERGSL-------------FCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH 239
           ++ I EY  +G+L             +C         +L++   ++    VA  + YL  
Sbjct: 99  LYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYL-- 156

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFGTVR-LLDVDSSNRTLQAG-TYGYIALELVY 297
             +   +HRD+++ N+L+  +    +ADFG  R +  +D   +T        ++A E ++
Sbjct: 157 -ASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALF 215

Query: 298 TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY-----QRLSPPI 352
             + T +  ++SFGV+  E+           +L  S  P + + ++        R+  P 
Sbjct: 216 DRIYTHQSDVWSFGVLLWEI----------FTLGGSPYPGVPVEELFKLLKEGHRMDKPS 265

Query: 353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           N     ++ ++      C  + P  RPT +++ ++L+
Sbjct: 266 N--CTNELYMMMR---DCWHAVPSQRPTFKQLVEDLD 297

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 226 IVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA 285
           +V  +   L Y+H      I+HRD+   N+ +N + E  + DFG  R  D   S  T   
Sbjct: 123 LVYQMLKGLKYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQTD---SEMTGYV 176

Query: 286 GTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMG 320
            T  Y A E++   M  T+   I+S G +  E+L G
Sbjct: 177 VTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTG 212

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 18/223 (8%)

Query: 168 KVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIV 227
           + + L +  HS       V+     M  + EYM  G+L   LR  +   +L   + M ++
Sbjct: 56  EALTLGQFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKHEG--QLVAGQLMGML 113

Query: 228 KSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGT 287
             +A  + YL        VH+ ++++ +L+NS+L   ++ F  ++    ++   T+   +
Sbjct: 114 PGLASGMKYLSE---MGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKS 170

Query: 288 YG-YIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHPGELLLSLSSSSGPKIMLIDILY 345
              + A E +     +    ++SFG+V  EV+  G  P          SG  ++      
Sbjct: 171 PVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERP------YWDMSGQDVIKAVEDG 224

Query: 346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
            RL  P N        L+  + L C + +   RP   +I   L
Sbjct: 225 FRLPAPRNCP-----NLLHQLMLDCWQKERGERPRFSQIHSIL 262

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN 280
            L Y+H   + +++HRD+  +N+LLN+N +  + DFG  R+ D +  +
Sbjct: 118 GLKYIH---SANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDH 162

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 40.7 bits (95), Expect = 9e-04
 Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 31/204 (15%)

Query: 141 ATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF-------------- 185
           AT Y ++   +G G Y +VYK     +G++VALK +     E   F              
Sbjct: 4   ATSYLNLEK-LGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKH 62

Query: 186 --------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL 237
                   ++++ + + F++EYM       +++       L+       +  +   L+Y+
Sbjct: 63  ANIVLLHDIIHTKETLTFVFEYMHTDLAQYMIQHPGG---LHPYNVRLFMFQLLRGLAYI 119

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE-LV 296
           H      I+HRD+   N+L++   E  +ADFG  R   + S   + +  T  Y   + L+
Sbjct: 120 HGQ---HILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLL 176

Query: 297 YTMVVTEKCVIYSFGVVALEVLMG 320
                +    I+  G + +E+L G
Sbjct: 177 GATDYSSALDIWGAGCIFIEMLQG 200

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 49/213 (23%), Positives = 81/213 (38%), Gaps = 52/213 (24%)

Query: 145 FHIRYCIGTGGYDSVYKAELPD-GKVVALKKL-----------HHSETEDSAF------- 185
           F I   +G GGY  V+ A+  D G++VALK++            H  TE           
Sbjct: 3   FQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEW 62

Query: 186 ---VVYS---PQCMFFIYEYMERG---SLFCVLR--DDDEAIELNWTRRMNIVKSVAHAL 234
              ++Y+    + ++   EY+  G   +L   L    +D A       R  + +    A+
Sbjct: 63  LVKLLYAFQDDEYLYLAMEYVPGGDFRTLLNNLGVLSEDHA-------RFYMAEMFE-AV 114

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA----GTYGY 290
             LH       +HRD+   N L++++    + DFG        S      A    G+  Y
Sbjct: 115 DALHE---LGYIHRDLKPENFLIDASGHIKLTDFGL-------SKGIVTYANSVVGSPDY 164

Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           +A E++           +S G +  E L G  P
Sbjct: 165 MAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPP 197

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 18/96 (18%)

Query: 190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNI-----------VKSVAHALSYLH 238
           P CM  I EYME G L   L   +  IE  +T   NI              +A  + YL 
Sbjct: 91  PLCM--ITEYMENGDLNQFLSQRE--IESTFTHANNIPSVSIANLLYMAVQIASGMKYL- 145

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL 274
              + + VHRD+++ N L+ ++    +ADFG  R L
Sbjct: 146 --ASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNL 179

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 32/136 (23%)

Query: 168 KVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMER---------GSLFCVLRDDDEAIEL 218
           +V  LK L H+       ++++ +C+  ++EY++          G+L             
Sbjct: 53  EVSLLKNLKHANIVTLHDIIHTERCLTLVFEYLDSDLKQYLDNCGNLMS----------- 101

Query: 219 NWTRRMNIVK----SVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL 274
                M+ VK     +   LSY H      I+HRD+   N+L+N   E  +ADFG  R  
Sbjct: 102 -----MHNVKIFMFQLLRGLSYCHKR---KILHRDLKPQNLLINEKGELKLADFGLARAK 153

Query: 275 DVDSSNRTLQAGTYGY 290
            V +   + +  T  Y
Sbjct: 154 SVPTKTYSNEVVTLWY 169

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 9/129 (6%)

Query: 198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL 257
           E+M  GS+   L+      E N TR+    + +   +SYLH   +  IVHRDI   NIL 
Sbjct: 86  EHMPGGSIKDQLKSYGALTE-NVTRKYT--RQILEGVSYLH---SNMIVHRDIKGANILR 139

Query: 258 NSNLEAFVADFGTVRLLD---VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVA 314
           +S     + DFG  + L    +  +      GT  +++ E++       K  I+S G   
Sbjct: 140 DSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTV 199

Query: 315 LEVLMGTHP 323
           +E+L    P
Sbjct: 200 VEMLTEKPP 208

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 26/193 (13%)

Query: 198 EYMERGSLFCVLRDD---DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNN 254
           EYM  GS+   L+      E++   +TR+      +   +SYLH +    IVHRDI   N
Sbjct: 86  EYMPGGSVKDQLKAYGALTESVTRKYTRQ------ILEGMSYLHSNM---IVHRDIKGAN 136

Query: 255 ILLNSNLEAFVADFG-TVRLLDVDSSNRTLQA--GTYGYIALELVYTMVVTEKCVIYSFG 311
           IL +S     + DFG + RL  +  S   +++  GT  +++ E++       K  ++S G
Sbjct: 137 ILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLG 196

Query: 312 VVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACL 371
              +E+L    P     ++++       +  I  Q  +P +   I +     +   L C+
Sbjct: 197 CTVVEMLTEKPPWAEYEAMAA-------IFKIATQPTNPQLPSHISEH----ARDFLGCI 245

Query: 372 RSKPKSRPTMQRI 384
             + + RP+ + +
Sbjct: 246 FVEARHRPSAEEL 258

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 28/124 (22%)

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIA 292
            L Y+H   +  I+HRD+  +NI +N + E  + DFG  R  D +    T    T  Y A
Sbjct: 130 GLKYIH---SAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDDE---MTGYVATRWYRA 183

Query: 293 LELVYT-MVVTEKCVIYSFGVVALEVL---------------------MGTHPGELLLSL 330
            E++   M   +   I+S G +  E+L                     +GT   ELL  +
Sbjct: 184 PEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKI 243

Query: 331 SSSS 334
           SS S
Sbjct: 244 SSES 247

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 43/205 (20%)

Query: 151 IGTGGYDSVYKAELPD-GKVVALK-------KLHHSET--------------EDSAFVV- 187
           IG GG+  VY     D GK+ A+K       K+   ET               D  F+V 
Sbjct: 2   IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVC 61

Query: 188 -----YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS-VAHALSYLHHDC 241
                ++P  + FI + M  G L   L       E    + M    + +   L ++H+  
Sbjct: 62  MTYAFHTPDKLCFILDLMNGGDLHYHLSQHGVFSE----KEMRFYATEIILGLEHMHNRF 117

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA--GTYGYIALELVYTM 299
              +V+RD+   NILL+ +    ++D G    L  D S +   A  GT+GY+A E++   
Sbjct: 118 ---VVYRDLKPANILLDEHGHVRISDLG----LACDFSKKKPHASVGTHGYMAPEVLQKG 170

Query: 300 VVTEKCV-IYSFGVVALEVLMGTHP 323
              +     +S G +  ++L G  P
Sbjct: 171 TAYDSSADWFSLGCMLFKLLRGHSP 195

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 57/235 (24%), Positives = 84/235 (35%), Gaps = 64/235 (27%)

Query: 145 FHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLH-----------HSETE-------DSAF 185
           F +   IG G +  V+   +   G+V A+K L            H   E       DS +
Sbjct: 3   FEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPW 62

Query: 186 VV---YSPQCMFFIY---EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA--HALSYL 237
           +V   YS Q    +Y   EYM  G L  +L   D   E    R   I + V    ++  L
Sbjct: 63  IVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIRKDVFPE-ETAR-FYIAELVLALDSVHKL 120

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGT------------VRLLDVDSSNRTLQ- 284
                   +HRDI  +NIL++++    +ADFG                   +   R    
Sbjct: 121 GF------IHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVL 174

Query: 285 ----------------AGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
                            GT  YIA E++       +C  +S GV+  E+L G  P
Sbjct: 175 VRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPP 229

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 33/148 (22%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKL---HHSETEDSAF--------------------V 186
           IG G +  V KA     GK  A+K +     S  + +                      V
Sbjct: 7   IGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEV 66

Query: 187 VY--SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS 244
           ++      +  ++E M+  +L+ +++       L   R  + +  +  +L ++H +    
Sbjct: 67  LFDRKTGRLALVFELMD-MNLYELIKGRKRP--LPEKRVKSYMYQLLKSLDHMHRN---G 120

Query: 245 IVHRDISSNNILLNSNLEAFVADFGTVR 272
           I HRDI   NIL+  ++   +ADFG+ R
Sbjct: 121 IFHRDIKPENILIKDDILK-LADFGSCR 147

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 38/175 (21%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKK-----------------------LHHSETEDSAFV 186
           IG G Y  VYKA +    + +ALKK                       + H        V
Sbjct: 10  IGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDV 69

Query: 187 VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS----VAHALSYLHHDCT 242
           V+S + ++ ++EY++      + +  D + +     R+  +K+    +   ++Y H   +
Sbjct: 70  VHSEKRLYLVFEYLD----LDLKKHMDSSPDFAKNPRL--IKTYLYQILRGIAYCH---S 120

Query: 243 PSIVHRDISSNNILLNSNLEAF-VADFGTVRLLDVDSSNRTLQAGTYGYIALELV 296
             ++HRD+   N+L++    A  +ADFG  R   +     T +  T  Y A E++
Sbjct: 121 HRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEIL 175

Length = 294

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS 278
           AL+YL    +   VHRDI++ N+L++S     + DFG  R L+ +S
Sbjct: 119 ALAYLE---SKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDES 161

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 42/176 (23%)

Query: 151 IGTGGYDSVYKAELPD-GKVVALKKLHHSETEDSAF------------------------ 185
           IG G Y  V+K    + G++VA+KK   SE +D                           
Sbjct: 9   IGEGSYGVVFKCRNRETGQIVAIKKFVESE-DDPVIKKIALREIRMLKQLKHPNLVNLIE 67

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRD----DDEAIELNWTRRMNIVKSVAHALSYLH-HD 240
           V    + +  ++EY +   L  + ++     +  I         I+     A+++ H H+
Sbjct: 68  VFRRKRKLHLVFEYCDHTVLNELEKNPRGVPEHLI-------KKIIWQTLQAVNFCHKHN 120

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELV 296
           C    +HRD+   NIL+    +  + DFG  R+L     + T    T  Y A EL+
Sbjct: 121 C----IHRDVKPENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELL 172

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 47/207 (22%), Positives = 80/207 (38%), Gaps = 55/207 (26%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLH--------------------HSETED------- 182
           +G+G Y SV  A +   G+ VA+KKL                     H + E+       
Sbjct: 23  VGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDV 82

Query: 183 --SAFVVYSPQCMFFIYEYME------RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHAL 234
             SA      Q  + +  YM+       G         ++ ++        +V  +   L
Sbjct: 83  FTSAVSGDEFQDFYLVMPYMQTDLQKIMGHPL-----SEDKVQY-------LVYQMLCGL 130

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE 294
            Y+H   +  I+HRD+   N+ +N + E  + DFG  R  D + +   +   T  Y A E
Sbjct: 131 KYIH---SAGIIHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVV---TRWYRAPE 184

Query: 295 LVYT-MVVTEKCVIYSFGVVALEVLMG 320
           ++   M   +   I+S G +  E+L G
Sbjct: 185 VILNWMHYNQTVDIWSVGCIMAEMLTG 211

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 16/124 (12%)

Query: 226 IVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA 285
           ++  +   L Y+H   +  I+HRD+  +N+ +N + E  + DFG  R  D      T   
Sbjct: 125 LIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTD---DEMTGYV 178

Query: 286 GTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGT--HPG-------ELLLSLSSSSG 335
            T  Y A E++   M   +   I+S G +  E+L G    PG       +L+L L  + G
Sbjct: 179 ATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPG 238

Query: 336 PKIM 339
            +++
Sbjct: 239 AELL 242

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|133207 cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL 257
           E++E G L   LR +   + + W  ++ + + +A ALSYL      ++VH ++ + NILL
Sbjct: 96  EFVEHGPLDVCLRKEKGRVPVAW--KITVAQQLASALSYLEDK---NLVHGNVCAKNILL 150

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 274

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 18/168 (10%)

Query: 169 VVALKKLHHSETEDSAF----------VVYSPQC---MFFIYEYMERGSLFCVLRDDDEA 215
           +VA  ++ H+ TE+             + YS Q    + F+ EY   G LF  L  +   
Sbjct: 33  IVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVF 92

Query: 216 IELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD 275
            E    R       +  AL YLH +   ++V+RD+   N++L+ +    + DFG  +   
Sbjct: 93  SE---DRARFYGAEIVSALDYLHSE--KNVVYRDLKLENLMLDKDGHIKITDFGLCKEGI 147

Query: 276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
            D +      GT  Y+A E++           +  GVV  E++ G  P
Sbjct: 148 KDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 195

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 11/152 (7%)

Query: 171 ALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           A+ K H S  E  AF +        I EY E   L C L +     +        + +  
Sbjct: 63  AIVKFHASFLERDAFCI--------ITEYCEGRDLDCKLEELKHTGKT--LSENQVCEWF 112

Query: 231 AHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGY 290
              L  +H+     I+HRD+ + NI L +NL   + DFG  RLL       T   GT  Y
Sbjct: 113 IQLLLGVHYMHQRRILHRDLKAKNIFLKNNLLK-IGDFGVSRLLMGSCDLATTFTGTPYY 171

Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMGTH 322
           ++ E +       K  I+S G +  E+    H
Sbjct: 172 MSPEALKHQGYDSKSDIWSLGCILYEMCCLAH 203

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 38/151 (25%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF------------------------ 185
           I  G Y  VY+A +   G++VALKKL   E E   F                        
Sbjct: 13  IEEGTYGVVYRARDKKTGEIVALKKLKM-EKEKEGFPITSLREINILLKLQHPNIVTVKE 71

Query: 186 -VVYSPQCMFFI-YEYMERGSLFCVLRD--DDEAIELNWTRRMNIVKSVAHALSYLHHDC 241
            VV S     ++  EY+E       L+   +        +    ++  +   +++LH + 
Sbjct: 72  VVVGSNLDKIYMVMEYVEHD-----LKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDN- 125

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVR 272
              I+HRD+ ++N+LLN+     + DFG  R
Sbjct: 126 --WILHRDLKTSNLLLNNRGILKICDFGLAR 154

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 23/196 (11%)

Query: 145 FHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSAF------------VVYSPQ 191
           F I   IG G +  VY+A  L D K VALKK+   E  D+               +  P 
Sbjct: 4   FQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPN 63

Query: 192 CMFFIYEYMERGSLFCVLR-----DDDEAIE-LNWTRRM----NIVKSVAHALSYLHHDC 241
            + ++  ++E   L  VL      D  + I+     +R+     + K      S + H  
Sbjct: 64  VIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMH 123

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVV 301
           +  ++HRDI   N+ + +     + D G  R     ++      GT  Y++ E ++    
Sbjct: 124 SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGY 183

Query: 302 TEKCVIYSFGVVALEV 317
             K  I+S G +  E+
Sbjct: 184 NFKSDIWSLGCLLYEM 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 35/152 (23%), Positives = 54/152 (35%), Gaps = 47/152 (30%)

Query: 151 IGTGGYDSVYKAELPD-GKVVALK-----------KLHHSETE-------DSAFVVY--- 188
           +G G    V+   L   GK+ ALK           K+    TE       D  F+     
Sbjct: 9   LGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYA 68

Query: 189 ---SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS---------VAHALSY 236
              +   +  + +Y   G LF +L+           +    +           V  AL Y
Sbjct: 69  SFQTETYLCLVMDYCPGGELFRLLQ----------RQPGKCLSEEVARFYAAEVLLALEY 118

Query: 237 LHHDCTPSIVHRDISSNNILLNSNLEAFVADF 268
           LH      IV+RD+   NILL+ +    ++DF
Sbjct: 119 LH---LLGIVYRDLKPENILLHESGHIMLSDF 147

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 18/96 (18%)

Query: 183 SAFVV---YSPQCMFFIY---EYMERG---SLFCVLRDDDEAIELNWTRRMNIVKSVAHA 233
           S F+V   YS Q    +Y   EY+  G   SL  +    DE + + +      +  VA A
Sbjct: 63  SPFIVHLYYSLQSANNVYLVMEYLIGGDVKSLLHIYGYFDEEMAVKY------ISEVALA 116

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG 269
           L YLH      I+HRD+  +N+L+++     + DFG
Sbjct: 117 LDYLHRH---GIIHRDLKPDNMLISNEGHIKLTDFG 149

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 54/216 (25%), Positives = 82/216 (37%), Gaps = 42/216 (19%)

Query: 194 FFIYEYMERGSLFCVLRDDDEAIE----LNWTRRMNIVKSVAHALSYLHHDCTPSIVHRD 249
           + I E ME G L   LRD          L     ++I   VA    YL        +HRD
Sbjct: 75  YIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQ---MHFIHRD 131

Query: 250 ISSNNILLNSNLEAF-----VADFGTVRLLDVDSSNRTLQAGT----YGYIALELVYTMV 300
           +++ N L++           + DFG  R  D+  S+   + G       ++A E +    
Sbjct: 132 LAARNCLVSEKGYDADRVVKIGDFGLAR--DIYKSDYYRKEGEGLLPVRWMAPESLLDGK 189

Query: 301 VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ-----RLSPPIN-- 353
            T +  ++SFGV+  E+L          +L     P +   ++L       RL  P N  
Sbjct: 190 FTTQSDVWSFGVLMWEIL----------TLGQQPYPALNNQEVLQHVTAGGRLQKPENCP 239

Query: 354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            KI Q       +   C    P  RPT  RI + L+
Sbjct: 240 DKIYQ-------LMTNCWAQDPSERPTFDRIQEILQ 268

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 8/140 (5%)

Query: 184 AFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
           AF  +   C  F+ EY   G LF  L  +    E    R       +  AL YLH   + 
Sbjct: 63  AFQTHDRLC--FVMEYANGGELFFHLSRERVFTE---ERARFYGAEIVSALEYLH---SR 114

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTE 303
            +V+RDI   N++L+ +    + DFG  +    D +      GT  Y+A E++       
Sbjct: 115 DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGR 174

Query: 304 KCVIYSFGVVALEVLMGTHP 323
               +  GVV  E++ G  P
Sbjct: 175 AVDWWGLGVVMYEMMCGRLP 194

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 23/147 (15%)

Query: 192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDIS 251
           CM  + EY+E G    +L++   A+ ++   RM   ++V  AL YLH      IVHRD+ 
Sbjct: 77  CM--VMEYVEGGDCATLLKNIG-ALPVD-MARMYFAETVL-ALEYLH---NYGIVHRDLK 128

Query: 252 SNNILLNSNLEAFVADFG---------TVRLLD--VDSSNRTLQ----AGTYGYIALELV 296
            +N+L+ S     + DFG         T  L +  ++   R        GT  YIA E++
Sbjct: 129 PDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVI 188

Query: 297 YTMVVTEKCVIYSFGVVALEVLMGTHP 323
                 +    ++ G++  E L+G  P
Sbjct: 189 LRQGYGKPVDWWAMGIILYEFLVGCVP 215

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 14/155 (9%)

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYG 289
           +A AL YLH      I+HRD+ + N+ L       V D G  R+L+      +   GT  
Sbjct: 111 IAMALQYLHEK---HILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPY 167

Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS 349
           Y++ EL        K  +++ G    E+    H         ++     ++  I+  +L 
Sbjct: 168 YMSPELFSNKPYNYKSDVWALGCCVYEMATLKHA-------FNAKDMNSLVYRIIEGKL- 219

Query: 350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
           PP+ +    +  L   IA   L  +P+ RP+++ I
Sbjct: 220 PPMPKDYSPE--LGELIA-TMLSKRPEKRPSVKSI 251

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 225 NIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL 273
           ++++     L +LH +C   IVHRD+   NIL+ S  +  +ADFG  R+
Sbjct: 112 DLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGQVKLADFGLARI 157

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 226 IVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD--VDSSNRTL 283
           I + +  AL+YLH      I+HRD+ + NI L+    A + DFG    LD   D+     
Sbjct: 190 IQRRLLEALAYLHGR---GIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYG 246

Query: 284 QAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVL 318
            +GT    + EL+       K  I+S G+V  E+ 
Sbjct: 247 WSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMS 281

Length = 392

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 38.5 bits (89), Expect = 0.004
 Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 9/129 (6%)

Query: 198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL 257
           EYM  GS+   L+      E N TRR    + +   +SYLH +    IVHRDI   NIL 
Sbjct: 86  EYMPGGSIKDQLKAYGALTE-NVTRRYT--RQILQGVSYLHSNM---IVHRDIKGANILR 139

Query: 258 NSNLEAFVADFG-TVRLLDVDSSNRTLQA--GTYGYIALELVYTMVVTEKCVIYSFGVVA 314
           +S     + DFG + R+  +  S   +++  GT  +++ E++       K  ++S     
Sbjct: 140 DSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTV 199

Query: 315 LEVLMGTHP 323
           +E+L    P
Sbjct: 200 VEMLTEKPP 208

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	412
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
KOG3653	534	consensus Transforming growth factor beta/activin	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
KOG2052	513	consensus Activin A type IB receptor, serine/threo	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
KOG1989	738	consensus ARK protein kinase family [Signal transd	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
KOG0577	948	consensus Serine/threonine protein kinase [Signal	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
KOG0596	677	consensus Dual specificity; serine/threonine and t	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
KOG0584	632	consensus Serine/threonine protein kinase [General	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
KOG0696	683	consensus Serine/threonine protein kinase [Signal	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	100.0
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.98
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.98
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.98
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.98
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.98
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.98
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.98
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.97
KOG0586	596	consensus Serine/threonine protein kinase [General	99.97
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.97
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.97
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.97
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.97
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.97
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.97
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.97
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.97
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.97
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.97
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.96
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.96
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.96
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.96
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.96
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.95
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.95
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.95
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.95
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.94
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.94
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.94
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.94
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.93
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.93
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.93
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.92
KOG1152	772	consensus Signal transduction serine/threonine kin	99.91
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.9
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.88
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.86
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.85
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.85
PRK09188	365	serine/threonine protein kinase; Provisional	99.85
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.84
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.83
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.83
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.81
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.8
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.79
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.79
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.79
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.77
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.76
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.75
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.74
smart00090	237	RIO RIO-like kinase.	99.72
PRK12274	218	serine/threonine protein kinase; Provisional	99.69
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.69
PRK14879	211	serine/threonine protein kinase; Provisional	99.63
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.61
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.61
PRK10345	210	hypothetical protein; Provisional	99.59
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.59
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.46
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.43
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.41
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.39
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.27
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.21
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.2
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.1
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.07
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	99.06
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.99
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.93
PLN03150	623	hypothetical protein; Provisional	98.9
KOG1243	690	consensus Protein kinase [General function predict	98.87
KOG3087	229	consensus Serine/threonine protein kinase [General	98.85
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.81
COG4248	637	Uncharacterized protein with protein kinase and he	98.78
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.66
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.63
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.54
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.45
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.37
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.26
KOG1235	538	consensus Predicted unusual protein kinase [Genera	98.24
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.23
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.19
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.16
PRK09902	216	hypothetical protein; Provisional	98.02
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.79
KOG0576	829	consensus Mitogen-activated protein kinase kinase	97.65
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.5
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.45
PLN03150	623	hypothetical protein; Provisional	97.43
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	97.43
PF01636	239	APH: Phosphotransferase enzyme family This family	97.27
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	97.1
KOG2268	465	consensus Serine/threonine protein kinase [Signal	96.96
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	96.89
PRK05231	319	homoserine kinase; Provisional	96.83
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	96.82
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	96.8
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	96.78
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	96.63
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	96.51
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	96.41
PLN02876	822	acyl-CoA dehydrogenase	96.38
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.36
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.33
PRK10593	297	hypothetical protein; Provisional	96.32
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	96.02
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.91
KOG2270	520	consensus Serine/threonine protein kinase involved	95.74
PRK09550	401	mtnK methylthioribose kinase; Reviewed	95.7
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	95.67
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	95.51
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	94.31
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	93.08
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	93.05
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	92.94
KOG1236	565	consensus Predicted unusual protein kinase [Genera	92.82
PRK06148	1013	hypothetical protein; Provisional	92.8
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	92.2
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.69
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	91.11
COG2334	331	Putative homoserine kinase type II (protein kinase	90.61
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	90.56
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	90.47
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	90.08
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	89.79

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-52  Score=404.57  Aligned_cols=262  Identities=35%  Similarity=0.552  Sum_probs=216.9

Q ss_pred             CccccHHHHHHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEec---------------------cCCccccceEEEe
Q 042435          130 DGKILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL---------------------HHSETEDSAFVVY  188 (412)
Q Consensus       130 ~~~~~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l---------------------~~~~~~~~~~~~~  188 (412)
                      .+.|++++|..||++|...++||+|+||.||+|.+.+|+.||||++                     +|+|+....++|.
T Consensus        62 ~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC~  141 (361)
T KOG1187|consen   62 LRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYCL  141 (361)
T ss_pred             cceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEEe
Confidence            4578999999999999999999999999999999999999999964                     5677777788899


Q ss_pred             cCc-eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEee
Q 042435          189 SPQ-CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVAD  267 (412)
Q Consensus       189 ~~~-~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~D  267 (412)
                      +.+ ..+||||||++|+|.++|+..... .++|.+|++||.++|+||+|||+.+.++|+||||||+|||+|+++++||+|
T Consensus       142 e~~~~~~LVYEym~nGsL~d~L~~~~~~-~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsD  220 (361)
T KOG1187|consen  142 EGGEHRLLVYEYMPNGSLEDHLHGKKGE-PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSD  220 (361)
T ss_pred             cCCceEEEEEEccCCCCHHHHhCCCCCC-CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccC
Confidence            888 599999999999999999987654 689999999999999999999999999999999999999999999999999


Q ss_pred             cCCccccCCCCCCcccc-cccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccc--------ccccCCCCcc
Q 042435          268 FGTVRLLDVDSSNRTLQ-AGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLL--------SLSSSSGPKI  338 (412)
Q Consensus       268 fGla~~~~~~~~~~~~~-~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~--------~~~~~~~~~~  338 (412)
                      ||+|+............ .||.+|+|||+...+..+.|+|||||||+|+|++||+.|.+...        .+........
T Consensus       221 FGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~  300 (361)
T KOG1187|consen  221 FGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEG  300 (361)
T ss_pred             ccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCc
Confidence            99997654312222222 89999999999999999999999999999999999998876321        0000111112


Q ss_pred             hhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          339 MLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      .+.+++|+.+...... ..++...+..++.+|++.+|++||+|.||+++|+.+..
T Consensus       301 ~~~eiiD~~l~~~~~~-~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~~  354 (361)
T KOG1187|consen  301 KLREIVDPRLKEGEYP-DEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGILS  354 (361)
T ss_pred             chhheeCCCccCCCCC-hHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhcc
Confidence            4556666666521111 11566679999999999999999999999999966554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.9e-51  Score=446.37  Aligned_cols=374  Identities=25%  Similarity=0.404  Sum_probs=260.6

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC-CCcCC-CCcccccCcCCCCCCC--CCCcccccCCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT-YLRDN-PPKSFVGNKGLCGHVQ--GFLSCFQRHRLA   76 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~-~~~~~-~~~~~~gn~~lcg~~~--~~~~c~~~~~~~   76 (412)
                      ..|++|||+.| ++|.+|. +.++++|..+|+|+|+|+|++|. +.+.. ++++|.||+++||...  +..+|....+ .
T Consensus       547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~-~  625 (968)
T PLN00113        547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRK-T  625 (968)
T ss_pred             ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccccc-c
Confidence            45788888888 8888877 77888899999999999999997 55666 7889999999998643  3356753322 2


Q ss_pred             ccceeeehhhHHHHHHHHHHHHHHHHHhhcccchhhhHhhhccCCCc-eeee--ccCccccHHHHHHhhcCcccceeeee
Q 042435           77 PSFILSVKIFLPLTPILAFTIFGFILLLKGKSENLKLVTRAAKNGDV-FSVW--NYDGKILYENLIDATEYFHIRYCIGT  153 (412)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~l~~~~~~f~~~~~lG~  153 (412)
                      ...++.+++++++++++++++++++++++++..+.+..  ....+.. ....  .....++++++.   ..|...++||+
T Consensus       626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ig~  700 (968)
T PLN00113        626 PSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRV--ENEDGTWELQFFDSKVSKSITINDIL---SSLKEENVISR  700 (968)
T ss_pred             ceeeeehhHHHHHHHHHHHHHHHHHHHHhhhccccccc--ccccccccccccccccchhhhHHHHH---hhCCcccEEcc
Confidence            22222222222222222222222222222221111111  1111110 0000  011234444443   45777889999


Q ss_pred             cCceEEEEEEe-CCCcEEEEEec-----------------cCCccccceEEEecCceEEEEEEeccCCceeeeeccCccc
Q 042435          154 GGYDSVYKAEL-PDGKVVALKKL-----------------HHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEA  215 (412)
Q Consensus       154 G~~g~Vy~~~~-~~~~~vAvK~l-----------------~~~~~~~~~~~~~~~~~~~lv~ey~~~gsL~~~l~~~~~~  215 (412)
                      |+||.||+|.. .+++.||||++                 +|+++.+..+++.+.+..++||||+++|+|.++++     
T Consensus       701 G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~-----  775 (968)
T PLN00113        701 GKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLR-----  775 (968)
T ss_pred             CCCeeEEEEEECCCCcEEEEEEccCCccccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHh-----
Confidence            99999999987 57899999964                 58888888888999999999999999999999985     


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCccccccccccccccc
Q 042435          216 IELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALEL  295 (412)
Q Consensus       216 ~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~  295 (412)
                       .++|.++.+++.|+++||+|||+.+.++|+|||+||+||+++.++.+++. ||.+......    ....+|+.|+|||+
T Consensus       776 -~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~----~~~~~t~~y~aPE~  849 (968)
T PLN00113        776 -NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTD----TKCFISSAYVAPET  849 (968)
T ss_pred             -cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccccC----CCccccccccCccc
Confidence             38999999999999999999998877899999999999999999888876 6665433211    12367899999999


Q ss_pred             ccCcccCcccccHHHHHHHHHHHhCCCCccccccccc-------CCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHH
Q 042435          296 VYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS-------SSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIAL  368 (412)
Q Consensus       296 ~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  368 (412)
                      +.+..++.++|||||||++|||+||+.||+.......       ..........+.++.+.... ....++...+.+++.
T Consensus       850 ~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~  928 (968)
T PLN00113        850 RETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDV-SVNQNEIVEVMNLAL  928 (968)
T ss_pred             ccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCC-CccHHHHHHHHHHHH
Confidence            9999999999999999999999999999863211000       00001111222233332221 122344556889999


Q ss_pred             hcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          369 ACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       369 ~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                      +||+.||++||||+|+++.|+++...
T Consensus       929 ~Cl~~~P~~RPt~~evl~~L~~~~~~  954 (968)
T PLN00113        929 HCTATDPTARPCANDVLKTLESASRS  954 (968)
T ss_pred             hhCcCCchhCcCHHHHHHHHHHhhcc
Confidence            99999999999999999999988654

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=5.1e-47  Score=364.37  Aligned_cols=233  Identities=32%  Similarity=0.485  Sum_probs=195.3

Q ss_pred             cceeeeecCceEEEEEEeCCCcEEEEEe-----------------------ccCCccccceEEEecCc-eEEEEEEeccC
Q 042435          147 IRYCIGTGGYDSVYKAELPDGKVVALKK-----------------------LHHSETEDSAFVVYSPQ-CMFFIYEYMER  202 (412)
Q Consensus       147 ~~~~lG~G~~g~Vy~~~~~~~~~vAvK~-----------------------l~~~~~~~~~~~~~~~~-~~~lv~ey~~~  202 (412)
                      ..+.||+|+||+||+|.+.....||||+                       ++|+|++...++|..+. ..++|||||++
T Consensus        45 ~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~  124 (362)
T KOG0192|consen   45 IEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPG  124 (362)
T ss_pred             hhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCC
Confidence            3455999999999999996555599994                       57899999999999888 79999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCC-cEEeCCCCCCEEecCCC-cEEEeecCCccccCCCCCC
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS-IVHRDISSNNILLNSNL-EAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~-ivHrDlkp~NILl~~~~-~~kl~DfGla~~~~~~~~~  280 (412)
                      |+|.++++.. ....++|..+++++.|||+||.|||++   + ||||||||+|||++.++ ++||+|||+++........
T Consensus       125 GsL~~~l~~~-~~~~l~~~~~l~~aldiArGm~YLH~~---~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~  200 (362)
T KOG0192|consen  125 GSLSVLLHKK-RKRKLPLKVRLRIALDIARGMEYLHSE---GPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTS  200 (362)
T ss_pred             CcHHHHHhhc-ccCCCCHHHHHHHHHHHHHHHHHHhcC---CCeeecccChhhEEEcCCCCEEEECCCccceeecccccc
Confidence            9999999874 223699999999999999999999998   6 99999999999999997 9999999999876554344


Q ss_pred             ccccccccccccccccc--CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          281 RTLQAGTYGYIALELVY--TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~--~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      .+...||+.|||||++.  ...|+.|+|||||||++|||+||+.||...       ........+.....+++.+..   
T Consensus       201 ~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~-------~~~~~~~~v~~~~~Rp~~p~~---  270 (362)
T KOG0192|consen  201 MTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDL-------APVQVASAVVVGGLRPPIPKE---  270 (362)
T ss_pred             ccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCC-------CHHHHHHHHHhcCCCCCCCcc---
Confidence            45578999999999999  568999999999999999999999999843       222334444555555554443   


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      ....+..++.+||+.||+.||++.+++..|+.+..
T Consensus       271 ~~~~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~  305 (362)
T KOG0192|consen  271 CPPHLSSLMERCWLVDPSRRPSFLEIVSRLESIMS  305 (362)
T ss_pred             CCHHHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHH
Confidence            33347888999999999999999999999987644

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=7.5e-46  Score=341.50  Aligned_cols=236  Identities=27%  Similarity=0.346  Sum_probs=189.1

Q ss_pred             cccHHHHHHhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEe
Q 042435          132 KILYENLIDATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVY  188 (412)
Q Consensus       132 ~~~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~  188 (412)
                      .++..||.       ..+.||+|..|+|||+.++ +++.+|+|.+                      +++.++..++.++
T Consensus        75 ~i~~~dle-------~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~  147 (364)
T KOG0581|consen   75 GISLSDLE-------RLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFY  147 (364)
T ss_pred             ccCHHHhh-------hhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEE
Confidence            35555554       3468999999999999774 6899999976                      3566777777888


Q ss_pred             cCc-eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHh-CCCCCcEEeCCCCCCEEecCCCcEEEe
Q 042435          189 SPQ-CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH-DCTPSIVHRDISSNNILLNSNLEAFVA  266 (412)
Q Consensus       189 ~~~-~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~-~~~~~ivHrDlkp~NILl~~~~~~kl~  266 (412)
                      .+. ...++||||.+|||++++...+   .+++...-+|+.+|++||.|||+ +   +|+||||||+|||++..+++|||
T Consensus       148 ~~~~~isI~mEYMDgGSLd~~~k~~g---~i~E~~L~~ia~~VL~GL~YLh~~~---~IIHRDIKPsNlLvNskGeVKic  221 (364)
T KOG0581|consen  148 SNGEEISICMEYMDGGSLDDILKRVG---RIPEPVLGKIARAVLRGLSYLHEER---KIIHRDIKPSNLLVNSKGEVKIC  221 (364)
T ss_pred             eCCceEEeehhhcCCCCHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHhhcc---CeeeccCCHHHeeeccCCCEEec
Confidence            888 5999999999999999987653   48899999999999999999996 5   99999999999999999999999


Q ss_pred             ecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhh
Q 042435          267 DFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ  346 (412)
Q Consensus       267 DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~  346 (412)
                      |||.++.+...  ...+..||..|||||.+.+..|+.++||||||+.++|+.+|+.||...   .........+...+-.
T Consensus       222 DFGVS~~lvnS--~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~---~~~~~~~~~Ll~~Iv~  296 (364)
T KOG0581|consen  222 DFGVSGILVNS--IANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPP---NPPYLDIFELLCAIVD  296 (364)
T ss_pred             cccccHHhhhh--hcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCc---CCCCCCHHHHHHHHhc
Confidence            99999977554  345678999999999999999999999999999999999999998732   0000111112222222


Q ss_pred             ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..++..+..  ....++..++..|+++||.+|||+.|+++|
T Consensus       297 ~ppP~lP~~--~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~H  335 (364)
T KOG0581|consen  297 EPPPRLPEG--EFSPEFRSFVSCCLRKDPSERPSAKQLLQH  335 (364)
T ss_pred             CCCCCCCcc--cCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            222322232  234458899999999999999999999876

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-44  Score=346.62  Aligned_cols=234  Identities=24%  Similarity=0.381  Sum_probs=195.1

Q ss_pred             cccceeeeecCceEEEEEEeCCCcEEEEEe--------------------ccCCccccceEEEecCceEEEEEEeccCCc
Q 042435          145 FHIRYCIGTGGYDSVYKAELPDGKVVALKK--------------------LHHSETEDSAFVVYSPQCMFFIYEYMERGS  204 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~--------------------l~~~~~~~~~~~~~~~~~~~lv~ey~~~gs  204 (412)
                      +...+.||+|-||+||.|.++....||+|.                    ++|+++++..++|...+.++||||||++|+
T Consensus       208 l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~Gs  287 (468)
T KOG0197|consen  208 LKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGS  287 (468)
T ss_pred             HHHHHHhcCCccceEEEEEEcCCCcccceEEeccccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCc
Confidence            344578999999999999998777898884                    578999999999999899999999999999


Q ss_pred             eeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC-ccc
Q 042435          205 LFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-RTL  283 (412)
Q Consensus       205 L~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~-~~~  283 (412)
                      |.++|+... ...+...+.+.++.|||+|++||+++   ++|||||..+|||++++..+||+|||+|+....+... ...
T Consensus       288 Ll~yLr~~~-~~~l~~~~Ll~~a~qIaeGM~YLes~---~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~  363 (468)
T KOG0197|consen  288 LLDYLRTRE-GGLLNLPQLLDFAAQIAEGMAYLESK---NYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEG  363 (468)
T ss_pred             HHHHhhhcC-CCccchHHHHHHHHHHHHHHHHHHhC---CccchhhhhhheeeccCceEEEcccccccccCCCceeecCC
Confidence            999999733 23588999999999999999999999   9999999999999999999999999999954433322 223


Q ss_pred             ccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          284 QAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       284 ~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ..-++.|.|||.+..+.++.|||||||||+||||+| |+.||..+        ......+.+....+.+.+..++.   .
T Consensus       364 ~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~m--------sn~ev~~~le~GyRlp~P~~CP~---~  432 (468)
T KOG0197|consen  364 GKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYPGM--------SNEEVLELLERGYRLPRPEGCPD---E  432 (468)
T ss_pred             CCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCCCC--------CHHHHHHHHhccCcCCCCCCCCH---H
Confidence            344678999999999999999999999999999999 88887632        12234455555555444444444   4


Q ss_pred             HHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          363 VSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      +.+++..||+.+|++|||++.+...|++...
T Consensus       433 vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~  463 (468)
T KOG0197|consen  433 VYELMKSCWHEDPEDRPTFETLREVLEDFFT  463 (468)
T ss_pred             HHHHHHHHhhCCcccCCCHHHHHHHHHHhhh
Confidence            8899999999999999999999999988754

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.1e-43  Score=344.96  Aligned_cols=227  Identities=26%  Similarity=0.409  Sum_probs=195.2

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEe------------------------ccCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKK------------------------LHHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~------------------------l~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ..|...+.||+|||+.||.++. ..|+.||+|.                        ++|+|++.....+.+.+.+|+|.
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            5699999999999999999987 8899999995                        47899999999999999999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      |+|++|+|..+++...   .+++..+..++.||+.||.|||++   +|+|||||..|+++++++++||+|||+|..+..+
T Consensus        98 ELC~~~sL~el~Krrk---~ltEpEary~l~QIv~GlkYLH~~---~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~  171 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRK---PLTEPEARYFLRQIVEGLKYLHSL---GIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYD  171 (592)
T ss_pred             EecCCccHHHHHHhcC---CCCcHHHHHHHHHHHHHHHHHHhc---CceecccchhheeecCcCcEEecccceeeeecCc
Confidence            9999999999888443   699999999999999999999999   9999999999999999999999999999998877


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                      .....+.+|||.|+|||++.....+..+||||+||++|.|++|++||+..       .-......+.......|  .   
T Consensus       172 ~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk-------~vkety~~Ik~~~Y~~P--~---  239 (592)
T KOG0575|consen  172 GERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETK-------TVKETYNKIKLNEYSMP--S---  239 (592)
T ss_pred             ccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccc-------hHHHHHHHHHhcCcccc--c---
Confidence            77777889999999999999999999999999999999999999999821       11112222222222221  1   


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .-.....+|+.++|+.||.+|||+++|+.+
T Consensus       240 ~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h  269 (592)
T KOG0575|consen  240 HLSAEAKDLIRKLLRPNPSERPSLDEVLDH  269 (592)
T ss_pred             ccCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            122237789999999999999999999976

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-43  Score=326.06  Aligned_cols=222  Identities=24%  Similarity=0.369  Sum_probs=183.5

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ..++|++.++||+|+||+||.++. ++++.+|+|.|                        +|+.++.....+++++.+|+
T Consensus        23 ~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLyl  102 (357)
T KOG0598|consen   23 GPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYL  102 (357)
T ss_pred             ChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEE
Confidence            356799999999999999999966 46899999965                        56677777777899999999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      |+||+.||.|..+|+..+   .++.....-++.+|+.||.|||++   +||||||||+|||+|.+|.++|+|||+++...
T Consensus       103 Vld~~~GGeLf~hL~~eg---~F~E~~arfYlaEi~lAL~~LH~~---gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~  176 (357)
T KOG0598|consen  103 VLDYLNGGELFYHLQREG---RFSEDRARFYLAEIVLALGYLHSK---GIIYRDLKPENILLDEQGHIKLTDFGLCKEDL  176 (357)
T ss_pred             EEeccCCccHHHHHHhcC---CcchhHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHeeecCCCcEEEeccccchhcc
Confidence            999999999999998665   588888888999999999999999   99999999999999999999999999999655


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      .........+||+.|||||++.+..|+..+|.||+|+++|||++|.+||...       ........+.......+ +..
T Consensus       177 ~~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~-------~~~~~~~~I~~~k~~~~-p~~  248 (357)
T KOG0598|consen  177 KDGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAE-------DVKKMYDKILKGKLPLP-PGY  248 (357)
T ss_pred             cCCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCc-------cHHHHHHHHhcCcCCCC-Ccc
Confidence            5555556689999999999999999999999999999999999999999732       11222233333332221 111


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCC
Q 042435          356 IIQDIILVSTIALACLRSKPKSRP  379 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RP  379 (412)
                      ..   ....+++.+.+..||++|-
T Consensus       249 ls---~~ardll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  249 LS---EEARDLLKKLLKRDPRQRL  269 (357)
T ss_pred             CC---HHHHHHHHHHhccCHHHhc
Confidence            22   2377899999999999995

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=2e-43  Score=328.20  Aligned_cols=178  Identities=27%  Similarity=0.441  Sum_probs=161.5

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEe-----------------------ccCCccccceEEEecCceEEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKK-----------------------LHHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~-----------------------l~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ...+|...+.||+|+||+||+|+++ ++..||||.                       ++|++++.....+..++.+|||
T Consensus         8 ~~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lV   87 (429)
T KOG0595|consen    8 VVGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLV   87 (429)
T ss_pred             ccccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEE
Confidence            3467888899999999999999874 689999995                       3788999999999999999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC------CcEEEeecCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN------LEAFVADFGT  270 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~------~~~kl~DfGl  270 (412)
                      ||||.+|||.++++..+   .++..+...++.|+|.||++||++   +||||||||.|||++..      -.+||+|||+
T Consensus        88 MEyC~gGDLs~yi~~~~---~l~e~t~r~Fm~QLA~alq~L~~~---~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGf  161 (429)
T KOG0595|consen   88 MEYCNGGDLSDYIRRRG---RLPEATARHFMQQLASALQFLHEN---NIIHRDLKPQNILLSTTARNDTSPVLKIADFGF  161 (429)
T ss_pred             EEeCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCcceEEeccCCCCCCCceEEecccch
Confidence            99999999999999875   589999999999999999999999   99999999999999764      5689999999


Q ss_pred             ccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcc
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGE  325 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~  325 (412)
                      |+.+.... .....+|++.|||||++....|+.|+|+||.|+++||+++|+.||+
T Consensus       162 AR~L~~~~-~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~  215 (429)
T KOG0595|consen  162 ARFLQPGS-MAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFD  215 (429)
T ss_pred             hhhCCchh-HHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCcc
Confidence            99887433 3356799999999999999999999999999999999999999998

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.2e-43  Score=327.64  Aligned_cols=232  Identities=26%  Similarity=0.308  Sum_probs=186.9

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEe----------------------------ccCCccccceEEEecCc
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKK----------------------------LHHSETEDSAFVVYSPQ  191 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~----------------------------l~~~~~~~~~~~~~~~~  191 (412)
                      ..+.|.+.+.||+|+||.|-+|.. ++|+.||||.                            ++||++++....+..++
T Consensus       170 ~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~d  249 (475)
T KOG0615|consen  170 FNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPD  249 (475)
T ss_pred             hcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCC
Confidence            445678889999999999999954 6899999994                            46788888888888999


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC---CcEEEeec
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN---LEAFVADF  268 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~---~~~kl~Df  268 (412)
                      ..|+||||++||+|.+.+-...   .+....-..++.|++.|+.|||++   ||+||||||+|||+..+   ..+||+||
T Consensus       250 s~YmVlE~v~GGeLfd~vv~nk---~l~ed~~K~~f~Qll~avkYLH~~---GI~HRDiKPeNILl~~~~e~~llKItDF  323 (475)
T KOG0615|consen  250 SSYMVLEYVEGGELFDKVVANK---YLREDLGKLLFKQLLTAVKYLHSQ---GIIHRDIKPENILLSNDAEDCLLKITDF  323 (475)
T ss_pred             ceEEEEEEecCccHHHHHHhcc---ccccchhHHHHHHHHHHHHHHHHc---CcccccCCcceEEeccCCcceEEEeccc
Confidence            9999999999999999886654   366666788999999999999999   99999999999999755   78999999


Q ss_pred             CCccccCCCCCCcccccccccccccccccCcc---cCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchh-hHHh
Q 042435          269 GTVRLLDVDSSNRTLQAGTYGYIALELVYTMV---VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIML-IDIL  344 (412)
Q Consensus       269 Gla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~-~~~~  344 (412)
                      |+|+... ...-..+.+||+.|.|||++.+..   +..+.|+||+||+||-+++|..||...       .....+ .++.
T Consensus       324 GlAK~~g-~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~-------~~~~sl~eQI~  395 (475)
T KOG0615|consen  324 GLAKVSG-EGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEE-------YTDPSLKEQIL  395 (475)
T ss_pred             chhhccc-cceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccc-------cCCccHHHHHh
Confidence            9999876 333445679999999999997654   234789999999999999999999832       222212 2333


Q ss_pred             hhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          345 YQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..+... .+..+.+-..+..+++.++|..||++|||+.|++++
T Consensus       396 ~G~y~f-~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~h  437 (475)
T KOG0615|consen  396 KGRYAF-GPLQWDRISEEALDLINWMLVVDPENRPSADEALNH  437 (475)
T ss_pred             cCcccc-cChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhcC
Confidence            333322 223344445568999999999999999999999876

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=8.4e-43  Score=334.14  Aligned_cols=237  Identities=29%  Similarity=0.448  Sum_probs=196.9

Q ss_pred             cccHHHHHHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEe--------------ccCCccccceEEEecCceEEEEE
Q 042435          132 KILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKK--------------LHHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       132 ~~~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~--------------l~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      .+.|++|.+.       +-||+|+.|.||+|++ .++.||||+              ++|+|+..+.++|....++||||
T Consensus       120 eiPFe~IsEL-------eWlGSGaQGAVF~Grl-~netVAVKKV~elkETdIKHLRkLkH~NII~FkGVCtqsPcyCIiM  191 (904)
T KOG4721|consen  120 EIPFEEISEL-------EWLGSGAQGAVFLGRL-HNETVAVKKVRELKETDIKHLRKLKHPNIITFKGVCTQSPCYCIIM  191 (904)
T ss_pred             cCCHHHhhhh-------hhhccCcccceeeeec-cCceehhHHHhhhhhhhHHHHHhccCcceeeEeeeecCCceeEEee
Confidence            5667776543       5699999999999999 568899995              57999999999999999999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      |||+.|.|+.+|+..+   .++-.....+..+||.|+.|||.+   .|||||||+-||||..+..+||+|||-++.....
T Consensus       192 EfCa~GqL~~VLka~~---~itp~llv~Wsk~IA~GM~YLH~h---KIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~  265 (904)
T KOG4721|consen  192 EFCAQGQLYEVLKAGR---PITPSLLVDWSKGIAGGMNYLHLH---KIIHRDLKSPNILISYDDVVKISDFGTSKELSDK  265 (904)
T ss_pred             eccccccHHHHHhccC---ccCHHHHHHHHHHhhhhhHHHHHh---hHhhhccCCCceEeeccceEEeccccchHhhhhh
Confidence            9999999999998776   578888899999999999999999   9999999999999999999999999999876544


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                       ...-.++||..|||||++...++++|.|||||||+||||+||..||.+..+.+       .+-.+-...+..+.+...+
T Consensus       266 -STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssA-------IIwGVGsNsL~LpvPstcP  337 (904)
T KOG4721|consen  266 -STKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSA-------IIWGVGSNSLHLPVPSTCP  337 (904)
T ss_pred             -hhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccchhe-------eEEeccCCcccccCcccCc
Confidence             44456789999999999999999999999999999999999999998543211       1111111222223333333


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      +   .+.-|+.+||+..|..||++.+++.+|+=..+
T Consensus       338 ~---GfklL~Kqcw~sKpRNRPSFrqil~HldIa~p  370 (904)
T KOG4721|consen  338 D---GFKLLLKQCWNSKPRNRPSFRQILLHLDIASP  370 (904)
T ss_pred             h---HHHHHHHHHHhcCCCCCccHHHHHHHHhhcCH
Confidence            3   36678899999999999999999999986654

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.2e-43  Score=314.61  Aligned_cols=237  Identities=24%  Similarity=0.301  Sum_probs=188.7

Q ss_pred             cCcccceeeeecCceEEEEEE-eCCCcEEEEEec-----------------------cCCccccceE-EEe-cCceEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKL-----------------------HHSETEDSAF-VVY-SPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~-~~~~~~vAvK~l-----------------------~~~~~~~~~~-~~~-~~~~~~lv  196 (412)
                      .+|++.++||+|+||+|||+. ..+|..+|.|.+                       +|+|++.... .+. +.+.++||
T Consensus        19 ~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlniv   98 (375)
T KOG0591|consen   19 ADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIV   98 (375)
T ss_pred             HHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHH
Confidence            357788999999999999994 578999999954                       6778777655 233 34458999


Q ss_pred             EEeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCC--cEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          197 YEYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPS--IVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~--ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ||||..|+|.+.++... ....++...+++++.|+++||..+|+. -+.  |+||||||.||+++.++.+||+|||+++.
T Consensus        99 mE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~-~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~  177 (375)
T KOG0591|consen   99 MELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSK-IPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRF  177 (375)
T ss_pred             HHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhcc-ccccceeeccCcchheEEcCCCceeeccchhHhH
Confidence            99999999999887543 234689999999999999999999984 224  99999999999999999999999999999


Q ss_pred             cCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccc
Q 042435          274 LDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN  353 (412)
Q Consensus       274 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (412)
                      +..........+|||.||+||.+.+..|+.||||||+||++|||+.-+.||...        .-..+..-+.+.-.++.+
T Consensus       178 l~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~--------n~~~L~~KI~qgd~~~~p  249 (375)
T KOG0591|consen  178 LSSKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD--------NLLSLCKKIEQGDYPPLP  249 (375)
T ss_pred             hcchhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc--------cHHHHHHHHHcCCCCCCc
Confidence            887766667789999999999999999999999999999999999999999732        111122222222222222


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      .  .-....+.+|+..|+..||+.||+...++..+..
T Consensus       250 ~--~~YS~~l~~li~~ci~vd~~~RP~t~~~v~di~~  284 (375)
T KOG0591|consen  250 D--EHYSTDLRELINMCIAVDPEQRPDTVPYVQDIQS  284 (375)
T ss_pred             H--HHhhhHHHHHHHHHccCCcccCCCcchHHHHHHH
Confidence            1  2234458889999999999999996666555554

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-41  Score=324.90  Aligned_cols=232  Identities=23%  Similarity=0.375  Sum_probs=191.3

Q ss_pred             HHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-------------------------cCCccccceEEEecCce
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-------------------------HHSETEDSAFVVYSPQC  192 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~  192 (412)
                      ....++|..++.||+|+|++||+|+. ..++.+|||++                         .|+.+.+....+.+...
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            45567899999999999999999965 57999999976                         35556666666889999


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      +|+|+||+++|+|.++++..+   .++......++.+|+.||+|||++   |||||||||+|||+|+|+++||+|||.|+
T Consensus       149 LYFvLe~A~nGdll~~i~K~G---sfde~caR~YAAeIldAleylH~~---GIIHRDlKPENILLd~dmhikITDFGsAK  222 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIKKYG---SFDETCARFYAAEILDALEYLHSN---GIIHRDLKPENILLDKDGHIKITDFGSAK  222 (604)
T ss_pred             eEEEEEecCCCcHHHHHHHhC---cchHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeEcCCCcEEEeeccccc
Confidence            999999999999999998765   588888889999999999999999   99999999999999999999999999999


Q ss_pred             ccCCCCCC-------------cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcch
Q 042435          273 LLDVDSSN-------------RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIM  339 (412)
Q Consensus       273 ~~~~~~~~-------------~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~  339 (412)
                      .+......             ....+||..|.+||++.....+..+|+|+|||+||+|+.|++||...       .+-..
T Consensus       223 ~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~-------Neyli  295 (604)
T KOG0592|consen  223 ILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAA-------NEYLI  295 (604)
T ss_pred             cCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccc-------cHHHH
Confidence            87542211             14578999999999999999999999999999999999999999832       22233


Q ss_pred             hhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          340 LIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      +..++.-....+  +...+   .+.+|+.+.|..||++|+|..+|-+|.
T Consensus       296 FqkI~~l~y~fp--~~fp~---~a~dLv~KLLv~dp~~Rlt~~qIk~Hp  339 (604)
T KOG0592|consen  296 FQKIQALDYEFP--EGFPE---DARDLIKKLLVRDPSDRLTSQQIKAHP  339 (604)
T ss_pred             HHHHHHhcccCC--CCCCH---HHHHHHHHHHccCccccccHHHHhhCc
Confidence            444443333222  22222   377899999999999999999987763

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=6.3e-41  Score=324.56  Aligned_cols=239  Identities=23%  Similarity=0.318  Sum_probs=181.6

Q ss_pred             hcCcccceeeeecCceEEEEEEe------CCCcEEEEEec-----------------------cCCccccceEEEec-Cc
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL------PDGKVVALKKL-----------------------HHSETEDSAFVVYS-PQ  191 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~------~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~-~~  191 (412)
                      .++|++.+.||+|+||.||+|.+      .+++.||||.+                       +|+++......+.. .+
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~   85 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPNG   85 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCCC
Confidence            46789999999999999999964      23578999976                       35555555555554 34


Q ss_pred             eEEEEEEeccCCceeeeeccCcc---------------------------------------------------------
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDE---------------------------------------------------------  214 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~---------------------------------------------------------  214 (412)
                      ..++||||+++|+|.+++.....                                                         
T Consensus        86 ~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (338)
T cd05102          86 PLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDD  165 (338)
T ss_pred             ceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccc
Confidence            58999999999999988764311                                                         


Q ss_pred             --cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC--Ccccccccccc
Q 042435          215 --AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS--NRTLQAGTYGY  290 (412)
Q Consensus       215 --~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~--~~~~~~gt~~y  290 (412)
                        ...+++.....++.|+++||+|||+.   +|+||||||+|||++.++.+||+|||+++.......  ......++..|
T Consensus       166 ~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y  242 (338)
T cd05102         166 LWKSPLTMEDLICYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKW  242 (338)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccc
Confidence              12478889999999999999999998   999999999999999999999999999986533221  11233466789


Q ss_pred             cccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHh
Q 042435          291 IALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALA  369 (412)
Q Consensus       291 ~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  369 (412)
                      +|||++.+..++.++|||||||++|||++ |..||....       ........+........+..   ....+.+++.+
T Consensus       243 ~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~l~~li~~  312 (338)
T cd05102         243 MAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQ-------INEEFCQRLKDGTRMRAPEN---ATPEIYRIMLA  312 (338)
T ss_pred             cCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCC-------ccHHHHHHHhcCCCCCCCCC---CCHHHHHHHHH
Confidence            99999998899999999999999999997 999986321       11112222221111111111   12347899999


Q ss_pred             cCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          370 CLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       370 Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      ||+.||++|||+.|+++.|+++..
T Consensus       313 cl~~dp~~RPs~~el~~~l~~~~~  336 (338)
T cd05102         313 CWQGDPKERPTFSALVEILGDLLQ  336 (338)
T ss_pred             HccCChhhCcCHHHHHHHHHHHHh
Confidence            999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.2e-41  Score=339.30  Aligned_cols=240  Identities=24%  Similarity=0.345  Sum_probs=196.3

Q ss_pred             cCcccceeeeecCceEEEEEEeC------CCcEEEEEe----------------------ccCCccccceEEEecCceEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP------DGKVVALKK----------------------LHHSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~----------------------l~~~~~~~~~~~~~~~~~~~  194 (412)
                      .+....+.||+|+||+||+|+..      +.+.||||.                      ++|+|+++..++|..++..+
T Consensus       486 ~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~  565 (774)
T KOG1026|consen  486 SDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPLC  565 (774)
T ss_pred             hheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeE
Confidence            34455678999999999999763      457899995                      46899999999999999999


Q ss_pred             EEEEeccCCceeeeeccCcc-----------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcE
Q 042435          195 FIYEYMERGSLFCVLRDDDE-----------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEA  263 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~-----------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~  263 (412)
                      +|+|||..|||.++|+...+           ..+|+-.+.+.||.|||.|++||-++   .+|||||..+|+|+.++..+
T Consensus       566 MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~---~FVHRDLATRNCLVge~l~V  642 (774)
T KOG1026|consen  566 MVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSH---HFVHRDLATRNCLVGENLVV  642 (774)
T ss_pred             EEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---cccccchhhhhceeccceEE
Confidence            99999999999999975421           12388999999999999999999998   89999999999999999999


Q ss_pred             EEeecCCccccCCCCCCc--ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchh
Q 042435          264 FVADFGTVRLLDVDSSNR--TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIML  340 (412)
Q Consensus       264 kl~DfGla~~~~~~~~~~--~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~  340 (412)
                      ||+|||+++..-..+..+  ....-.++|||||.+..++||++||||||||+|||+++ |+.||..       ...++.+
T Consensus       643 KIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~g-------lSn~EVI  715 (774)
T KOG1026|consen  643 KISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYG-------LSNQEVI  715 (774)
T ss_pred             EecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccc-------cchHHHH
Confidence            999999999765443332  12234679999999999999999999999999999998 9999873       2333344


Q ss_pred             hHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCC
Q 042435          341 IDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKK  396 (412)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  396 (412)
                      ..+-...+. +.++   .++..+.+|+..||+.+|++||+++||-..|++.....+
T Consensus       716 e~i~~g~lL-~~Pe---~CP~~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~s~  767 (774)
T KOG1026|consen  716 ECIRAGQLL-SCPE---NCPTEVYSLMLECWNENPKRRPSFKEIHSRLQAWAQASP  767 (774)
T ss_pred             HHHHcCCcc-cCCC---CCCHHHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhcCc
Confidence            444444442 2223   334459999999999999999999999999998876544

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-41  Score=323.08  Aligned_cols=230  Identities=24%  Similarity=0.327  Sum_probs=189.8

Q ss_pred             hcCcccceeeeecCceEEEEEE-eCCCcEEEEEecc---------------------CCccccceEEEecCceEEEEEEe
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLH---------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~-~~~~~~vAvK~l~---------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ...|..-.+||+|+.|.||.|. ..+++.||||++.                     |+|++.....+...+.+|+||||
T Consensus       272 ~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEy  351 (550)
T KOG0578|consen  272 RSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEY  351 (550)
T ss_pred             hhhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEee
Confidence            3457777899999999999995 4678999999873                     55555554445566899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      |++|+|.+++....    ++..++..|++++++||+|||.+   +|+|||||.+|||++.++.+||+|||++..+.....
T Consensus       352 m~ggsLTDvVt~~~----~~E~qIA~Icre~l~aL~fLH~~---gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~  424 (550)
T KOG0578|consen  352 MEGGSLTDVVTKTR----MTEGQIAAICREILQGLKFLHAR---GIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQS  424 (550)
T ss_pred             cCCCchhhhhhccc----ccHHHHHHHHHHHHHHHHHHHhc---ceeeeccccceeEeccCCcEEEeeeeeeeccccccC
Confidence            99999999987654    89999999999999999999999   999999999999999999999999999998887777


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      .+...+||+.|||||+.....|++|.||||||++++||+-|.+||-..       .+-..+ ..+...-.+. .......
T Consensus       425 KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE-------~PlrAl-yLIa~ng~P~-lk~~~kl  495 (550)
T KOG0578|consen  425 KRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNE-------NPLRAL-YLIATNGTPK-LKNPEKL  495 (550)
T ss_pred             ccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCC-------ChHHHH-HHHhhcCCCC-cCCcccc
Confidence            788889999999999999999999999999999999999999998622       111111 1222222222 1222333


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+.+++.+||..|+.+||++.|++++
T Consensus       496 S~~~kdFL~~cL~~dv~~RasA~eLL~H  523 (550)
T KOG0578|consen  496 SPELKDFLDRCLVVDVEQRASAKELLEH  523 (550)
T ss_pred             CHHHHHHHHHHhhcchhcCCCHHHHhcC
Confidence            4458999999999999999999999986

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-41  Score=326.39  Aligned_cols=246  Identities=22%  Similarity=0.353  Sum_probs=188.7

Q ss_pred             HHHHHHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEec-----------------------cCCccccceEEEecCc
Q 042435          135 YENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-----------------------HHSETEDSAFVVYSPQ  191 (412)
Q Consensus       135 ~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~  191 (412)
                      .++.....+.+.+...||+|.||+||+|+|.  -.||||.+                       +|.|+.-+-+.|..+.
T Consensus       384 ~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~wh--GdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~  461 (678)
T KOG0193|consen  384 LEEWEIPPEEVLLGERIGSGSFGTVYRGRWH--GDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPP  461 (678)
T ss_pred             ccccccCHHHhhccceeccccccceeecccc--cceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCc
Confidence            3445555566677889999999999999995  35899976                       3455554445555555


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                      . .||+.+|++.+|+.+++..+.  .++..+...||.|||+|+.|||.+   +|||||||+.||++.+++++||+|||++
T Consensus       462 ~-AIiTqwCeGsSLY~hlHv~et--kfdm~~~idIAqQiaqGM~YLHAK---~IIHrDLKSnNIFl~~~~kVkIgDFGLa  535 (678)
T KOG0193|consen  462 L-AIITQWCEGSSLYTHLHVQET--KFDMNTTIDIAQQIAQGMDYLHAK---NIIHRDLKSNNIFLHEDLKVKIGDFGLA  535 (678)
T ss_pred             e-eeeehhccCchhhhhccchhh--hhhHHHHHHHHHHHHHhhhhhhhh---hhhhhhccccceEEccCCcEEEecccce
Confidence            5 999999999999999998764  588999999999999999999999   9999999999999999999999999998


Q ss_pred             cccCC--CCCCccccccccccccccccc---CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhh
Q 042435          272 RLLDV--DSSNRTLQAGTYGYIALELVY---TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ  346 (412)
Q Consensus       272 ~~~~~--~~~~~~~~~gt~~y~aPE~~~---~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~  346 (412)
                      .....  .........|+..|||||++.   ..+|++.+||||||+++|||+||..||...       ..+..+-.+-..
T Consensus       536 tvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~-------~~dqIifmVGrG  608 (678)
T KOG0193|consen  536 TVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQ-------NRDQIIFMVGRG  608 (678)
T ss_pred             eeeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCC-------ChhheEEEeccc
Confidence            64322  222334557889999999986   457999999999999999999999998721       111111111111


Q ss_pred             ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCC
Q 042435          347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMK  395 (412)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  395 (412)
                      .+.+............+.+|+..||..++++||.+.+|+..|+++.+..
T Consensus       609 ~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~~~  657 (678)
T KOG0193|consen  609 YLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLPSL  657 (678)
T ss_pred             ccCccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhhcc
Confidence            1222222222333445899999999999999999999999998887743

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-41  Score=314.99  Aligned_cols=237  Identities=25%  Similarity=0.337  Sum_probs=182.7

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEecc---------------------CCccccceEEEecCc--eEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH---------------------HSETEDSAFVVYSPQ--CMFFIY  197 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~---------------------~~~~~~~~~~~~~~~--~~~lv~  197 (412)
                      ..++...+.||+|+||.||++... +|+..|||...                     |+++++..+.....+  ..++.|
T Consensus        16 ~~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~m   95 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFM   95 (313)
T ss_pred             cchhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeee
Confidence            345777899999999999999775 49999999653                     444444444322233  689999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC-CCcEEEeecCCccccCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS-NLEAFVADFGTVRLLDV  276 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~-~~~~kl~DfGla~~~~~  276 (412)
                      ||+++|+|.+++.....  .++...+..+..||++||+|||++   +|+||||||+|||++. ++.+||+|||+++....
T Consensus        96 Ey~~~GsL~~~~~~~g~--~l~E~~v~~ytr~iL~GL~ylHs~---g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~  170 (313)
T KOG0198|consen   96 EYAPGGSLSDLIKRYGG--KLPEPLVRRYTRQILEGLAYLHSK---GIVHCDIKPANILLDPSNGDVKLADFGLAKKLES  170 (313)
T ss_pred             eccCCCcHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCcccceEEEeCCCCeEEeccCcccccccc
Confidence            99999999999987653  489999999999999999999998   9999999999999999 79999999999987663


Q ss_pred             CC---CCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          277 DS---SNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       277 ~~---~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ..   .......||+.|||||++..+ ....++|||||||++.||+||+.||...      ......+..+......|..
T Consensus       171 ~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~------~~~~~~~~~ig~~~~~P~i  244 (313)
T KOG0198|consen  171 KGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF------FEEAEALLLIGREDSLPEI  244 (313)
T ss_pred             ccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhh------cchHHHHHHHhccCCCCCC
Confidence            11   223456899999999999853 3445999999999999999999998742      1111112222222323333


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      +....+   ...+++.+|+..||++|||+++++++.--..
T Consensus       245 p~~ls~---~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~~~  281 (313)
T KOG0198|consen  245 PDSLSD---EAKDFLRKCFKRDPEKRPTAEELLEHPFLKQ  281 (313)
T ss_pred             CcccCH---HHHHHHHHHhhcCcccCcCHHHHhhChhhhc
Confidence            333333   3778999999999999999999999875544

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=2e-41  Score=303.26  Aligned_cols=239  Identities=22%  Similarity=0.298  Sum_probs=182.7

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      +.|+...++|+|+||.|||++.+ +|+.||||++                       +|+|.+....++.....++||+|
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE   81 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFE   81 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEee
Confidence            45777789999999999999885 5999999975                       67788777788888999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      ||+..-|. -|.....  .++.....+++.|+++|+.|+|++   +++||||||+|||++.++.+||||||+|+.+....
T Consensus        82 ~~dhTvL~-eLe~~p~--G~~~~~vk~~l~Q~l~ai~~cHk~---n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pg  155 (396)
T KOG0593|consen   82 YCDHTVLH-ELERYPN--GVPSELVKKYLYQLLKAIHFCHKN---NCIHRDIKPENILITQNGVVKLCDFGFARTLSAPG  155 (396)
T ss_pred             ecchHHHH-HHHhccC--CCCHHHHHHHHHHHHHHhhhhhhc---CeecccCChhheEEecCCcEEeccchhhHhhcCCc
Confidence            99874444 3433322  378889999999999999999999   99999999999999999999999999999988666


Q ss_pred             CCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc------CCCCc-chhhHHhhhc---
Q 042435          279 SNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS------SSGPK-IMLIDILYQR---  347 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~------~~~~~-~~~~~~~~~~---  347 (412)
                      ...+..+.|.+|+|||.+.+ ..|+...||||.||++.||++|..-|.....+..      ...+- ....+++...   
T Consensus       156 d~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F  235 (396)
T KOG0593|consen  156 DNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFF  235 (396)
T ss_pred             chhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCce
Confidence            66777889999999999987 6799999999999999999999987652211100      00000 0001111110   


Q ss_pred             --c--CC-----ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          348 --L--SP-----PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       348 --~--~~-----~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                        +  +.     +.....+.....+++++..|++.||.+|++.+|++.+
T Consensus       236 ~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~H  284 (396)
T KOG0593|consen  236 HGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLHH  284 (396)
T ss_pred             eeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhcC
Confidence              0  00     0111111222348899999999999999999998754

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-40  Score=308.86  Aligned_cols=235  Identities=25%  Similarity=0.354  Sum_probs=188.1

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------------cCCccccceEEEecCceEEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .++|++.++||.|..++||+|+. +.++.||||++                      +|+|+......+..+..+|+||.
T Consensus        25 ~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmp  104 (516)
T KOG0582|consen   25 AKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMP  104 (516)
T ss_pred             ccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeeh
Confidence            35799999999999999999965 67899999975                      68999998888999999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      ||.+||+.++++..-.. .++...+..|++++++||.|||.+   |.||||||+.|||++++|.+||+|||.+-.+....
T Consensus       105 fMa~GS~ldIik~~~~~-Gl~E~~Ia~iLre~LkaL~YLH~~---G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G  180 (516)
T KOG0582|consen  105 FMAGGSLLDIIKTYYPD-GLEEASIATILREVLKALDYLHQN---GHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSG  180 (516)
T ss_pred             hhcCCcHHHHHHHHccc-cccHHHHHHHHHHHHHHHHHHHhc---CceecccccccEEEcCCCcEEEcCceeeeeecccC
Confidence            99999999998765332 388999999999999999999999   99999999999999999999999999876554332


Q ss_pred             CC---c-ccccccccccccccccC--cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCc-
Q 042435          279 SN---R-TLQAGTYGYIALELVYT--MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP-  351 (412)
Q Consensus       279 ~~---~-~~~~gt~~y~aPE~~~~--~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  351 (412)
                      ..   . ....||+.|||||++..  ..|+.|+||||||++..||.+|..||...       .+...+..-+....+.+ 
T Consensus       181 ~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~-------pPmkvLl~tLqn~pp~~~  253 (516)
T KOG0582|consen  181 DRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKY-------PPMKVLLLTLQNDPPTLL  253 (516)
T ss_pred             ceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccC-------ChHHHHHHHhcCCCCCcc
Confidence            21   1 45589999999999643  46999999999999999999999999832       12222222222222100 


Q ss_pred             ----cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          352 ----INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       352 ----~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                          ...........+.+++..|+..||++|||+++++++
T Consensus       254 t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh  293 (516)
T KOG0582|consen  254 TSGLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLKH  293 (516)
T ss_pred             cccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhcc
Confidence                011111223358899999999999999999999875

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-41  Score=336.69  Aligned_cols=237  Identities=28%  Similarity=0.405  Sum_probs=197.7

Q ss_pred             cccceeeeecCceEEEEEEeC----CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEE
Q 042435          145 FHIRYCIGTGGYDSVYKAELP----DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~----~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ..+.++||.|.||+||+|+++    ....||||.|                      .|+|+.+..+++.....++||+|
T Consensus       631 i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiTE  710 (996)
T KOG0196|consen  631 VKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIITE  710 (996)
T ss_pred             eEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEhh
Confidence            456789999999999999884    3568999954                      69999999999999999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      ||+||+|+.+|+.+..  .+++.+...++++||.|+.||-+.   ++|||||..+|||++.+..+|++|||+++.+..+.
T Consensus       711 yMENGsLDsFLR~~DG--qftviQLVgMLrGIAsGMkYLsdm---~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~  785 (996)
T KOG0196|consen  711 YMENGSLDSFLRQNDG--QFTVIQLVGMLRGIASGMKYLSDM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP  785 (996)
T ss_pred             hhhCCcHHHHHhhcCC--ceEeehHHHHHHHHHHHhHHHhhc---CchhhhhhhhheeeccceEEEeccccceeecccCC
Confidence            9999999999998874  489999999999999999999999   99999999999999999999999999999886654


Q ss_pred             CCc-ccccc--cccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          279 SNR-TLQAG--TYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       279 ~~~-~~~~g--t~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      ... +...|  .++|.|||.+...++|.+||||||||++||.++ |..||.++       ..+. ....+.+..+-|.+.
T Consensus       786 ~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdm-------SNQd-VIkaIe~gyRLPpPm  857 (996)
T KOG0196|consen  786 EAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDM-------SNQD-VIKAIEQGYRLPPPM  857 (996)
T ss_pred             CccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCccccc-------chHH-HHHHHHhccCCCCCC
Confidence            322 33333  468999999999999999999999999999887 99998743       2222 233333333332222


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCCC
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKG  397 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~~  397 (412)
                         ++...+.+|++.||++|-.+||++.||+.+|+++...+..
T Consensus       858 ---DCP~aL~qLMldCWqkdR~~RP~F~qiV~~lDklIrnP~S  897 (996)
T KOG0196|consen  858 ---DCPAALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRNPNS  897 (996)
T ss_pred             ---CCcHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCchh
Confidence               3444589999999999999999999999999998765543

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-40  Score=322.55  Aligned_cols=222  Identities=23%  Similarity=0.335  Sum_probs=184.8

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEeccCCcccc-------------------------ceEEEecCceEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHHSETED-------------------------SAFVVYSPQCMF  194 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~~~~~~-------------------------~~~~~~~~~~~~  194 (412)
                      ..++|...++||+|+||+|+++..+ +++.+|||.++...+..                         ....+++++++|
T Consensus       366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~  445 (694)
T KOG0694|consen  366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLF  445 (694)
T ss_pred             cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEE
Confidence            4578999999999999999999875 58899999886554443                         333367889999


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      .||||+.||++..+.+..    .++.....-++..|+.||.|||++   +||+||||.+|||+|.+|.+||+|||+++..
T Consensus       446 fvmey~~Ggdm~~~~~~~----~F~e~rarfyaAev~l~L~fLH~~---~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~  518 (694)
T KOG0694|consen  446 FVMEYVAGGDLMHHIHTD----VFSEPRARFYAAEVVLGLQFLHEN---GIIYRDLKLDNLLLDTEGHVKIADFGLCKEG  518 (694)
T ss_pred             EEEEecCCCcEEEEEecc----cccHHHHHHHHHHHHHHHHHHHhc---CceeeecchhheEEcccCcEEeccccccccc
Confidence            999999999977776654    389999999999999999999999   9999999999999999999999999999976


Q ss_pred             CCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          275 DVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       275 ~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      .......++.+||+.|||||++.+..|+...|.|||||+||||+.|..||.       ...+++....++......|.  
T Consensus       519 m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~-------gddEee~FdsI~~d~~~yP~--  589 (694)
T KOG0694|consen  519 MGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFP-------GDDEEEVFDSIVNDEVRYPR--  589 (694)
T ss_pred             CCCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCC-------CCCHHHHHHHHhcCCCCCCC--
Confidence            545556678899999999999999999999999999999999999999997       23444445555544443332  


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCH
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTM  381 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~  381 (412)
                      ....   +..+++.+.+.++|++|-.+
T Consensus       590 ~ls~---ea~~il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  590 FLSK---EAIAIMRRLLRKNPEKRLGS  613 (694)
T ss_pred             cccH---HHHHHHHHHhccCcccccCC
Confidence            2222   37789999999999999865

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-40  Score=313.18  Aligned_cols=241  Identities=21%  Similarity=0.309  Sum_probs=187.5

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------------c-CCccccceEEEecCc-eEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------H-HSETEDSAFVVYSPQ-CMFF  195 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~-~~~~~~~~~~~~~~~-~~~l  195 (412)
                      ..++|.+.++||.|+||.||+|+. .+|+.||||+|                      . |+++.....++.+.+ .+++
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~f   87 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYF   87 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEee
Confidence            456788899999999999999965 56999999965                      3 888888888888887 9999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      |||||+. +|++++++++  ..++..++..|+.||.+||+|+|.+   |+.|||+||+|||+..+..+||+|||+|+...
T Consensus        88 VfE~Md~-NLYqLmK~R~--r~fse~~irnim~QilqGL~hiHk~---GfFHRDlKPENiLi~~~~~iKiaDFGLARev~  161 (538)
T KOG0661|consen   88 VFEFMDC-NLYQLMKDRN--RLFSESDIRNIMYQILQGLAHIHKH---GFFHRDLKPENILISGNDVIKIADFGLAREVR  161 (538)
T ss_pred             eHHhhhh-hHHHHHhhcC--CcCCHHHHHHHHHHHHHHHHHHHhc---CcccccCChhheEecccceeEecccccccccc
Confidence            9999965 9999998874  4699999999999999999999999   99999999999999999999999999999775


Q ss_pred             CCCCCccccccccccccccccc-CcccCcccccHHHHHHHHHHHhCCCCccccccc-------------ccCCCCc-chh
Q 042435          276 VDSSNRTLQAGTYGYIALELVY-TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSL-------------SSSSGPK-IML  340 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~-~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~-------------~~~~~~~-~~~  340 (412)
                      ... ..+..+.|.+|+|||++. .+.|+.+.||||+|||++|+.+-+.-|.....+             ......+ ..+
T Consensus       162 Skp-PYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~L  240 (538)
T KOG0661|consen  162 SKP-PYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNL  240 (538)
T ss_pred             cCC-CcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHH
Confidence            433 345568899999999875 567999999999999999999988766422110             0011111 111


Q ss_pred             hHHhhhccCCc----cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          341 IDILYQRLSPP----INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       341 ~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      ...+.-.++.-    ...-.........+++.+|+++||.+|||+.|.+++-
T Consensus       241 a~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~p  292 (538)
T KOG0661|consen  241 ASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQHP  292 (538)
T ss_pred             HHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcCc
Confidence            11221111110    0111112334588999999999999999999999874

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.1e-39  Score=310.08  Aligned_cols=238  Identities=26%  Similarity=0.336  Sum_probs=184.0

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecC--ceEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSP--QCMFF  195 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~--~~~~l  195 (412)
                      .+.|+..++||+|+||.||||+. .+|+.||+|++                       +|+|+.....+..+.  ..+||
T Consensus       116 ~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYl  195 (560)
T KOG0600|consen  116 ADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYL  195 (560)
T ss_pred             hHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEE
Confidence            34577778999999999999954 78999999964                       688888888877765  78999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      |+|||++ ||..++....  ..++..++..++.|++.||+|+|++   +|+|||||.+|||||.++.+||+|||+|+++.
T Consensus       196 VFeYMdh-DL~GLl~~p~--vkft~~qIKc~mkQLl~Gl~~cH~~---gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~  269 (560)
T KOG0600|consen  196 VFEYMDH-DLSGLLSSPG--VKFTEPQIKCYMKQLLEGLEYCHSR---GVLHRDIKGSNILIDNNGVLKIADFGLARFYT  269 (560)
T ss_pred             EEecccc-hhhhhhcCCC--cccChHHHHHHHHHHHHHHHHHhhc---CeeeccccccceEEcCCCCEEeccccceeecc
Confidence            9999987 8988887643  4699999999999999999999999   99999999999999999999999999999887


Q ss_pred             CCCCC-cccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccc---------ccC----CCCcchh
Q 042435          276 VDSSN-RTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSL---------SSS----SGPKIML  340 (412)
Q Consensus       276 ~~~~~-~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~---------~~~----~~~~~~~  340 (412)
                      ..... .+..+-|.+|+|||.+.+. .|+.+.|+||.||||.||++|+..|..-..+         ..+    .++...+
T Consensus       270 ~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kL  349 (560)
T KOG0600|consen  270 PSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKL  349 (560)
T ss_pred             CCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccC
Confidence            66543 5667789999999999875 6999999999999999999999988632111         000    0000000


Q ss_pred             h--HHhhhccCCccchhhH----HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          341 I--DILYQRLSPPINQKII----QDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       341 ~--~~~~~~~~~~~~~~~~----~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      -  ..+.+  ..+......    ......++|+..+|..||.+|.|+.++++.
T Consensus       350 P~~~~~kp--~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~s  400 (560)
T KOG0600|consen  350 PHATIFKP--QQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQS  400 (560)
T ss_pred             CcccccCC--CCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhcC
Confidence            0  00000  000001111    112347789999999999999999998864

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=3e-39  Score=317.22  Aligned_cols=240  Identities=22%  Similarity=0.301  Sum_probs=185.1

Q ss_pred             HHhhcCcccceeeeecCceEEEEEEe------CCCcEEEEEec-----------------------cCCccccceEEEec
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAEL------PDGKVVALKKL-----------------------HHSETEDSAFVVYS  189 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~~------~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~  189 (412)
                      ....++|++.+.||+|+||.||+|.+      .++..||||.+                       +|+++......+..
T Consensus        31 ~~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~  110 (375)
T cd05104          31 EFPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTV  110 (375)
T ss_pred             ccchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeecc
Confidence            33456799999999999999999964      24668999975                       35666666677888


Q ss_pred             CceEEEEEEeccCCceeeeeccCcc-------------------------------------------------------
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDE-------------------------------------------------------  214 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~-------------------------------------------------------  214 (412)
                      .+..++||||+++|+|.++++....                                                       
T Consensus       111 ~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  190 (375)
T cd05104         111 GGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVR  190 (375)
T ss_pred             CCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccc
Confidence            8899999999999999888754210                                                       


Q ss_pred             -----------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          215 -----------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       215 -----------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                                       ...++|..+.+++.|+++||+|||+.   +++||||||+|||++.+..+||+|||+++.....
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~  267 (375)
T cd05104         191 SGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIRND  267 (375)
T ss_pred             cceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCchhhEEEECCCcEEEecCccceeccCc
Confidence                             12478999999999999999999998   9999999999999999999999999999865433


Q ss_pred             CCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          278 SSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       278 ~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      ...  .....++..|+|||++.+..++.++|||||||++|||++ |..||...       .........+........+.
T Consensus       268 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~-------~~~~~~~~~~~~~~~~~~~~  340 (375)
T cd05104         268 SNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGM-------PVDSKFYKMIKEGYRMLSPE  340 (375)
T ss_pred             ccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCC-------CchHHHHHHHHhCccCCCCC
Confidence            221  122345678999999999999999999999999999998 88888632       11112223333222221111


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      ..   ...+.+++.+||+.||++|||+.||++.|++.
T Consensus       341 ~~---~~~l~~li~~cl~~dP~~RPs~~eil~~l~~~  374 (375)
T cd05104         341 CA---PSEMYDIMKSCWDADPLKRPTFKQIVQLIEQQ  374 (375)
T ss_pred             CC---CHHHHHHHHHHccCChhHCcCHHHHHHHHHhh
Confidence            11   22478999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-39  Score=313.24  Aligned_cols=230  Identities=22%  Similarity=0.312  Sum_probs=185.9

Q ss_pred             HhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc---------------------------CCccccceEEEecCc
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH---------------------------HSETEDSAFVVYSPQ  191 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~---------------------------~~~~~~~~~~~~~~~  191 (412)
                      ...+.|.+.+.||+|+||+|+.|.. .+++.||+|.++                           |+++.+...+.....
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~   93 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT   93 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC
Confidence            4456899999999999999999965 568999999532                           556666666777888


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC-CcEEEeecCC
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN-LEAFVADFGT  270 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~-~~~kl~DfGl  270 (412)
                      ..++||||+.+|+|.+++....   .+......+++.|++.|++|+|++   +|+||||||+|||+|.+ +++||+|||+
T Consensus        94 ~~~ivmEy~~gGdL~~~i~~~g---~l~E~~ar~~F~Qlisav~y~H~~---gi~HRDLK~ENilld~~~~~~Kl~DFG~  167 (370)
T KOG0583|consen   94 KIYIVMEYCSGGDLFDYIVNKG---RLKEDEARKYFRQLISAVAYCHSR---GIVHRDLKPENILLDGNEGNLKLSDFGL  167 (370)
T ss_pred             eEEEEEEecCCccHHHHHHHcC---CCChHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEecCCCCCEEEecccc
Confidence            8999999999999999998743   588899999999999999999999   99999999999999999 9999999999


Q ss_pred             ccccCCCCCCcccccccccccccccccCcc-cC-cccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhcc
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYTMV-VT-EKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRL  348 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~s-~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~  348 (412)
                      +.............+||+.|+|||++.+.. |+ .++||||+||+||.|++|+.||+..       ........+.....
T Consensus       168 s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~-------~~~~l~~ki~~~~~  240 (370)
T KOG0583|consen  168 SAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDS-------NVPNLYRKIRKGEF  240 (370)
T ss_pred             ccccCCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCc-------cHHHHHHHHhcCCc
Confidence            997743344456679999999999999877 76 6899999999999999999999841       11111122222222


Q ss_pred             CCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHH
Q 042435          349 SPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQ  386 (412)
Q Consensus       349 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  386 (412)
                      .-+  ....  ...+..++.+|+..||.+|+|+.|+++
T Consensus       241 ~~p--~~~~--S~~~~~Li~~mL~~~P~~R~t~~~i~~  274 (370)
T KOG0583|consen  241 KIP--SYLL--SPEARSLIEKMLVPDPSTRITLLEILE  274 (370)
T ss_pred             cCC--CCcC--CHHHHHHHHHHcCCCcccCCCHHHHhh
Confidence            221  1110  334788999999999999999999993

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=2.8e-39  Score=305.65  Aligned_cols=231  Identities=20%  Similarity=0.255  Sum_probs=175.9

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEecc------------------------CCccccceEEEecCceEEEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .|+..+.||+|+||.||+|.. .+|+.||+|.+.                        |+++......+...+..++|||
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEE
Confidence            377889999999999999976 579999999753                        3333333344667788999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++|+|.+++..... ..+++..+..++.|++.||+|||+.   +|+||||||+|||+++++.++|+|||+++......
T Consensus        81 ~~~~g~L~~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~  156 (285)
T cd05631          81 IMNGGDLKFHIYNMGN-PGFDEQRAIFYAAELCCGLEDLQRE---RIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGE  156 (285)
T ss_pred             ecCCCcHHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCC
Confidence            9999999877754322 2488999999999999999999998   99999999999999999999999999998653322


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                       ......||..|+|||++.+..++.++|||||||++|||++|+.||....       ... ..+.+..............
T Consensus       157 -~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~-------~~~-~~~~~~~~~~~~~~~~~~~  227 (285)
T cd05631         157 -TVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRK-------ERV-KREEVDRRVKEDQEEYSEK  227 (285)
T ss_pred             -eecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCC-------cch-hHHHHHHHhhcccccCCcc
Confidence             2233468999999999999999999999999999999999999987321       100 1111111111100000111


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCC-----HHHHHHH
Q 042435          359 DIILVSTIALACLRSKPKSRPT-----MQRISQE  387 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  387 (412)
                      ....+.+++.+||+.||++||+     +++++++
T Consensus       228 ~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h  261 (285)
T cd05631         228 FSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQH  261 (285)
T ss_pred             CCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcC
Confidence            1234788999999999999997     8888875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=8.1e-40  Score=313.33  Aligned_cols=229  Identities=25%  Similarity=0.363  Sum_probs=180.9

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEeccCCc------------------------cccceEEEecCceEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHHSE------------------------TEDSAFVVYSPQCMFF  195 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~~~------------------------~~~~~~~~~~~~~~~l  195 (412)
                      ..++|++...||+|+||.||.|+- .+|+.+|+|+|+.+.                        ++.....+++.+.+||
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYL  218 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYL  218 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEE
Confidence            567899999999999999999966 469999999986543                        2333344788999999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||||+|||++..+|...+   .|+......++.+++.|++-||+.   |++||||||+|+|||..|++||+|||+++-+.
T Consensus       219 iMEylPGGD~mTLL~~~~---~L~e~~arfYiaE~vlAI~~iH~~---gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~  292 (550)
T KOG0605|consen  219 IMEYLPGGDMMTLLMRKD---TLTEDWARFYIAETVLAIESIHQL---GYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLD  292 (550)
T ss_pred             EEEecCCccHHHHHHhcC---cCchHHHHHHHHHHHHHHHHHHHc---CcccccCChhheeecCCCCEeeccccccchhh
Confidence            999999999999998765   588888888999999999999999   99999999999999999999999999985331


Q ss_pred             C-----------------------CCC----Cc--------------------ccccccccccccccccCcccCcccccH
Q 042435          276 V-----------------------DSS----NR--------------------TLQAGTYGYIALELVYTMVVTEKCVIY  308 (412)
Q Consensus       276 ~-----------------------~~~----~~--------------------~~~~gt~~y~aPE~~~~~~~s~ksDv~  308 (412)
                      .                       +..    ..                    ...+|||.|||||++.+..|+..+|.|
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwW  372 (550)
T KOG0605|consen  293 KKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWW  372 (550)
T ss_pred             hhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHH
Confidence            1                       000    00                    123699999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhc--cCCccchhhHHHHHHHHHHHHhcCcCCCCCCCC---HHH
Q 042435          309 SFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQR--LSPPINQKIIQDIILVSTIALACLRSKPKSRPT---MQR  383 (412)
Q Consensus       309 S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs---~~e  383 (412)
                      |+|||+|||+.|.+||.       +..+......++.-+  +..|......   ....+|+.+|+. ||++|-.   ++|
T Consensus       373 SLG~ImyEmLvGyPPF~-------s~tp~~T~rkI~nwr~~l~fP~~~~~s---~eA~DLI~rll~-d~~~RLG~~G~~E  441 (550)
T KOG0605|consen  373 SLGCIMYEMLVGYPPFC-------SETPQETYRKIVNWRETLKFPEEVDLS---DEAKDLITRLLC-DPENRLGSKGAEE  441 (550)
T ss_pred             HHHHHHHHHHhCCCCCC-------CCCHHHHHHHHHHHhhhccCCCcCccc---HHHHHHHHHHhc-CHHHhcCcccHHH
Confidence            99999999999999998       233334444444332  3332222222   348899999999 9999964   666


Q ss_pred             HHH
Q 042435          384 ISQ  386 (412)
Q Consensus       384 vl~  386 (412)
                      |-+
T Consensus       442 IK~  444 (550)
T KOG0605|consen  442 IKK  444 (550)
T ss_pred             Hhc
Confidence            544

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=3.7e-39  Score=316.40  Aligned_cols=240  Identities=22%  Similarity=0.319  Sum_probs=184.0

Q ss_pred             HHhhcCcccceeeeecCceEEEEEEe------CCCcEEEEEec-----------------------cCCccccceEEEec
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAEL------PDGKVVALKKL-----------------------HHSETEDSAFVVYS  189 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~~------~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~  189 (412)
                      .-..++|++.+.||+|+||.||+|..      .+++.||+|++                       +|+++......+..
T Consensus        34 ~~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~  113 (374)
T cd05106          34 EFPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTH  113 (374)
T ss_pred             cccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecC
Confidence            34456799999999999999999864      23468999965                       35556666666778


Q ss_pred             CceEEEEEEeccCCceeeeeccCcc-------------------------------------------------------
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDE-------------------------------------------------------  214 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~-------------------------------------------------------  214 (412)
                      .+..++||||+++|+|.++++....                                                       
T Consensus       114 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (374)
T cd05106         114 GGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQ  193 (374)
T ss_pred             CCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccc
Confidence            8899999999999999888753210                                                       


Q ss_pred             ------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC--
Q 042435          215 ------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN--  280 (412)
Q Consensus       215 ------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~--  280 (412)
                                  ...+++.+..+++.|++.||+|||++   +|+||||||+|||+++++.+||+|||+++........  
T Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~  270 (374)
T cd05106         194 SSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASK---NCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVV  270 (374)
T ss_pred             cccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceee
Confidence                        12478899999999999999999998   9999999999999999999999999999765432211  


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      .....++..|+|||++.+..++.++|||||||++|||++ |+.||....       .................+...   
T Consensus       271 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~-------~~~~~~~~~~~~~~~~~~~~~---  340 (374)
T cd05106         271 KGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGIL-------VNSKFYKMVKRGYQMSRPDFA---  340 (374)
T ss_pred             ccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCcccc-------ccHHHHHHHHcccCccCCCCC---
Confidence            122335678999999988899999999999999999997 999987321       111122222222222111111   


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      ...+.+++.+||+.||++|||+.++++.|+++
T Consensus       341 ~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~  372 (374)
T cd05106         341 PPEIYSIMKMCWNLEPTERPTFSQISQLIQRQ  372 (374)
T ss_pred             CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence            23478899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-40  Score=312.04  Aligned_cols=228  Identities=26%  Similarity=0.370  Sum_probs=183.0

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEeccCC----------------------ccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHHS----------------------ETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~~----------------------~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ..|...++||+|+||.||||.. ..++.||+|.++..                      ++...+..+..+..++++|||
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey   92 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEY   92 (467)
T ss_pred             cccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHH
Confidence            4466678999999999999965 57999999987543                      233333345567778999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      |.+|++.+.++...   .++.....-+++++..||.|||++   +.+|||||+.|||+..++.+|++|||++-.+.....
T Consensus        93 ~~gGsv~~lL~~~~---~~~E~~i~~ilre~l~~l~ylH~~---~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~  166 (467)
T KOG0201|consen   93 CGGGSVLDLLKSGN---ILDEFEIAVILREVLKGLDYLHSE---KKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVK  166 (467)
T ss_pred             hcCcchhhhhccCC---CCccceeeeehHHHHHHhhhhhhc---ceecccccccceeEeccCcEEEEecceeeeeechhh
Confidence            99999999998664   346667777899999999999999   999999999999999999999999999988877666


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      ......||+.|||||++.+..|+.|+||||||++.+||.+|.+|+....       +... .-.+.+..+|.. ..  ..
T Consensus       167 rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~h-------Pmrv-lflIpk~~PP~L-~~--~~  235 (467)
T KOG0201|consen  167 RRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLH-------PMRV-LFLIPKSAPPRL-DG--DF  235 (467)
T ss_pred             ccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccC-------cceE-EEeccCCCCCcc-cc--cc
Confidence            6677899999999999998899999999999999999999999987432       1111 111112222211 11  33


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+.+++..|++.||+.||++.+++++
T Consensus       236 S~~~kEFV~~CL~k~P~~RpsA~~LLKh  263 (467)
T KOG0201|consen  236 SPPFKEFVEACLDKNPEFRPSAKELLKH  263 (467)
T ss_pred             CHHHHHHHHHHhhcCcccCcCHHHHhhh
Confidence            4458899999999999999999999876

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=5e-39  Score=309.44  Aligned_cols=221  Identities=22%  Similarity=0.286  Sum_probs=176.6

Q ss_pred             eeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEEEeccCC
Q 042435          149 YCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIYEYMERG  203 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~g  203 (412)
                      +.||+|+||.||++.. .+|+.||+|.+                        +|+++......+...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            3699999999999976 57899999964                        4566666667788889999999999999


Q ss_pred             ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCccc
Q 042435          204 SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTL  283 (412)
Q Consensus       204 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~  283 (412)
                      +|.+++....   .+++.....++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++...........
T Consensus        81 ~L~~~l~~~~---~~~~~~~~~~~~qi~~~L~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~  154 (323)
T cd05571          81 ELFFHLSRER---VFSEDRARFYGAEIVSALGYLHSC---DVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKT  154 (323)
T ss_pred             cHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcccc
Confidence            9988886543   589999999999999999999998   9999999999999999999999999999754333333344


Q ss_pred             ccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHH
Q 042435          284 QAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILV  363 (412)
Q Consensus       284 ~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (412)
                      ..||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......  +..   ....+
T Consensus       155 ~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~-------~~~~~~~~~~~~~~~~--p~~---~~~~~  222 (323)
T cd05571         155 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-------DHEKLFELILMEEIRF--PRT---LSPEA  222 (323)
T ss_pred             eecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCC-------CHHHHHHHHHcCCCCC--CCC---CCHHH
Confidence            57999999999999999999999999999999999999998621       1111111111111111  111   12237


Q ss_pred             HHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          364 STIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       364 ~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                      .+++.+||+.||++||     ++.+++++
T Consensus       223 ~~li~~~L~~dP~~R~~~~~~~~~~ll~h  251 (323)
T cd05571         223 KSLLAGLLKKDPKQRLGGGPEDAKEIMEH  251 (323)
T ss_pred             HHHHHHHccCCHHHcCCCCCCCHHHHHcC
Confidence            8899999999999999     79998764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=9.4e-39  Score=301.85  Aligned_cols=225  Identities=20%  Similarity=0.251  Sum_probs=176.1

Q ss_pred             eeeeecCceEEEEEEeCCCcEEEEEecc------------------------CCccccceEEEec----CceEEEEEEec
Q 042435          149 YCIGTGGYDSVYKAELPDGKVVALKKLH------------------------HSETEDSAFVVYS----PQCMFFIYEYM  200 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~~~~vAvK~l~------------------------~~~~~~~~~~~~~----~~~~~lv~ey~  200 (412)
                      ..||+|++|.||+|.+ +|+.||||+++                        |+++....+.+.+    ....++||||+
T Consensus        26 ~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~  104 (283)
T PHA02988         26 VLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYC  104 (283)
T ss_pred             eEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeC
Confidence            6799999999999998 78999999764                        4444444444444    35689999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++|+|.+++....   .++|.....++.+++.||+|||+..  +++||||||+||++++++.+||+|||+++......  
T Consensus       105 ~~g~L~~~l~~~~---~~~~~~~~~i~~~i~~~l~~lH~~~--~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~--  177 (283)
T PHA02988        105 TRGYLREVLDKEK---DLSFKTKLDMAIDCCKGLYNLYKYT--NKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPP--  177 (283)
T ss_pred             CCCcHHHHHhhCC---CCChhHHHHHHHHHHHHHHHHHhcC--CCCCCcCChhhEEECCCCcEEEcccchHhhhcccc--
Confidence            9999999997654   5899999999999999999999732  67899999999999999999999999998653321  


Q ss_pred             cccccccccccccccccC--cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          281 RTLQAGTYGYIALELVYT--MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~--~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                       ....|+..|+|||++.+  ..++.++|||||||++|||++|+.||...       ........+.......+.+..   
T Consensus       178 -~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~-------~~~~~~~~i~~~~~~~~~~~~---  246 (283)
T PHA02988        178 -FKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENL-------TTKEIYDLIINKNNSLKLPLD---  246 (283)
T ss_pred             -ccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCC-------CHHHHHHHHHhcCCCCCCCCc---
Confidence             23467899999999876  67899999999999999999999999732       111111222222222222211   


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ....+.+++.+||+.||++|||+.|+++.|+...
T Consensus       247 ~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~  280 (283)
T PHA02988        247 CPLEIKCIVEACTSHDSIKRPNIKEILYNLSLYK  280 (283)
T ss_pred             CcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence            2234889999999999999999999999998754

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-39  Score=337.94  Aligned_cols=239  Identities=25%  Similarity=0.393  Sum_probs=194.2

Q ss_pred             cCcccceeeeecCceEEEEEEeCC--Cc----EEEEEe----------------------ccCCccccceEEEecCceEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPD--GK----VVALKK----------------------LHHSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~--~~----~vAvK~----------------------l~~~~~~~~~~~~~~~~~~~  194 (412)
                      ++.+..+.||+|.||.||+|.+.+  |.    .||||.                      ++|+|+....++|.+....+
T Consensus       692 ~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~  771 (1025)
T KOG1095|consen  692 KNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPL  771 (1025)
T ss_pred             hheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcE
Confidence            445667899999999999997743  33    489995                      47999999999999999999


Q ss_pred             EEEEeccCCceeeeeccCcc----cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCC
Q 042435          195 FIYEYMERGSLFCVLRDDDE----AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGT  270 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGl  270 (412)
                      +++|||++|||..+|++.+.    ...++....+.++.|||+|+.||+++   +.|||||..+|+|+++...+||+|||+
T Consensus       772 i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~---~fvHRDLAaRNCLL~~~r~VKIaDFGl  848 (1025)
T KOG1095|consen  772 ILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESK---HFVHRDLAARNCLLDERRVVKIADFGL  848 (1025)
T ss_pred             EEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhC---CCcCcchhhhheeecccCcEEEcccch
Confidence            99999999999999998632    34588999999999999999999999   999999999999999999999999999


Q ss_pred             ccccCCCCCCcccc--cccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhh-
Q 042435          271 VRLLDVDSSNRTLQ--AGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQ-  346 (412)
Q Consensus       271 a~~~~~~~~~~~~~--~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~-  346 (412)
                      |+.+..........  .-...|||||.+..+.++.|+|||||||++||++| |..||...       .....+..+... 
T Consensus       849 ArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~~~-------~n~~v~~~~~~gg  921 (1025)
T KOG1095|consen  849 ARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSR-------SNFEVLLDVLEGG  921 (1025)
T ss_pred             hHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCCCc-------chHHHHHHHHhCC
Confidence            99554433332222  23468999999999999999999999999999999 88998732       222333334333 


Q ss_pred             ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCC
Q 042435          347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKK  396 (412)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  396 (412)
                      ++.+  +..+++   .+.+++..||+.+|++||++.++++.++.+.....
T Consensus       922 RL~~--P~~CP~---~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~~~~  966 (1025)
T KOG1095|consen  922 RLDP--PSYCPE---KLYQLMLQCWKHDPEDRPSFRTIVEQDPAISNAAL  966 (1025)
T ss_pred             ccCC--CCCCCh---HHHHHHHHHccCChhhCccHHHHHhhhhhhhhhhc
Confidence            3333  233333   48899999999999999999999999988765443

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=1.2e-38  Score=298.13  Aligned_cols=233  Identities=21%  Similarity=0.309  Sum_probs=182.5

Q ss_pred             cCcccceeeeecCceEEEEEEeC----CCcEEEEEec----------------------cCCccccceEEEecCceEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP----DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~----~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ++|++.+.||+|+||.||+|.+.    .+..||+|.+                      +|+++......+..++..++|
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   84 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIV   84 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEE
Confidence            56888999999999999999753    4678999964                      466777777777888899999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++|+|.+++....  ..++|.+++.++.|++.||+|||+.   +++||||||+||+++.++.++++|||.+.....
T Consensus        85 ~e~~~~~~L~~~l~~~~--~~l~~~~~~~~~~~i~~al~~lH~~---~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~  159 (266)
T cd05064          85 TEYMSNGALDSFLRKHE--GQLVAGQLMGMLPGLASGMKYLSEM---GYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKS  159 (266)
T ss_pred             EEeCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHHC---CEeeccccHhhEEEcCCCcEEECCCcccccccc
Confidence            99999999999887543  2589999999999999999999998   999999999999999999999999998765322


Q ss_pred             CCCC-cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          277 DSSN-RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       277 ~~~~-~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      .... .....++..|+|||.+.+..++.++|||||||++||+++ |+.||....       . ....+.+......+.+.
T Consensus       160 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~-------~-~~~~~~~~~~~~~~~~~  231 (266)
T cd05064         160 EAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMS-------G-QDVIKAVEDGFRLPAPR  231 (266)
T ss_pred             cchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCC-------H-HHHHHHHHCCCCCCCCC
Confidence            2111 112235678999999999999999999999999999775 999986321       1 11122222222222222


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      .   ....+.+++.+||+.+|++||+++|+.+.|+++
T Consensus       232 ~---~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         232 N---CPNLLHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             C---CCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence            2   223478899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=7.2e-40  Score=314.11  Aligned_cols=227  Identities=27%  Similarity=0.358  Sum_probs=192.1

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEe-----------------------ccCCccccceEEEecCceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKK-----------------------LHHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~-----------------------l~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ++|.+.+.||+|+||.||||+.+ +.+.||+|.                       ++|+|+......+.+..++|+|.|
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            57888999999999999999664 689999994                       478888888888999999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+.+ +|+.+|....   .++..++..++.+++.||.|||++   +|+|||+||.|||++..+.+|+||||+|+.+..+.
T Consensus        82 ~a~g-~L~~il~~d~---~lpEe~v~~~a~~LVsaL~yLhs~---rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t  154 (808)
T KOG0597|consen   82 YAVG-DLFTILEQDG---KLPEEQVRAIAYDLVSALYYLHSN---RILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNT  154 (808)
T ss_pred             hhhh-hHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHhc---CcccccCCcceeeecCCCceeechhhhhhhcccCc
Confidence            9976 9999998765   599999999999999999999999   99999999999999999999999999999988777


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      ...+...||+.|||||...+..|+..+|.||+||++||+++|++||....       -......+......++.     .
T Consensus       155 ~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~s-------i~~Lv~~I~~d~v~~p~-----~  222 (808)
T KOG0597|consen  155 SVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARS-------ITQLVKSILKDPVKPPS-----T  222 (808)
T ss_pred             eeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHH-------HHHHHHHHhcCCCCCcc-----c
Confidence            77788899999999999999999999999999999999999999987210       00111122222222221     2


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      ....+..++...+.+||.+|.|..+++.+-
T Consensus       223 ~S~~f~nfl~gLL~kdP~~RltW~~Ll~Hp  252 (808)
T KOG0597|consen  223 ASSSFVNFLQGLLIKDPAQRLTWTDLLGHP  252 (808)
T ss_pred             ccHHHHHHHHHHhhcChhhcccHHHHhcCh
Confidence            223478889999999999999999988763

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=1.1e-38  Score=307.04  Aligned_cols=226  Identities=22%  Similarity=0.320  Sum_probs=176.2

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEeccC-------------------------CccccceEEEecCceEEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHH-------------------------SETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~-------------------------~~~~~~~~~~~~~~~~~lv~  197 (412)
                      +|++.+.||+|+||.||+|... +++.||+|.++.                         +++......+...+..++||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            5788999999999999999765 578999997642                         22223334466778899999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++....   .+++.++..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        81 E~~~~g~L~~~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~  154 (323)
T cd05616          81 EYVNGGDLMYQIQQVG---RFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWD  154 (323)
T ss_pred             cCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEecCCCHHHeEECCCCcEEEccCCCceecCCC
Confidence            9999999988886543   488999999999999999999998   9999999999999999999999999999754333


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                      ........||+.|+|||++.+..++.++|||||||++|||+||+.||...       ........+.......+  ... 
T Consensus       155 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~-------~~~~~~~~i~~~~~~~p--~~~-  224 (323)
T cd05616         155 GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE-------DEDELFQSIMEHNVAYP--KSM-  224 (323)
T ss_pred             CCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCC-------CHHHHHHHHHhCCCCCC--CcC-
Confidence            33334557899999999999999999999999999999999999998732       11111222222222111  111 


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCH-----HHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPTM-----QRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~-----~evl~~  387 (412)
                        ...+.+++.+|++.||++|++.     .++.++
T Consensus       225 --s~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h  257 (323)
T cd05616         225 --SKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH  257 (323)
T ss_pred             --CHHHHHHHHHHcccCHHhcCCCCCCCHHHHhcC
Confidence              2237789999999999999974     566543

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=9.3e-39  Score=281.61  Aligned_cols=239  Identities=24%  Similarity=0.303  Sum_probs=185.1

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ++|...+++|+|.||.||+|+. .+|+.||||++                       +|+++.....++...+.+-||+|
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfE   81 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFE   81 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEE
Confidence            3577788999999999999954 68999999976                       45666666667788889999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      ||+. +|+..+++..  ..++..++..++.++.+|++|||++   .|+||||||.|+|+++++.+||+|||+|+.+....
T Consensus        82 fm~t-dLe~vIkd~~--i~l~pa~iK~y~~m~LkGl~y~H~~---~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~  155 (318)
T KOG0659|consen   82 FMPT-DLEVVIKDKN--IILSPADIKSYMLMTLKGLAYCHSK---WILHRDLKPNNLLISSDGQLKIADFGLARFFGSPN  155 (318)
T ss_pred             eccc-cHHHHhcccc--cccCHHHHHHHHHHHHHHHHHHHhh---hhhcccCCccceEEcCCCcEEeecccchhccCCCC
Confidence            9975 9999998765  4688999999999999999999999   99999999999999999999999999999987766


Q ss_pred             CCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccc-------------ccCCCCc-chhhHH
Q 042435          279 SNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSL-------------SSSSGPK-IMLIDI  343 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~-------------~~~~~~~-~~~~~~  343 (412)
                      ......+-|.+|+|||.+.+. .|+...||||.|||+.||+-|.+-|.....+             ....+++ ..+.+.
T Consensus       156 ~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY  235 (318)
T KOG0659|consen  156 RIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDY  235 (318)
T ss_pred             cccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCccccccccH
Confidence            666666889999999998765 5999999999999999999887655421111             0011111 111121


Q ss_pred             hhhc-cCC-ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          344 LYQR-LSP-PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       344 ~~~~-~~~-~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..-. .+. +...-.......+.+++..++..||.+|+|+.|++++
T Consensus       236 ~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  236 VKIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             HHHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhcc
Confidence            1111 111 1111122223347899999999999999999999876

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.9e-39  Score=303.15  Aligned_cols=224  Identities=22%  Similarity=0.297  Sum_probs=179.4

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||+|... +++.||+|.+                        +|+++......+.+.+..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            46889999999999999999775 6899999975                        3455555555566778899999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++....   .+++.....++.|++.||+|||++   +++||||||+|||++.++.+||+|||+++.....
T Consensus        81 e~~~~~~L~~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~  154 (291)
T cd05612          81 EYVPGGELFSYLRNSG---RFSNSTGLFYASEIVCALEYLHSK---EIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDR  154 (291)
T ss_pred             eCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEEecCcchhccCC
Confidence            9999999999887654   588999999999999999999998   9999999999999999999999999999865432


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                         .....||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  ... 
T Consensus       155 ---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~-------~~~~~~~~i~~~~~~~~--~~~-  221 (291)
T cd05612         155 ---TWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDD-------NPFGIYEKILAGKLEFP--RHL-  221 (291)
T ss_pred             ---cccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-------CHHHHHHHHHhCCcCCC--ccC-
Confidence               22346899999999999888999999999999999999999998632       11111222222222111  111 


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCC-----HHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPT-----MQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  387 (412)
                        ...+.+++.+||+.||.+||+     ++|++++
T Consensus       222 --~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h  254 (291)
T cd05612         222 --DLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNH  254 (291)
T ss_pred             --CHHHHHHHHHHcCCCHHHccCCccCCHHHHhcC
Confidence              223788999999999999995     8888876

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-38  Score=308.12  Aligned_cols=229  Identities=19%  Similarity=0.278  Sum_probs=182.0

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||+|... +++.||+|.+                        +|+++......+...+..++||
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   80 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM   80 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence            46899999999999999999875 5899999965                        3566666677788889999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++....   .+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.... 
T Consensus        81 e~~~g~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~-  153 (333)
T cd05600          81 EYVPGGDFRTLLNNLG---VLSEDHARFYMAEMFEAVDALHEL---GYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT-  153 (333)
T ss_pred             eCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEEEeCcCCccccc-
Confidence            9999999999987543   588999999999999999999998   999999999999999999999999999976543 


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhh--hccCCccch-
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY--QRLSPPINQ-  354 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-  354 (412)
                        ......||+.|+|||++.+..++.++|||||||++|||++|+.||....       .......+..  .....+... 
T Consensus       154 --~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~-------~~~~~~~i~~~~~~~~~~~~~~  224 (333)
T cd05600         154 --YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGST-------PNETWENLKYWKETLQRPVYDD  224 (333)
T ss_pred             --ccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCC-------HHHHHHHHHhccccccCCCCCc
Confidence              2234578999999999998899999999999999999999999986321       1111111111  011111100 


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ........+.+++.+||..+|++||++.|++++
T Consensus       225 ~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         225 PRFNLSDEAWDLITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             cccccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence            001112347889999999999999999999976

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=1.8e-38  Score=305.78  Aligned_cols=226  Identities=21%  Similarity=0.308  Sum_probs=175.0

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEeccCC-------------------------ccccceEEEecCceEEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHHS-------------------------ETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~~-------------------------~~~~~~~~~~~~~~~~lv~  197 (412)
                      +|++.+.||+|+||.||+|... +++.||+|.++..                         .+......+...+..++||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            5788999999999999999775 5789999976421                         1222333456678899999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        81 E~~~~g~L~~~~~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~  154 (324)
T cd05587          81 EYVNGGDLMYHIQQVG---KFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFG  154 (324)
T ss_pred             cCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEEcCCCCEEEeecCcceecCCC
Confidence            9999999998886543   488999999999999999999998   9999999999999999999999999998754333


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                      ........||+.|+|||++.+..++.++|||||||++|||+||+.||...       ........+.......  +... 
T Consensus       155 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~-------~~~~~~~~i~~~~~~~--~~~~-  224 (324)
T cd05587         155 GKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE-------DEDELFQSIMEHNVSY--PKSL-  224 (324)
T ss_pred             CCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC-------CHHHHHHHHHcCCCCC--CCCC-
Confidence            33334457999999999999999999999999999999999999998632       1111122222221111  1111 


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCH-----HHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPTM-----QRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~-----~evl~~  387 (412)
                        ...+.+++.+||+.||++||+.     .++.++
T Consensus       225 --~~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h  257 (324)
T cd05587         225 --SKEAVSICKGLLTKHPAKRLGCGPTGERDIREH  257 (324)
T ss_pred             --CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence              2237789999999999999976     566544

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=1.2e-38  Score=304.08  Aligned_cols=238  Identities=21%  Similarity=0.275  Sum_probs=176.7

Q ss_pred             cCcccceeeeecCceEEEEEEeCC-----------------CcEEEEEec----------------------cCCccccc
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPD-----------------GKVVALKKL----------------------HHSETEDS  183 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~-----------------~~~vAvK~l----------------------~~~~~~~~  183 (412)
                      ++|.+.++||+|+||.||+|.+.+                 +..||+|.+                      +|+++...
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~   84 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL   84 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence            468888999999999999997532                 347999965                      35566666


Q ss_pred             eEEEecCceEEEEEEeccCCceeeeeccCc----------------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEE
Q 042435          184 AFVVYSPQCMFFIYEYMERGSLFCVLRDDD----------------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVH  247 (412)
Q Consensus       184 ~~~~~~~~~~~lv~ey~~~gsL~~~l~~~~----------------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivH  247 (412)
                      ...+...+..++||||+++|+|.+++....                ....++|..+.+++.|++.||+|||+.   +|+|
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~ivH  161 (304)
T cd05096          85 LGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSL---NFVH  161 (304)
T ss_pred             EEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHC---Cccc
Confidence            666777888999999999999998875421                112478899999999999999999998   9999


Q ss_pred             eCCCCCCEEecCCCcEEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh--CCCC
Q 042435          248 RDISSNNILLNSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM--GTHP  323 (412)
Q Consensus       248 rDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt--g~~P  323 (412)
                      |||||+|||++.++.+||+|||+++........  .....++..|+|||++.+..++.++||||||+++|||++  +..|
T Consensus       162 ~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p  241 (304)
T cd05096         162 RDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQP  241 (304)
T ss_pred             cCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCC
Confidence            999999999999999999999999865432211  123345788999999988889999999999999999987  5567


Q ss_pred             cccccccccCCCCcchhh---HHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          324 GELLLSLSSSSGPKIMLI---DILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      |....       ......   .....................+.+++.+||+.||++|||+.||.+.|++
T Consensus       242 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~~~l~~  304 (304)
T cd05096         242 YGELT-------DEQVIENAGEFFRDQGRQVYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIHAFLTE  304 (304)
T ss_pred             CCcCC-------HHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHhC
Confidence            65321       111111   1111100000000000112347899999999999999999999998864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=2.7e-38  Score=294.48  Aligned_cols=234  Identities=23%  Similarity=0.362  Sum_probs=183.7

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEecc--------------------CCccccceEEEecCceEEEEEEeccC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLH--------------------HSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~--------------------~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++|++.++||+|+||.||+|...+++.||+|.+.                    |+++......+...+..+++|||+++
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   85 (261)
T cd05072           6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMAK   85 (261)
T ss_pred             HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCchhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCCC
Confidence            5688899999999999999998888899999653                    45555555566777889999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC-c
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-R  281 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~-~  281 (412)
                      |+|.++++.... ..+++.+++.++.|++.||+|||+.   +++||||||+||+++.++.++|+|||+++........ .
T Consensus        86 ~~L~~~l~~~~~-~~~~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~  161 (261)
T cd05072          86 GSLLDFLKSDEG-GKVLLPKLIDFSAQIAEGMAYIERK---NYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAR  161 (261)
T ss_pred             CcHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEecCCCcEEECCCccceecCCCceecc
Confidence            999998865432 2588999999999999999999998   9999999999999999999999999999865432211 1


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ....++..|+|||+.....++.++||||||+++|||+| |+.||...       .. ......+......+....   ..
T Consensus       162 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~-------~~-~~~~~~~~~~~~~~~~~~---~~  230 (261)
T cd05072         162 EGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGM-------SN-SDVMSALQRGYRMPRMEN---CP  230 (261)
T ss_pred             CCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCC-------CH-HHHHHHHHcCCCCCCCCC---CC
Confidence            22345678999999988889999999999999999998 99998621       11 111122222211111111   22


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      ..+.+++.+||+.+|++||+++++.+.|++.
T Consensus       231 ~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  261 (261)
T cd05072         231 DELYDIMKTCWKEKAEERPTFDYLQSVLDDF  261 (261)
T ss_pred             HHHHHHHHHHccCCcccCcCHHHHHHHHhcC
Confidence            3478899999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=4.1e-38  Score=292.59  Aligned_cols=231  Identities=22%  Similarity=0.330  Sum_probs=181.4

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++|++.+.||+|+||.||++.+.++..+|+|.+                    +|+++......+...+..++||||+++
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~   83 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMEN   83 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCCccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCC
Confidence            458888999999999999999988889999964                    455666666667788889999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC-c
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-R  281 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~-~  281 (412)
                      |+|.++++....  .++|..+..++.|++.||+|||+.   +++||||||+||++++++.+||+|||.++........ .
T Consensus        84 ~~L~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~  158 (256)
T cd05114          84 GCLLNYLRQRQG--KLSKDMLLSMCQDVCEGMEYLERN---SFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSS  158 (256)
T ss_pred             CcHHHHHHhCcc--CCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcceEEEcCCCeEEECCCCCccccCCCceecc
Confidence            999998875432  489999999999999999999998   9999999999999999999999999998765322211 1


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ....++..|+|||++.+..++.++||||||+++|||++ |+.||....       . ......+........+..   ..
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~-------~-~~~~~~i~~~~~~~~~~~---~~  227 (256)
T cd05114         159 SGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKS-------N-YEVVEMISRGFRLYRPKL---AS  227 (256)
T ss_pred             CCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCC-------H-HHHHHHHHCCCCCCCCCC---CC
Confidence            22235668999999988889999999999999999999 899986321       1 111111211111111111   12


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                      ..+.+++.+||+.+|++||+++|+++.|.
T Consensus       228 ~~~~~li~~c~~~~p~~Rps~~~l~~~l~  256 (256)
T cd05114         228 MTVYEVMYSCWHEKPEGRPTFAELLRAIT  256 (256)
T ss_pred             HHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence            34789999999999999999999998873

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=2.1e-38  Score=305.93  Aligned_cols=224  Identities=22%  Similarity=0.287  Sum_probs=181.3

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||+|... +++.||+|.+                        +|+++......+..++..++||
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   97 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLL   97 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEE
Confidence            57899999999999999999875 6899999954                        4677777777788889999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++....   .+++.....++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        98 e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~  171 (329)
T PTZ00263         98 EFVVGGELFTHLRKAG---RFPNDVAKFYHAELVLAFEYLHSK---DIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDR  171 (329)
T ss_pred             cCCCCChHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEECCCCCEEEeeccCceEcCCC
Confidence            9999999999887643   478888899999999999999998   9999999999999999999999999999865432


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                      .   ....||+.|+|||++.+..++.++|||||||++|||++|+.||....       .......+.......+  ... 
T Consensus       172 ~---~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~-------~~~~~~~i~~~~~~~p--~~~-  238 (329)
T PTZ00263        172 T---FTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDT-------PFRIYEKILAGRLKFP--NWF-  238 (329)
T ss_pred             c---ceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCC-------HHHHHHHHhcCCcCCC--CCC-
Confidence            2   23478999999999999889999999999999999999999986321       1111122222222111  111 


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCC-----HHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPT-----MQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  387 (412)
                        ...+.+++.+||+.||++||+     ++|++++
T Consensus       239 --~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h  271 (329)
T PTZ00263        239 --DGRARDLVKGLLQTDHTKRLGTLKGGVADVKNH  271 (329)
T ss_pred             --CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence              123778999999999999996     6888766

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=4.2e-38  Score=303.12  Aligned_cols=224  Identities=23%  Similarity=0.315  Sum_probs=177.9

Q ss_pred             cccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------------cCCccccceEEEecCceEEEE
Q 042435          145 FHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      |++.+.||+|+||.||+|... +++.||||.+                           +|+++......+...+..++|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            667899999999999999764 6899999965                           255666666667788899999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++|+|..+++..    .+++.....++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++....
T Consensus        81 ~E~~~~~~L~~~~~~~----~l~~~~~~~~~~qi~~al~~lH~~---~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~  153 (324)
T cd05589          81 MEYAAGGDLMMHIHTD----VFSEPRAVFYAACVVLGLQYLHEN---KIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMG  153 (324)
T ss_pred             EcCCCCCcHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCcEEeCcccCCccCCC
Confidence            9999999998877643    489999999999999999999998   999999999999999999999999999875433


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .........|++.|+|||.+.+..++.++|||||||++|||++|+.||...       ........+.......+  ...
T Consensus       154 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~-------~~~~~~~~i~~~~~~~p--~~~  224 (324)
T cd05589         154 FGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGD-------DEEEVFDSIVNDEVRYP--RFL  224 (324)
T ss_pred             CCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCC-------CHHHHHHHHHhCCCCCC--CCC
Confidence            333334567999999999999989999999999999999999999998632       11111122222211111  111


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                         ...+.+++.+||+.||++||     ++.+++++
T Consensus       225 ---~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~~  257 (324)
T cd05589         225 ---SREAISIMRRLLRRNPERRLGSGEKDAEDVKKQ  257 (324)
T ss_pred             ---CHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhhC
Confidence               22377899999999999999     57777664

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-39  Score=314.53  Aligned_cols=240  Identities=25%  Similarity=0.352  Sum_probs=191.9

Q ss_pred             hcCcccceeeeecCceEEEEEEeCC--C---cEEEEEe------------------------ccCCccccceEEEecCce
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPD--G---KVVALKK------------------------LHHSETEDSAFVVYSPQC  192 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~--~---~~vAvK~------------------------l~~~~~~~~~~~~~~~~~  192 (412)
                      -++-...++||+|+||+||+|.+..  +   ..||||.                        ++|+|++...+++...+.
T Consensus       156 H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~P  235 (474)
T KOG0194|consen  156 HSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEP  235 (474)
T ss_pred             ccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCc
Confidence            3444556899999999999997743  2   2389994                        478999999999999999


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      +++|||+|+||+|.++|+...+  .++..+++.++.+.|.||+|||++   +++||||..+|+|++.+..+||+|||+++
T Consensus       236 l~ivmEl~~gGsL~~~L~k~~~--~v~~~ek~~~~~~AA~Gl~YLh~k---~~IHRDIAARNcL~~~~~~vKISDFGLs~  310 (474)
T KOG0194|consen  236 LMLVMELCNGGSLDDYLKKNKK--SLPTLEKLRFCYDAARGLEYLHSK---NCIHRDIAARNCLYSKKGVVKISDFGLSR  310 (474)
T ss_pred             cEEEEEecCCCcHHHHHHhCCC--CCCHHHHHHHHHHHHhHHHHHHHC---CCcchhHhHHHheecCCCeEEeCcccccc
Confidence            9999999999999999987754  489999999999999999999999   99999999999999999999999999987


Q ss_pred             ccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCc
Q 042435          273 LLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPP  351 (412)
Q Consensus       273 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (412)
                      .-...........-...|+|||.+....|+.++|||||||++||+++ |..||.....       ......+.....+.+
T Consensus       311 ~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~-------~~v~~kI~~~~~r~~  383 (474)
T KOG0194|consen  311 AGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKN-------YEVKAKIVKNGYRMP  383 (474)
T ss_pred             CCcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCCH-------HHHHHHHHhcCccCC
Confidence            54311111112235679999999999999999999999999999999 8889874321       122223323333333


Q ss_pred             cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCC
Q 042435          352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKK  396 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  396 (412)
                      .+...+.   .+..++.+||..||++||+|.++.+.|+.+.....
T Consensus       384 ~~~~~p~---~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~  425 (474)
T KOG0194|consen  384 IPSKTPK---ELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKE  425 (474)
T ss_pred             CCCCCHH---HHHHHHHHhccCChhhccCHHHHHHHHHHHHhccc
Confidence            3333333   36778889999999999999999999998876544

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=3.1e-38  Score=302.99  Aligned_cols=220  Identities=25%  Similarity=0.361  Sum_probs=172.7

Q ss_pred             eeeeecCceEEEEEEeC-CCcEEEEEec-------------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAELP-DGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++||+|+||.||+|... +++.||+|.+                         +|+++......+..++..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999774 5889999965                         355555556667778899999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|.+++....   .++......++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..........
T Consensus        81 g~L~~~~~~~~---~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~  154 (316)
T cd05592          81 GDLMFHIQSSG---RFDEARARFYAAEIICGLQFLHKK---GIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKAS  154 (316)
T ss_pred             CcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCccc
Confidence            99998886543   488899999999999999999998   999999999999999999999999999986543333334


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+....  +..+...   ...
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~-------~~~~~~~~i~~~~--~~~~~~~---~~~  222 (316)
T cd05592         155 TFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGE-------DEDELFDSILNDR--PHFPRWI---SKE  222 (316)
T ss_pred             cccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCC-------CHHHHHHHHHcCC--CCCCCCC---CHH
Confidence            557999999999999889999999999999999999999998732       1111111111111  1111111   223


Q ss_pred             HHHHHHhcCcCCCCCCCCHH-HHHH
Q 042435          363 VSTIALACLRSKPKSRPTMQ-RISQ  386 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs~~-evl~  386 (412)
                      +.+++.+||+.||++||++. ++++
T Consensus       223 ~~~ll~~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05592         223 AKDCLSKLFERDPTKRLGVDGDIRQ  247 (316)
T ss_pred             HHHHHHHHccCCHHHcCCChHHHHc
Confidence            67899999999999999875 5544

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=4.4e-38  Score=296.59  Aligned_cols=235  Identities=24%  Similarity=0.352  Sum_probs=182.6

Q ss_pred             cCcccceeeeecCceEEEEEEeCC------CcEEEEEecc----------------------CCccccceEEEecCceEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPD------GKVVALKKLH----------------------HSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~------~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~  194 (412)
                      ++|++.+.||+|+||.||+|....      ...||+|.++                      |+++......+...+..+
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTC   84 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceE
Confidence            468888999999999999997633      2579999763                      445555555666778899


Q ss_pred             EEEEeccCCceeeeeccCcc-------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC
Q 042435          195 FIYEYMERGSLFCVLRDDDE-------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL  261 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~  261 (412)
                      ++|||+++|+|.+++.....             ...+++.....++.|++.||+|||+.   +++||||||+||++++++
T Consensus        85 ~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nil~~~~~  161 (283)
T cd05048          85 MLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSH---HFVHRDLAARNCLVGEGL  161 (283)
T ss_pred             EEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccccceEEEcCCC
Confidence            99999999999988865321             13488899999999999999999998   999999999999999999


Q ss_pred             cEEEeecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcc
Q 042435          262 EAFVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKI  338 (412)
Q Consensus       262 ~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~  338 (412)
                      .++|+|||+++.......  ......+++.|+|||.+.+..++.++|||||||++|||++ |..||...       .. .
T Consensus       162 ~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~-------~~-~  233 (283)
T cd05048         162 TVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGF-------SN-Q  233 (283)
T ss_pred             cEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCC-------CH-H
Confidence            999999999976533221  1223456788999999988899999999999999999998 99998632       11 1


Q ss_pred             hhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          339 MLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      .....+......+.+.   .....+.+++.+||+.||++||++.||+++|+++
T Consensus       234 ~~~~~i~~~~~~~~~~---~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~~  283 (283)
T cd05048         234 EVIEMIRSRQLLPCPE---DCPARVYALMIECWNEIPARRPRFKDIHTRLRSW  283 (283)
T ss_pred             HHHHHHHcCCcCCCcc---cCCHHHHHHHHHHccCChhhCcCHHHHHHHHhcC
Confidence            2222232222222211   2234488999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-38  Score=284.02  Aligned_cols=215  Identities=23%  Similarity=0.284  Sum_probs=177.4

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc------------------------CCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|+..+.||.|+||.|..++.+ +|..+|+|.++                        |+.+......+.+....++||
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvm  123 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVM  123 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEE
Confidence            56788899999999999999875 58899999774                        344444445577889999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||.++|.|..+++..+   .++.....-+|.||+.||+|||+.   .|++|||||+|||+|.+|.+||+|||+|+.....
T Consensus       124 eyv~GGElFS~Lrk~~---rF~e~~arFYAAeivlAleylH~~---~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~r  197 (355)
T KOG0616|consen  124 EYVPGGELFSYLRKSG---RFSEPHARFYAAEIVLALEYLHSL---DIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGR  197 (355)
T ss_pred             eccCCccHHHHHHhcC---CCCchhHHHHHHHHHHHHHHHHhc---CeeeccCChHHeeeccCCcEEEEeccceEEecCc
Confidence            9999999999998765   589999999999999999999999   9999999999999999999999999999976433


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                         ..+.+||+.|+|||+++...+..++|.|||||++|||+.|.+||...       .+......++...+..|.  ...
T Consensus       198 ---T~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~-------~~~~iY~KI~~~~v~fP~--~fs  265 (355)
T KOG0616|consen  198 ---TWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDD-------NPIQIYEKILEGKVKFPS--YFS  265 (355)
T ss_pred             ---EEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCC-------ChHHHHHHHHhCcccCCc--ccC
Confidence               45679999999999999999999999999999999999999999732       222233444444444432  111


Q ss_pred             HHHHHHHHHHHhcCcCCCCCC
Q 042435          358 QDIILVSTIALACLRSKPKSR  378 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~R  378 (412)
                         ..+.+|+...++.|-.+|
T Consensus       266 ---~~~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  266 ---SDAKDLLKKLLQVDLTKR  283 (355)
T ss_pred             ---HHHHHHHHHHHhhhhHhh
Confidence               236788888888888888

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=2.5e-38  Score=304.14  Aligned_cols=221  Identities=24%  Similarity=0.352  Sum_probs=174.3

Q ss_pred             eeeeecCceEEEEEEeC-CCcEEEEEec-------------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAELP-DGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      +.||+|+||.||+|... +++.||+|.+                         +|+++......+...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999774 5889999965                         255555556667788899999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|.+++....   .+++..+..++.|++.||+|||++   +++||||||+|||++.++.+||+|||+++..........
T Consensus        81 g~L~~~i~~~~---~l~~~~~~~~~~ql~~~L~~lH~~---~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~~  154 (320)
T cd05590          81 GDLMFHIQKSR---RFDEARARFYAAEITSALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTS  154 (320)
T ss_pred             chHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCccc
Confidence            99998886543   588999999999999999999998   999999999999999999999999999876433333334


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  ..   ....
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~-------~~~~~~~~i~~~~~~~~--~~---~~~~  222 (320)
T cd05590         155 TFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAE-------NEDDLFEAILNDEVVYP--TW---LSQD  222 (320)
T ss_pred             ccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCC-------CHHHHHHHHhcCCCCCC--CC---CCHH
Confidence            457999999999999889999999999999999999999998732       11111112222111111  11   1223


Q ss_pred             HHHHHHhcCcCCCCCCCCH------HHHHHH
Q 042435          363 VSTIALACLRSKPKSRPTM------QRISQE  387 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs~------~evl~~  387 (412)
                      +.+++.+|++.||++||++      ++++++
T Consensus       223 ~~~li~~~L~~dP~~R~~~~~~~~~~~~~~h  253 (320)
T cd05590         223 AVDILKAFMTKNPTMRLGSLTLGGEEAILRH  253 (320)
T ss_pred             HHHHHHHHcccCHHHCCCCCCCCCHHHHHcC
Confidence            7789999999999999998      666554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=2.8e-38  Score=304.25  Aligned_cols=221  Identities=22%  Similarity=0.313  Sum_probs=175.8

Q ss_pred             eeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEEEeccCC
Q 042435          149 YCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIYEYMERG  203 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~g  203 (412)
                      +.||+|+||.||++.. .+|+.||+|.+                        +|+++......+...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            3699999999999976 46899999965                        4666666666778888999999999999


Q ss_pred             ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCccc
Q 042435          204 SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTL  283 (412)
Q Consensus       204 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~  283 (412)
                      +|..++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++...........
T Consensus        81 ~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~  154 (323)
T cd05595          81 ELFFHLSRER---VFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKT  154 (323)
T ss_pred             cHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCcccc
Confidence            9988876543   589999999999999999999998   9999999999999999999999999998754333333344


Q ss_pred             ccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHH
Q 042435          284 QAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILV  363 (412)
Q Consensus       284 ~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (412)
                      ..||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  ...   ...+
T Consensus       155 ~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~-------~~~~~~~~~~~~~~~~p--~~~---~~~~  222 (323)
T cd05595         155 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-------DHERLFELILMEEIRFP--RTL---SPEA  222 (323)
T ss_pred             ccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCC-------CHHHHHHHHhcCCCCCC--CCC---CHHH
Confidence            57999999999999889999999999999999999999998622       11111122222221111  111   2237


Q ss_pred             HHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          364 STIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       364 ~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                      .+++.+||+.||++||     ++.+++++
T Consensus       223 ~~li~~~L~~dP~~R~~~~~~~~~~~l~h  251 (323)
T cd05595         223 KSLLAGLLKKDPKQRLGGGPSDAKEVMEH  251 (323)
T ss_pred             HHHHHHHccCCHHHhCCCCCCCHHHHHcC
Confidence            7899999999999998     88888764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=3.4e-38  Score=298.59  Aligned_cols=232  Identities=23%  Similarity=0.268  Sum_probs=174.1

Q ss_pred             cCcccceeeeecCceEEEEEEeC--CCcEEEEEecc--------------------------CCccccceEEEe-----c
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP--DGKVVALKKLH--------------------------HSETEDSAFVVY-----S  189 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~--~~~~vAvK~l~--------------------------~~~~~~~~~~~~-----~  189 (412)
                      ++|++.+.||+|+||.||+|...  +++.||+|.++                          |+++.....++.     .
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~   80 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   80 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCC
Confidence            36888999999999999999762  46889999653                          455555444443     2


Q ss_pred             CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      ....++||||++ ++|.+++..... ..+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus        81 ~~~~~lv~e~~~-~~l~~~~~~~~~-~~~~~~~~~~i~~qi~~aL~~lH~~---~iiH~dlkp~Nil~~~~~~~kl~Dfg  155 (290)
T cd07862          81 ETKLTLVFEHVD-QDLTTYLDKVPE-PGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFG  155 (290)
T ss_pred             CCcEEEEEccCC-CCHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEcCCCCEEEcccc
Confidence            456899999996 688888865432 2489999999999999999999998   99999999999999999999999999


Q ss_pred             CccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhh---
Q 042435          270 TVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ---  346 (412)
Q Consensus       270 la~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~---  346 (412)
                      +++..... .......||+.|+|||.+.+..++.++|||||||++|||++|+.||......       ..+..+.+.   
T Consensus       156 ~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~-------~~~~~i~~~~~~  227 (290)
T cd07862         156 LARIYSFQ-MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV-------DQLGKILDVIGL  227 (290)
T ss_pred             ceEeccCC-cccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHH-------HHHHHHHHHhCC
Confidence            99865433 2233456899999999998888999999999999999999999998732110       001111100   


Q ss_pred             -------------------ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          347 -------------------RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       347 -------------------~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                                         ....+...........+.+++.+|++.||++|||+.|++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~h  287 (290)
T cd07862         228 PGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH  287 (290)
T ss_pred             CChhhchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhcC
Confidence                               00000000001112346789999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=3.1e-38  Score=294.02  Aligned_cols=237  Identities=25%  Similarity=0.390  Sum_probs=187.9

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeCCCcEEEEEec---------------------cCCccccceEEEecCceEEEEEE
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ++.++|++.+.||+|+||.||+|...+++.+|+|.+                     +|+++......+...+..++|||
T Consensus         3 ~~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   82 (261)
T cd05148           3 RPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITE   82 (261)
T ss_pred             CcHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEe
Confidence            345678899999999999999999888999999965                     35555555566778888999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++|+|.+++..... ..+++.++..++.|++.||+|||+.   +++||||||+||++++++.+||+|||++.......
T Consensus        83 ~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~i~~al~~lH~~---~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~  158 (261)
T cd05148          83 LMEKGSLLAFLRSPEG-QVLPVASLIDMACQVAEGMAYLEEQ---NSIHRDLAARNILVGEDLVCKVADFGLARLIKEDV  158 (261)
T ss_pred             ecccCCHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccCcceEEEcCCceEEEccccchhhcCCcc
Confidence            9999999999976432 3589999999999999999999998   99999999999999999999999999998664332


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                      .......++..|+|||......++.++||||||+++|+|++ |+.||...       .... ..+........+.+.   
T Consensus       159 ~~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~-------~~~~-~~~~~~~~~~~~~~~---  227 (261)
T cd05148         159 YLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGM-------NNHE-VYDQITAGYRMPCPA---  227 (261)
T ss_pred             ccccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcC-------CHHH-HHHHHHhCCcCCCCC---
Confidence            22233346678999999988889999999999999999998 89998632       1111 122222222222111   


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      .....+.+++.+||+.||++|||+.++++.|+.+
T Consensus       228 ~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~~  261 (261)
T cd05148         228 KCPQEIYKIMLECWAAEPEDRPSFKALREELDNI  261 (261)
T ss_pred             CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhcC
Confidence            2223478999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.3e-38  Score=303.36  Aligned_cols=219  Identities=24%  Similarity=0.331  Sum_probs=173.6

Q ss_pred             eeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEEEEeccCCce
Q 042435          151 IGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIYEYMERGSL  205 (412)
Q Consensus       151 lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~gsL  205 (412)
                      ||+|+||.||+|... +++.||+|.+                        +|+++......+...+..++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            699999999999774 5889999965                        456666666677888899999999999999


Q ss_pred             eeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCccccc
Q 042435          206 FCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA  285 (412)
Q Consensus       206 ~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~  285 (412)
                      .+++....   .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.............
T Consensus        81 ~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~  154 (312)
T cd05585          81 FHHLQREG---RFDLSRARFYTAELLCALENLHKF---NVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFC  154 (312)
T ss_pred             HHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCcccccc
Confidence            99886543   489999999999999999999998   999999999999999999999999999986443333334457


Q ss_pred             ccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHH
Q 042435          286 GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVST  365 (412)
Q Consensus       286 gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (412)
                      ||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  ..   ....+.+
T Consensus       155 gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~-------~~~~~~~~~~~~~~~~~--~~---~~~~~~~  222 (312)
T cd05585         155 GTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDE-------NVNEMYRKILQEPLRFP--DG---FDRDAKD  222 (312)
T ss_pred             CCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCC-------CHHHHHHHHHcCCCCCC--Cc---CCHHHHH
Confidence            999999999999999999999999999999999999998632       11111122222211111  11   1223778


Q ss_pred             HHHhcCcCCCCCCCC---HHHHHHH
Q 042435          366 IALACLRSKPKSRPT---MQRISQE  387 (412)
Q Consensus       366 l~~~Cl~~dP~~RPs---~~evl~~  387 (412)
                      ++.+||+.||++||+   +.|++++
T Consensus       223 li~~~L~~dp~~R~~~~~~~e~l~h  247 (312)
T cd05585         223 LLIGLLSRDPTRRLGYNGAQEIKNH  247 (312)
T ss_pred             HHHHHcCCCHHHcCCCCCHHHHHcC
Confidence            999999999999975   5666654

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=2.4e-38  Score=305.83  Aligned_cols=230  Identities=23%  Similarity=0.310  Sum_probs=175.8

Q ss_pred             CcccceeeeecCceEEEEEEe----CCCcEEEEEecc--------------------------CCccccceEEEecCceE
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL----PDGKVVALKKLH--------------------------HSETEDSAFVVYSPQCM  193 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~----~~~~~vAvK~l~--------------------------~~~~~~~~~~~~~~~~~  193 (412)
                      +|++.+.||+|+||.||+++.    .+++.||+|.++                          |+++......+...+..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            588899999999999999965    368899999653                          34444555556778889


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ++||||+++|+|.+++....   .+++.....++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.
T Consensus        81 ~lv~e~~~~g~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nili~~~~~~kl~DfG~~~~  154 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQRD---NFSEDEVRFYSGEIILALEHLHKL---GIVYRDIKLENILLDSEGHVVLTDFGLSKE  154 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHeEECCCCCEEEeeCcCCcc
Confidence            99999999999998886543   488999999999999999999998   999999999999999999999999999986


Q ss_pred             cCCCCC-CcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCc
Q 042435          274 LDVDSS-NRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP  351 (412)
Q Consensus       274 ~~~~~~-~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (412)
                      ...... ......||+.|+|||++.+. .++.++|||||||++|||+||+.||.....    ......+...+.. ..++
T Consensus       155 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~----~~~~~~~~~~~~~-~~~~  229 (332)
T cd05614         155 FLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGE----RNTQSEVSRRILK-CDPP  229 (332)
T ss_pred             ccccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCC----CCCHHHHHHHHhc-CCCC
Confidence            533322 22345799999999998765 478899999999999999999999863210    0000111111111 1111


Q ss_pred             cchhhHHHHHHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          352 INQKIIQDIILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                      .+..   ....+.+++.+||+.||++||     ++++++++
T Consensus       230 ~~~~---~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h  267 (332)
T cd05614         230 FPSF---IGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEH  267 (332)
T ss_pred             CCCC---CCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcC
Confidence            1111   122377899999999999999     77788765

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=4.1e-38  Score=303.84  Aligned_cols=228  Identities=22%  Similarity=0.317  Sum_probs=174.7

Q ss_pred             eeeeecCceEEEEEEeC-CCcEEEEEec-------------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAELP-DGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      +.||+|+||.||+|... +++.||+|.+                         +|+++......+...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            36999999999999764 6889999964                         356666666667788899999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|..++....   .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++..........
T Consensus        81 ~~L~~~~~~~~---~l~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~~  154 (329)
T cd05618          81 GDLMFHMQRQR---KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTS  154 (329)
T ss_pred             CCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCccc
Confidence            99988776543   589999999999999999999998   999999999999999999999999999875433333334


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCC-cchhhH-HhhhccCCccchhhHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGP-KIMLID-ILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~  360 (412)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||............ .....+ +.......  +..   ..
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~--p~~---~~  229 (329)
T cd05618         155 TFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRI--PRS---LS  229 (329)
T ss_pred             cccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCCCCC--CCC---CC
Confidence            457899999999999999999999999999999999999999632111100000 001111 11111111  111   12


Q ss_pred             HHHHHHHHhcCcCCCCCCCC------HHHHHHH
Q 042435          361 ILVSTIALACLRSKPKSRPT------MQRISQE  387 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs------~~evl~~  387 (412)
                      ..+.+++.+||+.||++||+      +.+++++
T Consensus       230 ~~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~h  262 (329)
T cd05618         230 VKAASVLKSFLNKDPKERLGCHPQTGFADIQGH  262 (329)
T ss_pred             HHHHHHHHHHhcCCHHHcCCCCCCCCHHHHhcC
Confidence            34778999999999999998      5677654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=3.8e-38  Score=303.99  Aligned_cols=221  Identities=22%  Similarity=0.292  Sum_probs=175.5

Q ss_pred             eeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEEEeccCC
Q 042435          149 YCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIYEYMERG  203 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~g  203 (412)
                      +.||+|+||.||++.. .+++.||+|.+                        +|+++......+...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            3699999999999976 46899999965                        3566666666778888999999999999


Q ss_pred             ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCccc
Q 042435          204 SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTL  283 (412)
Q Consensus       204 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~  283 (412)
                      +|.+++....   .+++.++..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++...........
T Consensus        81 ~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~  154 (328)
T cd05593          81 ELFFHLSRER---VFSEDRTRFYGAEIVSALDYLHSG---KIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKT  154 (328)
T ss_pred             CHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeEECCCCcEEEecCcCCccCCCccccccc
Confidence            9988876543   589999999999999999999998   9999999999999999999999999998764333333344


Q ss_pred             ccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHH
Q 042435          284 QAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILV  363 (412)
Q Consensus       284 ~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (412)
                      ..||+.|+|||++.+..++.++|||||||++|||++|+.||....       .......+.......  +...   ...+
T Consensus       155 ~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~-------~~~~~~~~~~~~~~~--p~~~---~~~~  222 (328)
T cd05593         155 FCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD-------HEKLFELILMEDIKF--PRTL---SADA  222 (328)
T ss_pred             ccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCC-------HHHHHHHhccCCccC--CCCC---CHHH
Confidence            579999999999998899999999999999999999999986321       111111111111111  1111   2237


Q ss_pred             HHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          364 STIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       364 ~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                      .+++.+||+.||++||     ++.|++++
T Consensus       223 ~~li~~~L~~dP~~R~~~~~~~~~~il~h  251 (328)
T cd05593         223 KSLLSGLLIKDPNKRLGGGPDDAKEIMRH  251 (328)
T ss_pred             HHHHHHHcCCCHHHcCCCCCCCHHHHhcC
Confidence            7899999999999997     89999876

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=2.9e-38  Score=303.84  Aligned_cols=221  Identities=25%  Similarity=0.348  Sum_probs=175.2

Q ss_pred             eeeeecCceEEEEEEeC-CCcEEEEEec-------------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAELP-DGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++||+|+||.||+|... +++.||+|.+                         +|+++......+...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            36899999999999774 5889999965                         345555556667788899999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|..++....   .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++..........
T Consensus        81 ~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~  154 (321)
T cd05591          81 GDLMFQIQRSR---KFDEPRSRFYAAEVTLALMFLHRH---GVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTT  154 (321)
T ss_pred             CcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeecccceecccCCcccc
Confidence            99988886543   588999999999999999999998   999999999999999999999999999875433333334


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  ...   ...
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~-------~~~~~~~~i~~~~~~~p--~~~---~~~  222 (321)
T cd05591         155 TFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEAD-------NEDDLFESILHDDVLYP--VWL---SKE  222 (321)
T ss_pred             ccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCC-------CHHHHHHHHHcCCCCCC--CCC---CHH
Confidence            457899999999999889999999999999999999999998732       11111222222221111  111   123


Q ss_pred             HHHHHHhcCcCCCCCCC-------CHHHHHHH
Q 042435          363 VSTIALACLRSKPKSRP-------TMQRISQE  387 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RP-------s~~evl~~  387 (412)
                      +.+++.+||+.||++||       ++.+++++
T Consensus       223 ~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~h  254 (321)
T cd05591         223 AVSILKAFMTKNPNKRLGCVASQGGEDAIKQH  254 (321)
T ss_pred             HHHHHHHHhccCHHHcCCCCCCCCCHHHHhcC
Confidence            77899999999999999       88888765

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=4.7e-38  Score=306.39  Aligned_cols=226  Identities=25%  Similarity=0.325  Sum_probs=172.1

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEEec
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      +|+..+.||+|+||.||+|... +++.||||.+                      +|+++......+...+..++||||+
T Consensus        75 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  154 (353)
T PLN00034         75 ELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFM  154 (353)
T ss_pred             HHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecC
Confidence            4556688999999999999764 6899999965                      4566666667778888999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++|+|.+..       ..++.....++.|++.||+|||++   +|+||||||+|||+++++.+||+|||+++........
T Consensus       155 ~~~~L~~~~-------~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~  224 (353)
T PLN00034        155 DGGSLEGTH-------IADEQFLADVARQILSGIAYLHRR---HIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDP  224 (353)
T ss_pred             CCCcccccc-------cCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEcccccceeccccccc
Confidence            999987532       245677788999999999999998   9999999999999999999999999999876543333


Q ss_pred             cccccccccccccccccC-----cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          281 RTLQAGTYGYIALELVYT-----MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~-----~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      .....||..|+|||++..     ...+.++|||||||++|||++|+.||....     ..................... 
T Consensus       225 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~-----~~~~~~~~~~~~~~~~~~~~~-  298 (353)
T PLN00034        225 CNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGR-----QGDWASLMCAICMSQPPEAPA-  298 (353)
T ss_pred             ccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCC-----CccHHHHHHHHhccCCCCCCC-
Confidence            344579999999998743     234568999999999999999999987210     000000111111111111111 


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                        .....+.+++.+||+.||++|||+.|++++
T Consensus       299 --~~~~~l~~li~~~l~~~P~~Rpt~~ell~h  328 (353)
T PLN00034        299 --TASREFRHFISCCLQREPAKRWSAMQLLQH  328 (353)
T ss_pred             --ccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence              122347899999999999999999999987

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-38  Score=299.60  Aligned_cols=249  Identities=22%  Similarity=0.375  Sum_probs=184.6

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEec----CceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYS----PQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~----~~~~~lv~e  198 (412)
                      ...+..++||+|.||.||||.+ +++.||||++                    +|+++.++...-..    .-..+||+|
T Consensus       210 ~pl~l~eli~~Grfg~V~KaqL-~~~~VAVKifp~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~  288 (534)
T KOG3653|consen  210 DPLQLLELIGRGRFGCVWKAQL-DNRLVAVKIFPEQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTE  288 (534)
T ss_pred             CchhhHHHhhcCccceeehhhc-cCceeEEEecCHHHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEee
Confidence            3445567899999999999999 4599999976                    45555544433222    347899999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhC------CCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHD------CTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~------~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      |.++|+|.++|..+    .++|....+|+..+++||+|||+.      +.|+|+|||||++|||+.+|+++.|+|||+|.
T Consensus       289 fh~kGsL~dyL~~n----tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl  364 (534)
T KOG3653|consen  289 FHPKGSLCDYLKAN----TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLAL  364 (534)
T ss_pred             eccCCcHHHHHHhc----cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeE
Confidence            99999999999876    499999999999999999999985      36789999999999999999999999999998


Q ss_pred             ccCCCCCC--cccccccccccccccccCcc-cC-----cccccHHHHHHHHHHHhCCCCcc--------cccc--cccCC
Q 042435          273 LLDVDSSN--RTLQAGTYGYIALELVYTMV-VT-----EKCVIYSFGVVALEVLMGTHPGE--------LLLS--LSSSS  334 (412)
Q Consensus       273 ~~~~~~~~--~~~~~gt~~y~aPE~~~~~~-~s-----~ksDv~S~Gvil~elltg~~P~~--------~~~~--~~~~~  334 (412)
                      .+......  ....+||.+|||||++.+.. +.     .+.||||+|.+||||+++-.-.+        ....  +....
T Consensus       365 ~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hP  444 (534)
T KOG3653|consen  365 RLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHP  444 (534)
T ss_pred             EecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCC
Confidence            87654332  23478999999999997532 22     36999999999999998643221        1100  00011


Q ss_pred             CCcchhhHHhhhccCCccchhhH--HHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCC
Q 042435          335 GPKIMLIDILYQRLSPPINQKII--QDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKK  396 (412)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  396 (412)
                      .-+....-++.++.+|..+..+.  ..+..+.+.+..||+.||+.|.|+.=|.+++.++....+
T Consensus       445 t~e~mq~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~~~  508 (534)
T KOG3653|consen  445 TLEEMQELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAELMMLWE  508 (534)
T ss_pred             CHHHHHHHHHhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhccCC
Confidence            11111222344455554443332  234458899999999999999999998888877665443

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-38  Score=308.86  Aligned_cols=228  Identities=23%  Similarity=0.315  Sum_probs=180.8

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc------------------------CCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||+|... +++.||+|.++                        |+++......+..++..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            46899999999999999999875 68999999763                        444444455567788999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++....   .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        81 e~~~~~~L~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~  154 (350)
T cd05573          81 EYMPGGDLMNLLIRKD---VFPEETARFYIAELVLALDSVHKL---GFIHRDIKPDNILIDADGHIKLADFGLCKKMNKA  154 (350)
T ss_pred             cCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEeecCCCCccCccc
Confidence            9999999999987653   588999999999999999999998   9999999999999999999999999999865433


Q ss_pred             C-----------------------------CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccc
Q 042435          278 S-----------------------------SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLL  328 (412)
Q Consensus       278 ~-----------------------------~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~  328 (412)
                      .                             .......||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~  234 (350)
T cd05573         155 KDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDT  234 (350)
T ss_pred             CcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCC
Confidence            2                             12234568999999999999999999999999999999999999987321


Q ss_pred             ccccCCCCcchhhHHhh--hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCC-HHHHHHH
Q 042435          329 SLSSSSGPKIMLIDILY--QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPT-MQRISQE  387 (412)
Q Consensus       329 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-~~evl~~  387 (412)
                             .......+..  .....+....   ....+.+++.+|+. ||.+||+ ++|++++
T Consensus       235 -------~~~~~~~i~~~~~~~~~p~~~~---~~~~~~~li~~ll~-dp~~R~~s~~~ll~h  285 (350)
T cd05573         235 -------LQETYNKIINWKESLRFPPDPP---VSPEAIDLICRLLC-DPEDRLGSFEEIKSH  285 (350)
T ss_pred             -------HHHHHHHHhccCCcccCCCCCC---CCHHHHHHHHHHcc-ChhhcCCCHHHHhcC
Confidence                   1111122222  1111111111   12347788999997 9999999 9999986

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=5.9e-38  Score=302.79  Aligned_cols=228  Identities=21%  Similarity=0.321  Sum_probs=175.8

Q ss_pred             eeeeecCceEEEEEEeC-CCcEEEEEec-------------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAELP-DGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++||+|+||.||+|... +++.||+|.+                         +|+++......+...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            36999999999999774 6889999965                         356666666777888899999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|.+++....   .+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|||+++..........
T Consensus        81 g~L~~~~~~~~---~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~  154 (329)
T cd05588          81 GDLMFHMQRQR---KLPEEHARFYSAEISLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTS  154 (329)
T ss_pred             CCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEECcCccccccccCCCccc
Confidence            99988876543   589999999999999999999998   999999999999999999999999999875332223334


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCC--CCcchhhHHhhhccCCccchhhHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSS--GPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ...||+.|+|||++.+..++.++|||||||++|||+||+.||+.........  ........+.......+  ..   ..
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~---~~  229 (329)
T cd05588         155 TFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQIRIP--RS---LS  229 (329)
T ss_pred             cccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCCCCCC--CC---CC
Confidence            4579999999999999999999999999999999999999997321111000  00011111122221111  11   12


Q ss_pred             HHHHHHHHhcCcCCCCCCCC------HHHHHHH
Q 042435          361 ILVSTIALACLRSKPKSRPT------MQRISQE  387 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs------~~evl~~  387 (412)
                      ..+.+++.+|++.||++||+      ++|++++
T Consensus       230 ~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h  262 (329)
T cd05588         230 VKASSVLKGFLNKDPKERLGCHPQTGFRDIKSH  262 (329)
T ss_pred             HHHHHHHHHHhccCHHHcCCCCCCCCHHHHhcC
Confidence            24788999999999999997      6777654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=5.1e-38  Score=304.16  Aligned_cols=238  Identities=23%  Similarity=0.305  Sum_probs=180.0

Q ss_pred             cCcccceeeeecCceEEEEEEeC------CCcEEEEEecc-----------------------CCccccceEEEe-cCce
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKLH-----------------------HSETEDSAFVVY-SPQC  192 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l~-----------------------~~~~~~~~~~~~-~~~~  192 (412)
                      ++|++.+.||+|+||.||+|...      +++.||+|+++                       |+++......+. ....
T Consensus         7 ~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~~~   86 (337)
T cd05054           7 DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPGGP   86 (337)
T ss_pred             HHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCCCC
Confidence            46889999999999999999642      35789999764                       333333333343 3456


Q ss_pred             EEEEEEeccCCceeeeeccCcc----------------------------------------------------------
Q 042435          193 MFFIYEYMERGSLFCVLRDDDE----------------------------------------------------------  214 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~----------------------------------------------------------  214 (412)
                      .++++||+++|+|.+++.....                                                          
T Consensus        87 ~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (337)
T cd05054          87 LMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELY  166 (337)
T ss_pred             EEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHh
Confidence            8899999999999888753211                                                          


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC--cccccccccccc
Q 042435          215 AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIA  292 (412)
Q Consensus       215 ~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~a  292 (412)
                      ...++|..+..++.|++.||+|||+.   +|+||||||+||++++++.++|+|||+++.+......  .....++..|+|
T Consensus       167 ~~~l~~~~~~~~~~qi~~aL~~lH~~---~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~a  243 (337)
T cd05054         167 KEPLTLEDLISYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMA  243 (337)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccC
Confidence            12589999999999999999999998   9999999999999999999999999999875433221  223356678999


Q ss_pred             cccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcC
Q 042435          293 LELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACL  371 (412)
Q Consensus       293 PE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl  371 (412)
                      ||++.+..++.++|||||||++|||++ |..||...       .........+........+.   .....+.+++.+||
T Consensus       244 PE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~cl  313 (337)
T cd05054         244 PESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGV-------QIDEEFCRRLKEGTRMRAPE---YATPEIYSIMLDCW  313 (337)
T ss_pred             cHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCC-------CccHHHHHHHhccCCCCCCc---cCCHHHHHHHHHHc
Confidence            999999999999999999999999998 99998631       11111222222222211111   11234789999999


Q ss_pred             cCCCCCCCCHHHHHHHHhcCCC
Q 042435          372 RSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       372 ~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      +.+|++||++.|++++|+.+.+
T Consensus       314 ~~~p~~RPs~~ell~~l~~~~~  335 (337)
T cd05054         314 HNNPEDRPTFSELVEILGDLLQ  335 (337)
T ss_pred             cCChhhCcCHHHHHHHHHHHHh
Confidence            9999999999999999987643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=6.5e-38  Score=300.79  Aligned_cols=220  Identities=23%  Similarity=0.322  Sum_probs=172.3

Q ss_pred             eeeeecCceEEEEEEeC-CCcEEEEEecc-------------------------CCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAELP-DGKVVALKKLH-------------------------HSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-------------------------~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      +.||+|+||.||+|... +|+.||+|.++                         |+++......+...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            36999999999999875 68899999653                         44555555567778899999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|..++....   .+++.+...++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++..........
T Consensus        81 g~L~~~i~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  154 (316)
T cd05620          81 GDLMFHIQDKG---RFDLYRATFYAAEIVCGLQFLHSK---GIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRAS  154 (316)
T ss_pred             CcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEeCccCCCeecccCCCcee
Confidence            99988886543   488999999999999999999998   999999999999999999999999999875433333334


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||....       . ....+.+.... +..+..   ....
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~-------~-~~~~~~~~~~~-~~~~~~---~~~~  222 (316)
T cd05620         155 TFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDD-------E-DELFESIRVDT-PHYPRW---ITKE  222 (316)
T ss_pred             ccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC-------H-HHHHHHHHhCC-CCCCCC---CCHH
Confidence            5679999999999999999999999999999999999999986321       1 11111111111 111111   1223


Q ss_pred             HHHHHHhcCcCCCCCCCCHH-HHHH
Q 042435          363 VSTIALACLRSKPKSRPTMQ-RISQ  386 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs~~-evl~  386 (412)
                      +.+++.+||+.||++||++. ++.+
T Consensus       223 ~~~li~~~l~~dP~~R~~~~~~~~~  247 (316)
T cd05620         223 SKDILEKLFERDPTRRLGVVGNIRG  247 (316)
T ss_pred             HHHHHHHHccCCHHHcCCChHHHHc
Confidence            77899999999999999984 5653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=9.5e-38  Score=295.03  Aligned_cols=239  Identities=20%  Similarity=0.217  Sum_probs=175.6

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ++|++.+.||+|+||.||+|+.. +++.||+|+++                       |+++......+...+..++|||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFE   80 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEe
Confidence            46899999999999999999875 68899999753                       3444444445677888999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |++++.+..+....   ..+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++......
T Consensus        81 ~~~~~~l~~~~~~~---~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~  154 (287)
T cd07848          81 YVEKNMLELLEEMP---NGVPPEKVRSYIYQLIKAIHWCHKN---DIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGS  154 (287)
T ss_pred             cCCCCHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccCcccccccc
Confidence            99987766443322   2488999999999999999999998   99999999999999999999999999998764332


Q ss_pred             C-CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccc------cC--CCCcchhhHHhh-h--
Q 042435          279 S-NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS------SS--SGPKIMLIDILY-Q--  346 (412)
Q Consensus       279 ~-~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~------~~--~~~~~~~~~~~~-~--  346 (412)
                      . ......|++.|+|||++.+..++.++|||||||++|||++|+.||.......      ..  ..+......... .  
T Consensus       155 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (287)
T cd07848         155 NANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRF  234 (287)
T ss_pred             cccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchh
Confidence            2 2234568999999999998889999999999999999999999986321100      00  000000000000 0  


Q ss_pred             -ccCCccc---hh-----hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          347 -RLSPPIN---QK-----IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       347 -~~~~~~~---~~-----~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                       ....+..   ..     .......+.+++.+||+.||++|||++|++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~h  284 (287)
T cd07848         235 HGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNH  284 (287)
T ss_pred             cccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence             0000000   00     00112348899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.4e-37  Score=289.77  Aligned_cols=234  Identities=23%  Similarity=0.344  Sum_probs=183.8

Q ss_pred             hcCcccceeeeecCceEEEEEEeCCCcEEEEEecc--------------------CCccccceEEEecCceEEEEEEecc
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLH--------------------HSETEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~--------------------~~~~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      .++|++.+.||+|++|.||+|...+++.||+|.++                    |+++......+...+..+++|||++
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   84 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMK   84 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeeccc
Confidence            45688899999999999999998788899999753                    4555555566777888999999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC-
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-  280 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~-  280 (412)
                      +++|.+++.... ...++|..+..++.|++.||.|||+.   +++||||||+||++++++.++|+|||+++........ 
T Consensus        85 ~~~L~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~  160 (261)
T cd05068          85 YGSLLEYLQGGA-GRALKLPQLIDMAAQVASGMAYLEAQ---NYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEA  160 (261)
T ss_pred             CCcHHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCcceEEEcCCCCEEECCcceEEEccCCcccc
Confidence            999999987643 23589999999999999999999998   9999999999999999999999999999876532211 


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      ......+..|+|||+..+..++.++||||||+++|||+| |+.||...       .. ......+......+...   ..
T Consensus       161 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~-------~~-~~~~~~~~~~~~~~~~~---~~  229 (261)
T cd05068         161 REGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGM-------TN-AEVLQQVDQGYRMPCPP---GC  229 (261)
T ss_pred             cCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCC-------CH-HHHHHHHHcCCCCCCCC---cC
Confidence            111223457999999998899999999999999999999 99998632       11 11122222221111111   12


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      ...+.+++.+||+.+|++||++.++.+.|++
T Consensus       230 ~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~  260 (261)
T cd05068         230 PKELYDIMLDCWKEDPDDRPTFETLQWKLED  260 (261)
T ss_pred             CHHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence            2348889999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=6.7e-38  Score=300.69  Aligned_cols=220  Identities=24%  Similarity=0.344  Sum_probs=173.7

Q ss_pred             eeeeecCceEEEEEEeC-CCcEEEEEec-------------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAELP-DGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      +.||+|+||.||+|... +++.||+|.+                         +|+++......+.+.+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            36999999999999874 5789999954                         456666666677888899999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|.+++....   .+++.+...++.|++.||+|||++   +++||||||+|||++.++.+||+|||+++..........
T Consensus        81 g~L~~~l~~~~---~~~~~~~~~~~~qi~~al~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  154 (316)
T cd05619          81 GDLMFHIQSCH---KFDLPRATFYAAEIICGLQFLHSK---GIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTC  154 (316)
T ss_pred             CcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCcee
Confidence            99998886543   588999999999999999999998   999999999999999999999999999875433333334


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||....       . ....+.+.... +..+..   ....
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~-------~-~~~~~~i~~~~-~~~~~~---~~~~  222 (316)
T cd05619         155 TFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHD-------E-EELFQSIRMDN-PCYPRW---LTRE  222 (316)
T ss_pred             eecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCC-------H-HHHHHHHHhCC-CCCCcc---CCHH
Confidence            4578999999999998899999999999999999999999986321       1 11111111111 111111   1223


Q ss_pred             HHHHHHhcCcCCCCCCCCHH-HHHH
Q 042435          363 VSTIALACLRSKPKSRPTMQ-RISQ  386 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs~~-evl~  386 (412)
                      +.+++.+||+.||++||++. ++.+
T Consensus       223 ~~~li~~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05619         223 AKDILVKLFVREPERRLGVKGDIRQ  247 (316)
T ss_pred             HHHHHHHHhccCHhhcCCChHHHHc
Confidence            77899999999999999997 6644

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=1.4e-37  Score=290.74  Aligned_cols=234  Identities=28%  Similarity=0.377  Sum_probs=182.8

Q ss_pred             hcCcccceeeeecCceEEEEEEeCC----CcEEEEEecc----------------------CCccccceEEEecCceEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPD----GKVVALKKLH----------------------HSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~----~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~l  195 (412)
                      .++|++.+.||+|+||.||+|.+..    ...||+|.++                      |+++......+...+..++
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~i   82 (266)
T cd05033           3 PSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMI   82 (266)
T ss_pred             hHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEE
Confidence            3578999999999999999998742    4589999653                      4555555555677888999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      +|||+++++|.+++.....  .+++.++..++.|++.||+|||+.   +|+||||||+||++++++.++|+|||+++...
T Consensus        83 v~e~~~~~~L~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~~~  157 (266)
T cd05033          83 ITEYMENGSLDKFLRENDG--KFTVGQLVGMLRGIASGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRRLE  157 (266)
T ss_pred             EEEcCCCCCHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCCEEECccchhhccc
Confidence            9999999999999876432  589999999999999999999998   99999999999999999999999999998764


Q ss_pred             CCCCCc--ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          276 VDSSNR--TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       276 ~~~~~~--~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ......  ....++..|+|||.+.+..++.++||||||+++|||++ |..||....        .....+.+......+.
T Consensus       158 ~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~--------~~~~~~~~~~~~~~~~  229 (266)
T cd05033         158 DSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMS--------NQDVIKAVEDGYRLPP  229 (266)
T ss_pred             ccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCC--------HHHHHHHHHcCCCCCC
Confidence            222111  12234678999999998899999999999999999998 999985221        1111222222111111


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      +.   .....+.+++.+||+.+|++||++.|++++|+++
T Consensus       230 ~~---~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         230 PM---DCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             CC---CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            11   1223478999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=8.9e-38  Score=297.90  Aligned_cols=240  Identities=20%  Similarity=0.276  Sum_probs=176.3

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEecc----------------------CCccccceEEEecCceEEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH----------------------HSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .++|++.+.||+|+||.||+|... +++.||+|.++                      |+++......+...+..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFE   83 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEE
Confidence            468999999999999999999875 68999999753                      4555555666778889999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |++ ++|.+++....  ..+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++......
T Consensus        84 ~~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~  157 (303)
T cd07869          84 YVH-TDLCQYMDKHP--GGLHPENVKLFLFQLLRGLSYIHQR---YILHRDLKPQNLLISDTGELKLADFGLARAKSVPS  157 (303)
T ss_pred             CCC-cCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECCCCcceeccCCC
Confidence            995 57877765433  2478889999999999999999998   99999999999999999999999999987554333


Q ss_pred             CCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc---------CCCCcchhhHH-----
Q 042435          279 SNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS---------SSGPKIMLIDI-----  343 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~---------~~~~~~~~~~~-----  343 (412)
                      .......+|+.|+|||++.+ ..++.++|||||||++|||++|+.||........         ...........     
T Consensus       158 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (303)
T cd07869         158 HTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPH  237 (303)
T ss_pred             ccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhccc
Confidence            33344568999999998865 4578899999999999999999999974211100         00000000000     


Q ss_pred             hh-hccCCccchhhH------HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          344 LY-QRLSPPINQKII------QDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       344 ~~-~~~~~~~~~~~~------~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .. .......+....      .....+.+++.+|++.||++|||+.|++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~h  288 (303)
T cd07869         238 FKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALSH  288 (303)
T ss_pred             cccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHHhcC
Confidence            00 000000000000      011246789999999999999999999864

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=8.5e-38  Score=300.88  Aligned_cols=220  Identities=21%  Similarity=0.328  Sum_probs=172.6

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEeccC-------------------------CccccceEEEecCceEEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHH-------------------------SETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~-------------------------~~~~~~~~~~~~~~~~~lv~  197 (412)
                      +|+..+.||+|+||.||+|.. .+|+.||+|.++.                         +.+......+...+..++||
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            477889999999999999976 4689999997642                         22333344466778899999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++....   .+++.++..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        81 Ey~~~g~L~~~i~~~~---~l~~~~~~~i~~qi~~al~~lH~~---~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~  154 (323)
T cd05615          81 EYVNGGDLMYHIQQVG---KFKEPQAVFYAAEISVGLFFLHRR---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVD  154 (323)
T ss_pred             cCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeccccccccCCC
Confidence            9999999998886543   589999999999999999999998   9999999999999999999999999998754333


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                      ........||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  ... 
T Consensus       155 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~-------~~~~~~~~i~~~~~~~p--~~~-  224 (323)
T cd05615         155 GVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGE-------DEDELFQSIMEHNVSYP--KSL-  224 (323)
T ss_pred             CccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCC-------CHHHHHHHHHhCCCCCC--ccC-
Confidence            33334456899999999999888999999999999999999999998732       11111222222222211  111 


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCH
Q 042435          358 QDIILVSTIALACLRSKPKSRPTM  381 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~  381 (412)
                        ...+.+++.+||+.||++|++.
T Consensus       225 --~~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05615         225 --SKEAVSICKGLMTKHPSKRLGC  246 (323)
T ss_pred             --CHHHHHHHHHHcccCHhhCCCC
Confidence              2237789999999999999974

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=1.5e-37  Score=290.14  Aligned_cols=234  Identities=24%  Similarity=0.321  Sum_probs=182.6

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc--------------------CCccccceEEEecCceEEEEEEecc
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH--------------------HSETEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~--------------------~~~~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      .+|++.+.||+|+||.||+|... +++.||+|.++                    |+++......+...+..+++|||++
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   85 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMT   85 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCC
Confidence            35778899999999999999764 58899999653                    4555555666777888999999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCc
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR  281 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~  281 (412)
                      +++|.+++..... ..+++..++.++.|++.||+|||+.   +++||||||+||++++++.+||+|||+++.........
T Consensus        86 ~~~L~~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~  161 (263)
T cd05052          86 YGNLLDYLRECNR-QEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTA  161 (263)
T ss_pred             CCcHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCcEEeCCCccccccccceeec
Confidence            9999998865432 2489999999999999999999998   99999999999999999999999999998654332111


Q ss_pred             -ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          282 -TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       282 -~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                       ....++..|+|||...+..++.++|||||||++|||++ |..||...        ......+.+........+..   .
T Consensus       162 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~--------~~~~~~~~~~~~~~~~~~~~---~  230 (263)
T cd05052         162 HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI--------DLSQVYELLEKGYRMERPEG---C  230 (263)
T ss_pred             cCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCC--------CHHHHHHHHHCCCCCCCCCC---C
Confidence             12234568999999988899999999999999999998 88897621        11111222222222222111   1


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      ...+.+++.+||+.||++|||+.|+++.|+.+
T Consensus       231 ~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         231 PPKVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             CHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence            23488899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=8.5e-38  Score=295.94  Aligned_cols=239  Identities=18%  Similarity=0.227  Sum_probs=175.5

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc----------------------CCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH----------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ++|++.+.||+|+||.||+|... +++.||+|.++                      |+++......+...+..++||||
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   84 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEY   84 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeC
Confidence            56889999999999999999764 68999999653                      45555555566777889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++ +|.+++....  ..+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.......
T Consensus        85 ~~~-~l~~~l~~~~--~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~  158 (288)
T cd07871          85 LDS-DLKQYLDNCG--NLMSMHNVKIFMFQLLRGLSYCHKR---KILHRDLKPQNLLINEKGELKLADFGLARAKSVPTK  158 (288)
T ss_pred             CCc-CHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEECcCcceeeccCCCc
Confidence            974 8888776443  2478899999999999999999998   999999999999999999999999999976543333


Q ss_pred             CcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccc------c--CCCCcc---------hhh
Q 042435          280 NRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS------S--SSGPKI---------MLI  341 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~------~--~~~~~~---------~~~  341 (412)
                      ......+++.|+|||.+.+ ..++.++||||+||++|||+||+.||.......      .  ......         ...
T Consensus       159 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (288)
T cd07871         159 TYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFR  238 (288)
T ss_pred             cccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhhh
Confidence            3344568999999998865 568899999999999999999999986321000      0  000000         000


Q ss_pred             HHhhhccCCcc-chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          342 DILYQRLSPPI-NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       342 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+...... ............+++.+|++.||++|||++|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~h  285 (288)
T cd07871         239 SYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALRH  285 (288)
T ss_pred             ccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence            00000000000 00000112247789999999999999999999864

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=2.6e-38  Score=294.87  Aligned_cols=227  Identities=31%  Similarity=0.446  Sum_probs=173.3

Q ss_pred             cceeeeecCceEEEEEEeC-----CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          147 IRYCIGTGGYDSVYKAELP-----DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       147 ~~~~lG~G~~g~Vy~~~~~-----~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +.+.||.|.||.||+|.+.     .+..|+||.+                      +|+++....+.+...+..++|+||
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~   82 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEY   82 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE-
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence            4678999999999999886     3678999965                      577777778888888889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++|+|.++|..... ..+++.++..|+.|+++||+|||++   +++|+||+++||++++++.+||+|||+++.......
T Consensus        83 ~~~g~L~~~L~~~~~-~~~~~~~~~~i~~~i~~~l~~Lh~~---~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~  158 (259)
T PF07714_consen   83 CPGGSLDDYLKSKNK-EPLSEQQRLSIAIQIAEALSYLHSN---NIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSK  158 (259)
T ss_dssp             -TTEBHHHHHHHTCT-TTSBHHHHHHHHHHHHHHHHHHHHT---TEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSS
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccc
Confidence            999999999987621 2589999999999999999999998   999999999999999999999999999987632211


Q ss_pred             C--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          280 N--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       280 ~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .  .........|+|||.+.+..++.++||||||+++||+++ |+.||...        ....+.+.+......+.+...
T Consensus       159 ~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~--------~~~~~~~~~~~~~~~~~~~~~  230 (259)
T PF07714_consen  159 YKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDY--------DNEEIIEKLKQGQRLPIPDNC  230 (259)
T ss_dssp             EEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTS--------CHHHHHHHHHTTEETTSBTTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc--------ccccccccccccccceeccch
Confidence            1  123456788999999998889999999999999999999 67887622        111122222222222222222


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                         ...+.+++.+||+.||++|||+.++++.|
T Consensus       231 ---~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  231 ---PKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             ---BHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             ---hHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence               22378899999999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=6.1e-38  Score=303.88  Aligned_cols=225  Identities=21%  Similarity=0.286  Sum_probs=181.6

Q ss_pred             hcCcccceeeeecCceEEEEEEeCC--CcEEEEEec------------------------cCCccccceEEEecCceEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPD--GKVVALKKL------------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~--~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      .++|++.+.||+|+||.||+|...+  +..||+|.+                        +|+++......+...+..++
T Consensus        29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l  108 (340)
T PTZ00426         29 YEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYL  108 (340)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEE
Confidence            3568899999999999999997643  368999964                        47777777788888899999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||||+++|+|.+++....   .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus       109 v~Ey~~~g~L~~~i~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~  182 (340)
T PTZ00426        109 VLEFVIGGEFFTFLRRNK---RFPNDVGCFYAAQIVLIFEYLQSL---NIVYRDLKPENLLLDKDGFIKMTDFGFAKVVD  182 (340)
T ss_pred             EEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEecCCCCeecC
Confidence            999999999999887553   488999999999999999999998   99999999999999999999999999998654


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ..   .....||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  ..
T Consensus       183 ~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~-------~~~~~~~~i~~~~~~~p--~~  250 (340)
T PTZ00426        183 TR---TYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYAN-------EPLLIYQKILEGIIYFP--KF  250 (340)
T ss_pred             CC---cceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCC-------CHHHHHHHHhcCCCCCC--CC
Confidence            32   23457899999999999888999999999999999999999998732       11111122222222111  11


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                      ..   ..+.+++.+|++.||++|+     +++|++++
T Consensus       251 ~~---~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h  284 (340)
T PTZ00426        251 LD---NNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEH  284 (340)
T ss_pred             CC---HHHHHHHHHHcccCHHHcCCCCCCCHHHHHcC
Confidence            11   2367899999999999995     89998876

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=9.8e-38  Score=299.45  Aligned_cols=235  Identities=23%  Similarity=0.374  Sum_probs=181.9

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCc----EEEEEec----------------------cCCccccceEEEecCceEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGK----VVALKKL----------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~----~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      .+|++.+.||+|+||.||+|.+. +++    .||+|.+                      +|+++....+.+.. +..++
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~-~~~~~   85 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT-STVQL   85 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcC-CCcee
Confidence            46899999999999999999763 343    4899975                      35566655555554 45789


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ++||+++|+|.+++.....  .+++...+.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus        86 v~e~~~~g~l~~~l~~~~~--~~~~~~~~~~~~qi~~~L~~LH~~---~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~  160 (316)
T cd05108          86 ITQLMPFGCLLDYVREHKD--NIGSQYLLNWCVQIAKGMNYLEER---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG  160 (316)
T ss_pred             eeecCCCCCHHHHHHhccc--cCCHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEecCCCcEEEcccccccccc
Confidence            9999999999998876432  488999999999999999999998   99999999999999999999999999998765


Q ss_pred             CCCCCc--ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          276 VDSSNR--TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       276 ~~~~~~--~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ......  ....++..|+|||++.+..++.++|||||||++|||++ |+.||+..        ....+..+.......+.
T Consensus       161 ~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~--------~~~~~~~~~~~~~~~~~  232 (316)
T cd05108         161 ADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI--------PASEISSILEKGERLPQ  232 (316)
T ss_pred             CCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCC--------CHHHHHHHHhCCCCCCC
Confidence            433221  12234678999999999999999999999999999998 99998632        11112223322222221


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                      +..   ....+.+++.+||+.||++||++.+++..|..+...
T Consensus       233 ~~~---~~~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~~  271 (316)
T cd05108         233 PPI---CTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  271 (316)
T ss_pred             CCC---CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHcC
Confidence            111   123478899999999999999999999999877643

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.3e-38  Score=288.75  Aligned_cols=240  Identities=22%  Similarity=0.202  Sum_probs=183.6

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEe--cCceEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVY--SPQCMFF  195 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~--~~~~~~l  195 (412)
                      .++|+..+.|++|+||.||+|+. ++++.||+|++                       +|+|++....++.  +-+.+|+
T Consensus        75 v~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~  154 (419)
T KOG0663|consen   75 VEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYI  154 (419)
T ss_pred             HHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeee
Confidence            45688889999999999999976 57999999976                       5788877766643  4567999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      |||||+. ||..++....  .++...++..++.|+++|++|||.+   .|+||||||+|+|++..|.+||+|||+|+.+.
T Consensus       155 VMe~~Eh-DLksl~d~m~--q~F~~~evK~L~~QlL~glk~lH~~---wilHRDLK~SNLLm~~~G~lKiaDFGLAR~yg  228 (419)
T KOG0663|consen  155 VMEYVEH-DLKSLMETMK--QPFLPGEVKTLMLQLLRGLKHLHDN---WILHRDLKTSNLLLSHKGILKIADFGLAREYG  228 (419)
T ss_pred             eHHHHHh-hHHHHHHhcc--CCCchHHHHHHHHHHHHHHHHHhhc---eeEecccchhheeeccCCcEEecccchhhhhc
Confidence            9999976 9999887665  2588889999999999999999999   99999999999999999999999999999988


Q ss_pred             CCCCCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccc-------------ccCCCCcchhh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSL-------------SSSSGPKIMLI  341 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~-------------~~~~~~~~~~~  341 (412)
                      ......+..+-|.+|+|||.+.+. .|++..|+||+|||+.|++++++-|.....+             ....++.....
T Consensus       229 sp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~l  308 (419)
T KOG0663|consen  229 SPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSEL  308 (419)
T ss_pred             CCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCcccc
Confidence            777777778889999999998875 5999999999999999999999876521100             00001110000


Q ss_pred             HHhh-hccCCccc----hhhHH--HHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          342 DILY-QRLSPPIN----QKIIQ--DIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       342 ~~~~-~~~~~~~~----~~~~~--~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..+. -.......    .....  ....-.+++...+..||++|.|++|.+++
T Consensus       309 p~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~h  361 (419)
T KOG0663|consen  309 PAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLKH  361 (419)
T ss_pred             chhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhcc
Confidence            0000 00000000    00000  11346788999999999999999999876

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=1.4e-37  Score=300.51  Aligned_cols=238  Identities=22%  Similarity=0.256  Sum_probs=182.5

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .++|++.+.||+|+||.||++... ++..+|+|.+                      +|+++......+...+..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEee
Confidence            367999999999999999999775 6888999954                      46677777777888889999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++|+|.+++....   .+++..+..++.|++.||+|||+.+  +|+||||||+||+++.++.+||+|||+++..... 
T Consensus        84 ~~~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~--~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-  157 (331)
T cd06649          84 HMDGGSLDQVLKEAK---RIPEEILGKVSIAVLRGLAYLREKH--QIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-  157 (331)
T ss_pred             cCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHhhcC--CEEcCCCChhhEEEcCCCcEEEccCccccccccc-
Confidence            999999999887543   4889999999999999999999752  6999999999999999999999999998765332 


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccccc------cc----CC--------------
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSL------SS----SS--------------  334 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~------~~----~~--------------  334 (412)
                       ......||..|+|||++.+..++.++|||||||++|||+||+.||......      ..    ..              
T Consensus       158 -~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (331)
T cd06649         158 -MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPP  236 (331)
T ss_pred             -ccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccccCCccccCcccccc
Confidence             223346899999999999889999999999999999999999998632100      00    00              


Q ss_pred             -----------CCcch---hhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          335 -----------GPKIM---LIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       335 -----------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                                 .+...   ..+.+.....+..+.  ......+.+++.+||+.||++|||++|++++-
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~  302 (331)
T cd06649         237 GRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPN--GVFTPDFQEFVNKCLIKNPAERADLKMLMNHT  302 (331)
T ss_pred             cccccccccccccchhHHHHHHHHHhCCCcCCCC--ccccHHHHHHHHHHccCCcccCCCHHHHhcCh
Confidence                       00000   000011111111000  01223488999999999999999999999874

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=2.3e-37  Score=288.78  Aligned_cols=239  Identities=21%  Similarity=0.250  Sum_probs=186.1

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc------------------------CCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||+|... +|+.||+|.++                        |+++......+...+..++||
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            67999999999999999999876 79999999653                        333333444466678899999


Q ss_pred             EeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          198 EYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      ||+++|+|.+++.... ....+++.++..++.+++.||+|||+.   +++||||||+||+++.++.++|+|||+++....
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~  158 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSK---RIMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecCCcChhhEEECCCCcEEEeccceeeeccC
Confidence            9999999998886432 223589999999999999999999998   999999999999999999999999999886544


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .........++..|+|||.+.+..++.++|||||||++|||++|+.||....      .......+.......++.+.  
T Consensus       159 ~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~--  230 (267)
T cd08224         159 KTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK------MNLYSLCKKIEKCDYPPLPA--  230 (267)
T ss_pred             CCcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCC------ccHHHHHhhhhcCCCCCCCh--
Confidence            3333344568889999999988889999999999999999999999985221      00001111111111121111  


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ......+.+++.+||..+|++|||+.+|++.|+++.
T Consensus       231 ~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         231 DHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             hhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence            122234789999999999999999999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=3.8e-38  Score=319.24  Aligned_cols=237  Identities=22%  Similarity=0.253  Sum_probs=178.9

Q ss_pred             HHHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEeccCCcc-----------------------ccceEEEec---
Q 042435          137 NLIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHHSET-----------------------EDSAFVVYS---  189 (412)
Q Consensus       137 ~l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~~~~-----------------------~~~~~~~~~---  189 (412)
                      +.....++|.+.+.||+|+||+||+|.. .+|+.||||.++....                       ......+..   
T Consensus        26 ~~~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~  105 (496)
T PTZ00283         26 TAKEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDP  105 (496)
T ss_pred             cccccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccc
Confidence            3445567999999999999999999965 5799999998754321                       111111111   


Q ss_pred             -----CceEEEEEEeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcE
Q 042435          190 -----PQCMFFIYEYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEA  263 (412)
Q Consensus       190 -----~~~~~lv~ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~  263 (412)
                           ....++||||+++|+|.+++.... ....+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+
T Consensus       106 ~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~---~IiHrDLKP~NILl~~~~~v  182 (496)
T PTZ00283        106 RNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSK---HMIHRDIKSANILLCSNGLV  182 (496)
T ss_pred             cCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEeCCCCE
Confidence                 113689999999999999886532 223588999999999999999999998   99999999999999999999


Q ss_pred             EEeecCCccccCCCC--CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhh
Q 042435          264 FVADFGTVRLLDVDS--SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLI  341 (412)
Q Consensus       264 kl~DfGla~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~  341 (412)
                      ||+|||+++......  .......||+.|+|||++.+..++.++|||||||++|||++|+.||....       ......
T Consensus       183 kL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~-------~~~~~~  255 (496)
T PTZ00283        183 KLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGEN-------MEEVMH  255 (496)
T ss_pred             EEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC-------HHHHHH
Confidence            999999998654322  12234579999999999999999999999999999999999999986321       111111


Q ss_pred             HHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          342 DILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ........ +.+..   ....+.+++.+||+.||++||++.+++++
T Consensus       256 ~~~~~~~~-~~~~~---~~~~l~~li~~~L~~dP~~RPs~~ell~~  297 (496)
T PTZ00283        256 KTLAGRYD-PLPPS---ISPEMQEIVTALLSSDPKRRPSSSKLLNM  297 (496)
T ss_pred             HHhcCCCC-CCCCC---CCHHHHHHHHHHcccChhhCcCHHHHHhC
Confidence            11111111 11111   12347889999999999999999999875

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=3.8e-38  Score=303.59  Aligned_cols=221  Identities=23%  Similarity=0.314  Sum_probs=174.8

Q ss_pred             eeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEEEeccCC
Q 042435          149 YCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIYEYMERG  203 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~g  203 (412)
                      +.||+|+||.||++.. .+|+.||+|.+                        +|+++......+...+..++||||+++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            3699999999999976 57899999965                        3566666666778888999999999999


Q ss_pred             ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHh-CCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          204 SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH-DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       204 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~-~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      +|..++....   .+++..+..++.|++.||+|||+ .   +|+||||||+|||++.++.+||+|||+++..........
T Consensus        81 ~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~lH~~~---~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~  154 (325)
T cd05594          81 ELFFHLSRER---VFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMK  154 (325)
T ss_pred             cHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhcC---CEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcccc
Confidence            9988876543   58999999999999999999997 6   899999999999999999999999999875433333334


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...||+.|+|||++.+..++.++|||||||++|||+||+.||...       ........+.......+  ...   ...
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~-------~~~~~~~~i~~~~~~~p--~~~---~~~  222 (325)
T cd05594         155 TFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-------DHEKLFELILMEEIRFP--RTL---SPE  222 (325)
T ss_pred             cccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCC-------CHHHHHHHHhcCCCCCC--CCC---CHH
Confidence            457999999999999889999999999999999999999998621       11111111111111111  111   223


Q ss_pred             HHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          363 VSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                      +.+++.+||+.||++|+     ++.+++++
T Consensus       223 ~~~li~~~L~~dP~~R~~~~~~~~~~il~h  252 (325)
T cd05594         223 AKSLLSGLLKKDPKQRLGGGPDDAKEIMQH  252 (325)
T ss_pred             HHHHHHHHhhcCHHHhCCCCCCCHHHHhcC
Confidence            77899999999999996     89999866

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=1.2e-37  Score=307.41  Aligned_cols=241  Identities=20%  Similarity=0.295  Sum_probs=186.0

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeC------CCcEEEEEecc-----------------------CCccccceEEEecC
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKLH-----------------------HSETEDSAFVVYSP  190 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~  190 (412)
                      ...++|.+.++||+|+||.||+|...      .+..||||+++                       |+++......+...
T Consensus        34 ~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~  113 (400)
T cd05105          34 FPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKS  113 (400)
T ss_pred             ccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccC
Confidence            34568889999999999999999752      23579999652                       67777777778888


Q ss_pred             ceEEEEEEeccCCceeeeeccCcc--------------------------------------------------------
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDE--------------------------------------------------------  214 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~--------------------------------------------------------  214 (412)
                      +..++|||||++|+|.++++....                                                        
T Consensus       114 ~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (400)
T cd05105         114 GPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLE  193 (400)
T ss_pred             CceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhh
Confidence            999999999999999887754210                                                        


Q ss_pred             -------------------------------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe
Q 042435          215 -------------------------------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL  257 (412)
Q Consensus       215 -------------------------------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl  257 (412)
                                                           ...+++..+..++.|+++||+|||+.   +++||||||+||++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dikp~Nill  270 (400)
T cd05105         194 IKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASK---NCVHRDLAARNVLL  270 (400)
T ss_pred             hhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHhEEE
Confidence                                                 12478889999999999999999998   99999999999999


Q ss_pred             cCCCcEEEeecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCC
Q 042435          258 NSNLEAFVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSS  334 (412)
Q Consensus       258 ~~~~~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~  334 (412)
                      +.++.+||+|||+++.......  ......++..|+|||.+.+..++.++|||||||++|||++ |..||....      
T Consensus       271 ~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~------  344 (400)
T cd05105         271 AQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMI------  344 (400)
T ss_pred             eCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccc------
Confidence            9999999999999986543221  1223356788999999998889999999999999999997 999986321      


Q ss_pred             CCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          335 GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                       ........+......+.+.   .....+.+++.+||+.||++|||+.++.+.|++..+
T Consensus       345 -~~~~~~~~~~~~~~~~~~~---~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~~  399 (400)
T cd05105         345 -VDSTFYNKIKSGYRMAKPD---HATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLLP  399 (400)
T ss_pred             -hhHHHHHHHhcCCCCCCCc---cCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHcC
Confidence             1111112222221111111   122347899999999999999999999999987643

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=6.6e-38  Score=292.91  Aligned_cols=234  Identities=25%  Similarity=0.329  Sum_probs=179.9

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc---------------------CCccccceEEEecCceEEEEEEe
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH---------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~---------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      .++|++.+.||+|+||.||+|.. .+++.||+|.++                     |+++......+...+..++||||
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~   87 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEY   87 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeC
Confidence            35789999999999999999976 578899999653                     45555555567778889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++++|.++++...   .+++.++..++.|++.||+|||+.   +|+||||||+||+++.++.++|+|||+++.......
T Consensus        88 ~~~~~L~~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~  161 (267)
T cd06646          88 CGGGSLQDIYHVTG---PLSELQIAYVCRETLQGLAYLHSK---GKMHRDIKGANILLTDNGDVKLADFGVAAKITATIA  161 (267)
T ss_pred             CCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEECcCccceeeccccc
Confidence            99999999886543   588999999999999999999998   999999999999999999999999999986643333


Q ss_pred             Cccccccccccccccccc---CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          280 NRTLQAGTYGYIALELVY---TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~---~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      ......|+..|+|||.+.   ...++.++|||||||++|||++|+.||......       ............++.....
T Consensus       162 ~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~~  234 (267)
T cd06646         162 KRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPM-------RALFLMSKSNFQPPKLKDK  234 (267)
T ss_pred             ccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchh-------hhheeeecCCCCCCCCccc
Confidence            333456889999999874   345788999999999999999999998532111       0000111111111111111


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      ......+.+++.+||+.+|++|||+++++++|
T Consensus       235 ~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l  266 (267)
T cd06646         235 TKWSSTFHNFVKISLTKNPKKRPTAERLLTHL  266 (267)
T ss_pred             cccCHHHHHHHHHHhhCChhhCcCHHHHhcCC
Confidence            11223478999999999999999999998764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=1.2e-37  Score=292.98  Aligned_cols=236  Identities=21%  Similarity=0.283  Sum_probs=180.9

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC------CCcEEEEEecc----------------------CCccccceEEEecCce
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKLH----------------------HSETEDSAFVVYSPQC  192 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~  192 (412)
                      .+++|++.+.||+|+||.||+|...      +++.||+|.++                      |+++......+.....
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~   83 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP   83 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            4678999999999999999999753      35679999653                      4555555556777788


Q ss_pred             EEEEEEeccCCceeeeeccCcc-------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEE
Q 042435          193 MFFIYEYMERGSLFCVLRDDDE-------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFV  265 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~-------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl  265 (412)
                      .++||||+++|+|.+++.....       ...++|.++..++.|++.||+|||+.   +++||||||+||++++++.++|
T Consensus        84 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~vH~dlkp~Nil~~~~~~~~l  160 (277)
T cd05062          84 TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKI  160 (277)
T ss_pred             eEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCcchheEEEcCCCCEEE
Confidence            9999999999999998865321       12468899999999999999999998   9999999999999999999999


Q ss_pred             eecCCccccCCCCCCc--ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhH
Q 042435          266 ADFGTVRLLDVDSSNR--TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLID  342 (412)
Q Consensus       266 ~DfGla~~~~~~~~~~--~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~  342 (412)
                      +|||+++.........  ....+++.|+|||++.+..++.++|||||||++|||++ |..||...       .. ....+
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~-------~~-~~~~~  232 (277)
T cd05062         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGM-------SN-EQVLR  232 (277)
T ss_pred             CCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCC-------CH-HHHHH
Confidence            9999987654322111  12345778999999998889999999999999999999 68887621       11 11122


Q ss_pred             HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      ..........+..   ....+.+++.+||+.||++|||+.|++++|++
T Consensus       233 ~~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~  277 (277)
T cd05062         233 FVMEGGLLDKPDN---CPDMLFELMRMCWQYNPKMRPSFLEIISSIKE  277 (277)
T ss_pred             HHHcCCcCCCCCC---CCHHHHHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence            2111111111111   12347889999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.1e-38  Score=305.82  Aligned_cols=231  Identities=20%  Similarity=0.331  Sum_probs=193.7

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEecCce-EEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVYSPQC-MFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~-~~lv  196 (412)
                      .++|...+.+|+|+||.++..+.+ +++.+++|++                       +|++++.....+..++. .+||
T Consensus         3 m~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Iv   82 (426)
T KOG0589|consen    3 MDNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIV   82 (426)
T ss_pred             cchhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEE
Confidence            357888999999999999999764 5788999954                       67888887777777777 9999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |+||+||+|.+.+...+ +..++...+.+++.|++.|+.|||++   .|+|||||+.||+++.+..+||+|||+|+.+..
T Consensus        83 m~Y~eGg~l~~~i~~~k-~~~f~E~~i~~~~~Q~~~av~ylH~~---~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~  158 (426)
T KOG0589|consen   83 MEYCEGGDLAQLIKEQK-GVLFPEERILKWFVQILLAVNYLHEN---RVLHRDLKCANIFLTKDKKVKLGDFGLAKILNP  158 (426)
T ss_pred             EeecCCCCHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHhh---hhhcccchhhhhhccccCceeecchhhhhhcCC
Confidence            99999999999998765 34688999999999999999999988   999999999999999999999999999999887


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .........||+.||+||.+.+.+|..|+|||||||++|||++-+.+|+..       ........+.... ..+.+.  
T Consensus       159 ~~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~-------~m~~Li~ki~~~~-~~Plp~--  228 (426)
T KOG0589|consen  159 EDSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKAS-------NMSELILKINRGL-YSPLPS--  228 (426)
T ss_pred             chhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCcc-------chHHHHHHHhhcc-CCCCCc--
Confidence            765667789999999999999999999999999999999999999998732       1122223333322 222222  


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                       .....+..++..|++.+|..||++.+++.+
T Consensus       229 -~ys~el~~lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  229 -MYSSELRSLVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             -cccHHHHHHHHHHhhcCCccCCCHHHHhhC
Confidence             233348889999999999999999999876

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=1.5e-37  Score=289.10  Aligned_cols=231  Identities=23%  Similarity=0.315  Sum_probs=180.5

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++|++.+.||+|+||.||+|++.++..+|+|.+                    +|+++......+...+..+++|||+++
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   83 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSN   83 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCC
Confidence            457888999999999999999877778999965                    355555555667777788999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC-c
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-R  281 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~-~  281 (412)
                      |+|.+++.....  .+++.+++.++.|++.||+|||+.   +++|+||||+||++++++.+||+|||.++........ .
T Consensus        84 ~~l~~~i~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~  158 (256)
T cd05113          84 GCLLNYLREHGK--RFQPSQLLEMCKDVCEGMAYLESK---QFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSS  158 (256)
T ss_pred             CcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCCEEECCCccceecCCCceeec
Confidence            999998875432  589999999999999999999998   9999999999999999999999999998765432211 1


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ....++..|+|||...+..++.++||||||+++|||++ |+.||....       . ....+.+...........   ..
T Consensus       159 ~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~-------~-~~~~~~~~~~~~~~~~~~---~~  227 (256)
T cd05113         159 VGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFN-------N-SETVEKVSQGLRLYRPHL---AS  227 (256)
T ss_pred             CCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCC-------H-HHHHHHHhcCCCCCCCCC---CC
Confidence            12235678999999988889999999999999999999 999986321       1 111122212111111111   12


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                      ..+.+++.+||+.||.+||++.++++.|+
T Consensus       228 ~~~~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         228 EKVYAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             HHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence            34889999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=7.6e-38  Score=301.21  Aligned_cols=216  Identities=25%  Similarity=0.341  Sum_probs=171.7

Q ss_pred             eeeeecCceEEEEEEeC-CCcEEEEEec-------------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAELP-DGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      +.||+|+||+||+|... +|+.||+|.+                         +|+++......+...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            36999999999999774 6899999964                         355666666667788899999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|..++....   .+++.....++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++..........
T Consensus        81 g~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~  154 (323)
T cd05575          81 GELFFHLQRER---SFPEPRARFYAAEIASALGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTS  154 (323)
T ss_pred             CCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCccc
Confidence            99988886543   588899999999999999999998   999999999999999999999999999875433333334


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  ...   ...
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~-------~~~~~~~~i~~~~~~~~--~~~---~~~  222 (323)
T cd05575         155 TFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR-------DTAEMYDNILNKPLRLK--PNI---SVS  222 (323)
T ss_pred             cccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCC-------CHHHHHHHHHcCCCCCC--CCC---CHH
Confidence            457999999999999989999999999999999999999998632       11111122222211111  111   234


Q ss_pred             HHHHHHhcCcCCCCCCCCHH
Q 042435          363 VSTIALACLRSKPKSRPTMQ  382 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs~~  382 (412)
                      +.+++.+|++.||++||++.
T Consensus       223 ~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         223 ARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             HHHHHHHHhhcCHHhCCCCC
Confidence            78899999999999999874

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.3e-37  Score=299.57  Aligned_cols=221  Identities=23%  Similarity=0.338  Sum_probs=175.1

Q ss_pred             eeeeecCceEEEEEEe----CCCcEEEEEec-------------------------cCCccccceEEEecCceEEEEEEe
Q 042435          149 YCIGTGGYDSVYKAEL----PDGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~----~~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +.||+|+||.||++..    .+++.||+|.+                         +|+++......+..++..++||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            5799999999999975    35789999964                         456666666677788899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++|+|.+++....   .+.+.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.......
T Consensus        82 ~~~~~L~~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  155 (323)
T cd05584          82 LSGGELFMHLEREG---IFMEDTACFYLSEISLALEHLHQQ---GIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGT  155 (323)
T ss_pred             CCCchHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCC
Confidence            99999998886543   477888889999999999999998   999999999999999999999999999875433333


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      ......||+.|+|||++.+..++.++|||||||++|||++|+.||....       .......+.......  +...   
T Consensus       156 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~-------~~~~~~~~~~~~~~~--~~~~---  223 (323)
T cd05584         156 VTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAEN-------RKKTIDKILKGKLNL--PPYL---  223 (323)
T ss_pred             cccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCC-------HHHHHHHHHcCCCCC--CCCC---
Confidence            3334579999999999998889999999999999999999999987321       111122222222211  1111   


Q ss_pred             HHHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                      ...+.+++.+||+.||++||     ++.+++++
T Consensus       224 ~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h  256 (323)
T cd05584         224 TPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSH  256 (323)
T ss_pred             CHHHHHHHHHHcccCHhHcCCCCCCCHHHHhcC
Confidence            22378899999999999999     78888775

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.5e-37  Score=304.82  Aligned_cols=238  Identities=20%  Similarity=0.213  Sum_probs=181.3

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEe---------------ccCCccccceEEEecCceEEEEEEeccCCcee
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKK---------------LHHSETEDSAFVVYSPQCMFFIYEYMERGSLF  206 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~---------------l~~~~~~~~~~~~~~~~~~~lv~ey~~~gsL~  206 (412)
                      ++|++.+.||+|+||.||++.. .+++.||+|.               ++|+++......+......++|+||+. ++|.
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~~-~~L~  170 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQRGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRYK-TDLY  170 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhhhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecCC-CCHH
Confidence            5799999999999999999966 5689999994               578899888888888899999999995 6888


Q ss_pred             eeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC-CCccccc
Q 042435          207 CVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS-SNRTLQA  285 (412)
Q Consensus       207 ~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~-~~~~~~~  285 (412)
                      .++....   .+++..++.++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++...... .......
T Consensus       171 ~~l~~~~---~l~~~~~~~i~~qi~~aL~ylH~~---~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~  244 (391)
T PHA03212        171 CYLAAKR---NIAICDILAIERSVLRAIQYLHEN---RIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWA  244 (391)
T ss_pred             HHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHhEEEcCCCCEEEEeCCccccccccccccccccc
Confidence            7776543   588999999999999999999998   99999999999999999999999999997543221 2223457


Q ss_pred             ccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcch----------------------hhHH
Q 042435          286 GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIM----------------------LIDI  343 (412)
Q Consensus       286 gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~----------------------~~~~  343 (412)
                      ||+.|+|||++.+..++.++|||||||++|||+||+.|+...............                      ....
T Consensus       245 gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  324 (391)
T PHA03212        245 GTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEI  324 (391)
T ss_pred             CccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHH
Confidence            999999999999889999999999999999999999886422111000000000                      0000


Q ss_pred             h----hhcc-CC---ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          344 L----YQRL-SP---PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       344 ~----~~~~-~~---~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .    .... .+   +...........+.+++.+||+.||++|||++|++++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~h  376 (391)
T PHA03212        325 YIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLDF  376 (391)
T ss_pred             HHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhcC
Confidence            0    0000 00   0001111223357889999999999999999999864

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=2e-37  Score=291.93  Aligned_cols=236  Identities=23%  Similarity=0.305  Sum_probs=180.8

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCc----EEEEEec----------------------cCCccccceEEEecCceEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGK----VVALKKL----------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~----~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ++|++.+.||+|+||.||+|.+. +++    .+++|.+                      .|+++......+ .....++
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~-~~~~~~~   85 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGIC-PGASLQL   85 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEE-CCCccEE
Confidence            46778899999999999999873 344    4777765                      344444444444 3456789


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ++||+++|+|.+++.....  .++|..+..++.|++.||+|||+.   +++||||||+||++++++.+||+|||+++...
T Consensus        86 i~e~~~~gsL~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~  160 (279)
T cd05111          86 VTQLSPLGSLLDHVRQHRD--SLDPQRLLNWCVQIAKGMYYLEEH---RMVHRNLAARNILLKSDSIVQIADFGVADLLY  160 (279)
T ss_pred             EEEeCCCCcHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEEcCCccceecc
Confidence            9999999999999875432  489999999999999999999998   99999999999999999999999999998654


Q ss_pred             CCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          276 VDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       276 ~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ....  ......++..|+|||.+.+..++.++||||||+++||+++ |+.||....        .....+.+......+.
T Consensus       161 ~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~--------~~~~~~~~~~~~~~~~  232 (279)
T cd05111         161 PDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMR--------PHEVPDLLEKGERLAQ  232 (279)
T ss_pred             CCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCC--------HHHHHHHHHCCCcCCC
Confidence            3322  1223456788999999988899999999999999999998 999986321        1112233332222221


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMK  395 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  395 (412)
                      +..   ....+.+++.+||..||++|||+.|+++.|+.+....
T Consensus       233 ~~~---~~~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~~~  272 (279)
T cd05111         233 PQI---CTIDVYMVMVKCWMIDENVRPTFKELANEFTRMARDP  272 (279)
T ss_pred             CCC---CCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHhCC
Confidence            111   1223678899999999999999999999998876544

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=1.2e-37  Score=299.09  Aligned_cols=221  Identities=24%  Similarity=0.318  Sum_probs=175.5

Q ss_pred             eeeeecCceEEEEEEeC-CCcEEEEEec-------------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAELP-DGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      +.||+|+||.||+|... +++.||+|.+                         +|+++......+...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999775 5889999965                         356666666677788899999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|..++....   .+++.++..++.|++.||+|||+.   +++||||||+||++++++.+||+|||+++..........
T Consensus        81 ~~L~~~~~~~~---~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~  154 (318)
T cd05570          81 GDLMFHIQRSG---RFDEPRARFYAAEIVLGLQFLHER---GIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTS  154 (318)
T ss_pred             CCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCccc
Confidence            99988876543   589999999999999999999998   999999999999999999999999999875333333333


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||....       .......+.......+  ..   ....
T Consensus       155 ~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~-------~~~~~~~i~~~~~~~~--~~---~~~~  222 (318)
T cd05570         155 TFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDD-------EDELFQSILEDEVRYP--RW---LSKE  222 (318)
T ss_pred             ceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCC-------HHHHHHHHHcCCCCCC--Cc---CCHH
Confidence            4568999999999999999999999999999999999999986321       1111111221111111  11   1224


Q ss_pred             HHHHHHhcCcCCCCCCCCH-----HHHHHH
Q 042435          363 VSTIALACLRSKPKSRPTM-----QRISQE  387 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs~-----~evl~~  387 (412)
                      +.+++.+||+.||++||++     .+++++
T Consensus       223 ~~~li~~~l~~dP~~R~s~~~~~~~~ll~~  252 (318)
T cd05570         223 AKSILKSFLTKNPEKRLGCLPTGEQDIKGH  252 (318)
T ss_pred             HHHHHHHHccCCHHHcCCCCCCCHHHHhcC
Confidence            7889999999999999999     888765

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=2.7e-37  Score=288.67  Aligned_cols=239  Identities=20%  Similarity=0.229  Sum_probs=186.2

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||+|.. .+++.||||.+                        +|+++......+...+..++++
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            5789999999999999999976 47899999954                        3455555555566778899999


Q ss_pred             EeccCCceeeeeccCcc-cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          198 EYMERGSLFCVLRDDDE-AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      ||+++|+|.+++..... ...++......++.|++.||+|||++   +++|+||||+||+++.++.++|+|||++.....
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~  158 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCCHHHEEEcCCCCEEECccccceeccc
Confidence            99999999888754321 22478889999999999999999998   999999999999999999999999999887654


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .........|++.|+|||.+.+..++.++|+||||+++|||++|+.||....      .......+.+.....++...  
T Consensus       159 ~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~--  230 (267)
T cd08228         159 KTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK------MNLFSLCQKIEQCDYPPLPT--  230 (267)
T ss_pred             hhHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCcccc------ccHHHHHHHHhcCCCCCCCh--
Confidence            3332334568889999999988889999999999999999999999985211      11111222222222222111  


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ......+.+++.+||+.+|++||++.+|++.|+.++
T Consensus       231 ~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~~  266 (267)
T cd08228         231 EHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQMH  266 (267)
T ss_pred             hhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence            122345889999999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=2.8e-37  Score=291.36  Aligned_cols=235  Identities=22%  Similarity=0.332  Sum_probs=181.1

Q ss_pred             cCcccceeeeecCceEEEEEEe-----CCCcEEEEEecc----------------------CCccccceEEEecCceEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-----PDGKVVALKKLH----------------------HSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-----~~~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~l  195 (412)
                      ++|++.+.||+|+||.||+|.+     .++..||+|.+.                      |+++......+...+..++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l   84 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCM   84 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEE
Confidence            4578889999999999999974     356789999763                      4555555556677788999


Q ss_pred             EEEeccCCceeeeeccCc--------------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC
Q 042435          196 IYEYMERGSLFCVLRDDD--------------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL  261 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~--------------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~  261 (412)
                      ||||+++|+|.+++....              ....+++.+.+.++.|++.||+|||++   +++||||||+||++++++
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~nili~~~~  161 (283)
T cd05090          85 LFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSH---FFVHKDLAARNILIGEQL  161 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhc---CeehhccccceEEEcCCC
Confidence            999999999998875321              122478999999999999999999998   999999999999999999


Q ss_pred             cEEEeecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcc
Q 042435          262 EAFVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKI  338 (412)
Q Consensus       262 ~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~  338 (412)
                      .+||+|||+++.......  ......++..|+|||++.+..++.++||||||+++|||++ |..||...       . ..
T Consensus       162 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~-------~-~~  233 (283)
T cd05090         162 HVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGF-------S-NQ  233 (283)
T ss_pred             cEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCC-------C-HH
Confidence            999999999986533221  1223345678999999988889999999999999999998 88887521       1 11


Q ss_pred             hhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          339 MLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      ...+.+......+.+..   ....+.+++.+||+.||++||++.++.++|.++
T Consensus       234 ~~~~~~~~~~~~~~~~~---~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~~  283 (283)
T cd05090         234 EVIEMVRKRQLLPCSED---CPPRMYSLMTECWQEGPSRRPRFKDIHTRLRSW  283 (283)
T ss_pred             HHHHHHHcCCcCCCCCC---CCHHHHHHHHHHcccCcccCcCHHHHHHHhhcC
Confidence            22233322222221111   123478899999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=1.4e-37  Score=293.33  Aligned_cols=226  Identities=21%  Similarity=0.253  Sum_probs=172.1

Q ss_pred             eeecCceEEEEEEe-CCCcEEEEEecc------------------------CCccccceEEEecCceEEEEEEeccCCce
Q 042435          151 IGTGGYDSVYKAEL-PDGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIYEYMERGSL  205 (412)
Q Consensus       151 lG~G~~g~Vy~~~~-~~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~ey~~~gsL  205 (412)
                      ||+|+||+||++.. .+++.||+|.+.                        |+++......+......++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            69999999999976 468999999763                        34444444456677889999999999999


Q ss_pred             eeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcccc
Q 042435          206 FCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ  284 (412)
Q Consensus       206 ~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~  284 (412)
                      .+++.... ....+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.++|+|||+++............
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~  157 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR---RIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGY  157 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCccceecCCCCcccccc
Confidence            87764322 223589999999999999999999998   99999999999999999999999999997665443333445


Q ss_pred             cccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHH
Q 042435          285 AGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVS  364 (412)
Q Consensus       285 ~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (412)
                      .||+.|+|||++.+..++.++|||||||++|||++|+.||....       ...............+. .........+.
T Consensus       158 ~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  229 (280)
T cd05608         158 AGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARG-------EKVENKELKQRILNDSV-TYPDKFSPASK  229 (280)
T ss_pred             CCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCC-------cchhHHHHHHhhcccCC-CCcccCCHHHH
Confidence            78999999999999999999999999999999999999986321       00011111111111110 00111223478


Q ss_pred             HHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          365 TIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       365 ~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                      +++.+||+.||++||     ++++++++
T Consensus       230 ~li~~~l~~~P~~R~~~~~~~~~~~l~h  257 (280)
T cd05608         230 SFCEALLAKDPEKRLGFRDGNCDGLRTH  257 (280)
T ss_pred             HHHHHHhcCCHHHhcCCCCCCHHHHhcC
Confidence            899999999999999     77788765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=1.6e-37  Score=299.46  Aligned_cols=228  Identities=20%  Similarity=0.299  Sum_probs=172.3

Q ss_pred             eeeeecCceEEEEEEe-CCCcEEEEEecc-------------------------CCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAEL-PDGKVVALKKLH-------------------------HSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-------------------------~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      +.||+|+||.||+|.. .+++.||+|.++                         |+++......+...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            3699999999999976 467899999764                         33444444556677889999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|..++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++..........
T Consensus        81 ~~L~~~~~~~~---~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~  154 (327)
T cd05617          81 GDLMFHMQRQR---KLPEEHARFYAAEICIALNFLHER---GIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTS  154 (327)
T ss_pred             CcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCcee
Confidence            99988776443   589999999999999999999998   999999999999999999999999999875333233334


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||+.................+......  .+..   ....
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~---~~~~  229 (327)
T cd05617         155 TFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIR--IPRF---LSVK  229 (327)
T ss_pred             cccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCCCC--CCCC---CCHH
Confidence            4579999999999999999999999999999999999999996321111001101111111111111  1111   1223


Q ss_pred             HHHHHHhcCcCCCCCCCC------HHHHHHH
Q 042435          363 VSTIALACLRSKPKSRPT------MQRISQE  387 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs------~~evl~~  387 (412)
                      +.+++.+||+.||++||+      +.++.++
T Consensus       230 ~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h  260 (327)
T cd05617         230 ASHVLKGFLNKDPKERLGCQPQTGFSDIKSH  260 (327)
T ss_pred             HHHHHHHHhccCHHHcCCCCCCCCHHHHHcC
Confidence            678999999999999998      4576554

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=1.2e-37  Score=291.70  Aligned_cols=235  Identities=23%  Similarity=0.339  Sum_probs=178.8

Q ss_pred             HHhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------cCCccccceEEEec------C
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------HHSETEDSAFVVYS------P  190 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------~~~~~~~~~~~~~~------~  190 (412)
                      ..+++.|++.+.||+|+||.||+|... +++.||+|.+                     +|+++......+..      .
T Consensus         2 ~~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (272)
T cd06637           2 RDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD   81 (272)
T ss_pred             CChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCC
Confidence            356788999999999999999999764 6889999975                     34555544444432      2


Q ss_pred             ceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCC
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGT  270 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGl  270 (412)
                      ...+++|||+++|+|.+++..... ..+++..+..++.|++.||+|||++   +++||||||+||++++++.++|+|||+
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~~~-~~l~~~~~~~~~~qi~~~l~~LH~~---~ivh~dl~~~nili~~~~~~~l~Dfg~  157 (272)
T cd06637          82 DQLWLVMEFCGAGSVTDLIKNTKG-NTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGV  157 (272)
T ss_pred             cEEEEEEEcCCCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHEEECCCCCEEEccCCC
Confidence            468999999999999998875432 2588999999999999999999998   999999999999999999999999999


Q ss_pred             ccccCCCCCCccccccccccccccccc-----CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhh
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVY-----TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY  345 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~  345 (412)
                      ++.............|+..|+|||++.     ...++.++|||||||++|||++|+.||.....       .........
T Consensus       158 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~-------~~~~~~~~~  230 (272)
T cd06637         158 SAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHP-------MRALFLIPR  230 (272)
T ss_pred             ceecccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCH-------HHHHHHHhc
Confidence            986544333344567899999999986     34578899999999999999999999863211       000111111


Q ss_pred             hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .........   .....+.+++.+||..||.+|||+.|++++
T Consensus       231 ~~~~~~~~~---~~~~~~~~li~~~l~~~p~~Rpt~~~il~~  269 (272)
T cd06637         231 NPAPRLKSK---KWSKKFQSFIESCLVKNHSQRPTTEQLMKH  269 (272)
T ss_pred             CCCCCCCCC---CcCHHHHHHHHHHcCCChhhCCCHHHHhhC
Confidence            110000001   112247899999999999999999999864

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=2.2e-37  Score=302.77  Aligned_cols=177  Identities=25%  Similarity=0.361  Sum_probs=152.2

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc------------------------CCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||+||+|... +++.||+|.++                        |+++......+.+....++||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            47899999999999999999764 68999999763                        445555556677888999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++....   .+++.....++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        81 E~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~lH~~---givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~  154 (363)
T cd05628          81 EFLPGGDMMTLLMKKD---TLTEEETQFYIAETVLAIDSIHQL---GFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKA  154 (363)
T ss_pred             cCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCCEEEeeccCccccccc
Confidence            9999999999987543   589999999999999999999998   9999999999999999999999999998754321


Q ss_pred             CC-----------------------------------CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCC
Q 042435          278 SS-----------------------------------NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTH  322 (412)
Q Consensus       278 ~~-----------------------------------~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~  322 (412)
                      ..                                   ......||+.|+|||++.+..++.++|||||||++|||++|+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~  234 (363)
T cd05628         155 HRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYP  234 (363)
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCC
Confidence            10                                   0123479999999999999999999999999999999999999


Q ss_pred             Ccc
Q 042435          323 PGE  325 (412)
Q Consensus       323 P~~  325 (412)
                      ||.
T Consensus       235 Pf~  237 (363)
T cd05628         235 PFC  237 (363)
T ss_pred             CCC
Confidence            996

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-37  Score=305.22  Aligned_cols=230  Identities=20%  Similarity=0.286  Sum_probs=178.3

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||+|+.. +++.||||.+                        +|+++......+.+++..++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            47899999999999999999774 6899999965                        3566666677788899999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++....   .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.++|+|||+++.+...
T Consensus        81 E~~~~g~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~  154 (364)
T cd05599          81 EYLPGGDMMTLLMKKD---TFTEEETRFYIAETILAIDSIHKL---GYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKS  154 (364)
T ss_pred             CCCCCcHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEeecccceecccc
Confidence            9999999999887543   489999999999999999999998   9999999999999999999999999998754321


Q ss_pred             CC--------------------------------------CcccccccccccccccccCcccCcccccHHHHHHHHHHHh
Q 042435          278 SS--------------------------------------NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM  319 (412)
Q Consensus       278 ~~--------------------------------------~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt  319 (412)
                      ..                                      ......||+.|+|||++.+..++.++|||||||++|||++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~  234 (364)
T cd05599         155 HRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLV  234 (364)
T ss_pred             ccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhc
Confidence            10                                      0012358999999999998899999999999999999999


Q ss_pred             CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCC---HHHHHHH
Q 042435          320 GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPT---MQRISQE  387 (412)
Q Consensus       320 g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs---~~evl~~  387 (412)
                      |..||....       .......+.........+.. ......+.+++.+|+. +|.+|++   +.|++++
T Consensus       235 G~~Pf~~~~-------~~~~~~~i~~~~~~~~~~~~-~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~h  296 (364)
T cd05599         235 GYPPFCSDN-------PQETYRKIINWKETLQFPDE-VPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKSH  296 (364)
T ss_pred             CCCCCCCCC-------HHHHHHHHHcCCCccCCCCC-CCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhcC
Confidence            999987321       11111111111111000010 0112236788888886 9999997   8888775

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=9.9e-38  Score=305.92  Aligned_cols=233  Identities=22%  Similarity=0.285  Sum_probs=180.7

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEE
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~  194 (412)
                      ...++|++.+.||+|+||.||++... +++.||+|.+                        +|+++......+.+++..+
T Consensus        40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~  119 (370)
T cd05596          40 MKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLY  119 (370)
T ss_pred             CCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence            34578999999999999999999774 6889999965                        3555666666677888999


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      +||||+++|+|.+++...    .++......++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++..
T Consensus       120 lv~Ey~~gg~L~~~l~~~----~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~  192 (370)
T cd05596         120 MVMEYMPGGDLVNLMSNY----DIPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKM  192 (370)
T ss_pred             EEEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEcCCCCEEEEeccceeec
Confidence            999999999999988654    377788888999999999999998   9999999999999999999999999999865


Q ss_pred             CCCCC-CcccccccccccccccccCc----ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          275 DVDSS-NRTLQAGTYGYIALELVYTM----VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       275 ~~~~~-~~~~~~gt~~y~aPE~~~~~----~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      ..... ......||+.|+|||++.+.    .++.++|||||||++|||++|+.||....       .......+......
T Consensus       193 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~-------~~~~~~~i~~~~~~  265 (370)
T cd05596         193 DANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADS-------LVGTYSKIMDHKNS  265 (370)
T ss_pred             cCCCcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCC-------HHHHHHHHHcCCCc
Confidence            43322 22345799999999998653    47889999999999999999999987321       11112222221111


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCC--CCCHHHHHHH
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKS--RPTMQRISQE  387 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~--RPs~~evl~~  387 (412)
                      ...+. .......+.+++.+|++.+|++  |||++|++++
T Consensus       266 ~~~~~-~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h  304 (370)
T cd05596         266 LTFPD-DIEISKQAKDLICAFLTDREVRLGRNGVDEIKSH  304 (370)
T ss_pred             CCCCC-cCCCCHHHHHHHHHHccChhhccCCCCHHHHhcC
Confidence            11111 1112234788999999999987  9999999876

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=3.3e-37  Score=290.28  Aligned_cols=238  Identities=24%  Similarity=0.383  Sum_probs=182.0

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCc----EEEEEecc----------------------CCccccceEEEecCceEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGK----VVALKKLH----------------------HSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~----~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~  194 (412)
                      .++|+..+.||+|+||.||+|.+ .+++    .||+|.++                      |+++......+. ....+
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~-~~~~~   84 (279)
T cd05109           6 ETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICL-TSTVQ   84 (279)
T ss_pred             hhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEc-CCCcE
Confidence            35688889999999999999975 3444    48999753                      344444444444 34578


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      +++||+++|+|.++++....  .+++..++.++.|++.||+|||+.   +++||||||+||++++++.+||+|||+++..
T Consensus        85 l~~~~~~~g~l~~~l~~~~~--~~~~~~~~~~~~qi~~~L~~lH~~---~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~  159 (279)
T cd05109          85 LVTQLMPYGCLLDYVRENKD--RIGSQDLLNWCVQIAKGMSYLEEV---RLVHRDLAARNVLVKSPNHVKITDFGLARLL  159 (279)
T ss_pred             EEEEcCCCCCHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEEcCCCcEEECCCCceeec
Confidence            99999999999999876432  489999999999999999999998   9999999999999999999999999999876


Q ss_pred             CCCCCCc--ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCc
Q 042435          275 DVDSSNR--TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPP  351 (412)
Q Consensus       275 ~~~~~~~--~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (412)
                      .......  ....++..|+|||...+..++.++|||||||++|||++ |..||+..        ........+......+
T Consensus       160 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~--------~~~~~~~~~~~~~~~~  231 (279)
T cd05109         160 DIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGI--------PAREIPDLLEKGERLP  231 (279)
T ss_pred             ccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCC--------CHHHHHHHHHCCCcCC
Confidence            4332211  12234678999999988889999999999999999998 89998632        1111222332222222


Q ss_pred             cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCC
Q 042435          352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKK  396 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  396 (412)
                      ...   .....+.+++.+||+.||++||++.|+++.|+.+.....
T Consensus       232 ~~~---~~~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~~~  273 (279)
T cd05109         232 QPP---ICTIDVYMIMVKCWMIDSECRPRFRELVDEFSRMARDPS  273 (279)
T ss_pred             CCc---cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcCCc
Confidence            111   122347889999999999999999999999988876543

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=2.5e-37  Score=290.91  Aligned_cols=234  Identities=24%  Similarity=0.333  Sum_probs=181.4

Q ss_pred             cCcccceeeeecCceEEEEEEeCC------CcEEEEEecc----------------------CCccccceEEEecCceEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPD------GKVVALKKLH----------------------HSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~------~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~  194 (412)
                      ++|.+.+.||+|+||.||+|...+      ++.||+|.++                      |+++......+......+
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   84 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPI   84 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeE
Confidence            468888999999999999997633      4789999753                      445555556677788899


Q ss_pred             EEEEeccCCceeeeeccCc-----------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcE
Q 042435          195 FIYEYMERGSLFCVLRDDD-----------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEA  263 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~-----------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~  263 (412)
                      +||||+++|+|.++++...           ....+++.+...++.|++.|++|||++   +++||||||+||+++.++.+
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~~  161 (280)
T cd05049          85 MVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ---HFVHRDLATRNCLVGYDLVV  161 (280)
T ss_pred             EEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeeccccccceEEEcCCCeE
Confidence            9999999999999886542           123478999999999999999999998   99999999999999999999


Q ss_pred             EEeecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchh
Q 042435          264 FVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIML  340 (412)
Q Consensus       264 kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~  340 (412)
                      +|+|||+++.......  ......+++.|+|||++.+..++.++||||||+++|||++ |+.||...       .. ...
T Consensus       162 kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~-------~~-~~~  233 (280)
T cd05049         162 KIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGL-------SN-EEV  233 (280)
T ss_pred             EECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCC-------CH-HHH
Confidence            9999999875433221  1123345788999999999999999999999999999998 99998622       11 112


Q ss_pred             hHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          341 IDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      .+.+........+.   .....+.+++.+||+.||++||++.|+++.|++
T Consensus       234 ~~~~~~~~~~~~~~---~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~~  280 (280)
T cd05049         234 IECITQGRLLQRPR---TCPSEVYDIMLGCWKRDPQQRINIKDIHERLQK  280 (280)
T ss_pred             HHHHHcCCcCCCCC---CCCHHHHHHHHHHcCCCcccCCCHHHHHHHhhC
Confidence            22222211111111   122348899999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=4.8e-37  Score=284.81  Aligned_cols=229  Identities=25%  Similarity=0.327  Sum_probs=183.4

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +|++.+.||+|++|.||+|... +++.|++|.+                       +|+++......+...+..++||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence            4778899999999999999774 6899999964                       456666666667788899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++++|.++++.... ..+++.++..++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||+++.......
T Consensus        81 ~~~~~L~~~l~~~~~-~~~~~~~~~~i~~~l~~al~~lH~~---~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~  156 (256)
T cd08529          81 AENGDLHKLLKMQRG-RPLPEDQVWRFFIQILLGLAHLHSK---KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTN  156 (256)
T ss_pred             CCCCcHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEeCCCCEEEcccccceeccCccc
Confidence            999999999876422 3589999999999999999999988   999999999999999999999999999987654433


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      ......|++.|+|||+..+..++.++|+||||+++|||++|+.||....       . ............++...   ..
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-------~-~~~~~~~~~~~~~~~~~---~~  225 (256)
T cd08529         157 FANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANN-------Q-GALILKIIRGVFPPVSQ---MY  225 (256)
T ss_pred             hhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC-------H-HHHHHHHHcCCCCCCcc---cc
Confidence            3344568899999999998889999999999999999999999987321       1 11111111111121111   22


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+.+++.+||+.+|++||++.+++++
T Consensus       226 ~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  253 (256)
T cd08529         226 SQQLAQLIDQCLTKDYRQRPDTFQLLRN  253 (256)
T ss_pred             CHHHHHHHHHHccCCcccCcCHHHHhhC
Confidence            2348899999999999999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=2.4e-37  Score=293.13  Aligned_cols=239  Identities=23%  Similarity=0.324  Sum_probs=184.2

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeC------CCcEEEEEec-----------------------cCCccccceEEEecC
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKL-----------------------HHSETEDSAFVVYSP  190 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~  190 (412)
                      ...++|++.+.||+|+||.||++...      ....+|+|.+                       +|+++......+...
T Consensus         9 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   88 (293)
T cd05053           9 LPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQE   88 (293)
T ss_pred             cCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCC
Confidence            34467888999999999999999763      2368999965                       345555555667778


Q ss_pred             ceEEEEEEeccCCceeeeeccC-------------cccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe
Q 042435          191 QCMFFIYEYMERGSLFCVLRDD-------------DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL  257 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~-------------~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl  257 (412)
                      +..+++|||+++|+|.++++..             .....+++..++.++.|++.||+|||+.   +|+||||||+||++
T Consensus        89 ~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~Nil~  165 (293)
T cd05053          89 GPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASK---KCIHRDLAARNVLV  165 (293)
T ss_pred             CCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHC---CccccccceeeEEE
Confidence            8899999999999999988642             1123589999999999999999999988   99999999999999


Q ss_pred             cCCCcEEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCC
Q 042435          258 NSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSS  334 (412)
Q Consensus       258 ~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~  334 (412)
                      ++++.+||+|||+++........  .....++..|+|||...+..++.++|||||||++||+++ |..||...       
T Consensus       166 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~-------  238 (293)
T cd05053         166 TEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGI-------  238 (293)
T ss_pred             cCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCC-------
Confidence            99999999999999865433211  122235678999999988889999999999999999998 88887621       


Q ss_pred             CCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          335 GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                       ......+..........+.   .....+.+++.+||+.||++|||+.|+++.|+++.
T Consensus       239 -~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~l~~~p~~Rps~~eil~~l~~~~  292 (293)
T cd05053         239 -PVEELFKLLKEGYRMEKPQ---NCTQELYHLMRDCWHEVPSQRPTFKQLVEDLDRML  292 (293)
T ss_pred             -CHHHHHHHHHcCCcCCCCC---CCCHHHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence             1111222222222211111   12234889999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.9e-38  Score=304.77  Aligned_cols=227  Identities=22%  Similarity=0.280  Sum_probs=187.7

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      +-|++++-||.|+.|.|-.|++ .+|+.+|||.+                        .|+|+.....++.+..++|+|.
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvl   91 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVL   91 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEE
Confidence            4578889999999999999966 67999999954                        5788888888899999999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|.|++++-..+   .+......+++.||+.|+.|+|..   +|+||||||+|+|+|.++++||+|||+|..-. .
T Consensus        92 Eyv~gGELFdylv~kG---~l~e~eaa~ff~QIi~gv~yCH~~---~icHRDLKpENlLLd~~~nIKIADFGMAsLe~-~  164 (786)
T KOG0588|consen   92 EYVPGGELFDYLVRKG---PLPEREAAHFFRQILDGVSYCHAF---NICHRDLKPENLLLDVKNNIKIADFGMASLEV-P  164 (786)
T ss_pred             EecCCchhHHHHHhhC---CCCCHHHHHHHHHHHHHHHHHhhh---cceeccCCchhhhhhcccCEeeeccceeeccc-C
Confidence            9999999999998765   588899999999999999999998   99999999999999999999999999998643 3


Q ss_pred             CCCcccccccccccccccccCcccC-cccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVT-EKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s-~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .....+.+|++.|.|||++.+.+|. .++||||.|||||.|+||+.||++.        .-..+..-+.... ..++...
T Consensus       165 gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDd--------Nir~LLlKV~~G~-f~MPs~I  235 (786)
T KOG0588|consen  165 GKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDD--------NIRVLLLKVQRGV-FEMPSNI  235 (786)
T ss_pred             CccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCc--------cHHHHHHHHHcCc-ccCCCcC
Confidence            3444566999999999999999886 6899999999999999999999832        1111111111111 1122222


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      .   .++.+|+.+|+..||+.|.|++||++|-
T Consensus       236 s---~eaQdLLr~ml~VDp~~RiT~~eI~kHP  264 (786)
T KOG0588|consen  236 S---SEAQDLLRRMLDVDPSTRITTEEILKHP  264 (786)
T ss_pred             C---HHHHHHHHHHhccCccccccHHHHhhCc
Confidence            2   2377899999999999999999999885

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=2.6e-37  Score=304.22  Aligned_cols=228  Identities=20%  Similarity=0.282  Sum_probs=174.0

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .|+..+.||+|+||+||+|.. .+++.||+|.+                        +|+++......+.+.+..++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            588899999999999999966 56889999975                        34555666666788889999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++|+|.+++....   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++......
T Consensus        82 ~~~gg~L~~~l~~~~---~~~e~~~~~~~~qi~~aL~~LH~~---givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~  155 (381)
T cd05626          82 YIPGGDMMSLLIRME---VFPEVLARFYIAELTLAIESVHKM---GFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTH  155 (381)
T ss_pred             cCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCcHHHEEECCCCCEEEeeCcCCccccccc
Confidence            999999999887543   478888899999999999999998   99999999999999999999999999976431100


Q ss_pred             C-----------------------------------------------CcccccccccccccccccCcccCcccccHHHH
Q 042435          279 S-----------------------------------------------NRTLQAGTYGYIALELVYTMVVTEKCVIYSFG  311 (412)
Q Consensus       279 ~-----------------------------------------------~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~G  311 (412)
                      .                                               ......||+.|+|||++.+..++.++||||||
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG  235 (381)
T cd05626         156 NSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVG  235 (381)
T ss_pred             ccccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehh
Confidence            0                                               00124699999999999988899999999999


Q ss_pred             HHHHHHHhCCCCcccccccccCCCCcchhhHHhhh--ccCCccchhhHHHHHHHHHHHHh--cCcCCCCCCCCHHHHHHH
Q 042435          312 VVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ--RLSPPINQKIIQDIILVSTIALA--CLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       312 vil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~--Cl~~dP~~RPs~~evl~~  387 (412)
                      |++|||+||+.||...       ........+...  ....+.....   ...+.+++.+  |+..+|..||+++|++++
T Consensus       236 ~il~elltG~~Pf~~~-------~~~~~~~~i~~~~~~~~~~~~~~~---s~~~~dli~~ll~~~~~~~~R~~~~~~l~h  305 (381)
T cd05626         236 VILFEMLVGQPPFLAP-------TPTETQLKVINWENTLHIPPQVKL---SPEAVDLITKLCCSAEERLGRNGADDIKAH  305 (381)
T ss_pred             hHHHHHHhCCCCCcCC-------CHHHHHHHHHccccccCCCCCCCC---CHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence            9999999999999732       111111122211  1111111111   1225566665  667777789999999886

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=3.6e-37  Score=291.49  Aligned_cols=237  Identities=24%  Similarity=0.337  Sum_probs=183.4

Q ss_pred             cCcccceeeeecCceEEEEEEe------CCCcEEEEEec---------------------cCCccccceEEEecCceEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL------PDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~------~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ++|.+.+.||+|+||.||++..      .++..+|+|.+                     +|+++......+...+..++
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM   84 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEE
Confidence            4688889999999999999974      23566899865                     45666666667788889999


Q ss_pred             EEEeccCCceeeeeccCc----------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEE
Q 042435          196 IYEYMERGSLFCVLRDDD----------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFV  265 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl  265 (412)
                      ||||+++++|.+++....          ....+++.+++.++.|++.||+|||++   +++||||||+||++++++.++|
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~---~i~H~dlkp~Nili~~~~~~kl  161 (288)
T cd05093          85 VFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKI  161 (288)
T ss_pred             EEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEccCCcEEe
Confidence            999999999998886432          112489999999999999999999998   9999999999999999999999


Q ss_pred             eecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhH
Q 042435          266 ADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLID  342 (412)
Q Consensus       266 ~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~  342 (412)
                      +|||+++........  .....++..|+|||++.+..++.++|||||||++|||+| |..||....       .......
T Consensus       162 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~-------~~~~~~~  234 (288)
T cd05093         162 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS-------NNEVIEC  234 (288)
T ss_pred             ccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC-------HHHHHHH
Confidence            999999865332211  122345778999999998889999999999999999998 899876221       1111111


Q ss_pred             HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      +..... ......   ....+.+++.+||+.||.+|||+.|+.+.|+++..
T Consensus       235 i~~~~~-~~~~~~---~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~  281 (288)
T cd05093         235 ITQGRV-LQRPRT---CPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAK  281 (288)
T ss_pred             HHcCCc-CCCCCC---CCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHH
Confidence            111111 111111   12248899999999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=5e-37  Score=285.95  Aligned_cols=232  Identities=25%  Similarity=0.389  Sum_probs=180.9

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEecc--------------------CCccccceEEEecCceEEEEEEeccC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLH--------------------HSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~--------------------~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++|++.++||+|+||.||+|..++++.||+|.+.                    |+++...... ...+..+++|||+++
T Consensus         6 ~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~-~~~~~~~~v~e~~~~   84 (260)
T cd05067           6 ETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAV-VTQEPIYIITEYMEN   84 (260)
T ss_pred             HHceeeeeeccCccceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEE-EccCCcEEEEEcCCC
Confidence            5688899999999999999999889999999764                    3333333333 345678999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC-CCc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS-SNR  281 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~-~~~  281 (412)
                      |+|.+++..... ..+++.++..++.|++.||+|||+.   +++||||||+||++++++.++|+|||++....... ...
T Consensus        85 ~~L~~~~~~~~~-~~~~~~~~~~i~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~  160 (260)
T cd05067          85 GSLVDFLKTPEG-IKLTINKLIDMAAQIAEGMAFIERK---NYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAR  160 (260)
T ss_pred             CCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHHhEEEcCCCCEEEccCcceeecCCCCcccc
Confidence            999998865432 3589999999999999999999988   99999999999999999999999999997654222 122


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ....++..|+|||++....++.++||||||+++||+++ |+.||....        .......+......+.+..   ..
T Consensus       161 ~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~---~~  229 (260)
T cd05067         161 EGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMT--------NPEVIQNLERGYRMPRPDN---CP  229 (260)
T ss_pred             cCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCC--------hHHHHHHHHcCCCCCCCCC---CC
Confidence            23345678999999988889999999999999999999 999986321        1112222222222221111   12


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      ..+.+++.+||+.+|++|||++++.+.|+.
T Consensus       230 ~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         230 EELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             HHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence            348899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.3e-37  Score=286.56  Aligned_cols=230  Identities=23%  Similarity=0.324  Sum_probs=178.2

Q ss_pred             CcccceeeeecCceEEEEEEeCCCcEEEEEecc--------------------CCccccceEEEecCceEEEEEEeccCC
Q 042435          144 YFHIRYCIGTGGYDSVYKAELPDGKVVALKKLH--------------------HSETEDSAFVVYSPQCMFFIYEYMERG  203 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~--------------------~~~~~~~~~~~~~~~~~~lv~ey~~~g  203 (412)
                      +|++.+.||+|+||.||+|.++++..+|+|.++                    |+++......+...+..++||||++++
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~   84 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANG   84 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCCC
Confidence            477889999999999999988878889999754                    344444444566777899999999999


Q ss_pred             ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC-cc
Q 042435          204 SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-RT  282 (412)
Q Consensus       204 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~-~~  282 (412)
                      +|.+++.....  .++|..+..++.|++.||+|||+.   +++||||||+||++++++.+||+|||+++........ ..
T Consensus        85 ~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~  159 (256)
T cd05059          85 CLLNYLRERKG--KLGTEWLLDMCSDVCEAMEYLESN---GFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQ  159 (256)
T ss_pred             CHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHhhEEECCCCcEEECCcccceecccccccccC
Confidence            99998875432  589999999999999999999998   9999999999999999999999999998765332111 11


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDII  361 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (412)
                      ...++..|+|||.+.+..++.++||||||+++||+++ |+.||+...       . ......+......+.+..   ...
T Consensus       160 ~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~-------~-~~~~~~~~~~~~~~~~~~---~~~  228 (256)
T cd05059         160 GTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFS-------N-SEVVESVSAGYRLYRPKL---APT  228 (256)
T ss_pred             CCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCC-------H-HHHHHHHHcCCcCCCCCC---CCH
Confidence            1234457999999998899999999999999999999 888986321       1 111122222211111111   223


Q ss_pred             HHHHHHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          362 LVSTIALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       362 ~~~~l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                      .+.+++.+||+.+|++|||+.|+++.|.
T Consensus       229 ~~~~li~~cl~~~p~~Rpt~~~~l~~l~  256 (256)
T cd05059         229 EVYTIMYSCWHEKPEDRPAFKKLLSQLT  256 (256)
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHHHHhC
Confidence            4889999999999999999999998873

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=4.3e-37  Score=291.44  Aligned_cols=237  Identities=24%  Similarity=0.326  Sum_probs=184.4

Q ss_pred             cCcccceeeeecCceEEEEEEeC------CCcEEEEEec---------------------cCCccccceEEEecCceEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      .+|.+.+.||+|+||.||+|...      ++..+++|.+                     +|+++......+...+..++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIM   84 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEE
Confidence            35778899999999999999642      3567888865                     46666666677788888999


Q ss_pred             EEEeccCCceeeeeccCcc-------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCc
Q 042435          196 IYEYMERGSLFCVLRDDDE-------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLE  262 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~  262 (412)
                      ||||+++++|.+++.....             ...++|..++.++.|++.||+|||++   +++||||||+||+++.++.
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~Nil~~~~~~  161 (291)
T cd05094          85 VFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ---HFVHRDLATRNCLVGANLL  161 (291)
T ss_pred             EEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEccCCc
Confidence            9999999999998865321             12489999999999999999999998   9999999999999999999


Q ss_pred             EEEeecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcch
Q 042435          263 AFVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIM  339 (412)
Q Consensus       263 ~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~  339 (412)
                      ++|+|||+++.......  ......++..|+|||++.+..++.++||||||+++|||+| |+.||....       . ..
T Consensus       162 ~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~-------~-~~  233 (291)
T cd05094         162 VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLS-------N-TE  233 (291)
T ss_pred             EEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC-------H-HH
Confidence            99999999976543221  1123456788999999998899999999999999999999 999986321       1 11


Q ss_pred             hhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          340 LIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      ..+............   .....+.+++.+||+.||++|||+.+|++.|+++..
T Consensus       234 ~~~~~~~~~~~~~~~---~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~  284 (291)
T cd05094         234 VIECITQGRVLERPR---VCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGK  284 (291)
T ss_pred             HHHHHhCCCCCCCCc---cCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHh
Confidence            112222211111111   122348899999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=2e-37  Score=298.56  Aligned_cols=219  Identities=24%  Similarity=0.289  Sum_probs=172.0

Q ss_pred             eeeeecCceEEEEEEeC-CCcEEEEEec-------------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAELP-DGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      +.||+|+||.||+|... +++.||+|.+                         +|+++......+...+..++||||+++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            36999999999999775 5788999964                         355666666667788899999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|.+++....   .+.......++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++..........
T Consensus        81 ~~L~~~~~~~~---~~~~~~~~~~~~qi~~~L~~lH~~---giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~~~  154 (325)
T cd05602          81 GELFYHLQRER---CFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTS  154 (325)
T ss_pred             CcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEEccCCCCcccccCCCCcc
Confidence            99998886543   477788888999999999999998   999999999999999999999999999975433333334


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  ..   ....
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~-------~~~~~~~~i~~~~~~~~--~~---~~~~  222 (325)
T cd05602         155 TFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR-------NTAEMYDNILNKPLQLK--PN---ITNS  222 (325)
T ss_pred             cccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCC-------CHHHHHHHHHhCCcCCC--CC---CCHH
Confidence            557999999999999999999999999999999999999998632       11111122222211111  11   1223


Q ss_pred             HHHHHHhcCcCCCCCCCCHHHHH
Q 042435          363 VSTIALACLRSKPKSRPTMQRIS  385 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs~~evl  385 (412)
                      +.+++.+|++.||.+||++.+.+
T Consensus       223 ~~~li~~~l~~~p~~R~~~~~~~  245 (325)
T cd05602         223 ARHLLEGLLQKDRTKRLGAKDDF  245 (325)
T ss_pred             HHHHHHHHcccCHHHCCCCCCCH
Confidence            77899999999999999877443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=3.4e-37  Score=311.74  Aligned_cols=230  Identities=21%  Similarity=0.226  Sum_probs=182.3

Q ss_pred             CcccceeeeecCceEEEEEEeC-C-CcEEEEEe---------------------ccCCccccceEEEecCceEEEEEEec
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-D-GKVVALKK---------------------LHHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~-~~~vAvK~---------------------l~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      .|.+.+.||+|+||.||+|... + ++.||+|.                     ++|+++......+...+..++||||+
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~  147 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYG  147 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECC
Confidence            3889999999999999999653 3 67888884                     36788888888888899999999999


Q ss_pred             cCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          201 ERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       201 ~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      ++|+|.+++.... ....+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.......
T Consensus       148 ~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~  224 (478)
T PTZ00267        148 SGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSR---KMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVS  224 (478)
T ss_pred             CCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCcCHHhEEECCCCcEEEEeCcCceecCCccc
Confidence            9999998876432 223588899999999999999999998   999999999999999999999999999987643321


Q ss_pred             --CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          280 --NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       280 --~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                        ......||+.|+|||++.+..++.++|||||||++|||++|+.||...       ...............+ .+..  
T Consensus       225 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~-------~~~~~~~~~~~~~~~~-~~~~--  294 (478)
T PTZ00267        225 LDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGP-------SQREIMQQVLYGKYDP-FPCP--  294 (478)
T ss_pred             cccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC-------CHHHHHHHHHhCCCCC-CCcc--
Confidence              123456999999999999989999999999999999999999998632       1111122222222111 1111  


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                       ....+.+++.+||+.||++||++++++.+
T Consensus       295 -~s~~~~~li~~~L~~dP~~Rps~~~~l~~  323 (478)
T PTZ00267        295 -VSSGMKALLDPLLSKNPALRPTTQQLLHT  323 (478)
T ss_pred             -CCHHHHHHHHHHhccChhhCcCHHHHHhC
Confidence             12347889999999999999999998753

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=8.1e-38  Score=301.84  Aligned_cols=229  Identities=21%  Similarity=0.307  Sum_probs=178.2

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEecc------------------------CCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||++.. .+|+.||+|.++                        |+++......+...+..++||
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            4789999999999999999976 468999999753                        455555556677788899999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++.....  .+++.....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        81 e~~~~~~L~~~l~~~~~--~l~~~~~~~~~~qi~~aL~~lH~~---~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~  155 (330)
T cd05601          81 EYQPGGDLLSLLNRYED--QFDEDMAQFYLAELVLAIHSVHQM---GYVHRDIKPENVLIDRTGHIKLADFGSAARLTAN  155 (330)
T ss_pred             CCCCCCCHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC---CeEcccCchHheEECCCCCEEeccCCCCeECCCC
Confidence            99999999999876522  588999999999999999999998   9999999999999999999999999999866443


Q ss_pred             CCC-ccccccccccccccccc------CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhc--c
Q 042435          278 SSN-RTLQAGTYGYIALELVY------TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQR--L  348 (412)
Q Consensus       278 ~~~-~~~~~gt~~y~aPE~~~------~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~--~  348 (412)
                      ... .....||+.|+|||++.      ...++.++|||||||++|||++|+.||....       .......+....  .
T Consensus       156 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~-------~~~~~~~i~~~~~~~  228 (330)
T cd05601         156 KMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGT-------SAKTYNNIMNFQRFL  228 (330)
T ss_pred             CceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCC-------HHHHHHHHHcCCCcc
Confidence            222 23346899999999986      4567889999999999999999999986321       111112221111  1


Q ss_pred             CCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          349 SPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       349 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..+...   .....+.+++.+|+. +|++|||+.+++++
T Consensus       229 ~~~~~~---~~~~~~~~li~~ll~-~p~~R~t~~~l~~h  263 (330)
T cd05601         229 KFPEDP---KVSSDFLDLIQSLLC-GQKERLGYEGLCCH  263 (330)
T ss_pred             CCCCCC---CCCHHHHHHHHHHcc-ChhhCCCHHHHhCC
Confidence            111111   112237788899997 99999999999865

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.4e-37  Score=300.84  Aligned_cols=237  Identities=26%  Similarity=0.349  Sum_probs=171.7

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEecC-----ceEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVYSP-----QCMF  194 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~-----~~~~  194 (412)
                      +|++.+.||+|+||.||+|.. .+++.||||+++                       |+++.....++...     ...+
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            478889999999999999976 468999999753                       44444444333221     3579


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      +||||+. ++|.+++....   .+++..+..++.|+++||+|||++   +|+||||||+|||++.++.+||+|||+++..
T Consensus        81 lv~e~~~-~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~  153 (338)
T cd07859          81 VVFELME-SDLHQVIKAND---DLTPEHHQFFLYQLLRALKYIHTA---NVFHRDLKPKNILANADCKLKICDFGLARVA  153 (338)
T ss_pred             EEEecCC-CCHHHHHHhcc---cCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEccCcccccc
Confidence            9999995 68888876543   589999999999999999999998   9999999999999999999999999999864


Q ss_pred             CCCCC---CcccccccccccccccccC--cccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcchhh
Q 042435          275 DVDSS---NRTLQAGTYGYIALELVYT--MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKIMLI  341 (412)
Q Consensus       275 ~~~~~---~~~~~~gt~~y~aPE~~~~--~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~~~~  341 (412)
                      .....   ......||+.|+|||++.+  ..++.++|||||||++|||+||+.||........        .........
T Consensus       154 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  233 (338)
T cd07859         154 FNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETIS  233 (338)
T ss_pred             ccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHH
Confidence            32221   1234568999999999865  6789999999999999999999999863211000        000000000


Q ss_pred             --------HH---hhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          342 --------DI---LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       342 --------~~---~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                              ..   +......+...........+.+++.+||+.||++|||++|++++
T Consensus       234 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~h  290 (338)
T cd07859         234 RVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALAD  290 (338)
T ss_pred             HhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence                    00   00000110000001112346789999999999999999999976

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.4e-37  Score=291.39  Aligned_cols=231  Identities=19%  Similarity=0.241  Sum_probs=176.6

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEecc------------------------CCccccceEEEecCceEEEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      +|++.++||+|+||+||++.. .+++.||+|.+.                        |+++......+..++..++|||
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence            478889999999999999976 468999999763                        3334444445667788999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++|+|.+++..... ..+++..+..++.|++.||+|||+.   +++||||||+||++++++.++|+|||+++......
T Consensus        81 ~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~  156 (285)
T cd05605          81 LMNGGDLKFHIYNMGN-PGFDEERAVFYAAEITCGLEDLHRE---RIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGE  156 (285)
T ss_pred             ccCCCcHHHHHHhcCc-CCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHEEECCCCCEEEeeCCCceecCCCC
Confidence            9999999887754322 2589999999999999999999998   99999999999999999999999999998654322


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      . .....|+..|+|||++.+..++.++|||||||++|||++|+.||.....    ......+...+... ....+.   .
T Consensus       157 ~-~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~----~~~~~~~~~~~~~~-~~~~~~---~  227 (285)
T cd05605         157 T-IRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKE----KVKREEVERRVKED-QEEYSE---K  227 (285)
T ss_pred             c-cccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCch----hhHHHHHHHHhhhc-ccccCc---c
Confidence            2 2234689999999999888899999999999999999999999873210    00000111111111 111111   1


Q ss_pred             HHHHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          359 DIILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                      ....+.+++.+||+.||++||     ++++++++
T Consensus       228 ~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05605         228 FSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAH  261 (285)
T ss_pred             cCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhcC
Confidence            223478899999999999999     88888765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-37  Score=292.30  Aligned_cols=239  Identities=24%  Similarity=0.272  Sum_probs=185.1

Q ss_pred             HhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------------------cCCccccc
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------------------HHSETEDS  183 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------------------~~~~~~~~  183 (412)
                      ...++|++...||+|.||.|-+|+. .+++.||||.+                                   +|+|+++.
T Consensus        94 k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~L  173 (576)
T KOG0585|consen   94 KQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKL  173 (576)
T ss_pred             eehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEE
Confidence            3457899999999999999999976 57999999954                                   46666666


Q ss_pred             eEEEec--CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC
Q 042435          184 AFVVYS--PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL  261 (412)
Q Consensus       184 ~~~~~~--~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~  261 (412)
                      ..+..+  .+.+|||+|||..|.+...=.   ....++..+..+++.++..||+|||.+   +|+||||||+|+|+++++
T Consensus       174 iEvLDDP~s~~~YlVley~s~G~v~w~p~---d~~els~~~Ar~ylrDvv~GLEYLH~Q---giiHRDIKPsNLLl~~~g  247 (576)
T KOG0585|consen  174 IEVLDDPESDKLYLVLEYCSKGEVKWCPP---DKPELSEQQARKYLRDVVLGLEYLHYQ---GIIHRDIKPSNLLLSSDG  247 (576)
T ss_pred             EEeecCcccCceEEEEEeccCCccccCCC---CcccccHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEEcCCC
Confidence            666544  467899999999887753322   222389999999999999999999999   999999999999999999


Q ss_pred             cEEEeecCCccccCCCC-----CCcccccccccccccccccCcc----cCcccccHHHHHHHHHHHhCCCCccccccccc
Q 042435          262 EAFVADFGTVRLLDVDS-----SNRTLQAGTYGYIALELVYTMV----VTEKCVIYSFGVVALEVLMGTHPGELLLSLSS  332 (412)
Q Consensus       262 ~~kl~DfGla~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~----~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~  332 (412)
                      ++||+|||.+.......     .......||+.|+|||.+.++.    .+.+.||||+||+||.|+.|+.||-..     
T Consensus       248 ~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~-----  322 (576)
T KOG0585|consen  248 TVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDD-----  322 (576)
T ss_pred             cEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccc-----
Confidence            99999999987653221     1123468999999999987632    356899999999999999999998632     


Q ss_pred             CCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          333 SSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                        ........++...+..+...   +....+.+|+.++|.+||++|.+..+|..+.--....
T Consensus       323 --~~~~l~~KIvn~pL~fP~~p---e~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt~~g  379 (576)
T KOG0585|consen  323 --FELELFDKIVNDPLEFPENP---EINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVTRDG  379 (576)
T ss_pred             --hHHHHHHHHhcCcccCCCcc---cccHHHHHHHHHHhhcChhheeehhhheecceeccCC
Confidence              11122334444444443322   2233488999999999999999999999887555443

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=4.5e-37  Score=289.12  Aligned_cols=236  Identities=22%  Similarity=0.287  Sum_probs=180.3

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC------CCcEEEEEec----------------------cCCccccceEEEecCce
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKL----------------------HHSETEDSAFVVYSPQC  192 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~  192 (412)
                      .+++|.+.+.||+|+||.||+|.+.      .+..||+|.+                      +|+++......+.+.+.
T Consensus         4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (277)
T cd05036           4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLP   83 (277)
T ss_pred             CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence            3567899999999999999999774      3578899965                      34455555566777788


Q ss_pred             EEEEEEeccCCceeeeeccCcc----cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC---cEEE
Q 042435          193 MFFIYEYMERGSLFCVLRDDDE----AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL---EAFV  265 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~---~~kl  265 (412)
                      .++||||+++|+|.+++.....    ...++|.+++.++.|++.||+|||+.   +++||||||+||+++.++   .+||
T Consensus        84 ~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~nil~~~~~~~~~~kl  160 (277)
T cd05036          84 RFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEEN---HFIHRDIAARNCLLTCKGPGRVAKI  160 (277)
T ss_pred             cEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchheEEEeccCCCcceEe
Confidence            8999999999999998865431    12589999999999999999999998   999999999999998654   6999


Q ss_pred             eecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhH
Q 042435          266 ADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLID  342 (412)
Q Consensus       266 ~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~  342 (412)
                      +|||+++........  ......+..|+|||++.+..++.++|||||||++|||++ |..||...       . .....+
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~-------~-~~~~~~  232 (277)
T cd05036         161 ADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGR-------T-NQEVME  232 (277)
T ss_pred             ccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCC-------C-HHHHHH
Confidence            999999866322211  112233568999999998899999999999999999997 99998632       1 111222


Q ss_pred             HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      .+........+..   ....+.+++.+||+.+|++|||+.+|+++|+.
T Consensus       233 ~~~~~~~~~~~~~---~~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~~  277 (277)
T cd05036         233 FVTGGGRLDPPKG---CPGPVYRIMTDCWQHTPEDRPNFATILERIQY  277 (277)
T ss_pred             HHHcCCcCCCCCC---CCHHHHHHHHHHcCCCcccCcCHHHHHHHhhC
Confidence            2222222111111   12347889999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=2.2e-37  Score=297.65  Aligned_cols=216  Identities=25%  Similarity=0.339  Sum_probs=170.1

Q ss_pred             eeeeecCceEEEEEEeC-CCcEEEEEec-------------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAELP-DGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++||+|+||.||+|+.. +++.||+|.+                         +|+++......+...+..++||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            36999999999999774 6889999964                         466666666677888899999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|..++....   .++......++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..........
T Consensus        81 ~~L~~~l~~~~---~~~~~~~~~~~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~  154 (321)
T cd05603          81 GELFFHLQRER---CFLEPRARFYAAEVASAIGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTS  154 (321)
T ss_pred             CCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCccc
Confidence            99988776433   478888889999999999999998   999999999999999999999999999875433223334


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  ..   ....
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~-------~~~~~~~~i~~~~~~~~--~~---~~~~  222 (321)
T cd05603         155 TFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSR-------DVSQMYDNILHKPLQLP--GG---KTVA  222 (321)
T ss_pred             cccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCC-------CHHHHHHHHhcCCCCCC--CC---CCHH
Confidence            457899999999999888999999999999999999999998632       11111122222211111  11   1224


Q ss_pred             HHHHHHhcCcCCCCCCCCHH
Q 042435          363 VSTIALACLRSKPKSRPTMQ  382 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs~~  382 (412)
                      +.+++.+|++.||++||++.
T Consensus       223 ~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         223 ACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             HHHHHHHHccCCHhhcCCCC
Confidence            77899999999999999754

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=2e-37  Score=303.60  Aligned_cols=236  Identities=22%  Similarity=0.285  Sum_probs=180.9

Q ss_pred             HHHHhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCc
Q 042435          137 NLIDATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQ  191 (412)
Q Consensus       137 ~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~  191 (412)
                      ++....++|++.+.||+|+||.||++... +++.+|+|.+                        +|+++......+..++
T Consensus        37 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~  116 (370)
T cd05621          37 KLQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDK  116 (370)
T ss_pred             hcCCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC
Confidence            34445678999999999999999999875 5889999965                        3566666667778889


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                      ..++||||+++|+|.+++...    .++......++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||++
T Consensus       117 ~~~lv~Ey~~gg~L~~~l~~~----~~~~~~~~~~~~qil~aL~~LH~~---~IvHrDLKp~NILl~~~~~~kL~DFG~a  189 (370)
T cd05621         117 YLYMVMEYMPGGDLVNLMSNY----DVPEKWAKFYTAEVVLALDAIHSM---GLIHRDVKPDNMLLDKHGHLKLADFGTC  189 (370)
T ss_pred             EEEEEEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEEecccc
Confidence            999999999999999988654    378888999999999999999998   9999999999999999999999999999


Q ss_pred             cccCCCCC-CcccccccccccccccccCc----ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhh
Q 042435          272 RLLDVDSS-NRTLQAGTYGYIALELVYTM----VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ  346 (412)
Q Consensus       272 ~~~~~~~~-~~~~~~gt~~y~aPE~~~~~----~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~  346 (412)
                      +....... ......||+.|+|||++.+.    .++.++||||+||++|||++|+.||....       .......+...
T Consensus       190 ~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~-------~~~~~~~i~~~  262 (370)
T cd05621         190 MKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADS-------LVGTYSKIMDH  262 (370)
T ss_pred             eecccCCceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCC-------HHHHHHHHHhC
Confidence            87643322 22345799999999998654    37889999999999999999999997321       11122223222


Q ss_pred             ccCCccchhhHHHHHHHHHHHHhcCcCCCC--CCCCHHHHHHH
Q 042435          347 RLSPPINQKIIQDIILVSTIALACLRSKPK--SRPTMQRISQE  387 (412)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~--~RPs~~evl~~  387 (412)
                      ......+.. ......+.+++.+|+..+|.  .||++.|++++
T Consensus       263 ~~~~~~p~~-~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~h  304 (370)
T cd05621         263 KNSLNFPED-VEISKHAKNLICAFLTDREVRLGRNGVEEIKQH  304 (370)
T ss_pred             CcccCCCCc-ccCCHHHHHHHHHHccCchhccCCCCHHHHhcC
Confidence            111111111 11122367788888875554  38899999987

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=1.7e-37  Score=299.00  Aligned_cols=217  Identities=26%  Similarity=0.329  Sum_probs=172.0

Q ss_pred             eeeeecCceEEEEEEe-CCCcEEEEEec-------------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAEL-PDGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      +.||+|+||+||+|.. .+|+.+|+|.+                         +|+++......+...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            3699999999999976 46899999954                         356666666677788899999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|..++....   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++..........
T Consensus        81 ~~L~~~l~~~~---~~~~~~~~~~~~qi~~al~~lH~~---givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~  154 (325)
T cd05604          81 GELFFHLQRER---SFPEPRARFYAAEIASALGYLHSI---NIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTT  154 (325)
T ss_pred             CCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCCcc
Confidence            99988776543   588999999999999999999998   999999999999999999999999999875433333334


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+........  ..   ....
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~-------~~~~~~~~~~~~~~~~~--~~---~~~~  222 (325)
T cd05604         155 TFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCR-------DVAEMYDNILHKPLVLR--PG---ASLT  222 (325)
T ss_pred             cccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCC-------CHHHHHHHHHcCCccCC--CC---CCHH
Confidence            557999999999999999999999999999999999999998632       11111122222221111  11   1223


Q ss_pred             HHHHHHhcCcCCCCCCCCHHH
Q 042435          363 VSTIALACLRSKPKSRPTMQR  383 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs~~e  383 (412)
                      +.+++.+|++.||.+||++.+
T Consensus       223 ~~~ll~~ll~~~p~~R~~~~~  243 (325)
T cd05604         223 AWSILEELLEKDRQRRLGAKE  243 (325)
T ss_pred             HHHHHHHHhccCHHhcCCCCC
Confidence            678999999999999998763

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=5.8e-37  Score=296.34  Aligned_cols=177  Identities=25%  Similarity=0.292  Sum_probs=153.3

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .++|++.+.||+|+||.||++... +++.+|+|.+                      +|+++......+...+..++|||
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEe
Confidence            367999999999999999999775 6888999853                      46677777777888999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++|+|.+++....   .+++.....++.|++.||+|||+.+  +++||||||+||+++.++.+||+|||++...... 
T Consensus        84 ~~~~~~L~~~l~~~~---~~~~~~~~~~~~~l~~~l~~lH~~~--~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~-  157 (333)
T cd06650          84 HMDGGSLDQVLKKAG---RIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-  157 (333)
T ss_pred             cCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChhhEEEcCCCCEEEeeCCcchhhhhh-
Confidence            999999999987543   4788899999999999999999742  7999999999999999999999999998755322 


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcc
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGE  325 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~  325 (412)
                       ......|+..|+|||++.+..++.++|||||||++|||++|+.||.
T Consensus       158 -~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~  203 (333)
T cd06650         158 -MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIP  203 (333)
T ss_pred             -ccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence             1223468999999999998889999999999999999999999986

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.4e-37  Score=270.45  Aligned_cols=228  Identities=27%  Similarity=0.338  Sum_probs=190.4

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      .++|++++.||+|.||.||.|+. +++-.||+|++                        +|+|+.+....+.+....||+
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLi  100 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLI  100 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEE
Confidence            46799999999999999999976 46889999964                        678888888889999999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      +||.++|+|+..|++.... .++......++.|+|.||.|+|..   +++||||||+|+|++.++..|++|||.+-... 
T Consensus       101 lEya~~gel~k~L~~~~~~-~f~e~~~a~Yi~q~A~Al~y~h~k---~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p-  175 (281)
T KOG0580|consen  101 LEYAPRGELYKDLQEGRMK-RFDEQRAATYIKQLANALLYCHLK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAP-  175 (281)
T ss_pred             EEecCCchHHHHHHhcccc-cccccchhHHHHHHHHHHHHhccC---CcccCCCCHHHhccCCCCCeeccCCCceeecC-
Confidence            9999999999999865432 477788888999999999999988   99999999999999999999999999986533 


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                       ...+...+||..|.+||+..+...+.+.|+|++|++.||++.|..||...       .......++..-....+  ...
T Consensus       176 -~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~-------~~~etYkrI~k~~~~~p--~~i  245 (281)
T KOG0580|consen  176 -SNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQ-------SHSETYKRIRKVDLKFP--STI  245 (281)
T ss_pred             -CCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhh-------hhHHHHHHHHHccccCC--ccc
Confidence             44566789999999999999999999999999999999999999999832       22222333333333322  222


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .   ..+.+++.+|+..+|.+|.+..|++++
T Consensus       246 s---~~a~dlI~~ll~~~p~~r~~l~~v~~h  273 (281)
T KOG0580|consen  246 S---GGAADLISRLLVKNPIERLALTEVMDH  273 (281)
T ss_pred             C---hhHHHHHHHHhccCccccccHHHHhhh
Confidence            2   237889999999999999999999876

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=7e-37  Score=290.91  Aligned_cols=239  Identities=26%  Similarity=0.359  Sum_probs=180.7

Q ss_pred             cCcccceeeeecCceEEEEEEeCC-Cc--EEEEEecc-----------------------CCccccceEEEecCceEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPD-GK--VVALKKLH-----------------------HSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~-~~--~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ++|++.+.||+|+||.||+|...+ +.  .+++|.++                       |+++......+...+..+++
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv   81 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA   81 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence            578889999999999999997743 33  46777553                       45555555566677789999


Q ss_pred             EEeccCCceeeeeccCc-------------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcE
Q 042435          197 YEYMERGSLFCVLRDDD-------------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEA  263 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~  263 (412)
                      +||+++|+|.++++...             ....+++..+..++.|++.||+|||++   +++||||||+||++++++.+
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~  158 (297)
T cd05089          82 IEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEK---QFIHRDLAARNVLVGENLAS  158 (297)
T ss_pred             EEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCcCCcceEEECCCCeE
Confidence            99999999999886532             112488999999999999999999998   99999999999999999999


Q ss_pred             EEeecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhH
Q 042435          264 FVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLID  342 (412)
Q Consensus       264 kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~  342 (412)
                      ||+|||++....... .......+..|+|||+..+..++.++|||||||++|||++ |..||....       . ....+
T Consensus       159 kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~-------~-~~~~~  229 (297)
T cd05089         159 KIADFGLSRGEEVYV-KKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMT-------C-AELYE  229 (297)
T ss_pred             EECCcCCCcccccee-ccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC-------H-HHHHH
Confidence            999999986432111 1111233567999999988889999999999999999998 999986321       1 11112


Q ss_pred             HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCC
Q 042435          343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKK  396 (412)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  396 (412)
                      ..........+..   ....+.+++.+||+.+|.+||+++++++.|+.+....+
T Consensus       230 ~~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~~  280 (297)
T cd05089         230 KLPQGYRMEKPRN---CDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEARK  280 (297)
T ss_pred             HHhcCCCCCCCCC---CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhc
Confidence            2222222211111   12347899999999999999999999999988776544

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=9.3e-37  Score=284.11  Aligned_cols=232  Identities=25%  Similarity=0.400  Sum_probs=179.4

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEeccC--------------------CccccceEEEecCceEEEEEEeccC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHH--------------------SETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~--------------------~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++|++.+.||+|+||.||+|...++..+|+|.++.                    +++......+ .....+++|||+++
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~-~~~~~~lv~e~~~~   84 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVV-SEEPIYIVTEYMSK   84 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCCCCHHHHHHHHHHHHhcCCCceEEEEeEE-CCCCcEEEEEecCC
Confidence            46888899999999999999988888999997753                    2322222223 45568999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC-c
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-R  281 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~-~  281 (412)
                      ++|.+++..... ..+++.++..++.|++.||+|||+.   +++||||||+||++++++.++|+|||++......... .
T Consensus        85 ~~L~~~~~~~~~-~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~  160 (260)
T cd05070          85 GSLLDFLKDGEG-RALKLPNLVDMAAQVAAGMAYIERM---NYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTAR  160 (260)
T ss_pred             CcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEEeCCceEEeCCceeeeeccCcccccc
Confidence            999998875432 2489999999999999999999998   9999999999999999999999999999765433211 1


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ....++..|+|||...+..++.++||||||+++|||++ |..||...       . .....+.+......+.+.   ...
T Consensus       161 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~-------~-~~~~~~~~~~~~~~~~~~---~~~  229 (260)
T cd05070         161 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM-------N-NREVLEQVERGYRMPCPQ---DCP  229 (260)
T ss_pred             cCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCC-------C-HHHHHHHHHcCCCCCCCC---cCC
Confidence            22235678999999988889999999999999999999 88888632       1 111222222222222211   222


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      ..+.+++.+||..+|++|||+.++.+.|++
T Consensus       230 ~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         230 ISLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             HHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence            348899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=5.5e-37  Score=289.23  Aligned_cols=233  Identities=23%  Similarity=0.305  Sum_probs=178.3

Q ss_pred             CcccceeeeecCceEEEEEEeC------CCcEEEEEecc----------------------CCccccceEEEecCceEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP------DGKVVALKKLH----------------------HSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~l  195 (412)
                      +|++.+.||+|+||.||+|...      +++.||+|+++                      |+++......+...+..++
T Consensus         6 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~   85 (283)
T cd05091           6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSM   85 (283)
T ss_pred             HHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEE
Confidence            4677788999999999999763      35789999764                      4555555566777788999


Q ss_pred             EEEeccCCceeeeeccCc-------------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCc
Q 042435          196 IYEYMERGSLFCVLRDDD-------------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLE  262 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~  262 (412)
                      ++||+++++|.+++....             ....+++..+..++.|++.||+|||++   +++||||||+||++++++.
T Consensus        86 ~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~---gi~H~dlkp~Nil~~~~~~  162 (283)
T cd05091          86 IFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSH---HVVHKDLATRNVLVFDKLN  162 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHc---CccccccchhheEecCCCc
Confidence            999999999988874221             122488899999999999999999998   9999999999999999999


Q ss_pred             EEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcch
Q 042435          263 AFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIM  339 (412)
Q Consensus       263 ~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~  339 (412)
                      +||+|||+++........  .....+++.|+|||.+.+..++.++||||||+++|||++ |..||...       ... .
T Consensus       163 ~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~-------~~~-~  234 (283)
T cd05091         163 VKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGY-------SNQ-D  234 (283)
T ss_pred             eEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCC-------CHH-H
Confidence            999999998865432211  123345778999999988889999999999999999998 88887621       111 1


Q ss_pred             hhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          340 LIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      ..+.+......+.+..   ....+.+++.+||+.+|++||++.+|++.|+.
T Consensus       235 ~~~~i~~~~~~~~~~~---~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~  282 (283)
T cd05091         235 VIEMIRNRQVLPCPDD---CPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT  282 (283)
T ss_pred             HHHHHHcCCcCCCCCC---CCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence            2222222211111122   22337899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=7.3e-37  Score=285.69  Aligned_cols=239  Identities=20%  Similarity=0.237  Sum_probs=185.4

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||+|.. .+++.+|||.+                        +|+++......+..++..+++|
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            4688889999999999999976 57899999954                        3455555555567778899999


Q ss_pred             EeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          198 EYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      ||+++++|.+++.... ....+++.++..++.|++.||+|||+.   +++|+||||+||+++.++.++++|||++.....
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~  158 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSS  158 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEECcchhhhcccc
Confidence            9999999998886422 123589999999999999999999998   999999999999999999999999999886644


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .........|+..|+|||.+.+..++.++|+||||+++|||++|..||....      .........+.....++...  
T Consensus       159 ~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~--  230 (267)
T cd08229         159 KTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK------MNLYSLCKKIEQCDYPPLPS--  230 (267)
T ss_pred             CCcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCccccc------chHHHHhhhhhcCCCCCCCc--
Confidence            3333334568899999999988889999999999999999999999986221      00001111111111111111  


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ......+.+++.+||+.||++|||+.+|++.++++.
T Consensus       231 ~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~~  266 (267)
T cd08229         231 DHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRMH  266 (267)
T ss_pred             ccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhhc
Confidence            112234889999999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=9.6e-37  Score=282.59  Aligned_cols=226  Identities=22%  Similarity=0.325  Sum_probs=176.2

Q ss_pred             eeeeecCceEEEEEEe-CCCcEEEEEec----------------------cCCccccceEEEecCceEEEEEEeccCCce
Q 042435          149 YCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEYMERGSL  205 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~gsL  205 (412)
                      +.||+|+||.||+|.. .+++.+|+|..                      +|+++......+......++||||+++++|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            3689999999999977 47899999953                      466666667778888899999999999999


Q ss_pred             eeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCc--cc
Q 042435          206 FCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR--TL  283 (412)
Q Consensus       206 ~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~--~~  283 (412)
                      .+++....  ..+++.+++.++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++.........  ..
T Consensus        81 ~~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  155 (252)
T cd05084          81 LTFLRTEG--PRLKVKELIQMVENAAAGMEYLESK---HCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGM  155 (252)
T ss_pred             HHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEEcCCCcEEECccccCcccccccccccCCC
Confidence            99886543  2488999999999999999999998   99999999999999999999999999987543221111  11


Q ss_pred             ccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          284 QAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       284 ~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...+..|+|||.+.+..++.++||||||+++|||++ |..||....        .......+......+.+.   .....
T Consensus       156 ~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~--------~~~~~~~~~~~~~~~~~~---~~~~~  224 (252)
T cd05084         156 KQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLS--------NQQTREAIEQGVRLPCPE---LCPDA  224 (252)
T ss_pred             CCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccC--------HHHHHHHHHcCCCCCCcc---cCCHH
Confidence            123457999999988889999999999999999998 888886321        111222222222222111   11234


Q ss_pred             HHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          363 VSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      +.+++.+||+.+|++|||+.|+.+.|+.
T Consensus       225 ~~~li~~~l~~~p~~Rps~~~~~~~l~~  252 (252)
T cd05084         225 VYRLMERCWEYDPGQRPSFSTVHQELQS  252 (252)
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHhC
Confidence            8889999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=1.3e-36  Score=283.81  Aligned_cols=233  Identities=24%  Similarity=0.356  Sum_probs=179.5

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEeccC--------------------CccccceEEEecCceEEEEEEeccC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHH--------------------SETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~--------------------~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++|++.++||+|+||.||+|...++..||+|.++.                    +++...... ...+..++||||+++
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~-~~~~~~~lv~e~~~~   84 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAV-VSEEPIYIVTEYMSK   84 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCccCHHHHHHHHHHHHhCCCCCcceEEEE-ECCCCcEEEEEcCCC
Confidence            56899999999999999999887777899997753                    333333332 345567999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCc-
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR-  281 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~-  281 (412)
                      |+|.+++..... ..+++..+..++.|++.||+|||+.   +++||||||+||++++++.++|+|||.++......... 
T Consensus        85 ~~L~~~~~~~~~-~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~  160 (262)
T cd05071          85 GSLLDFLKGEMG-KYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR  160 (262)
T ss_pred             CcHHHHHhhccc-cCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcccEEEcCCCcEEeccCCceeeccccccccc
Confidence            999999875422 2579999999999999999999998   99999999999999999999999999998654332211 


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ....++..|+|||+..+..++.++||||||+++|||+| |..||....       .. ...+........+..   ....
T Consensus       161 ~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~-------~~-~~~~~~~~~~~~~~~---~~~~  229 (262)
T cd05071         161 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV-------NR-EVLDQVERGYRMPCP---PECP  229 (262)
T ss_pred             cCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC-------hH-HHHHHHhcCCCCCCc---cccC
Confidence            23346678999999988889999999999999999999 888876321       11 111111111111111   1223


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      ..+.+++.+||+.||++||++.++++.|++.
T Consensus       230 ~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~  260 (262)
T cd05071         230 ESLHDLMCQCWRKEPEERPTFEYLQAFLEDY  260 (262)
T ss_pred             HHHHHHHHHHccCCcccCCCHHHHHHHHHHh
Confidence            3478999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=5e-37  Score=289.02  Aligned_cols=227  Identities=22%  Similarity=0.276  Sum_probs=171.7

Q ss_pred             eeecCceEEEEEEeC-CCcEEEEEecc------------------------CCccccceEEEecCceEEEEEEeccCCce
Q 042435          151 IGTGGYDSVYKAELP-DGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIYEYMERGSL  205 (412)
Q Consensus       151 lG~G~~g~Vy~~~~~-~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~ey~~~gsL  205 (412)
                      ||+|+||.||++..+ +|+.+|+|.+.                        |+++......+..+...++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            699999999999764 68999999653                        44444445556778889999999999999


Q ss_pred             eeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCccccc
Q 042435          206 FCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA  285 (412)
Q Consensus       206 ~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~  285 (412)
                      .+++..... ..+++..+..++.|++.||+|||+.   +++||||||+||+++.++.++|+|||++....... ......
T Consensus        81 ~~~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~-~~~~~~  155 (277)
T cd05607          81 KYHIYNVGE-RGLEMERVIHYSAQITCGILHLHSM---DIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGK-TITQRA  155 (277)
T ss_pred             HHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHHHC---CEEEccCChHhEEEcCCCCEEEeeceeeeecCCCc-eeeccC
Confidence            887754332 2488999999999999999999998   99999999999999999999999999987654322 223346


Q ss_pred             ccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHH
Q 042435          286 GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVST  365 (412)
Q Consensus       286 gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (412)
                      |+..|+|||++.+..++.++|||||||++|||++|+.||....       ......++...................+.+
T Consensus       156 ~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (277)
T cd05607         156 GTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHK-------EKVAKEELKRRTLEDEVKFEHQNFTEESKD  228 (277)
T ss_pred             CCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCc-------chhhHHHHHHHhhccccccccccCCHHHHH
Confidence            8999999999998889999999999999999999999986321       000111111111111100000112234789


Q ss_pred             HHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          366 IALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       366 l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                      ++.+||+.||++||++.|+++.+.
T Consensus       229 li~~~L~~~P~~R~~~~~~~~~~~  252 (277)
T cd05607         229 ICRLFLAKKPEDRLGSREKNDDPR  252 (277)
T ss_pred             HHHHHhccCHhhCCCCccchhhhh
Confidence            999999999999999977664443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-37  Score=299.75  Aligned_cols=220  Identities=23%  Similarity=0.320  Sum_probs=169.4

Q ss_pred             eeecCceEEEEEEeC-CCcEEEEEecc---------------------------CCccccceEEEecCceEEEEEEeccC
Q 042435          151 IGTGGYDSVYKAELP-DGKVVALKKLH---------------------------HSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       151 lG~G~~g~Vy~~~~~-~~~~vAvK~l~---------------------------~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ||+|+||+||+|+.. +++.||+|.+.                           |+++......+...+..++||||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            699999999999764 68999999753                           44444455566778889999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|.+++....   .+++..+..++.|+++||+|||++   +|+||||||+|||++.++.+||+|||+++..........
T Consensus        81 g~L~~~l~~~~---~~~~~~~~~~~~qil~al~~LH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~  154 (330)
T cd05586          81 GELFWHLQKEG---RFSEDRAKFYIAELVLALEHLHKY---DIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTN  154 (330)
T ss_pred             ChHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCCcc
Confidence            99988886543   588999999999999999999998   999999999999999999999999999876433333334


Q ss_pred             cccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHH
Q 042435          283 LQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDII  361 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (412)
                      ...||+.|+|||++.+. .++.++|||||||++|||+||+.||...       ........+.......+. ..   ...
T Consensus       155 ~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~-------~~~~~~~~i~~~~~~~~~-~~---~~~  223 (330)
T cd05586         155 TFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAE-------DTQQMYRNIAFGKVRFPK-NV---LSD  223 (330)
T ss_pred             CccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCC-------CHHHHHHHHHcCCCCCCC-cc---CCH
Confidence            45799999999998754 4789999999999999999999998632       111111122211111111 11   122


Q ss_pred             HHHHHHHhcCcCCCCCCC----CHHHHHHH
Q 042435          362 LVSTIALACLRSKPKSRP----TMQRISQE  387 (412)
Q Consensus       362 ~~~~l~~~Cl~~dP~~RP----s~~evl~~  387 (412)
                      .+.+++.+||+.||++||    ++.|++++
T Consensus       224 ~~~~li~~~L~~~P~~R~~~~~~~~~ll~h  253 (330)
T cd05586         224 EGRQFVKGLLNRNPQHRLGAHRDAVELKEH  253 (330)
T ss_pred             HHHHHHHHHcCCCHHHCCCCCCCHHHHhcC
Confidence            367899999999999998    56666653

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=1.9e-37  Score=297.83  Aligned_cols=217  Identities=24%  Similarity=0.304  Sum_probs=173.3

Q ss_pred             eeeeecCceEEEEEEe----CCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEEecc
Q 042435          149 YCIGTGGYDSVYKAEL----PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~----~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      +.||+|+||.||++..    .+|+.||+|.+                       +|+++......+..++..++||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            5799999999999965    36889999964                       46777777777888899999999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCc
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR  281 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~  281 (412)
                      +|+|.+++....   .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.........
T Consensus        82 ~~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~  155 (318)
T cd05582          82 GGDLFTRLSKEV---MFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKA  155 (318)
T ss_pred             CCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCce
Confidence            999998886543   589999999999999999999998   99999999999999999999999999998654433333


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDII  361 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (412)
                      ....||+.|+|||.+.+..++.++|||||||++|||++|+.||...       ........+.......  +...   ..
T Consensus       156 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~-------~~~~~~~~i~~~~~~~--p~~~---~~  223 (318)
T cd05582         156 YSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGK-------DRKETMTMILKAKLGM--PQFL---SP  223 (318)
T ss_pred             ecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCC-------CHHHHHHHHHcCCCCC--CCCC---CH
Confidence            4457899999999998888999999999999999999999998732       1111112222221111  1111   22


Q ss_pred             HHHHHHHhcCcCCCCCCCCHHH
Q 042435          362 LVSTIALACLRSKPKSRPTMQR  383 (412)
Q Consensus       362 ~~~~l~~~Cl~~dP~~RPs~~e  383 (412)
                      .+.+++.+||+.||++||++.+
T Consensus       224 ~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         224 EAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             HHHHHHHHHhhcCHhHcCCCCC
Confidence            3778999999999999999544

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=8e-37  Score=301.58  Aligned_cols=239  Identities=19%  Similarity=0.275  Sum_probs=184.2

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeC------CCcEEEEEecc-----------------------CCccccceEEEecC
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKLH-----------------------HSETEDSAFVVYSP  190 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~  190 (412)
                      -..++|.+.+.||+|+||.||+|.+.      .++.||+|+++                       |+++......+...
T Consensus        34 ~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~~  113 (401)
T cd05107          34 MPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKG  113 (401)
T ss_pred             ecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEccC
Confidence            34456888899999999999999863      34689999763                       55666666667778


Q ss_pred             ceEEEEEEeccCCceeeeeccCcc--------------------------------------------------------
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDE--------------------------------------------------------  214 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~--------------------------------------------------------  214 (412)
                      ...++||||+++|+|.++++....                                                        
T Consensus       114 ~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (401)
T cd05107         114 GPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQ  193 (401)
T ss_pred             CCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchh
Confidence            889999999999999988864311                                                        


Q ss_pred             ---------------------------------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCE
Q 042435          215 ---------------------------------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNI  255 (412)
Q Consensus       215 ---------------------------------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NI  255 (412)
                                                             ...++|.....++.|++.||+|||+.   +++||||||+||
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrdlkp~Ni  270 (401)
T cd05107         194 DMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASK---NCVHRDLAARNV  270 (401)
T ss_pred             cchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcC---CcCcccCCcceE
Confidence                                                   12367888999999999999999988   999999999999


Q ss_pred             EecCCCcEEEeecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCccccccccc
Q 042435          256 LLNSNLEAFVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSS  332 (412)
Q Consensus       256 Ll~~~~~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~  332 (412)
                      |+++++.+||+|||+++.......  ......++..|+|||.+.+..++.++|||||||++|||++ |..||...     
T Consensus       271 Ll~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~-----  345 (401)
T cd05107         271 LICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPEL-----  345 (401)
T ss_pred             EEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCC-----
Confidence            999999999999999986532221  1223356788999999988889999999999999999998 88897632     


Q ss_pred             CCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          333 SSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                        .........+......+.+..   ....+.+++.+||..+|.+||+++|+++.|+++
T Consensus       346 --~~~~~~~~~~~~~~~~~~p~~---~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~  399 (401)
T cd05107         346 --PMNEQFYNAIKRGYRMAKPAH---ASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDL  399 (401)
T ss_pred             --CchHHHHHHHHcCCCCCCCCC---CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence              111112222222222221111   123488999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=1.1e-36  Score=290.56  Aligned_cols=239  Identities=22%  Similarity=0.326  Sum_probs=183.4

Q ss_pred             hcCcccceeeeecCceEEEEEEe--------CCCcEEEEEec-----------------------cCCccccceEEEecC
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL--------PDGKVVALKKL-----------------------HHSETEDSAFVVYSP  190 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~--------~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~  190 (412)
                      .++|++.+.||+|+||.||+|..        .++..||+|.+                       +|+++......+...
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   93 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   93 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence            45688889999999999999964        13457999965                       355666666667778


Q ss_pred             ceEEEEEEeccCCceeeeeccCcc-------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDE-------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL  257 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl  257 (412)
                      ...++||||+++|+|.+++.....             ...++|.++..++.|++.||+|||++   +++||||||+||++
T Consensus        94 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---givH~dlkp~Nili  170 (304)
T cd05101          94 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQ---KCIHRDLAARNVLV  170 (304)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHC---CeeecccccceEEE
Confidence            889999999999999998865321             12478999999999999999999998   99999999999999


Q ss_pred             cCCCcEEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCC
Q 042435          258 NSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSS  334 (412)
Q Consensus       258 ~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~  334 (412)
                      ++++.+||+|||+++........  .....+++.|+|||++.+..++.++||||||+++||+++ |..||...       
T Consensus       171 ~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~-------  243 (304)
T cd05101         171 TENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI-------  243 (304)
T ss_pred             cCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccC-------
Confidence            99999999999999866432221  122345678999999988889999999999999999998 77887521       


Q ss_pred             CCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          335 GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                       ....+.+.+........+.   .....+.+++.+||+.+|++|||+.|+++.|+++...
T Consensus       244 -~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~  299 (304)
T cd05101         244 -PVEELFKLLKEGHRMDKPA---NCTNELYMMMRDCWHAIPSHRPTFKQLVEDLDRILTL  299 (304)
T ss_pred             -CHHHHHHHHHcCCcCCCCC---CCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHHHHh
Confidence             1111122222211111111   1223478899999999999999999999999887643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=8.8e-37  Score=287.39  Aligned_cols=238  Identities=19%  Similarity=0.270  Sum_probs=184.8

Q ss_pred             hcCcccceeeeecCceEEEEEEeCC-----CcEEEEEec----------------------cCCccccceEEEec-CceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPD-----GKVVALKKL----------------------HHSETEDSAFVVYS-PQCM  193 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~-----~~~vAvK~l----------------------~~~~~~~~~~~~~~-~~~~  193 (412)
                      .++|++.+.||+|+||.||+|...+     +..||+|.+                      +|+++......+.. +...
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~   84 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPP   84 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCC
Confidence            4678889999999999999998765     788999965                      45666665555544 5778


Q ss_pred             EEEEEeccCCceeeeeccCccc-----ccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeec
Q 042435          194 FFIYEYMERGSLFCVLRDDDEA-----IELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADF  268 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~-----~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~Df  268 (412)
                      ++++||+++|+|.+++......     ..+++.++..++.|++.||+|||+.   +++||||||+||++++++.+||+||
T Consensus        85 ~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kl~d~  161 (280)
T cd05043          85 FVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKR---GVIHKDIAARNCVIDEELQVKITDN  161 (280)
T ss_pred             EEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCHhhEEEcCCCcEEECCC
Confidence            9999999999999988654321     3589999999999999999999998   9999999999999999999999999


Q ss_pred             CCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhh
Q 042435          269 GTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILY  345 (412)
Q Consensus       269 Gla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~  345 (412)
                      |+++.+......  .....++..|+|||++.+..++.++||||||+++||+++ |+.||....        ...+...+.
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--------~~~~~~~~~  233 (280)
T cd05043         162 ALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEID--------PFEMAAYLK  233 (280)
T ss_pred             CCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCC--------HHHHHHHHH
Confidence            999865433211  122345678999999988889999999999999999999 999986321        111222222


Q ss_pred             hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      ..........   ....+.+++.+||+.||++|||+.|+++.|+.+..
T Consensus       234 ~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~  278 (280)
T cd05043         234 DGYRLAQPIN---CPDELFAVMACCWALDPEERPSFSQLVQCLTDFHA  278 (280)
T ss_pred             cCCCCCCCCc---CCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            2222111111   12347899999999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.4e-36  Score=284.39  Aligned_cols=233  Identities=23%  Similarity=0.364  Sum_probs=175.6

Q ss_pred             cccceeeeecCceEEEEEEeCC----CcEEEEEecc-----------------------CCccccceEEEecCc------
Q 042435          145 FHIRYCIGTGGYDSVYKAELPD----GKVVALKKLH-----------------------HSETEDSAFVVYSPQ------  191 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~~----~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~------  191 (412)
                      |++.+.||+|+||.||+|....    +..||+|+++                       |+++......+...+      
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            5677899999999999997642    4689999764                       333333333343333      


Q ss_pred             eEEEEEEeccCCceeeeeccCc---ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeec
Q 042435          192 CMFFIYEYMERGSLFCVLRDDD---EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADF  268 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~Df  268 (412)
                      ..++++||+++|+|..++....   ....+++.....++.|++.||+|||+.   +++||||||+||++++++.+||+||
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~df  157 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNR---NFIHRDLAARNCMLREDMTVCVADF  157 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchheEEECCCCeEEECCc
Confidence            3799999999999988875432   223589999999999999999999998   9999999999999999999999999


Q ss_pred             CCccccCCCCCCc--ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhh
Q 042435          269 GTVRLLDVDSSNR--TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILY  345 (412)
Q Consensus       269 Gla~~~~~~~~~~--~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~  345 (412)
                      |+++.........  ....++..|+|||.+.+..++.++||||||+++|||++ |..||....       . ....+.+.
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~-------~-~~~~~~~~  229 (273)
T cd05035         158 GLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVE-------N-HEIYDYLR  229 (273)
T ss_pred             cceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCC-------H-HHHHHHHH
Confidence            9998654332211  12235678999999988889999999999999999999 888876321       1 11222222


Q ss_pred             hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      .......+.   .....+.+++.+||+.||++|||+.|+++.|+++
T Consensus       230 ~~~~~~~~~---~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         230 HGNRLKQPE---DCLDELYDLMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             cCCCCCCCc---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            211111111   1233488999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=1.3e-36  Score=282.87  Aligned_cols=223  Identities=21%  Similarity=0.295  Sum_probs=172.6

Q ss_pred             eeeecCceEEEEEEe---CCCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEEeccCC
Q 042435          150 CIGTGGYDSVYKAEL---PDGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYEYMERG  203 (412)
Q Consensus       150 ~lG~G~~g~Vy~~~~---~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~ey~~~g  203 (412)
                      .||+|+||.||+|.+   .+++.+|+|.++                       |+++......+ ..+..++||||+++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGIC-EAESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEE-cCCCcEEEEecCCCC
Confidence            589999999999965   357899999764                       33443333333 456779999999999


Q ss_pred             ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC---
Q 042435          204 SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN---  280 (412)
Q Consensus       204 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~---  280 (412)
                      +|.+++....   .+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|||+++........   
T Consensus        81 ~L~~~l~~~~---~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~  154 (257)
T cd05116          81 PLNKFLQKNK---HVTEKNITELVHQVSMGMKYLEET---NFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKA  154 (257)
T ss_pred             cHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeee
Confidence            9999886543   588999999999999999999998   9999999999999999999999999999866443221   


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      .....++..|+|||.+....++.++||||||+++|||++ |+.||...        ......+.+.....++.+...   
T Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~--------~~~~~~~~i~~~~~~~~~~~~---  223 (257)
T cd05116         155 KTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGM--------KGNEVTQMIESGERMECPQRC---  223 (257)
T ss_pred             cCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC--------CHHHHHHHHHCCCCCCCCCCC---
Confidence            122234578999999988889999999999999999998 99998732        111223333332222222222   


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      ...+.+++.+||+.||++||++.+|.+.|+.
T Consensus       224 ~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~  254 (257)
T cd05116         224 PPEMYDLMKLCWTYGVDERPGFAVVELRLRN  254 (257)
T ss_pred             CHHHHHHHHHHhccCchhCcCHHHHHHHHhc
Confidence            2347899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=1.1e-36  Score=288.53  Aligned_cols=235  Identities=24%  Similarity=0.363  Sum_probs=182.0

Q ss_pred             CcccceeeeecCceEEEEEEeC------CCcEEEEEec----------------------cCCccccceEEEecCceEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP------DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      +|++.+.||+|+||.||+|...      ....+|+|.+                      +|+++......+...+..++
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLL   80 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEE
Confidence            4778899999999999999752      2357888854                      35666666666777888999


Q ss_pred             EEEeccCCceeeeeccCc---------------------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCC
Q 042435          196 IYEYMERGSLFCVLRDDD---------------------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNN  254 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~---------------------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~N  254 (412)
                      ++||+++|+|.+++....                     ....+++.+++.++.|++.||+|||+.   +++||||||+|
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~ivH~dikp~n  157 (290)
T cd05045          81 IVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEM---KLVHRDLAARN  157 (290)
T ss_pred             EEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHC---Ceehhhhhhhe
Confidence            999999999998875421                     113588999999999999999999988   99999999999


Q ss_pred             EEecCCCcEEEeecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccc
Q 042435          255 ILLNSNLEAFVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLS  331 (412)
Q Consensus       255 ILl~~~~~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~  331 (412)
                      |++++++.+||+|||+++.......  ......++..|+|||...+..++.++||||||+++|||+| |..||...    
T Consensus       158 ill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~----  233 (290)
T cd05045         158 VLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGI----  233 (290)
T ss_pred             EEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCC----
Confidence            9999999999999999976533221  1122345678999999988889999999999999999999 99998622    


Q ss_pred             cCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          332 SSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                          ....+.+........+.+...   ...+.+++.+||+.+|++||++.|+++.|+++.
T Consensus       234 ----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~  287 (290)
T cd05045         234 ----APERLFNLLKTGYRMERPENC---SEEMYNLMLTCWKQEPDKRPTFADISKELEKMM  287 (290)
T ss_pred             ----CHHHHHHHHhCCCCCCCCCCC---CHHHHHHHHHHccCCcccCCCHHHHHHHHHHHH
Confidence                111222333332222222211   234788999999999999999999999998864

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=1.5e-36  Score=282.16  Aligned_cols=230  Identities=22%  Similarity=0.313  Sum_probs=177.3

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEecc-------------------CCccccceEEE-ecCceEEEEEEeccC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLH-------------------HSETEDSAFVV-YSPQCMFFIYEYMER  202 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~-------------------~~~~~~~~~~~-~~~~~~~lv~ey~~~  202 (412)
                      ++|++.+.||+|+||.||++... |..||+|.++                   |+++......+ ...+..++++||+++
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~   84 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAK   84 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCCchHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCCC
Confidence            46888899999999999999874 7889999664                   34444444333 345678999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|.++++.... ..+++..++.++.|++.||+|||++   +++||||||+||++++++.+|++|||+++......   .
T Consensus        85 ~~L~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~---~  157 (256)
T cd05082          85 GSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEAN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ---D  157 (256)
T ss_pred             CcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CEeccccchheEEEcCCCcEEecCCccceeccccC---C
Confidence            999998876432 2488999999999999999999998   99999999999999999999999999987543222   2


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDII  361 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (412)
                      ...++..|+|||+..+..++.++||||||+++|||++ |+.||....        .......+..........   ....
T Consensus       158 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~---~~~~  226 (256)
T cd05082         158 TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP--------LKDVVPRVEKGYKMDAPD---GCPP  226 (256)
T ss_pred             CCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCC--------HHHHHHHHhcCCCCCCCC---CCCH
Confidence            2344678999999988889999999999999999998 999976211        111111122221111111   1223


Q ss_pred             HHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          362 LVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       362 ~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      .+.+++.+||+.+|++|||+.++++.|+++
T Consensus       227 ~~~~li~~~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         227 VVYDVMKQCWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             HHHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence            478899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=9.2e-37  Score=291.48  Aligned_cols=237  Identities=22%  Similarity=0.314  Sum_probs=181.7

Q ss_pred             cCcccceeeeecCceEEEEEEeC--------CCcEEEEEecc-----------------------CCccccceEEEecCc
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP--------DGKVVALKKLH-----------------------HSETEDSAFVVYSPQ  191 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~--------~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~  191 (412)
                      ++|.+.+.||+|+||.||++...        ++..+|+|.++                       |+++......+...+
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~   97 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG   97 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCC
Confidence            56899999999999999999752        23579999764                       344444455567778


Q ss_pred             eEEEEEEeccCCceeeeeccCcc-------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDE-------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN  258 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~  258 (412)
                      ..++||||+++|+|.+++.....             ...++|.+++.++.|++.||+|||+.   +++||||||+||+++
T Consensus        98 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp~Nill~  174 (307)
T cd05098          98 PLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVT  174 (307)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHHheEEc
Confidence            89999999999999999875421             12489999999999999999999998   999999999999999


Q ss_pred             CCCcEEEeecCCccccCCCCCCc--ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCC
Q 042435          259 SNLEAFVADFGTVRLLDVDSSNR--TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSG  335 (412)
Q Consensus       259 ~~~~~kl~DfGla~~~~~~~~~~--~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~  335 (412)
                      .++.+||+|||+++.........  ....++..|+|||++.+..++.++|||||||++|||++ |..||...        
T Consensus       175 ~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~--------  246 (307)
T cd05098         175 EDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV--------  246 (307)
T ss_pred             CCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcC--------
Confidence            99999999999987653321111  12234568999999988889999999999999999998 88887521        


Q ss_pred             CcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          336 PKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      +...+.+.+......+.+..   ....+.+++.+||+.+|++|||+.|+++.|+++.+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~  301 (307)
T cd05098         247 PVEELFKLLKEGHRMDKPSN---CTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILA  301 (307)
T ss_pred             CHHHHHHHHHcCCCCCCCCc---CCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHH
Confidence            11112222222222111111   22347889999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=1.4e-36  Score=284.58  Aligned_cols=233  Identities=24%  Similarity=0.331  Sum_probs=173.8

Q ss_pred             cccceeeeecCceEEEEEEeCC-Cc--EEEEEec-----------------------cCCccccceEEEec------Cce
Q 042435          145 FHIRYCIGTGGYDSVYKAELPD-GK--VVALKKL-----------------------HHSETEDSAFVVYS------PQC  192 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~~-~~--~vAvK~l-----------------------~~~~~~~~~~~~~~------~~~  192 (412)
                      |.+.+.||+|+||.||+|.+.+ ++  .+|+|.+                       +|+++......+..      ...
T Consensus         1 ~~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   80 (272)
T cd05075           1 LALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPS   80 (272)
T ss_pred             CccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCC
Confidence            3567889999999999998754 33  5899864                       35555555444432      235


Q ss_pred             EEEEEEeccCCceeeeeccCc---ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          193 MFFIYEYMERGSLFCVLRDDD---EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      .++++||+++|+|.+++....   ....+++.....++.|++.||+|||++   +|+||||||+||++++++.+||+|||
T Consensus        81 ~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg  157 (272)
T cd05075          81 PVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSK---SFIHRDLAARNCMLNENMNVCVADFG  157 (272)
T ss_pred             cEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhheEEcCCCCEEECCCC
Confidence            689999999999988764221   123489999999999999999999998   99999999999999999999999999


Q ss_pred             CccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhh
Q 042435          270 TVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQ  346 (412)
Q Consensus       270 la~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~  346 (412)
                      +++........  .....+++.|+|||...+..++.++||||||+++|||++ |+.||....        .....+.+..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~--------~~~~~~~~~~  229 (272)
T cd05075         158 LSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVE--------NSEIYDYLRQ  229 (272)
T ss_pred             cccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCC--------HHHHHHHHHc
Confidence            99876433221  122345678999999998899999999999999999999 788886311        1111222222


Q ss_pred             ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      ....+....   ....+.+++.+||+.||++|||+.++++.|+++
T Consensus       230 ~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         230 GNRLKQPPD---CLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             CCCCCCCCC---CCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            111111111   122378999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=4.1e-37  Score=287.52  Aligned_cols=232  Identities=26%  Similarity=0.333  Sum_probs=178.6

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEecc---------------------CCccccceEEEecCceEEEEEEec
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH---------------------HSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~---------------------~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      ++|++.+.||+|+||.||+|.. .+++.||+|.++                     |+++......+...+..++|+||+
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~   88 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFC   88 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEecc
Confidence            4688888999999999999976 468999999653                     455555556677788999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++++|.+++....   .+++.+...++.|++.||+|||+.   +++|+||||+||+++.++.++|+|||++.........
T Consensus        89 ~~~~L~~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~  162 (267)
T cd06645          89 GGGSLQDIYHVTG---PLSESQIAYVSRETLQGLYYLHSK---GKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAK  162 (267)
T ss_pred             CCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECcceeeeEccCcccc
Confidence            9999999886543   588999999999999999999998   9999999999999999999999999998765443333


Q ss_pred             ccccccccccccccccc---CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          281 RTLQAGTYGYIALELVY---TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~---~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                      .....|+..|+|||++.   ...++.++|||||||++|||++|+.||....       +.............++......
T Consensus       163 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  235 (267)
T cd06645         163 RKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLH-------PMRALFLMTKSNFQPPKLKDKM  235 (267)
T ss_pred             cccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCccccc-------chhhHHhhhccCCCCCcccccC
Confidence            34457899999999874   4568889999999999999999999975321       1111111111111111111111


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .....+.+++.+||+.+|++||++++++++
T Consensus       236 ~~~~~~~~li~~~l~~~P~~R~~~~~ll~~  265 (267)
T cd06645         236 KWSNSFHHFVKMALTKNPKKRPTAEKLLQH  265 (267)
T ss_pred             CCCHHHHHHHHHHccCCchhCcCHHHHhcC
Confidence            112247789999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=2e-36  Score=281.96  Aligned_cols=232  Identities=24%  Similarity=0.383  Sum_probs=179.0

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEecc--------------------CCccccceEEEecCceEEEEEEeccC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLH--------------------HSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~--------------------~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++|.+...||+|+||.||+|...++..+|+|.+.                    |+++...... ...+..+++|||+++
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~-~~~~~~~~v~e~~~~   84 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAV-VSEEPIYIVTEFMGK   84 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCccHHHHHHHHHHHHhCCCCCeeeEEEE-EcCCCcEEEEEcCCC
Confidence            4588889999999999999998777789999754                    3333333332 345668999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC-Cc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS-NR  281 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~-~~  281 (412)
                      |+|.++++.... ..++|..+..++.|++.||+|||+.   +++|+||||+||++++++.++|+|||+++....... ..
T Consensus        85 ~~L~~~~~~~~~-~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~  160 (260)
T cd05069          85 GSLLDFLKEGDG-KYLKLPQLVDMAAQIADGMAYIERM---NYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTAR  160 (260)
T ss_pred             CCHHHHHhhCCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCeEEECCCccceEccCCccccc
Confidence            999999875432 2489999999999999999999998   999999999999999999999999999976543321 11


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ....++..|+|||...+..++.++||||||+++|||+| |+.||....       .. ...+........+.+.   ...
T Consensus       161 ~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~-------~~-~~~~~~~~~~~~~~~~---~~~  229 (260)
T cd05069         161 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMV-------NR-EVLEQVERGYRMPCPQ---GCP  229 (260)
T ss_pred             CCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCC-------HH-HHHHHHHcCCCCCCCc---ccC
Confidence            22345678999999988889999999999999999999 899986321       11 1112222222222111   123


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      ..+.+++.+||+.||++||+++++.+.|++
T Consensus       230 ~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         230 ESLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             HHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence            348899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.6e-36  Score=282.58  Aligned_cols=229  Identities=21%  Similarity=0.283  Sum_probs=180.3

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec--------------------------cCCccccceEEEecCceEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL--------------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l--------------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ++|++.+.||+|++|.||+|.. .+++.+|+|.+                          +|+++......+...+..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            5799999999999999999976 46899999964                          35555555666778889999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      |+||+++++|.+++....   .+++.....++.|++.||+|||+.   +++||||+|+||++++++.++|+|||+++...
T Consensus        82 v~e~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~  155 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYG---ALTETVTRKYTRQILEGVEYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRLQ  155 (263)
T ss_pred             EEEECCCCcHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecc
Confidence            999999999998886543   478899999999999999999998   99999999999999999999999999987654


Q ss_pred             CCCCCc---ccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          276 VDSSNR---TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       276 ~~~~~~---~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ......   ....++..|+|||.+.+..++.++||||||+++||+++|+.||....       .................
T Consensus       156 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-------~~~~~~~~~~~~~~~~~  228 (263)
T cd06625         156 TICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFE-------AMAAIFKIATQPTNPQL  228 (263)
T ss_pred             ccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccc-------hHHHHHHHhccCCCCCC
Confidence            322111   23457889999999998889999999999999999999999986321       11111111111111111


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      +..   ....+.+++.+||..+|++|||+.|++++
T Consensus       229 ~~~---~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         229 PSH---VSPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             Ccc---CCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence            111   12247889999999999999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=6.7e-37  Score=300.09  Aligned_cols=239  Identities=21%  Similarity=0.273  Sum_probs=182.2

Q ss_pred             HHHHHHhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEec
Q 042435          135 YENLIDATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYS  189 (412)
Q Consensus       135 ~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~  189 (412)
                      +.++....++|++.+.||+|+||.||++... +++.+|+|.+                        +|+++......+..
T Consensus        35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~  114 (371)
T cd05622          35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  114 (371)
T ss_pred             HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc
Confidence            3455566789999999999999999999775 6889999964                        36666667777788


Q ss_pred             CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      .+..++||||+++|+|.+++...    .++...+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||
T Consensus       115 ~~~~~lv~Ey~~gg~L~~~~~~~----~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NIll~~~~~ikL~DfG  187 (371)
T cd05622         115 DRYLYMVMEYMPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFG  187 (371)
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHEEECCCCCEEEEeCC
Confidence            88999999999999999988654    378888889999999999999998   99999999999999999999999999


Q ss_pred             CccccCCCCC-CcccccccccccccccccCc----ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHh
Q 042435          270 TVRLLDVDSS-NRTLQAGTYGYIALELVYTM----VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDIL  344 (412)
Q Consensus       270 la~~~~~~~~-~~~~~~gt~~y~aPE~~~~~----~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~  344 (412)
                      +++....... ......||+.|+|||++.+.    .++.++|||||||++|||++|+.||....       .......+.
T Consensus       188 ~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~-------~~~~~~~i~  260 (371)
T cd05622         188 TCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADS-------LVGTYSKIM  260 (371)
T ss_pred             ceeEcCcCCcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCC-------HHHHHHHHH
Confidence            9986643322 22345799999999998653    37889999999999999999999987321       111122222


Q ss_pred             hhccCCccchhhHHHHHHHHHHHHhcCcCCCCC--CCCHHHHHHHH
Q 042435          345 YQRLSPPINQKIIQDIILVSTIALACLRSKPKS--RPTMQRISQEL  388 (412)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~--RPs~~evl~~L  388 (412)
                      ........+. .......+.+++.+|+..++.+  ||+++|++++.
T Consensus       261 ~~~~~~~~~~-~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~  305 (371)
T cd05622         261 NHKNSLTFPD-DNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHL  305 (371)
T ss_pred             cCCCcccCCC-cCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcCc
Confidence            2111111111 0112233778889999844433  78999999874

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=1.7e-36  Score=283.56  Aligned_cols=234  Identities=28%  Similarity=0.384  Sum_probs=180.4

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CC---cEEEEEecc----------------------CCccccceEEEecCceEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DG---KVVALKKLH----------------------HSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~---~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~l  195 (412)
                      +++|+..+.||+|+||.||+|... ++   ..+|+|.++                      |+++......+...+..++
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMI   83 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEE
Confidence            357888899999999999999874 23   379999753                      4444445555677788999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||||+++++|.+++....  ..+++.++..++.|++.|++|||+.   +++||||||+||++++++.+|++|||++....
T Consensus        84 v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~  158 (268)
T cd05063          84 ITEYMENGALDKYLRDHD--GEFSSYQLVGMLRGIAAGMKYLSDM---NYVHRDLAARNILVNSNLECKVSDFGLSRVLE  158 (268)
T ss_pred             EEEcCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEEcCCCcEEECCCccceecc
Confidence            999999999999886543  2589999999999999999999998   99999999999999999999999999987654


Q ss_pred             CCCCCc---ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCc
Q 042435          276 VDSSNR---TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPP  351 (412)
Q Consensus       276 ~~~~~~---~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (412)
                      ......   .....+..|+|||++.+..++.++|||||||++||+++ |+.||...       .. ......+......+
T Consensus       159 ~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~-------~~-~~~~~~i~~~~~~~  230 (268)
T cd05063         159 DDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDM-------SN-HEVMKAINDGFRLP  230 (268)
T ss_pred             cccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcC-------CH-HHHHHHHhcCCCCC
Confidence            322211   11123457999999988889999999999999999998 99998632       11 11222222222221


Q ss_pred             cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      ...   .....+.+++.+||+.+|++||++.+|++.|+++
T Consensus       231 ~~~---~~~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         231 APM---DCPSAVYQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             CCC---CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            111   1223478999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=1.1e-36  Score=295.72  Aligned_cols=239  Identities=21%  Similarity=0.278  Sum_probs=178.1

Q ss_pred             hcCcccceeeeecCceEEEEEEe------CCCcEEEEEeccC-----------------------CccccceEEEe-cCc
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL------PDGKVVALKKLHH-----------------------SETEDSAFVVY-SPQ  191 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~------~~~~~vAvK~l~~-----------------------~~~~~~~~~~~-~~~  191 (412)
                      .++|++.+.||+|+||.||+|..      .+++.||||.++.                       +++......+. .+.
T Consensus         6 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~~   85 (343)
T cd05103           6 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG   85 (343)
T ss_pred             hhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCCC
Confidence            35789999999999999999963      3578999997642                       33333333333 345


Q ss_pred             eEEEEEEeccCCceeeeeccCcc---------------------------------------------------------
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDE---------------------------------------------------------  214 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~---------------------------------------------------------  214 (412)
                      ..+++|||+++|+|.++++....                                                         
T Consensus        86 ~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (343)
T cd05103          86 PLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEE  165 (343)
T ss_pred             ceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhh
Confidence            67899999999999988754210                                                         


Q ss_pred             -------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC--Cccccc
Q 042435          215 -------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS--NRTLQA  285 (412)
Q Consensus       215 -------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~--~~~~~~  285 (412)
                             ...++|.++..++.|+++||+|||++   +|+||||||+||+++.++++||+|||+++.......  ......
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  242 (343)
T cd05103         166 AEQEDLYKKVLTLEDLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDAR  242 (343)
T ss_pred             hhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCC
Confidence                   12378889999999999999999998   999999999999999999999999999876532221  112234


Q ss_pred             ccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHH
Q 042435          286 GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVS  364 (412)
Q Consensus       286 gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (412)
                      ++..|+|||.+.+..++.++||||||+++|||++ |..||....       ........+......+.+..   ....+.
T Consensus       243 ~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~~  312 (343)
T cd05103         243 LPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK-------IDEEFCRRLKEGTRMRAPDY---TTPEMY  312 (343)
T ss_pred             CCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCcc-------ccHHHHHHHhccCCCCCCCC---CCHHHH
Confidence            5678999999988889999999999999999997 899976321       11112222222221111111   112478


Q ss_pred             HHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          365 TIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       365 ~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      +++.+||+.||++|||+.|++++|+.+..
T Consensus       313 ~~~~~cl~~~p~~Rps~~eil~~l~~~~~  341 (343)
T cd05103         313 QTMLDCWHGEPSQRPTFSELVEHLGNLLQ  341 (343)
T ss_pred             HHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            89999999999999999999999987643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.6e-37  Score=301.48  Aligned_cols=228  Identities=21%  Similarity=0.292  Sum_probs=176.0

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||++.. .+++.||||.+                        +|+++......+.+.+..|+||
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            4788999999999999999976 57899999964                        4666777777788889999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++....   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        81 E~~~gg~L~~~l~~~~---~~~~~~~~~~~~ql~~aL~~LH~~---givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~  154 (377)
T cd05629          81 EFLPGGDLMTMLIKYD---TFSEDVTRFYMAECVLAIEAVHKL---GFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQ  154 (377)
T ss_pred             eCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEEeecccccccccc
Confidence            9999999999887543   478888999999999999999998   9999999999999999999999999998632110


Q ss_pred             CC-----------------------------------------------CcccccccccccccccccCcccCcccccHHH
Q 042435          278 SS-----------------------------------------------NRTLQAGTYGYIALELVYTMVVTEKCVIYSF  310 (412)
Q Consensus       278 ~~-----------------------------------------------~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~  310 (412)
                      ..                                               ......||+.|+|||++.+..++.++|||||
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSl  234 (377)
T cd05629         155 HDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSL  234 (377)
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEec
Confidence            00                                               0012468999999999998899999999999


Q ss_pred             HHHHHHHHhCCCCcccccccccCCCCcchhhHHhh--hccCCccchhhHHHHHHHHHHHHhcCcCCCCCC---CCHHHHH
Q 042435          311 GVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY--QRLSPPINQKIIQDIILVSTIALACLRSKPKSR---PTMQRIS  385 (412)
Q Consensus       311 Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~R---Ps~~evl  385 (412)
                      ||++|||+||+.||....       .......+..  ..+..+...   .....+.+++.+|+. +|.+|   |++.|++
T Consensus       235 Gvil~elltG~~Pf~~~~-------~~~~~~~i~~~~~~~~~p~~~---~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l  303 (377)
T cd05629         235 GAIMFECLIGWPPFCSEN-------SHETYRKIINWRETLYFPDDI---HLSVEAEDLIRRLIT-NAENRLGRGGAHEIK  303 (377)
T ss_pred             chhhhhhhcCCCCCCCCC-------HHHHHHHHHccCCccCCCCCC---CCCHHHHHHHHHHhc-CHhhcCCCCCHHHHh
Confidence            999999999999986321       1111111211  111111100   112237788899997 77765   5999988


Q ss_pred             HH
Q 042435          386 QE  387 (412)
Q Consensus       386 ~~  387 (412)
                      ++
T Consensus       304 ~h  305 (377)
T cd05629         304 SH  305 (377)
T ss_pred             cC
Confidence            86

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.4e-36  Score=285.37  Aligned_cols=235  Identities=22%  Similarity=0.291  Sum_probs=181.2

Q ss_pred             hcCcccceeeeecCceEEEEEEeC------CCcEEEEEecc----------------------CCccccceEEEecCceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKLH----------------------HSETEDSAFVVYSPQCM  193 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~  193 (412)
                      .++|++.+.||+|+||.||+|...      .+..||+|.+.                      |+++......+......
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   84 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPT   84 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCc
Confidence            357888999999999999999764      24689999753                      44555555567778889


Q ss_pred             EEEEEeccCCceeeeeccCcc-------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEe
Q 042435          194 FFIYEYMERGSLFCVLRDDDE-------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVA  266 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~-------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~  266 (412)
                      ++||||+++|+|.+++.....       ...++|..++.++.|++.||.|||+.   +++||||||+||+++.++.+||+
T Consensus        85 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~di~p~nill~~~~~~kl~  161 (277)
T cd05032          85 LVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAK---KFVHRDLAARNCMVAEDLTVKIG  161 (277)
T ss_pred             EEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccChheEEEcCCCCEEEC
Confidence            999999999999998865321       12478999999999999999999988   99999999999999999999999


Q ss_pred             ecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHH
Q 042435          267 DFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDI  343 (412)
Q Consensus       267 DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~  343 (412)
                      |||+++.......  ......++..|+|||.+.+..++.++|||||||++||++| |..||...       ... .....
T Consensus       162 dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~-------~~~-~~~~~  233 (277)
T cd05032         162 DFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGL-------SNE-EVLKF  233 (277)
T ss_pred             CcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccC-------CHH-HHHHH
Confidence            9999876543321  1223356788999999988889999999999999999998 88887521       111 11222


Q ss_pred             hhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          344 LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      .........+...   ...+.+++.+||+.+|++|||+.++++.|++
T Consensus       234 ~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  277 (277)
T cd05032         234 VIDGGHLDLPENC---PDKLLELMRMCWQYNPKMRPTFLEIVSSLKD  277 (277)
T ss_pred             HhcCCCCCCCCCC---CHHHHHHHHHHcCCChhhCCCHHHHHHHhcC
Confidence            2221111111111   3348899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.7e-36  Score=285.98  Aligned_cols=238  Identities=21%  Similarity=0.294  Sum_probs=176.4

Q ss_pred             cccceeeeecCceEEEEEEe-----CCCcEEEEEecc----------------------CCccccceEEEec--CceEEE
Q 042435          145 FHIRYCIGTGGYDSVYKAEL-----PDGKVVALKKLH----------------------HSETEDSAFVVYS--PQCMFF  195 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~-----~~~~~vAvK~l~----------------------~~~~~~~~~~~~~--~~~~~l  195 (412)
                      |+..+.||+|+||+||++.+     .+++.||+|.++                      |+++......+..  ....++
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL   85 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence            37789999999999988643     357899999764                      3333333333333  346899


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      +|||+++|+|.+++...    .+++.++..++.|++.||+|||++   +++||||||+||++++++.++|+|||+++...
T Consensus        86 v~e~~~~~~l~~~~~~~----~l~~~~~~~i~~~l~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~  158 (283)
T cd05080          86 IMEYVPLGSLRDYLPKH----KLNLAQLLLFAQQICEGMAYLHSQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVP  158 (283)
T ss_pred             EecCCCCCCHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHHHC---CeeccccChheEEEcCCCcEEEeecccccccC
Confidence            99999999999988654    389999999999999999999998   99999999999999999999999999998664


Q ss_pred             CCCCC---cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccccc-------ccCCCCcchhhHHhh
Q 042435          276 VDSSN---RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSL-------SSSSGPKIMLIDILY  345 (412)
Q Consensus       276 ~~~~~---~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~-------~~~~~~~~~~~~~~~  345 (412)
                      .....   .....++..|+|||...+..++.++||||||+++|||+||..|+......       ...........+...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (283)
T cd05080         159 EGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLE  238 (283)
T ss_pred             CcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhh
Confidence            32211   12234567799999998888999999999999999999999997632110       000000011111122


Q ss_pred             hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      .....+.+..   ....+.+++.+||+.||++|||++++++.|+++.
T Consensus       239 ~~~~~~~~~~---~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         239 RGMRLPCPKN---CPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             cCCCCCCCCC---CCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            2221111111   1234889999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=1.4e-36  Score=287.46  Aligned_cols=237  Identities=22%  Similarity=0.281  Sum_probs=180.9

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC------CCcEEEEEecc----------------------CCccccceEEEecCce
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKLH----------------------HSETEDSAFVVYSPQC  192 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~  192 (412)
                      .+++|++.+.||+|+||.||+|..+      .+..||+|.++                      |+++......+...+.
T Consensus         4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (288)
T cd05061           4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP   83 (288)
T ss_pred             cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            4578999999999999999999653      24589999653                      4455555556777888


Q ss_pred             EEEEEEeccCCceeeeeccCcc-------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEE
Q 042435          193 MFFIYEYMERGSLFCVLRDDDE-------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFV  265 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~-------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl  265 (412)
                      .++||||+++|+|.++++....       ....++..+..++.|++.||+|||++   +++||||||+||++++++.++|
T Consensus        84 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dikp~nili~~~~~~~L  160 (288)
T cd05061          84 TLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHDFTVKI  160 (288)
T ss_pred             cEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCCChheEEEcCCCcEEE
Confidence            9999999999999999864321       13457788899999999999999998   9999999999999999999999


Q ss_pred             eecCCccccCCCCCCc--ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhH
Q 042435          266 ADFGTVRLLDVDSSNR--TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLID  342 (412)
Q Consensus       266 ~DfGla~~~~~~~~~~--~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~  342 (412)
                      +|||+++.........  ....++..|+|||.+.+..++.++|||||||++|||++ |..||...       ... ...+
T Consensus       161 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~-------~~~-~~~~  232 (288)
T cd05061         161 GDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGL-------SNE-QVLK  232 (288)
T ss_pred             CcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCC-------CHH-HHHH
Confidence            9999988654322111  22245678999999998889999999999999999998 78887621       111 1111


Q ss_pred             HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      .+......+.+.   .....+.+++.+||+.||++|||+.|+++.|++.
T Consensus       233 ~~~~~~~~~~~~---~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~  278 (288)
T cd05061         233 FVMDGGYLDQPD---NCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDD  278 (288)
T ss_pred             HHHcCCCCCCCC---CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhh
Confidence            111111111111   1123488999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=3.9e-37  Score=302.48  Aligned_cols=228  Identities=21%  Similarity=0.273  Sum_probs=174.0

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||+|+. .+++.||+|.+                        +|+++......+..++..++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEE
Confidence            3689999999999999999976 46899999975                        3455666666678889999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++....   .++......++.|++.||+|||++   +|+||||||+|||++.++.+||+|||++..+...
T Consensus        81 E~~~~g~L~~~i~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~  154 (376)
T cd05598          81 DYIPGGDMMSLLIRLG---IFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWT  154 (376)
T ss_pred             eCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHEEECCCCCEEEEeCCCCcccccc
Confidence            9999999999987653   478888888999999999999998   9999999999999999999999999997532100


Q ss_pred             C-------------------------------------------CCcccccccccccccccccCcccCcccccHHHHHHH
Q 042435          278 S-------------------------------------------SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVA  314 (412)
Q Consensus       278 ~-------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil  314 (412)
                      .                                           .......||+.|+|||++.+..++.++|||||||++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil  234 (376)
T cd05598         155 HDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVIL  234 (376)
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeecccee
Confidence            0                                           001124699999999999999999999999999999


Q ss_pred             HHHHhCCCCcccccccccCCCCcchhhHHhhh--ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCC---CHHHHHHH
Q 042435          315 LEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ--RLSPPINQKIIQDIILVSTIALACLRSKPKSRP---TMQRISQE  387 (412)
Q Consensus       315 ~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP---s~~evl~~  387 (412)
                      |||++|+.||....       .......+...  ....+....   ....+.+++.+|+ .+|.+|+   ++.|++++
T Consensus       235 yell~G~~Pf~~~~-------~~~~~~~i~~~~~~~~~~~~~~---~s~~~~~li~~l~-~~p~~R~~~~t~~ell~h  301 (376)
T cd05598         235 YEMLVGQPPFLADT-------PAETQLKVINWETTLHIPSQAK---LSREASDLILRLC-CGAEDRLGKNGADEIKAH  301 (376)
T ss_pred             eehhhCCCCCCCCC-------HHHHHHHHhccCccccCCCCCC---CCHHHHHHHHHHh-cCHhhcCCCCCHHHHhCC
Confidence            99999999997321       11111111111  111111011   1123566777765 4999999   89999877

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.6e-36  Score=280.30  Aligned_cols=231  Identities=23%  Similarity=0.355  Sum_probs=181.5

Q ss_pred             hcCcccceeeeecCceEEEEEEeCCCcEEEEEecc--------------------CCccccceEEEecCceEEEEEEecc
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLH--------------------HSETEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~--------------------~~~~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      .++|++.+.||+|+||.||+|... |+.||+|.++                    |+++......+...+..++||||++
T Consensus         5 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~   83 (256)
T cd05039           5 SKELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMA   83 (256)
T ss_pred             hhhccceeeeecCCCceEEEEEec-CcEEEEEEeccchhHHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecC
Confidence            356888999999999999999874 7889999763                    4444445555667888999999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCc
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR  281 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~  281 (412)
                      +++|.+++..... ..+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||.++.......  
T Consensus        84 ~~~L~~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~--  157 (256)
T cd05039          84 KGSLVDYLRSRGR-AVITLAQQLGFALDVCEGMEYLEEK---NFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD--  157 (256)
T ss_pred             CCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CccchhcccceEEEeCCCCEEEcccccccccccccc--
Confidence            9999998875432 2489999999999999999999998   999999999999999999999999999986532221  


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                       ....+..|+|||++.+..++.++||||||+++||+++ |+.||...        ........+........+.   ...
T Consensus       158 -~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~--------~~~~~~~~~~~~~~~~~~~---~~~  225 (256)
T cd05039         158 -SGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI--------PLKDVVPHVEKGYRMEAPE---GCP  225 (256)
T ss_pred             -cCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCC--------CHHHHHHHHhcCCCCCCcc---CCC
Confidence             2334668999999988889999999999999999997 99998622        1111222222221111111   112


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      ..+.+++.+||..+|++|||++|+++.|+.+
T Consensus       226 ~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~~  256 (256)
T cd05039         226 PEVYKVMKDCWELDPAKRPTFKQLREQLALI  256 (256)
T ss_pred             HHHHHHHHHHhccChhhCcCHHHHHHHHhcC
Confidence            3478999999999999999999999999753

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=4.3e-37  Score=283.17  Aligned_cols=246  Identities=20%  Similarity=0.224  Sum_probs=181.7

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCc-cccceEEEecCc------
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSE-TEDSAFVVYSPQ------  191 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~-~~~~~~~~~~~~------  191 (412)
                      ..|+..++||+|+||+||+|+. .+|+.||+|+++                       |.+ ++....++.+.+      
T Consensus        11 ~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~   90 (323)
T KOG0594|consen   11 FDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIG   90 (323)
T ss_pred             HHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccc
Confidence            4466667899999999999966 578999999763                       445 555555666655      


Q ss_pred             eEEEEEEeccCCceeeeeccCccc-ccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCC
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEA-IELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGT  270 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~-~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGl  270 (412)
                      ..++|+||+.. +|..++...... ..++-..+..++.|+++||+|||++   +|+||||||.|||+++++.+||+|||+
T Consensus        91 ~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~---~IlHRDLKPQNlLi~~~G~lKlaDFGl  166 (323)
T KOG0594|consen   91 KLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSH---GILHRDLKPQNLLISSSGVLKLADFGL  166 (323)
T ss_pred             eEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCcceEEECCCCcEeeeccch
Confidence            78999999965 899888765421 2366688999999999999999999   999999999999999999999999999


Q ss_pred             ccccCCCCCCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccc-------------ccCCCC
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSL-------------SSSSGP  336 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~-------------~~~~~~  336 (412)
                      |+.........+...+|.+|.|||++.+. .|++..||||+|||+.||++++.-|......             ....++
T Consensus       167 Ara~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp  246 (323)
T KOG0594|consen  167 ARAFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWP  246 (323)
T ss_pred             HHHhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCC
Confidence            99776555556777899999999999876 6999999999999999999988777532110             001111


Q ss_pred             cchhhHHhhhccCCcc-chhhH----HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH--HhcCC
Q 042435          337 KIMLIDILYQRLSPPI-NQKII----QDIILVSTIALACLRSKPKSRPTMQRISQE--LEGKT  392 (412)
Q Consensus       337 ~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~--L~~~~  392 (412)
                      ................ +....    .......+++.+|++.+|.+|.|++.++.+  +.+..
T Consensus       247 ~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~~  309 (323)
T KOG0594|consen  247 GVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSELP  309 (323)
T ss_pred             CccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcChhhcccc
Confidence            1100000000000000 00111    111247889999999999999999999987  55543

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=2.8e-36  Score=279.02  Aligned_cols=224  Identities=22%  Similarity=0.325  Sum_probs=175.9

Q ss_pred             eeeecCceEEEEEEeCCCcEEEEEec----------------------cCCccccceEEEecCceEEEEEEeccCCceee
Q 042435          150 CIGTGGYDSVYKAELPDGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEYMERGSLFC  207 (412)
Q Consensus       150 ~lG~G~~g~Vy~~~~~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~gsL~~  207 (412)
                      +||+|+||.||+|...++..+|+|.+                      +|+++......+...+..++||||+++++|.+
T Consensus         2 ~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~   81 (250)
T cd05085           2 LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLS   81 (250)
T ss_pred             ccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHHH
Confidence            68999999999999888999999964                      35666666667778888999999999999999


Q ss_pred             eeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCc-ccccc
Q 042435          208 VLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR-TLQAG  286 (412)
Q Consensus       208 ~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~-~~~~g  286 (412)
                      ++.....  .+++..+..++.|++.||.|+|++   +++||||||+||+++.++.+|++|||++.......... ....+
T Consensus        82 ~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~  156 (250)
T cd05085          82 FLRKKKD--ELKTKQLVKFALDAAAGMAYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQI  156 (250)
T ss_pred             HHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeecccChheEEEcCCCeEEECCCccceeccccccccCCCCCC
Confidence            8865432  478999999999999999999988   99999999999999999999999999987543322111 12234


Q ss_pred             cccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHH
Q 042435          287 TYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVST  365 (412)
Q Consensus       287 t~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (412)
                      +..|+|||++.+..++.++||||||+++||+++ |..||....       . ......+........+..   ....+.+
T Consensus       157 ~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~-------~-~~~~~~~~~~~~~~~~~~---~~~~~~~  225 (250)
T cd05085         157 PIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMT-------N-QQAREQVEKGYRMSCPQK---CPDDVYK  225 (250)
T ss_pred             cccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCC-------H-HHHHHHHHcCCCCCCCCC---CCHHHHH
Confidence            678999999988889999999999999999998 999986321       1 111111212111111111   1234889


Q ss_pred             HHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          366 IALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       366 l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                      ++.+||+.+|++||++.|+++.|.
T Consensus       226 li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         226 VMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             HHHHHcccCcccCCCHHHHHHHhc
Confidence            999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=8.5e-37  Score=300.69  Aligned_cols=227  Identities=21%  Similarity=0.291  Sum_probs=172.7

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .|+..+.||+|+||.||+|.. .+++.||+|.+                        +|+++......+.+++..++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            588899999999999999976 46889999975                        35666666777888899999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++|+|.+++....   .++......++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++......
T Consensus        82 ~~~gg~L~~~l~~~~---~~~e~~~~~~~~qi~~al~~lH~~---~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~  155 (382)
T cd05625          82 YIPGGDMMSLLIRMG---IFPEDLARFYIAELTCAVESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTH  155 (382)
T ss_pred             CCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEeECCCCccccccc
Confidence            999999999886543   478888889999999999999998   99999999999999999999999999975321000


Q ss_pred             -----------------------------------------------CCcccccccccccccccccCcccCcccccHHHH
Q 042435          279 -----------------------------------------------SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFG  311 (412)
Q Consensus       279 -----------------------------------------------~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~G  311 (412)
                                                                     .......||+.|+|||++.+..++.++||||||
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG  235 (382)
T cd05625         156 DSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVG  235 (382)
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEech
Confidence                                                           001124689999999999998999999999999


Q ss_pred             HHHHHHHhCCCCcccccccccCCCCcchhhHHhh--hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCC---HHHHHH
Q 042435          312 VVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY--QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPT---MQRISQ  386 (412)
Q Consensus       312 vil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs---~~evl~  386 (412)
                      |++|||++|+.||....       +......+..  .....+.....   ...+.+++.+++ .+|++|++   +.|+++
T Consensus       236 vil~elltG~~Pf~~~~-------~~~~~~~i~~~~~~~~~p~~~~~---s~~~~~li~~l~-~~p~~R~~~~~~~ei~~  304 (382)
T cd05625         236 VILYEMLVGQPPFLAQT-------PLETQMKVINWQTSLHIPPQAKL---SPEASDLIIKLC-RGPEDRLGKNGADEIKA  304 (382)
T ss_pred             HHHHHHHhCCCCCCCCC-------HHHHHHHHHccCCCcCCCCcccC---CHHHHHHHHHHc-cCHhHcCCCCCHHHHhc
Confidence            99999999999997321       1111122221  11111111111   122556666654 49999987   888876


Q ss_pred             H
Q 042435          387 E  387 (412)
Q Consensus       387 ~  387 (412)
                      +
T Consensus       305 h  305 (382)
T cd05625         305 H  305 (382)
T ss_pred             C
Confidence            5

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=1.9e-36  Score=288.80  Aligned_cols=236  Identities=21%  Similarity=0.305  Sum_probs=183.5

Q ss_pred             hcCcccceeeeecCceEEEEEEe------CCCcEEEEEec-----------------------cCCccccceEEEecCce
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL------PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQC  192 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~------~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~  192 (412)
                      .++|++.+.||+|+||.||++..      ..+..||+|.+                       +|+++......+...+.
T Consensus        34 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  113 (302)
T cd05055          34 RNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGP  113 (302)
T ss_pred             HHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCc
Confidence            35789999999999999999964      23557999954                       35666666666777888


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .+++|||+++|+|.++++.... ..+++.++..++.|++.||+|||++   +++|+||||+||+++.+..++++|||+++
T Consensus       114 ~~lv~e~~~~~~L~~~i~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~dfg~~~  189 (302)
T cd05055         114 ILVITEYCCYGDLLNFLRRKRE-SFLTLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNVLLTHGKIVKICDFGLAR  189 (302)
T ss_pred             eEEEEEcCCCCcHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeehhhhccceEEEcCCCeEEECCCcccc
Confidence            9999999999999999875432 2389999999999999999999998   99999999999999999999999999998


Q ss_pred             ccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          273 LLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       273 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      .......  ......++..|+|||.+.+..++.++|||||||++|||++ |..||...       ...............
T Consensus       190 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~-------~~~~~~~~~~~~~~~  262 (302)
T cd05055         190 DIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGM-------PVDSKFYKLIKEGYR  262 (302)
T ss_pred             cccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCC-------CchHHHHHHHHcCCc
Confidence            6543321  1122345778999999998889999999999999999998 99998632       111112222222222


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      ...+..   ....+.+++.+||+.+|++|||+.|+++.|++.
T Consensus       263 ~~~~~~---~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         263 MAQPEH---APAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             CCCCCC---CCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence            111111   122488999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=9.8e-37  Score=294.62  Aligned_cols=233  Identities=22%  Similarity=0.281  Sum_probs=173.9

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc------------------------CCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||++..+ +++.+|+|.+.                        |+++......+.+.+..++||
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            47889999999999999999875 57889999763                        344444455677788999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.++++....  .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        81 ey~~~g~L~~~l~~~~~--~l~~~~~~~~~~qi~~al~~lH~~---~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~  155 (332)
T cd05623          81 DYYVGGDLLTLLSKFED--RLPEDMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSCLKLMED  155 (332)
T ss_pred             eccCCCcHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEeecchheecccC
Confidence            99999999999975322  488899999999999999999998   9999999999999999999999999998765333


Q ss_pred             CCC-ccccccccccccccccc-----CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCc
Q 042435          278 SSN-RTLQAGTYGYIALELVY-----TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP  351 (412)
Q Consensus       278 ~~~-~~~~~gt~~y~aPE~~~-----~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (412)
                      ... .....||+.|+|||++.     ...++.++|||||||++|||++|+.||....       .......+.......+
T Consensus       156 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~-------~~~~~~~i~~~~~~~~  228 (332)
T cd05623         156 GTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAES-------LVETYGKIMNHKERFQ  228 (332)
T ss_pred             CcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCC-------HHHHHHHHhCCCcccc
Confidence            222 23357999999999986     3457889999999999999999999987321       1111112221111111


Q ss_pred             cchhhHHHHHHHHHHHHhcCcCCC--CCCCCHHHHHHH
Q 042435          352 INQKIIQDIILVSTIALACLRSKP--KSRPTMQRISQE  387 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~dP--~~RPs~~evl~~  387 (412)
                      .+.........+.+++.+|+..+|  ..||++.|++++
T Consensus       229 ~p~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h  266 (332)
T cd05623         229 FPAQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQH  266 (332)
T ss_pred             CCCccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCC
Confidence            111111122346778888775544  347899999887

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=1.8e-36  Score=288.01  Aligned_cols=230  Identities=24%  Similarity=0.336  Sum_probs=180.6

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEe
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ..+|++.+.||+|+||.||+|.. .+++.||+|.+                     .|+++......+......++||||
T Consensus        19 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~   98 (296)
T cd06654          19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (296)
T ss_pred             ccceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecc
Confidence            35788889999999999999975 46889999965                     355555556667778899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++++|.+++...    .+++.++..++.|++.||+|||+.   +++||||||+||+++.++.++|+|||++........
T Consensus        99 ~~~~~L~~~~~~~----~~~~~~~~~i~~ql~~aL~~LH~~---gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~  171 (296)
T cd06654          99 LAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  171 (296)
T ss_pred             cCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEECccccchhcccccc
Confidence            9999999988643    378999999999999999999998   999999999999999999999999999876544333


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      ......+++.|+|||.+.+..++.++|||||||++|||++|+.||....       +........... .+.. ......
T Consensus       172 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~-------~~~~~~~~~~~~-~~~~-~~~~~~  242 (296)
T cd06654         172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNEN-------PLRALYLIATNG-TPEL-QNPEKL  242 (296)
T ss_pred             ccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCC-------HHHhHHHHhcCC-CCCC-CCcccc
Confidence            3334568899999999988889999999999999999999999986321       111111111111 1110 011112


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+.+++.+||..||++|||+.|++++
T Consensus       243 ~~~l~~li~~~l~~~p~~Rpt~~eil~~  270 (296)
T cd06654         243 SAIFRDFLNRCLDMDVEKRGSAKELLQH  270 (296)
T ss_pred             CHHHHHHHHHHCcCCcccCcCHHHHhhC
Confidence            2347889999999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-37  Score=270.08  Aligned_cols=242  Identities=23%  Similarity=0.343  Sum_probs=184.1

Q ss_pred             hcCcccceeeeecCceEEEEEE-eCCCcEEEEEeccCCccccce---------------------E-----EEecCceEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSA---------------------F-----VVYSPQCMF  194 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~-~~~~~~vAvK~l~~~~~~~~~---------------------~-----~~~~~~~~~  194 (412)
                      .++|.+.+.+|+|||+.||.++ ..+++.+|+|++..++.....                     .     ........|
T Consensus        20 ~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~y   99 (302)
T KOG2345|consen   20 NKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAY   99 (302)
T ss_pred             CceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEE
Confidence            4679999999999999999996 568999999987544422111                     0     012345689


Q ss_pred             EEEEeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          195 FIYEYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      |+++|...|+|.+.+.... ++..++..+.+.|+.++++||++||+. .+++.||||||.|||+.+++.+++.|||.+..
T Consensus       100 ll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~  178 (302)
T KOG2345|consen  100 LLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLGSATQ  178 (302)
T ss_pred             EEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEeccCccc
Confidence            9999999999999887653 334689999999999999999999998 45699999999999999999999999999876


Q ss_pred             cCCCCCC---------ccccccccccccccccc---CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhh
Q 042435          274 LDVDSSN---------RTLQAGTYGYIALELVY---TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLI  341 (412)
Q Consensus       274 ~~~~~~~---------~~~~~gt~~y~aPE~~~---~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~  341 (412)
                      .......         ......|..|+|||.+.   +...++++|||||||+||+|+.|..||+....-..+     ...
T Consensus       179 a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgS-----laL  253 (302)
T KOG2345|consen  179 APIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGS-----LAL  253 (302)
T ss_pred             cceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCe-----EEE
Confidence            5332111         13346789999999985   456789999999999999999999999854321111     111


Q ss_pred             HHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          342 DILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      .+....+..|....   ....+.+++..|++.||.+||++.+++..++...
T Consensus       254 Av~n~q~s~P~~~~---yse~l~~lik~mlqvdP~qRP~i~~ll~~~d~Li  301 (302)
T KOG2345|consen  254 AVQNAQISIPNSSR---YSEALHQLIKSMLQVDPNQRPTIPELLSKLDDLI  301 (302)
T ss_pred             eeeccccccCCCCC---ccHHHHHHHHHHhcCCcccCCCHHHHHHHHHhhc
Confidence            12222222222121   3334889999999999999999999999988753

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=1.7e-36  Score=317.14  Aligned_cols=239  Identities=25%  Similarity=0.339  Sum_probs=181.8

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.++||+|+||.||+|... +|+.||+|++                        +|+++......+..++..++||
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            57899999999999999999764 6899999975                        3566666667778888999999


Q ss_pred             EeccCCceeeeeccCc--------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          198 EYMERGSLFCVLRDDD--------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~--------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      ||+++|+|.+++....        ....+++..++.++.|+++||+|||+.   +|+||||||+||+++.++.++|+|||
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~---GIIHRDLKPeNILLd~dg~vKLiDFG  158 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSK---GVLHRDLKPDNILLGLFGEVVILDWG  158 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHC---CccccCCchheEEEcCCCCEEEEecC
Confidence            9999999998886421        112467788899999999999999998   99999999999999999999999999


Q ss_pred             CccccCCCC------------------CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccc
Q 042435          270 TVRLLDVDS------------------SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS  331 (412)
Q Consensus       270 la~~~~~~~------------------~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~  331 (412)
                      +++......                  .......||+.|+|||++.+..++.++|||||||++|||+||+.||.....  
T Consensus       159 LAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~--  236 (932)
T PRK13184        159 AAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKG--  236 (932)
T ss_pred             cceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcch--
Confidence            998652110                  011224689999999999999999999999999999999999999863210  


Q ss_pred             cCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCC-CHHHHHHHHhcCCC
Q 042435          332 SSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRP-TMQRISQELEGKTP  393 (412)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-s~~evl~~L~~~~~  393 (412)
                          ..........   .+............+.+++.+|++.||++|| +++++.+.|+....
T Consensus       237 ----~ki~~~~~i~---~P~~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~lq  292 (932)
T PRK13184        237 ----RKISYRDVIL---SPIEVAPYREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEPHLQ  292 (932)
T ss_pred             ----hhhhhhhhcc---ChhhccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence                0000000000   0000000011223477899999999999995 67778888876544

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=1.8e-36  Score=281.19  Aligned_cols=229  Identities=19%  Similarity=0.302  Sum_probs=179.9

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEEec
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      +|++.+.||+|+||.||++... +++.+|+|.+                      +|+++......+...+..+++|||+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYC   80 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeC
Confidence            4788899999999999999764 6889999964                      3555555566677888999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++|+|.+++..... ..++......++.|++.||.|||++   +++|+||||+||++++++.++++|||.++........
T Consensus        81 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~  156 (255)
T cd08219          81 DGGDLMQKIKLQRG-KLFPEDTILQWFVQMCLGVQHIHEK---RVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAY  156 (255)
T ss_pred             CCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEECCCCcEEEcccCcceeecccccc
Confidence            99999888764322 2478889999999999999999998   9999999999999999999999999999766443333


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      .....|+..|+|||++.+..++.++|+||||+++|+|++|+.||....       ............. .+.+..   ..
T Consensus       157 ~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~-------~~~~~~~~~~~~~-~~~~~~---~~  225 (255)
T cd08219         157 ACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANS-------WKNLILKVCQGSY-KPLPSH---YS  225 (255)
T ss_pred             cccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCC-------HHHHHHHHhcCCC-CCCCcc---cC
Confidence            334568899999999988889999999999999999999999987321       1111111111111 111111   12


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..+.+++.+||+.||++|||+.|++..
T Consensus       226 ~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         226 YELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             HHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence            347789999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=1.8e-36  Score=285.52  Aligned_cols=234  Identities=24%  Similarity=0.334  Sum_probs=179.9

Q ss_pred             cCcccceeeeecCceEEEEEEeC------CCcEEEEEec---------------------cCCccccceEEEecCceEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      .+|...++||+|+||.||++...      ++..+|+|.+                     +|+++......+...+..++
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   84 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLM   84 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEE
Confidence            35677889999999999999642      3568888854                     56666666677777888999


Q ss_pred             EEEeccCCceeeeeccCcc------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcE
Q 042435          196 IYEYMERGSLFCVLRDDDE------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEA  263 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~  263 (412)
                      +|||+++|+|.+++.....            ...+++.+++.++.|++.|++|||+.   +++||||||+||++++++.+
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~nil~~~~~~~  161 (280)
T cd05092          85 VFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASL---HFVHRDLATRNCLVGQGLVV  161 (280)
T ss_pred             EEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHC---CeecccccHhhEEEcCCCCE
Confidence            9999999999998865421            12488999999999999999999998   99999999999999999999


Q ss_pred             EEeecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchh
Q 042435          264 FVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIML  340 (412)
Q Consensus       264 kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~  340 (412)
                      ||+|||+++.......  ......+++.|+|||.+.+..++.++|||||||++|||++ |+.||....       . ...
T Consensus       162 kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~-------~-~~~  233 (280)
T cd05092         162 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLS-------N-TEA  233 (280)
T ss_pred             EECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCC-------H-HHH
Confidence            9999999875533221  1122345678999999998899999999999999999998 899986321       1 111


Q ss_pred             hHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          341 IDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      .+..........+..   ....+.+++.+||+.||.+||++.||.+.|++
T Consensus       234 ~~~~~~~~~~~~~~~---~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~~  280 (280)
T cd05092         234 IECITQGRELERPRT---CPPEVYAIMQGCWQREPQQRMVIKDIHSRLQA  280 (280)
T ss_pred             HHHHHcCccCCCCCC---CCHHHHHHHHHHccCChhhCCCHHHHHHHHhC
Confidence            122222111111111   12337899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-37  Score=297.30  Aligned_cols=241  Identities=22%  Similarity=0.281  Sum_probs=188.9

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec----------------------cCCccccceEEEecCceEEEEEEec
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      +...+.++||+|.||.|..+....+..||||.+                      +|+|+.+..++|..++.+++|+|||
T Consensus       538 s~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYm  617 (807)
T KOG1094|consen  538 SRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYM  617 (807)
T ss_pred             hheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHH
Confidence            445667899999999999999988899999954                      7899999999999999999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++|+|.+++..+... .+.-..-.+|+.|||.|++||.+.   ++||||+.++|||+|+++++||+|||+++.+-.....
T Consensus       618 EnGDLnqFl~aheap-t~~t~~~vsi~tqiasgmaYLes~---nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy  693 (807)
T KOG1094|consen  618 ENGDLNQFLSAHELP-TAETAPGVSICTQIASGMAYLESL---NFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYY  693 (807)
T ss_pred             hcCcHHHHHHhccCc-ccccchhHHHHHHHHHHHHHHHhh---chhhccccccceeecCcccEEecCcccccccccCCce
Confidence            999999999876422 245556678999999999999988   9999999999999999999999999999966554433


Q ss_pred             c--ccccccccccccccccCcccCcccccHHHHHHHHHHHh--CCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          281 R--TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM--GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       281 ~--~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt--g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .  ....-.++|||||.+.-+++|++||||+||+++||+++  ...||.......--    +......+..-........
T Consensus       694 ~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vv----en~~~~~~~~~~~~~l~~P  769 (807)
T KOG1094|consen  694 RVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVV----ENAGEFFRDQGRQVVLSRP  769 (807)
T ss_pred             eeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHH----HhhhhhcCCCCcceeccCC
Confidence            3  33456789999999999999999999999999999865  88898743211000    0001111111110001111


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      .-+...+.+++.+||..|-++||+++++...|++.
T Consensus       770 ~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~  804 (807)
T KOG1094|consen  770 PACPQGLYELMLRCWRRESEQRPSFEQLHLFLQED  804 (807)
T ss_pred             CcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHh
Confidence            12233488999999999999999999999998764

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=2.1e-36  Score=285.40  Aligned_cols=241  Identities=23%  Similarity=0.335  Sum_probs=178.1

Q ss_pred             cCcccceeeeecCceEEEEEEe-----CCCcEEEEEecc---------------------CCccccceEEEe--cCceEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-----PDGKVVALKKLH---------------------HSETEDSAFVVY--SPQCMF  194 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-----~~~~~vAvK~l~---------------------~~~~~~~~~~~~--~~~~~~  194 (412)
                      ++|++.+.||+|+||.||++..     .+++.||+|+++                     |+++......+.  .....+
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~   83 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLR   83 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceE
Confidence            4688889999999999999975     358899999753                     455544444443  234689


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      +|+||+++|+|.+++.....  .++|..+..++.|++.||+|||+.   +++||||||+||++++++.+||+|||+++..
T Consensus        84 lv~e~~~~~~L~~~l~~~~~--~l~~~~~~~~~~~l~~aL~~LH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~~~  158 (284)
T cd05081          84 LVMEYLPYGSLRDYLQKHRE--RLDHRKLLLYASQICKGMEYLGSK---RYVHRDLATRNILVESENRVKIGDFGLTKVL  158 (284)
T ss_pred             EEEEecCCCCHHHHHHhcCc--CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHhhEEECCCCeEEECCCcccccc
Confidence            99999999999999865432  489999999999999999999998   9999999999999999999999999999866


Q ss_pred             CCCCCCc---ccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccccc-----ccCCCCcc---hhhHH
Q 042435          275 DVDSSNR---TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSL-----SSSSGPKI---MLIDI  343 (412)
Q Consensus       275 ~~~~~~~---~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~-----~~~~~~~~---~~~~~  343 (412)
                      .......   ....++..|+|||++.+..++.++||||||+++|||++|..|+......     ........   .+.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (284)
T cd05081         159 PQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIEL  238 (284)
T ss_pred             cCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHH
Confidence            4332211   1122345699999998888999999999999999999988775422110     00000000   11122


Q ss_pred             hhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          344 LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      +......+....   ....+.+++.+||+.+|++|||+.|+++.|+.+
T Consensus       239 ~~~~~~~~~~~~---~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         239 LKNNGRLPAPPG---CPAEIYAIMKECWNNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             HhcCCcCCCCCC---CCHHHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence            222111111111   123488999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=1.2e-36  Score=290.32  Aligned_cols=239  Identities=26%  Similarity=0.365  Sum_probs=180.9

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCc--EEEEEec-----------------------cCCccccceEEEecCceEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGK--VVALKKL-----------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~--~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ++|++.+.||+|+||.||+|.+. ++.  .+|+|++                       +|+++......+...+..++|
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv   86 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   86 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEE
Confidence            56888999999999999999864 444  4577754                       355555556667778889999


Q ss_pred             EEeccCCceeeeeccCc-------------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcE
Q 042435          197 YEYMERGSLFCVLRDDD-------------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEA  263 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~  263 (412)
                      |||+++|+|.++++...             ....+++.+++.++.|++.||+|||+.   +++||||||+|||++.++.+
T Consensus        87 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dlkp~Nili~~~~~~  163 (303)
T cd05088          87 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVA  163 (303)
T ss_pred             EEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEecCCCcE
Confidence            99999999999886432             112578999999999999999999998   99999999999999999999


Q ss_pred             EEeecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhH
Q 042435          264 FVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLID  342 (412)
Q Consensus       264 kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~  342 (412)
                      ||+|||+++...... ......++..|+|||+..+..++.++|||||||++|||+| |..||....       . ....+
T Consensus       164 kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~-------~-~~~~~  234 (303)
T cd05088         164 KIADFGLSRGQEVYV-KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT-------C-AELYE  234 (303)
T ss_pred             EeCccccCcccchhh-hcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCC-------h-HHHHH
Confidence            999999986432111 1112234667999999988889999999999999999998 999986221       1 11111


Q ss_pred             HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCC
Q 042435          343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKK  396 (412)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  396 (412)
                      ..........+..   ....+.+++.+||+.+|++||++.++++.|+.+....+
T Consensus       235 ~~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~~~  285 (303)
T cd05088         235 KLPQGYRLEKPLN---CDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK  285 (303)
T ss_pred             HHhcCCcCCCCCC---CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhh
Confidence            1211111111111   12247889999999999999999999999988765544

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=6.7e-37  Score=284.35  Aligned_cols=229  Identities=28%  Similarity=0.421  Sum_probs=180.8

Q ss_pred             cccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEEec
Q 042435          145 FHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      |++.+.||+|+||+||++... +++.+|+|.+                       +|+++.............++||||+
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            567899999999999999875 4678999965                       4667766777777889999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++++|.+++...   ..+++..+..++.|+++||++||+.   +++|+||||+||++++++.++|+|||.+.........
T Consensus        81 ~~~~L~~~l~~~---~~~~~~~~~~~~~qi~~~L~~Lh~~---~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~  154 (260)
T PF00069_consen   81 PGGSLQDYLQKN---KPLSEEEILKIAYQILEALAYLHSK---GIVHRDIKPENILLDENGEVKLIDFGSSVKLSENNEN  154 (260)
T ss_dssp             TTEBHHHHHHHH---SSBBHHHHHHHHHHHHHHHHHHHHT---TEEESSBSGGGEEESTTSEEEESSGTTTEESTSTTSE
T ss_pred             cccccccccccc---ccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccc
Confidence            999999998722   2589999999999999999999999   9999999999999999999999999999764333334


Q ss_pred             ccccccccccccccccc-CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh---h
Q 042435          281 RTLQAGTYGYIALELVY-TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK---I  356 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~-~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  356 (412)
                      .....++..|+|||+.. +..++.++||||+|+++|+|++|..||...        ....................   .
T Consensus       155 ~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  226 (260)
T PF00069_consen  155 FNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEES--------NSDDQLEIIEKILKRPLPSSSQQS  226 (260)
T ss_dssp             BSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTS--------SHHHHHHHHHHHHHTHHHHHTTSH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc--------cchhhhhhhhhccccccccccccc
Confidence            44567899999999998 888999999999999999999999998732        00111111111111100000   0


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ......+.+++.+||+.||++||++.+++++
T Consensus       227 ~~~~~~l~~li~~~l~~~p~~R~~~~~l~~~  257 (260)
T PF00069_consen  227 REKSEELRDLIKKMLSKDPEQRPSAEELLKH  257 (260)
T ss_dssp             TTSHHHHHHHHHHHSSSSGGGSTTHHHHHTS
T ss_pred             chhHHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            0011458899999999999999999999864

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-36  Score=292.59  Aligned_cols=233  Identities=21%  Similarity=0.278  Sum_probs=174.0

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||++... +++.||+|.+                        +|+++......+.+++..++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            47899999999999999999864 6899999975                        3556666666778889999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++....  ..+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||++......
T Consensus        81 e~~~g~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~  155 (331)
T cd05597          81 DYYVGGDLLTLLSKFE--DRLPEDMARFYLAEMVLAIDSVHQL---GYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLAD  155 (331)
T ss_pred             ecCCCCcHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeEECCCCHHHEEECCCCCEEEEECCceeecCCC
Confidence            9999999999986532  2488899999999999999999998   9999999999999999999999999998765433


Q ss_pred             CCC-cccccccccccccccccC-----cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCc
Q 042435          278 SSN-RTLQAGTYGYIALELVYT-----MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP  351 (412)
Q Consensus       278 ~~~-~~~~~gt~~y~aPE~~~~-----~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (412)
                      ... .....||+.|+|||++..     ..++.++|||||||++|||++|+.||....       .......+........
T Consensus       156 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~-------~~~~~~~i~~~~~~~~  228 (331)
T cd05597         156 GTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAES-------LVETYGKIMNHKEHFQ  228 (331)
T ss_pred             CCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCC-------HHHHHHHHHcCCCccc
Confidence            222 223468999999999863     457889999999999999999999986321       0111111111111011


Q ss_pred             cchhhHHHHHHHHHHHHhcCcC--CCCCCCCHHHHHHH
Q 042435          352 INQKIIQDIILVSTIALACLRS--KPKSRPTMQRISQE  387 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~--dP~~RPs~~evl~~  387 (412)
                      .+.........+.+++.+|+..  ++..||++.+++++
T Consensus       229 ~~~~~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~h  266 (331)
T cd05597         229 FPPDVTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDH  266 (331)
T ss_pred             CCCccCCCCHHHHHHHHHHccCcccccCCCCHHHHhcC
Confidence            1111111122356677776644  44458899999888

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=9.5e-37  Score=294.60  Aligned_cols=233  Identities=20%  Similarity=0.286  Sum_probs=175.1

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc------------------------CCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||+++.. +++.||+|.+.                        |+++......+...+..++||
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            47899999999999999999774 68899999753                        344444555577788999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++.....  .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        81 Ey~~gg~L~~~l~~~~~--~l~~~~~~~~~~qi~~~L~~lH~~---~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~  155 (331)
T cd05624          81 DYYVGGDLLTLLSKFED--RLPEDMARFYIAEMVLAIHSIHQL---HYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQD  155 (331)
T ss_pred             eCCCCCcHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCchHHEEEcCCCCEEEEeccceeeccCC
Confidence            99999999999875322  478889999999999999999998   9999999999999999999999999999765443


Q ss_pred             CCC-cccccccccccccccccC-----cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCc
Q 042435          278 SSN-RTLQAGTYGYIALELVYT-----MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP  351 (412)
Q Consensus       278 ~~~-~~~~~gt~~y~aPE~~~~-----~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (412)
                      ... .....||+.|+|||++.+     ..++.++|||||||++|||++|+.||....       .......+.......+
T Consensus       156 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~-------~~~~~~~i~~~~~~~~  228 (331)
T cd05624         156 GTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAES-------LVETYGKIMNHEERFQ  228 (331)
T ss_pred             CceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCCC-------HHHHHHHHHcCCCccc
Confidence            222 233569999999999865     467889999999999999999999986321       1111112221111111


Q ss_pred             cchhhHHHHHHHHHHHHhcCcCCCCC--CCCHHHHHHH
Q 042435          352 INQKIIQDIILVSTIALACLRSKPKS--RPTMQRISQE  387 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~dP~~--RPs~~evl~~  387 (412)
                      .+.........+.+++.+|+..++++  |+++++++++
T Consensus       229 ~p~~~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h  266 (331)
T cd05624         229 FPSHITDVSEEAKDLIQRLICSRERRLGQNGIEDFKKH  266 (331)
T ss_pred             CCCccccCCHHHHHHHHHHccCchhhcCCCCHHHHhcC
Confidence            11111112234778888888765543  4688888766

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-36  Score=284.87  Aligned_cols=244  Identities=24%  Similarity=0.374  Sum_probs=184.9

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEec----CceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYS----PQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~----~~~~~lv~e  198 (412)
                      .+..+.+.||+|.||+||+|+| .|+.||||.+                    +|+|+..+...-..    -..+|||++
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTd  289 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRW-RGEDVAVKIFSSRDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTD  289 (513)
T ss_pred             heeEEEEEecCccccceeeccc-cCCceEEEEecccchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEeee
Confidence            4567789999999999999999 6899999975                    56666554333221    236899999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhC-----CCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHD-----CTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~-----~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      |.++|||+|+|...    .++-...++++..+|.||++||..     ..|.|.|||||+.|||+..++.+.|+|+|+|-.
T Consensus       290 YHe~GSL~DyL~r~----tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~  365 (513)
T KOG2052|consen  290 YHEHGSLYDYLNRN----TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR  365 (513)
T ss_pred             cccCCcHHHHHhhc----cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEE
Confidence            99999999999875    489999999999999999999974     468899999999999999999999999999976


Q ss_pred             cCCCCC----CcccccccccccccccccCcc----c-C-cccccHHHHHHHHHHHhC----------CCCcccccccccC
Q 042435          274 LDVDSS----NRTLQAGTYGYIALELVYTMV----V-T-EKCVIYSFGVVALEVLMG----------THPGELLLSLSSS  333 (412)
Q Consensus       274 ~~~~~~----~~~~~~gt~~y~aPE~~~~~~----~-s-~ksDv~S~Gvil~elltg----------~~P~~~~~~~~~~  333 (412)
                      ......    .....+||-+|||||++....    + + ..+||||||.++||+..+          +.||.+..   ..
T Consensus       366 h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~V---p~  442 (513)
T KOG2052|consen  366 HDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVV---PS  442 (513)
T ss_pred             ecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCC---CC
Confidence            544321    224568999999999986432    1 1 359999999999999752          35665332   12


Q ss_pred             CCCcchhhHHh-hhccCCccchhh--HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          334 SGPKIMLIDIL-YQRLSPPINQKI--IQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       334 ~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                      ....+.+.+++ .++++|.++..+  .+.+..+.+++..||..+|..|-|+--+-+.|.++...
T Consensus       443 DPs~eeMrkVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~~~  506 (513)
T KOG2052|consen  443 DPSFEEMRKVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKLSNS  506 (513)
T ss_pred             CCCHHHHhcceeecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhcC
Confidence            22222333332 334444433322  23455688999999999999999999999999888754

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=3.4e-36  Score=280.17  Aligned_cols=224  Identities=20%  Similarity=0.294  Sum_probs=170.9

Q ss_pred             eeecCceEEEEEEeC---CCcEEEEEecc----------------------CCccccceEEEecCceEEEEEEeccCCce
Q 042435          151 IGTGGYDSVYKAELP---DGKVVALKKLH----------------------HSETEDSAFVVYSPQCMFFIYEYMERGSL  205 (412)
Q Consensus       151 lG~G~~g~Vy~~~~~---~~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~lv~ey~~~gsL  205 (412)
                      ||+|+||.||+|.+.   ++..||+|.+.                      |+++......+ ..+..++||||+++|+|
T Consensus         3 ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~-~~~~~~lv~e~~~~~~L   81 (257)
T cd05115           3 LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVC-EAEALMLVMEMASGGPL   81 (257)
T ss_pred             cCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEE-cCCCeEEEEEeCCCCCH
Confidence            899999999999763   35679999764                      33443333333 45678999999999999


Q ss_pred             eeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC---cc
Q 042435          206 FCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN---RT  282 (412)
Q Consensus       206 ~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~---~~  282 (412)
                      .+++....  ..+++.++++++.|++.||+|||++   +++||||||+||+++.++.+||+|||+++........   ..
T Consensus        82 ~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  156 (257)
T cd05115          82 NKFLSGKK--DEITVSNVVELMHQVSMGMKYLEGK---NFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARS  156 (257)
T ss_pred             HHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhc---CeeecccchheEEEcCCCcEEeccCCccccccCCccceeccC
Confidence            99886533  2589999999999999999999998   9999999999999999999999999999865433221   11


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDII  361 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (412)
                      ...++..|+|||.+....++.++||||||+++||+++ |..||....        .......+........+..   ...
T Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~---~~~  225 (257)
T cd05115         157 AGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMK--------GPEVMSFIEQGKRLDCPAE---CPP  225 (257)
T ss_pred             CCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCC--------HHHHHHHHHCCCCCCCCCC---CCH
Confidence            2233578999999988889999999999999999996 999986321        1112222222222221121   123


Q ss_pred             HHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          362 LVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       362 ~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      .+.+++.+||..||++||++.+|.+.|+..
T Consensus       226 ~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         226 EMYALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence            478899999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.5e-36  Score=279.30  Aligned_cols=234  Identities=27%  Similarity=0.355  Sum_probs=183.6

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEe
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      .++|++.+.||+|+||.||+|... +++.+|+|.+                     +|+++..........+..+++|||
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~   81 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEY   81 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeC
Confidence            367899999999999999999774 5788999953                     566777766777788899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++++|.+++....  ..++..++..++.|++.||+|||++   +++|+||||+||++++++.++|+|||++........
T Consensus        82 ~~~~~l~~~~~~~~--~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~  156 (262)
T cd06613          82 CGGGSLQDIYQVTR--GPLSELQIAYVCRETLKGLAYLHET---GKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIA  156 (262)
T ss_pred             CCCCcHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHhC---CceecCCChhhEEECCCCCEEECccccchhhhhhhh
Confidence            99999999886542  2588999999999999999999998   999999999999999999999999999876554332


Q ss_pred             CcccccccccccccccccCc---ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          280 NRTLQAGTYGYIALELVYTM---VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~---~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      ......++..|+|||.+.+.   .++.++||||||+++|||+||+.||....       ..............++.....
T Consensus       157 ~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~-------~~~~~~~~~~~~~~~~~~~~~  229 (262)
T cd06613         157 KRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLH-------PMRALFLISKSNFPPPKLKDK  229 (262)
T ss_pred             ccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCC-------HHHHHHHHHhccCCCccccch
Confidence            33445688899999998776   78999999999999999999999986321       111111111111111111112


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ......+.+++.+||..+|.+|||+.+++++
T Consensus       230 ~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~  260 (262)
T cd06613         230 EKWSPVFHDFIKKCLTKDPKKRPTATKLLQH  260 (262)
T ss_pred             hhhhHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            2233458899999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=1.8e-36  Score=305.96  Aligned_cols=243  Identities=17%  Similarity=0.191  Sum_probs=172.6

Q ss_pred             HHHHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEeccCC--------------------c------cccceEEEe
Q 042435          136 ENLIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHHS--------------------E------TEDSAFVVY  188 (412)
Q Consensus       136 ~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~~--------------------~------~~~~~~~~~  188 (412)
                      +++...+++|++.++||+|+||+||+|.. .+++.||||+++..                    +      +......+.
T Consensus       122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~  201 (467)
T PTZ00284        122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQ  201 (467)
T ss_pred             CccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEE
Confidence            34455678999999999999999999976 46889999987431                    1      111111222


Q ss_pred             -cCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC------
Q 042435          189 -SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL------  261 (412)
Q Consensus       189 -~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~------  261 (412)
                       .....++|||++ +++|.+++....   .+++..+..|+.|++.||+|||+++  +|+||||||+|||++.++      
T Consensus       202 ~~~~~~~iv~~~~-g~~l~~~l~~~~---~l~~~~~~~i~~qi~~aL~yLH~~~--gIiHrDlKP~NILl~~~~~~~~~~  275 (467)
T PTZ00284        202 NETGHMCIVMPKY-GPCLLDWIMKHG---PFSHRHLAQIIFQTGVALDYFHTEL--HLMHTDLKPENILMETSDTVVDPV  275 (467)
T ss_pred             cCCceEEEEEecc-CCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhcC--CeecCCCCHHHEEEecCCcccccc
Confidence             245789999988 678888776543   5899999999999999999999732  899999999999998655      


Q ss_pred             ----------cEEEeecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccc
Q 042435          262 ----------EAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS  331 (412)
Q Consensus       262 ----------~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~  331 (412)
                                .+||+|||.+....   .......||+.|+|||++.+..++.++|||||||++|||++|+.||+......
T Consensus       276 ~~~~~~~~~~~vkl~DfG~~~~~~---~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~  352 (467)
T PTZ00284        276 TNRALPPDPCRVRICDLGGCCDER---HSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDNLE  352 (467)
T ss_pred             cccccCCCCceEEECCCCccccCc---cccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH
Confidence                      49999999876432   22234579999999999999999999999999999999999999996321100


Q ss_pred             ------c--CCCCc--------chhhHHhhhc--cCCccch------------hhHHHHHHHHHHHHhcCcCCCCCCCCH
Q 042435          332 ------S--SSGPK--------IMLIDILYQR--LSPPINQ------------KIIQDIILVSTIALACLRSKPKSRPTM  381 (412)
Q Consensus       332 ------~--~~~~~--------~~~~~~~~~~--~~~~~~~------------~~~~~~~~~~~l~~~Cl~~dP~~RPs~  381 (412)
                            .  ...+.        ....+.....  +.+....            ........+.+|+.+||+.||++|||+
T Consensus       353 ~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta  432 (467)
T PTZ00284        353 HLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNA  432 (467)
T ss_pred             HHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCH
Confidence                  0  00000        0000000000  0000000            000012347799999999999999999


Q ss_pred             HHHHHH
Q 042435          382 QRISQE  387 (412)
Q Consensus       382 ~evl~~  387 (412)
                      +|+++|
T Consensus       433 ~e~L~H  438 (467)
T PTZ00284        433 RQMTTH  438 (467)
T ss_pred             HHHhcC
Confidence            999975

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=1.8e-36  Score=285.57  Aligned_cols=241  Identities=24%  Similarity=0.337  Sum_probs=182.4

Q ss_pred             ccHHHHHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc---------------------CCccccceEEEe--
Q 042435          133 ILYENLIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH---------------------HSETEDSAFVVY--  188 (412)
Q Consensus       133 ~~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~---------------------~~~~~~~~~~~~--  188 (412)
                      .++.++..+.+.|++.+.||+|+||.||+|.. .+++.+|+|.+.                     |+++......+.  
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   85 (282)
T cd06636           6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKK   85 (282)
T ss_pred             hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcc
Confidence            46677778889999999999999999999977 568899999653                     344433333332  


Q ss_pred             ----cCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEE
Q 042435          189 ----SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF  264 (412)
Q Consensus       189 ----~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~k  264 (412)
                          .....+++|||+++|+|.+++..... ..+++..+..++.|++.||+|||+.   +++|+||||+||++++++.++
T Consensus        86 ~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dl~~~nili~~~~~~~  161 (282)
T cd06636          86 SPPGHDDQLWLVMEFCGAGSVTDLVKNTKG-NALKEDWIAYICREILRGLAHLHAH---KVIHRDIKGQNVLLTENAEVK  161 (282)
T ss_pred             cccCCCCEEEEEEEeCCCCcHHHHHHHccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEE
Confidence                24578999999999999998865432 2478888999999999999999998   999999999999999999999


Q ss_pred             EeecCCccccCCCCCCccccccccccccccccc-----CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcch
Q 042435          265 VADFGTVRLLDVDSSNRTLQAGTYGYIALELVY-----TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIM  339 (412)
Q Consensus       265 l~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~  339 (412)
                      |+|||++..............|+..|+|||.+.     ...++.++|||||||++|||++|+.||.....       ...
T Consensus       162 l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~-------~~~  234 (282)
T cd06636         162 LVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHP-------MRA  234 (282)
T ss_pred             EeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCH-------Hhh
Confidence            999999876543333334456899999999875     34678899999999999999999999863211       011


Q ss_pred             hhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          340 LIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .... ........  ........+.+++.+||+.||.+|||+.|++++
T Consensus       235 ~~~~-~~~~~~~~--~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~~  279 (282)
T cd06636         235 LFLI-PRNPPPKL--KSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLKH  279 (282)
T ss_pred             hhhH-hhCCCCCC--cccccCHHHHHHHHHHhCCChhhCcCHHHHhcC
Confidence            1111 11111110  001122348899999999999999999999764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.5e-36  Score=280.14  Aligned_cols=234  Identities=24%  Similarity=0.391  Sum_probs=183.1

Q ss_pred             hcCcccceeeeecCceEEEEEEeCCCcEEEEEecc--------------------CCccccceEEEecCceEEEEEEecc
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLH--------------------HSETEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~--------------------~~~~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      .++|.+.+.||+|+||.||+|...+++.||||.++                    |+++......+......++||||++
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~   84 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMS   84 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCccCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEeccC
Confidence            46789999999999999999998888899999764                    4444444555666688999999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC-
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-  280 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~-  280 (412)
                      +++|.+++..... ..+++.++..++.+++.|++|||++   +++|+||||+||++++++.++++|||+++........ 
T Consensus        85 ~~~L~~~i~~~~~-~~~~~~~~~~~~~~i~~al~~lh~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~  160 (261)
T cd05034          85 KGSLLDFLKSGEG-KKLRLPQLVDMAAQIAEGMAYLESR---NYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTA  160 (261)
T ss_pred             CCCHHHHHhcccc-CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcchheEEEcCCCCEEECccccceeccchhhhh
Confidence            9999999876432 2589999999999999999999998   9999999999999999999999999998865432111 


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      .....++..|+|||.+.+..++.++||||||+++||++| |+.||...       ... ...+........+.+...   
T Consensus       161 ~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~-------~~~-~~~~~~~~~~~~~~~~~~---  229 (261)
T cd05034         161 REGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGM-------TNR-EVLEQVERGYRMPRPPNC---  229 (261)
T ss_pred             hhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC-------CHH-HHHHHHHcCCCCCCCCCC---
Confidence            112234568999999998889999999999999999999 99998622       111 112222222221111111   


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      ...+.+++.+|++.+|++||+++++.+.|+.
T Consensus       230 ~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         230 PEELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             CHHHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence            2347899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=2.8e-36  Score=288.42  Aligned_cols=239  Identities=17%  Similarity=0.212  Sum_probs=175.8

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ++|.+.+.||+|+||.||+|... +++.||+|.+                      +|+++......+..++..++||||
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   85 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEY   85 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeC
Confidence            56889999999999999999764 6889999965                      355666666667788899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++ +|.+++.....  .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++.......
T Consensus        86 ~~~-~l~~~~~~~~~--~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~  159 (309)
T cd07872          86 LDK-DLKQYMDDCGN--IMSMHNVKIFLYQILRGLAYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSVPTK  159 (309)
T ss_pred             CCC-CHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECccccceecCCCcc
Confidence            975 78777654432  478899999999999999999998   999999999999999999999999999976543333


Q ss_pred             CcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcchhhH------Hh
Q 042435          280 NRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKIMLID------IL  344 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~~~~~------~~  344 (412)
                      ......+++.|+|||.+.+ ..++.++|||||||++|||+||+.||........        ..........      ..
T Consensus       160 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (309)
T cd07872         160 TYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFK  239 (309)
T ss_pred             ccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhh
Confidence            3334567899999998865 4688999999999999999999999863211000        0000000000      00


Q ss_pred             hhccCCccc----hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          345 YQRLSPPIN----QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       345 ~~~~~~~~~----~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .........    .........+.+++.+|++.||.+|||+.|++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h  286 (309)
T cd07872         240 NYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMKH  286 (309)
T ss_pred             hhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhcC
Confidence            000000000    0000112347789999999999999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=3.5e-36  Score=281.47  Aligned_cols=239  Identities=23%  Similarity=0.300  Sum_probs=180.7

Q ss_pred             HHHHhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------cCCccccceEEEecCceEE
Q 042435          137 NLIDATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------HHSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       137 ~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~  194 (412)
                      |++.+++++.....||+|+||.||+|... ++..||+|.+                     +|+++......+..++..+
T Consensus         2 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   81 (268)
T cd06624           2 EYEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFK   81 (268)
T ss_pred             CcccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEE
Confidence            34567778888889999999999999764 6788999954                     4666666666677888999


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC-CCcEEEeecCCccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS-NLEAFVADFGTVRL  273 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~-~~~~kl~DfGla~~  273 (412)
                      +|+||+++++|.+++.........++..+..++.|++.||+|||+.   +|+||||||+||+++. ++.++|+|||++..
T Consensus        82 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~  158 (268)
T cd06624          82 IFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDN---QIVHRDIKGDNVLVNTYSGVVKISDFGTSKR  158 (268)
T ss_pred             EEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCeEEEecchhhee
Confidence            9999999999999887543221227888899999999999999998   9999999999999976 67999999999876


Q ss_pred             cCCCCCCcccccccccccccccccCcc--cCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCc
Q 042435          274 LDVDSSNRTLQAGTYGYIALELVYTMV--VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP  351 (412)
Q Consensus       274 ~~~~~~~~~~~~gt~~y~aPE~~~~~~--~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (412)
                      ............|+..|+|||++....  ++.++||||||+++|||++|+.||.....      ..............+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~------~~~~~~~~~~~~~~~~  232 (268)
T cd06624         159 LAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGE------PQAAMFKVGMFKIHPE  232 (268)
T ss_pred             cccCCCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccC------hhhhHhhhhhhccCCC
Confidence            543333333346889999999986543  78899999999999999999999863211      0000101100011111


Q ss_pred             cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .+..   ....+.+++.+||+.+|++|||+.|++++
T Consensus       233 ~~~~---~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  265 (268)
T cd06624         233 IPES---LSAEAKNFILRCFEPDPDKRASAHDLLQD  265 (268)
T ss_pred             CCcc---cCHHHHHHHHHHcCCCchhCCCHHHHHhC
Confidence            1111   12237889999999999999999999865

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=3.6e-36  Score=281.34  Aligned_cols=233  Identities=27%  Similarity=0.389  Sum_probs=181.1

Q ss_pred             cCcccceeeeecCceEEEEEEeC----CCcEEEEEec----------------------cCCccccceEEEecCceEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP----DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~----~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ++|++.+.||+|+||.||+|...    .+..+|+|.+                      +|+++......+...+..++|
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIV   83 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEE
Confidence            46888999999999999999763    2347999965                      356666666667788899999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++++|.+++.....  .+++.+++.++.|++.||+|||+.   +++||||||+||+++.++.++++|||+++....
T Consensus        84 ~e~~~~~~L~~~~~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~  158 (267)
T cd05066          84 TEYMENGSLDAFLRKHDG--QFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILVNSNLVCKVSDFGLSRVLED  158 (267)
T ss_pred             EEcCCCCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CEeehhhchhcEEECCCCeEEeCCCCccccccc
Confidence            999999999999875432  489999999999999999999998   999999999999999999999999999986644


Q ss_pred             CCCCc---ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          277 DSSNR---TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       277 ~~~~~---~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      .....   ....++..|+|||.+.+..++.++|+||||+++||+++ |..||....       .. .....+......+.
T Consensus       159 ~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~-------~~-~~~~~~~~~~~~~~  230 (267)
T cd05066         159 DPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMS-------NQ-DVIKAIEEGYRLPA  230 (267)
T ss_pred             ccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCC-------HH-HHHHHHhCCCcCCC
Confidence            32211   11223568999999998889999999999999999887 999986321       11 11111221111111


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      ..   .....+.+++.+||+.+|.+||++.++++.|+++
T Consensus       231 ~~---~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         231 PM---DCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             CC---CCCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence            11   1223478899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=2.8e-36  Score=285.14  Aligned_cols=230  Identities=20%  Similarity=0.253  Sum_probs=174.0

Q ss_pred             cccceeeeecCceEEEEEEe-CCCcEEEEEecc------------------------CCccccceEEEecCceEEEEEEe
Q 042435          145 FHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      |+..+.||+|+||+||+|.. .+++.+|+|.+.                        |+++......+..++..+++|||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            66778999999999999976 468999999763                        33333334446677889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++++|.+++..... ..+++..+..++.|++.||.|||+.   +|+||||||+||++++++.++|+|||++....... 
T Consensus        82 ~~~~~L~~~~~~~~~-~~~~~~~~~~~~~ql~~~l~~lH~~---~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~-  156 (285)
T cd05632          82 MNGGDLKFHIYNMGN-PGFEEERALFYAAEILCGLEDLHRE---NTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGE-  156 (285)
T ss_pred             ccCccHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEECCCCCEEEecCCcceecCCCC-
Confidence            999999887764322 2589999999999999999999998   99999999999999999999999999987653322 


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      ......|+..|+|||++.+..++.++|+||||+++|||++|+.||....       .... .+.+...............
T Consensus       157 ~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~  228 (285)
T cd05632         157 SIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRK-------EKVK-REEVDRRVLETEEVYSAKF  228 (285)
T ss_pred             cccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCC-------HHHH-HHHHHHhhhccccccCccC
Confidence            2233468999999999988889999999999999999999999987321       1100 1111111111000000111


Q ss_pred             HHHHHHHHHhcCcCCCCCCCC-----HHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRPT-----MQRISQE  387 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  387 (412)
                      ...+.+++.+||+.||++||+     +++++++
T Consensus       229 ~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~  261 (285)
T cd05632         229 SEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRH  261 (285)
T ss_pred             CHHHHHHHHHHccCCHhHcCCCcccChHHHHcC
Confidence            223778999999999999999     6677665

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=2e-36  Score=285.76  Aligned_cols=244  Identities=23%  Similarity=0.336  Sum_probs=183.8

Q ss_pred             ccHHHHHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc---------------------CCccccceEEEe--
Q 042435          133 ILYENLIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH---------------------HSETEDSAFVVY--  188 (412)
Q Consensus       133 ~~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~---------------------~~~~~~~~~~~~--  188 (412)
                      +.++.+.+++++|++.+.||+|+||.||++.. .+++.+|+|.++                     |+++......+.  
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   87 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKK   87 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeeeec
Confidence            55678888999999999999999999999976 468899999753                     344444433332  


Q ss_pred             ---cCceEEEEEEeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEE
Q 042435          189 ---SPQCMFFIYEYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF  264 (412)
Q Consensus       189 ---~~~~~~lv~ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~k  264 (412)
                         .++..++||||+++++|.+++.... ....+++..+..++.|++.||.|||+.   +++||||||+||++++++.++
T Consensus        88 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~~k  164 (286)
T cd06638          88 DVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVN---KTIHRDVKGNNILLTTEGGVK  164 (286)
T ss_pred             ccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhC---CccccCCCHHhEEECCCCCEE
Confidence               3456899999999999998775321 123588899999999999999999998   999999999999999999999


Q ss_pred             EeecCCccccCCCCCCcccccccccccccccccC-----cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcch
Q 042435          265 VADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT-----MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIM  339 (412)
Q Consensus       265 l~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~  339 (412)
                      |+|||+++.............|++.|+|||++..     ..++.++|||||||++|||++|+.||......       ..
T Consensus       165 l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~-------~~  237 (286)
T cd06638         165 LVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPM-------RA  237 (286)
T ss_pred             EccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchh-------HH
Confidence            9999999866543333344568999999998753     45788999999999999999999998632110       11


Q ss_pred             hhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          340 LIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      ..... ....+.. .........+.+++.+||+.||++|||+.|++++.
T Consensus       238 ~~~~~-~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~~  284 (286)
T cd06638         238 LFKIP-RNPPPTL-HQPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHV  284 (286)
T ss_pred             Hhhcc-ccCCCcc-cCCCCcCHHHHHHHHHHccCCcccCCCHHHHhhcc
Confidence            11110 1110000 00001122478899999999999999999999764

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=2.9e-36  Score=282.14  Aligned_cols=234  Identities=22%  Similarity=0.322  Sum_probs=181.1

Q ss_pred             CcccceeeeecCceEEEEEEeCC--CcEEEEEec--------------------------------cCCccccceEEEec
Q 042435          144 YFHIRYCIGTGGYDSVYKAELPD--GKVVALKKL--------------------------------HHSETEDSAFVVYS  189 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~~--~~~vAvK~l--------------------------------~~~~~~~~~~~~~~  189 (412)
                      +|++.+.||+|+||.||+|....  ++.+|+|.+                                +|+++......+..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            47888999999999999998754  788999854                                34555555556777


Q ss_pred             CceEEEEEEeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeec
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADF  268 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~Df  268 (412)
                      .+..+++|||+++++|.+++.... ....+++..++.++.|++.||.|||+..  +++|+||||+||+++.++.++|+||
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~--~i~H~dl~~~nil~~~~~~~~l~df  158 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEK--RIVHRDLTPNNIMLGEDDKVTITDF  158 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCC--ceeecCCCHHHEEECCCCcEEEecc
Confidence            889999999999999988875421 2235889999999999999999999631  7999999999999999999999999


Q ss_pred             CCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhcc
Q 042435          269 GTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRL  348 (412)
Q Consensus       269 Gla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~  348 (412)
                      |.+....... ......|+..|+|||.+.+..++.++||||||+++|||++|+.||...       ..............
T Consensus       159 g~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~-------~~~~~~~~~~~~~~  230 (269)
T cd08528         159 GLAKQKQPES-KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYST-------NMLSLATKIVEAVY  230 (269)
T ss_pred             cceeeccccc-ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCccccc-------CHHHHHHHHhhccC
Confidence            9998654433 334456889999999999888999999999999999999999998622       11111111111111


Q ss_pred             CCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          349 SPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       349 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      . +...  ......+.+++.+||+.||++||++.|+.+++++
T Consensus       231 ~-~~~~--~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~~  269 (269)
T cd08528         231 E-PLPE--GMYSEDVTDVITSCLTPDAEARPDIIQVSAMISD  269 (269)
T ss_pred             C-cCCc--ccCCHHHHHHHHHHCCCCCccCCCHHHHHHHhcC
Confidence            1 1111  0112347889999999999999999999998863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=2.6e-36  Score=285.90  Aligned_cols=243  Identities=25%  Similarity=0.331  Sum_probs=183.6

Q ss_pred             ccHHHHHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc---------------------CCccccceEEEecC
Q 042435          133 ILYENLIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH---------------------HSETEDSAFVVYSP  190 (412)
Q Consensus       133 ~~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~---------------------~~~~~~~~~~~~~~  190 (412)
                      ++..++.+++++|++.+.||+|+||.||++.. .+++.+|+|.+.                     |+++......+...
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~   91 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYKA   91 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEec
Confidence            45677788899999999999999999999977 568899999763                     44444444444332


Q ss_pred             -----ceEEEEEEeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEE
Q 042435          191 -----QCMFFIYEYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF  264 (412)
Q Consensus       191 -----~~~~lv~ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~k  264 (412)
                           ...++|+||+++|+|.++++... ....+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+|
T Consensus        92 ~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~nili~~~~~~k  168 (291)
T cd06639          92 DKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNN---RIIHRDVKGNNILLTTEGGVK  168 (291)
T ss_pred             cccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCCCEE
Confidence                 46899999999999998875421 123589999999999999999999998   999999999999999999999


Q ss_pred             EeecCCccccCCCCCCcccccccccccccccccCc-----ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcch
Q 042435          265 VADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM-----VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIM  339 (412)
Q Consensus       265 l~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~  339 (412)
                      |+|||+++.............|+..|+|||.+...     .++.++|||||||++|||++|+.||....       ....
T Consensus       169 l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~-------~~~~  241 (291)
T cd06639         169 LVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMH-------PVKT  241 (291)
T ss_pred             EeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCc-------HHHH
Confidence            99999988654433233345688999999987543     36889999999999999999999986321       1111


Q ss_pred             hhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          340 LIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..++... ..+.. .........+.+++.+||+.+|++||++.|++++
T Consensus       242 ~~~~~~~-~~~~~-~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~~  287 (291)
T cd06639         242 LFKIPRN-PPPTL-LHPEKWCRSFNHFISQCLIKDFEARPSVTHLLEH  287 (291)
T ss_pred             HHHHhcC-CCCCC-CcccccCHHHHHHHHHHhhcChhhCcCHHHHhcC
Confidence            1111111 11110 0111122348899999999999999999999875

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=4.5e-36  Score=280.94  Aligned_cols=233  Identities=28%  Similarity=0.411  Sum_probs=179.6

Q ss_pred             cCcccceeeeecCceEEEEEEeCC-C---cEEEEEecc----------------------CCccccceEEEecCceEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPD-G---KVVALKKLH----------------------HSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~-~---~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ++|++.+.||+|+||.||+|.... +   ..||+|.++                      |+++......+..++..++|
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv   83 (269)
T cd05065           4 SCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMII   83 (269)
T ss_pred             HHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEE
Confidence            357888999999999999998743 3   369999753                      55556666667778889999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++|+|.+++.....  .+++.+++.++.|++.||+|||+.   +++||||||+||+++.++.++++|||+++....
T Consensus        84 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~~l~~al~~lH~~---g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~  158 (269)
T cd05065          84 TEFMENGALDSFLRQNDG--QFTVIQLVGMLRGIAAGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRFLED  158 (269)
T ss_pred             EecCCCCcHHHHHhhCCC--CCCHHHHHHHHHHHHHHHHHHHHC---CEeecccChheEEEcCCCcEEECCCcccccccc
Confidence            999999999998875432  489999999999999999999998   999999999999999999999999999876543


Q ss_pred             CCCCc--c-ccc--ccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCC
Q 042435          277 DSSNR--T-LQA--GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSP  350 (412)
Q Consensus       277 ~~~~~--~-~~~--gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (412)
                      .....  . ...  .+..|+|||.+.+..++.++||||||+++||+++ |..||....       . ......+......
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~-------~-~~~~~~i~~~~~~  230 (269)
T cd05065         159 DTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMS-------N-QDVINAIEQDYRL  230 (269)
T ss_pred             CccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCC-------H-HHHHHHHHcCCcC
Confidence            32211  1 111  2457999999998899999999999999999887 999986321       1 1112222221111


Q ss_pred             ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       351 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      +.+.   .....+.+++.+||+.+|++||++.+++..|+++
T Consensus       231 ~~~~---~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         231 PPPM---DCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             CCcc---cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            1111   1223478899999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=2.4e-36  Score=302.37  Aligned_cols=242  Identities=18%  Similarity=0.206  Sum_probs=171.1

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------cCCccccceEEEec--------CceEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------HHSETEDSAFVVYS--------PQCMF  194 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------~~~~~~~~~~~~~~--------~~~~~  194 (412)
                      ..++|++.+.||+|+||.||+|.. .+++.||||++                 +|+++......+..        ....+
T Consensus        64 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~  143 (440)
T PTZ00036         64 PNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDPQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLN  143 (440)
T ss_pred             cCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCcchHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEE
Confidence            346799999999999999999977 46899999965                 46666665443221        12467


Q ss_pred             EEEEeccCCceeeeeccC-cccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC-cEEEeecCCcc
Q 042435          195 FIYEYMERGSLFCVLRDD-DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL-EAFVADFGTVR  272 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~-~~kl~DfGla~  272 (412)
                      +||||+++ +|.+++... .....+++.....++.|++.||+|||+.   +|+||||||+|||++.++ .+||+|||+++
T Consensus       144 lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~---~IiHrDLKp~NILl~~~~~~vkL~DFGla~  219 (440)
T PTZ00036        144 VVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSK---FICHRDLKPQNLLIDPNTHTLKLCDFGSAK  219 (440)
T ss_pred             EEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCcCHHHEEEcCCCCceeeeccccch
Confidence            99999975 676655432 1223588999999999999999999998   999999999999998654 79999999998


Q ss_pred             ccCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc-------CCCCcchhhHHh
Q 042435          273 LLDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS-------SSGPKIMLIDIL  344 (412)
Q Consensus       273 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~-------~~~~~~~~~~~~  344 (412)
                      ....... .....||+.|+|||++.+ ..++.++|||||||++|||+||..||........       ...+........
T Consensus       220 ~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~  298 (440)
T PTZ00036        220 NLLAGQR-SVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEM  298 (440)
T ss_pred             hccCCCC-cccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHh
Confidence            6643322 223468999999998865 4689999999999999999999999863211000       000000000000


Q ss_pred             hh---c--cCCccchhhH-----HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          345 YQ---R--LSPPINQKII-----QDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       345 ~~---~--~~~~~~~~~~-----~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .+   .  .+........     .....+.+++.+||..||.+|||+.|++++
T Consensus       299 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~h  351 (440)
T PTZ00036        299 NPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALAD  351 (440)
T ss_pred             chhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCC
Confidence            00   0  0000000000     012347899999999999999999999865

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=5.9e-36  Score=281.93  Aligned_cols=231  Identities=22%  Similarity=0.272  Sum_probs=176.3

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ++|++.+.||+|+||.||+|.. .+++.||+|.+                      +|+++......+...+..++||||
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   80 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEF   80 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEec
Confidence            3678889999999999999975 57899999964                      345555556667778889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++++|..+.       .+++.....++.|++.||+|||+.   +++|+||||+||+++.++.++|+|||++......  
T Consensus        81 ~~~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~--  148 (279)
T cd06619          81 MDGGSLDVYR-------KIPEHVLGRIAVAVVKGLTYLWSL---KILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNS--  148 (279)
T ss_pred             CCCCChHHhh-------cCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCCHHHEEECCCCCEEEeeCCcceecccc--
Confidence            9999986442       367888899999999999999998   9999999999999999999999999999765332  


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      ......|+..|+|||++.+..++.++||||||+++|||++|+.||............. ...........+....  ...
T Consensus       149 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~  225 (279)
T cd06619         149 IAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPL-QLLQCIVDEDPPVLPV--GQF  225 (279)
T ss_pred             cccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchH-HHHHHHhccCCCCCCC--CcC
Confidence            2233578999999999998889999999999999999999999986422111111010 1111111111111101  011


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      ...+.+++.+||+.||++||+++|++++-
T Consensus       226 ~~~~~~li~~~l~~~P~~Rp~~~eil~~~  254 (279)
T cd06619         226 SEKFVHFITQCMRKQPKERPAPENLMDHP  254 (279)
T ss_pred             CHHHHHHHHHHhhCChhhCCCHHHHhcCc
Confidence            22478899999999999999999998763

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=2.6e-36  Score=283.91  Aligned_cols=226  Identities=27%  Similarity=0.379  Sum_probs=177.8

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------------cCCccccceEEEecCceEEEEEEec
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      .|+..+.||+|+||.||+|.. .+++.||+|.+                      +|+++......+..++..++||||+
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEcc
Confidence            356667899999999999976 46889999965                      3455555555577788899999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++++|.+++...    .+++..+..++.|++.|+.|||+.   +++|+||+|+||++++++.++++|||+++........
T Consensus        85 ~~~~L~~~~~~~----~~~~~~~~~~~~~i~~~l~~lH~~---~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~  157 (277)
T cd06642          85 GGGSALDLLKPG----PLEETYIATILREILKGLDYLHSE---RKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIK  157 (277)
T ss_pred             CCCcHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHhcC---CeeccCCChheEEEeCCCCEEEccccccccccCcchh
Confidence            999999888643    488999999999999999999988   9999999999999999999999999999866543333


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      .....++..|+|||++.+..++.++||||||+++|||+||+.|+....       +.. ..........+....   ...
T Consensus       158 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~-------~~~-~~~~~~~~~~~~~~~---~~~  226 (277)
T cd06642         158 RNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLH-------PMR-VLFLIPKNSPPTLEG---QYS  226 (277)
T ss_pred             hhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccc-------hhh-HHhhhhcCCCCCCCc---ccC
Confidence            334467889999999998889999999999999999999999986321       111 111111111111111   122


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..+.+++.+||+.+|++||++.|++++
T Consensus       227 ~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06642         227 KPFKEFVEACLNKDPRFRPTAKELLKH  253 (277)
T ss_pred             HHHHHHHHHHccCCcccCcCHHHHHHh
Confidence            347899999999999999999999985

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=8.3e-36  Score=277.83  Aligned_cols=232  Identities=23%  Similarity=0.399  Sum_probs=179.8

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEecc--------------------CCccccceEEEecCceEEEEEEeccC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLH--------------------HSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~--------------------~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++|++.+.||+|+||.||++...++..+|+|.++                    |+++......+.. ...+++|||+++
T Consensus         6 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~~~~   84 (260)
T cd05073           6 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEFMAK   84 (260)
T ss_pred             cceeEEeEecCccceEEEEEEecCCccEEEEecCCChhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEeCCC
Confidence            5688999999999999999998788889999664                    3444444444444 678999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC-Cc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS-NR  281 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~-~~  281 (412)
                      |+|.+++..... ..+++.+++.++.|++.||+|||+.   +++|+||||+||+++.++.+||+|||.+........ ..
T Consensus        85 ~~L~~~~~~~~~-~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~  160 (260)
T cd05073          85 GSLLDFLKSDEG-SKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAR  160 (260)
T ss_pred             CcHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCCcceeeccCCCcccc
Confidence            999999876432 3588999999999999999999988   999999999999999999999999999876543221 12


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ....++..|+|||++....++.++|+|||||++||++| |+.||....        .......+......+...   ...
T Consensus       161 ~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~---~~~  229 (260)
T cd05073         161 EGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS--------NPEVIRALERGYRMPRPE---NCP  229 (260)
T ss_pred             cCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCC--------HHHHHHHHhCCCCCCCcc---cCC
Confidence            22345678999999988889999999999999999999 899986321        111122222222111111   122


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      ..+.+++.+||+.+|++||++.++.+.|+.
T Consensus       230 ~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         230 EELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             HHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence            347899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-37  Score=283.86  Aligned_cols=244  Identities=23%  Similarity=0.285  Sum_probs=183.2

Q ss_pred             HHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEec----
Q 042435          138 LIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYS----  189 (412)
Q Consensus       138 l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~----  189 (412)
                      ..+....|...+.||+|+||.|+.+.. .+|+.||||++                       +|+|+.....+...    
T Consensus        17 ~~~i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~   96 (359)
T KOG0660|consen   17 LFEIPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRD   96 (359)
T ss_pred             EEeccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccc
Confidence            334455666678999999999999965 57999999965                       57777776665433    


Q ss_pred             -CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeec
Q 042435          190 -PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADF  268 (412)
Q Consensus       190 -~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~Df  268 (412)
                       -+.+|+|+|+| ..+|.+.++...   .++......+++|+++||.|+|+.   +|+||||||+|++++.+...||+||
T Consensus        97 ~f~DvYiV~elM-etDL~~iik~~~---~L~d~H~q~f~YQiLrgLKyiHSA---nViHRDLKPsNll~n~~c~lKI~DF  169 (359)
T KOG0660|consen   97 KFNDVYLVFELM-ETDLHQIIKSQQ---DLTDDHAQYFLYQILRGLKYIHSA---NVIHRDLKPSNLLLNADCDLKICDF  169 (359)
T ss_pred             ccceeEEehhHH-hhHHHHHHHcCc---cccHHHHHHHHHHHHHhcchhhcc---cccccccchhheeeccCCCEEeccc
Confidence             46789999999 459999998764   488889999999999999999998   9999999999999999999999999


Q ss_pred             CCccccCCC--CCCccccccccccccccccc-CcccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCc
Q 042435          269 GTVRLLDVD--SSNRTLQAGTYGYIALELVY-TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPK  337 (412)
Q Consensus       269 Gla~~~~~~--~~~~~~~~gt~~y~aPE~~~-~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~  337 (412)
                      |+|+.....  ....+..+.|.+|.|||.+. ...||.+.||||.|||+.||++|+.-|.....+.+        ...++
T Consensus       170 GLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~  249 (359)
T KOG0660|consen  170 GLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSE  249 (359)
T ss_pred             cceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCH
Confidence            999987543  22335567899999999875 56799999999999999999999987753221100        11111


Q ss_pred             chh--------hHHhhhccCC---ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          338 IML--------IDILYQRLSP---PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       338 ~~~--------~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      ..+        ...+......   +.............+|+.+|+..||.+|+|++|.+++-
T Consensus       250 e~l~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~hP  311 (359)
T KOG0660|consen  250 EDLQKIRSEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAHP  311 (359)
T ss_pred             HHHHHhccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcCh
Confidence            111        1111111111   11111112234588999999999999999999998763

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=4.4e-36  Score=285.42  Aligned_cols=229  Identities=24%  Similarity=0.337  Sum_probs=181.1

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEec
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      .+|+..+.||.|+||.||+|.. .+++.||+|.+                     +|+++......+...+..++|+||+
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   98 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYL   98 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEec
Confidence            4688999999999999999975 57899999965                     4556666666677788999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++++|..++...    .+++.++..++.|++.||+|||+.   +++||||||+||+++.++.++|+|||++.........
T Consensus        99 ~~~~L~~~~~~~----~l~~~~~~~i~~~l~~al~~LH~~---~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~  171 (296)
T cd06655          99 AGGSLTDVVTET----CMDEAQIAAVCRECLQALEFLHAN---QVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSK  171 (296)
T ss_pred             CCCcHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccchhccccccc
Confidence            999999888643    489999999999999999999998   9999999999999999999999999998866544333


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      .....++..|+|||.+.+..++.++|||||||++||+++|+.||....       +........... .+.. .......
T Consensus       172 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~-------~~~~~~~~~~~~-~~~~-~~~~~~~  242 (296)
T cd06655         172 RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNEN-------PLRALYLIATNG-TPEL-QNPEKLS  242 (296)
T ss_pred             CCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-------HHHHHHHHHhcC-Cccc-CCcccCC
Confidence            344568899999999988889999999999999999999999986321       111111111111 1100 0111122


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..+.+++.+||..||++||++.+++++
T Consensus       243 ~~~~~li~~~l~~dp~~Rpt~~~il~~  269 (296)
T cd06655         243 PIFRDFLNRCLEMDVEKRGSAKELLQH  269 (296)
T ss_pred             HHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence            347789999999999999999999865

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=1.2e-36  Score=297.25  Aligned_cols=228  Identities=21%  Similarity=0.302  Sum_probs=172.9

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc------------------------CCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|+..+.||+|+||.||++... +++.||+|.++                        |+++......+...+..++||
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            46888999999999999999774 68999999763                        344444555577788999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++....   .+++.....++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        81 E~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~~L~~lH~~---givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~  154 (360)
T cd05627          81 EFLPGGDMMTLLMKKD---TLSEEATQFYIAETVLAIDAIHQL---GFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKA  154 (360)
T ss_pred             eCCCCccHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEeeccCCcccccc
Confidence            9999999999887543   488999999999999999999998   9999999999999999999999999998754221


Q ss_pred             CC-----------------------------------CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCC
Q 042435          278 SS-----------------------------------NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTH  322 (412)
Q Consensus       278 ~~-----------------------------------~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~  322 (412)
                      ..                                   ......||+.|+|||++.+..++.++|||||||++|||+||+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~  234 (360)
T cd05627         155 HRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYP  234 (360)
T ss_pred             cccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCC
Confidence            00                                   0113469999999999999999999999999999999999999


Q ss_pred             CcccccccccCCCCcchhhHHhh--hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCC---HHHHHHH
Q 042435          323 PGELLLSLSSSSGPKIMLIDILY--QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPT---MQRISQE  387 (412)
Q Consensus       323 P~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs---~~evl~~  387 (412)
                      ||...       ........+..  ..+..+....   ....+.+++.+++. ||.+|++   +.|++++
T Consensus       235 Pf~~~-------~~~~~~~~i~~~~~~~~~p~~~~---~s~~~~~li~~l~~-~p~~R~~~~~~~ei~~h  293 (360)
T cd05627         235 PFCSE-------TPQETYRKVMNWKETLVFPPEVP---ISEKAKDLILRFCT-DSENRIGSNGVEEIKSH  293 (360)
T ss_pred             CCCCC-------CHHHHHHHHHcCCCceecCCCCC---CCHHHHHHHHHhcc-ChhhcCCCCCHHHHhcC
Confidence            98632       11111122221  1111110001   11235667777664 9999985   6777665

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=3.2e-36  Score=284.77  Aligned_cols=230  Identities=20%  Similarity=0.267  Sum_probs=174.1

Q ss_pred             cccceeeeecCceEEEEEEe-CCCcEEEEEeccC------------------------CccccceEEEecCceEEEEEEe
Q 042435          145 FHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHH------------------------SETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~------------------------~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      |+..+.||+|+||.||++.. .+++.||+|.+..                        +++......+...+..++||||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            67788999999999999976 4689999997632                        2233333345667889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++|+|.+++..... ..+++.++..++.|++.||.|||+.   +++||||||+||++++++.++|+|||++....... 
T Consensus        82 ~~g~~L~~~l~~~~~-~~l~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~-  156 (285)
T cd05630          82 MNGGDLKFHIYHMGE-AGFEEGRAVFYAAEICCGLEDLHQE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQ-  156 (285)
T ss_pred             cCCCcHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeccceeecCCCc-
Confidence            999999988754322 2488999999999999999999988   99999999999999999999999999987654322 


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      ......|+..|+|||++.+..++.++||||||+++|||++|+.||......    ............ ........   .
T Consensus       157 ~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~----~~~~~~~~~~~~-~~~~~~~~---~  228 (285)
T cd05630         157 TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKK----IKREEVERLVKE-VQEEYSEK---F  228 (285)
T ss_pred             cccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCcc----chHHHHHhhhhh-hhhhcCcc---C
Confidence            122346899999999999889999999999999999999999999732100    000011111110 11111111   1


Q ss_pred             HHHHHHHHHhcCcCCCCCCCC-----HHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRPT-----MQRISQE  387 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  387 (412)
                      ...+.+++.+||+.||++|||     ++|++++
T Consensus       229 ~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~h  261 (285)
T cd05630         229 SPDARSLCKMLLCKDPKERLGCQGGGAREVKEH  261 (285)
T ss_pred             CHHHHHHHHHHhhcCHHHccCCCCCchHHHHcC
Confidence            223778999999999999999     8888874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=6.1e-36  Score=286.74  Aligned_cols=238  Identities=22%  Similarity=0.320  Sum_probs=181.8

Q ss_pred             hcCcccceeeeecCceEEEEEEeC--------CCcEEEEEecc-----------------------CCccccceEEEecC
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP--------DGKVVALKKLH-----------------------HSETEDSAFVVYSP  190 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~--------~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~  190 (412)
                      .++|.+.+.||+|+||.||+|...        ....+|+|.++                       |+++......+...
T Consensus        11 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~   90 (314)
T cd05099          11 RDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQE   90 (314)
T ss_pred             HHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccC
Confidence            357888999999999999999642        24578998643                       55555555667777


Q ss_pred             ceEEEEEEeccCCceeeeeccCcc-------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDE-------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL  257 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl  257 (412)
                      ...+++|||+++|+|.+++.....             ...++|.++..++.|++.||+|||++   +++||||||+||++
T Consensus        91 ~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp~Nill  167 (314)
T cd05099          91 GPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESR---RCIHRDLAARNVLV  167 (314)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHC---CeeeccccceeEEE
Confidence            889999999999999998865321             12489999999999999999999998   99999999999999


Q ss_pred             cCCCcEEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCC
Q 042435          258 NSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSS  334 (412)
Q Consensus       258 ~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~  334 (412)
                      +.++.+||+|||+++........  .....++..|+|||.+.+..++.++||||||+++|||++ |..||...       
T Consensus       168 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~-------  240 (314)
T cd05099         168 TEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGI-------  240 (314)
T ss_pred             cCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCC-------
Confidence            99999999999999865432211  112234567999999988889999999999999999999 88887622       


Q ss_pred             CCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          335 GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                       ......+..........+.   .....+.+++.+||+.||++|||+.|+++.|+++..
T Consensus       241 -~~~~~~~~~~~~~~~~~~~---~~~~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~  295 (314)
T cd05099         241 -PVEELFKLLREGHRMDKPS---NCTHELYMLMRECWHAVPTQRPTFKQLVEALDKVLA  295 (314)
T ss_pred             -CHHHHHHHHHcCCCCCCCC---CCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHH
Confidence             1111122222211111111   112247789999999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=4.4e-36  Score=278.38  Aligned_cols=232  Identities=26%  Similarity=0.356  Sum_probs=182.6

Q ss_pred             hcCcccceeeeecCceEEEEEEeCC-CcEEEEEec-------------------cCCccccceEEEecCceEEEEEEecc
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPD-GKVVALKKL-------------------HHSETEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~-~~~vAvK~l-------------------~~~~~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      .++|+..+.||+|+||.||+|...+ ++.+|+|.+                   +|+++......+......++++||++
T Consensus         2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~   81 (256)
T cd06612           2 EEVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCG   81 (256)
T ss_pred             cccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCC
Confidence            3678999999999999999998864 889999965                   45566666666778889999999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCc
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR  281 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~  281 (412)
                      +++|.+++....  ..+++.....++.|++.||.|||+.   +++|+||+|+||++++++.++|+|||++..........
T Consensus        82 ~~~L~~~l~~~~--~~l~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~  156 (256)
T cd06612          82 AGSVSDIMKITN--KTLTEEEIAAILYQTLKGLEYLHSN---KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKR  156 (256)
T ss_pred             CCcHHHHHHhCc--cCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEECCCCcEEEcccccchhcccCcccc
Confidence            999999886533  2589999999999999999999998   99999999999999999999999999998765443333


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDII  361 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (412)
                      ....++..|+|||++.+..++.++||||||+++|||++|+.||.....       ...... ........ .........
T Consensus       157 ~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~-------~~~~~~-~~~~~~~~-~~~~~~~~~  227 (256)
T cd06612         157 NTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHP-------MRAIFM-IPNKPPPT-LSDPEKWSP  227 (256)
T ss_pred             ccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcch-------hhhhhh-hccCCCCC-CCchhhcCH
Confidence            345578899999999888999999999999999999999999873211       010111 11111111 011111223


Q ss_pred             HHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          362 LVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       362 ~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .+.+++.+||+.||++|||+.|++++
T Consensus       228 ~~~~~i~~~l~~~P~~Rps~~~il~~  253 (256)
T cd06612         228 EFNDFVKKCLVKDPEERPSAIQLLQH  253 (256)
T ss_pred             HHHHHHHHHHhcChhhCcCHHHHhcC
Confidence            47889999999999999999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=4.8e-36  Score=284.79  Aligned_cols=235  Identities=22%  Similarity=0.294  Sum_probs=175.9

Q ss_pred             cCcccceeeeecCceEEEEEEeCC---------------CcEEEEEec----------------------cCCccccceE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPD---------------GKVVALKKL----------------------HHSETEDSAF  185 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~---------------~~~vAvK~l----------------------~~~~~~~~~~  185 (412)
                      ++|++.+.||+|+||.||++...+               ...||+|.+                      +|+++.....
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            578899999999999999986532               235899965                      3455555556


Q ss_pred             EEecCceEEEEEEeccCCceeeeeccCc---------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEE
Q 042435          186 VVYSPQCMFFIYEYMERGSLFCVLRDDD---------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNIL  256 (412)
Q Consensus       186 ~~~~~~~~~lv~ey~~~gsL~~~l~~~~---------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NIL  256 (412)
                      .+...+..++||||+++++|.+++....         ....++|..++.++.|++.||+|||+.   +++||||||+||+
T Consensus        85 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~Nil  161 (295)
T cd05097          85 VCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASL---NFVHRDLATRNCL  161 (295)
T ss_pred             EEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhc---CeeccccChhhEE
Confidence            6777888999999999999998885432         112478999999999999999999998   9999999999999


Q ss_pred             ecCCCcEEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh--CCCCccccccccc
Q 042435          257 LNSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM--GTHPGELLLSLSS  332 (412)
Q Consensus       257 l~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt--g~~P~~~~~~~~~  332 (412)
                      +++++.+||+|||+++........  .....++..|+|||+..+..++.++|||||||++|||++  |..||....    
T Consensus       162 l~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~----  237 (295)
T cd05097         162 VGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLS----  237 (295)
T ss_pred             EcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccC----
Confidence            999999999999999765332211  122345678999999988889999999999999999998  566765221    


Q ss_pred             CCCCcchhhHH---hhh---ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          333 SSGPKIMLIDI---LYQ---RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       333 ~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                         ........   ...   ........   .....+.+++.+||+.||++|||+++|++.|+.
T Consensus       238 ---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~~  295 (295)
T cd05097         238 ---DEQVIENTGEFFRNQGRQIYLSQTP---LCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLRE  295 (295)
T ss_pred             ---hHHHHHHHHHhhhhccccccCCCCC---CCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhC
Confidence               00101110   000   00000001   112348899999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=6.3e-36  Score=299.10  Aligned_cols=239  Identities=20%  Similarity=0.199  Sum_probs=180.1

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEe---------------ccCCccccceEEEecCceEEEEEEeccCCcee
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKK---------------LHHSETEDSAFVVYSPQCMFFIYEYMERGSLF  206 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~---------------l~~~~~~~~~~~~~~~~~~~lv~ey~~~gsL~  206 (412)
                      .+|.+.+.||+|+||.||+|... .++.||||.               ++|+++......+...+..++||||+. ++|.
T Consensus       169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~-~~L~  247 (461)
T PHA03211        169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWYASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYR-SDLY  247 (461)
T ss_pred             CCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccC-CCHH
Confidence            46999999999999999999775 578999994               578999988888888899999999995 6888


Q ss_pred             eeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC--cccc
Q 042435          207 CVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN--RTLQ  284 (412)
Q Consensus       207 ~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~--~~~~  284 (412)
                      +++....  ..++|.+++.++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++........  ....
T Consensus       248 ~~l~~~~--~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~  322 (461)
T PHA03211        248 TYLGARL--RPLGLAQVTAVARQLLSAIDYIHGE---GIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGI  322 (461)
T ss_pred             HHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CEEECcCCHHHEEECCCCCEEEcccCCceeccccccccccccc
Confidence            8776432  2589999999999999999999998   9999999999999999999999999999865433221  2235


Q ss_pred             cccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhcc----------------
Q 042435          285 AGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRL----------------  348 (412)
Q Consensus       285 ~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~----------------  348 (412)
                      .||..|+|||++.+..++.++|||||||++|||++|..|+...............+..++....                
T Consensus       323 ~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~  402 (461)
T PHA03211        323 AGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVS  402 (461)
T ss_pred             CCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHH
Confidence            6999999999999999999999999999999999987654211000000000001111111000                


Q ss_pred             ----------CCccc-hhh---HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          349 ----------SPPIN-QKI---IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       349 ----------~~~~~-~~~---~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                                .+... ..+   ......+.+++.+||+.||++|||+.|++++
T Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~h  455 (461)
T PHA03211        403 QYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRL  455 (461)
T ss_pred             HHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcCHHHHhhC
Confidence                      00000 000   0111247789999999999999999999976

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-36  Score=306.69  Aligned_cols=238  Identities=22%  Similarity=0.278  Sum_probs=185.8

Q ss_pred             hcCcccceeeeecCceEEEEEEeCCC-cEEEEEec----------------------cCCccccceEE----Eec---Cc
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPDG-KVVALKKL----------------------HHSETEDSAFV----VYS---PQ  191 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~~-~~vAvK~l----------------------~~~~~~~~~~~----~~~---~~  191 (412)
                      ..+.++.++|.+|||+.||.|....+ ..+|+|++                      .|+|++.....    ...   .-
T Consensus        36 ~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~  115 (738)
T KOG1989|consen   36 SHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVW  115 (738)
T ss_pred             CEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCcee
Confidence            34567889999999999999988665 99999986                      26666655441    111   24


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                      +++|.||||++|+|-+++..+... .|+..++++|+.|+++|+++||.. .++|||||||-+||||+.+++.||||||.|
T Consensus       116 EvllLmEyC~gg~Lvd~mn~Rlq~-~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFGSa  193 (738)
T KOG1989|consen  116 EVLLLMEYCKGGSLVDFMNTRLQT-RLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFGSA  193 (738)
T ss_pred             EEEeehhhccCCcHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCccccc
Confidence            678999999999999999865433 399999999999999999999986 788999999999999999999999999998


Q ss_pred             cccCCCCCCc---------cccccccccccccccc---CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcch
Q 042435          272 RLLDVDSSNR---------TLQAGTYGYIALELVY---TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIM  339 (412)
Q Consensus       272 ~~~~~~~~~~---------~~~~gt~~y~aPE~~~---~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~  339 (412)
                      ..........         .....|+.|+|||++.   +..+++|+|||+|||+||-|+....||+..-           
T Consensus       194 tt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg-----------  262 (738)
T KOG1989|consen  194 TTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESG-----------  262 (738)
T ss_pred             ccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCc-----------
Confidence            6432222110         1234689999999874   6779999999999999999999999998321           


Q ss_pred             hhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCC
Q 042435          340 LIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMK  395 (412)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  395 (412)
                      ...++......|..+   .....+.+||..||+.||.+||++-+|+..+.++....
T Consensus       263 ~laIlng~Y~~P~~p---~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~~  315 (738)
T KOG1989|consen  263 KLAILNGNYSFPPFP---NYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELANKP  315 (738)
T ss_pred             ceeEEeccccCCCCc---cHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhcCC
Confidence            122333333333222   23344889999999999999999999999998876544

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=5e-36  Score=294.19  Aligned_cols=237  Identities=23%  Similarity=0.262  Sum_probs=172.6

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEecCc-----eEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVYSPQ-----CMF  194 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~-----~~~  194 (412)
                      +|++.+.||+|+||.||++.. .+|+.||+|++.                       |+++......+...+     ..+
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            478889999999999999976 579999999753                       445554444555544     789


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      +|+||+. ++|.+++....   .+++..+..++.|++.||+|||+.   +++||||||+|||++.++.+||+|||+++..
T Consensus        81 lv~e~~~-~~l~~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~  153 (372)
T cd07853          81 VVTELMQ-SDLHKIIVSPQ---PLSSDHVKVFLYQILRGLKYLHSA---GILHRDIKPGNLLVNSNCVLKICDFGLARVE  153 (372)
T ss_pred             EEeeccc-cCHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHHEEECCCCCEEeccccceeec
Confidence            9999996 57777665433   589999999999999999999998   9999999999999999999999999999865


Q ss_pred             CCCCC-CcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcch-----
Q 042435          275 DVDSS-NRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKIM-----  339 (412)
Q Consensus       275 ~~~~~-~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~~-----  339 (412)
                      ..... ......++..|+|||.+.+. .++.++|||||||++|||++|+.||........        .......     
T Consensus       154 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~  233 (372)
T cd07853         154 EPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSAC  233 (372)
T ss_pred             ccCccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhh
Confidence            43322 22334678999999998764 478999999999999999999999963211000        0000000     


Q ss_pred             --hhHHhhh-ccCCccchh----hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          340 --LIDILYQ-RLSPPINQK----IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       340 --~~~~~~~-~~~~~~~~~----~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                        ....+.. ...++....    .......+.+++.+||+.||++|||+.|++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h  288 (372)
T cd07853         234 EGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAH  288 (372)
T ss_pred             HHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcC
Confidence              0000000 011100000    00112347889999999999999999999976

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=5.4e-36  Score=283.28  Aligned_cols=235  Identities=23%  Similarity=0.353  Sum_probs=179.9

Q ss_pred             hcCcccceeeeecCceEEEEEEeC------CCcEEEEEecc----------------------CCccccceEEEecCceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKLH----------------------HSETEDSAFVVYSPQCM  193 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~  193 (412)
                      .++|++.+.||+|+||.||+|...      ++..||+|.++                      |+++......+..++..
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~   83 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPM   83 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCcc
Confidence            467899999999999999999763      46789999753                      45555555667777889


Q ss_pred             EEEEEeccCCceeeeeccCc-------------------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCC
Q 042435          194 FFIYEYMERGSLFCVLRDDD-------------------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNN  254 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~-------------------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~N  254 (412)
                      ++++||+++|+|.+++....                   ....+++.+++.++.|++.||+|||+.   +++||||||+|
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~---~i~H~dl~p~n  160 (288)
T cd05050          84 CLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER---KFVHRDLATRN  160 (288)
T ss_pred             EEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CeecccccHhh
Confidence            99999999999998886421                   112478899999999999999999998   99999999999


Q ss_pred             EEecCCCcEEEeecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccc
Q 042435          255 ILLNSNLEAFVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLS  331 (412)
Q Consensus       255 ILl~~~~~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~  331 (412)
                      |++++++.++|+|||+++.......  .......+..|+|||...+..++.++|||||||++|||++ |..||...    
T Consensus       161 il~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~----  236 (288)
T cd05050         161 CLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGM----  236 (288)
T ss_pred             eEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCC----
Confidence            9999999999999999875433221  1122234677999999988899999999999999999998 88887522    


Q ss_pred             cCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          332 SSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                         ........+...... +.+.   .....+.+++.+||+.||++|||+.|+++.|++
T Consensus       237 ---~~~~~~~~~~~~~~~-~~~~---~~~~~l~~li~~~l~~~p~~Rpt~~el~~~l~~  288 (288)
T cd05050         237 ---AHEEVIYYVRDGNVL-SCPD---NCPLELYNLMRLCWSKLPSDRPSFASINRILQR  288 (288)
T ss_pred             ---CHHHHHHHHhcCCCC-CCCC---CCCHHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence               111111111111111 1111   122348899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=7.7e-36  Score=277.02  Aligned_cols=231  Identities=21%  Similarity=0.325  Sum_probs=178.1

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEecc--------------------CCccccceEEEecCceEEEEEEeccC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLH--------------------HSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~--------------------~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      .+|++.+.||+|+||.||+|.+.++..+|+|.++                    |+++......+......++||||+++
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~   83 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEH   83 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCC
Confidence            4678889999999999999988778899999764                    33444444556667788999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC-c
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-R  281 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~-~  281 (412)
                      ++|.+++.....  .+++..+..++.+++.|++|||+.   +++||||||+||+++.++.++|+|||+++........ .
T Consensus        84 ~~L~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~  158 (256)
T cd05112          84 GCLSDYLRAQRG--KFSQETLLGMCLDVCEGMAYLESS---NVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSS  158 (256)
T ss_pred             CcHHHHHHhCcc--CCCHHHHHHHHHHHHHHHHHHHHC---CccccccccceEEEcCCCeEEECCCcceeecccCccccc
Confidence            999988865432  478999999999999999999998   9999999999999999999999999998755332111 1


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ....++..|+|||.+.+..++.++||||||+++|||++ |+.||....        .....+.+........+..   ..
T Consensus       159 ~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~---~~  227 (256)
T cd05112         159 TGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRS--------NSEVVETINAGFRLYKPRL---AS  227 (256)
T ss_pred             CCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCC--------HHHHHHHHhCCCCCCCCCC---CC
Confidence            22235678999999988889999999999999999998 999986211        1111111111111111111   12


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                      ..+.+++.+||+.+|++|||+.|+++.|.
T Consensus       228 ~~~~~l~~~~l~~~p~~Rp~~~~~l~~l~  256 (256)
T cd05112         228 QSVYELMQHCWKERPEDRPSFSLLLHQLA  256 (256)
T ss_pred             HHHHHHHHHHcccChhhCCCHHHHHHhhC
Confidence            34889999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=3.6e-36  Score=286.08  Aligned_cols=230  Identities=24%  Similarity=0.323  Sum_probs=181.1

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEe
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ..+|++.+.||+|+||.||+|.. .+++.||+|.+                     +|+++......+...+..++||||
T Consensus        18 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   97 (297)
T cd06656          18 KKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   97 (297)
T ss_pred             hhhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecc
Confidence            36788999999999999999976 57999999965                     355555566667778899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++++|.+++...    .+++.++..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++........
T Consensus        98 ~~~~~L~~~~~~~----~~~~~~~~~~~~~l~~~L~~LH~~---~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~  170 (297)
T cd06656          98 LAGGSLTDVVTET----CMDEGQIAAVCRECLQALDFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS  170 (297)
T ss_pred             cCCCCHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEECcCccceEccCCcc
Confidence            9999999988653    378999999999999999999998   999999999999999999999999999886554433


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      ......+++.|+|||.+.+..++.++|+|||||++|++++|+.||......       .......... .+. .......
T Consensus       171 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~-------~~~~~~~~~~-~~~-~~~~~~~  241 (297)
T cd06656         171 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPL-------RALYLIATNG-TPE-LQNPERL  241 (297)
T ss_pred             CcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcc-------hheeeeccCC-CCC-CCCcccc
Confidence            334456889999999999888999999999999999999999998632110       0000000000 000 0011111


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+.+++.+||+.||++||++++++++
T Consensus       242 ~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (297)
T cd06656         242 SAVFRDFLNRCLEMDVDRRGSAKELLQH  269 (297)
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            2337789999999999999999999983

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=9.4e-36  Score=276.47  Aligned_cols=229  Identities=22%  Similarity=0.349  Sum_probs=176.2

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEe-cCceEEEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVY-SPQCMFFIYE  198 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~-~~~~~~lv~e  198 (412)
                      +|++.+.||+|++|.||++... +++.||+|++.                       |+++......+. .....+++||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            4888999999999999999764 57899999763                       333333322233 2345789999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++++|.+++..... ..+++.++..++.+++.|++|||+.   +++||||||+||+++.++.++|+|||+++......
T Consensus        81 ~~~~~~l~~~l~~~~~-~~l~~~~~~~~~~~l~~~l~~lH~~---~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~  156 (257)
T cd08223          81 FCEGGDLYHKLKEQKG-KLLPENQVVEWFVQIAMALQYLHEK---HILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQC  156 (257)
T ss_pred             ccCCCcHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCchhEEEecCCcEEEecccceEEecccC
Confidence            9999999998875422 2489999999999999999999998   99999999999999999999999999998764433


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      .......+++.|+|||+..+..++.++||||||++++|+++|+.||...       .............. ++.+.   .
T Consensus       157 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~-------~~~~~~~~~~~~~~-~~~~~---~  225 (257)
T cd08223         157 DMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAK-------DMNSLVYRIIEGKL-PPMPK---D  225 (257)
T ss_pred             CccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCC-------CHHHHHHHHHhcCC-CCCcc---c
Confidence            3334456889999999999989999999999999999999999998621       11111111111111 11111   1


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+.+++.+||+.||++|||+.+++++
T Consensus       226 ~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  254 (257)
T cd08223         226 YSPELGELIATMLSKRPEKRPSVKSILRQ  254 (257)
T ss_pred             cCHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence            22348899999999999999999999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=1.1e-35  Score=275.97  Aligned_cols=227  Identities=26%  Similarity=0.405  Sum_probs=177.3

Q ss_pred             eeeeecCceEEEEEEeCC----CcEEEEEecc----------------------CCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAELPD----GKVVALKKLH----------------------HSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~----~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      +.||+|+||.||+|....    +..||+|.++                      |+++......+......++||||+++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            368999999999998754    7889999764                      34444444556677889999999999


Q ss_pred             CceeeeeccCcc------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          203 GSLFCVLRDDDE------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       203 gsL~~~l~~~~~------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      ++|.+++.....      ...+++..+..++.|++.||+|||++   +++||||||+||++++++.++|+|||.+.....
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~  157 (262)
T cd00192          81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK---KFVHRDLAARNCLVGEDLVVKISDFGLSRDVYD  157 (262)
T ss_pred             CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcC---CcccCccCcceEEECCCCcEEEccccccccccc
Confidence            999999877521      13689999999999999999999998   999999999999999999999999999987654


Q ss_pred             CC--CCcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccc
Q 042435          277 DS--SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN  353 (412)
Q Consensus       277 ~~--~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (412)
                      ..  .......++..|+|||.+....++.++||||+|+++|||++ |..||...        ......+.+........+
T Consensus       158 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~--------~~~~~~~~~~~~~~~~~~  229 (262)
T cd00192         158 DDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGL--------SNEEVLEYLRKGYRLPKP  229 (262)
T ss_pred             ccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCC--------CHHHHHHHHHcCCCCCCC
Confidence            32  12233457889999999988889999999999999999999 69998732        111112222211111111


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                      ..   ....+.+++.+||..||++|||+.|++++|+
T Consensus       230 ~~---~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         230 EY---CPDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             cc---CChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence            11   1234889999999999999999999999874

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=6.1e-36  Score=292.17  Aligned_cols=238  Identities=22%  Similarity=0.215  Sum_probs=171.9

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEecC------
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVYSP------  190 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~------  190 (412)
                      ..++|++.+.||+|+||.||++.. .+|+.||+|.+.                       |+++.....++...      
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   98 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF   98 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence            457899999999999999999976 468999999763                       34444444433322      


Q ss_pred             ceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCC
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGT  270 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGl  270 (412)
                      ...++||||+++ +|.+.+..     .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+
T Consensus        99 ~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~~~~qi~~~L~~LH~~---~ivHrDlkp~NIl~~~~~~~kl~Dfg~  169 (359)
T cd07876          99 QDVYLVMELMDA-NLCQVIHM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGL  169 (359)
T ss_pred             ceeEEEEeCCCc-CHHHHHhc-----cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEecCCC
Confidence            357999999975 56555432     378888999999999999999998   999999999999999999999999999


Q ss_pred             ccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccc-------cCCCCcch----
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS-------SSSGPKIM----  339 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~-------~~~~~~~~----  339 (412)
                      ++...... ......||+.|+|||++.+..++.++|||||||++|||+||+.||.......       ....+...    
T Consensus       170 a~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (359)
T cd07876         170 ARTACTNF-MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNR  248 (359)
T ss_pred             ccccccCc-cCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHH
Confidence            97543322 2233468999999999999999999999999999999999999996321100       00000000    


Q ss_pred             ----hhHHhhhccCCcc---------------chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          340 ----LIDILYQRLSPPI---------------NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       340 ----~~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                          ...........+.               ..........+.+++.+||+.||++|||+.|++++-
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp  316 (359)
T cd07876         249 LQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRHP  316 (359)
T ss_pred             HHHHHHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcCc
Confidence                0000000000000               000000123478999999999999999999999863

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=3.8e-36  Score=283.52  Aligned_cols=240  Identities=18%  Similarity=0.202  Sum_probs=175.0

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEEe
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +|++.+.||+|++|.||+|... +++.||+|+++                       |+++......+..++..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            4788899999999999999774 68999999753                       44555555567778899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      ++ ++|.+++........+++..+..++.|++.||+|||+.   +++||||||+||+++.++.++|+|||+++.......
T Consensus        81 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~  156 (285)
T cd07861          81 LS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSR---RVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVR  156 (285)
T ss_pred             CC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEEcCCCcEEECcccceeecCCCcc
Confidence            97 68887776543334689999999999999999999998   999999999999999999999999999876543333


Q ss_pred             CcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccc----------cC---CCCcchhhHHhh
Q 042435          280 NRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLS----------SS---SGPKIMLIDILY  345 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~----------~~---~~~~~~~~~~~~  345 (412)
                      ......+++.|+|||.+.+. .++.++||||||+++|||+||+.||.......          ..   ..+.........
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (285)
T cd07861         157 VYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYK  236 (285)
T ss_pred             cccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHH
Confidence            33344678899999988654 57889999999999999999999986321100          00   000000000000


Q ss_pred             hccCC----ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 QRLSP----PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ~~~~~----~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .....    ............+.+++.+||+.||++|||+.+++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~~  282 (285)
T cd07861         237 NTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALNH  282 (285)
T ss_pred             hhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhcC
Confidence            00000    0000000012346789999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=5.3e-36  Score=284.27  Aligned_cols=236  Identities=24%  Similarity=0.301  Sum_probs=178.3

Q ss_pred             hcCcccceeeeecCceEEEEEEeCC-----------------CcEEEEEecc----------------------CCcccc
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPD-----------------GKVVALKKLH----------------------HSETED  182 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~-----------------~~~vAvK~l~----------------------~~~~~~  182 (412)
                      .++|++.+.||+|+||.||+|...+                 +..||+|.+.                      |+++..
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~   83 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR   83 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence            3578899999999999999997642                 3468999753                      445555


Q ss_pred             ceEEEecCceEEEEEEeccCCceeeeeccCcc--------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCC
Q 042435          183 SAFVVYSPQCMFFIYEYMERGSLFCVLRDDDE--------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNN  254 (412)
Q Consensus       183 ~~~~~~~~~~~~lv~ey~~~gsL~~~l~~~~~--------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~N  254 (412)
                      ....+..++..++++||+++++|.+++.....        ...+++..++.++.|++.||+|||++   +++||||||+|
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~---~i~H~dlkp~N  160 (296)
T cd05051          84 LLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL---NFVHRDLATRN  160 (296)
T ss_pred             EEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHc---Cccccccchhc
Confidence            55556777889999999999999998865431        12589999999999999999999998   99999999999


Q ss_pred             EEecCCCcEEEeecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh--CCCCccccccc
Q 042435          255 ILLNSNLEAFVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM--GTHPGELLLSL  330 (412)
Q Consensus       255 ILl~~~~~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt--g~~P~~~~~~~  330 (412)
                      |+++.++.++|+|||+++.......  ......+++.|+|||++.+..++.++|||||||++|||++  |..||....  
T Consensus       161 ili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~--  238 (296)
T cd05051         161 CLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLT--  238 (296)
T ss_pred             eeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcC--
Confidence            9999999999999999876533221  1233456788999999988889999999999999999998  667765221  


Q ss_pred             ccCCCCcchhhHHhhh------ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          331 SSSSGPKIMLIDILYQ------RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       331 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                           ....+......      ....+.+.   .....+.+++.+||+.||++|||+.|+++.|+.
T Consensus       239 -----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~~  296 (296)
T cd05051         239 -----DQQVIENAGHFFRDDGRQIYLPRPP---NCPKDIYELMLECWRRDEEDRPTFREIHLFLQR  296 (296)
T ss_pred             -----hHHHHHHHHhccccccccccCCCcc---CCCHHHHHHHHHHhccChhcCCCHHHHHHHhcC
Confidence                 11111111100      00001011   112348899999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.1e-35  Score=276.50  Aligned_cols=226  Identities=24%  Similarity=0.332  Sum_probs=172.7

Q ss_pred             eeeeecCceEEEEEEeCC----CcEEEEEecc----------------------CCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAELPD----GKVVALKKLH----------------------HSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~----~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++||+|+||.||+|.+..    +..+|+|.++                      |+++......+ ..+..++||||+++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~~~~~v~e~~~~   79 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVC-KGEPLMLVMELAPL   79 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEE-cCCceEEEEEeCCC
Confidence            369999999999996532    3689999764                      33333333333 45668999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCc-
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR-  281 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~-  281 (412)
                      |+|.+++....   .+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++......... 
T Consensus        80 ~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~  153 (257)
T cd05060          80 GPLLKYLKKRR---EIPVSDLKELAHQVAMGMAYLESK---HFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYR  153 (257)
T ss_pred             CcHHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHhhc---CeeccCcccceEEEcCCCcEEeccccccceeecCCcccc
Confidence            99999997654   589999999999999999999988   99999999999999999999999999998664433221 


Q ss_pred             --ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          282 --TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       282 --~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                        ....++..|+|||...+..++.++||||||+++||+++ |..||....        .......+......+.+..   
T Consensus       154 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~---  222 (257)
T cd05060         154 ATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMK--------GAEVIAMLESGERLPRPEE---  222 (257)
T ss_pred             cccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCC--------HHHHHHHHHcCCcCCCCCC---
Confidence              11223567999999998889999999999999999998 999986321        1112222222211111111   


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ....+.+++.+||..+|++||++.++++.|++..
T Consensus       223 ~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         223 CPQEIYSIMLSCWKYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             CCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence            1234789999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.9e-36  Score=280.87  Aligned_cols=228  Identities=29%  Similarity=0.411  Sum_probs=181.9

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ++|++.+.||.|+||.||+|... +++.||+|.+                      +|+++......+..+...++|+||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEY   80 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEe
Confidence            36788899999999999999764 6889999965                      345555555556777889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++++|.+++...    .+++..+..++.|++.||.|||+.   +++||||+|+||++++++.++|+|||+++.......
T Consensus        81 ~~~~~L~~~~~~~----~~~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~  153 (274)
T cd06609          81 CGGGSCLDLLKPG----KLDETYIAFILREVLLGLEYLHEE---GKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMS  153 (274)
T ss_pred             eCCCcHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEcccccceeeccccc
Confidence            9999999988754    589999999999999999999998   999999999999999999999999999987755433


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      ......++..|+|||.+.+..++.++||||||+++|||+||+.||....       +. .....+.....+.....  ..
T Consensus       154 ~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~-------~~-~~~~~~~~~~~~~~~~~--~~  223 (274)
T cd06609         154 KRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLH-------PM-RVLFLIPKNNPPSLEGN--KF  223 (274)
T ss_pred             ccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCc-------hH-HHHHHhhhcCCCCCccc--cc
Confidence            3444568889999999998889999999999999999999999986321       11 11111112222211111  02


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+.+++.+||..||++|||+++++++
T Consensus       224 ~~~~~~~l~~~l~~~p~~Rpt~~~il~~  251 (274)
T cd06609         224 SKPFKDFVSLCLNKDPKERPSAKELLKH  251 (274)
T ss_pred             CHHHHHHHHHHhhCChhhCcCHHHHhhC
Confidence            2347889999999999999999999875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=8.4e-36  Score=279.44  Aligned_cols=229  Identities=26%  Similarity=0.358  Sum_probs=171.9

Q ss_pred             eeeeecCceEEEEEEeCC-Cc--EEEEEecc-----------------------CCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAELPD-GK--VVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~-~~--~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      +.||+|+||.||+|...+ +.  .+|+|.++                       |+++......+...+..+++|||+++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            368999999999998754 43  46888653                       44555555566777789999999999


Q ss_pred             CceeeeeccCc-------------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          203 GSLFCVLRDDD-------------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       203 gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      |+|.+++....             ....+++.++..++.|++.||+|||+.   +++||||||+||++++++.+|++|||
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nili~~~~~~kl~dfg  157 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAKIADFG  157 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccccceEEEcCCCeEEECCCC
Confidence            99999886532             112478999999999999999999998   99999999999999999999999999


Q ss_pred             CccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhcc
Q 042435          270 TVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRL  348 (412)
Q Consensus       270 la~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~  348 (412)
                      +++...... .......+..|+|||+.....++.++||||||+++|||++ |..||....       . ....+.+....
T Consensus       158 l~~~~~~~~-~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~-------~-~~~~~~~~~~~  228 (270)
T cd05047         158 LSRGQEVYV-KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT-------C-AELYEKLPQGY  228 (270)
T ss_pred             Cccccchhh-hccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccC-------H-HHHHHHHhCCC
Confidence            986322111 1112234567999999988889999999999999999997 999986321       1 11111121211


Q ss_pred             CCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          349 SPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       349 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ..+....   ....+.+++.+||+.||.+|||+.|+++.|+++.
T Consensus       229 ~~~~~~~---~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~~  269 (270)
T cd05047         229 RLEKPLN---CDDEVYDLMRQCWREKPYERPSFAQILVSLNRML  269 (270)
T ss_pred             CCCCCCc---CCHHHHHHHHHHcccChhhCCCHHHHHHHHHHhh
Confidence            1111111   1224789999999999999999999999998763

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=9.5e-36  Score=280.14  Aligned_cols=227  Identities=25%  Similarity=0.357  Sum_probs=180.3

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ..|+..+.||+|+||.||+|... +++.||+|.+                      .|+++......+..++..++||||
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEec
Confidence            34677788999999999999764 5889999964                      355555566667788899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++|+|.+++...    .+++.+...++.|++.||+|||+.   +++|+||+|+||+++.++.++++|||++........
T Consensus        84 ~~~~~L~~~i~~~----~l~~~~~~~~~~~l~~~l~~lh~~---~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~  156 (277)
T cd06640          84 LGGGSALDLLRAG----PFDEFQIATMLKEILKGLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI  156 (277)
T ss_pred             CCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHhC---CccCcCCChhhEEEcCCCCEEEcccccceeccCCcc
Confidence            9999999988653    488899999999999999999998   999999999999999999999999999976654333


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      ......++..|+|||++.+..++.++|+||||+++|||+||+.||.....       . ...........+..   ....
T Consensus       157 ~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~-------~-~~~~~~~~~~~~~~---~~~~  225 (277)
T cd06640         157 KRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHP-------M-RVLFLIPKNNPPTL---TGEF  225 (277)
T ss_pred             ccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcCh-------H-hHhhhhhcCCCCCC---chhh
Confidence            33344678899999999888899999999999999999999999863211       0 01111111111111   1123


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+.+++.+||+.+|++||+++|++++
T Consensus       226 ~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         226 SKPFKEFIDACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             hHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence            3458899999999999999999999877

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=8.9e-36  Score=277.58  Aligned_cols=228  Identities=25%  Similarity=0.326  Sum_probs=169.7

Q ss_pred             eeeeecCceEEEEEEeC----CCcEEEEEec----------------------cCCccccceEEEe-cCceEEEEEEecc
Q 042435          149 YCIGTGGYDSVYKAELP----DGKVVALKKL----------------------HHSETEDSAFVVY-SPQCMFFIYEYME  201 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~----~~~~vAvK~l----------------------~~~~~~~~~~~~~-~~~~~~lv~ey~~  201 (412)
                      +.||+|+||.||+|.+.    +...||+|++                      +|+++......+. .+...++++||++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            36899999999999753    2457999965                      3445544444444 3456899999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC---
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS---  278 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~---  278 (412)
                      +|+|.+++.....  .+++..++.++.|++.||+|||+.   +++||||||+||++++++.+||+|||+++......   
T Consensus        81 ~~~L~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~  155 (262)
T cd05058          81 HGDLRNFIRSETH--NPTVKDLIGFGLQVAKGMEYLASK---KFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYS  155 (262)
T ss_pred             CCCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCccccccccCCccee
Confidence            9999999875432  367888899999999999999998   99999999999999999999999999987543221   


Q ss_pred             -CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCC-CCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          279 -SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGT-HPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       279 -~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~-~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                       .......++..|+|||...+..++.++||||||+++|||++|. .||...        ........+........+...
T Consensus       156 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  227 (262)
T cd05058         156 VHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV--------DSFDITVYLLQGRRLLQPEYC  227 (262)
T ss_pred             ecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCC--------CHHHHHHHHhcCCCCCCCCcC
Confidence             1112334577899999998888999999999999999999954 455421        111112222111111111111


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                         ...+.+++.+||+.+|++||++.|+++.|+++.
T Consensus       228 ---~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~  260 (262)
T cd05058         228 ---PDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIF  260 (262)
T ss_pred             ---CHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHh
Confidence               224789999999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=6.4e-36  Score=284.11  Aligned_cols=238  Identities=22%  Similarity=0.301  Sum_probs=175.9

Q ss_pred             cCcccceeeeecCceEEEEEEeC-----------------CCcEEEEEecc----------------------CCccccc
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-----------------DGKVVALKKLH----------------------HSETEDS  183 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-----------------~~~~vAvK~l~----------------------~~~~~~~  183 (412)
                      ++|++.+.||+|+||.||++...                 ++..||+|.++                      |+++...
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~   84 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL   84 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            56899999999999999998532                 24468998654                      4444445


Q ss_pred             eEEEecCceEEEEEEeccCCceeeeeccCcc--------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCE
Q 042435          184 AFVVYSPQCMFFIYEYMERGSLFCVLRDDDE--------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNI  255 (412)
Q Consensus       184 ~~~~~~~~~~~lv~ey~~~gsL~~~l~~~~~--------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NI  255 (412)
                      ...+...+..+++|||+++|+|.+++.....        ...+++.+...++.|++.||+|||+.   +++||||||+||
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dlkp~Ni  161 (296)
T cd05095          85 LAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSL---NFVHRDLATRNC  161 (296)
T ss_pred             EEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHC---CeecccCChheE
Confidence            5556777889999999999999988865321        12478889999999999999999998   999999999999


Q ss_pred             EecCCCcEEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh--CCCCcccccccc
Q 042435          256 LLNSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM--GTHPGELLLSLS  331 (412)
Q Consensus       256 Ll~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt--g~~P~~~~~~~~  331 (412)
                      +++.++.++|+|||+++.+......  .....+++.|+|||...+..++.++|||||||++|||++  |..||.......
T Consensus       162 li~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~  241 (296)
T cd05095         162 LVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQ  241 (296)
T ss_pred             EEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccChHH
Confidence            9999999999999999865332211  122334678999999888889999999999999999998  778875321000


Q ss_pred             cCCCCcchhhHHhhh---ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          332 SSSGPKIMLIDILYQ---RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       332 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      .    ..........   ....+.+.   .....+.+++.+||+.||++||++.||.+.|++
T Consensus       242 ~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  296 (296)
T cd05095         242 V----IENTGEFFRDQGRQVYLPKPA---LCPDSLYKLMLSCWRRNAKERPSFQEIHATLLE  296 (296)
T ss_pred             H----HHHHHHHHhhccccccCCCCC---CCCHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            0    0000011100   00011111   112347899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=1e-35  Score=282.04  Aligned_cols=231  Identities=24%  Similarity=0.322  Sum_probs=177.2

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEec
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      +.|++.+.||+|+||.||+|... +++.+|+|.+                     +|+++......+......++||||+
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   91 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFC   91 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecC
Confidence            56888999999999999999774 5889999965                     4555555566677788999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++++|..++....  ..+++..+..++.|++.||+|||+.   +++||||||+||+++.++.++|+|||++.........
T Consensus        92 ~~~~l~~~~~~~~--~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~  166 (292)
T cd06644          92 PGGAVDAIMLELD--RGLTEPQIQVICRQMLEALQYLHSM---KIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQR  166 (292)
T ss_pred             CCCcHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHhcC---CeeecCCCcceEEEcCCCCEEEccCccceeccccccc
Confidence            9999988765433  2489999999999999999999998   9999999999999999999999999998754333333


Q ss_pred             ccccccccccccccccc-----CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          281 RTLQAGTYGYIALELVY-----TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~-----~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      .....++..|+|||++.     ...++.++|||||||++|||++|+.||....       ........... ..+.. ..
T Consensus       167 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~-------~~~~~~~~~~~-~~~~~-~~  237 (292)
T cd06644         167 RDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELN-------PMRVLLKIAKS-EPPTL-SQ  237 (292)
T ss_pred             cceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCcccc-------HHHHHHHHhcC-CCccC-CC
Confidence            34456888999999985     3456789999999999999999999986321       11111111111 11110 00


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .......+.+++.+||+.||++||+++|++++
T Consensus       238 ~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  269 (292)
T cd06644         238 PSKWSMEFRDFLKTALDKHPETRPSAAQLLEH  269 (292)
T ss_pred             CcccCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            11122347889999999999999999999864

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=6.9e-36  Score=282.35  Aligned_cols=231  Identities=24%  Similarity=0.277  Sum_probs=170.4

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEecc--------------------------CCccccceEEEec-----Cc
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH--------------------------HSETEDSAFVVYS-----PQ  191 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~--------------------------~~~~~~~~~~~~~-----~~  191 (412)
                      +|++.+.||+|+||.||+|... +++.||+|.++                          |+++.....++..     ..
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            4788899999999999999764 68999999764                          2333333322222     34


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                      ..+++|||+++ +|.+++..... ..+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||++
T Consensus        81 ~~~lv~e~~~~-~l~~~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~kl~dfg~~  155 (288)
T cd07863          81 KVTLVFEHVDQ-DLRTYLDKVPP-PGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGQVKLADFGLA  155 (288)
T ss_pred             eEEEEEccccc-CHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccCcc
Confidence            57999999974 88887765432 2489999999999999999999998   9999999999999999999999999999


Q ss_pred             cccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhh------
Q 042435          272 RLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY------  345 (412)
Q Consensus       272 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~------  345 (412)
                      +...... ......||..|+|||++.+..++.++|||||||++|||++|+.||......       .....+..      
T Consensus       156 ~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~-------~~~~~~~~~~~~~~  227 (288)
T cd07863         156 RIYSCQM-ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEA-------DQLGKIFDLIGLPP  227 (288)
T ss_pred             ccccCcc-cCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHH-------HHHHHHHHHhCCCC
Confidence            8654322 223346789999999999888999999999999999999999998532100       00000000      


Q ss_pred             ------------hccCC----ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 ------------QRLSP----PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ------------~~~~~----~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                                  ....+    +...........+.+++.+|++.||++|||+.|++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~h  285 (288)
T cd07863         228 EDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQH  285 (288)
T ss_pred             hhhCcccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence                        00000    0000001112347899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.5e-37  Score=295.33  Aligned_cols=243  Identities=22%  Similarity=0.288  Sum_probs=197.1

Q ss_pred             HHHHHhhcCcccceeeeecCceEEEEEEeCC-CcEEEEEe--------------------ccCCccccceEEEecCceEE
Q 042435          136 ENLIDATEYFHIRYCIGTGGYDSVYKAELPD-GKVVALKK--------------------LHHSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       136 ~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~-~~~vAvK~--------------------l~~~~~~~~~~~~~~~~~~~  194 (412)
                      +++..-..+....++||-|.||.||.|.|+. .-.||||.                    ++|+|.++..++|.....+|
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFY  339 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFY  339 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeE
Confidence            3443334455667899999999999999964 56788884                    47999999999999999999


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      ||+|||.+|+|.+||++.... .++-...+.++.||+.|++||..+   ++|||||..+|+|+.++..+|++|||+++++
T Consensus       340 IiTEfM~yGNLLdYLRecnr~-ev~avvLlyMAtQIsSaMeYLEkk---nFIHRDLAARNCLVgEnhiVKvADFGLsRlM  415 (1157)
T KOG4278|consen  340 IITEFMCYGNLLDYLRECNRS-EVPAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHIVKVADFGLSRLM  415 (1157)
T ss_pred             EEEecccCccHHHHHHHhchh-hcchhHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhccccccceEEeeccchhhhh
Confidence            999999999999999976543 477778889999999999999998   9999999999999999999999999999998


Q ss_pred             CCCCCCc-ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          275 DVDSSNR-TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       275 ~~~~~~~-~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ..+.... ....-.+.|.|||.+....++.|+|||+|||+|||+.| |..||..+.        .....+.+....+...
T Consensus       416 tgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGid--------lSqVY~LLEkgyRM~~  487 (1157)
T KOG4278|consen  416 TGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGID--------LSQVYGLLEKGYRMDG  487 (1157)
T ss_pred             cCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCcc--------HHHHHHHHhccccccC
Confidence            7654332 22334678999999999999999999999999999998 888875321        1123344444444333


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      ++.   +...+.+|+..||+++|++||++.|+-+.++.+-.
T Consensus       488 PeG---CPpkVYeLMraCW~WsPsDRPsFaeiHqafEtmf~  525 (1157)
T KOG4278|consen  488 PEG---CPPKVYELMRACWNWSPSDRPSFAEIHQAFETMFS  525 (1157)
T ss_pred             CCC---CCHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhc
Confidence            333   34459999999999999999999999999987643

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=8.3e-36  Score=281.15  Aligned_cols=230  Identities=23%  Similarity=0.315  Sum_probs=176.6

Q ss_pred             cccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          145 FHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      |++.+.||+|+||.||+|... ++..+|+|.+                     +|+++......+...+..++|+||+++
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~   86 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAG   86 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCC
Confidence            677788999999999999775 5778898864                     456666666667788899999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      ++|..++....  ..+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+|++|||++...........
T Consensus        87 ~~l~~~~~~~~--~~l~~~~~~~~~~qi~~~L~~LH~~---~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~  161 (282)
T cd06643          87 GAVDAVMLELE--RPLTEPQIRVVCKQTLEALNYLHEN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRD  161 (282)
T ss_pred             CcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEccCCCEEEccccccccccccccccc
Confidence            99988775432  2589999999999999999999998   999999999999999999999999999876543333334


Q ss_pred             ccccccccccccccc-----CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          283 LQAGTYGYIALELVY-----TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~-----~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                      ...++..|+|||++.     +..++.++|||||||++|||++|+.||....       ............ .+.. ....
T Consensus       162 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~-------~~~~~~~~~~~~-~~~~-~~~~  232 (282)
T cd06643         162 SFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELN-------PMRVLLKIAKSE-PPTL-AQPS  232 (282)
T ss_pred             cccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccC-------HHHHHHHHhhcC-CCCC-CCcc
Confidence            456889999999974     3457889999999999999999999986321       111111111111 1100 0001


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      .....+.+++.+||+.||.+||++.+++++-
T Consensus       233 ~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~  263 (282)
T cd06643         233 RWSSEFKDFLKKCLEKNVDARWTTTQLLQHP  263 (282)
T ss_pred             ccCHHHHHHHHHHccCChhhCcCHHHHhcCC
Confidence            1123478999999999999999999998664

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=7.8e-36  Score=281.75  Aligned_cols=241  Identities=20%  Similarity=0.299  Sum_probs=178.1

Q ss_pred             cCcccceeeeecCceEEEEEEe-----CCCcEEEEEecc----------------------CCccccceEEEecC--ceE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-----PDGKVVALKKLH----------------------HSETEDSAFVVYSP--QCM  193 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-----~~~~~vAvK~l~----------------------~~~~~~~~~~~~~~--~~~  193 (412)
                      ..|++.+.||+|+||.||++.+     .++..||+|.++                      |+++......+...  ...
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (284)
T cd05079           4 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI   83 (284)
T ss_pred             hhhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCce
Confidence            3467889999999999999974     357899999764                      33444434444443  568


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ++||||+++++|.+++....  ..++|..+..++.|++.||+|||+.   +++||||||+||+++.++.++|+|||+++.
T Consensus        84 ~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~i~~~i~~aL~~lH~~---gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~  158 (284)
T cd05079          84 KLIMEFLPSGSLKEYLPRNK--NKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKA  158 (284)
T ss_pred             EEEEEccCCCCHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccchheEEEcCCCCEEECCCccccc
Confidence            99999999999999886543  2489999999999999999999998   999999999999999999999999999986


Q ss_pred             cCCCCCC---cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccc----cCCCCcch---hhHH
Q 042435          274 LDVDSSN---RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS----SSSGPKIM---LIDI  343 (412)
Q Consensus       274 ~~~~~~~---~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~----~~~~~~~~---~~~~  343 (412)
                      .......   .....++..|+|||++.+..++.++||||||+++|||+|++.|+.......    ........   ....
T Consensus       159 ~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (284)
T cd05079         159 IETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRV  238 (284)
T ss_pred             cccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHH
Confidence            6433221   123456778999999988889999999999999999999877643211100    00000100   1111


Q ss_pred             hhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          344 LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      .......+....   ....+.+++.+||+.||++|||+.++++.|+++
T Consensus       239 ~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         239 LEEGKRLPRPPN---CPEEVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             HHcCccCCCCCC---CCHHHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            111111111111   223488999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.3e-36  Score=281.55  Aligned_cols=226  Identities=24%  Similarity=0.315  Sum_probs=187.2

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEe------------------------ccCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKK------------------------LHHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~------------------------l~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      .+|++.+.||+|.||+|-+|.. ..|+.||||.                        ++|+++...+.++...+.+.|||
T Consensus        53 HRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivM  132 (668)
T KOG0611|consen   53 HRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVM  132 (668)
T ss_pred             hHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEE
Confidence            4577788999999999999954 7899999994                        36788888888899999999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||..+|.|++|+.+.+   .|+......++.||..|+.|+|.+   +++|||||.+|||+|.++++||+|||++-.+...
T Consensus       133 EYaS~GeLYDYiSer~---~LsErEaRhfFRQIvSAVhYCHkn---rVvHRDLKLENILLD~N~NiKIADFGLSNly~~~  206 (668)
T KOG0611|consen  133 EYASGGELYDYISERG---SLSEREARHFFRQIVSAVHYCHKN---RVVHRDLKLENILLDQNNNIKIADFGLSNLYADK  206 (668)
T ss_pred             EecCCccHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHhhc---cceecccchhheeecCCCCeeeeccchhhhhccc
Confidence            9999999999998765   589999999999999999999999   9999999999999999999999999999876533


Q ss_pred             CCCcccccccccccccccccCcccC-cccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVT-EKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s-~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                       .-..+++|++-|.+||+..+.+|. +..|-||+||+||.|+.|..||+..       +....+.++-......+..   
T Consensus       207 -kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~-------Dhk~lvrQIs~GaYrEP~~---  275 (668)
T KOG0611|consen  207 -KFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGR-------DHKRLVRQISRGAYREPET---  275 (668)
T ss_pred             -cHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCc-------hHHHHHHHhhcccccCCCC---
Confidence             334567999999999999998885 6899999999999999999999832       1122222222222222111   


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                         .....-|+.+|+..||++|.|+.||..+-
T Consensus       276 ---PSdA~gLIRwmLmVNP~RRATieDiAsHW  304 (668)
T KOG0611|consen  276 ---PSDASGLIRWMLMVNPERRATIEDIASHW  304 (668)
T ss_pred             ---CchHHHHHHHHHhcCcccchhHHHHhhhh
Confidence               11255688999999999999999999886

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=1.4e-35  Score=275.46  Aligned_cols=227  Identities=24%  Similarity=0.317  Sum_probs=173.7

Q ss_pred             eeeeecCceEEEEEEeCC--C--cEEEEEecc----------------------CCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAELPD--G--KVVALKKLH----------------------HSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~--~--~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      +.||+|++|.||+|.+.+  +  ..||+|.++                      |+++......+.. ...++|+||+++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL   79 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence            368999999999998743  3  368999754                      4555555555555 888999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC--
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN--  280 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~--  280 (412)
                      |+|.+++..... ..++|.....++.|++.||+|||+.   +++|+||||+||+++.++.+||+|||+++........  
T Consensus        80 ~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~  155 (257)
T cd05040          80 GSLLDRLRKDAL-GHFLISTLCDYAVQIANGMRYLESK---RFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYV  155 (257)
T ss_pred             CcHHHHHHhccc-ccCcHHHHHHHHHHHHHHHHHHHhC---CccccccCcccEEEecCCEEEecccccccccccccccee
Confidence            999999876542 3589999999999999999999998   9999999999999999999999999999876443221  


Q ss_pred             -cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          281 -RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       281 -~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                       .....++..|+|||++.+..++.++||||||+++|||++ |+.||....       .......+.......+.+.   .
T Consensus       156 ~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~-------~~~~~~~~~~~~~~~~~~~---~  225 (257)
T cd05040         156 MEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLS-------GSQILKKIDKEGERLERPE---A  225 (257)
T ss_pred             cccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCC-------HHHHHHHHHhcCCcCCCCc---c
Confidence             123456789999999988889999999999999999999 999986221       1111111111111111111   1


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      ....+.+++.+||+.+|++||++.|+++.|.+
T Consensus       226 ~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~  257 (257)
T cd05040         226 CPQDIYNVMLQCWAHNPADRPTFAALREFLPE  257 (257)
T ss_pred             CCHHHHHHHHHHCCCCcccCCCHHHHHHHhcC
Confidence            22348889999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=1.1e-35  Score=277.52  Aligned_cols=228  Identities=22%  Similarity=0.303  Sum_probs=177.7

Q ss_pred             CcccceeeeecCceEEEEEEeCCCcEEEEEecc---------------------------CCccccceEEEecCceEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAELPDGKVVALKKLH---------------------------HSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~---------------------------~~~~~~~~~~~~~~~~~~lv  196 (412)
                      +|+..+.||+|+||.||+|...+++.+|+|.++                           |+++......+...+..+++
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   80 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIF   80 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEE
Confidence            477889999999999999988889999999653                           44444555567778899999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      +||+++++|.+++....   .+++..+..++.|++.||+|||+.   +++|+||+|+||++++++.++|+|||+++....
T Consensus        81 ~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  154 (265)
T cd06631          81 MEFVPGGSISSILNRFG---PLPEPVFCKYTKQILDGVAYLHNN---CVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAW  154 (265)
T ss_pred             EecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHhEEECCCCeEEeccchhhHhhhh
Confidence            99999999999986543   478899999999999999999998   999999999999999999999999999875432


Q ss_pred             CC------CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhh-ccC
Q 042435          277 DS------SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ-RLS  349 (412)
Q Consensus       277 ~~------~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~-~~~  349 (412)
                      ..      .......|+..|+|||++.+..++.++||||||+++|||++|+.||.....       .......... ...
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~-------~~~~~~~~~~~~~~  227 (265)
T cd06631         155 VGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDR-------LAAMFYIGAHRGLM  227 (265)
T ss_pred             ccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCCh-------HHHHHHhhhccCCC
Confidence            11      111234688999999999988899999999999999999999999863211       1111111111 111


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ++.+..   ....+.+++.+||+.+|++||++.|++++
T Consensus       228 ~~~~~~---~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  262 (265)
T cd06631         228 PRLPDS---FSAAAIDFVTSCLTRDQHERPSALQLLRH  262 (265)
T ss_pred             CCCCCC---CCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            111111   22347889999999999999999999863

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=1.4e-35  Score=279.77  Aligned_cols=239  Identities=21%  Similarity=0.278  Sum_probs=175.7

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ++|+..+.||+|+||.||+|... +|+.||+|++.                       |+++......+......++|||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEe
Confidence            46888999999999999999875 58999999653                       3344444445667788999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++++|..++....   .+++..+..++.|++.||+|||+.   +++||||||+||+++.++.++|+|||++.......
T Consensus        81 ~~~~~~l~~~~~~~~---~~~~~~~~~~~~ql~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~  154 (286)
T cd07847          81 YCDHTVLNELEKNPR---GVPEHLIKKIIWQTLQAVNFCHKH---NCIHRDVKPENILITKQGQIKLCDFGFARILTGPG  154 (286)
T ss_pred             ccCccHHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCChhhEEEcCCCcEEECccccceecCCCc
Confidence            999988887765433   489999999999999999999998   99999999999999999999999999998765443


Q ss_pred             CCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc------CCCCc-chhhHHhh-----
Q 042435          279 SNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS------SSGPK-IMLIDILY-----  345 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~------~~~~~-~~~~~~~~-----  345 (412)
                      .......++..|+|||.+.+ ..++.++||||||+++|||++|+.||........      ..... .......+     
T Consensus       155 ~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (286)
T cd07847         155 DDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFF  234 (286)
T ss_pred             ccccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhccccccc
Confidence            33334467889999999865 4578899999999999999999999863211000      00000 00000000     


Q ss_pred             hc--cCCcc-----chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 QR--LSPPI-----NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ~~--~~~~~-----~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..  ...+.     ..........+.+++.+||+.||++||++.|++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~  283 (286)
T cd07847         235 KGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLEH  283 (286)
T ss_pred             ccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhcC
Confidence            00  00000     00001112347899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=1.1e-35  Score=276.13  Aligned_cols=229  Identities=21%  Similarity=0.330  Sum_probs=179.6

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEEe
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +|++.+.||+|+||.||++.. .+|+.||+|++.                       |+++......+...+..++|+||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence            478889999999999999966 468999999653                       44555555567778899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++++|.+++..... ..+++.++..++.|++.||+|||+.   +++|+||+|+||+++.++.++++|||++........
T Consensus        81 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~  156 (256)
T cd08218          81 CEGGDLYKKINAQRG-VLFPEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVE  156 (256)
T ss_pred             CCCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEEeeccceeecCcchh
Confidence            999999988865332 2478999999999999999999998   999999999999999999999999999986544332


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      ......|++.|+|||+..+..++.++|+|||||+++||++|+.||...       ........+..... ++.+.   ..
T Consensus       157 ~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~-------~~~~~~~~~~~~~~-~~~~~---~~  225 (256)
T cd08218         157 LARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAG-------NMKNLVLKIIRGSY-PPVSS---HY  225 (256)
T ss_pred             hhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCC-------CHHHHHHHHhcCCC-CCCcc---cC
Confidence            233346888999999998888999999999999999999999998621       11111112221111 11111   22


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+.+++.+||+.+|++||++.||+++
T Consensus       226 ~~~~~~li~~~l~~~p~~Rp~~~~vl~~  253 (256)
T cd08218         226 SYDLRNLVSQLFKRNPRDRPSVNSILEK  253 (256)
T ss_pred             CHHHHHHHHHHhhCChhhCcCHHHHhhC
Confidence            3348899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=6.5e-36  Score=282.25  Aligned_cols=241  Identities=24%  Similarity=0.247  Sum_probs=181.4

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ++|++.+.||+|+||+||++... +++.||+|.+                      +|+++......+...+..++||||
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEF   84 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEec
Confidence            46788899999999999999764 6889999954                      355555566667778899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++++|.+++....   .+++.....++.+++.||.|||+.+  +++||||||+||++++++.++|+|||++....... 
T Consensus        85 ~~~~~L~~~~~~~~---~~~~~~~~~~~~~i~~~l~~LH~~~--~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~-  158 (284)
T cd06620          85 MDCGSLDRIYKKGG---PIPVEILGKIAVAVVEGLTYLYNVH--RIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSI-  158 (284)
T ss_pred             CCCCCHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHHhc--CeeccCCCHHHEEECCCCcEEEccCCcccchhhhc-
Confidence            99999998886543   5899999999999999999999732  79999999999999999999999999986543221 


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccch-hhHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ-KIIQ  358 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  358 (412)
                       .....|+..|+|||++.+..++.++|||||||++||++||+.||.................+............ ....
T Consensus       159 -~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (284)
T cd06620         159 -ADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSD  237 (284)
T ss_pred             -cCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhccCCCCCchh
Confidence             12346899999999998888999999999999999999999998743211000011111112222111110000 0111


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      ....+.+++.+||+.||++|||+.|++++.--
T Consensus       238 ~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~~  269 (284)
T cd06620         238 FPEDLRDFVDACLLKDPTERPTPQQLCAMPPF  269 (284)
T ss_pred             cCHHHHHHHHHHhcCCcccCcCHHHHhcCccc
Confidence            22347889999999999999999999987533

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=1.3e-35  Score=275.44  Aligned_cols=228  Identities=23%  Similarity=0.366  Sum_probs=176.6

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec-------------------cCCccccceEEEecCceEEEEEEeccCC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-------------------HHSETEDSAFVVYSPQCMFFIYEYMERG  203 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~g  203 (412)
                      ++|++.+.||+|+||.||++.. +++.||+|.+                   +|+++......+. .+..+++|||+++|
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~-~~~~~~v~e~~~~~   83 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLLGVIL-HNGLYIVMELMSKG   83 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc-CCCceEEEeecCcchHHHHHHHHHHHHhCCCCCcCeEEEEEc-CCCcEEEEECCCCC
Confidence            4588899999999999999975 6788999965                   3455555444443 45579999999999


Q ss_pred             ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCccc
Q 042435          204 SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTL  283 (412)
Q Consensus       204 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~  283 (412)
                      +|.+++..... ..+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++.....   ...
T Consensus        84 ~L~~~l~~~~~-~~~~~~~~~~~~~qi~~al~~lH~~---~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~---~~~  156 (254)
T cd05083          84 NLVNFLRTRGR-ALVSVIQLLQFSLDVAEGMEYLESK---KLVHRDLAARNILVSEDGVAKVSDFGLARVGSMG---VDN  156 (254)
T ss_pred             CHHHHHHhcCc-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCcEEECCCccceecccc---CCC
Confidence            99999875432 2488999999999999999999988   9999999999999999999999999998754322   112


Q ss_pred             ccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          284 QAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       284 ~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...+..|+|||.+.+..++.++|+||||+++|||++ |+.||....       . ....+............   .....
T Consensus       157 ~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~-------~-~~~~~~~~~~~~~~~~~---~~~~~  225 (254)
T cd05083         157 SKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMS-------L-KEVKECVEKGYRMEPPE---GCPAD  225 (254)
T ss_pred             CCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCC-------H-HHHHHHHhCCCCCCCCC---cCCHH
Confidence            234568999999988889999999999999999998 999986321       1 11122222222221111   12234


Q ss_pred             HHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          363 VSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      +.+++.+||+.+|++||+++++++.|++
T Consensus       226 ~~~li~~~l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         226 VYVLMTSCWETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             HHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence            7899999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1e-35  Score=281.05  Aligned_cols=230  Identities=23%  Similarity=0.307  Sum_probs=175.6

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc----------------------CCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH----------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ++|++.+.||+|+||.||++... +++.||+|.++                      |+++......+...+..++||||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEY   80 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEee
Confidence            36888899999999999999875 78999999654                      33444444446678889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++++|..++........+++..+..++.|++.||.|||+.+  +++||||||+||+++.++.++|+|||++....... 
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~--~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~-  157 (286)
T cd06622          81 MDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEH--NIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASL-  157 (286)
T ss_pred             cCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcC--CEeeCCCCHHHEEECCCCCEEEeecCCcccccCCc-
Confidence            999999888876432235899999999999999999999632  89999999999999999999999999987653221 


Q ss_pred             CcccccccccccccccccCcc------cCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhh---hccCC
Q 042435          280 NRTLQAGTYGYIALELVYTMV------VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY---QRLSP  350 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~------~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~---~~~~~  350 (412)
                       .....++..|+|||.+.+..      ++.++|+|||||++|||++|+.||....       ... ....+.   ....+
T Consensus       158 -~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~-------~~~-~~~~~~~~~~~~~~  228 (286)
T cd06622         158 -AKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPET-------YAN-IFAQLSAIVDGDPP  228 (286)
T ss_pred             -cccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcc-------hhh-HHHHHHHHhhcCCC
Confidence             22345788999999985443      5789999999999999999999986321       111 111111   11111


Q ss_pred             ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       351 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..+.   .....+.+++.+||+.+|++||++++++++
T Consensus       229 ~~~~---~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~  262 (286)
T cd06622         229 TLPS---GYSDDAQDFVAKCLNKIPNRRPTYAQLLEH  262 (286)
T ss_pred             CCCc---ccCHHHHHHHHHHcccCcccCCCHHHHhcC
Confidence            1111   123347889999999999999999999975

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=1.3e-35  Score=286.95  Aligned_cols=237  Identities=22%  Similarity=0.317  Sum_probs=181.7

Q ss_pred             cCcccceeeeecCceEEEEEEeC--------CCcEEEEEec-----------------------cCCccccceEEEecCc
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP--------DGKVVALKKL-----------------------HHSETEDSAFVVYSPQ  191 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~--------~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~  191 (412)
                      .+|.+.+.||+|+||.||+|...        .+..||+|.+                       +|+++......+...+
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG   91 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCC
Confidence            35888999999999999999642        1236899954                       3556666666677788


Q ss_pred             eEEEEEEeccCCceeeeeccCc-------------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec
Q 042435          192 CMFFIYEYMERGSLFCVLRDDD-------------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN  258 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~  258 (412)
                      ..++++||+++|+|.+++....             ....++|.+++.++.|++.||+|||++   +++||||||+||+++
T Consensus        92 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---givH~dlkp~Nill~  168 (334)
T cd05100          92 PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQ---KCIHRDLAARNVLVT  168 (334)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEEc
Confidence            8999999999999999886432             123488999999999999999999998   999999999999999


Q ss_pred             CCCcEEEeecCCccccCCCCCCc--ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCC
Q 042435          259 SNLEAFVADFGTVRLLDVDSSNR--TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSG  335 (412)
Q Consensus       259 ~~~~~kl~DfGla~~~~~~~~~~--~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~  335 (412)
                      .++.+||+|||+++.........  ....++..|+|||++.+..++.++||||||+++|||++ |..||...        
T Consensus       169 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~--------  240 (334)
T cd05100         169 EDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGI--------  240 (334)
T ss_pred             CCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCC--------
Confidence            99999999999998654322111  22234567999999999899999999999999999998 88887522        


Q ss_pred             CcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          336 PKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      ........+......+.+..   ....+.+++.+||+.+|++|||+.|+++.|+++..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~---~~~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~  295 (334)
T cd05100         241 PVEELFKLLKEGHRMDKPAN---CTHELYMIMRECWHAVPSQRPTFKQLVEDLDRVLT  295 (334)
T ss_pred             CHHHHHHHHHcCCCCCCCCC---CCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHhh
Confidence            11112222222222111111   12247899999999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=1.7e-35  Score=282.98  Aligned_cols=237  Identities=23%  Similarity=0.263  Sum_probs=180.0

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ++|++.+.||+|+||.||++... ++..+|+|.+                      +|+++......+..++..++||||
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey   80 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEH   80 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeec
Confidence            46899999999999999999764 6888998854                      456777777778889999999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++++|.++++...   .+++..+..++.|+++||+|||+.+  +++||||||+||+++.++.++|+|||++......  
T Consensus        81 ~~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH~~~--~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~--  153 (308)
T cd06615          81 MDGGSLDQVLKKAG---RIPENILGKISIAVLRGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS--  153 (308)
T ss_pred             cCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhhC--CEEECCCChHHEEEecCCcEEEccCCCccccccc--
Confidence            99999999987553   5889999999999999999999732  8999999999999999999999999998754322  


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccc-----cCC---CC---------------
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS-----SSS---GP---------------  336 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~-----~~~---~~---------------  336 (412)
                      ......|+..|+|||.+.+..++.++||||||+++|||++|+.||.......     ...   ..               
T Consensus       154 ~~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (308)
T cd06615         154 MANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDS  233 (308)
T ss_pred             ccccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhHHHhhcCccccccccCCcccccCCCCCc
Confidence            1233468899999999988889999999999999999999999985221000     000   00               


Q ss_pred             --cchhhHHhhh---ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          337 --KIMLIDILYQ---RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       337 --~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                        .....+..+.   ...+..+..  .....+.+++.+||+.||++|||+.|++++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~  288 (308)
T cd06615         234 PRPMAIFELLDYIVNEPPPKLPSG--AFSDEFQDFVDKCLKKNPKERADLKELTKHP  288 (308)
T ss_pred             cchhhHHHHHHHHhcCCCccCcCc--ccCHHHHHHHHHHccCChhhCcCHHHHhcCh
Confidence              0000000000   000000000  1123478999999999999999999999873

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=2.6e-35  Score=273.53  Aligned_cols=230  Identities=20%  Similarity=0.271  Sum_probs=182.5

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +|+..+.||+|+||.||.++. .+++.+++|.+                       +|+++......+...+..+++|||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence            478889999999999999965 56889999964                       355555666667788899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++|+|.+++.... ...+++.++..++.|++.||+|||+.   +++|+||+|+||++++++.+||+|||+++.......
T Consensus        81 ~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~  156 (256)
T cd08221          81 ANGGTLYDKIVRQK-GQLFEEEMVLWYLFQIVSAVSYIHKA---GILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYS  156 (256)
T ss_pred             cCCCcHHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChHhEEEeCCCCEEECcCcceEEcccccc
Confidence            99999999887643 23589999999999999999999998   999999999999999999999999999987654443


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      ......+++.|+|||...+..++.++||||||+++|||++|+.||...       ........+......+. .   ...
T Consensus       157 ~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~-------~~~~~~~~~~~~~~~~~-~---~~~  225 (256)
T cd08221         157 MAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDAT-------NPLNLVVKIVQGNYTPV-V---SVY  225 (256)
T ss_pred             cccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCC-------CHHHHHHHHHcCCCCCC-c---ccc
Confidence            334456899999999998888899999999999999999999998631       11111222222222111 1   112


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      ...+.+++.+||+.+|++||+++|+++++
T Consensus       226 ~~~~~~~i~~~l~~~p~~R~s~~~ll~~~  254 (256)
T cd08221         226 SSELISLVHSLLQQDPEKRPTADEVLDQP  254 (256)
T ss_pred             CHHHHHHHHHHcccCcccCCCHHHHhhCc
Confidence            23478899999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=2.6e-35  Score=282.59  Aligned_cols=174  Identities=24%  Similarity=0.375  Sum_probs=139.3

Q ss_pred             ceeeeecCceEEEEEEeC---CCcEEEEEec-------------------cCCccccceEEEe--cCceEEEEEEeccCC
Q 042435          148 RYCIGTGGYDSVYKAELP---DGKVVALKKL-------------------HHSETEDSAFVVY--SPQCMFFIYEYMERG  203 (412)
Q Consensus       148 ~~~lG~G~~g~Vy~~~~~---~~~~vAvK~l-------------------~~~~~~~~~~~~~--~~~~~~lv~ey~~~g  203 (412)
                      ..+||+|+||.||+|...   +++.||+|.+                   +|+++......+.  .....+++|||+. +
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~-~   84 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE-H   84 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCCcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccC-C
Confidence            468999999999999764   4678999965                   4666666555543  3456899999996 4


Q ss_pred             ceeeeeccCc------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe----cCCCcEEEeecCCccc
Q 042435          204 SLFCVLRDDD------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL----NSNLEAFVADFGTVRL  273 (412)
Q Consensus       204 sL~~~l~~~~------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl----~~~~~~kl~DfGla~~  273 (412)
                      +|.+++....      ....+++..+..++.|++.||+|||++   +|+||||||+|||+    +.++.+||+|||+++.
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~  161 (317)
T cd07868          85 DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFARL  161 (317)
T ss_pred             CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEecCCCCcCcEEEeecCceec
Confidence            7776654321      122488899999999999999999998   99999999999999    4567899999999987


Q ss_pred             cCCCCC---CcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcc
Q 042435          274 LDVDSS---NRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGE  325 (412)
Q Consensus       274 ~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~  325 (412)
                      ......   ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.
T Consensus       162 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~  217 (317)
T cd07868         162 FNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFH  217 (317)
T ss_pred             cCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCcc
Confidence            643321   1234578999999999876 458899999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=2e-35  Score=276.65  Aligned_cols=234  Identities=23%  Similarity=0.314  Sum_probs=178.3

Q ss_pred             cCcccceeeeecCceEEEEEEeCC----CcEEEEEec----------------------cCCccccceEEEecCceEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPD----GKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~----~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ++|.+.+.||+|+||.||+|...+    ...||+|..                      .|+++......+. .+..++|
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~-~~~~~lv   84 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVIT-ENPVWIV   84 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEc-CCCcEEE
Confidence            457888999999999999997643    246898964                      3455555554444 4567899


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++|+|.+++.....  .+++..++.++.|++.||+|||+.   +++||||||+||+++.++.++++|||+++....
T Consensus        85 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~  159 (270)
T cd05056          85 MELAPLGELRSYLQVNKY--SLDLASLILYSYQLSTALAYLESK---RFVHRDIAARNVLVSSPDCVKLGDFGLSRYLED  159 (270)
T ss_pred             EEcCCCCcHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeccccChheEEEecCCCeEEccCceeeeccc
Confidence            999999999999875432  489999999999999999999988   999999999999999999999999999986543


Q ss_pred             CCCC-cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          277 DSSN-RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       277 ~~~~-~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      .... .....++..|+|||.+....++.++||||||+++||+++ |..||....       ... ....+......+.+.
T Consensus       160 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~-------~~~-~~~~~~~~~~~~~~~  231 (270)
T cd05056         160 ESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVK-------NND-VIGRIENGERLPMPP  231 (270)
T ss_pred             ccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCC-------HHH-HHHHHHcCCcCCCCC
Confidence            3211 122234568999999988889999999999999999986 999986321       111 111111111111111


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      .   ....+.+++.+||..+|++|||+.++++.|+++..
T Consensus       232 ~---~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~  267 (270)
T cd05056         232 N---CPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDILQ  267 (270)
T ss_pred             C---CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence            1   12348889999999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.1e-35  Score=273.29  Aligned_cols=226  Identities=23%  Similarity=0.317  Sum_probs=174.6

Q ss_pred             eeeeecCceEEEEEEeCCCcEEEEEecc----------------------CCccccceEEEecCceEEEEEEeccCCcee
Q 042435          149 YCIGTGGYDSVYKAELPDGKVVALKKLH----------------------HSETEDSAFVVYSPQCMFFIYEYMERGSLF  206 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~lv~ey~~~gsL~  206 (412)
                      ++||+|+||.||++...+++.||+|.++                      |+++......+......++||||+++++|.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~   80 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLL   80 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHH
Confidence            3689999999999988779999999754                      344444445567778899999999999999


Q ss_pred             eeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCc--ccc
Q 042435          207 CVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR--TLQ  284 (412)
Q Consensus       207 ~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~--~~~  284 (412)
                      +++.....  .+++..++.++.+++.||+|||++   +++||||||+||+++.++.++|+|||+++.........  ...
T Consensus        81 ~~l~~~~~--~~~~~~~~~~~~~~~~~l~~lH~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~  155 (251)
T cd05041          81 TFLRKKKN--RLTVKKLLQMSLDAAAGMEYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLK  155 (251)
T ss_pred             HHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccC
Confidence            98865432  478999999999999999999998   99999999999999999999999999997654221111  112


Q ss_pred             cccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHH
Q 042435          285 AGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILV  363 (412)
Q Consensus       285 ~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (412)
                      .++..|+|||.+.+..++.++|+||||+++|||+| |..||....        .....+.+......+.+..   ....+
T Consensus       156 ~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~--------~~~~~~~~~~~~~~~~~~~---~~~~~  224 (251)
T cd05041         156 QIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMS--------NQQTRERIESGYRMPAPQL---CPEEI  224 (251)
T ss_pred             cceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCC--------HHHHHHHHhcCCCCCCCcc---CCHHH
Confidence            33567999999988889999999999999999999 888875321        1112222222211111111   12348


Q ss_pred             HHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          364 STIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       364 ~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      .+++.+||..+|++|||+.|+++.|++
T Consensus       225 ~~li~~~l~~~p~~Rp~~~ell~~l~~  251 (251)
T cd05041         225 YRLMLQCWAYDPENRPSFSEIYNELQI  251 (251)
T ss_pred             HHHHHHHhccChhhCcCHHHHHHHhhC
Confidence            899999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=6.5e-36  Score=291.72  Aligned_cols=177  Identities=23%  Similarity=0.276  Sum_probs=151.3

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEe---------------ccCCccccceEEEecCceEEEEEEeccCCc
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKK---------------LHHSETEDSAFVVYSPQCMFFIYEYMERGS  204 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~---------------l~~~~~~~~~~~~~~~~~~~lv~ey~~~gs  204 (412)
                      ...+|++.+.||+|+||.||+|... +++.||+|.               ++|+++.+....+...+..++|+||+. ++
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~  142 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKGTTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLPHYS-SD  142 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCccccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEEccC-Cc
Confidence            3457999999999999999999775 578899994               468888888888888899999999995 68


Q ss_pred             eeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcccc
Q 042435          205 LFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ  284 (412)
Q Consensus       205 L~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~  284 (412)
                      |.+++....  ..++|..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++..... ......
T Consensus       143 l~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~-~~~~~~  216 (357)
T PHA03209        143 LYTYLTKRS--RPLPIDQALIIEKQILEGLRYLHAQ---RIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVA-PAFLGL  216 (357)
T ss_pred             HHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEecCccccccccC-cccccc
Confidence            888876533  2589999999999999999999998   9999999999999999999999999999753322 122345


Q ss_pred             cccccccccccccCcccCcccccHHHHHHHHHHHhCCCCc
Q 042435          285 AGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPG  324 (412)
Q Consensus       285 ~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~  324 (412)
                      .||+.|+|||++.+..++.++|||||||++|||+++..|+
T Consensus       217 ~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~  256 (357)
T PHA03209        217 AGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTI  256 (357)
T ss_pred             cccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence            6899999999999999999999999999999999866554

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.4e-37  Score=270.37  Aligned_cols=233  Identities=23%  Similarity=0.308  Sum_probs=189.2

Q ss_pred             HHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------------cCCccccceEEE
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------------HHSETEDSAFVV  187 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------------~~~~~~~~~~~~  187 (412)
                      ...-+.|+..+.||.|..+.|-++.. .+|..+|+|++                              -|+++.....++
T Consensus        13 ~~fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~y   92 (411)
T KOG0599|consen   13 KGFYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVY   92 (411)
T ss_pred             hhHHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeec
Confidence            44556788889999999999998855 57888999965                              367777777778


Q ss_pred             ecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEee
Q 042435          188 YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVAD  267 (412)
Q Consensus       188 ~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~D  267 (412)
                      .++..+++|+|.|+.|.|+++|.+.-   .++.....+|+.|+..|++|||..   +||||||||+|||+|++.++||+|
T Consensus        93 es~sF~FlVFdl~prGELFDyLts~V---tlSEK~tR~iMrqlfegVeylHa~---~IVHRDLKpENILlddn~~i~isD  166 (411)
T KOG0599|consen   93 ESDAFVFLVFDLMPRGELFDYLTSKV---TLSEKETRRIMRQLFEGVEYLHAR---NIVHRDLKPENILLDDNMNIKISD  166 (411)
T ss_pred             cCcchhhhhhhhcccchHHHHhhhhe---eecHHHHHHHHHHHHHHHHHHHHh---hhhhcccChhheeeccccceEEec
Confidence            88889999999999999999997653   688899999999999999999999   999999999999999999999999


Q ss_pred             cCCccccCCCCCCcccccccccccccccccC------cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhh
Q 042435          268 FGTVRLLDVDSSNRTLQAGTYGYIALELVYT------MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLI  341 (412)
Q Consensus       268 fGla~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~  341 (412)
                      ||++..+.+.. .....+|||+|.|||.+..      ..|+...|+||.|||+|.++.|..||..-        .+..+.
T Consensus       167 FGFa~~l~~Ge-kLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHR--------kQmlML  237 (411)
T KOG0599|consen  167 FGFACQLEPGE-KLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHR--------KQMLML  237 (411)
T ss_pred             cceeeccCCch-hHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHH--------HHHHHH
Confidence            99999876553 3455799999999999853      34788999999999999999999998621        111222


Q ss_pred             HHh-hhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          342 DIL-YQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       342 ~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..+ ....... .+.+.+....+.+|+.+|++.||.+|.|++|++++
T Consensus       238 R~ImeGkyqF~-speWadis~~~KdLIsrlLqVdp~~Ritake~LaH  283 (411)
T KOG0599|consen  238 RMIMEGKYQFR-SPEWADISATVKDLISRLLQVDPTKRITAKEALAH  283 (411)
T ss_pred             HHHHhcccccC-CcchhhccccHHHHHHHHHeeCchhcccHHHHhcC
Confidence            222 2222221 23344445568999999999999999999999876

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=1.9e-35  Score=289.27  Aligned_cols=238  Identities=21%  Similarity=0.186  Sum_probs=172.2

Q ss_pred             HhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEec------
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVYS------  189 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~------  189 (412)
                      ...++|++.+.||+|+||.||++.. ..++.||||++.                       |+++.....++..      
T Consensus        21 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~  100 (364)
T cd07875          21 TVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEE  100 (364)
T ss_pred             chhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccc
Confidence            3457899999999999999999976 468899999764                       3444443333322      


Q ss_pred             CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      ....++||||+++ +|.+.+..     .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||
T Consensus       101 ~~~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG  171 (364)
T cd07875         101 FQDVYIVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFG  171 (364)
T ss_pred             cCeEEEEEeCCCC-CHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEECCCCcEEEEeCC
Confidence            2357999999965 66665532     378889999999999999999998   99999999999999999999999999


Q ss_pred             CccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccc-------cCCCCcchh--
Q 042435          270 TVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS-------SSSGPKIML--  340 (412)
Q Consensus       270 la~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~-------~~~~~~~~~--  340 (412)
                      +++...... ......||..|+|||++.+..++.++|||||||++|||++|+.||.......       ....+....  
T Consensus       172 ~a~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  250 (364)
T cd07875         172 LARTAGTSF-MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMK  250 (364)
T ss_pred             CccccCCCC-cccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHH
Confidence            998654322 2233468999999999999999999999999999999999999986321100       000000000  


Q ss_pred             ------hHHhhhccC--------------Cc-cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          341 ------IDILYQRLS--------------PP-INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       341 ------~~~~~~~~~--------------~~-~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                            .........              .+ ...........+.+++.+|++.||++|||+.|++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~h  318 (364)
T cd07875         251 KLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH  318 (364)
T ss_pred             hhhHHHHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence                  000000000              00 000000012347899999999999999999999986

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=1.3e-35  Score=277.94  Aligned_cols=229  Identities=22%  Similarity=0.257  Sum_probs=166.9

Q ss_pred             eeeecCceEEEEEEeCC---CcEEEEEecc----------------------CCccccceEEEecCceEEEEEEeccCCc
Q 042435          150 CIGTGGYDSVYKAELPD---GKVVALKKLH----------------------HSETEDSAFVVYSPQCMFFIYEYMERGS  204 (412)
Q Consensus       150 ~lG~G~~g~Vy~~~~~~---~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~lv~ey~~~gs  204 (412)
                      .||+|+||.||+|.+.+   +..+|+|+++                      |+++......+.+....++||||+++|+
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGD   81 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCc
Confidence            58999999999997643   4578999653                      5555555566777788899999999999


Q ss_pred             eeeeeccCcc--cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC--C
Q 042435          205 LFCVLRDDDE--AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS--N  280 (412)
Q Consensus       205 L~~~l~~~~~--~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~--~  280 (412)
                      |.++++....  ....++..+..++.|++.||+|||+.   +++||||||+||+++.++++||+|||+++.......  .
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~  158 (269)
T cd05087          82 LKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKN---NFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVT  158 (269)
T ss_pred             HHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEECCccccccccCcceeec
Confidence            9999875431  23467888889999999999999998   999999999999999999999999999875433221  1


Q ss_pred             cccccccccccccccccCc-------ccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHh-hhccCCc
Q 042435          281 RTLQAGTYGYIALELVYTM-------VVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDIL-YQRLSPP  351 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~-------~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  351 (412)
                      .....++..|+|||++.+.       .++.++||||||+++|||++ |+.||....       ......... ......+
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~-------~~~~~~~~~~~~~~~~~  231 (269)
T cd05087         159 PDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLS-------DEQVLTYTVREQQLKLP  231 (269)
T ss_pred             CCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCC-------hHHHHHHHhhcccCCCC
Confidence            1234567889999988532       35789999999999999996 999986321       111111111 1111111


Q ss_pred             cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                      .+.........+.+++.+|| .+|++|||++||+..|+
T Consensus       232 ~~~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         232 KPRLKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             CCccCCCCChHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            00100011223677889999 58999999999998875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=2.4e-35  Score=277.62  Aligned_cols=235  Identities=26%  Similarity=0.403  Sum_probs=181.4

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCc----EEEEEec----------------------cCCccccceEEEecCceEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGK----VVALKKL----------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~----~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ++|++.+.||+|+||.||+|.++ +|+    .+|+|.+                      +|+++......+.. ...++
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~   85 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQL   85 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceEE
Confidence            46788899999999999999764 233    6899865                      35555555555655 78899


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      |+||+++|+|.+++.....  .+++.....++.|++.||+|||+.   +++||||||+||++++++.+||+|||+++...
T Consensus        86 v~e~~~~g~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~  160 (279)
T cd05057          86 ITQLMPLGCLLDYVRNHKD--NIGSQYLLNWCVQIAKGMSYLEEK---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLD  160 (279)
T ss_pred             EEecCCCCcHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhC---CEEecccCcceEEEcCCCeEEECCCccccccc
Confidence            9999999999999876432  489999999999999999999998   99999999999999999999999999998765


Q ss_pred             CCCCCc--ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          276 VDSSNR--TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       276 ~~~~~~--~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ......  ....++..|+|||.+....++.++|+||||+++||+++ |+.||+..        ....+.+.+......+.
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~--------~~~~~~~~~~~~~~~~~  232 (279)
T cd05057         161 VDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGI--------PAVEIPDLLEKGERLPQ  232 (279)
T ss_pred             CcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCC--------CHHHHHHHHhCCCCCCC
Confidence            332211  11223568999999988889999999999999999999 99998732        11112222222221111


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                      +..   ....+.+++.+||..||++||++.++++.|+.+...
T Consensus       233 ~~~---~~~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05057         233 PPI---CTIDVYMVLVKCWMIDAESRPTFKELINEFSKMARD  271 (279)
T ss_pred             CCC---CCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhC
Confidence            111   123478899999999999999999999999987543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=1.3e-35  Score=283.13  Aligned_cols=235  Identities=23%  Similarity=0.362  Sum_probs=179.8

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCc----EEEEEec----------------------cCCccccceEEEecCceEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGK----VVALKKL----------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~----~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ++|+..+.||+|+||.||+|.+. +|+    .||+|.+                      +|+++......+.. ...++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~-~~~~~   85 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLS-PTIQL   85 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcC-CCcee
Confidence            46778889999999999999763 444    5788854                      45566665555544 45679


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ++||+++|+|.+++.....  .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++...
T Consensus        86 v~e~~~~g~l~~~~~~~~~--~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~  160 (303)
T cd05110          86 VTQLMPHGCLLDYVHEHKD--NIGSQLLLNWCVQIAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLE  160 (303)
T ss_pred             eehhcCCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHhhc---CeeccccccceeeecCCCceEEcccccccccc
Confidence            9999999999998875432  478999999999999999999998   99999999999999999999999999998664


Q ss_pred             CCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          276 VDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       276 ~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      .....  .....++..|+|||++.+..++.++||||||+++||+++ |+.||...        ......+.+......+.
T Consensus       161 ~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~--------~~~~~~~~~~~~~~~~~  232 (303)
T cd05110         161 GDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGI--------PTREIPDLLEKGERLPQ  232 (303)
T ss_pred             CcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCC--------CHHHHHHHHHCCCCCCC
Confidence            33221  122345678999999988889999999999999999997 88998632        11112223322222211


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                      ...   ....+.+++.+||..+|++||+++++++.|+++...
T Consensus       233 ~~~---~~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~~~  271 (303)
T cd05110         233 PPI---CTIDVYMVMVKCWMIDADSRPKFKELAAEFSRMARD  271 (303)
T ss_pred             CCC---CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence            111   123478899999999999999999999999987543

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=2e-35  Score=275.54  Aligned_cols=234  Identities=25%  Similarity=0.377  Sum_probs=180.0

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEecc----------------------CCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH----------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ++|++.+.||.|+||+||+|.. .++..+|+|++.                      |+++......+...+..++|+||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEec
Confidence            4789999999999999999986 468899999763                      33344444456678889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++++|.++++.......+++.....++.|++.||+|||+.   +++||||||+||++++++.++|+|||++........
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~---~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~  157 (267)
T cd06610          81 LSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSN---GQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGD  157 (267)
T ss_pred             cCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccchHHHhccCcc
Confidence            99999999987643323589999999999999999999998   999999999999999999999999999876654322


Q ss_pred             C----cccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          280 N----RTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       280 ~----~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      .    .....|+..|+|||++... .++.++|+|||||++|||++|+.||.....       .....+...... +....
T Consensus       158 ~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~-------~~~~~~~~~~~~-~~~~~  229 (267)
T cd06610         158 RTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPP-------MKVLMLTLQNDP-PSLET  229 (267)
T ss_pred             ccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccCh-------hhhHHHHhcCCC-CCcCC
Confidence            2    1334688999999998776 789999999999999999999999873211       111122221111 11100


Q ss_pred             hh--HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          355 KI--IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       355 ~~--~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..  ......+.+++.+||+.||++||++.|++++
T Consensus       230 ~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~~  264 (267)
T cd06610         230 GADYKKYSKSFRKMISLCLQKDPSKRPTAEELLKH  264 (267)
T ss_pred             ccccccccHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence            00  1122347899999999999999999999874

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=2.4e-35  Score=275.67  Aligned_cols=228  Identities=21%  Similarity=0.295  Sum_probs=171.5

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEecc--------------------------CCccccceEEEec--CceE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH--------------------------HSETEDSAFVVYS--PQCM  193 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~--------------------------~~~~~~~~~~~~~--~~~~  193 (412)
                      .+|+..+.||+|+||.||+|.. .++..||+|.++                          |+++......+..  ....
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            4788999999999999999976 468999999653                          3343333333333  3567


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ++++||+++++|.+++....   .+++.....++.|++.||+|||+.   +++||||||+||+++.++.++|+|||+++.
T Consensus        82 ~l~~e~~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~LH~~---~i~H~~l~p~nil~~~~~~~~l~dfg~~~~  155 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAYG---ALTESVTRKYTRQILEGMSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKR  155 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCCCccc
Confidence            89999999999999887543   488999999999999999999988   999999999999999999999999999876


Q ss_pred             cCCCC---CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCC
Q 042435          274 LDVDS---SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP  350 (412)
Q Consensus       274 ~~~~~---~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (412)
                      .....   .......++..|+|||.+.+..++.++|||||||++||+++|+.||....       ..............+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~-------~~~~~~~~~~~~~~~  228 (266)
T cd06651         156 LQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYE-------AMAAIFKIATQPTNP  228 (266)
T ss_pred             cccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccc-------hHHHHHHHhcCCCCC
Confidence            53211   11223458889999999998889999999999999999999999987321       111111111111111


Q ss_pred             ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       351 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..+..   ....+.+++ +||..+|++||+++|++++
T Consensus       229 ~~~~~---~~~~~~~li-~~~~~~p~~Rp~~~eil~h  261 (266)
T cd06651         229 QLPSH---ISEHARDFL-GCIFVEARHRPSAEELLRH  261 (266)
T ss_pred             CCchh---cCHHHHHHH-HHhcCChhhCcCHHHHhcC
Confidence            11111   112245555 7888999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=1.2e-35  Score=289.73  Aligned_cols=238  Identities=21%  Similarity=0.195  Sum_probs=172.9

Q ss_pred             HhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEec------
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVYS------  189 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~------  189 (412)
                      ...++|++.+.||+|+||.||++.. ..++.||||++.                       |+++.....++..      
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   93 (355)
T cd07874          14 TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEE   93 (355)
T ss_pred             hhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccc
Confidence            4557899999999999999999976 468899999763                       4444444444332      


Q ss_pred             CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      ....++||||+++ +|.+.+..     .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||
T Consensus        94 ~~~~~lv~e~~~~-~l~~~~~~-----~l~~~~~~~~~~qi~~aL~~LH~~---givHrDikp~Nill~~~~~~kl~Dfg  164 (355)
T cd07874          94 FQDVYLVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFG  164 (355)
T ss_pred             cceeEEEhhhhcc-cHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEECCCCCEEEeeCc
Confidence            2357999999965 66555532     378889999999999999999998   99999999999999999999999999


Q ss_pred             CccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccccccc-------CCCCc-----
Q 042435          270 TVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS-------SSGPK-----  337 (412)
Q Consensus       270 la~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~-------~~~~~-----  337 (412)
                      +++...... ......||..|+|||++.+..++.++|||||||++|||++|+.||........       ...+.     
T Consensus       165 ~~~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  243 (355)
T cd07874         165 LARTAGTSF-MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMK  243 (355)
T ss_pred             ccccCCCcc-ccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence            998654322 22334689999999999988999999999999999999999999863211000       00000     


Q ss_pred             ---chhhHHhhhccC---------------CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          338 ---IMLIDILYQRLS---------------PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       338 ---~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                         ............               +............+.+++.+|++.||++|||+.|++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~h  311 (355)
T cd07874         244 KLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQH  311 (355)
T ss_pred             hhcHHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcC
Confidence               000001000000               00000000112347899999999999999999999987

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=1.7e-35  Score=281.85  Aligned_cols=239  Identities=18%  Similarity=0.238  Sum_probs=176.4

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ++|.+.+.||+|+||.||+|... +++.||+|.+                      +|+++......+...+..++||||
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~   85 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   85 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEec
Confidence            56888999999999999999764 6889999964                      456666667778888899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      ++ ++|.+++.....  .+++.....++.|++.||+|||+.   +++||||||+||+++.++.++|+|||+++.......
T Consensus        86 ~~-~~l~~~l~~~~~--~~~~~~~~~~~~qi~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~  159 (301)
T cd07873          86 LD-KDLKQYLDDCGN--SINMHNVKLFLFQLLRGLNYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPTK  159 (301)
T ss_pred             cc-cCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCC
Confidence            97 588887765432  478899999999999999999998   999999999999999999999999999976543333


Q ss_pred             CcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcchhhHHhhh----
Q 042435          280 NRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKIMLIDILYQ----  346 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~~~~~~~~~----  346 (412)
                      ......+++.|+|||.+.+ ..++.++|||||||++|||+||+.||........        ..............    
T Consensus       160 ~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (301)
T cd07873         160 TYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFK  239 (301)
T ss_pred             cccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhcccccc
Confidence            3334467889999998865 4578899999999999999999999863211000        00000000000000    


Q ss_pred             ccC-Cccchh-----hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          347 RLS-PPINQK-----IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       347 ~~~-~~~~~~-----~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ... +.....     .......+.+++.+|++.||.+|||++|++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~h  286 (301)
T cd07873         240 SYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKH  286 (301)
T ss_pred             ccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            000 000000     00112247789999999999999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=8.1e-36  Score=283.04  Aligned_cols=226  Identities=26%  Similarity=0.344  Sum_probs=174.5

Q ss_pred             ccceeeeecCceEEEEEEe-CCCcEEEEEecc---------------------CCccccceEEEecCceEEEEEEeccCC
Q 042435          146 HIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH---------------------HSETEDSAFVVYSPQCMFFIYEYMERG  203 (412)
Q Consensus       146 ~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~---------------------~~~~~~~~~~~~~~~~~~lv~ey~~~g  203 (412)
                      .....||+|+||.||++.. .+++.||||.+.                     |+++......+...+..++||||++++
T Consensus        25 ~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~  104 (292)
T cd06658          25 DSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGG  104 (292)
T ss_pred             hhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCC
Confidence            3346799999999999976 468899999763                     344444444566778899999999999


Q ss_pred             ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCccc
Q 042435          204 SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTL  283 (412)
Q Consensus       204 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~  283 (412)
                      +|.+++...    .+++..+..++.|++.||+|||++   +++||||||+||++++++.++|+|||++............
T Consensus       105 ~L~~~~~~~----~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~  177 (292)
T cd06658         105 ALTDIVTHT----RMNEEQIATVCLSVLRALSYLHNQ---GVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKS  177 (292)
T ss_pred             cHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEccCcchhhcccccccCce
Confidence            999887543    388999999999999999999998   9999999999999999999999999998765433333334


Q ss_pred             ccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHH
Q 042435          284 QAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILV  363 (412)
Q Consensus       284 ~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (412)
                      ..|+..|+|||...+..++.++||||||+++|||++|+.||....       ... ....+........ .........+
T Consensus       178 ~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~-------~~~-~~~~~~~~~~~~~-~~~~~~~~~~  248 (292)
T cd06658         178 LVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEP-------PLQ-AMRRIRDNLPPRV-KDSHKVSSVL  248 (292)
T ss_pred             eecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-------HHH-HHHHHHhcCCCcc-ccccccCHHH
Confidence            568899999999988889999999999999999999999986321       111 1111111111111 1111122247


Q ss_pred             HHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          364 STIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       364 ~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .+++.+||..||++|||++|++++
T Consensus       249 ~~li~~~l~~~P~~Rpt~~~il~~  272 (292)
T cd06658         249 RGFLDLMLVREPSQRATAQELLQH  272 (292)
T ss_pred             HHHHHHHccCChhHCcCHHHHhhC
Confidence            788999999999999999999976

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=1.7e-35  Score=281.04  Aligned_cols=236  Identities=18%  Similarity=0.216  Sum_probs=161.9

Q ss_pred             cCcccceeeeecCceEEEEEEeCC----CcEEEEEecc--------------------------------CCccccceEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPD----GKVVALKKLH--------------------------------HSETEDSAFV  186 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~----~~~vAvK~l~--------------------------------~~~~~~~~~~  186 (412)
                      ++|++.++||+|+||.||+|...+    +..+|+|...                                |.++......
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            579999999999999999998754    4566666432                                1112221111


Q ss_pred             EecC----ceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCc
Q 042435          187 VYSP----QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLE  262 (412)
Q Consensus       187 ~~~~----~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~  262 (412)
                      +...    ...++++|++.. ++.+.+....   ..++..+..++.|++.||+|||+.   +|+||||||+|||++.++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~iiHrDiKp~Nill~~~~~  164 (294)
T PHA02882         92 GSFKRCRMYYRFILLEKLVE-NTKEIFKRIK---CKNKKLIKNIMKDMLTTLEYIHEH---GISHGDIKPENIMVDGNNR  164 (294)
T ss_pred             eeEecCCceEEEEEEehhcc-CHHHHHHhhc---cCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCc
Confidence            1111    123566776643 4444443221   256788889999999999999998   9999999999999999999


Q ss_pred             EEEeecCCccccCCCC-------CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCC
Q 042435          263 AFVADFGTVRLLDVDS-------SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSG  335 (412)
Q Consensus       263 ~kl~DfGla~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~  335 (412)
                      ++|+|||+++......       .......||+.|+|||+..+..++.++|||||||++|||++|+.||.........  
T Consensus       165 ~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~--  242 (294)
T PHA02882        165 GYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNL--  242 (294)
T ss_pred             EEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHH--
Confidence            9999999998653321       1112346999999999999999999999999999999999999999743110000  


Q ss_pred             CcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          336 PKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                      ......+.......+..  ........+.+++..||+.+|++||++.++.+.|+
T Consensus       243 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~~~~  294 (294)
T PHA02882        243 IHAAKCDFIKRLHEGKI--KIKNANKFIYDFIECVTKLSYEEKPDYDALIKIFD  294 (294)
T ss_pred             HHHhHHHHHHHhhhhhh--ccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHHhhC
Confidence            00000111111111100  00111234789999999999999999999998763

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=3.5e-35  Score=275.68  Aligned_cols=235  Identities=21%  Similarity=0.272  Sum_probs=179.4

Q ss_pred             cCcccceeeeecCceEEEEEEeC------CCcEEEEEec----------------------cCCccccceEEEecCceEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~  194 (412)
                      ++|++...||+|+||.||+|..+      +.+.||+|.+                      +|+++......+...+..+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   84 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY   84 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce
Confidence            56888899999999999999863      3567999965                      3455555555677778899


Q ss_pred             EEEEeccCCceeeeeccCccc------ccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeec
Q 042435          195 FIYEYMERGSLFCVLRDDDEA------IELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADF  268 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~------~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~Df  268 (412)
                      +||||+++|+|.+++......      ..+++..+..++.|++.||+|||+.   +++||||||+||+++.++.++++||
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~~~  161 (275)
T cd05046          85 MILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNA---RFVHRDLAARNCLVSSQREVKVSLL  161 (275)
T ss_pred             EEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhc---CcccCcCccceEEEeCCCcEEEccc
Confidence            999999999999998754421      1589999999999999999999998   9999999999999999999999999


Q ss_pred             CCccccCCCC-CCcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhh
Q 042435          269 GTVRLLDVDS-SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQ  346 (412)
Q Consensus       269 Gla~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~  346 (412)
                      |+++...... .......++..|+|||.+.+..++.++||||||+++||+++ |..||....       ...........
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~-------~~~~~~~~~~~  234 (275)
T cd05046         162 SLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLS-------DEEVLNRLQAG  234 (275)
T ss_pred             ccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccc-------hHHHHHHHHcC
Confidence            9987543221 12233356778999999988888999999999999999999 788875221       11111111111


Q ss_pred             ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      ....+....   ....+.+++.+||+.+|++|||+.|+++.|.+
T Consensus       235 ~~~~~~~~~---~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~~  275 (275)
T cd05046         235 KLELPVPEG---CPSRLYKLMTRCWAVNPKDRPSFSELVSALGE  275 (275)
T ss_pred             CcCCCCCCC---CCHHHHHHHHHHcCCCcccCCCHHHHHHHhcC
Confidence            111111111   12248889999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-35  Score=279.52  Aligned_cols=232  Identities=23%  Similarity=0.352  Sum_probs=181.3

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEe
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      .++|++.+.||+|+||.||+|... +++.+|+|.+                     +|+++......+..+...++||||
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEF   83 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeec
Confidence            467899999999999999999874 6899999964                     466666667777888899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++++|.+++.....  .+++.....++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||++........
T Consensus        84 ~~~~~L~~~~~~~~~--~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~  158 (280)
T cd06611          84 CDGGALDSIMLELER--GLTEPQIRYVCRQMLEALNFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQ  158 (280)
T ss_pred             cCCCcHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEECCCCCEEEccCccchhhccccc
Confidence            999999998865432  489999999999999999999998   999999999999999999999999999876544333


Q ss_pred             Cccccccccccccccccc-----CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          280 NRTLQAGTYGYIALELVY-----TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~-----~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      ......+++.|+|||.+.     ...++.++||||||+++|||++|+.||....       .......+.. ...+.. .
T Consensus       159 ~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~-------~~~~~~~~~~-~~~~~~-~  229 (280)
T cd06611         159 KRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELN-------PMRVLLKILK-SEPPTL-D  229 (280)
T ss_pred             ccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCC-------HHHHHHHHhc-CCCCCc-C
Confidence            334456899999999874     3457789999999999999999999986321       1111111111 111110 0


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ........+.+++.+||+.+|++||++.+++++
T Consensus       230 ~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (280)
T cd06611         230 QPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKH  262 (280)
T ss_pred             CcccCCHHHHHHHHHHhccChhhCcCHHHHhcC
Confidence            001112247789999999999999999999876

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.8e-36  Score=277.64  Aligned_cols=239  Identities=22%  Similarity=0.266  Sum_probs=175.3

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEe-----------------ccCCccccceEEEecC-----ceEEEEEEec
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKK-----------------LHHSETEDSAFVVYSP-----QCMFFIYEYM  200 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~-----------------l~~~~~~~~~~~~~~~-----~~~~lv~ey~  200 (412)
                      .|...+++|.|+||.||+|... +++.||||+                 ++|+|+++....+...     -+..+|||||
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVleym  104 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEYM  104 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHhc
Confidence            4666789999999999999874 479999995                 4799998877664432     2456899999


Q ss_pred             cCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC-CcEEEeecCCccccCCCC
Q 042435          201 ERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN-LEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       201 ~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~-~~~kl~DfGla~~~~~~~  278 (412)
                      |. +|.++++... ....++...+.-+..|+.+||+|||+.   +|+||||||.|+|+|.+ +.+||||||.|+.+..+.
T Consensus       105 P~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~---~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~e  180 (364)
T KOG0658|consen  105 PE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSH---GICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGE  180 (364)
T ss_pred             hH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhc---CcccCCCChheEEEcCCCCeEEeccCCcceeeccCC
Confidence            87 8998887421 112466667778999999999999998   99999999999999965 999999999999887665


Q ss_pred             CCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcchhh-------H
Q 042435          279 SNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKIMLI-------D  342 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~~~~-------~  342 (412)
                      .+ .....|..|+|||.+.+. .|+.+.||||.||++.||+-|+.-|........        .......+.       +
T Consensus       181 pn-iSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~  259 (364)
T KOG0658|consen  181 PN-ISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYTE  259 (364)
T ss_pred             Cc-eeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCccccc
Confidence            55 344678999999998865 699999999999999999999988763211100        000000000       0


Q ss_pred             HhhhccCCccc-h-hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          343 ILYQRLSPPIN-Q-KIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       343 ~~~~~~~~~~~-~-~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+.+.+... . ..........+++.+++..+|.+|.++.|++.+
T Consensus       260 ~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h  306 (364)
T KOG0658|consen  260 FKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALAH  306 (364)
T ss_pred             ccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhcc
Confidence            01111111100 0 011122347899999999999999999998765

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=2.8e-35  Score=276.70  Aligned_cols=218  Identities=23%  Similarity=0.281  Sum_probs=166.9

Q ss_pred             eeeecCceEEEEEEeCC-------------------------CcEEEEEec---------------------cCCccccc
Q 042435          150 CIGTGGYDSVYKAELPD-------------------------GKVVALKKL---------------------HHSETEDS  183 (412)
Q Consensus       150 ~lG~G~~g~Vy~~~~~~-------------------------~~~vAvK~l---------------------~~~~~~~~  183 (412)
                      .||+|+||.||+|.+..                         ...||+|.+                     +|+++...
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            58999999999996421                         235888854                     57778888


Q ss_pred             eEEEecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC--
Q 042435          184 AFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL--  261 (412)
Q Consensus       184 ~~~~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~--  261 (412)
                      ...+......++||||+++|+|..++.....  .+++..++.++.|+++||+|||+.   +|+||||||+||+++.++  
T Consensus        82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~Nill~~~~~~  156 (274)
T cd05076          82 HGVCVRGSENIMVEEFVEHGPLDVCLRKEKG--RVPVAWKITVAQQLASALSYLEDK---NLVHGNVCAKNILLARLGLA  156 (274)
T ss_pred             EEEEEeCCceEEEEecCCCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHcC---CccCCCCCcccEEEeccCcc
Confidence            8888888899999999999999988865332  488999999999999999999988   999999999999997543  


Q ss_pred             -----cEEEeecCCccccCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHH-hCCCCcccccccccCC
Q 042435          262 -----EAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVL-MGTHPGELLLSLSSSS  334 (412)
Q Consensus       262 -----~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~ell-tg~~P~~~~~~~~~~~  334 (412)
                           .+|++|||++......    ....++..|+|||.+.+ ..++.++||||||+++||++ +|+.||....      
T Consensus       157 ~~~~~~~kl~d~g~~~~~~~~----~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~------  226 (274)
T cd05076         157 EGTSPFIKLSDPGVSFTALSR----EERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVPLKERT------  226 (274)
T ss_pred             cCccceeeecCCccccccccc----cccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCccccC------
Confidence                 3799999987643221    22356788999998865 56889999999999999985 6899886321      


Q ss_pred             CCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          335 GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                       . .............+.  ..   ...+.+++.+||+.+|++|||+.++++.|.
T Consensus       227 -~-~~~~~~~~~~~~~~~--~~---~~~~~~li~~cl~~~p~~Rps~~~il~~L~  274 (274)
T cd05076         227 -P-SEKERFYEKKHRLPE--PS---CKELATLISQCLTYEPTQRPSFRTILRDLT  274 (274)
T ss_pred             -h-HHHHHHHHhccCCCC--CC---ChHHHHHHHHHcccChhhCcCHHHHHHhhC
Confidence             1 111122222221111  11   123788999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=2.9e-35  Score=277.28  Aligned_cols=232  Identities=23%  Similarity=0.324  Sum_probs=174.8

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ++|++.+.||+|+||.||+|... +|+.||+|+++                       |+++......+..++..+++||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e   80 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICME   80 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhh
Confidence            47889999999999999999774 69999999753                       3444445555677888999999


Q ss_pred             eccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          199 YMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       199 y~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      |++ |+|.+++.... ....+++..+..++.|++.||+|||+++  +++||||||+||+++.++.+||+|||+++.....
T Consensus        81 ~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~  157 (283)
T cd06617          81 VMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKL--SVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDS  157 (283)
T ss_pred             hhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecccccccccc
Confidence            996 68877765421 2235899999999999999999999753  7999999999999999999999999998865322


Q ss_pred             CCCcccccccccccccccccC----cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccc
Q 042435          278 SSNRTLQAGTYGYIALELVYT----MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN  353 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~----~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (412)
                      . ......++..|+|||.+.+    ..++.++|+||||+++|||++|+.||....      ............ ..+..+
T Consensus       158 ~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~~~~-~~~~~~  229 (283)
T cd06617         158 V-AKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWK------TPFQQLKQVVEE-PSPQLP  229 (283)
T ss_pred             c-ccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccc------cCHHHHHHHHhc-CCCCCC
Confidence            1 1233467889999998864    446889999999999999999999986321      011111222211 111111


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..  .....+.+++.+||..+|++||++.+++++
T Consensus       230 ~~--~~~~~l~~li~~~l~~~p~~Rp~~~~il~~  261 (283)
T cd06617         230 AE--KFSPEFQDFVNKCLKKNYKERPNYPELLQH  261 (283)
T ss_pred             cc--ccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            11  112347889999999999999999999874

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.7e-35  Score=290.90  Aligned_cols=239  Identities=22%  Similarity=0.224  Sum_probs=178.9

Q ss_pred             hcCcccceeeeecCceEEEEEEeC---CCcEEEEEec----------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP---DGKVVALKKL----------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~---~~~~vAvK~l----------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ..+|++.+.||+|+||.||++...   .++.||+|.+                +|+++......+......+++|||+. 
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-  169 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGKTPGREIDILKTISHRAIINLIHAYRWKSTVCMVMPKYK-  169 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccccccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEehhcC-
Confidence            357999999999999999999653   3678999954                57777777777777889999999995 


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC--
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN--  280 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~--  280 (412)
                      ++|.+++....   .+++..++.++.|++.||+|||++   +|+||||||+|||++.++.++|+|||+++........  
T Consensus       170 ~~l~~~l~~~~---~l~~~~~~~i~~ql~~aL~~LH~~---givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~  243 (392)
T PHA03207        170 CDLFTYVDRSG---PLPLEQAITIQRRLLEALAYLHGR---GIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQ  243 (392)
T ss_pred             CCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEccCccccccCccccccc
Confidence            68888774332   589999999999999999999998   9999999999999999999999999999765443221  


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccc---------------cCCCCc---chhhH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS---------------SSSGPK---IMLID  342 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~---------------~~~~~~---~~~~~  342 (412)
                      .....||+.|+|||++.+..++.++|||||||++|||++|+.||.......               ....+.   .....
T Consensus       244 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~  323 (392)
T PHA03207        244 CYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCK  323 (392)
T ss_pred             ccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHH
Confidence            234579999999999999999999999999999999999999985321100               000000   00000


Q ss_pred             Hhh---hccCCcc--chhh--HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          343 ILY---QRLSPPI--NQKI--IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       343 ~~~---~~~~~~~--~~~~--~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...   ....++.  +...  ......+.+++.+|+..||++|||+.|++++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~  375 (392)
T PHA03207        324 HFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSL  375 (392)
T ss_pred             HHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHhhC
Confidence            000   0001100  0000  0112346788999999999999999999987

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=4.9e-35  Score=275.29  Aligned_cols=226  Identities=27%  Similarity=0.395  Sum_probs=178.7

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------------cCCccccceEEEecCceEEEEEEec
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      -|+..+.||+|+||.||+|.. .+++.||+|.+                      +|+++......+..++..++||||+
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL   84 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeC
Confidence            367778999999999999976 46899999964                      3455555555677788899999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++++|.+++...    .+++.....++.|++.|+.|||+.   +++|+||||+||+++.++.++++|||+++........
T Consensus        85 ~~~~l~~~i~~~----~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~  157 (277)
T cd06641          85 GGGSALDLLEPG----PLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK  157 (277)
T ss_pred             CCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHccC---CeecCCCCHHhEEECCCCCEEEeecccceecccchhh
Confidence            999999888643    489999999999999999999998   9999999999999999999999999998766443333


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      .....++..|+|||.+.+..++.++|+|||||++|||++|..||....       . ......+.....+....   ...
T Consensus       158 ~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~-------~-~~~~~~~~~~~~~~~~~---~~~  226 (277)
T cd06641         158 RNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELH-------P-MKVLFLIPKNNPPTLEG---NYS  226 (277)
T ss_pred             hccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccc-------h-HHHHHHHhcCCCCCCCc---ccC
Confidence            334467889999999988888999999999999999999999986321       1 11111111111111111   112


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..+.+++.+||+.+|++||++.+++++
T Consensus       227 ~~~~~~i~~~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         227 KPLKEFVEACLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            347789999999999999999999996

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=2.6e-35  Score=275.53  Aligned_cols=228  Identities=24%  Similarity=0.330  Sum_probs=173.7

Q ss_pred             eeeeecCceEEEEEEeCC-------CcEEEEEec----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          149 YCIGTGGYDSVYKAELPD-------GKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~-------~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +.||+|+||.||+|...+       ++.+|+|.+                      +|+++......+...+..++||||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            368999999999997642       257888854                      456666666667778889999999


Q ss_pred             ccCCceeeeeccCc----ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC-----cEEEeecCC
Q 042435          200 MERGSLFCVLRDDD----EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL-----EAFVADFGT  270 (412)
Q Consensus       200 ~~~gsL~~~l~~~~----~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~-----~~kl~DfGl  270 (412)
                      +++|+|.+++....    ....++|.+++.++.|++.||+|||+.   +++|+||||+||+++.+.     .++++|||+
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~  157 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQM---HFIHRDLAARNCLVSEKGYDADRVVKIGDFGL  157 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhC---CcccCCCChheEEEecCCCCCCcceEECCccc
Confidence            99999999986532    122478999999999999999999988   999999999999999877     899999999


Q ss_pred             ccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhc
Q 042435          271 VRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQR  347 (412)
Q Consensus       271 a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~  347 (412)
                      ++.......  ......++..|+|||++.+..++.++||||||+++|||+| |+.||....        .......+...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~--------~~~~~~~~~~~  229 (269)
T cd05044         158 ARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALN--------NQEVLQHVTAG  229 (269)
T ss_pred             ccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccC--------HHHHHHHHhcC
Confidence            876533221  1122345678999999999999999999999999999998 999986221        11111222111


Q ss_pred             cCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          348 LSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      ........   ....+.+++.+||..+|++||++.++.+.|++
T Consensus       230 ~~~~~~~~---~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  269 (269)
T cd05044         230 GRLQKPEN---CPDKIYQLMTNCWAQDPSERPTFDRIQEILQN  269 (269)
T ss_pred             CccCCccc---chHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            11111111   12347899999999999999999999999864

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=2.1e-35  Score=276.36  Aligned_cols=229  Identities=22%  Similarity=0.270  Sum_probs=166.6

Q ss_pred             eeeecCceEEEEEEeCC---CcEEEEEec----------------------cCCccccceEEEecCceEEEEEEeccCCc
Q 042435          150 CIGTGGYDSVYKAELPD---GKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEYMERGS  204 (412)
Q Consensus       150 ~lG~G~~g~Vy~~~~~~---~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~gs  204 (412)
                      .||+|+||.||+|...+   ...+|+|.+                      +|+++......+......++||||+++|+
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD   81 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence            58999999999996543   457888854                      46666666667778888999999999999


Q ss_pred             eeeeeccCcc--cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC--C
Q 042435          205 LFCVLRDDDE--AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS--N  280 (412)
Q Consensus       205 L~~~l~~~~~--~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~--~  280 (412)
                      |.+++.....  ....++.....++.|++.||+|||+.   +|+||||||+||++++++++||+|||+++.......  .
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~  158 (269)
T cd05042          82 LKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQA---DFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYIT  158 (269)
T ss_pred             HHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhc---CEecccccHhheEecCCCcEEEeccccccccccchheec
Confidence            9999876432  12356788899999999999999998   999999999999999999999999999875432211  1


Q ss_pred             ccccccccccccccccc-------CcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhc-cCCc
Q 042435          281 RTLQAGTYGYIALELVY-------TMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQR-LSPP  351 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~-------~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  351 (412)
                      .....++..|+|||+..       ...++.++|||||||++|||++ |..||....       +........... ...+
T Consensus       159 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~-------~~~~~~~~~~~~~~~~~  231 (269)
T cd05042         159 KDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLS-------DEQVLKQVVREQDIKLP  231 (269)
T ss_pred             cCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCC-------HHHHHHHHhhccCccCC
Confidence            12234567899999864       2356789999999999999999 778876321       111111111111 1111


Q ss_pred             cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                      .+.........+.+++..|| .||++|||++||++.|.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         232 KPQLDLKYSDRWYEVMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             CCcccccCCHHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence            11111112233567888898 49999999999999874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=4.2e-35  Score=271.93  Aligned_cols=227  Identities=24%  Similarity=0.306  Sum_probs=176.9

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEecc--------------------------CCccccceEEEecCceEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH--------------------------HSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~--------------------------~~~~~~~~~~~~~~~~~~lv  196 (412)
                      +|+..+.||+|+||.||+|... +++.||+|.+.                          |+++......+......+++
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIF   80 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEE
Confidence            3677789999999999999875 78999999653                          44455555567777889999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      +||+++++|.+++....   .+++..+..++.|++.||+|||+.   +++|+||+|+||+++.++.+||+|||++.....
T Consensus        81 ~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~  154 (258)
T cd06632          81 LELVPGGSLAKLLKKYG---SFPEPVIRLYTRQILLGLEYLHDR---NTVHRDIKGANILVDTNGVVKLADFGMAKQVVE  154 (258)
T ss_pred             EEecCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccceeccc
Confidence            99999999999887543   488999999999999999999998   999999999999999999999999999876543


Q ss_pred             CCCCcccccccccccccccccCcc-cCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMV-VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~-~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      .. ......|+..|+|||.+.... ++.++|+||||+++|+|++|+.||....       ..............+..+..
T Consensus       155 ~~-~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~-------~~~~~~~~~~~~~~~~~~~~  226 (258)
T cd06632         155 FS-FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLE-------GVAAVFKIGRSKELPPIPDH  226 (258)
T ss_pred             cc-cccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCc-------HHHHHHHHHhcccCCCcCCC
Confidence            32 223456889999999987766 8999999999999999999999986321       11111111110111111111


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                         ....+.+++.+||+.+|++||++.+++.+
T Consensus       227 ---~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  255 (258)
T cd06632         227 ---LSDEAKDFILKCLQRDPSLRPTAAELLEH  255 (258)
T ss_pred             ---cCHHHHHHHHHHhhcCcccCcCHHHHhcC
Confidence               12337789999999999999999999864

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=4.4e-35  Score=272.52  Aligned_cols=233  Identities=24%  Similarity=0.316  Sum_probs=179.1

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEe--cCceEEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVY--SPQCMFFIY  197 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~--~~~~~~lv~  197 (412)
                      +|++.+.||+|+||.||++.. .+++.+|+|.++                       |+++......+.  .....+++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            478889999999999999965 568899999753                       444444333332  345689999


Q ss_pred             EeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCC--CCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          198 EYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDC--TPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~--~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      ||+++++|.+++.... ....+++...+.++.|++.||+|||..+  ..+++|+||||+||++++++.+|++|||++...
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~  160 (265)
T cd08217          81 EYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKIL  160 (265)
T ss_pred             hhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccc
Confidence            9999999999886532 2236899999999999999999999332  239999999999999999999999999999876


Q ss_pred             CCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          275 DVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       275 ~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      ...........++..|+|||.+.+..++.++|+||||+++|+|++|+.||....        .....+.+.....+..+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~  232 (265)
T cd08217         161 GHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARN--------QLQLASKIKEGKFRRIPY  232 (265)
T ss_pred             cCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcC--------HHHHHHHHhcCCCCCCcc
Confidence            554432334568999999999988889999999999999999999999987321        111222222222222111


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                         .....+.+++.+|++.+|++||++.+|+++
T Consensus       233 ---~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~  262 (265)
T cd08217         233 ---RYSSELNEVIKSMLNVDPDKRPSTEELLQL  262 (265)
T ss_pred             ---ccCHHHHHHHHHHccCCcccCCCHHHHhhC
Confidence               222348899999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=3.9e-35  Score=276.19  Aligned_cols=241  Identities=21%  Similarity=0.283  Sum_probs=179.6

Q ss_pred             cCcccceeeeecCceEEEEEEeC-----CCcEEEEEeccCC----------------------ccccceEEEec--CceE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-----DGKVVALKKLHHS----------------------ETEDSAFVVYS--PQCM  193 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-----~~~~vAvK~l~~~----------------------~~~~~~~~~~~--~~~~  193 (412)
                      +.|+..+.||+|+||.||+|.+.     +++.+|+|.++..                      ++......+..  ....
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~   83 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSL   83 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCce
Confidence            35677789999999999999763     3689999977533                      33333333444  5578


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      +++|||+++++|.+++.....  .+++..+..++.|++.||+|||+.   +++|+||||+||+++.++.++|+|||.+..
T Consensus        84 ~lv~e~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~  158 (284)
T cd05038          84 RLIMEYLPSGSLRDYLQRHRD--QINLKRLLLFSSQICKGMDYLGSQ---RYIHRDLAARNILVESEDLVKISDFGLAKV  158 (284)
T ss_pred             EEEEecCCCCCHHHHHHhCcc--ccCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccccccc
Confidence            999999999999999876542  489999999999999999999998   999999999999999999999999999987


Q ss_pred             cCCCCCCc---ccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccccccc----CC---CCcchhhHH
Q 042435          274 LDVDSSNR---TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS----SS---GPKIMLIDI  343 (412)
Q Consensus       274 ~~~~~~~~---~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~----~~---~~~~~~~~~  343 (412)
                      ........   ....++..|+|||...+..++.++||||||+++|||+||+.|+........    ..   .....+.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (284)
T cd05038         159 LPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLEL  238 (284)
T ss_pred             cccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHH
Confidence            65322111   122345679999999888899999999999999999999999763211100    00   001111222


Q ss_pred             hhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          344 LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      +......+.+.   .....+.+++.+||+.+|++|||+.||+++|+++
T Consensus       239 ~~~~~~~~~~~---~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         239 LKEGERLPRPP---SCPDEVYDLMKLCWEAEPQDRPSFADLILIVDRL  283 (284)
T ss_pred             HHcCCcCCCCc---cCCHHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence            22222221111   1223488999999999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=5.3e-35  Score=273.80  Aligned_cols=235  Identities=20%  Similarity=0.298  Sum_probs=180.9

Q ss_pred             HHHHHHhhcCcccceee--eecCceEEEEEEe-CCCcEEEEEecc-----------------CCccccceEEEecCceEE
Q 042435          135 YENLIDATEYFHIRYCI--GTGGYDSVYKAEL-PDGKVVALKKLH-----------------HSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       135 ~~~l~~~~~~f~~~~~l--G~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------~~~~~~~~~~~~~~~~~~  194 (412)
                      ..+.....++|++.+.+  |+|+||.||++.. .+++.+|+|...                 |+++......+...+..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~   85 (267)
T PHA03390          6 LSELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAIEPMVHQLMKDNPNFIKLYYSVTTLKGHV   85 (267)
T ss_pred             HHHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchhhHHHHHHhhcCCCEEEEEEEEecCCeeE
Confidence            34556666778887776  9999999999976 468889999653                 444444555567788899


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC-cEEEeecCCccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL-EAFVADFGTVRL  273 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~-~~kl~DfGla~~  273 (412)
                      +||||+++|+|.+++....   .++|.++..++.|+++||+|||+.   +++||||||+||+++.++ .++|+|||+++.
T Consensus        86 iv~e~~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~  159 (267)
T PHA03390         86 LIMDYIKDGDLFDLLKKEG---KLSEAEVKKIIRQLVEALNDLHKH---NIIHNDIKLENVLYDRAKDRIYLCDYGLCKI  159 (267)
T ss_pred             EEEEcCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEeCCCCeEEEecCcccee
Confidence            9999999999999987653   589999999999999999999998   999999999999999888 999999999876


Q ss_pred             cCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccc
Q 042435          274 LDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN  353 (412)
Q Consensus       274 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (412)
                      ....    ....++..|+|||++.+..++.++||||||+++|||++|+.||.....      ............ .... 
T Consensus       160 ~~~~----~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~------~~~~~~~~~~~~-~~~~-  227 (267)
T PHA03390        160 IGTP----SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDED------EELDLESLLKRQ-QKKL-  227 (267)
T ss_pred             cCCC----ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCc------chhhHHHHHHhh-cccC-
Confidence            5432    223588999999999988899999999999999999999999872210      111111111111 1110 


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCC-HHHHHHH
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPT-MQRISQE  387 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs-~~evl~~  387 (412)
                      .........+.+++.+||+.||.+||+ ++|++++
T Consensus       228 ~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~h  262 (267)
T PHA03390        228 PFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIKH  262 (267)
T ss_pred             CcccccCHHHHHHHHHHhccChhhCCchHHHHhcC
Confidence            111122334889999999999999996 6988753

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6.9e-36  Score=296.99  Aligned_cols=236  Identities=24%  Similarity=0.381  Sum_probs=189.5

Q ss_pred             cccceeeeecCceEEEEEEe-CCC----cEEEEEec----------------------cCCccccceEEEecCceEEEEE
Q 042435          145 FHIRYCIGTGGYDSVYKAEL-PDG----KVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~-~~~----~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ....++||+|+||+||||.| +.|    -+||+|.+                      +|+++.+..++|.... +.||+
T Consensus       698 lkk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvt  776 (1177)
T KOG1025|consen  698 LKKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVT  776 (1177)
T ss_pred             hhhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHH
Confidence            34457899999999999977 344    46888854                      5777777777777665 88999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      +|||.|+|.++++.++.  .+.-...+.|..|||+||.|||.+   .++||||..+|||+.+-..+||.|||+++.+..+
T Consensus       777 q~mP~G~LlDyvr~hr~--~igsq~lLnw~~QIAkgM~YLe~q---rlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d  851 (1177)
T KOG1025|consen  777 QLMPLGCLLDYVREHRD--NIGSQDLLNWCYQIAKGMKYLEEQ---RLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPD  851 (1177)
T ss_pred             HhcccchHHHHHHHhhc--cccHHHHHHHHHHHHHHHHHHHhc---chhhhhhhhhheeecCCCeEEEEecchhhccCcc
Confidence            99999999999998764  477788999999999999999999   9999999999999999999999999999988776


Q ss_pred             CCCccccc--ccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          278 SSNRTLQA--GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       278 ~~~~~~~~--gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      ........  -.+.|||-|.+....|+.++|||||||++||++| |..|++..        +...+.+.+....+-+-++
T Consensus       852 ~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi--------~~~eI~dlle~geRLsqPp  923 (1177)
T KOG1025|consen  852 EKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGI--------PAEEIPDLLEKGERLSQPP  923 (1177)
T ss_pred             cccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCC--------CHHHhhHHHhccccCCCCC
Confidence            55443333  3578999999999999999999999999999999 99998743        1222334443332222112


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCCC
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKG  397 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~~  397 (412)
                         -....+..++.+||..|+..||+++++...+.++......
T Consensus       924 ---iCtiDVy~~mvkCwmid~~~rp~fkel~~~fs~~ardpqr  963 (1177)
T KOG1025|consen  924 ---ICTIDVYMVMVKCWMIDADSRPTFKELAEEFSRMARDPQR  963 (1177)
T ss_pred             ---CccHHHHHHHHHHhccCcccCccHHHHHHHHHHHhcCcce
Confidence               2334488899999999999999999999999887766554

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=5.3e-35  Score=273.09  Aligned_cols=227  Identities=25%  Similarity=0.347  Sum_probs=177.0

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEecc------------------------------CCccccceEEEecCce
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH------------------------------HSETEDSAFVVYSPQC  192 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~------------------------------~~~~~~~~~~~~~~~~  192 (412)
                      .|.+...||+|+||.||+|.. .+++.+|+|.+.                              |+++......+...+.
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADH   80 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCc
Confidence            367788999999999999976 468899999553                              4455555556677888


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .++++||+++++|.+++....   .+++..+..++.|++.||+|||+.   +++||||+|+||++++++.++|+|||.++
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~---~l~~~~~~~~~~~l~~~l~~lH~~---~ivH~di~p~nil~~~~~~~~l~dfg~~~  154 (267)
T cd06628          81 LNIFLEYVPGGSVAALLNNYG---AFEETLVRNFVRQILKGLNYLHNR---GIIHRDIKGANILVDNKGGIKISDFGISK  154 (267)
T ss_pred             cEEEEEecCCCCHHHHHHhcc---CccHHHHHHHHHHHHHHHHHHHhc---CcccccCCHHHEEEcCCCCEEecccCCCc
Confidence            999999999999999987643   488899999999999999999998   99999999999999999999999999988


Q ss_pred             ccCCCCC------CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhh
Q 042435          273 LLDVDSS------NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ  346 (412)
Q Consensus       273 ~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~  346 (412)
                      .......      ......|+..|+|||.+.+..++.++|+||||+++|||++|+.||....       .......... 
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-------~~~~~~~~~~-  226 (267)
T cd06628         155 KLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCT-------QLQAIFKIGE-  226 (267)
T ss_pred             ccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCcc-------HHHHHHHHhc-
Confidence            6643211      1123457889999999988889999999999999999999999987321       1111111111 


Q ss_pred             ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+..+..   ....+.+++.+||+.||.+||++.|++++
T Consensus       227 ~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rp~~~~il~~  264 (267)
T cd06628         227 NASPEIPSN---ISSEAIDFLEKTFEIDHNKRPTAAELLKH  264 (267)
T ss_pred             cCCCcCCcc---cCHHHHHHHHHHccCCchhCcCHHHHhhC
Confidence            111111111   22347889999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=5.3e-35  Score=271.60  Aligned_cols=218  Identities=22%  Similarity=0.311  Sum_probs=166.7

Q ss_pred             eeeeecCceEEEEEEeCCCc-----------EEEEEec--------------------cCCccccceEEEecCceEEEEE
Q 042435          149 YCIGTGGYDSVYKAELPDGK-----------VVALKKL--------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~~~-----------~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      +.||+|+||.||+|...+..           .+++|.+                    +|+++......+.. ...++||
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv~   79 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVR-DENIMVE   79 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcchhheeeEEec-CCcEEEE
Confidence            36899999999999875432           5777754                    45556555555666 6789999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC-------cEEEeecCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL-------EAFVADFGT  270 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~-------~~kl~DfGl  270 (412)
                      ||+++|+|.+++.....  .+++..++.++.|++.||+|||++   +++||||||+||+++.++       .+||+|||+
T Consensus        80 e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~  154 (259)
T cd05037          80 EYVKFGPLDVFLHREKN--NVSLHWKLDVAKQLASALHYLEDK---KLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGI  154 (259)
T ss_pred             EcCCCCcHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHhhC---CeecccCccceEEEecCccccCCceeEEeCCCCc
Confidence            99999999998876432  488999999999999999999998   999999999999999887       799999999


Q ss_pred             ccccCCCCCCcccccccccccccccccCc--ccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhc
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYTM--VVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQR  347 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~  347 (412)
                      +.....    .....++..|+|||++.+.  .++.++||||||+++||+++ |..||....       ... ........
T Consensus       155 a~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~-------~~~-~~~~~~~~  222 (259)
T cd05037         155 PITVLS----REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLS-------SSE-KERFYQDQ  222 (259)
T ss_pred             cccccc----ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCC-------chh-HHHHHhcC
Confidence            986543    2223567789999998776  78999999999999999999 577765321       111 11111111


Q ss_pred             cCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          348 LSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                      ...+.+.     ...+.+++.+||..+|.+|||+.|+++.|+
T Consensus       223 ~~~~~~~-----~~~~~~li~~~l~~~p~~Rpt~~~il~~l~  259 (259)
T cd05037         223 HRLPMPD-----CAELANLINQCWTYDPTKRPSFRAILRDLN  259 (259)
T ss_pred             CCCCCCC-----chHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence            1111111     134889999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=6e-35  Score=272.69  Aligned_cols=228  Identities=21%  Similarity=0.265  Sum_probs=171.6

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEecc--------------------------CCccccceEEEec--CceE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH--------------------------HSETEDSAFVVYS--PQCM  193 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~--------------------------~~~~~~~~~~~~~--~~~~  193 (412)
                      ++|++.+.||+|+||.||+|.. .+++.||+|.++                          |+++......+.+  ....
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            5789999999999999999976 458999999764                          2222222332333  3467


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      +++|||+++++|.+++....   .+++...+.++.|++.||+|||+.   +++|+||||+||+++.++.++|+|||+++.
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~  155 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYG---ALTENVTRKYTRQILEGVSYLHSN---MIVHRDIKGANILRDSVGNVKLGDFGASKR  155 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEecCCCCEEECcCccccc
Confidence            89999999999999886543   478888999999999999999998   999999999999999999999999999876


Q ss_pred             cCCCC---CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCC
Q 042435          274 LDVDS---SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP  350 (412)
Q Consensus       274 ~~~~~---~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (412)
                      .....   .......|+..|+|||.+.+..++.++||||||+++|||++|+.||....       ..............+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~-------~~~~~~~~~~~~~~~  228 (265)
T cd06652         156 LQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFE-------AMAAIFKIATQPTNP  228 (265)
T ss_pred             cccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccc-------hHHHHHHHhcCCCCC
Confidence            53211   11223458889999999988889999999999999999999999986321       111111111111111


Q ss_pred             ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       351 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..+   ......+.+++.+|+. +|++||+++|++++
T Consensus       229 ~~~---~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~~  261 (265)
T cd06652         229 VLP---PHVSDHCRDFLKRIFV-EAKLRPSADELLRH  261 (265)
T ss_pred             CCc---hhhCHHHHHHHHHHhc-ChhhCCCHHHHhcC
Confidence            111   1222347788888985 99999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=1.8e-35  Score=275.40  Aligned_cols=219  Identities=20%  Similarity=0.307  Sum_probs=167.8

Q ss_pred             eeeeecCceEEEEEEeCC--------CcEEEEEe---------------------ccCCccccceEEEecCceEEEEEEe
Q 042435          149 YCIGTGGYDSVYKAELPD--------GKVVALKK---------------------LHHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~--------~~~vAvK~---------------------l~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +.||+|+||.||+|....        ...+|+|.                     ++|+++......+..++..++||||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   80 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEY   80 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEec
Confidence            368999999999997632        23477774                     3577777777778888889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCc--------EEEeecCCc
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLE--------AFVADFGTV  271 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~--------~kl~DfGla  271 (412)
                      +++|+|.++++....  .+++..++.++.|++.||+|||+.   +|+||||||+||+++.++.        ++++|||++
T Consensus        81 ~~~g~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~  155 (258)
T cd05078          81 VKFGSLDTYLKKNKN--LINISWKLEVAKQLAWALHFLEDK---GLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGIS  155 (258)
T ss_pred             CCCCcHHHHHhcCCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEEecccccccCCCceEEecccccc
Confidence            999999999876542  489999999999999999999998   9999999999999987665        589999988


Q ss_pred             cccCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCC-CCcccccccccCCCCcchhhHHhhhccC
Q 042435          272 RLLDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGT-HPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       272 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~-~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      .....    .....++..|+|||++.+ ..++.++||||||+++|||++|. .|+...        ..............
T Consensus       156 ~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~--------~~~~~~~~~~~~~~  223 (258)
T cd05078         156 ITVLP----KEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDKPLSAL--------DSQKKLQFYEDRHQ  223 (258)
T ss_pred             cccCC----chhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCCChhhc--------cHHHHHHHHHcccc
Confidence            65432    223467889999999876 45789999999999999999985 554421        11111112222111


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                      .+  ...   ...+.+++.+||+.||++|||++++++.|+
T Consensus       224 ~~--~~~---~~~~~~li~~~l~~~p~~Rps~~~il~~l~  258 (258)
T cd05078         224 LP--APK---WTELANLINQCMDYEPDFRPSFRAIIRDLN  258 (258)
T ss_pred             CC--CCC---cHHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence            11  111   124789999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=6.1e-35  Score=272.59  Aligned_cols=218  Identities=21%  Similarity=0.202  Sum_probs=166.7

Q ss_pred             eeeeecCceEEEEEEeCC-------------CcEEEEEec---------------------cCCccccceEEEecCceEE
Q 042435          149 YCIGTGGYDSVYKAELPD-------------GKVVALKKL---------------------HHSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~-------------~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~  194 (412)
                      +.||+|+||.||+|.+.+             ...||+|.+                     +|+++......+......+
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~   80 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI   80 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE
Confidence            358999999999997532             235888853                     5777777777788888899


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCc-------EEEee
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLE-------AFVAD  267 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~-------~kl~D  267 (412)
                      +||||+++|+|..++....  ..+++..+..++.|+++||+|||+.   +|+||||||+|||++.++.       ++++|
T Consensus        81 lv~e~~~~~~l~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d  155 (262)
T cd05077          81 MVEEFVEFGPLDLFMHRKS--DVLTTPWKFKVAKQLASALSYLEDK---DLVHGNVCTKNILLAREGIDGECGPFIKLSD  155 (262)
T ss_pred             EEEecccCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHhhhC---CeECCCCCcccEEEecCCccCCCCceeEeCC
Confidence            9999999999988876433  2489999999999999999999998   9999999999999986654       89999


Q ss_pred             cCCccccCCCCCCccccccccccccccccc-CcccCcccccHHHHHHHHHHH-hCCCCcccccccccCCCCcchhhHHhh
Q 042435          268 FGTVRLLDVDSSNRTLQAGTYGYIALELVY-TMVVTEKCVIYSFGVVALEVL-MGTHPGELLLSLSSSSGPKIMLIDILY  345 (412)
Q Consensus       268 fGla~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~s~ksDv~S~Gvil~ell-tg~~P~~~~~~~~~~~~~~~~~~~~~~  345 (412)
                      ||++......    ....++..|+|||.+. +..++.++|||||||++|||+ +|..|+....        .........
T Consensus       156 ~g~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~--------~~~~~~~~~  223 (262)
T cd05077         156 PGIPITVLSR----QECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIPLKDKT--------LAEKERFYE  223 (262)
T ss_pred             CCCCccccCc----ccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcc--------hhHHHHHHh
Confidence            9998754322    2235788999999886 466889999999999999997 5888865211        000111111


Q ss_pred             hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      ......  ..   ....+.+++.+||+.||.+||++.++++.|
T Consensus       224 ~~~~~~--~~---~~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         224 GQCMLV--TP---SCKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             cCccCC--CC---ChHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence            111111  11   112378899999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.8e-35  Score=273.24  Aligned_cols=230  Identities=23%  Similarity=0.276  Sum_probs=189.9

Q ss_pred             cCcccceeeeecCceEEEEEEeCC-CcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPD-GKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~-~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      +.|++.+.||.|.-|+||++++++ +..+|+|++                        +|+.....+..+.+++..|++|
T Consensus        77 ~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~m  156 (459)
T KOG0610|consen   77 RHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVM  156 (459)
T ss_pred             HHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEE
Confidence            346677899999999999999865 589999965                        5667777777788999999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC-
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV-  276 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~-  276 (412)
                      |||+||+|..+++.+... .++.....-++.+|+-||+|||-.   |||.|||||+|||+.++|++.|+||-++..... 
T Consensus       157 eyCpGGdL~~LrqkQp~~-~fse~~aRFYaAEvl~ALEYLHml---GivYRDLKPENILvredGHIMLsDFDLS~~~~~~  232 (459)
T KOG0610|consen  157 EYCPGGDLHSLRQKQPGK-RFSESAARFYAAEVLLALEYLHML---GIVYRDLKPENILVREDGHIMLSDFDLSLRCPVS  232 (459)
T ss_pred             ecCCCccHHHHHhhCCCC-ccchhhHHHHHHHHHHHHHHHHhh---ceeeccCCcceeEEecCCcEEeeeccccccCCCC
Confidence            999999999988776544 588899999999999999999998   999999999999999999999999998643210 


Q ss_pred             --------------------------------CCCC-----------------------cccccccccccccccccCccc
Q 042435          277 --------------------------------DSSN-----------------------RTLQAGTYGYIALELVYTMVV  301 (412)
Q Consensus       277 --------------------------------~~~~-----------------------~~~~~gt~~y~aPE~~~~~~~  301 (412)
                                                      ....                       ....+||-.|+|||++.+...
T Consensus       233 Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GH  312 (459)
T KOG0610|consen  233 PTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGH  312 (459)
T ss_pred             CeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCC
Confidence                                            0000                       012468999999999999999


Q ss_pred             CcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCC-
Q 042435          302 TEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPT-  380 (412)
Q Consensus       302 s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-  380 (412)
                      +.+.|.|+|||++|||+.|..||.       .......+..++.+.+..+...   .....+.+|+.+.|.+||++|.. 
T Consensus       313 gsAVDWWtfGIflYEmLyG~TPFK-------G~~~~~Tl~NIv~~~l~Fp~~~---~vs~~akDLIr~LLvKdP~kRlg~  382 (459)
T KOG0610|consen  313 GSAVDWWTFGIFLYEMLYGTTPFK-------GSNNKETLRNIVGQPLKFPEEP---EVSSAAKDLIRKLLVKDPSKRLGS  382 (459)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCcC-------CCCchhhHHHHhcCCCcCCCCC---cchhHHHHHHHHHhccChhhhhcc
Confidence            999999999999999999999998       3455566778887777665433   33445889999999999999987 


Q ss_pred             ---HHHHHH
Q 042435          381 ---MQRISQ  386 (412)
Q Consensus       381 ---~~evl~  386 (412)
                         +.||-+
T Consensus       383 ~rGA~eIK~  391 (459)
T KOG0610|consen  383 KRGAAEIKR  391 (459)
T ss_pred             ccchHHhhc
Confidence               666643

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.9e-35  Score=279.96  Aligned_cols=231  Identities=24%  Similarity=0.283  Sum_probs=178.7

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc------------------------CCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|+..+.||+|+||.||+|... +++.||+|.+.                        |+++......+......++||
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence            46888999999999999999775 58999999764                        344444455567778899999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++++|.+++..... ..+++..+..++.|++.||+|||+.   +++|+||||+||+++.++.++|+|||++......
T Consensus        81 e~~~~~~L~~~~~~~~~-~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~  156 (316)
T cd05574          81 DYCPGGELFRLLQRQPG-KCLSEEVARFYAAEVLLALEYLHLL---GIVYRDLKPENILLHESGHIMLSDFDLSKQSDVE  156 (316)
T ss_pred             EecCCCCHHHHHHhCCC-CccCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChHHeEEcCCCCEEEeecchhhccccc
Confidence            99999999998865422 2589999999999999999999998   9999999999999999999999999998754322


Q ss_pred             CC-----------------------------CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccc
Q 042435          278 SS-----------------------------NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLL  328 (412)
Q Consensus       278 ~~-----------------------------~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~  328 (412)
                      ..                             ......|+..|+|||++.+..++.++||||||+++|+|++|+.||... 
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~-  235 (316)
T cd05574         157 PPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGS-  235 (316)
T ss_pred             ccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCC-
Confidence            11                             011235788999999999888999999999999999999999998632 


Q ss_pred             ccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCC----HHHHHHH
Q 042435          329 SLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPT----MQRISQE  387 (412)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs----~~evl~~  387 (412)
                            ........+.......+...   .....+.+++.+||+.||++|||    ++|++++
T Consensus       236 ------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~~  289 (316)
T cd05574         236 ------NRDETFSNILKKEVTFPGSP---PVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQH  289 (316)
T ss_pred             ------chHHHHHHHhcCCccCCCcc---ccCHHHHHHHHHHccCCHhHCCCchhhHHHHHcC
Confidence                  11122223332222221111   12334889999999999999999    7777664

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=1e-35  Score=292.15  Aligned_cols=173  Identities=21%  Similarity=0.316  Sum_probs=146.5

Q ss_pred             CcccceeeeecCceEEEEEE-eCCCcEEEEEeccCC--------------------------ccccceEEEecCceEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHS--------------------------ETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~-~~~~~~vAvK~l~~~--------------------------~~~~~~~~~~~~~~~~lv  196 (412)
                      +|++.+.||+|+||.|.||. ..+++.||||.++..                          ++++....+...++.|||
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~HlciV  266 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCIV  266 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceeee
Confidence            78999999999999999995 567999999987531                          222333446678899999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC--CCcEEEeecCCcccc
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS--NLEAFVADFGTVRLL  274 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~--~~~~kl~DfGla~~~  274 (412)
                      +|.+. -+|+++++.+... .++......++.||+.||.+||+.   +|||+||||+||||.+  ...+||+|||.|...
T Consensus       267 fELL~-~NLYellK~n~f~-Glsl~~ir~~~~Qil~~L~~L~~l---~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~  341 (586)
T KOG0667|consen  267 FELLS-TNLYELLKNNKFR-GLSLPLVRKFAQQILTALLFLHEL---GIIHCDLKPENILLKDPKRSRIKVIDFGSSCFE  341 (586)
T ss_pred             ehhhh-hhHHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCChhheeeccCCcCceeEEeccccccc
Confidence            99995 4999999887543 489999999999999999999998   9999999999999963  457999999999865


Q ss_pred             CCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCc
Q 042435          275 DVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPG  324 (412)
Q Consensus       275 ~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~  324 (412)
                      .....   ....+..|+|||++.+.+|+.+.||||||||+.||++|.+-|
T Consensus       342 ~q~vy---tYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLf  388 (586)
T KOG0667|consen  342 SQRVY---TYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLF  388 (586)
T ss_pred             CCcce---eeeeccccccchhhccCCCCCccceeehhhhHHhHhcCcccc
Confidence            43322   456788999999999999999999999999999999997655

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-35  Score=284.58  Aligned_cols=231  Identities=22%  Similarity=0.289  Sum_probs=191.7

Q ss_pred             hhcCcccceeeeecCceEEEEEEeCC-CcEEEEEec------------------------c-CCccccceEEEecCceEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELPD-GKVVALKKL------------------------H-HSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~~-~~~vAvK~l------------------------~-~~~~~~~~~~~~~~~~~~  194 (412)
                      ..+.|++.+.||+|.||.||+++.+. |+.+|+|.+                        . |+++......+.+....+
T Consensus        33 ~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~  112 (382)
T KOG0032|consen   33 IKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVY  112 (382)
T ss_pred             ccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEE
Confidence            44568888999999999999998764 999999965                        3 777777888899999999


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC----CcEEEeecCC
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN----LEAFVADFGT  270 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~----~~~kl~DfGl  270 (412)
                      +|||++.+|.|.+.+...    .++......++.|++.++.|||+.   +|+||||||+|+|+...    +.+|++|||+
T Consensus       113 lvmEL~~GGeLfd~i~~~----~~sE~da~~~~~~il~av~~lH~~---gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGl  185 (382)
T KOG0032|consen  113 LVMELCEGGELFDRIVKK----HYSERDAAGIIRQILEAVKYLHSL---GVVHRDLKPENLLLASKDEGSGRIKLIDFGL  185 (382)
T ss_pred             EEEEecCCchHHHHHHHc----cCCHHHHHHHHHHHHHHHHHHHhC---CceeccCCHHHeeeccccCCCCcEEEeeCCC
Confidence            999999999999988765    288899999999999999999998   99999999999999533    5799999999


Q ss_pred             ccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCC
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP  350 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (412)
                      +..... .......+||+.|+|||++....|+..+||||+||++|.|++|..||...       ........+.......
T Consensus       186 a~~~~~-~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~-------~~~~~~~~i~~~~~~f  257 (382)
T KOG0032|consen  186 AKFIKP-GERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGE-------TEFEIFLAILRGDFDF  257 (382)
T ss_pred             ceEccC-CceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCC-------ChhHHHHHHHcCCCCC
Confidence            998776 44556789999999999999999999999999999999999999999732       2222333444433322


Q ss_pred             ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       351 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .. ..+......+.+++..|+..||.+|+|+.++++|
T Consensus       258 ~~-~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~H  293 (382)
T KOG0032|consen  258 TS-EPWDDISESAKDFIRKLLEFDPRKRLTAAQALQH  293 (382)
T ss_pred             CC-CCccccCHHHHHHHHHhcccCcccCCCHHHHhcC
Confidence            21 1222234458899999999999999999999997

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=6.5e-35  Score=271.62  Aligned_cols=232  Identities=26%  Similarity=0.370  Sum_probs=182.9

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc----------------------CCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH----------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ++|++.+.||+|++|.||+|... +++.||+|++.                      |+++......+...+..++|+||
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEY   80 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEe
Confidence            46888999999999999999875 59999999753                      44444455557778899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHh-CCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH-DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~-~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      +++++|.+++....   .+++..+..++.|+++|++|||+ .   +++||||+|+||+++.++.++|+|||++.......
T Consensus        81 ~~~~~L~~~l~~~~---~l~~~~~~~~~~~l~~~l~~lh~~~---~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~  154 (264)
T cd06623          81 MDGGSLADLLKKVG---KIPEPVLAYIARQILKGLDYLHTKR---HIIHRDIKPSNLLINSKGEVKIADFGISKVLENTL  154 (264)
T ss_pred             cCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHhccC---CCccCCCCHHHEEECCCCCEEEccCccceecccCC
Confidence            99999999987543   58999999999999999999998 8   99999999999999999999999999998765444


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      .......++..|+|||...+..++.++|+||||+++|||+||+.||.....     .........+.....+.....  .
T Consensus       155 ~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~  227 (264)
T cd06623         155 DQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQ-----PSFFELMQAICDGPPPSLPAE--E  227 (264)
T ss_pred             CcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccc-----cCHHHHHHHHhcCCCCCCCcc--c
Confidence            333345688999999999888899999999999999999999999863311     011111111111111111111  0


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+.+++.+||+.+|++||++.|++++
T Consensus       228 ~~~~l~~li~~~l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         228 FSPEFRDFISACLQKDPKKRPSAAELLQH  256 (264)
T ss_pred             CCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence            23348889999999999999999999875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=4.9e-35  Score=275.85  Aligned_cols=221  Identities=20%  Similarity=0.275  Sum_probs=167.5

Q ss_pred             eeeecCceEEEEEEe-CCCcEEEEEeccC---------------------------CccccceEEEecCceEEEEEEecc
Q 042435          150 CIGTGGYDSVYKAEL-PDGKVVALKKLHH---------------------------SETEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       150 ~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~---------------------------~~~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      .||+|+||.||++.. .+++.+|+|.++.                           +++......+...+..++||||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            489999999999976 4689999996632                           222222333556778899999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCc
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR  281 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~  281 (412)
                      +|+|.+++....   .+++.....++.|++.||+|||+.   +++||||||+||++++++.++++|||++.......  .
T Consensus        81 ~~~L~~~i~~~~---~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~--~  152 (279)
T cd05633          81 GGDLHYHLSQHG---VFSEKEMRFYATEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK--P  152 (279)
T ss_pred             CCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcCCCCCCHHHEEECCCCCEEEccCCcceeccccC--c
Confidence            999998886543   589999999999999999999998   99999999999999999999999999987543222  2


Q ss_pred             cccccccccccccccc-CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          282 TLQAGTYGYIALELVY-TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~-~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ....|+..|+|||... +..++.++|||||||++|||++|..||.....     ......... ........+..   ..
T Consensus       153 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~-----~~~~~~~~~-~~~~~~~~~~~---~~  223 (279)
T cd05633         153 HASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKT-----KDKHEIDRM-TLTVNVELPDS---FS  223 (279)
T ss_pred             cCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCC-----cCHHHHHHH-hhcCCcCCccc---cC
Confidence            2346899999999886 45688999999999999999999999863211     000111111 11111111111   12


Q ss_pred             HHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          361 ILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                      ..+.+++.+||+.||++||     +++|++++
T Consensus       224 ~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h  255 (279)
T cd05633         224 PELKSLLEGLLQRDVSKRLGCLGRGAQEVKEH  255 (279)
T ss_pred             HHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhC
Confidence            3477899999999999999     69999886

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=3.7e-35  Score=276.94  Aligned_cols=239  Identities=22%  Similarity=0.301  Sum_probs=174.9

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ++|++.+.||+|+||.||+|... +++.||+|++.                       |+++......+..++..++|+|
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFE   80 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEe
Confidence            46888999999999999999875 58999999753                       3333344444667788999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++++|..+.....   .++|.++..++.|++.||+|||+.   +++|+||+|+||++++++.++|+|||+++......
T Consensus        81 ~~~~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~l~~LH~~---~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~  154 (286)
T cd07846          81 FVDHTVLDDLEKYPN---GLDESRVRKYLFQILRGIEFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG  154 (286)
T ss_pred             cCCccHHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCcEEEEeeeeeeeccCCc
Confidence            999988887665432   489999999999999999999998   99999999999999999999999999988765443


Q ss_pred             CCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccc---------cCCCCcc-h---hhHHh
Q 042435          279 SNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS---------SSSGPKI-M---LIDIL  344 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~---------~~~~~~~-~---~~~~~  344 (412)
                      .......++..|+|||++.+ ..++.++||||||+++|||++|+.||.......         ....... .   .....
T Consensus       155 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (286)
T cd07846         155 EVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLF  234 (286)
T ss_pred             cccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHh
Confidence            33334567889999999865 447889999999999999999999885321100         0000000 0   00000


Q ss_pred             hhccCCccc------hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          345 YQRLSPPIN------QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       345 ~~~~~~~~~------~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .....+...      .........+.+++.+||+.+|++||++.+++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  283 (286)
T cd07846         235 AGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLHH  283 (286)
T ss_pred             hccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhcC
Confidence            000000000      0000112348899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=5e-35  Score=283.91  Aligned_cols=239  Identities=22%  Similarity=0.230  Sum_probs=172.0

Q ss_pred             HHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEe-----
Q 042435          138 LIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVY-----  188 (412)
Q Consensus       138 l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~-----  188 (412)
                      ..+..++|++.+.||+|+||.||+|.. .+++.||||++.                       |+++.....++.     
T Consensus        10 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   89 (343)
T cd07878          10 VWEVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSI   89 (343)
T ss_pred             HhhhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccc
Confidence            334567899999999999999999976 568899999764                       333333222221     


Q ss_pred             -cCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEee
Q 042435          189 -SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVAD  267 (412)
Q Consensus       189 -~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~D  267 (412)
                       .....++++|++ +++|.+++...    .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|
T Consensus        90 ~~~~~~~~~~~~~-~~~l~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrdikp~Nil~~~~~~~kl~D  161 (343)
T cd07878          90 ENFNEVYLVTNLM-GADLNNIVKCQ----KLSDEHVQFLIYQLLRGLKYIHSA---GIIHRDLKPSNVAVNEDCELRILD  161 (343)
T ss_pred             cccCcEEEEeecC-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecccCChhhEEECCCCCEEEcC
Confidence             124578999998 77888777543    489999999999999999999998   999999999999999999999999


Q ss_pred             cCCccccCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcc
Q 042435          268 FGTVRLLDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKI  338 (412)
Q Consensus       268 fGla~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~  338 (412)
                      ||+++.....   .....||..|+|||++.+ ..++.++|||||||++|||++|+.||........        ......
T Consensus       162 fg~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  238 (343)
T cd07878         162 FGLARQADDE---MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPE  238 (343)
T ss_pred             CccceecCCC---cCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHH
Confidence            9999865432   233468999999999876 5688999999999999999999999863211000        000000


Q ss_pred             hhhHH-------hhhccCCccchhh----HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          339 MLIDI-------LYQRLSPPINQKI----IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       339 ~~~~~-------~~~~~~~~~~~~~----~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+       ....+........    ......+.+++.+|++.||++|||+.|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~h  298 (343)
T cd07878         239 VLKKISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAH  298 (343)
T ss_pred             HHHhcchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            00000       0000000000000    0011236789999999999999999999976

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=2.6e-35  Score=280.27  Aligned_cols=224  Identities=24%  Similarity=0.326  Sum_probs=174.1

Q ss_pred             ceeeeecCceEEEEEEe-CCCcEEEEEecc---------------------CCccccceEEEecCceEEEEEEeccCCce
Q 042435          148 RYCIGTGGYDSVYKAEL-PDGKVVALKKLH---------------------HSETEDSAFVVYSPQCMFFIYEYMERGSL  205 (412)
Q Consensus       148 ~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~---------------------~~~~~~~~~~~~~~~~~~lv~ey~~~gsL  205 (412)
                      ...||+|+||.||+|.. .+++.||+|.++                     |+++......+..++..++++||+++++|
T Consensus        26 ~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~L  105 (297)
T cd06659          26 YIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGAL  105 (297)
T ss_pred             hhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCCH
Confidence            45799999999999976 468999999753                     44444445556778889999999999999


Q ss_pred             eeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCccccc
Q 042435          206 FCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA  285 (412)
Q Consensus       206 ~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~  285 (412)
                      .+++...    .+++..+..++.|++.||+|||+.   +++||||||+||+++.++.++|+|||++..............
T Consensus       106 ~~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~  178 (297)
T cd06659         106 TDIVSQT----RLNEEQIATVCESVLQALCYLHSQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLV  178 (297)
T ss_pred             HHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHeEEccCCcEEEeechhHhhccccccccccee
Confidence            8877543    489999999999999999999998   999999999999999999999999999876544333334456


Q ss_pred             ccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHH
Q 042435          286 GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVST  365 (412)
Q Consensus       286 gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (412)
                      |+..|+|||++.+..++.++||||||+++|||++|+.||....       ... ....+....... ..........+.+
T Consensus       179 ~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~-------~~~-~~~~~~~~~~~~-~~~~~~~~~~l~~  249 (297)
T cd06659         179 GTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDS-------PVQ-AMKRLRDSPPPK-LKNAHKISPVLRD  249 (297)
T ss_pred             cCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-------HHH-HHHHHhccCCCC-ccccCCCCHHHHH
Confidence            8999999999998889999999999999999999999986221       111 111111111110 0011111223778


Q ss_pred             HHHhcCcCCCCCCCCHHHHHHH
Q 042435          366 IALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       366 l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ++.+||+.+|++||++++++++
T Consensus       250 ~i~~~l~~~P~~Rps~~~ll~~  271 (297)
T cd06659         250 FLERMLTREPQERATAQELLDH  271 (297)
T ss_pred             HHHHHhcCCcccCcCHHHHhhC
Confidence            9999999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-37  Score=269.79  Aligned_cols=232  Identities=21%  Similarity=0.269  Sum_probs=184.2

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEe-----------------------ccCCccccceEEEecCceEEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKK-----------------------LHHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~-----------------------l~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      .+++|++.++||+|.|+.||++.. .+|+.+|+|.                       ++|+++.+......+....|+|
T Consensus         9 f~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylv   88 (355)
T KOG0033|consen    9 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV   88 (355)
T ss_pred             cchhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEE
Confidence            356788889999999999999954 5788888873                       4788888888888888999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC---CCcEEEeecCCccc
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS---NLEAFVADFGTVRL  273 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~---~~~~kl~DfGla~~  273 (412)
                      +|+|.||+|..-+-..   ...+....-..+.||+.+|.|+|.+   +|||||+||+|+++.+   ..-+|++|||+|..
T Consensus        89 Fe~m~G~dl~~eIV~R---~~ySEa~aSH~~rQiLeal~yCH~n---~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~  162 (355)
T KOG0033|consen   89 FDLVTGGELFEDIVAR---EFYSEADASHCIQQILEALAYCHSN---GIVHRDLKPENLLLASKAKGAAVKLADFGLAIE  162 (355)
T ss_pred             EecccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeeeeccCCCceeecccceEEE
Confidence            9999999996544332   2467777788999999999999999   9999999999999953   34589999999998


Q ss_pred             cCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccc
Q 042435          274 LDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN  353 (412)
Q Consensus       274 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (412)
                      +. +........|||+|||||++...+|+..+|||+.||+||-|+.|..||...       .......++.......+. 
T Consensus       163 l~-~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~-------~~~rlye~I~~g~yd~~~-  233 (355)
T KOG0033|consen  163 VN-DGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE-------DQHRLYEQIKAGAYDYPS-  233 (355)
T ss_pred             eC-CccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCc-------cHHHHHHHHhccccCCCC-
Confidence            87 555566778999999999999999999999999999999999999998731       111222233322222211 


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      +.+........+|+.+|+..||++|.|+.|.+++
T Consensus       234 ~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~H  267 (355)
T KOG0033|consen  234 PEWDTVTPEAKSLIRRMLTVNPKKRITADEALKH  267 (355)
T ss_pred             cccCcCCHHHHHHHHHHhccChhhhccHHHHhCC
Confidence            1222223347899999999999999999998875

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-37  Score=278.08  Aligned_cols=230  Identities=27%  Similarity=0.371  Sum_probs=189.0

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEecc-------------------CCccccceEEEecCceEEEEEEeccCC
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-------------------HSETEDSAFVVYSPQCMFFIYEYMERG  203 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-------------------~~~~~~~~~~~~~~~~~~lv~ey~~~g  203 (412)
                      -|++..+||+|+||.||||.+ ..|+.+|||++.                   .+.++..++.++....+|+|||||..|
T Consensus        34 VFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAG  113 (502)
T KOG0574|consen   34 VFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDTDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAG  113 (502)
T ss_pred             HHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccchHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCCC
Confidence            367778999999999999965 569999999763                   233444555567788899999999999


Q ss_pred             ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCccc
Q 042435          204 SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTL  283 (412)
Q Consensus       204 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~  283 (412)
                      +..++++.+++  +|+...+..++...++||+|||..   .-+|||||..|||++.++.+|++|||.|..+...-..+..
T Consensus       114 SiSDI~R~R~K--~L~E~EIs~iL~~TLKGL~YLH~~---~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNT  188 (502)
T KOG0574|consen  114 SISDIMRARRK--PLSEQEISAVLRDTLKGLQYLHDL---KKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNT  188 (502)
T ss_pred             cHHHHHHHhcC--CccHHHHHHHHHHHHhHHHHHHHH---HHHHhhcccccEEEcccchhhhhhccccchhhhhHHhhCc
Confidence            99999987654  589999999999999999999998   8899999999999999999999999999887665556677


Q ss_pred             ccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHH
Q 042435          284 QAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILV  363 (412)
Q Consensus       284 ~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (412)
                      ..||+.|||||++..-.|+.++||||+|++..||..|++||.+......       +  .+.+.-+++...........+
T Consensus       189 VIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRA-------I--FMIPT~PPPTF~KPE~WS~~F  259 (502)
T KOG0574|consen  189 VIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRA-------I--FMIPTKPPPTFKKPEEWSSEF  259 (502)
T ss_pred             cccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccce-------e--EeccCCCCCCCCChHhhhhHH
Confidence            8999999999999999999999999999999999999999875422111       0  111222233333344455568


Q ss_pred             HHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          364 STIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       364 ~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      -+++.+|+-++|++|-|+.+++++
T Consensus       260 ~DFi~~CLiK~PE~R~TA~~L~~H  283 (502)
T KOG0574|consen  260 NDFIRSCLIKKPEERKTALRLCEH  283 (502)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHhhh
Confidence            999999999999999999998876

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=1e-34  Score=278.23  Aligned_cols=174  Identities=25%  Similarity=0.380  Sum_probs=138.1

Q ss_pred             ceeeeecCceEEEEEEeC---CCcEEEEEec-------------------cCCccccceEEE--ecCceEEEEEEeccCC
Q 042435          148 RYCIGTGGYDSVYKAELP---DGKVVALKKL-------------------HHSETEDSAFVV--YSPQCMFFIYEYMERG  203 (412)
Q Consensus       148 ~~~lG~G~~g~Vy~~~~~---~~~~vAvK~l-------------------~~~~~~~~~~~~--~~~~~~~lv~ey~~~g  203 (412)
                      ..+||+|+||.||+|...   ++..||+|.+                   +|+++......+  ......++|+||+++ 
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~-   84 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH-   84 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCCcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC-
Confidence            368999999999999864   4578999965                   355555554444  345678999999965 


Q ss_pred             ceeeeeccCc------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe----cCCCcEEEeecCCccc
Q 042435          204 SLFCVLRDDD------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL----NSNLEAFVADFGTVRL  273 (412)
Q Consensus       204 sL~~~l~~~~------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl----~~~~~~kl~DfGla~~  273 (412)
                      +|.+++....      ....+++..+..++.|++.||+|||+.   +|+||||||+||++    +.++.+||+|||+++.
T Consensus        85 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~  161 (317)
T cd07867          85 DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGFARL  161 (317)
T ss_pred             cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEccCCCCCCcEEEeeccceec
Confidence            7766654221      123488999999999999999999998   99999999999999    5667899999999987


Q ss_pred             cCCCCC---CcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcc
Q 042435          274 LDVDSS---NRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGE  325 (412)
Q Consensus       274 ~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~  325 (412)
                      ......   ......||+.|+|||++.+ ..++.++|||||||++|||+||+.||.
T Consensus       162 ~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~  217 (317)
T cd07867         162 FNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFH  217 (317)
T ss_pred             cCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcc
Confidence            643322   1233468999999999876 457899999999999999999999986

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=4e-35  Score=276.56  Aligned_cols=238  Identities=18%  Similarity=0.213  Sum_probs=170.1

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEeccC-----------------------CccccceEEEecCceEEEEEEe
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHH-----------------------SETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~-----------------------~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +|++.+.||+|+||.||+|... +|+.||+|+++.                       +++......+.+.+..++|+||
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEY   80 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEec
Confidence            4778899999999999999774 689999997643                       2222222335567788999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      ++ ++|.+++....  ..+++.....++.|+++||.|||+.   +++||||||+||+++.++.++|+|||+++.......
T Consensus        81 ~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~  154 (284)
T cd07839          81 CD-QDLKKYFDSCN--GDIDPEIVKSFMFQLLKGLAFCHSH---NVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVR  154 (284)
T ss_pred             CC-CCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEcCCCcEEECccchhhccCCCCC
Confidence            97 57877765432  2489999999999999999999998   999999999999999999999999999986544333


Q ss_pred             CcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccccc---------CCCCcch---hhHHhhh
Q 042435          280 NRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS---------SSGPKIM---LIDILYQ  346 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~---------~~~~~~~---~~~~~~~  346 (412)
                      ......++..|+|||++.+. .++.++|||||||++|||+||..|+........         .......   ..+..+.
T Consensus       155 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (284)
T cd07839         155 CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDY  234 (284)
T ss_pred             CcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccc
Confidence            33344678899999988764 478999999999999999999998642111000         0000000   0000000


Q ss_pred             ccCCccc------hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          347 RLSPPIN------QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       347 ~~~~~~~------~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+...      .........+.+++.+||+.||.+|||++|++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~h  281 (284)
T cd07839         235 KPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQH  281 (284)
T ss_pred             cccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhcC
Confidence            0000000      0000112347789999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-35  Score=278.86  Aligned_cols=228  Identities=20%  Similarity=0.266  Sum_probs=179.2

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEeccC------------------------CccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHH------------------------SETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~------------------------~~~~~~~~~~~~~~~~~lv  196 (412)
                      .+.|..-++||+||||.||-++. .+|+.+|.|++..                        +.++.....+.+++.+++|
T Consensus       184 ~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClV  263 (591)
T KOG0986|consen  184 KNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLV  263 (591)
T ss_pred             ccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEE
Confidence            35688889999999999999976 4699999986632                        2233334447789999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      +..|.||+|.-+|.+.+. ..++.....-++.+|+.||++||..   +||.|||||+|||+|++|+++|+|.|+|..+..
T Consensus       264 LtlMNGGDLkfHiyn~g~-~gF~e~ra~FYAAEi~cGLehlH~~---~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~  339 (591)
T KOG0986|consen  264 LTLMNGGDLKFHIYNHGN-PGFDEQRARFYAAEIICGLEHLHRR---RIVYRDLKPENILLDDHGHVRISDLGLAVEIPE  339 (591)
T ss_pred             EEeecCCceeEEeeccCC-CCCchHHHHHHHHHHHhhHHHHHhc---ceeeccCChhheeeccCCCeEeeccceEEecCC
Confidence            999999999999987764 3589999999999999999999999   999999999999999999999999999987765


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      ...... .+||.+|||||++.+..|+...|.||+||++|||+.|+.||....        +..-.+-++.+.........
T Consensus       340 g~~~~~-rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~K--------eKvk~eEvdrr~~~~~~ey~  410 (591)
T KOG0986|consen  340 GKPIRG-RVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRK--------EKVKREEVDRRTLEDPEEYS  410 (591)
T ss_pred             CCcccc-ccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhh--------hhhhHHHHHHHHhcchhhcc
Confidence            544333 489999999999999999999999999999999999999997321        11112223332222111111


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQ  382 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~  382 (412)
                      ........++....+++||++|-...
T Consensus       411 ~kFS~eakslc~~LL~Kdp~~RLGcr  436 (591)
T KOG0986|consen  411 DKFSEEAKSLCEGLLTKDPEKRLGCR  436 (591)
T ss_pred             cccCHHHHHHHHHHHccCHHHhccCC
Confidence            22233477888899999999997543

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7e-35  Score=273.89  Aligned_cols=227  Identities=26%  Similarity=0.413  Sum_probs=177.0

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEecc-------------------------CCccccceEEEecCceEEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-------------------------HSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-------------------------~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      .|+..+.||+|+||.||+|.. .+++.||+|.++                         |+++......+..+...++||
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~   81 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIM   81 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEE
Confidence            477788999999999999986 578999999753                         344444445566778899999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++++|.++++..    .+++.....++.|++.||.|||+.   +++|+||+|+||++++++.++|+|||++......
T Consensus        82 e~~~~~~L~~~~~~~----~l~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~  154 (277)
T cd06917          82 EYAEGGSVRTLMKAG----PIAEKYISVIIREVLVALKYIHKV---GVIHRDIKAANILVTNTGNVKLCDFGVAALLNQN  154 (277)
T ss_pred             ecCCCCcHHHHHHcc----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHHEEEcCCCCEEEccCCceeecCCC
Confidence            999999999888653    489999999999999999999998   9999999999999999999999999999876554


Q ss_pred             CCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          278 SSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      ........|+..|+|||.+.+ ..++.++|+||||+++|+|++|+.||......       . ..........+..... 
T Consensus       155 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~-------~-~~~~~~~~~~~~~~~~-  225 (277)
T cd06917         155 SSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAF-------R-AMMLIPKSKPPRLEDN-  225 (277)
T ss_pred             ccccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChh-------h-hhhccccCCCCCCCcc-
Confidence            433444578899999998865 45788999999999999999999998632111       0 0011111111111111 


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                       .....+.+++.+||+.||++||++.|++++
T Consensus       226 -~~~~~~~~~i~~~l~~~p~~R~~~~~il~~  255 (277)
T cd06917         226 -GYSKLLREFVAACLDEEPKERLSAEELLKS  255 (277)
T ss_pred             -cCCHHHHHHHHHHcCCCcccCcCHHHHhhC
Confidence             122347889999999999999999999874

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.1e-35  Score=274.44  Aligned_cols=236  Identities=25%  Similarity=0.371  Sum_probs=179.2

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------cCCccccceEEEec------Cc
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------HHSETEDSAFVVYS------PQ  191 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------~~~~~~~~~~~~~~------~~  191 (412)
                      .++++|++.+.||+|+||.||+|... +++.+++|.+                     .|+++......+..      ..
T Consensus         3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (275)
T cd06608           3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDD   82 (275)
T ss_pred             CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcce
Confidence            46789999999999999999999874 5789999965                     34555555554443      34


Q ss_pred             eEEEEEEeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCC
Q 042435          192 CMFFIYEYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGT  270 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGl  270 (412)
                      ..++||||+++++|.+++.... ....+++..+..++.|++.||+|||+.   +++|+||+|+||++++++.++|+|||+
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~~l~p~ni~~~~~~~~~l~d~~~  159 (275)
T cd06608          83 QLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHEN---KVIHRDIKGQNILLTKNAEVKLVDFGV  159 (275)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEEccCCeEEECCCcc
Confidence            5899999999999998876432 123589999999999999999999998   999999999999999999999999999


Q ss_pred             ccccCCCCCCcccccccccccccccccC-----cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhh
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYT-----MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY  345 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~  345 (412)
                      +..............|+..|+|||++..     ..++.++||||||+++|||++|+.||....       .......+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-------~~~~~~~~~~  232 (275)
T cd06608         160 SAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMH-------PMRALFKIPR  232 (275)
T ss_pred             ceecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccc-------hHHHHHHhhc
Confidence            8765443333344568899999998753     346789999999999999999999986321       1111112111


Q ss_pred             hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      . ..+.. .........+.+++.+||..||++|||+.|++++
T Consensus       233 ~-~~~~~-~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~~  272 (275)
T cd06608         233 N-PPPTL-KSPENWSKKFNDFISECLIKNYEQRPFMEELLEH  272 (275)
T ss_pred             c-CCCCC-CchhhcCHHHHHHHHHHhhcChhhCcCHHHHhcC
Confidence            1 11111 1111123347899999999999999999999864

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=5.8e-35  Score=277.26  Aligned_cols=229  Identities=25%  Similarity=0.342  Sum_probs=179.6

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEec
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      ++|++.+.||+|+||.||++.. .+++.||+|.+                     +|+++......+...+..++|+||+
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~   98 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYL   98 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecC
Confidence            6788999999999999999975 46889999965                     3455555555567778899999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++++|.+++...    .+++..+..++.|++.||+|||+.   +++||||||+||+++.++.++|+|||++.........
T Consensus        99 ~~~~L~~~~~~~----~l~~~~~~~i~~~l~~al~~LH~~---gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~  171 (293)
T cd06647          99 AGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK  171 (293)
T ss_pred             CCCcHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhC---CEeeccCCHHHEEEcCCCCEEEccCcceecccccccc
Confidence            999999988654    378999999999999999999998   9999999999999999999999999998765544333


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      .....+++.|+|||.+....++.++||||||+++||+++|+.||......       .......... .+.. .......
T Consensus       172 ~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~-------~~~~~~~~~~-~~~~-~~~~~~~  242 (293)
T cd06647         172 RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPL-------RALYLIATNG-TPEL-QNPEKLS  242 (293)
T ss_pred             cccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChh-------hheeehhcCC-CCCC-CCccccC
Confidence            34456888999999998888999999999999999999999998732110       0000000000 0100 0111112


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..+.+++.+||+.+|++||++.+++.+
T Consensus       243 ~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         243 AIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            347789999999999999999999977

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-36  Score=292.47  Aligned_cols=226  Identities=27%  Similarity=0.367  Sum_probs=182.2

Q ss_pred             eeeecCceEEEEEEeCC-CcEEEEEec---------------------cCCccccceEEEecCceEEEEEEeccCCceee
Q 042435          150 CIGTGGYDSVYKAELPD-GKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEYMERGSLFC  207 (412)
Q Consensus       150 ~lG~G~~g~Vy~~~~~~-~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~gsL~~  207 (412)
                      +||+|.||+||.|+..+ ...+|||.+                     +|.|+++..+.+..++.+-+.||-.|||+|.+
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSs  661 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSS  661 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHH
Confidence            79999999999997754 557899954                     67788888888888899999999999999999


Q ss_pred             eeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec-CCCcEEEeecCCccccCCCCCCcccccc
Q 042435          208 VLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN-SNLEAFVADFGTVRLLDVDSSNRTLQAG  286 (412)
Q Consensus       208 ~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~-~~~~~kl~DfGla~~~~~~~~~~~~~~g  286 (412)
                      +|+..-+...=+..+.-.+..||++||.|||++   .|||||||-+|+|++ -.|.+||+|||-++.+..-.....+..|
T Consensus       662 LLrskWGPlKDNEstm~fYtkQILeGLkYLHen---~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TETFTG  738 (1226)
T KOG4279|consen  662 LLRSKWGPLKDNESTMNFYTKQILEGLKYLHEN---KIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTG  738 (1226)
T ss_pred             HHHhccCCCccchhHHHHHHHHHHHHhhhhhhc---ceeeccccCCcEEEeeccceEEecccccchhhccCCcccccccc
Confidence            998765433336777888899999999999999   999999999999996 5789999999999987665555667789


Q ss_pred             cccccccccccCc--ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHH
Q 042435          287 TYGYIALELVYTM--VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVS  364 (412)
Q Consensus       287 t~~y~aPE~~~~~--~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (412)
                      |..|||||++..+  .|+.++|||||||++.||.||++||....+.      ...+-.+---...|+++...   .....
T Consensus       739 TLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~Elgsp------qAAMFkVGmyKvHP~iPeel---saeak  809 (1226)
T KOG4279|consen  739 TLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSP------QAAMFKVGMYKVHPPIPEEL---SAEAK  809 (1226)
T ss_pred             chhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCCh------hHhhhhhcceecCCCCcHHH---HHHHH
Confidence            9999999999765  4888999999999999999999999744221      11111221122233443333   34478


Q ss_pred             HHHHhcCcCCCCCCCCHHHHHHH
Q 042435          365 TIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       365 ~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .++.+|+.+||.+||++.+++..
T Consensus       810 ~FilrcFepd~~~R~sA~~LL~D  832 (1226)
T KOG4279|consen  810 NFILRCFEPDPCDRPSAKDLLQD  832 (1226)
T ss_pred             HHHHHHcCCCcccCccHHHhccC
Confidence            89999999999999999999864

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=4.2e-35  Score=307.96  Aligned_cols=236  Identities=19%  Similarity=0.264  Sum_probs=176.7

Q ss_pred             HHhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEe--cCce
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVY--SPQC  192 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~--~~~~  192 (412)
                      ....++|++.+.||+|+||.||+|... +++.||+|.+                       +|+++......+.  ..+.
T Consensus         9 e~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~   88 (1021)
T PTZ00266          9 ESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQK   88 (1021)
T ss_pred             ccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCE
Confidence            345578999999999999999999764 5778899864                       4566666555443  3467


Q ss_pred             EEEEEEeccCCceeeeeccCcc-cccCCHHHHHHHHHHHHHHHHHHHhCCC----CCcEEeCCCCCCEEecC--------
Q 042435          193 MFFIYEYMERGSLFCVLRDDDE-AIELNWTRRMNIVKSVAHALSYLHHDCT----PSIVHRDISSNNILLNS--------  259 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~ia~gL~~LH~~~~----~~ivHrDlkp~NILl~~--------  259 (412)
                      +|+||||+++|+|.++|..... ...+++..++.|+.||+.||+|||+...    .+|+||||||+|||++.        
T Consensus        89 lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i  168 (1021)
T PTZ00266         89 LYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKI  168 (1021)
T ss_pred             EEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccc
Confidence            8999999999999998865321 2358999999999999999999998521    35999999999999964        


Q ss_pred             ---------CCcEEEeecCCccccCCCCCCcccccccccccccccccC--cccCcccccHHHHHHHHHHHhCCCCccccc
Q 042435          260 ---------NLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT--MVVTEKCVIYSFGVVALEVLMGTHPGELLL  328 (412)
Q Consensus       260 ---------~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~s~ksDv~S~Gvil~elltg~~P~~~~~  328 (412)
                               ...+||+|||+++....... .....||+.|+|||++.+  ..++.++|||||||++|||+||+.||....
T Consensus       169 ~~~~~n~ng~~iVKLsDFGlAr~l~~~s~-~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~  247 (1021)
T PTZ00266        169 TAQANNLNGRPIAKIGDFGLSKNIGIESM-AHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKAN  247 (1021)
T ss_pred             cccccccCCCCceEEccCCcccccccccc-ccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCC
Confidence                     34589999999986543322 233468999999999854  458899999999999999999999986321


Q ss_pred             ccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHH
Q 042435          329 SLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQ  386 (412)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  386 (412)
                             ....+...+......+..    .....+.+|+..||+.+|.+||++.|++.
T Consensus       248 -------~~~qli~~lk~~p~lpi~----~~S~eL~dLI~~~L~~dPeeRPSa~QlL~  294 (1021)
T PTZ00266        248 -------NFSQLISELKRGPDLPIK----GKSKELNILIKNLLNLSAKERPSALQCLG  294 (1021)
T ss_pred             -------cHHHHHHHHhcCCCCCcC----CCCHHHHHHHHHHhcCChhHCcCHHHHhc
Confidence                   111112222221111111    11234788999999999999999999984

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=8.7e-35  Score=277.54  Aligned_cols=233  Identities=21%  Similarity=0.244  Sum_probs=177.5

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc------------------------CCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||++... +++.||+|.+.                        |+++......+..++..++||
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            46889999999999999999774 57899999653                        444555555567778899999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++++|.+++....   .+++..+..++.|++.||+|||+.   +++||||||+||+++.++.++++|||+++.....
T Consensus        81 e~~~g~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~  154 (305)
T cd05609          81 EYVEGGDCATLLKNIG---ALPVDMARMYFAETVLALEYLHNY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMS  154 (305)
T ss_pred             ecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHEEECCCCCEEEeeCCCccccCcC
Confidence            9999999999986643   588999999999999999999998   9999999999999999999999999998742111


Q ss_pred             CC---------------CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhH
Q 042435          278 SS---------------NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLID  342 (412)
Q Consensus       278 ~~---------------~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~  342 (412)
                      ..               ......++..|+|||.+.+..++.++|+||||+++||+++|+.||...       ........
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~-------~~~~~~~~  227 (305)
T cd05609         155 LTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGD-------TPEELFGQ  227 (305)
T ss_pred             ccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-------CHHHHHHH
Confidence            00               011235788999999998888999999999999999999999998621       11111122


Q ss_pred             HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      ........+...  ......+.+++.+||+.||++||++.++.+.|+.
T Consensus       228 ~~~~~~~~~~~~--~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~  273 (305)
T cd05609         228 VISDDIEWPEGD--EALPADAQDLISRLLRQNPLERLGTGGAFEVKQH  273 (305)
T ss_pred             HHhcccCCCCcc--ccCCHHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence            221111111110  1122347899999999999999997666666655

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=8.8e-35  Score=272.50  Aligned_cols=231  Identities=24%  Similarity=0.343  Sum_probs=175.8

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEecc-------------------------------CCccccceEEEecCc
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-------------------------------HSETEDSAFVVYSPQ  191 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-------------------------------~~~~~~~~~~~~~~~  191 (412)
                      +|...+.||+|+||.||+|.. .+|+.+|+|.++                               |+++......+...+
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   81 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE   81 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC
Confidence            467788999999999999975 468999999653                               344444445567778


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                      ..++||||+++|+|.++++...   .+++..+..++.|++.||.|||+.   +++||||+|+||+++.++.++++|||++
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~~~nil~~~~~~~~l~d~~~~  155 (272)
T cd06629          82 YLSIFLEYVPGGSIGSCLRTYG---RFEEQLVRFFTEQVLEGLAYLHSK---GILHRDLKADNLLVDADGICKISDFGIS  155 (272)
T ss_pred             ceEEEEecCCCCcHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHhhC---CeeecCCChhhEEEcCCCeEEEeecccc
Confidence            8999999999999999887653   589999999999999999999998   9999999999999999999999999998


Q ss_pred             cccCCCCC--CcccccccccccccccccCcc--cCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhc
Q 042435          272 RLLDVDSS--NRTLQAGTYGYIALELVYTMV--VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQR  347 (412)
Q Consensus       272 ~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~--~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~  347 (412)
                      +.......  ......|+..|+|||.+....  ++.++|+||||+++||+++|..||.....       .....+.....
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~-------~~~~~~~~~~~  228 (272)
T cd06629         156 KKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEA-------IAAMFKLGNKR  228 (272)
T ss_pred             ccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcch-------HHHHHHhhccc
Confidence            76432211  122345788999999987654  78999999999999999999999863211       11111111111


Q ss_pred             cCCccchh-hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          348 LSPPINQK-IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       348 ~~~~~~~~-~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .....+.. .......+.+++.+||+.+|++|||++|++++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  269 (272)
T cd06629         229 SAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTARELLQH  269 (272)
T ss_pred             cCCcCCccccccCCHHHHHHHHHHhcCChhhCCCHHHHhhC
Confidence            11111111 01122348889999999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=7.1e-35  Score=270.42  Aligned_cols=229  Identities=23%  Similarity=0.323  Sum_probs=178.1

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEEe
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +|++.+.||+|+||.||+|... +|..+|+|.+.                       |+++......+......++|+||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence            4788899999999999999774 58899999753                       44444445557778889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC-cEEEeecCCccccCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL-EAFVADFGTVRLLDVDS  278 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~-~~kl~DfGla~~~~~~~  278 (412)
                      +++++|.+++..... ..+++..+..++.|++.||+|||+.   +++|+||||+||++++++ .++++|||.+.......
T Consensus        81 ~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~  156 (257)
T cd08225          81 CDGGDLMKRINRQRG-VLFSEDQILSWFVQISLGLKHIHDR---KILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSM  156 (257)
T ss_pred             CCCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEcCCCCeEEecccccchhccCCc
Confidence            999999998865432 2479999999999999999999998   999999999999998875 56999999998665433


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      .......|++.|+|||+..+..++.++|+||||+++||+++|+.||....       ............... ...   .
T Consensus       157 ~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-------~~~~~~~~~~~~~~~-~~~---~  225 (257)
T cd08225         157 ELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNN-------LHQLVLKICQGYFAP-ISP---N  225 (257)
T ss_pred             ccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCcc-------HHHHHHHHhcccCCC-CCC---C
Confidence            33333468899999999988889999999999999999999999986321       111112222221111 111   1


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+.+++.+||..+|++|||+.|++++
T Consensus       226 ~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~  254 (257)
T cd08225         226 FSRDLRSLISQLFKVSPRDRPSITSILKR  254 (257)
T ss_pred             CCHHHHHHHHHHhccChhhCcCHHHHhhC
Confidence            12247889999999999999999999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=1.7e-34  Score=268.92  Aligned_cols=230  Identities=27%  Similarity=0.341  Sum_probs=176.5

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEEe
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +|+..+.||+|+||.||+|... +++.||+|.++                       |+++......+...+..++|+||
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEY   80 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEec
Confidence            4788899999999999999764 68999999754                       34444444556677889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++++|.+++....   .+++..+..++.+++.||+|||+.   +++|+||+|+||++++++.+||+|||++........
T Consensus        81 ~~~~~L~~~~~~~~---~~~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~  154 (264)
T cd06626          81 CSGGTLEELLEHGR---ILDEHVIRVYTLQLLEGLAYLHSH---GIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTT  154 (264)
T ss_pred             CCCCcHHHHHhhcC---CCChHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEcccccccccCCCCC
Confidence            99999999887643   478899999999999999999998   999999999999999999999999999887644322


Q ss_pred             Cc----ccccccccccccccccCcc---cCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          280 NR----TLQAGTYGYIALELVYTMV---VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       280 ~~----~~~~gt~~y~aPE~~~~~~---~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ..    ....++..|+|||++.+..   ++.++||||||+++||+++|+.||....       ..............+..
T Consensus       155 ~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~-------~~~~~~~~~~~~~~~~~  227 (264)
T cd06626         155 TMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELD-------NEFQIMFHVGAGHKPPI  227 (264)
T ss_pred             cccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCc-------chHHHHHHHhcCCCCCC
Confidence            21    1246788999999998766   8899999999999999999999986321       11111111111111111


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      +. .......+.+++.+||+.+|++|||+.|++.+
T Consensus       228 ~~-~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~~  261 (264)
T cd06626         228 PD-SLQLSPEGKDFLDRCLESDPKKRPTASELLQH  261 (264)
T ss_pred             Cc-ccccCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence            11 11112347789999999999999999998753

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=7.1e-35  Score=280.99  Aligned_cols=176  Identities=19%  Similarity=0.275  Sum_probs=145.0

Q ss_pred             cceeeeec--CceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEEec
Q 042435          147 IRYCIGTG--GYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       147 ~~~~lG~G--~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      +.++||+|  +||+||++.. .+|+.||+|++                       +|+++......+..++..++||||+
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   81 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM   81 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEecc
Confidence            45789999  7899999976 57899999965                       4677777777788889999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC-
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS-  279 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~-  279 (412)
                      ++|+|.+++..... ..+++..+..++.|++.||+|||++   +|+||||||+||+++.++.++++||+.......... 
T Consensus        82 ~~~~l~~~~~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~---~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~  157 (327)
T cd08227          82 AYGSAKDLICTHFM-DGMSELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQR  157 (327)
T ss_pred             CCCcHHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCChhhEEEecCCcEEEcccchhhcccccccc
Confidence            99999998865322 1489999999999999999999998   999999999999999999999999986543321110 


Q ss_pred             ------CcccccccccccccccccC--cccCcccccHHHHHHHHHHHhCCCCccc
Q 042435          280 ------NRTLQAGTYGYIALELVYT--MVVTEKCVIYSFGVVALEVLMGTHPGEL  326 (412)
Q Consensus       280 ------~~~~~~gt~~y~aPE~~~~--~~~s~ksDv~S~Gvil~elltg~~P~~~  326 (412)
                            ......++..|+|||++.+  ..++.++|||||||++|||++|+.||..
T Consensus       158 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  212 (327)
T cd08227         158 LRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKD  212 (327)
T ss_pred             ccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence                  0122346778999999875  4588999999999999999999999963

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=4.2e-35  Score=273.37  Aligned_cols=230  Identities=24%  Similarity=0.303  Sum_probs=178.7

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc----------------------CCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH----------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ++|+..+.||+|+||.||++... +++.+|+|.+.                      |+++......+......++++||
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEY   80 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEe
Confidence            36778889999999999999875 68999999653                      34444445557777899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHh-CCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH-DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~-~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      +++++|.+++....  ..++......++.|++.||+|||+ .   +++|+||||+||+++.++.++|+|||.+.......
T Consensus        81 ~~~~~L~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~lH~~~---~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~  155 (265)
T cd06605          81 MDGGSLDKILKEVQ--GRIPERILGKIAVAVLKGLTYLHEKH---KIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSL  155 (265)
T ss_pred             cCCCcHHHHHHHcc--CCCCHHHHHHHHHHHHHHHHHHcCCC---CeecCCCCHHHEEECCCCCEEEeecccchhhHHHH
Confidence            99999999887643  258889999999999999999998 6   99999999999999999999999999987653222


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhcc---CCccchh
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRL---SPPINQK  355 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  355 (412)
                      ..  ...++..|+|||...+..++.++||||||+++|+|++|+.||.....      ......+......   .+..+..
T Consensus       156 ~~--~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  227 (265)
T cd06605         156 AK--TFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPEND------PPDGIFELLQYIVNEPPPRLPSG  227 (265)
T ss_pred             hh--cccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccc------ccccHHHHHHHHhcCCCCCCChh
Confidence            11  25688899999999988999999999999999999999999863211      0111112221111   1111111


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                        .....+.+++.+||..||++|||+.|++.+
T Consensus       228 --~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  257 (265)
T cd06605         228 --KFSPDFQDFVNLCLIKDPRERPSYKELLEH  257 (265)
T ss_pred             --hcCHHHHHHHHHHcCCCchhCcCHHHHhhC
Confidence              123347899999999999999999999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=9e-35  Score=275.24  Aligned_cols=239  Identities=19%  Similarity=0.265  Sum_probs=174.1

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc----------------------CCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH----------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ++|++.+.||+|++|.||+|... +++.||+|.+.                      |+++.....++...+..++||||
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEY   84 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEec
Confidence            67889999999999999999775 68999999753                      44455555667788899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++ +|.+++.....  .+++.....++.|++.||.|||+.   +++||||||+||+++.++.+||+|||+++.......
T Consensus        85 ~~~-~L~~~~~~~~~--~~~~~~~~~~~~ql~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~  158 (291)
T cd07844          85 LDT-DLKQYMDDCGG--GLSMHNVRLFLFQLLRGLAYCHQR---RVLHRDLKPQNLLISERGELKLADFGLARAKSVPSK  158 (291)
T ss_pred             CCC-CHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCHHHEEEcCCCCEEECccccccccCCCCc
Confidence            974 89888765432  588999999999999999999998   999999999999999999999999999875433222


Q ss_pred             CcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc---------CCCCcchhhHHhh----
Q 042435          280 NRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS---------SSGPKIMLIDILY----  345 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~---------~~~~~~~~~~~~~----  345 (412)
                      ......++..|+|||++.+ ..++.++||||||+++|||++|+.||........         .............    
T Consensus       159 ~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (291)
T cd07844         159 TYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEF  238 (291)
T ss_pred             cccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhcccc
Confidence            2233356889999998865 4578899999999999999999999863210000         0000000000000    


Q ss_pred             --hccCCccchh------hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 --QRLSPPINQK------IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 --~~~~~~~~~~------~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                        ..........      .......+.+++.+|++.+|++|||+.|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~~  288 (291)
T cd07844         239 KPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMKH  288 (291)
T ss_pred             ccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhcC
Confidence              0000000000      00011347789999999999999999998763

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=1.4e-34  Score=274.82  Aligned_cols=238  Identities=24%  Similarity=0.252  Sum_probs=174.4

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEeccC--------------------------CccccceEEEecCceEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHH--------------------------SETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~--------------------------~~~~~~~~~~~~~~~~~lv  196 (412)
                      +|+..+.||+|+||.||+|... +++.||+|.++.                          +++......+.+.+..++|
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLV   80 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEE
Confidence            4778889999999999999764 689999997643                          3333334446667889999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+ +|+|.+++....  ..+++..+..++.|+++||+|||++   +++|+||||+||+++.++.++|+|||+++....
T Consensus        81 ~e~~-~~~L~~~i~~~~--~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~  154 (298)
T cd07841          81 FEFM-ETDLEKVIKDKS--IVLTPADIKSYMLMTLRGLEYLHSN---WILHRDLKPNNLLIASDGVLKLADFGLARSFGS  154 (298)
T ss_pred             Eccc-CCCHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCChhhEEEcCCCCEEEccceeeeeccC
Confidence            9999 899999987643  2589999999999999999999998   999999999999999999999999999987654


Q ss_pred             CCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcchh------h
Q 042435          277 DSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKIML------I  341 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~~~------~  341 (412)
                      .........+++.|+|||.+.+ ..++.++|||||||++|||++|..||........        ........      .
T Consensus       155 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (298)
T cd07841         155 PNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLP  234 (298)
T ss_pred             CCccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhhccccc
Confidence            4333334456788999998854 4578899999999999999999777652211000        00000000      0


Q ss_pred             HHhhhccCCcc--chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          342 DILYQRLSPPI--NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       342 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .........+.  ..........+.+++.+||+.||++|||+.|++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~  282 (298)
T cd07841         235 DYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEH  282 (298)
T ss_pred             ccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence            00000000000  00001112357899999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=1.7e-34  Score=273.38  Aligned_cols=241  Identities=21%  Similarity=0.231  Sum_probs=173.3

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc----------------------CCccccceEEEecCceEEEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH----------------------HSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++++|.+.+.||+|+||.||+|.. .+++.||+|.++                      |+++......+..++..++|+
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   82 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF   82 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence            567899999999999999999976 468999999763                      334444445566778899999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||++ ++|.+++....  ..+.+..+..++.|++.||+|||+.   +++|+||||+||+++.++.++|+|||+++.....
T Consensus        83 e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~  156 (291)
T cd07870          83 EYMH-TDLAQYMIQHP--GGLHPYNVRLFMFQLLRGLAYIHGQ---HILHRDLKPQNLLISYLGELKLADFGLARAKSIP  156 (291)
T ss_pred             eccc-CCHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEEcCCCcEEEeccccccccCCC
Confidence            9996 67766654332  2478888899999999999999998   9999999999999999999999999998765433


Q ss_pred             CCCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccccC--------CCCcchhh-------
Q 042435          278 SSNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSS--------SGPKIMLI-------  341 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~--------~~~~~~~~-------  341 (412)
                      ........++..|+|||.+.+. .++.++||||||+++|||++|+.||+........        ..+.....       
T Consensus       157 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (291)
T cd07870         157 SQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLP  236 (291)
T ss_pred             CCCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcc
Confidence            3223334578899999998753 5788999999999999999999998632110000        00000000       


Q ss_pred             ---HHhhhccCCccchh---hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          342 ---DILYQRLSPPINQK---IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       342 ---~~~~~~~~~~~~~~---~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                         ........+.....   .......+.+++.+|+..||++|||+.|++.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~h  288 (291)
T cd07870         237 NYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDALLH  288 (291)
T ss_pred             cccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHHhcC
Confidence               00000000000000   00112347789999999999999999998764

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=1.8e-34  Score=267.60  Aligned_cols=229  Identities=25%  Similarity=0.394  Sum_probs=175.7

Q ss_pred             cccceeeeecCceEEEEEEeCC-----CcEEEEEecc----------------------CCccccceEEEecCceEEEEE
Q 042435          145 FHIRYCIGTGGYDSVYKAELPD-----GKVVALKKLH----------------------HSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~~-----~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      |++.+.||+|+||.||++...+     +..||+|.++                      |+++......+...+..+++|
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~   80 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVM   80 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEE
Confidence            3567889999999999998753     4889999764                      333344444566778899999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++++|.+++...... .+++.++..++.|++.||+|||+.   +++|+||||+||++++++.++++|||+++.....
T Consensus        81 e~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ql~~~l~~lh~~---~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~  156 (258)
T smart00219       81 EYMEGGDLLDYLRKNRPK-ELSLSDLLSFALQIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDD  156 (258)
T ss_pred             eccCCCCHHHHHHhhhhc-cCCHHHHHHHHHHHHHHHHHHhcC---CeeecccccceEEEccCCeEEEcccCCceecccc
Confidence            999999999998764421 289999999999999999999998   9999999999999999999999999999866543


Q ss_pred             CCCcc-cccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          278 SSNRT-LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       278 ~~~~~-~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ..... ...+++.|+|||...+..++.++||||+|++++||++ |..||...        ......+.............
T Consensus       157 ~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~--------~~~~~~~~~~~~~~~~~~~~  228 (258)
T smart00219      157 DYYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGM--------SNEEVLEYLKKGYRLPKPEN  228 (258)
T ss_pred             cccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCC--------CHHHHHHHHhcCCCCCCCCc
Confidence            22111 2336789999999988889999999999999999998 78887621        11111122221111111111


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                         ....+.+++.+||..||++|||+.|+++.|
T Consensus       229 ---~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      229 ---CPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             ---CCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence               233488899999999999999999998764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=2e-34  Score=267.17  Aligned_cols=228  Identities=22%  Similarity=0.330  Sum_probs=176.2

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEEe
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +|+..+.||+|+||.||++.. .+++.+|+|.+.                       |+++......+...+..++||||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            478889999999999999976 468899999753                       44444444456667889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC-CcEEEeecCCccccCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN-LEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~-~~~kl~DfGla~~~~~~~  278 (412)
                      +++++|.+++..... ..+++..+..++.+++.||+|||++   +++|+||||+||+++++ ..++++|||+++......
T Consensus        81 ~~~~~L~~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~  156 (256)
T cd08220          81 APGGTLAEYIQKRCN-SLLDEDTILHFFVQILLALHHVHTK---LILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKS  156 (256)
T ss_pred             CCCCCHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCc
Confidence            999999999876432 2489999999999999999999998   99999999999999854 568999999998664332


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                       ......++..|+|||.+.+..++.++||||||+++|+|++|+.||...       .............. .+....   
T Consensus       157 -~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~---  224 (256)
T cd08220         157 -KAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAA-------NLPALVLKIMSGTF-APISDR---  224 (256)
T ss_pred             -cccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccC-------chHHHHHHHHhcCC-CCCCCC---
Confidence             222346788999999998888999999999999999999999998632       11111122221111 111111   


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+.+++.+||+.||++|||+.|++++
T Consensus       225 ~~~~l~~li~~~l~~~p~~Rpt~~~ll~~  253 (256)
T cd08220         225 YSPDLRQLILSMLNLDPSKRPQLSQIMAQ  253 (256)
T ss_pred             cCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence            12247889999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=1.9e-34  Score=273.12  Aligned_cols=224  Identities=23%  Similarity=0.276  Sum_probs=180.0

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||++... +++.+|+|.+                        +|+++......+...+..++||
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            46889999999999999999774 6899999964                        3667777777788888999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++++|.+++....   .+++..+..++.|++.||+|||+.   +++|+||+|+||+++.++.+||+|||+++.....
T Consensus        81 e~~~~~~L~~~~~~~~---~l~~~~~~~~~~qil~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~  154 (290)
T cd05580          81 EYVPGGELFSHLRKSG---RFPEPVARFYAAQVVLALEYLHSL---DIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR  154 (290)
T ss_pred             ecCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEeeCCCccccCCC
Confidence            9999999999887653   588999999999999999999998   9999999999999999999999999999865433


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                         .....+++.|+|||.+.+...+.++||||||+++|||++|+.||....       ..............  .+... 
T Consensus       155 ---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-------~~~~~~~~~~~~~~--~~~~~-  221 (290)
T cd05580         155 ---TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDN-------PIQIYEKILEGKVR--FPSFF-  221 (290)
T ss_pred             ---CCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCC-------HHHHHHHHhcCCcc--CCccC-
Confidence               233468899999999988888999999999999999999999986321       11111122211111  11111 


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                        ...+.+++.+||..||.+||     +++|++++
T Consensus       222 --~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~~  254 (290)
T cd05580         222 --SPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNH  254 (290)
T ss_pred             --CHHHHHHHHHHccCCHHHccCcccCCHHHHHcC
Confidence              23477899999999999999     77777654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=1.4e-34  Score=274.40  Aligned_cols=241  Identities=19%  Similarity=0.199  Sum_probs=170.7

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc------------------------CCccccceEEEecCce-----
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH------------------------HSETEDSAFVVYSPQC-----  192 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~-----  192 (412)
                      ++|++.+.||+|+||.||+|... +++.||+|.++                        |+++......+...+.     
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            46889999999999999999764 68999999753                        2333333333443333     


Q ss_pred             EEEEEEeccCCceeeeeccCcc--cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC-CCcEEEeecC
Q 042435          193 MFFIYEYMERGSLFCVLRDDDE--AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS-NLEAFVADFG  269 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~--~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~-~~~~kl~DfG  269 (412)
                      .++||||+++ +|.+++.....  ...+++..+..++.||+.||+|||+.   +++||||||+||+++. ++.+||+|||
T Consensus        81 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~~~nil~~~~~~~~kl~dfg  156 (295)
T cd07837          81 LYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKH---GVMHRDLKPQNLLVDKQKGLLKIADLG  156 (295)
T ss_pred             EEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEecCCCeEEEeecc
Confidence            7999999985 78887754321  23589999999999999999999998   9999999999999998 8999999999


Q ss_pred             CccccCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcchh
Q 042435          270 TVRLLDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKIML  340 (412)
Q Consensus       270 la~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~~~  340 (412)
                      +++.............+++.|+|||++.+ ..++.++||||||+++|||++|..||........        ........
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (295)
T cd07837         157 LGRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVW  236 (295)
T ss_pred             cceecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhC
Confidence            98865433332333456889999998865 4578999999999999999999999863211000        00000000


Q ss_pred             hHH------h-hhccCCccc-hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          341 IDI------L-YQRLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       341 ~~~------~-~~~~~~~~~-~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...      . .+...+... .........+.+++.+||+.||++||+++|++.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~~  291 (295)
T cd07837         237 PGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALTH  291 (295)
T ss_pred             cchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence            000      0 000000000 0001123347889999999999999999999864

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3.8e-36  Score=289.58  Aligned_cols=225  Identities=25%  Similarity=0.341  Sum_probs=181.0

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      -|...+.||.|+||.||-|+. .+.++||||++                        +|+|.....+.+......|||||
T Consensus        27 lf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVME  106 (948)
T KOG0577|consen   27 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVME  106 (948)
T ss_pred             HHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHH
Confidence            355667899999999999965 67899999975                        68888888888888888999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      ||- |+-.+++.-..+  ++....+..|..+.+.||+|||++   +.||||||..|||+++.+.+||+|||.|....+. 
T Consensus       107 YCl-GSAsDlleVhkK--plqEvEIAAi~~gaL~gLaYLHS~---~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PA-  179 (948)
T KOG0577|consen  107 YCL-GSASDLLEVHKK--PLQEVEIAAITHGALQGLAYLHSH---NRIHRDIKAGNILLSEPGLVKLADFGSASIMAPA-  179 (948)
T ss_pred             HHh-ccHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHh---hHHhhhccccceEecCCCeeeeccccchhhcCch-
Confidence            994 587777765543  488888999999999999999999   9999999999999999999999999999865433 


Q ss_pred             CCccccccccccccccccc---CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          279 SNRTLQAGTYGYIALELVY---TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~---~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                         ..++|||.|||||++.   .+.|+-|+||||+|++..||...++|.-.+...       ..+.. +...-+|.... 
T Consensus       180 ---nsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNAM-------SALYH-IAQNesPtLqs-  247 (948)
T KOG0577|consen  180 ---NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM-------SALYH-IAQNESPTLQS-  247 (948)
T ss_pred             ---hcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchHH-------HHHHH-HHhcCCCCCCC-
Confidence               3578999999999985   567999999999999999999999996532110       01111 22222232222 


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                       .+....+..++..|+++-|.+|||.++++++-
T Consensus       248 -~eWS~~F~~Fvd~CLqKipqeRptse~ll~H~  279 (948)
T KOG0577|consen  248 -NEWSDYFRNFVDSCLQKIPQERPTSEELLKHR  279 (948)
T ss_pred             -chhHHHHHHHHHHHHhhCcccCCcHHHHhhcc
Confidence             23344588999999999999999999998874

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=1.8e-34  Score=272.79  Aligned_cols=227  Identities=23%  Similarity=0.329  Sum_probs=177.3

Q ss_pred             cccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          145 FHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      |...+.||+|++|.||++.. .+++.+|+|++                     +|+++......+...+..++++||+++
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~  100 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEG  100 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCC
Confidence            44457999999999999976 46889999965                     345555555566778889999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      ++|.+++...    .+++..+..++.|++.||+|||++   +++||||+|+||+++.++.++++|||++...........
T Consensus       101 ~~L~~~~~~~----~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~  173 (285)
T cd06648         101 GALTDIVTHT----RMNEEQIATVCLAVLKALSFLHAQ---GVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRK  173 (285)
T ss_pred             CCHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChhhEEEcCCCcEEEcccccchhhccCCcccc
Confidence            9999988763    488999999999999999999998   999999999999999999999999998876544333333


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...|+..|+|||...+..++.++||||||+++|||++|+.||....       ... ....+.....+.. .........
T Consensus       174 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~-------~~~-~~~~~~~~~~~~~-~~~~~~~~~  244 (285)
T cd06648         174 SLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEP-------PLQ-AMKRIRDNLPPKL-KNLHKVSPR  244 (285)
T ss_pred             cccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCC-------HHH-HHHHHHhcCCCCC-cccccCCHH
Confidence            4568899999999988889999999999999999999999986311       111 1111111111111 111112234


Q ss_pred             HHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          363 VSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      +.+++.+||+.+|++||++.+++++
T Consensus       245 l~~li~~~l~~~p~~Rpt~~~il~~  269 (285)
T cd06648         245 LRSFLDRMLVRDPAQRATAAELLNH  269 (285)
T ss_pred             HHHHHHHHcccChhhCcCHHHHccC
Confidence            8899999999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=2.2e-34  Score=271.56  Aligned_cols=239  Identities=21%  Similarity=0.245  Sum_probs=173.2

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEEe
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +|+..+.||+|++|.||+|... +++.||||+++                       |+++......+...+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            5888899999999999999774 68999999664                       44444445556778889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      ++ ++|.+++..... ..+++..+..++.|++.||+|||+.   +++||||+|+||+++.++.+||+|||+++.......
T Consensus        81 ~~-~~l~~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~lh~~---~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~  155 (284)
T cd07860          81 LH-QDLKKFMDASPL-SGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR  155 (284)
T ss_pred             cc-cCHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEeeccchhhcccCcc
Confidence            96 588887765332 2589999999999999999999998   999999999999999999999999999876544333


Q ss_pred             CcccccccccccccccccCcc-cCcccccHHHHHHHHHHHhCCCCccccccccc-------CCCCcch----hhHHhh--
Q 042435          280 NRTLQAGTYGYIALELVYTMV-VTEKCVIYSFGVVALEVLMGTHPGELLLSLSS-------SSGPKIM----LIDILY--  345 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~-~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~-------~~~~~~~----~~~~~~--  345 (412)
                      ......++..|+|||...+.. ++.++||||||+++|||+||+.||........       ...+...    ..+...  
T Consensus       156 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (284)
T cd07860         156 TYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYK  235 (284)
T ss_pred             ccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHH
Confidence            333445788999999887644 68899999999999999999999853211000       0000000    000000  


Q ss_pred             hccCCccch---h-hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 QRLSPPINQ---K-IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ~~~~~~~~~---~-~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .........   . .......+.+++.+||+.||++|||++|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~  281 (284)
T cd07860         236 PSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALAH  281 (284)
T ss_pred             hhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhcC
Confidence            000000000   0 00112236789999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=1.5e-34  Score=270.75  Aligned_cols=226  Identities=19%  Similarity=0.264  Sum_probs=164.0

Q ss_pred             eeeecCceEEEEEEeCCC---cEEEEEec----------------------cCCccccceEEEecCceEEEEEEeccCCc
Q 042435          150 CIGTGGYDSVYKAELPDG---KVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEYMERGS  204 (412)
Q Consensus       150 ~lG~G~~g~Vy~~~~~~~---~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~gs  204 (412)
                      .||+|+||.||+|...++   ..+++|.+                      +|+++......+......++||||+++|+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   81 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD   81 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence            589999999999975433   34566643                      46666666777788888999999999999


Q ss_pred             eeeeeccCcc-cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC--CCc
Q 042435          205 LFCVLRDDDE-AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS--SNR  281 (412)
Q Consensus       205 L~~~l~~~~~-~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~--~~~  281 (412)
                      |.++++.... ....++.....++.|+++||+|||+.   +++||||||+|||++.++.++|+|||++.......  ...
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~  158 (268)
T cd05086          82 LKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKH---NFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETE  158 (268)
T ss_pred             HHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CeeccCCccceEEEcCCccEEecccccccccCcchhhhcc
Confidence            9999875432 22466777889999999999999998   99999999999999999999999999986432211  112


Q ss_pred             ccccccccccccccccC-------cccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhc----cC
Q 042435          282 TLQAGTYGYIALELVYT-------MVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQR----LS  349 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~-------~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~----~~  349 (412)
                      ....++..|+|||++..       ..++.++||||||+++|||++ |..||....       ............    ..
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~-------~~~~~~~~~~~~~~~~~~  231 (268)
T cd05086         159 DDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLS-------DREVLNHVIKDQQVKLFK  231 (268)
T ss_pred             cCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCC-------HHHHHHHHHhhcccccCC
Confidence            33467889999998743       245789999999999999997 566775221       111111111111    11


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                      +.....   ....+.+++..|| .+|++||+++||++.|.
T Consensus       232 ~~~~~~---~~~~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         232 PQLELP---YSERWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             CccCCC---CcHHHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence            111111   1223677888999 67999999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=2e-34  Score=272.36  Aligned_cols=234  Identities=28%  Similarity=0.394  Sum_probs=183.2

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEecc--------------------CCccccceEEEecCceEEEEEE
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH--------------------HSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~--------------------~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      +.++.|+..+.||+|++|.||+|... +++.+|+|.++                    |+++......+...+..++++|
T Consensus        16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   95 (286)
T cd06614          16 DPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVME   95 (286)
T ss_pred             CccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEe
Confidence            56777888999999999999999875 68899999764                    3444444555677789999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++++|.+++....  ..+++..+..++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||++.......
T Consensus        96 ~~~~~~L~~~l~~~~--~~l~~~~~~~i~~~i~~~L~~lH~~---gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~  170 (286)
T cd06614          96 YMDGGSLTDIITQNF--VRMNEPQIAYVCREVLQGLEYLHSQ---NVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEK  170 (286)
T ss_pred             ccCCCcHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCChhhEEEcCCCCEEECccchhhhhccch
Confidence            999999999997653  2589999999999999999999998   99999999999999999999999999987654433


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      .......++..|+|||.+.+..++.++|+||||+++|||++|+.||....       .......+....... . .....
T Consensus       171 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~-------~~~~~~~~~~~~~~~-~-~~~~~  241 (286)
T cd06614         171 SKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREP-------PLRALFLITTKGIPP-L-KNPEK  241 (286)
T ss_pred             hhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCC-------HHHHHHHHHhcCCCC-C-cchhh
Confidence            33334457889999999988889999999999999999999999986321       111111111111111 1 11111


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+.+++.+||+.+|.+||++.+++++
T Consensus       242 ~~~~l~~li~~~l~~~p~~Rpt~~~il~~  270 (286)
T cd06614         242 WSPEFKDFLNKCLVKDPEKRPSAEELLQH  270 (286)
T ss_pred             CCHHHHHHHHHHhccChhhCcCHHHHhhC
Confidence            22347889999999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=3.3e-34  Score=268.58  Aligned_cols=233  Identities=24%  Similarity=0.353  Sum_probs=171.8

Q ss_pred             cccceeeeecCceEEEEEEeC----CCcEEEEEecc-----------------------CCccccceEEEecC------c
Q 042435          145 FHIRYCIGTGGYDSVYKAELP----DGKVVALKKLH-----------------------HSETEDSAFVVYSP------Q  191 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~----~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~------~  191 (412)
                      |.+.+.||+|+||.||+|.+.    +++.||||.+.                       |+++......+...      .
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            566789999999999999753    36889999653                       44444444433222      1


Q ss_pred             eEEEEEEeccCCceeeeeccCc---ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeec
Q 042435          192 CMFFIYEYMERGSLFCVLRDDD---EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADF  268 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~Df  268 (412)
                      ..++++||+++|+|.+++....   ....+++...+.++.|++.||+|||+.   +|+||||||+||++++++.+|++||
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~nili~~~~~~kl~df  157 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSK---NFIHRDLAARNCMLNENMTVCVADF  157 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccchhhEEEcCCCCEEECcc
Confidence            3478999999999987764321   123478899999999999999999998   9999999999999999999999999


Q ss_pred             CCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhh
Q 042435          269 GTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILY  345 (412)
Q Consensus       269 Gla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~  345 (412)
                      |+++.......  ......+++.|++||......++.++||||||+++|||++ |+.||....        .........
T Consensus       158 g~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~--------~~~~~~~~~  229 (273)
T cd05074         158 GLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVE--------NSEIYNYLI  229 (273)
T ss_pred             cccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCC--------HHHHHHHHH
Confidence            99986543221  1122345678999999988889999999999999999999 888875221        111111111


Q ss_pred             hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      .........   .....+.+++.+||+.+|++|||+.|+++.|+++
T Consensus       230 ~~~~~~~~~---~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         230 KGNRLKQPP---DCLEDVYELMCQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             cCCcCCCCC---CCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            111111111   1123488999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=2.9e-34  Score=271.03  Aligned_cols=239  Identities=23%  Similarity=0.286  Sum_probs=175.4

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ++|++.+.||+|+||.||+|... +++.||+|+++                       |+++......+...+..+++||
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e   80 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFE   80 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEe
Confidence            36889999999999999999875 58899999653                       4444444555667788999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |++++.+..+.....   .+++..+..++.|++.||+|||+.   +++|+||+|+||++++++.+||+|||++.......
T Consensus        81 ~~~~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~  154 (288)
T cd07833          81 YVERTLLELLEASPG---GLPPDAVRSYIWQLLQAIAYCHSH---NIIHRDIKPENILVSESGVLKLCDFGFARALRARP  154 (288)
T ss_pred             cCCCCHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEEeeecccccCCCc
Confidence            999877765554332   488999999999999999999998   99999999999999999999999999998765443


Q ss_pred             C-CcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccc---------cCCCCcch--h--hHH
Q 042435          279 S-NRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLS---------SSSGPKIM--L--IDI  343 (412)
Q Consensus       279 ~-~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~---------~~~~~~~~--~--~~~  343 (412)
                      . ......++..|+|||++.+. .++.++||||||+++|||++|+.||.......         ....+...  .  ...
T Consensus       155 ~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (288)
T cd07833         155 ASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPR  234 (288)
T ss_pred             cccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCcc
Confidence            2 22345678899999999887 78999999999999999999999986321000         00000000  0  000


Q ss_pred             hhh-ccCCccchhhH------HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          344 LYQ-RLSPPINQKII------QDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       344 ~~~-~~~~~~~~~~~------~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ... ...........      .....+.+++.+||..+|++|||+++++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  285 (288)
T cd07833         235 FAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQH  285 (288)
T ss_pred             ccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhcC
Confidence            000 00000000000      013458899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2e-34  Score=268.25  Aligned_cols=223  Identities=22%  Similarity=0.264  Sum_probs=170.0

Q ss_pred             eeeeecCceEEEEEEe-CCCcEEEEEecc-------------------------CCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAEL-PDGKVVALKKLH-------------------------HSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-------------------------~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      +.||+|+||.||+|.. .+++.||+|.++                         |+++......+...+..++|+||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            4689999999999976 468999999763                         33333444456677889999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      ++|.+++....   .+++..+..++.|++.||.|||+.   +++||||+|+||+++.++.++|+|||+++....    ..
T Consensus        82 ~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~----~~  151 (260)
T cd05611          82 GDCASLIKTLG---GLPEDWAKQYIAEVVLGVEDLHQR---GIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE----NK  151 (260)
T ss_pred             CCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEeecccceeccc----cc
Confidence            99999887543   478899999999999999999998   999999999999999999999999999875432    22


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...++..|+|||.+.+..++.++||||||+++|||++|..||...       ................+. .........
T Consensus       152 ~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~  223 (260)
T cd05611         152 KFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAE-------TPDAVFDNILSRRINWPE-EVKEFCSPE  223 (260)
T ss_pred             cCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCC-------CHHHHHHHHHhcccCCCC-cccccCCHH
Confidence            345788999999998888899999999999999999999998632       111111111111111110 001112234


Q ss_pred             HHHHHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          363 VSTIALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                      +.+++.+||+.||++||++.++.+.|.
T Consensus       224 ~~~~i~~~l~~~p~~R~~~~~~~~~l~  250 (260)
T cd05611         224 AVDLINRLLCMDPAKRLGANGYQEIKS  250 (260)
T ss_pred             HHHHHHHHccCCHHHccCCCcHHHHHc
Confidence            889999999999999997765555443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=3.1e-34  Score=267.91  Aligned_cols=231  Identities=23%  Similarity=0.363  Sum_probs=177.1

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEecc---------------------------CCccccceEEEecCceEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH---------------------------HSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~---------------------------~~~~~~~~~~~~~~~~~~l  195 (412)
                      +|+..+.||+|+||.||+|.. .+++.||+|.++                           |+++......+...+..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            477889999999999999975 578999999763                           4444455555777889999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC-cEEEeecCCcccc
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL-EAFVADFGTVRLL  274 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~-~~kl~DfGla~~~  274 (412)
                      |+||+++++|.+++....   .+++..+..++.|++.||+|||+.   +++|+||||+||+++.++ .++|+|||.+...
T Consensus        81 v~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~ql~~al~~LH~~---~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~  154 (268)
T cd06630          81 FVEWMAGGSVSHLLSKYG---AFKEAVIINYTEQLLRGLSYLHEN---QIIHRDVKGANLLIDSTGQRLRIADFGAAARL  154 (268)
T ss_pred             EEeccCCCcHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEccccccccc
Confidence            999999999999887543   588999999999999999999998   999999999999998775 5999999998766


Q ss_pred             CCCCC----CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCC
Q 042435          275 DVDSS----NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP  350 (412)
Q Consensus       275 ~~~~~----~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (412)
                      .....    ......++..|+|||.+.+..++.++||||+|+++||+++|..||.....    ........+.......+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~----~~~~~~~~~~~~~~~~~  230 (268)
T cd06630         155 AAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKH----SNHLALIFKIASATTAP  230 (268)
T ss_pred             ccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCC----cchHHHHHHHhccCCCC
Confidence            43311    11234678899999999888899999999999999999999999863210    00001111111111111


Q ss_pred             ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       351 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..+.   .....+.+++.+|+..+|++||++.|++++
T Consensus       231 ~~~~---~~~~~~~~~i~~~l~~~p~~R~~~~~ll~~  264 (268)
T cd06630         231 SIPE---HLSPGLRDVTLRCLELQPEDRPPSRELLKH  264 (268)
T ss_pred             CCch---hhCHHHHHHHHHHcCCCcccCcCHHHHhcC
Confidence            1111   122347889999999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=2.4e-34  Score=270.95  Aligned_cols=221  Identities=20%  Similarity=0.271  Sum_probs=167.8

Q ss_pred             eeeecCceEEEEEEe-CCCcEEEEEeccCC---------------------------ccccceEEEecCceEEEEEEecc
Q 042435          150 CIGTGGYDSVYKAEL-PDGKVVALKKLHHS---------------------------ETEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       150 ~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~~---------------------------~~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      .||+|+||.||+|.. .+++.||+|.+...                           ++......+...+..++||||++
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            489999999999976 46899999976432                           22222333556778999999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCc
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR  281 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~  281 (412)
                      +|+|.+++....   .+++..+..++.|+++||+|||+.   +++||||||+||+++.++.++|+|||+++......  .
T Consensus        81 g~~L~~~l~~~~---~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~--~  152 (278)
T cd05606          81 GGDLHYHLSQHG---VFSEAEMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK--P  152 (278)
T ss_pred             CCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEcCCCCHHHEEECCCCCEEEccCcCccccCccC--C
Confidence            999988876543   589999999999999999999998   99999999999999999999999999987553222  2


Q ss_pred             ccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          282 TLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ....|+..|+|||.+.+. .++.++||||+|+++|||++|+.||......     ....... .........+..   ..
T Consensus       153 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~-----~~~~~~~-~~~~~~~~~~~~---~s  223 (278)
T cd05606         153 HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK-----DKHEIDR-MTLTMAVELPDS---FS  223 (278)
T ss_pred             cCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCcc-----chHHHHH-HhhccCCCCCCc---CC
Confidence            234689999999998754 6889999999999999999999998732110     0001111 111111111111   12


Q ss_pred             HHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          361 ILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                      ..+.+++.+|+..+|++||     ++.|++++
T Consensus       224 ~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~  255 (278)
T cd05606         224 PELRSLLEGLLQRDVNRRLGCLGRGAQEVKEH  255 (278)
T ss_pred             HHHHHHHHHHhhcCHHhccCCCCCCHHHHHhC
Confidence            3478899999999999999     99999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.8e-35  Score=282.28  Aligned_cols=230  Identities=22%  Similarity=0.309  Sum_probs=175.9

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEecc------------------------CCccccceEEEecCceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ..|++.+.||+||.+.||++...+.+.+|+|++.                        +.++.....+...++.+|+|||
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE  440 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVME  440 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEee
Confidence            3588889999999999999999888999999652                        3344445555566889999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |=+ -+|..+|+..... ...| .+..+..|++.++.++|.+   +|||.||||.|.|+- .|.+||+|||+|..+..+.
T Consensus       441 ~Gd-~DL~kiL~k~~~~-~~~~-~lk~ywkqML~aV~~IH~~---gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DT  513 (677)
T KOG0596|consen  441 CGD-IDLNKILKKKKSI-DPDW-FLKFYWKQMLLAVKTIHQH---GIVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDT  513 (677)
T ss_pred             ccc-ccHHHHHHhccCC-CchH-HHHHHHHHHHHHHHHHHHh---ceeecCCCcccEEEE-eeeEEeeeechhcccCccc
Confidence            874 5899999876532 3445 6778999999999999999   999999999999985 5789999999999887654


Q ss_pred             CC--cccccccccccccccccCcc-----------cCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhh
Q 042435          279 SN--RTLQAGTYGYIALELVYTMV-----------VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY  345 (412)
Q Consensus       279 ~~--~~~~~gt~~y~aPE~~~~~~-----------~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~  345 (412)
                      ..  ....+||+.||+||.+....           .++++||||+|||||+|+.|+.||.......      ..+..+.+
T Consensus       514 TsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~------aKl~aI~~  587 (677)
T KOG0596|consen  514 TSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQI------AKLHAITD  587 (677)
T ss_pred             cceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHH------HHHHhhcC
Confidence            43  35678999999999986432           5679999999999999999999997432111      11223333


Q ss_pred             hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      +...-+.+....  ...+.+++..||.+||++|||+.|++++
T Consensus       588 P~~~Iefp~~~~--~~~li~~mK~CL~rdPkkR~si~eLLqh  627 (677)
T KOG0596|consen  588 PNHEIEFPDIPE--NDELIDVMKCCLARDPKKRWSIPELLQH  627 (677)
T ss_pred             CCccccccCCCC--chHHHHHHHHHHhcCcccCCCcHHHhcC
Confidence            322111111111  1127899999999999999999999976

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=3.1e-34  Score=271.93  Aligned_cols=237  Identities=21%  Similarity=0.227  Sum_probs=173.0

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEecC--ceEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVYSP--QCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~--~~~~lv  196 (412)
                      ++|++.+.||+|+||.||+|... +++.+|+|.++                       |+++......+...  ...++|
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence            57888899999999999999875 58899999764                       33433334444445  789999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||++ ++|.+++.....  .+++.....++.|++.||+|||+.   +++|+||||+||+++.++.++|+|||+++....
T Consensus        85 ~e~~~-~~L~~~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~  158 (293)
T cd07843          85 MEYVE-HDLKSLMETMKQ--PFLQSEVKCLMLQLLSGVAHLHDN---WILHRDLKTSNLLLNNRGILKICDFGLAREYGS  158 (293)
T ss_pred             ehhcC-cCHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCcEEEeecCceeeccC
Confidence            99997 488887765432  489999999999999999999998   999999999999999999999999999986654


Q ss_pred             CCCCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcchhhHH----
Q 042435          277 DSSNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKIMLIDI----  343 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~~~~~~----  343 (412)
                      .........++..|+|||.+.+. .++.++|+||||+++|||++|..||........        ...........    
T Consensus       159 ~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (293)
T cd07843         159 PLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELP  238 (293)
T ss_pred             CccccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccc
Confidence            43333344678899999988754 468899999999999999999999863211000        00000000000    


Q ss_pred             ----------hhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          344 ----------LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       344 ----------~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                                ....+....+..  .....+.+++.+||+.||++|||+.|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~l~~~p~~R~t~~ell~~  290 (293)
T cd07843         239 GAKKKTFTKYPYNQLRKKFPAL--SLSDNGFDLLNRLLTYDPAKRISAEDALKH  290 (293)
T ss_pred             hhcccccccccchhhhcccccc--CCChHHHHHHHHHhccCccccCCHHHHhcC
Confidence                      000000000000  012347789999999999999999999864

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=3.8e-34  Score=270.68  Aligned_cols=237  Identities=25%  Similarity=0.269  Sum_probs=176.5

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------------cCCccccceEEEec--CceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------HHSETEDSAFVVYS--PQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~~~~~~~~~~~~~~--~~~~~lv~  197 (412)
                      ++|+..+.||.|++|.||++.. .+++.+|+|.+                      +|+++......+..  ....++||
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence            4688889999999999999987 46889999965                      44555554444433  44789999


Q ss_pred             EeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          198 EYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      ||+++++|.+++.... ....+++.....++.|++.||+|||+.   +++|+||+|+||++++++.++|+|||++.....
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~  157 (287)
T cd06621          81 EYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSR---KIIHRDIKPSNILLTRKGQVKLCDFGVSGELVN  157 (287)
T ss_pred             EecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecCCeEEEeeccccccccc
Confidence            9999999988765321 123578899999999999999999998   999999999999999999999999999875432


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccc---
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN---  353 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  353 (412)
                      ...  ....++..|+|||.+.+..++.++||||||+++|||++|+.||+....  .... .......+.....+...   
T Consensus       158 ~~~--~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~  232 (287)
T cd06621         158 SLA--GTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGE--PPLG-PIELLSYIVNMPNPELKDEP  232 (287)
T ss_pred             ccc--ccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccC--CCCC-hHHHHHHHhcCCchhhccCC
Confidence            221  234578899999999888999999999999999999999999874321  0001 11111111111111000   


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .........+.+++.+||+.+|++|||+.|++++
T Consensus       233 ~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~~  266 (287)
T cd06621         233 GNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLEH  266 (287)
T ss_pred             CCCCchHHHHHHHHHHHcCCCcccCCCHHHHHhC
Confidence            0001122347899999999999999999999985

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=5.9e-34  Score=272.05  Aligned_cols=228  Identities=25%  Similarity=0.325  Sum_probs=173.8

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ..+.|+..+.||+|+||.||+|... +++.||+|.+                        +|+++......+...+..++
T Consensus        13 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~l   92 (307)
T cd06607          13 PEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWL   92 (307)
T ss_pred             cchhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEE
Confidence            3456888899999999999999774 6899999965                        34555555566778888999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      |+||++ |++.+++....  ..+++..+..++.|++.||.|||+.   +++||||+|+||++++++.++|+|||++....
T Consensus        93 v~e~~~-g~l~~~~~~~~--~~l~~~~~~~~~~ql~~~L~~LH~~---~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~  166 (307)
T cd06607          93 VMEYCL-GSASDILEVHK--KPLQEVEIAAICHGALQGLAYLHSH---ERIHRDIKAGNILLTEPGTVKLADFGSASLVS  166 (307)
T ss_pred             EHHhhC-CCHHHHHHHcc--cCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEECCCCCEEEeecCcceecC
Confidence            999997 56766654322  2489999999999999999999998   99999999999999999999999999987653


Q ss_pred             CCCCCccccccccccccccccc---CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          276 VDSSNRTLQAGTYGYIALELVY---TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~---~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ..    ....++..|+|||++.   ...++.++||||||+++|||+||+.||.....       ........ ....+..
T Consensus       167 ~~----~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~-------~~~~~~~~-~~~~~~~  234 (307)
T cd06607         167 PA----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA-------MSALYHIA-QNDSPTL  234 (307)
T ss_pred             CC----CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccH-------HHHHHHHh-cCCCCCC
Confidence            32    2345788999999874   45688899999999999999999999863210       00011111 1111111


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      .  .......+.+++.+||+.||++||++.+++.+.
T Consensus       235 ~--~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~  268 (307)
T cd06607         235 S--SNDWSDYFRNFVDSCLQKIPQDRPSSEELLKHR  268 (307)
T ss_pred             C--chhhCHHHHHHHHHHhcCChhhCcCHHHHhcCh
Confidence            0  111233488999999999999999999998763

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=4.4e-34  Score=269.35  Aligned_cols=240  Identities=20%  Similarity=0.267  Sum_probs=175.4

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEecc----------------------CCccccceEEEecCceEEEEEEec
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH----------------------HSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~----------------------~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      +|+..+.||+|++|.||+|... +|+.||+|.++                      |+++......+...+..++||||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecC
Confidence            5888999999999999999875 68999999653                      445555555677788899999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++ +|.+++........+++..+..++.|++.||+|||+.   +++||||||+||++++++.++++|||+++........
T Consensus        81 ~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~~  156 (284)
T cd07836          81 DK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHEN---RVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNT  156 (284)
T ss_pred             Cc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCccc
Confidence            85 8888776544333589999999999999999999998   9999999999999999999999999999765433333


Q ss_pred             cccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccccc-------C-CCCcchhhHHhh-hccCC
Q 042435          281 RTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS-------S-SGPKIMLIDILY-QRLSP  350 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~-------~-~~~~~~~~~~~~-~~~~~  350 (412)
                      .....++..|++||++.+. .++.++||||||+++|||++|+.||........       . ......+..... +....
T Consensus       157 ~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (284)
T cd07836         157 FSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKP  236 (284)
T ss_pred             cccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhcc
Confidence            3344578899999988654 578899999999999999999999863211000       0 000000000000 00000


Q ss_pred             cc---chhh-----HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          351 PI---NQKI-----IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       351 ~~---~~~~-----~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..   ....     ......+.+++.+|++.||.+||++.|++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~  281 (284)
T cd07836         237 TFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQH  281 (284)
T ss_pred             cccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            00   0000     0112347789999999999999999999864

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=2.1e-34  Score=267.81  Aligned_cols=227  Identities=21%  Similarity=0.252  Sum_probs=176.6

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEecc------------------------CCccccceEEEecCceEEEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      +|++.+.||+|+||.||+|... +++.||+|.+.                        |+++......+..+...++|+|
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            5888999999999999999875 58999999653                        4444444444667888999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++++|.+++....   .+++.....++.|+++||.|||+.   +++|+||+|+||++++++.++|+|||++.......
T Consensus        81 ~~~~~~L~~~l~~~~---~l~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~  154 (258)
T cd05578          81 LLLGGDLRYHLSQKV---KFSEEQVKFWICEIVLALEYLHSK---GIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDT  154 (258)
T ss_pred             CCCCCCHHHHHHhcC---CcCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEEcCCCCEEEeecccccccCCCc
Confidence            999999999887652   588999999999999999999998   99999999999999999999999999987654332


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                       ......|+..|+|||.+.+..++.++|+||||+++|+|++|+.||......     ........... .....+.   .
T Consensus       155 -~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~-----~~~~~~~~~~~-~~~~~~~---~  224 (258)
T cd05578         155 -LTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRT-----IRDQIRAKQET-ADVLYPA---T  224 (258)
T ss_pred             -cccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCcc-----HHHHHHHHhcc-ccccCcc---c
Confidence             223456888999999998888999999999999999999999998733110     01111111111 1111111   1


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCH--HHHHH
Q 042435          359 DIILVSTIALACLRSKPKSRPTM--QRISQ  386 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~--~evl~  386 (412)
                      ....+.+++.+||+.||.+||++  +|+++
T Consensus       225 ~~~~~~~~i~~~l~~~p~~R~~~~~~~l~~  254 (258)
T cd05578         225 WSTEAIDAINKLLERDPQKRLGDNLKDLKN  254 (258)
T ss_pred             CcHHHHHHHHHHccCChhHcCCccHHHHhc
Confidence            22347899999999999999999  66553

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=100.00  E-value=8e-35  Score=281.99  Aligned_cols=232  Identities=25%  Similarity=0.328  Sum_probs=185.3

Q ss_pred             cccceeeeecCceEEEEEEeCC---C--cEEEEEe----------------------ccCCccccceEEEecCceEEEEE
Q 042435          145 FHIRYCIGTGGYDSVYKAELPD---G--KVVALKK----------------------LHHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~~---~--~~vAvK~----------------------l~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ....++||.|.||.||+|.+.+   |  -.||||.                      ++|+++.+..++|. .+..|+||
T Consensus       391 Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~-e~P~Wivm  469 (974)
T KOG4257|consen  391 ITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCV-EQPMWIVM  469 (974)
T ss_pred             ccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeee-ccceeEEE
Confidence            3445789999999999997632   3  3578883                      57888888888876 46689999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      |.++.|.|..+|+....  .++......++.||+.||+|||+.   ..|||||..+|||+.....+|++|||+++.+..+
T Consensus       470 EL~~~GELr~yLq~nk~--sL~l~tL~ly~~Qi~talaYLeSk---rfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~  544 (974)
T KOG4257|consen  470 ELAPLGELREYLQQNKD--SLPLRTLTLYCYQICTALAYLESK---RFVHRDIAARNILVSSPQCVKLADFGLSRYLEDD  544 (974)
T ss_pred             ecccchhHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHhh---chhhhhhhhhheeecCcceeeecccchhhhcccc
Confidence            99999999999987654  488888899999999999999999   9999999999999999999999999999988765


Q ss_pred             CCCc-ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          278 SSNR-TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       278 ~~~~-~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      .... +...-.+.|||||.+...+++.+||||-|||++||++. |..||....       .... ...+...-+.|.++ 
T Consensus       545 ~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvk-------NsDV-I~~iEnGeRlP~P~-  615 (974)
T KOG4257|consen  545 AYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVK-------NSDV-IGHIENGERLPCPP-  615 (974)
T ss_pred             chhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCcccccc-------ccce-EEEecCCCCCCCCC-
Confidence            4433 33344678999999999999999999999999999987 999998431       1111 11122222222222 


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                        .+...+..++.+||+.||.+||++.|+...|+++..
T Consensus       616 --nCPp~LYslmskcWayeP~kRPrftei~~~lsdv~q  651 (974)
T KOG4257|consen  616 --NCPPALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQ  651 (974)
T ss_pred             --CCChHHHHHHHHHhccCcccCCcHHHHHHHHHHHHH
Confidence              333448899999999999999999999999877654

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=1.1e-33  Score=266.77  Aligned_cols=230  Identities=22%  Similarity=0.247  Sum_probs=172.5

Q ss_pred             cccceeeeecCceEEEEEEeC-CCcEEEEEecc--------------------------CCccccceEEEecCce-----
Q 042435          145 FHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH--------------------------HSETEDSAFVVYSPQC-----  192 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~--------------------------~~~~~~~~~~~~~~~~-----  192 (412)
                      |++.+.||+|+||.||+|..+ +++.||+|+++                          |+++......+...+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            567889999999999999886 48999999774                          2333333444555554     


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .+++|||++ ++|.+++..... ..+++..+..++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||++.
T Consensus        81 ~~l~~e~~~-~~l~~~l~~~~~-~~l~~~~~~~~~~~i~~al~~LH~~---~i~h~~l~~~nili~~~~~~~l~dfg~~~  155 (287)
T cd07838          81 LTLVFEHVD-QDLATYLSKCPK-PGLPPETIKDLMRQLLRGVDFLHSH---RIVHRDLKPQNILVTSDGQVKIADFGLAR  155 (287)
T ss_pred             eEEEehhcc-cCHHHHHHHccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhEEEccCCCEEEeccCcce
Confidence            899999997 488887765432 2489999999999999999999998   99999999999999999999999999998


Q ss_pred             ccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhh-------
Q 042435          273 LLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY-------  345 (412)
Q Consensus       273 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~-------  345 (412)
                      ....... .....++..|+|||.+.+..++.++|+||||+++|||++|+.||.....       ......+.+       
T Consensus       156 ~~~~~~~-~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  227 (287)
T cd07838         156 IYSFEMA-LTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSE-------ADQLDKIFDVIGLPSE  227 (287)
T ss_pred             eccCCcc-cccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCCh-------HHHHHHHHHHcCCCCh
Confidence            7643322 1233578899999999988899999999999999999999998863211       000111110       


Q ss_pred             ---------------hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 ---------------QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ---------------~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                                     .................+.+++.+||+.||++||++.|++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~~  284 (287)
T cd07838         228 EEWPRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQH  284 (287)
T ss_pred             HhcCCCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhcC
Confidence                           000010011111223457889999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=3.5e-35  Score=286.21  Aligned_cols=223  Identities=24%  Similarity=0.336  Sum_probs=177.4

Q ss_pred             ceeeeecCceEEEEEEe-CCCcEEE-------------------------EEeccCCccccceEEEecC--ceEEEEEEe
Q 042435          148 RYCIGTGGYDSVYKAEL-PDGKVVA-------------------------LKKLHHSETEDSAFVVYSP--QCMFFIYEY  199 (412)
Q Consensus       148 ~~~lG~G~~g~Vy~~~~-~~~~~vA-------------------------vK~l~~~~~~~~~~~~~~~--~~~~lv~ey  199 (412)
                      ..+||+|+|-+||||.. .+|..||                         +|-|+|+|+.+......+.  .+.-+|+|.
T Consensus        45 ~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL  124 (632)
T KOG0584|consen   45 DEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITEL  124 (632)
T ss_pred             hhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeec
Confidence            35799999999999955 3465554                         6678999999988776554  458899999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC-CcEEEeecCCccccCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN-LEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~-~~~kl~DfGla~~~~~~~  278 (412)
                      |..|+|+.|++..+   .++.....+|++||++||.|||++ .|+|+|||||.+||+++.+ |.+||+|.|+|+......
T Consensus       125 ~TSGtLr~Y~kk~~---~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~  200 (632)
T KOG0584|consen  125 FTSGTLREYRKKHR---RVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSH  200 (632)
T ss_pred             ccCCcHHHHHHHhc---cCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHhhccc
Confidence            99999999998776   588889999999999999999998 7899999999999999854 899999999999775443


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      .  ....|||.|||||+.. ..|++..||||||++++||+|+..||..-       .....+..-+...+.|.... ...
T Consensus       201 a--ksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC-------~n~AQIYKKV~SGiKP~sl~-kV~  269 (632)
T KOG0584|consen  201 A--KSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSEC-------TNPAQIYKKVTSGIKPAALS-KVK  269 (632)
T ss_pred             c--ceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhh-------CCHHHHHHHHHcCCCHHHhh-ccC
Confidence            2  3378999999999876 78999999999999999999999998732       11112222222233221111 011


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                       ...+.+++.+|+.. .++|||+.|++++
T Consensus       270 -dPevr~fIekCl~~-~~~R~sa~eLL~d  296 (632)
T KOG0584|consen  270 -DPEVREFIEKCLAT-KSERLSAKELLKD  296 (632)
T ss_pred             -CHHHHHHHHHHhcC-chhccCHHHHhhC
Confidence             23489999999999 9999999999875

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=6.9e-34  Score=268.12  Aligned_cols=238  Identities=24%  Similarity=0.313  Sum_probs=175.0

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEEe
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +|++.+.||+|+||.||+|.. .+|+.||+|++.                       |+++......+......++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   80 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEY   80 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecc
Confidence            478889999999999999987 468999999753                       44455555556778889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      + +++|.+++....  ..+++.++..++.|++.||+|||+.   +++|+||||+||+++.++.++++|||++........
T Consensus        81 ~-~~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~  154 (286)
T cd07832          81 M-PSDLSEVLRDEE--RPLPEAQVKSYMRMLLKGVAYMHAN---GIMHRDLKPANLLISADGVLKIADFGLARLFSEEEP  154 (286)
T ss_pred             c-CCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCC
Confidence            9 999999886543  2589999999999999999999998   999999999999999999999999999886644321


Q ss_pred             -CcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccc------cC-CCCcc-h------hhHH
Q 042435          280 -NRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLS------SS-SGPKI-M------LIDI  343 (412)
Q Consensus       280 -~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~------~~-~~~~~-~------~~~~  343 (412)
                       ......++..|+|||.+.+. .++.++||||+|+++|||+||..||.......      .. ..+.. .      +.+.
T Consensus       155 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (286)
T cd07832         155 RLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDY  234 (286)
T ss_pred             CccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcchh
Confidence             22345688999999998654 46889999999999999999987775221000      00 00000 0      0000


Q ss_pred             ---hhhccCC-ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          344 ---LYQRLSP-PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       344 ---~~~~~~~-~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                         ....... +...........+.+++.+|++.||++|||+++++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h  282 (286)
T cd07832         235 NKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRH  282 (286)
T ss_pred             hcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence               0000000 0000000112458899999999999999999999875

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=4.1e-34  Score=269.56  Aligned_cols=238  Identities=21%  Similarity=0.224  Sum_probs=172.9

Q ss_pred             cccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEEec
Q 042435          145 FHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      |++.+.||+|++|.||+|.. .+|+.||+|++.                       |+++......+...+..+++|||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            56778999999999999976 479999999764                       344444445577788999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      + ++|.+++..... ..+++..+..++.|+++||+|||+.   +++||||+|+||+++.++.++|+|||+++........
T Consensus        81 ~-~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~L~~lH~~---~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~  155 (283)
T cd07835          81 D-LDLKKYMDSSPL-TGLDPPLIKSYLYQLLQGIAYCHSH---RVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRT  155 (283)
T ss_pred             C-cCHHHHHhhCCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCcEEEeecccccccCCCccc
Confidence            5 689888765432 2489999999999999999999998   9999999999999999999999999999765433333


Q ss_pred             cccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccccc-------CCCCcch-------hhHHhh
Q 042435          281 RTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS-------SSGPKIM-------LIDILY  345 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~-------~~~~~~~-------~~~~~~  345 (412)
                      .....++..|+|||++.+. .++.++||||||+++|||++|+.||........       ...+...       ..+...
T Consensus       156 ~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (283)
T cd07835         156 YTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKP  235 (283)
T ss_pred             cCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhh
Confidence            3334568899999987654 578899999999999999999999863211000       0000000       000000


Q ss_pred             hc--cC-CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 QR--LS-PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ~~--~~-~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..  .. .............+.+++.+||+.||++|||++|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~  280 (283)
T cd07835         236 TFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQH  280 (283)
T ss_pred             hcccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence            00  00 00000001111347789999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=9.8e-34  Score=261.01  Aligned_cols=229  Identities=28%  Similarity=0.396  Sum_probs=178.1

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEeccC---------------------CccccceEEEecCceEEEEEEecc
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHH---------------------SETEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~---------------------~~~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      +|+..+.||+|++|.||++... +++.+++|+++.                     +++......+......++++||++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~   80 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCS   80 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCC
Confidence            4778899999999999999875 689999997643                     333333445666788999999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCc
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR  281 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~  281 (412)
                      +++|.+++....  ..+++..+..++.|++.||+|||+.   +++||||+|+||++++++.++|+|||.+........ .
T Consensus        81 ~~~L~~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~-~  154 (253)
T cd05122          81 GGSLKDLLKSTN--QTLTESQIAYVCKELLKGLEYLHSN---GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA-R  154 (253)
T ss_pred             CCcHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHhhcC---CEecCCCCHHHEEEccCCeEEEeecccccccccccc-c
Confidence            999999887653  2589999999999999999999998   999999999999999999999999999886654332 3


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDII  361 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (412)
                      ....++..|+|||.+.+..++.++||||||+++|+|++|+.||....       ....... ......+.. ........
T Consensus       155 ~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~-------~~~~~~~-~~~~~~~~~-~~~~~~~~  225 (253)
T cd05122         155 NTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELP-------PMKALFK-IATNGPPGL-RNPEKWSD  225 (253)
T ss_pred             cceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCc-------hHHHHHH-HHhcCCCCc-CcccccCH
Confidence            34568889999999988889999999999999999999999986321       1111111 111111111 11111123


Q ss_pred             HHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          362 LVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       362 ~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .+.+++.+||+.||++|||+.|++++
T Consensus       226 ~~~~~i~~~l~~~p~~R~t~~~~l~~  251 (253)
T cd05122         226 EFKDFLKKCLQKNPEKRPTAEQLLKH  251 (253)
T ss_pred             HHHHHHHHHccCChhhCCCHHHHhcC
Confidence            48899999999999999999999864

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=4.6e-34  Score=271.02  Aligned_cols=223  Identities=23%  Similarity=0.344  Sum_probs=174.2

Q ss_pred             eeeeecCceEEEEEEe-CCCcEEEEEecc---------------------CCccccceEEEecCceEEEEEEeccCCcee
Q 042435          149 YCIGTGGYDSVYKAEL-PDGKVVALKKLH---------------------HSETEDSAFVVYSPQCMFFIYEYMERGSLF  206 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~---------------------~~~~~~~~~~~~~~~~~~lv~ey~~~gsL~  206 (412)
                      .+||+|+||.||++.. .+++.||+|++.                     |+++......+...+..++||||+++++|.
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~  105 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALT  105 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcHH
Confidence            5799999999999977 478999999753                     445555555677788999999999999999


Q ss_pred             eeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcccccc
Q 042435          207 CVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAG  286 (412)
Q Consensus       207 ~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~g  286 (412)
                      +++...    .+++.....++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||++..............|
T Consensus       106 ~~~~~~----~~~~~~~~~~~~ql~~~l~~lH~~---givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~  178 (292)
T cd06657         106 DIVTHT----RMNEEQIAAVCLAVLKALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVG  178 (292)
T ss_pred             HHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEcccccceeccccccccccccc
Confidence            877543    378999999999999999999998   9999999999999999999999999998765433333334568


Q ss_pred             cccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHH
Q 042435          287 TYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTI  366 (412)
Q Consensus       287 t~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  366 (412)
                      +..|+|||.+.+..++.++|+||||+++|||++|+.||....        ................ .........+.++
T Consensus       179 ~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l  249 (292)
T cd06657         179 TPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP--------PLKAMKMIRDNLPPKL-KNLHKVSPSLKGF  249 (292)
T ss_pred             CccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--------HHHHHHHHHhhCCccc-CCcccCCHHHHHH
Confidence            899999999988889999999999999999999999986211        1111112222221111 0111112347788


Q ss_pred             HHhcCcCCCCCCCCHHHHHHH
Q 042435          367 ALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       367 ~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      +.+||+.||.+||++.+++++
T Consensus       250 i~~~l~~~P~~R~~~~~ll~~  270 (292)
T cd06657         250 LDRLLVRDPAQRATAAELLKH  270 (292)
T ss_pred             HHHHHhCCcccCcCHHHHhcC
Confidence            999999999999999999884

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=1.1e-33  Score=266.09  Aligned_cols=235  Identities=21%  Similarity=0.237  Sum_probs=170.4

Q ss_pred             cccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEecC--ceEEEEEE
Q 042435          145 FHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVYSP--QCMFFIYE  198 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~--~~~~lv~e  198 (412)
                      |++.+.||+|+||.||+|.. .+++.||+|+++                       |+++......+.+.  +..++|+|
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence            56778999999999999976 468999999753                       34444445556665  78999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |++ |+|.+.+....  ..++|.++..++.|++.||+|||+.   +++||||||+||+++. +.+||+|||+++......
T Consensus        81 ~~~-~~l~~~l~~~~--~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~  153 (282)
T cd07831          81 LMD-MNLYELIKGRK--RPLPEKRVKSYMYQLLKSLDHMHRN---GIFHRDIKPENILIKD-DILKLADFGSCRGIYSKP  153 (282)
T ss_pred             cCC-ccHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEcC-CCeEEEecccccccccCC
Confidence            996 58877776533  2589999999999999999999998   9999999999999999 999999999998654332


Q ss_pred             CCccccccccccccccccc-CcccCcccccHHHHHHHHHHHhCCCCcccccccc------cC-CCCcchhhHHhhhc--c
Q 042435          279 SNRTLQAGTYGYIALELVY-TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS------SS-SGPKIMLIDILYQR--L  348 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~-~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~------~~-~~~~~~~~~~~~~~--~  348 (412)
                      . .....++..|+|||.+. +..++.++|||||||++|||++|..||.......      .. ..............  .
T Consensus       154 ~-~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (282)
T cd07831         154 P-YTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHM  232 (282)
T ss_pred             C-cCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccccc
Confidence            2 12345788999999765 4557889999999999999999999986321100      00 00000000000000  0


Q ss_pred             CCcc--------chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          349 SPPI--------NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       349 ~~~~--------~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....        ..........+.+++.+||+.+|++||++++++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~  279 (282)
T cd07831         233 NYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALRH  279 (282)
T ss_pred             cccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhhC
Confidence            0000        00001123458899999999999999999999865

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=8.3e-36  Score=309.17  Aligned_cols=234  Identities=26%  Similarity=0.313  Sum_probs=187.6

Q ss_pred             HHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEe-----------------------ccCCccccceEEEecCceEE
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKK-----------------------LHHSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~-----------------------l~~~~~~~~~~~~~~~~~~~  194 (412)
                      ...+-+|.-...||.|.||.||-|.. .+|+..|+|.                       ++|+|+++..++-...+..+
T Consensus      1231 snV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~ 1310 (1509)
T KOG4645|consen 1231 SNVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVY 1310 (1509)
T ss_pred             ccceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHH
Confidence            34556788888999999999999965 6788899883                       57999999999999999999


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      |.||||++|+|.+.+...+   -.+......+..|++.|++|||++   ||||||+||.||+++.++.+|++|||.|..+
T Consensus      1311 IFMEyC~~GsLa~ll~~gr---i~dE~vt~vyt~qll~gla~LH~~---gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki 1384 (1509)
T KOG4645|consen 1311 IFMEYCEGGSLASLLEHGR---IEDEMVTRVYTKQLLEGLAYLHEH---GIVHRDIKPANILLDFNGLIKYGDFGSAVKI 1384 (1509)
T ss_pred             HHHHHhccCcHHHHHHhcc---hhhhhHHHHHHHHHHHHHHHHHhc---CceecCCCccceeeecCCcEEeecccceeEe
Confidence            9999999999999987654   355555666889999999999999   9999999999999999999999999999877


Q ss_pred             CCCCCC----cccccccccccccccccCcc---cCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhc
Q 042435          275 DVDSSN----RTLQAGTYGYIALELVYTMV---VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQR  347 (412)
Q Consensus       275 ~~~~~~----~~~~~gt~~y~aPE~~~~~~---~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~  347 (412)
                      ......    .....||+.|||||++.+..   ...+.||||+||+++||+||+.||...       +.+..++-.+...
T Consensus      1385 ~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~-------dne~aIMy~V~~g 1457 (1509)
T KOG4645|consen 1385 KNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAEL-------DNEWAIMYHVAAG 1457 (1509)
T ss_pred             cCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhc-------cchhHHHhHHhcc
Confidence            654322    23467999999999997643   456899999999999999999998733       2223333333333


Q ss_pred             cCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          348 LSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      -.|+.+..   ....-.+++.+|+..||+.|.++.|++++-
T Consensus      1458 h~Pq~P~~---ls~~g~dFle~Cl~~dP~~Rw~~~qlle~~ 1495 (1509)
T KOG4645|consen 1458 HKPQIPER---LSSEGRDFLEHCLEQDPKMRWTASQLLEHA 1495 (1509)
T ss_pred             CCCCCchh---hhHhHHHHHHHHHhcCchhhhHHHHHHHhh
Confidence            34444433   233467899999999999999999887764

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=7.2e-34  Score=270.01  Aligned_cols=232  Identities=21%  Similarity=0.259  Sum_probs=173.0

Q ss_pred             cCcccceeeeecCceEEEEEEeCC-CcEEEEEecc-----------------------CCccccceEEEecCceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPD-GKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~-~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ++|++.+.||+|+||.||+|...+ ++.||||.++                       |+++......+......+++||
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e   94 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICME   94 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEee
Confidence            568888999999999999998864 8999999764                       3344444555777888999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |++ ++|.+++.....  .+++..+..++.|++.||+|||+.+  +++||||+|+||++++++.+||+|||++.......
T Consensus        95 ~~~-~~l~~l~~~~~~--~l~~~~~~~i~~~i~~~l~~lH~~~--~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~  169 (296)
T cd06618          95 LMS-TCLDKLLKRIQG--PIPEDILGKMTVAIVKALHYLKEKH--GVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSK  169 (296)
T ss_pred             ccC-cCHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhhC--CEecCCCcHHHEEEcCCCCEEECccccchhccCCC
Confidence            985 466665544222  5899999999999999999999732  89999999999999999999999999987654322


Q ss_pred             CCcccccccccccccccccCcc----cCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          279 SNRTLQAGTYGYIALELVYTMV----VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~----~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      . .....++..|+|||.+.+..    ++.++||||||+++|||++|+.||....      ............... ....
T Consensus       170 ~-~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~------~~~~~~~~~~~~~~~-~~~~  241 (296)
T cd06618         170 A-KTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCK------TEFEVLTKILQEEPP-SLPP  241 (296)
T ss_pred             c-ccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcch------hHHHHHHHHhcCCCC-CCCC
Confidence            1 22335788999999987553    7889999999999999999999986311      001111122222111 1100


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      . ......+.+++.+||+.||++||++.+++++-
T Consensus       242 ~-~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~  274 (296)
T cd06618         242 N-EGFSPDFCSFVDLCLTKDHRKRPKYRELLQHP  274 (296)
T ss_pred             C-CCCCHHHHHHHHHHccCChhhCCCHHHHhcCh
Confidence            0 01223478899999999999999999998763

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=1.1e-33  Score=270.34  Aligned_cols=241  Identities=23%  Similarity=0.261  Sum_probs=171.7

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEecC--ceEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVYSP--QCMF  194 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~--~~~~  194 (412)
                      ..++|++.+.||+|+||.||+|.. .+|+.||+|.++                       |+++......+...  +..+
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIF   84 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEE
Confidence            346799999999999999999977 468999999764                       22333333333322  5689


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      +||||+.+ +|.+++....  ..+++.++..++.|++.||+|||+.   +++||||||+||++++++.+||+|||+++..
T Consensus        85 lv~e~~~~-~l~~~l~~~~--~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~  158 (309)
T cd07845          85 LVMEYCEQ-DLASLLDNMP--TPFSESQVKCLMLQLLRGLQYLHEN---FIIHRDLKVSNLLLTDKGCLKIADFGLARTY  158 (309)
T ss_pred             EEEecCCC-CHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccceeeec
Confidence            99999964 7877776432  2589999999999999999999998   9999999999999999999999999999876


Q ss_pred             CCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccc------cC--CCCcchhhHHh-
Q 042435          275 DVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS------SS--SGPKIMLIDIL-  344 (412)
Q Consensus       275 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~------~~--~~~~~~~~~~~-  344 (412)
                      ...........++..|+|||.+.+ ..++.++||||||+++|||++|+.||.......      ..  ........... 
T Consensus       159 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (309)
T cd07845         159 GLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSD  238 (309)
T ss_pred             CCccCCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhhc
Confidence            543333333346788999999865 457899999999999999999999986321100      00  00000000000 


Q ss_pred             ----hh-ccCCccchh----hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          345 ----YQ-RLSPPINQK----IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       345 ----~~-~~~~~~~~~----~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                          .. .........    .......+.+++.+|++.||++|||++|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h  290 (309)
T cd07845         239 LPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALES  290 (309)
T ss_pred             ccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhcC
Confidence                00 000000000    00113347789999999999999999999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=1.6e-33  Score=260.72  Aligned_cols=230  Identities=27%  Similarity=0.350  Sum_probs=180.0

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEEe
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +|++.+.||+|+||.||++... +++.+|+|++.                       |+++......+......++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            4788899999999999999774 68999999764                       33444444456667889999999


Q ss_pred             ccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          200 MERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       200 ~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      +++++|.+++.... ....+++..+..++.+++.||+|||+.   +++|+||+|+||+++.++.++|+|||++.......
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~---~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~  157 (258)
T cd08215          81 ADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSR---KILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTV  157 (258)
T ss_pred             cCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHHeEEcCCCcEEECCccceeecccCc
Confidence            99999999887642 123689999999999999999999998   99999999999999999999999999998665443


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      .......|++.|+|||...+..++.++|+||+|+++++|++|+.||....       ........... ...+.+.   .
T Consensus       158 ~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~-------~~~~~~~~~~~-~~~~~~~---~  226 (258)
T cd08215         158 DLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGEN-------LLELALKILKG-QYPPIPS---Q  226 (258)
T ss_pred             ceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCc-------HHHHHHHHhcC-CCCCCCC---C
Confidence            23334568889999999988889999999999999999999999986321       11111111111 1111111   1


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+.+++.+||..+|++|||+.|++++
T Consensus       227 ~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~  255 (258)
T cd08215         227 YSSELRNLVSSLLQKDPEERPSIAQILQS  255 (258)
T ss_pred             CCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            22347889999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=8.9e-34  Score=268.15  Aligned_cols=234  Identities=22%  Similarity=0.300  Sum_probs=175.7

Q ss_pred             CcccceeeeecCceEEEEEEe----CCCcEEEEEecc--------------------------CCccccceEEEecCceE
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL----PDGKVVALKKLH--------------------------HSETEDSAFVVYSPQCM  193 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~----~~~~~vAvK~l~--------------------------~~~~~~~~~~~~~~~~~  193 (412)
                      +|++.+.||+|+||.||++..    .+++.||||.++                          |+++......+..+...
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~   80 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL   80 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence            477889999999999999964    357889999764                          23333334445667788


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ++||||+++|+|.+++....   .+++.....++.|+++||+|||+.   +++||||||+||+++.++.++|+|||+++.
T Consensus        81 ~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~ql~~~l~~lH~~---~~~H~dl~p~nil~~~~~~~~l~dfg~~~~  154 (288)
T cd05583          81 HLILDYVNGGELFTHLYQRE---HFTESEVRVYIAEIVLALDHLHQL---GIIYRDIKLENILLDSEGHVVLTDFGLSKE  154 (288)
T ss_pred             EEEEecCCCCcHHHHHhhcC---CcCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEEECccccc
Confidence            99999999999998886543   488999999999999999999988   999999999999999999999999999876


Q ss_pred             cCCCCCC-cccccccccccccccccCcc--cCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCC
Q 042435          274 LDVDSSN-RTLQAGTYGYIALELVYTMV--VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP  350 (412)
Q Consensus       274 ~~~~~~~-~~~~~gt~~y~aPE~~~~~~--~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (412)
                      ....... .....|+..|+|||...+..  .+.++||||||+++|||++|..||......    .............. +
T Consensus       155 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~----~~~~~~~~~~~~~~-~  229 (288)
T cd05583         155 FLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQ----NSQSEISRRILKSK-P  229 (288)
T ss_pred             cccccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCccc----chHHHHHHHHHccC-C
Confidence            5433221 22345889999999987655  788999999999999999999998622100    00011111111111 1


Q ss_pred             ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       351 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      +.+..   ....+.+++.+||+.||++|||+.++.+.|+..
T Consensus       230 ~~~~~---~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~  267 (288)
T cd05583         230 PFPKT---MSAEARDFIQKLLEKDPKKRLGANGADEIKNHP  267 (288)
T ss_pred             CCCcc---cCHHHHHHHHHHhcCCHhhccCcchHHHHhcCc
Confidence            11111   122378899999999999999998888777664

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=3e-34  Score=259.36  Aligned_cols=228  Identities=24%  Similarity=0.307  Sum_probs=180.3

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEeccCCccccc------------------------eEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHHSETEDS------------------------AFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~~~~~~~------------------------~~~~~~~~~~~lv  196 (412)
                      .++|+..++||+|.||+|-.++- .+++.+|+|.++..-+...                        ...+++.+.+|.|
T Consensus       167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFV  246 (516)
T KOG0690|consen  167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFV  246 (516)
T ss_pred             cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEE
Confidence            46788899999999999999966 4799999998865433322                        2236778899999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||..||.|+-+|...+   .++.....-+-..|+.||.|||++   +||.||||.+|.|+|.++.+||+|||+++.--.
T Consensus       247 MeyanGGeLf~HLsrer---~FsE~RtRFYGaEIvsAL~YLHs~---~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~  320 (516)
T KOG0690|consen  247 MEYANGGELFFHLSRER---VFSEDRTRFYGAEIVSALGYLHSR---NIVYRDLKLENLLLDKDGHIKITDFGLCKEEIK  320 (516)
T ss_pred             EEEccCceEeeehhhhh---cccchhhhhhhHHHHHHhhhhhhC---CeeeeechhhhheeccCCceEeeecccchhccc
Confidence            99999999999887654   477777778899999999999998   999999999999999999999999999986544


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      ........+||+.|+|||++....|+.+.|.|.+||++|||++|+.||...       ..+..+.-++-..+..|.  ..
T Consensus       321 ~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~-------dh~kLFeLIl~ed~kFPr--~l  391 (516)
T KOG0690|consen  321 YGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNK-------DHEKLFELILMEDLKFPR--TL  391 (516)
T ss_pred             ccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCccccc-------chhHHHHHHHhhhccCCc--cC
Confidence            445567789999999999999999999999999999999999999999732       122222223333333332  11


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                      ..   ....|+...+.+||.+|.     .+.||.++
T Consensus       392 s~---eAktLLsGLL~kdP~kRLGgGpdDakEi~~h  424 (516)
T KOG0690|consen  392 SP---EAKTLLSGLLKKDPKKRLGGGPDDAKEIMRH  424 (516)
T ss_pred             CH---HHHHHHHHHhhcChHhhcCCCchhHHHHHhh
Confidence            22   256677889999999995     45566543

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=3e-34  Score=271.28  Aligned_cols=232  Identities=22%  Similarity=0.242  Sum_probs=169.9

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEEe
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +|+..+.||+|+||.||++.. .+++.+|+|.+.                       |+++......+..+...+++|||
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~   84 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMEL   84 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEec
Confidence            455667899999999999976 468999999753                       45555555667777888999999


Q ss_pred             ccCCceeeeec---cCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          200 MERGSLFCVLR---DDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       200 ~~~gsL~~~l~---~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      +.. ++.++..   .. ....+++.....++.+++.||+|||+.+  +++||||||+||+++.++.++|+|||+++....
T Consensus        85 ~~~-~l~~l~~~~~~~-~~~~l~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  160 (288)
T cd06616          85 MDI-SLDKFYKYVYEV-LKSVIPEEILGKIAVATVKALNYLKEEL--KIIHRDVKPSNILLDRNGNIKLCDFGISGQLVD  160 (288)
T ss_pred             ccC-CHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHhhcC--CeeccCCCHHHEEEccCCcEEEeecchhHHhcc
Confidence            864 5544322   11 1135899999999999999999999742  899999999999999999999999999876543


Q ss_pred             CCCCcccccccccccccccccCc---ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccc
Q 042435          277 DSSNRTLQAGTYGYIALELVYTM---VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN  353 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~---~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (412)
                      .. ......|+..|+|||++.+.   .++.++|||||||++|||++|+.||.....      ......+..... .+...
T Consensus       161 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~------~~~~~~~~~~~~-~~~~~  232 (288)
T cd06616         161 SI-AKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNS------VFDQLTQVVKGD-PPILS  232 (288)
T ss_pred             CC-ccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcch------HHHHHhhhcCCC-CCcCC
Confidence            22 12233688899999998765   688999999999999999999999863210      000111111110 01100


Q ss_pred             -hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          354 -QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       354 -~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                       .........+.+++.+||+.||++|||++||+++
T Consensus       233 ~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~  267 (288)
T cd06616         233 NSEEREFSPSFVNFINLCLIKDESKRPKYKELLEH  267 (288)
T ss_pred             CcCCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence             1101123348899999999999999999999876

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=8.2e-34  Score=266.95  Aligned_cols=223  Identities=22%  Similarity=0.269  Sum_probs=168.7

Q ss_pred             eeecCceEEEEEEe-CCCcEEEEEecc------------------------CCccccceEEEecCceEEEEEEeccCCce
Q 042435          151 IGTGGYDSVYKAEL-PDGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIYEYMERGSL  205 (412)
Q Consensus       151 lG~G~~g~Vy~~~~-~~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~ey~~~gsL  205 (412)
                      ||+|+||+||++.. .+|+.+|+|.+.                        |+++......+...+..++||||+++++|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            68999999999965 468999999653                        44444455556777889999999999999


Q ss_pred             eeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCccccc
Q 042435          206 FCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA  285 (412)
Q Consensus       206 ~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~  285 (412)
                      .+++..... ..+++..+..++.|++.||.|||+.   +++||||+|+||++++++.++|+|||++...... .......
T Consensus        81 ~~~l~~~~~-~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~-~~~~~~~  155 (277)
T cd05577          81 KYHIYNVGE-PGFPEARAIFYAAQIICGLEHLHQR---RIVYRDLKPENVLLDDHGNVRISDLGLAVELKGG-KKIKGRA  155 (277)
T ss_pred             HHHHHHcCc-CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEccCcchhhhccC-Ccccccc
Confidence            988865432 2589999999999999999999998   9999999999999999999999999998765432 2223346


Q ss_pred             ccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHH
Q 042435          286 GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVST  365 (412)
Q Consensus       286 gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (412)
                      ++..|+|||++.+..++.++||||||+++|+|++|+.||......    .....+...... .....+..   ....+.+
T Consensus       156 ~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~----~~~~~~~~~~~~-~~~~~~~~---~~~~~~~  227 (277)
T cd05577         156 GTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEK----VEKEELKRRTLE-MAVEYPDK---FSPEAKD  227 (277)
T ss_pred             CCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCccc----ccHHHHHhcccc-ccccCCcc---CCHHHHH
Confidence            788999999998888999999999999999999999998632110    000001110000 01111111   1234788


Q ss_pred             HHHhcCcCCCCCCC-----CHHHHHH
Q 042435          366 IALACLRSKPKSRP-----TMQRISQ  386 (412)
Q Consensus       366 l~~~Cl~~dP~~RP-----s~~evl~  386 (412)
                      ++.+||+.||++||     ++.++++
T Consensus       228 li~~~l~~~p~~R~~~~~~~~~~ll~  253 (277)
T cd05577         228 LCEALLQKDPEKRLGCRGGSADEVRE  253 (277)
T ss_pred             HHHHHccCChhHccCCCcccHHHHHh
Confidence            99999999999999     6666765

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=1.1e-33  Score=263.59  Aligned_cols=221  Identities=24%  Similarity=0.322  Sum_probs=172.3

Q ss_pred             eeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEEEEeccCCce
Q 042435          151 IGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIYEYMERGSL  205 (412)
Q Consensus       151 lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~gsL  205 (412)
                      ||.|+||.||+|... +++.+|+|.+                        +|+++......+..+...++++||+++++|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            689999999999875 4899999965                        345555555567778889999999999999


Q ss_pred             eeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCccccc
Q 042435          206 FCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA  285 (412)
Q Consensus       206 ~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~  285 (412)
                      .+++....   .+++..+..++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||+++...... ......
T Consensus        81 ~~~l~~~~---~l~~~~~~~~~~~i~~~l~~lH~~---~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~-~~~~~~  153 (262)
T cd05572          81 WTILRDRG---LFDEYTARFYIACVVLAFEYLHNR---GIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ-KTWTFC  153 (262)
T ss_pred             HHHHhhcC---CCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEEcCCCCEEEeeCCcccccCccc-cccccc
Confidence            99987653   488999999999999999999998   99999999999999999999999999998764432 223346


Q ss_pred             ccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHH
Q 042435          286 GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVST  365 (412)
Q Consensus       286 gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (412)
                      ++..|+|||.+.+..++.++|+||||+++|||++|..||.....     ........+.........+...   ...+.+
T Consensus       154 ~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  225 (262)
T cd05572         154 GTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDE-----DPMEIYNDILKGNGKLEFPNYI---DKAAKD  225 (262)
T ss_pred             CCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCC-----CHHHHHHHHhccCCCCCCCccc---CHHHHH
Confidence            78899999999888899999999999999999999999873210     0111112222111111111111   234889


Q ss_pred             HHHhcCcCCCCCCCC-----HHHHHH
Q 042435          366 IALACLRSKPKSRPT-----MQRISQ  386 (412)
Q Consensus       366 l~~~Cl~~dP~~RPs-----~~evl~  386 (412)
                      ++.+||+.+|++||+     ++|+++
T Consensus       226 ~i~~~l~~~p~~R~~~~~~~~~~l~~  251 (262)
T cd05572         226 LIKQLLRRNPEERLGNLKGGIKDIKK  251 (262)
T ss_pred             HHHHHccCChhhCcCCcccCHHHHhc
Confidence            999999999999999     777765

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=2.7e-33  Score=268.78  Aligned_cols=230  Identities=23%  Similarity=0.300  Sum_probs=175.1

Q ss_pred             cccceeeeecCceEEEEEEe-CCCcEEEEEecc------------------------CCccccceEEEecCceEEEEEEe
Q 042435          145 FHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      |+..+.||+|+||.||+|.. .+++.||+|.+.                        |+++......+..++..++||||
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  106 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEY  106 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeC
Confidence            66778999999999999976 468999999764                        34444445556777889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      ++ |+|.+.+....  ..++|.++..++.|++.||.|||+.   +++||||+|+||+++.++.++|+|||++......  
T Consensus       107 ~~-g~l~~~~~~~~--~~l~~~~~~~i~~~i~~~l~~lH~~---~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~--  178 (317)
T cd06635         107 CL-GSASDLLEVHK--KPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASIASPA--  178 (317)
T ss_pred             CC-CCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcccEEECCCCCEEEecCCCccccCCc--
Confidence            96 57777664332  2589999999999999999999998   9999999999999999999999999998754322  


Q ss_pred             Cccccccccccccccccc---CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          280 NRTLQAGTYGYIALELVY---TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~---~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                        ....|+..|+|||++.   ...++.++|||||||++|||++|+.||...       ........+...........  
T Consensus       179 --~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~-------~~~~~~~~~~~~~~~~~~~~--  247 (317)
T cd06635         179 --NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM-------NAMSALYHIAQNESPTLQSN--  247 (317)
T ss_pred             --ccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCc-------cHHHHHHHHHhccCCCCCCc--
Confidence              2346788999999974   456889999999999999999999997632       11111112222211111111  


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                       .....+.+++.+||+.+|.+||++.++++++-.....
T Consensus       248 -~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~  284 (317)
T cd06635         248 -EWSDYFRNFVDSCLQKIPQDRPTSEELLKHMFVLRER  284 (317)
T ss_pred             -cccHHHHHHHHHHccCCcccCcCHHHHHhChhhhccC
Confidence             1223478899999999999999999999987655443

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=1.8e-33  Score=260.25  Aligned_cols=229  Identities=27%  Similarity=0.346  Sum_probs=179.3

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEecC--ceEEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVYSP--QCMFFIY  197 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~--~~~~lv~  197 (412)
                      +|+..+.||+|++|.||+|... +++.|++|.++                       |+++......+...  ...++++
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence            4778899999999999999875 68999999753                       34444444455556  7899999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++++|.+++....   .+++..+..++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||.+......
T Consensus        81 e~~~~~~L~~~~~~~~---~~~~~~~~~~~~~l~~~l~~lh~~---~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~  154 (260)
T cd06606          81 EYVSGGSLSSLLKKFG---KLPEPVIRKYTRQILEGLAYLHSN---GIVHRDIKGANILVDSDGVVKLADFGCAKRLGDI  154 (260)
T ss_pred             EecCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEcccccEEecccc
Confidence            9999999999987654   589999999999999999999998   9999999999999999999999999998876544


Q ss_pred             CC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          278 SS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       278 ~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ..  ......++..|+|||...+...+.++||||||+++++|++|..||....      ..................+..
T Consensus       155 ~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~  228 (260)
T cd06606         155 ETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELG------NPMAALYKIGSSGEPPEIPEH  228 (260)
T ss_pred             cccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------chHHHHHhccccCCCcCCCcc
Confidence            32  1334568889999999988889999999999999999999999987321      000111111111111111111


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .   ...+.+++.+|++.||++||++.|++++
T Consensus       229 ~---~~~l~~~i~~~l~~~p~~Rp~~~~ll~~  257 (260)
T cd06606         229 L---SEEAKDFLRKCLRRDPKKRPTADELLQH  257 (260)
T ss_pred             c---CHHHHHHHHHhCcCChhhCCCHHHHhhC
Confidence            1   2348889999999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.2e-33  Score=259.55  Aligned_cols=227  Identities=26%  Similarity=0.408  Sum_probs=178.1

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEEe
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +|++.+.||+|++|.||++... +++.||+|.+.                       |+++......+...+..+++|||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY   80 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEec
Confidence            4778899999999999999764 68899999764                       33334444456677889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++++|.+++....   .+++..+..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++........
T Consensus        81 ~~~~~L~~~~~~~~---~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~  154 (254)
T cd06627          81 AENGSLRQIIKKFG---PFPESLVAVYVYQVLQGLAYLHEQ---GVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSK  154 (254)
T ss_pred             CCCCcHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEECCCCCEEEeccccceecCCCcc
Confidence            99999998887553   589999999999999999999998   999999999999999999999999999987655443


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      ......++..|+|||...+..++.++||||+|+++|+|++|+.||....       .......... ...+..+...   
T Consensus       155 ~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~-------~~~~~~~~~~-~~~~~~~~~~---  223 (254)
T cd06627         155 DDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLN-------PMAALFRIVQ-DDHPPLPEGI---  223 (254)
T ss_pred             cccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCcc-------HHHHHHHHhc-cCCCCCCCCC---
Confidence            3344568899999999988778999999999999999999999986321       1111111111 1111111111   


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+.+++.+||..+|++|||+.|++.+
T Consensus       224 ~~~~~~~i~~~l~~~p~~R~~~~~~l~~  251 (254)
T cd06627         224 SPELKDFLMQCFQKDPNLRPTAKQLLKH  251 (254)
T ss_pred             CHHHHHHHHHHHhCChhhCcCHHHHhcC
Confidence            2347789999999999999999999853

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=1e-33  Score=273.99  Aligned_cols=244  Identities=23%  Similarity=0.285  Sum_probs=173.7

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc----------------------CCccccceEEEec-----Cce
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH----------------------HSETEDSAFVVYS-----PQC  192 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~----------------------~~~~~~~~~~~~~-----~~~  192 (412)
                      .+++|++.+.||+|+||.||+|.. .+|+.||+|.++                      |+++......+..     ...
T Consensus         3 ~~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   82 (336)
T cd07849           3 VGPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFND   82 (336)
T ss_pred             cccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccce
Confidence            357899999999999999999975 568999999764                      3333333333222     245


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .++++||+++ +|.+++...    .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++
T Consensus        83 ~~lv~e~~~~-~l~~~~~~~----~l~~~~~~~i~~ql~~aL~~LH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~  154 (336)
T cd07849          83 VYIVQELMET-DLYKLIKTQ----HLSNDHIQYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTNCDLKICDFGLAR  154 (336)
T ss_pred             EEEEehhccc-CHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEECccccee
Confidence            7999999964 777766543    489999999999999999999998   99999999999999999999999999987


Q ss_pred             ccCCCCCC---cccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccc------c--CCCCcchh
Q 042435          273 LLDVDSSN---RTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS------S--SSGPKIML  340 (412)
Q Consensus       273 ~~~~~~~~---~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~------~--~~~~~~~~  340 (412)
                      ........   .....|+..|+|||.+.+ ..++.++|||||||++|||++|+.||.......      .  ........
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~  234 (336)
T cd07849         155 IADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDL  234 (336)
T ss_pred             eccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHH
Confidence            65432211   123467899999998654 568899999999999999999999985321000      0  00000001


Q ss_pred             hHHhhh-------ccC--Cccc--hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH--HhcCC
Q 042435          341 IDILYQ-------RLS--PPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE--LEGKT  392 (412)
Q Consensus       341 ~~~~~~-------~~~--~~~~--~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~--L~~~~  392 (412)
                      ..+...       ...  ....  .........+.+++.+||+.||++|||+.|++++  ++...
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~  299 (336)
T cd07849         235 NCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYH  299 (336)
T ss_pred             HHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccC
Confidence            100000       000  0000  0001123347899999999999999999999988  55443

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=9.5e-35  Score=284.60  Aligned_cols=227  Identities=24%  Similarity=0.346  Sum_probs=182.5

Q ss_pred             ccceeeeecCceEEEEEEeC--CCc--EEEEEec----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          146 HIRYCIGTGGYDSVYKAELP--DGK--VVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       146 ~~~~~lG~G~~g~Vy~~~~~--~~~--~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ...++||+|.||.|++|.|.  +|+  .||||.+                      +|++..+.++++.+ ....+|+|.
T Consensus       113 ~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~EL  191 (1039)
T KOG0199|consen  113 KLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFEL  191 (1039)
T ss_pred             HHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhhh
Confidence            44578999999999999884  344  5899954                      57777788888776 778999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      ++.|+|.+.|+.. ....+-......++.|||.|+.||.++   ++|||||..+|+|+-..-.+||+|||+.+.+..+..
T Consensus       192 aplGSLldrLrka-~~~~llv~~Lcdya~QiA~aM~YLesk---rlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned  267 (1039)
T KOG0199|consen  192 APLGSLLDRLRKA-KKAILLVSRLCDYAMQIAKAMQYLESK---RLVHRDLAARNLLLASPRTVKICDFGLMRALGENED  267 (1039)
T ss_pred             cccchHHHHHhhc-cccceeHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhhheecccceeeeecccceeccCCCCc
Confidence            9999999999883 233577888899999999999999999   999999999999999999999999999998866544


Q ss_pred             Ccc---cccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          280 NRT---LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       280 ~~~---~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ...   ...-.+.|.|||.+....++.+||||+|||++|||+| |..||-..        ....+.+.++....-+.+..
T Consensus       268 ~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~--------~g~qIL~~iD~~erLpRPk~  339 (1039)
T KOG0199|consen  268 MYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGC--------RGIQILKNIDAGERLPRPKY  339 (1039)
T ss_pred             ceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCC--------CHHHHHHhccccccCCCCCC
Confidence            331   2234578999999999999999999999999999999 78887522        12223444444433333444


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      +.+   .+++++..||..+|++|||+..|.+.+
T Consensus       340 cse---dIY~imk~cWah~paDRptFsair~~~  369 (1039)
T KOG0199|consen  340 CSE---DIYQIMKNCWAHNPADRPTFSAIREDL  369 (1039)
T ss_pred             ChH---HHHHHHHHhccCCccccccHHHHHHhH
Confidence            444   489999999999999999999997444

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.6e-33  Score=261.62  Aligned_cols=228  Identities=21%  Similarity=0.259  Sum_probs=173.2

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEecc--------------------------CCccccceEEEec--CceE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH--------------------------HSETEDSAFVVYS--PQCM  193 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~--------------------------~~~~~~~~~~~~~--~~~~  193 (412)
                      .+|++.+.||+|+||.||+|.. .+++.||+|.+.                          |+++......+..  ....
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            4789999999999999999976 468999999652                          3333333333333  3467


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ++++||+++++|.+++....   .+++.....++.|++.||.|||+.   +++|+||||+||+++.++.++|+|||+++.
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~---~l~~~~~~~~~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~  155 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYG---ALTENVTRRYTRQILQGVSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKR  155 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECccccccc
Confidence            89999999999998886543   478889999999999999999998   999999999999999999999999999986


Q ss_pred             cCCCC---CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCC
Q 042435          274 LDVDS---SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP  350 (412)
Q Consensus       274 ~~~~~---~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (412)
                      .....   .......++..|+|||.+.+..++.++|+|||||++||+++|+.||...       .......+.......+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-------~~~~~~~~~~~~~~~~  228 (264)
T cd06653         156 IQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEY-------EAMAAIFKIATQPTKP  228 (264)
T ss_pred             cccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCcc-------CHHHHHHHHHcCCCCC
Confidence            53211   1112346889999999998888999999999999999999999998632       1111122222111112


Q ss_pred             ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       351 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..+..   ....+.+++.+||. +|..||+..+++++
T Consensus       229 ~~p~~---~~~~~~~~i~~~l~-~~~~r~~~~~~~~~  261 (264)
T cd06653         229 MLPDG---VSDACRDFLKQIFV-EEKRRPTAEFLLRH  261 (264)
T ss_pred             CCCcc---cCHHHHHHHHHHhc-CcccCccHHHHhcC
Confidence            11222   22347889999999 57999999998764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=1.1e-33  Score=273.86  Aligned_cols=239  Identities=26%  Similarity=0.328  Sum_probs=174.2

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEec--CceE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYS--PQCM  193 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~--~~~~  193 (412)
                      ..++|++.+.||+|+||.||+|... +++.+|+|++                        +|+++......+..  ....
T Consensus         5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~   84 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDI   84 (337)
T ss_pred             hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceE
Confidence            3567888999999999999999775 6889999965                        45555555555443  3468


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ++||||++ ++|.+++...    .++|..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.
T Consensus        85 ~lv~e~~~-~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH~~---~i~H~dl~p~nill~~~~~~kl~d~g~~~~  156 (337)
T cd07852          85 YLVFEYME-TDLHAVIRAN----ILEDVHKRYIMYQLLKALKYIHSG---NVIHRDLKPSNILLNSDCRVKLADFGLARS  156 (337)
T ss_pred             EEEecccc-cCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccchhc
Confidence            99999997 5888877654    488999999999999999999998   999999999999999999999999999986


Q ss_pred             cCCCCC-----CcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcch
Q 042435          274 LDVDSS-----NRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKIM  339 (412)
Q Consensus       274 ~~~~~~-----~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~~  339 (412)
                      ......     ......|+..|+|||.+.+ ..++.++||||||+++|||+||+.||........        .......
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~  236 (337)
T cd07852         157 LSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAED  236 (337)
T ss_pred             cccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHH
Confidence            543321     1233468899999998764 4578899999999999999999999853211000        0000000


Q ss_pred             h--------hHHhhh---ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          340 L--------IDILYQ---RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       340 ~--------~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .        .+.+..   ....+...........+.+++.+||+.||++|||+.+++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~  295 (337)
T cd07852         237 IESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEH  295 (337)
T ss_pred             HHHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhC
Confidence            0        000000   00000000000112347899999999999999999999986

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=1.7e-33  Score=267.07  Aligned_cols=240  Identities=21%  Similarity=0.241  Sum_probs=171.2

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ++|++.+.||+|++|.||+|... +|+.||+|.++                       |+++......+...+..++|||
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            57889999999999999999774 68999999653                       3444444555777889999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC-CCcEEEeecCCccccCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS-NLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~-~~~~kl~DfGla~~~~~~  277 (412)
                      |++ ++|.+++..... ..+++.....++.|++.||+|||++   +++||||+|+||+++. ++.+||+|||++......
T Consensus        82 ~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~  156 (294)
T PLN00009         82 YLD-LDLKKHMDSSPD-FAKNPRLIKTYLYQILRGIAYCHSH---RVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIP  156 (294)
T ss_pred             ccc-ccHHHHHHhCCC-CCcCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCcceEEEECCCCEEEEcccccccccCCC
Confidence            996 577776654332 2367888889999999999999998   9999999999999985 567999999999765433


Q ss_pred             CCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc-------CCCC-cc------hhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS-------SSGP-KI------MLID  342 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~-------~~~~-~~------~~~~  342 (412)
                      ........+++.|+|||++.+ ..++.++||||||+++|||+||+.||........       ...+ ..      ...+
T Consensus       157 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (294)
T PLN00009        157 VRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPD  236 (294)
T ss_pred             ccccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchh
Confidence            322334467889999998865 4578899999999999999999999863211000       0000 00      0000


Q ss_pred             Hhh--hccCCccc-hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          343 ILY--QRLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       343 ~~~--~~~~~~~~-~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...  +....... .........+.+++.+|++.+|++||++.+++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~~  284 (294)
T PLN00009        237 YKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALEH  284 (294)
T ss_pred             hhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            000  00000000 0001112347889999999999999999999864

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=1.7e-33  Score=260.79  Aligned_cols=228  Identities=25%  Similarity=0.288  Sum_probs=178.9

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEEe
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +|++.+.||+|+||.||++.. .+++.+|+|.+.                       |+++......+......++|+||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence            478889999999999999965 468899999754                       33344334445667889999999


Q ss_pred             ccCCceeeeeccCcc-cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          200 MERGSLFCVLRDDDE-AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      +++++|.+++..... ...+++..+..++.|++.||+|||+.   +++|+||+|+||++++++.+|++|||+++..... 
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~---~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~-  156 (256)
T cd08530          81 APFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQ---KILHRDLKSANILLVANDLVKIGDLGISKVLKKN-  156 (256)
T ss_pred             cCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEEecCCcEEEeeccchhhhccC-
Confidence            999999998865321 23589999999999999999999998   9999999999999999999999999999876544 


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                       ......++..|+|||...+..++.++|+||||+++|||++|+.||....        .............++...   .
T Consensus       157 -~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~---~  224 (256)
T cd08530         157 -MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARS--------MQDLRYKVQRGKYPPIPP---I  224 (256)
T ss_pred             -CcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--------HHHHHHHHhcCCCCCCch---h
Confidence             2223457889999999998889999999999999999999999986321        111112222222222211   2


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+.+++.+|++.+|++||++.|++++
T Consensus       225 ~~~~~~~li~~~l~~~p~~Rp~~~~~l~~  253 (256)
T cd08530         225 YSQDLQNFIRSMLQVKPKLRPNCDKILAS  253 (256)
T ss_pred             hCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence            23448899999999999999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=1.8e-33  Score=266.25  Aligned_cols=230  Identities=25%  Similarity=0.336  Sum_probs=172.1

Q ss_pred             CcccceeeeecCceEEEEEEe----CCCcEEEEEecc--------------------------CCccccceEEEecCceE
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL----PDGKVVALKKLH--------------------------HSETEDSAFVVYSPQCM  193 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~----~~~~~vAvK~l~--------------------------~~~~~~~~~~~~~~~~~  193 (412)
                      +|++.+.||+|+||.||++..    .+|+.||+|.++                          |+++......+..+...
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            478889999999999999976    368999999764                          23333344445667788


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ++||||+++++|.+++....   .+++.....++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++.
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~  154 (290)
T cd05613          81 HLILDYINGGELFTHLSQRE---RFKEQEVQIYSGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKE  154 (290)
T ss_pred             EEEEecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEECCCCCEEEeeCcccee
Confidence            99999999999999887543   478889999999999999999998   999999999999999999999999999986


Q ss_pred             cCCCCC-CcccccccccccccccccCc--ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCC
Q 042435          274 LDVDSS-NRTLQAGTYGYIALELVYTM--VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP  350 (412)
Q Consensus       274 ~~~~~~-~~~~~~gt~~y~aPE~~~~~--~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (412)
                      ...... ......|+..|+|||.+...  .++.++||||||+++|||++|+.||....    .......+.+...... +
T Consensus       155 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~----~~~~~~~~~~~~~~~~-~  229 (290)
T cd05613         155 FHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDG----EKNSQAEISRRILKSE-P  229 (290)
T ss_pred             cccccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCC----ccccHHHHHHHhhccC-C
Confidence            543221 12234688999999998753  46789999999999999999999986210    0000011111111111 1


Q ss_pred             ccchhhHHHHHHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          351 PINQKIIQDIILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       351 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                      +.+..   ....+.+++.+||+.||++||     ++++++++
T Consensus       230 ~~~~~---~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~~  268 (290)
T cd05613         230 PYPQE---MSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKH  268 (290)
T ss_pred             CCCcc---CCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHcC
Confidence            11111   123478899999999999997     67777665

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=100.00  E-value=8.1e-34  Score=290.55  Aligned_cols=244  Identities=20%  Similarity=0.206  Sum_probs=164.3

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-C----CcEEEEEeccCCcccc-----------------ce-E----E-EecCce
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-D----GKVVALKKLHHSETED-----------------SA-F----V-VYSPQC  192 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~----~~~vAvK~l~~~~~~~-----------------~~-~----~-~~~~~~  192 (412)
                      ..++|++.+.||+|+||.||+|.+. +    +..||+|++.......                 .. .    . ......
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNERVRRACPNSCADFVYGFLEPVSSKKEDE  209 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchhHHHHHHHHHhhchhhHHHHHHhhhcccccccCCc
Confidence            5678999999999999999999874 4    6899999875321110                 00 0    0 245667


Q ss_pred             EEEEEEeccCCceeeeeccCccc-----------------ccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCE
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEA-----------------IELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNI  255 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~-----------------~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NI  255 (412)
                      .++||||+++++|.+++......                 .......+..++.|++.||+|||++   +|+||||||+||
T Consensus       210 ~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~---gIiHRDLKP~NI  286 (566)
T PLN03225        210 YWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHST---GIVHRDVKPQNI  286 (566)
T ss_pred             eEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHC---CEEeCcCCHHHE
Confidence            89999999999999888653210                 0112234567999999999999998   999999999999


Q ss_pred             EecC-CCcEEEeecCCccccCCCC-CCcccccccccccccccccCc----------------------ccCcccccHHHH
Q 042435          256 LLNS-NLEAFVADFGTVRLLDVDS-SNRTLQAGTYGYIALELVYTM----------------------VVTEKCVIYSFG  311 (412)
Q Consensus       256 Ll~~-~~~~kl~DfGla~~~~~~~-~~~~~~~gt~~y~aPE~~~~~----------------------~~s~ksDv~S~G  311 (412)
                      |++. ++.+||+|||+++.+.... .......+++.|+|||.+...                      .++.++||||||
T Consensus       287 Ll~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlG  366 (566)
T PLN03225        287 IFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAG  366 (566)
T ss_pred             EEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccHHHH
Confidence            9985 5799999999998654332 222445789999999965322                      234567999999


Q ss_pred             HHHHHHHhCCCCcccccc-----cccCCCCcchhhHHhhhccCCccchhh---HHHHHHHHHHHHhcCcCCCCCCCCHHH
Q 042435          312 VVALEVLMGTHPGELLLS-----LSSSSGPKIMLIDILYQRLSPPINQKI---IQDIILVSTIALACLRSKPKSRPTMQR  383 (412)
Q Consensus       312 vil~elltg~~P~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~Cl~~dP~~RPs~~e  383 (412)
                      |++|||+++..|++....     +.........+.........+......   ........+|+.+|++.||++|||+.|
T Consensus       367 viL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e  446 (566)
T PLN03225        367 LIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGRQRISAKA  446 (566)
T ss_pred             HHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCCcccCCCHHH
Confidence            999999998877652110     000000000011111111000000000   000112458999999999999999999


Q ss_pred             HHHH
Q 042435          384 ISQE  387 (412)
Q Consensus       384 vl~~  387 (412)
                      ++++
T Consensus       447 ~L~H  450 (566)
T PLN03225        447 ALAH  450 (566)
T ss_pred             HhCC
Confidence            9986

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-34  Score=271.01  Aligned_cols=227  Identities=22%  Similarity=0.322  Sum_probs=189.7

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .-|++.+.||+|.|+.|-.|++ -+|+.||||.+                       +|+|+++.+.+..+...+|||+|
T Consensus        18 GLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLE   97 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILE   97 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEE
Confidence            3477778899999999999965 68999999965                       58999999999999999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec-CCCcEEEeecCCccccCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN-SNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~-~~~~~kl~DfGla~~~~~~  277 (412)
                      .=.+|+|++|+-.+.++  +......+++.||+.|+.|+|+.   .+|||||||+|+.+- .-|-+||.|||++-.+.+.
T Consensus        98 LGD~GDl~DyImKHe~G--l~E~La~kYF~QI~~AI~YCHqL---HVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG  172 (864)
T KOG4717|consen   98 LGDGGDLFDYIMKHEEG--LNEDLAKKYFAQIVHAISYCHQL---HVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPG  172 (864)
T ss_pred             ecCCchHHHHHHhhhcc--ccHHHHHHHHHHHHHHHHHHhhh---hhhcccCCcceeEEeeecCceEeeeccccccCCCc
Confidence            99999999999877653  88888999999999999999988   899999999998775 5688999999999776554


Q ss_pred             CCCcccccccccccccccccCcccC-cccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVT-EKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s-~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      . .....+|+..|-|||++.+..|+ ++.||||+|||||.|++|+.||+.       ....+.+..+++-...-|  ...
T Consensus       173 ~-kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqe-------ANDSETLTmImDCKYtvP--shv  242 (864)
T KOG4717|consen  173 K-KLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQE-------ANDSETLTMIMDCKYTVP--SHV  242 (864)
T ss_pred             c-hhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCcccc-------ccchhhhhhhhcccccCc--hhh
Confidence            3 34556899999999999999887 579999999999999999999983       233344455555544332  222


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                         .....+|+..|+..||++|.+.+||...
T Consensus       243 ---S~eCrdLI~sMLvRdPkkRAslEeI~s~  270 (864)
T KOG4717|consen  243 ---SKECRDLIQSMLVRDPKKRASLEEIVST  270 (864)
T ss_pred             ---hHHHHHHHHHHHhcCchhhccHHHHhcc
Confidence               2347899999999999999999999865

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-34  Score=266.53  Aligned_cols=225  Identities=24%  Similarity=0.348  Sum_probs=182.6

Q ss_pred             HHHHHhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEeccCCccccceEE-------------------------Eec
Q 042435          136 ENLIDATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHHSETEDSAFV-------------------------VYS  189 (412)
Q Consensus       136 ~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~~~~~~~~~~-------------------------~~~  189 (412)
                      .+...++ +|....+||+|+||.|..|..+ +.+.+|||.++..-+.+...+                         +++
T Consensus       343 ~d~i~~t-DFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQT  421 (683)
T KOG0696|consen  343 RDRIKAT-DFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQT  421 (683)
T ss_pred             ccceeec-ccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhh
Confidence            3344444 5888999999999999999664 578999999876544332221                         456


Q ss_pred             CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      -+.+|.||||+.+|+|--.+++-+   .+..+...-+|.+||-||-|||++   +|+.||||..||++|.++.+||+|||
T Consensus       422 mDRLyFVMEyvnGGDLMyhiQQ~G---kFKEp~AvFYAaEiaigLFFLh~k---gIiYRDLKLDNvmLd~eGHiKi~DFG  495 (683)
T KOG0696|consen  422 MDRLYFVMEYVNGGDLMYHIQQVG---KFKEPVAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFG  495 (683)
T ss_pred             hhheeeEEEEecCchhhhHHHHhc---ccCCchhhhhhHHHHHHhhhhhcC---CeeeeeccccceEeccCCceEeeecc
Confidence            678999999999999988777654   477788889999999999999999   99999999999999999999999999


Q ss_pred             CccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          270 TVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       270 la~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      +++.--.......+.+||+.|+|||++...+|+...|.|||||+||||+.|+.||+       ...+.+.+..+.+....
T Consensus       496 mcKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFd-------GeDE~elF~aI~ehnvs  568 (683)
T KOG0696|consen  496 MCKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFD-------GEDEDELFQAIMEHNVS  568 (683)
T ss_pred             cccccccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCC-------CCCHHHHHHHHHHccCc
Confidence            99865555555667899999999999999999999999999999999999999998       33455556666666655


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCC
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRP  379 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP  379 (412)
                      .+.  ....   +..++....+.+.|.+|.
T Consensus       569 yPK--slSk---EAv~ickg~ltK~P~kRL  593 (683)
T KOG0696|consen  569 YPK--SLSK---EAVAICKGLLTKHPGKRL  593 (683)
T ss_pred             Ccc--cccH---HHHHHHHHHhhcCCcccc
Confidence            432  2222   256777888899999995

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=1.1e-33  Score=263.16  Aligned_cols=223  Identities=23%  Similarity=0.349  Sum_probs=171.6

Q ss_pred             eeecCceEEEEEEeC-CCcEEEEEecc------------------------CCccccceEEEecCceEEEEEEeccCCce
Q 042435          151 IGTGGYDSVYKAELP-DGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIYEYMERGSL  205 (412)
Q Consensus       151 lG~G~~g~Vy~~~~~-~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~ey~~~gsL  205 (412)
                      ||+|+||.||++... +|+.+|+|.+.                        |+++......+......++++||+++++|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            689999999999886 49999999764                        34444444446677889999999999999


Q ss_pred             eeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC------
Q 042435          206 FCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS------  279 (412)
Q Consensus       206 ~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~------  279 (412)
                      .+++....   .+++..+..++.|++.||+|||+.   +++|+||+|+||++++++.++|+|||++........      
T Consensus        81 ~~~l~~~~---~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~  154 (265)
T cd05579          81 ASLLENVG---SLDEDVARIYIAEIVLALEYLHSN---GIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDD  154 (265)
T ss_pred             HHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHc---CeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccc
Confidence            99887644   589999999999999999999998   999999999999999999999999999875433211      


Q ss_pred             --CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          280 --NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       280 --~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                        ......++..|+|||.......+.++||||||+++||+++|+.||...       ................+.  .. 
T Consensus       155 ~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~-------~~~~~~~~~~~~~~~~~~--~~-  224 (265)
T cd05579         155 EKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGE-------TPEEIFQNILNGKIEWPE--DV-  224 (265)
T ss_pred             cccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCC-------CHHHHHHHHhcCCcCCCc--cc-
Confidence              223346788999999998888999999999999999999999998632       111111112211111111  11 


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                      .....+.+++.+||+.+|++|||+.++.+.|+
T Consensus       225 ~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~  256 (265)
T cd05579         225 EVSDEAIDLISKLLVPDPEKRLGAKSIEEIKN  256 (265)
T ss_pred             cCCHHHHHHHHHHhcCCHhhcCCCccHHHHhc
Confidence            01234789999999999999999966655554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=5.2e-33  Score=261.89  Aligned_cols=237  Identities=23%  Similarity=0.317  Sum_probs=172.1

Q ss_pred             cccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEEec
Q 042435          145 FHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      |++.+.||+|+||+||+|... +++.||+|++.                       |+++......+..++..++||||+
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            567889999999999999875 58899999763                       333444444466678899999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                       +|+|.+++..... ..+++.++..++.|++.+|.|||++   +++|+||+|+||++++++.++|+|||+++....... 
T Consensus        81 -~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~-  154 (283)
T cd07830          81 -EGNLYQLMKDRKG-KPFSESVIRSIIYQILQGLAHIHKH---GFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPP-  154 (283)
T ss_pred             -CCCHHHHHHhccc-ccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCCEEEeecccceeccCCCC-
Confidence             7899888765432 2589999999999999999999998   999999999999999999999999999986543222 


Q ss_pred             ccccccccccccccccc-CcccCcccccHHHHHHHHHHHhCCCCcccccccc---------cCCCCc----c-hhhHHhh
Q 042435          281 RTLQAGTYGYIALELVY-TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS---------SSSGPK----I-MLIDILY  345 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~-~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~---------~~~~~~----~-~~~~~~~  345 (412)
                      .....++..|+|||++. ...++.++|+||||++++||++|+.||.......         ......    . .......
T Consensus       155 ~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (283)
T cd07830         155 YTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLG  234 (283)
T ss_pred             cCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhcccc
Confidence            22345788999999875 4457899999999999999999999985321100         000000    0 0000000


Q ss_pred             hccCCc----cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 QRLSPP----INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ~~~~~~----~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ......    ...........+.+++.+||+.||++|||++|++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~  280 (283)
T cd07830         235 FRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQH  280 (283)
T ss_pred             ccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhhC
Confidence            000000    000000112348899999999999999999999864

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=7.5e-35  Score=282.38  Aligned_cols=233  Identities=24%  Similarity=0.330  Sum_probs=182.1

Q ss_pred             hhcCcccceeeeecCceEEEEEEeCCCc-EEEEEec---------------------cCCccccceEEEecCceEEEEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~-~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ..+.|++...||.|+||.||||..++.. ..|.|.+                     +|+.++.....++..+.+++..|
T Consensus        30 P~d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliE  109 (1187)
T KOG0579|consen   30 PRDHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIE  109 (1187)
T ss_pred             HHHHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEe
Confidence            3445777788999999999999876533 3444543                     56666666666778889999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      ||.||-...++-+-.  ..|+..++..+++|++.||.|||++   +|+|||||..|||++-+|.++|+|||.+.......
T Consensus       110 FC~GGAVDaimlEL~--r~LtE~QIqvvc~q~ldALn~LHs~---~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t~  184 (1187)
T KOG0579|consen  110 FCGGGAVDAIMLELG--RVLTEDQIQVVCYQVLDALNWLHSQ---NIIHRDLKAGNILLTLDGDIRLADFGVSAKNKSTR  184 (1187)
T ss_pred             ecCCchHhHHHHHhc--cccchHHHHHHHHHHHHHHHHHhhc---chhhhhccccceEEEecCcEeeecccccccchhHH
Confidence            999999988776544  3589999999999999999999999   99999999999999999999999999986554444


Q ss_pred             CCccccccccccccccccc-----CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccc
Q 042435          279 SNRTLQAGTYGYIALELVY-----TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN  353 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~-----~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (412)
                      .....+.||++|||||+..     ..+|+.++||||||++|.||..+.+|-...       .+...+..+....  ||..
T Consensus       185 qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhel-------npMRVllKiaKSe--PPTL  255 (1187)
T KOG0579|consen  185 QKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHEL-------NPMRVLLKIAKSE--PPTL  255 (1187)
T ss_pred             hhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCcccc-------chHHHHHHHhhcC--CCcc
Confidence            5556789999999999875     467999999999999999999999995522       2222222222211  1111


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .........+.+++.+|+..||..||++.+++++
T Consensus       256 lqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~H  289 (1187)
T KOG0579|consen  256 LQPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLKH  289 (1187)
T ss_pred             cCcchhhhHHHHHHHHHHhcCCccCCCHHHHhhC
Confidence            2223344458899999999999999999999876

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=1.6e-33  Score=264.47  Aligned_cols=227  Identities=24%  Similarity=0.352  Sum_probs=177.7

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc-------------------------CCccccceEEEecCceEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-------------------------HSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-------------------------~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ++|.+.+.||+|+||.||+|... +++.||+|.+.                         |+++......+...+..++|
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            47889999999999999999774 79999999764                         33333334445667889999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++++|.+++....   .+++..+..++.|++.||+|||+.   +++|+||+|+||+++.++.++++|||++.....
T Consensus        81 ~e~~~~~~L~~~l~~~~---~l~~~~~~~i~~ql~~~l~~Lh~~---~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~  154 (280)
T cd05581          81 LEYAPNGELLQYIRKYG---SLDEKCTRFYAAEILLALEYLHSK---GIIHRDLKPENILLDKDMHIKITDFGTAKVLDP  154 (280)
T ss_pred             EcCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEecCCccccccCC
Confidence            99999999999987654   599999999999999999999998   999999999999999999999999999876543


Q ss_pred             CCC--------------------CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCC
Q 042435          277 DSS--------------------NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGP  336 (412)
Q Consensus       277 ~~~--------------------~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~  336 (412)
                      ...                    ......++..|+|||......++.++||||||++++|+++|+.||....       .
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~-------~  227 (280)
T cd05581         155 NSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSN-------E  227 (280)
T ss_pred             ccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCcc-------H
Confidence            221                    1123457889999999988889999999999999999999999987321       1


Q ss_pred             cchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCH----HHHHHH
Q 042435          337 KIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTM----QRISQE  387 (412)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~----~evl~~  387 (412)
                      ..............  +...   ...+.+++.+||+.+|++||++    +|++++
T Consensus       228 ~~~~~~~~~~~~~~--~~~~---~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~~  277 (280)
T cd05581         228 YLTFQKILKLEYSF--PPNF---PPDAKDLIEKLLVLDPQDRLGVNEGYDELKAH  277 (280)
T ss_pred             HHHHHHHHhcCCCC--CCcc---CHHHHHHHHHHhcCCHhhCCCcccCHHHHhcC
Confidence            11112222111111  1111   2237899999999999999999    887754

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.7e-34  Score=296.70  Aligned_cols=181  Identities=23%  Similarity=0.343  Sum_probs=132.2

Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                      .+||-||||+.-.|.++++.+...  -.-...++++.+|+.||+|+|+.   +||||||||.||++|++..+||+|||+|
T Consensus       670 ~LYIQMEyCE~~ll~~iI~~N~~~--~~~d~~wrLFreIlEGLaYIH~~---giIHRDLKP~NIFLd~~~~VKIGDFGLA  744 (1351)
T KOG1035|consen  670 ILYIQMEYCEKTLLRDIIRRNHFN--SQRDEAWRLFREILEGLAYIHDQ---GIIHRDLKPRNIFLDSRNSVKIGDFGLA  744 (1351)
T ss_pred             EEEEEHhhhhhhHHHHHHHhcccc--hhhHHHHHHHHHHHHHHHHHHhC---ceeeccCCcceeEEcCCCCeeecccccc
Confidence            468999999998888887765421  03456678999999999999999   9999999999999999999999999999


Q ss_pred             cccC------------------CCCCCcccccccccccccccccCc---ccCcccccHHHHHHHHHHHhCCCCccccccc
Q 042435          272 RLLD------------------VDSSNRTLQAGTYGYIALELVYTM---VVTEKCVIYSFGVVALEVLMGTHPGELLLSL  330 (412)
Q Consensus       272 ~~~~------------------~~~~~~~~~~gt~~y~aPE~~~~~---~~s~ksDv~S~Gvil~elltg~~P~~~~~~~  330 (412)
                      +...                  .+....+...||.-|+|||++.+.   .|+.|+|+||+||+++||+.-   |...   
T Consensus       745 t~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yP---F~Ts---  818 (1351)
T KOG1035|consen  745 TDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYP---FGTS---  818 (1351)
T ss_pred             hhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhcc---CCch---
Confidence            8721                  011234567899999999999764   499999999999999999853   4311   


Q ss_pred             ccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          331 SSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                         ......+...-+..++.+ ..........-.+++.++++.||.+|||+.|+++.
T Consensus       819 ---MERa~iL~~LR~g~iP~~-~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~s  871 (1351)
T KOG1035|consen  819 ---MERASILTNLRKGSIPEP-ADFFDPEHPEEASLIRWLLSHDPSKRPTATELLNS  871 (1351)
T ss_pred             ---HHHHHHHHhcccCCCCCC-cccccccchHHHHHHHHHhcCCCccCCCHHHHhhc
Confidence               000111112222222222 11122333345688999999999999999999864

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=3.7e-33  Score=266.25  Aligned_cols=240  Identities=19%  Similarity=0.272  Sum_probs=169.5

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEecC-------
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVYSP-------  190 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~-------  190 (412)
                      .++|++.+.||+|+||.||+|... +++.||||.+.                       |+++.....++...       
T Consensus        11 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   90 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRY   90 (310)
T ss_pred             hhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCC
Confidence            457999999999999999999764 68999999653                       44444444444333       


Q ss_pred             -ceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          191 -QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       191 -~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                       ...++||||+.+ +|.+++....  ..+++.+...++.|++.||+|||++   +++|+||||+||+++.++.+||+|||
T Consensus        91 ~~~~~lv~e~~~~-~l~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg  164 (310)
T cd07865          91 KGSFYLVFEFCEH-DLAGLLSNKN--VKFTLSEIKKVMKMLLNGLYYIHRN---KILHRDMKAANILITKDGILKLADFG  164 (310)
T ss_pred             CceEEEEEcCCCc-CHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEECCCCcEEECcCC
Confidence             345999999964 7877765442  2489999999999999999999998   99999999999999999999999999


Q ss_pred             CccccCCCCCC----cccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccc-------------
Q 042435          270 TVRLLDVDSSN----RTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLS-------------  331 (412)
Q Consensus       270 la~~~~~~~~~----~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~-------------  331 (412)
                      ++.........    .....++..|+|||.+.+. .++.++||||||+++|||+||+.||.......             
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~  244 (310)
T cd07865         165 LARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSIT  244 (310)
T ss_pred             CcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCC
Confidence            99765432211    1234577889999988664 47889999999999999999999986321100             


Q ss_pred             cCCCCcchhhHHhhh-ccCCccchhhHH------HHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          332 SSSGPKIMLIDILYQ-RLSPPINQKIIQ------DIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       332 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+.....+..+. ............      ....+.+++.+||..||++|||++|++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~h  307 (310)
T cd07865         245 PEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALNH  307 (310)
T ss_pred             hhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhcC
Confidence            000000000000000 000000000000      11236789999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-34  Score=255.84  Aligned_cols=228  Identities=20%  Similarity=0.300  Sum_probs=160.3

Q ss_pred             ccceeeeecCceEEEEEEeC-CCcEEEEEeccCCccc-c-------ceEEEecCceEEEE---------------EEecc
Q 042435          146 HIRYCIGTGGYDSVYKAELP-DGKVVALKKLHHSETE-D-------SAFVVYSPQCMFFI---------------YEYME  201 (412)
Q Consensus       146 ~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~~~~~-~-------~~~~~~~~~~~~lv---------------~ey~~  201 (412)
                      +....||.|+.|.|++++.+ +|...|||.++..... .       ...++...++.|+|               ||.|.
T Consensus        95 ~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs  174 (391)
T KOG0983|consen   95 ENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMS  174 (391)
T ss_pred             hhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHH
Confidence            34456999999999999774 5899999988643221 1       11123334455555               33331


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCc
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR  281 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~  281 (412)
                      - -+..+++...  .++++...-++...+.+||.||.+++  +|+|||+||+|||+|+.|++|+||||++..+.... ..
T Consensus       175 ~-C~ekLlkrik--~piPE~ilGk~tva~v~AL~YLKeKH--~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSk-Ah  248 (391)
T KOG0983|consen  175 T-CAEKLLKRIK--GPIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSK-AH  248 (391)
T ss_pred             H-HHHHHHHHhc--CCchHHhhhhhHHHHHHHHHHHHHhc--ceeecccCccceEEccCCCEEeecccccceeeccc-cc
Confidence            1 2222232221  13566666678888999999999876  99999999999999999999999999998765433 33


Q ss_pred             cccccccccccccccc---CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          282 TLQAGTYGYIALELVY---TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~---~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      +...|.+.|||||.+.   ...|+.++||||||+.++||.||+.||...      ..+-..+..+++ ..++.. .....
T Consensus       249 trsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c------~tdFe~ltkvln-~ePP~L-~~~~g  320 (391)
T KOG0983|consen  249 TRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGC------KTDFEVLTKVLN-EEPPLL-PGHMG  320 (391)
T ss_pred             ccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCC------CccHHHHHHHHh-cCCCCC-CcccC
Confidence            4557999999999986   346889999999999999999999998732      111122333333 222222 11112


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+.+++..|+.+|+.+||...+++++
T Consensus       321 FSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h  349 (391)
T KOG0983|consen  321 FSPDFQSFVKDCLTKDHRKRPKYNKLLEH  349 (391)
T ss_pred             cCHHHHHHHHHHhhcCcccCcchHHHhcC
Confidence            34458899999999999999999998875

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-33  Score=289.35  Aligned_cols=238  Identities=25%  Similarity=0.348  Sum_probs=188.3

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC--------CCcEEEEEec-----------------------cCCccccceEEEec
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP--------DGKVVALKKL-----------------------HHSETEDSAFVVYS  189 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~--------~~~~vAvK~l-----------------------~~~~~~~~~~~~~~  189 (412)
                      ..++..+.+.||+|.||.|++|...        ....||||.+                       +|+|+....+.|..
T Consensus       294 ~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~  373 (609)
T KOG0200|consen  294 PRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQ  373 (609)
T ss_pred             chhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeecc
Confidence            3344556679999999999999652        1457999976                       47788888888988


Q ss_pred             CceEEEEEEeccCCceeeeeccCc-------c----c--ccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEE
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDD-------E----A--IELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNIL  256 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~-------~----~--~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NIL  256 (412)
                      .+..++|+||++.|+|.++|+..+       .    .  ..++....+.++.|||.|++||++.   +++||||..+|||
T Consensus       374 ~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~---~~vHRDLAaRNVL  450 (609)
T KOG0200|consen  374 DGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASV---PCVHRDLAARNVL  450 (609)
T ss_pred             CCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhC---CccchhhhhhhEE
Confidence            999999999999999999998765       0    0  1388899999999999999999999   9999999999999


Q ss_pred             ecCCCcEEEeecCCccccCCCCCCc-ccccc--cccccccccccCcccCcccccHHHHHHHHHHHh-CCCCccccccccc
Q 042435          257 LNSNLEAFVADFGTVRLLDVDSSNR-TLQAG--TYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSS  332 (412)
Q Consensus       257 l~~~~~~kl~DfGla~~~~~~~~~~-~~~~g--t~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~  332 (412)
                      +..+..+||+|||+++......... ....|  ...|||||.+....|+.|+|||||||+|||++| |..||...     
T Consensus       451 i~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~-----  525 (609)
T KOG0200|consen  451 ITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGI-----  525 (609)
T ss_pred             ecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCC-----
Confidence            9999999999999999654433322 22222  456999999999999999999999999999999 88887631     


Q ss_pred             CCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          333 SSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                        .....+.+.+....+...+...   ...+.+++..||+.+|++||++.++.+.++..
T Consensus       526 --~~~~~l~~~l~~G~r~~~P~~c---~~eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~  579 (609)
T KOG0200|consen  526 --PPTEELLEFLKEGNRMEQPEHC---SDEIYDLMKSCWNADPEDRPTFSECVEFFEKH  579 (609)
T ss_pred             --CcHHHHHHHHhcCCCCCCCCCC---CHHHHHHHHHHhCCCcccCCCHHHHHHHHHHH
Confidence              1112223344443333323333   33488999999999999999999999999884

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-34  Score=256.44  Aligned_cols=238  Identities=23%  Similarity=0.296  Sum_probs=185.8

Q ss_pred             hhcCcccc-eeeeecCceEEEEEEe-CCCcEEEEEecc-----------------CCccccceEE----EecCceEEEEE
Q 042435          141 ATEYFHIR-YCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------HSETEDSAFV----VYSPQCMFFIY  197 (412)
Q Consensus       141 ~~~~f~~~-~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------~~~~~~~~~~----~~~~~~~~lv~  197 (412)
                      .|++|.+. ++||-|-.|.|-.+.. .+++.+|+|.+.                 |++++....+    +....++.+||
T Consensus        59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVm  138 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDSPKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVM  138 (400)
T ss_pred             chhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcCHHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeee
Confidence            35556654 5799999999999966 579999999874                 3444443333    33457889999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec---CCCcEEEeecCCcccc
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN---SNLEAFVADFGTVRLL  274 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~---~~~~~kl~DfGla~~~  274 (412)
                      |+|+||.|++.+++++.. .++..+.-.|+.||+.|+.|||+.   +|.||||||+|+|..   .|...||+|||+|+..
T Consensus       139 E~meGGeLfsriq~~g~~-afTErea~eI~~qI~~Av~~lH~~---nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t  214 (400)
T KOG0604|consen  139 ECMEGGELFSRIQDRGDQ-AFTEREASEIMKQIGLAVRYLHSM---NIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKET  214 (400)
T ss_pred             ecccchHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHHHHhc---chhhccCChhheeeecCCCCcceEeccccccccc
Confidence            999999999999877643 589999999999999999999999   999999999999995   4567999999999965


Q ss_pred             CCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          275 DVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       275 ~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      .. .....+.+-|+.|.|||++...+|+..+|+||+||++|-|++|.+||.......-   ....-..+.......+ .+
T Consensus       215 ~~-~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~ai---spgMk~rI~~gqy~FP-~p  289 (400)
T KOG0604|consen  215 QE-PGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI---SPGMKRRIRTGQYEFP-EP  289 (400)
T ss_pred             CC-CccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccC---ChhHHhHhhccCccCC-Ch
Confidence            43 2334556789999999999999999999999999999999999999984433211   1122222222222222 24


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ++.+......+++...+..+|.+|.|+.|++++
T Consensus       290 EWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~h  322 (400)
T KOG0604|consen  290 EWSCVSEAAKDLIRKLLKTEPTERLTIEEVMDH  322 (400)
T ss_pred             hHhHHHHHHHHHHHHHhcCCchhheeHHHhhcC
Confidence            455556678899999999999999999999876

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=4.7e-33  Score=271.20  Aligned_cols=237  Identities=23%  Similarity=0.240  Sum_probs=171.3

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEec------C
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVYS------P  190 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~------~  190 (412)
                      ..++|+..+.||+|+||.||+|.. .+++.||+|.+.                       |+++......+..      .
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            457899999999999999999976 478999999864                       3333333333322      2


Q ss_pred             ceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCC
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGT  270 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGl  270 (412)
                      ...++||||+. ++|.+.+..     .+++.....++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+
T Consensus        94 ~~~~lv~e~~~-~~l~~~~~~-----~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nil~~~~~~~kL~Dfg~  164 (353)
T cd07850          94 QDVYLVMELMD-ANLCQVIQM-----DLDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGL  164 (353)
T ss_pred             CcEEEEEeccC-CCHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCcc
Confidence            35799999996 477776643     278888999999999999999998   999999999999999999999999999


Q ss_pred             ccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccc-------cCCCCcchhhH-
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS-------SSSGPKIMLID-  342 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~-------~~~~~~~~~~~-  342 (412)
                      ++....... .....++..|+|||.+.+..++.++|||||||++|+|++|+.||.......       ....+.....+ 
T Consensus       165 ~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (353)
T cd07850         165 ARTAGTSFM-MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSR  243 (353)
T ss_pred             ceeCCCCCC-CCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHH
Confidence            986543322 223457889999999999899999999999999999999999986321100       00000000000 


Q ss_pred             -------Hhhhcc---------------CCccc-hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          343 -------ILYQRL---------------SPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       343 -------~~~~~~---------------~~~~~-~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                             ......               .+... .........+.+++.+||+.||++|||+.|++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~  311 (353)
T cd07850         244 LQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQH  311 (353)
T ss_pred             hhhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence                   000000               00000 0000123347899999999999999999999976

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=1.5e-33  Score=272.84  Aligned_cols=245  Identities=20%  Similarity=0.213  Sum_probs=175.4

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEeccC-----------------------CccccceEEEecC-----ce
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHH-----------------------SETEDSAFVVYSP-----QC  192 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~-----------------------~~~~~~~~~~~~~-----~~  192 (412)
                      .+.|.+.+.||+|+||.||+|.. .+++.||||.++.                       +++......+...     ..
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~   83 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND   83 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence            45789999999999999999976 4689999997643                       3333222222221     35


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .++|+||+. ++|.+++....   .+++.....++.|++.||.|||++   +++||||||+||+++.++.+||+|||+++
T Consensus        84 ~~lv~e~~~-~~L~~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~  156 (337)
T cd07858          84 VYIVYELMD-TDLHQIIRSSQ---TLSDDHCQYFLYQLLRGLKYIHSA---NVLHRDLKPSNLLLNANCDLKICDFGLAR  156 (337)
T ss_pred             EEEEEeCCC-CCHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECcCcccc
Confidence            799999996 68888776543   589999999999999999999998   99999999999999999999999999998


Q ss_pred             ccCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccc---------ccCCC-------
Q 042435          273 LLDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSL---------SSSSG-------  335 (412)
Q Consensus       273 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~---------~~~~~-------  335 (412)
                      .............++..|+|||.+.. ..++.++|||||||++|||++|+.||......         .....       
T Consensus       157 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (337)
T cd07858         157 TTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFI  236 (337)
T ss_pred             ccCCCcccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhc
Confidence            65443222234467889999998764 46889999999999999999999998632100         00000       


Q ss_pred             CcchhhHHhhhccC---CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH--HhcCCC
Q 042435          336 PKIMLIDILYQRLS---PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE--LEGKTP  393 (412)
Q Consensus       336 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~--L~~~~~  393 (412)
                      ..............   .............+.+++.+||+.||++|||++|++++  ++....
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~  299 (337)
T cd07858         237 RNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHD  299 (337)
T ss_pred             CchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhcC
Confidence            00000111110000   00000011123447899999999999999999999988  655443

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=7.9e-33  Score=264.81  Aligned_cols=179  Identities=24%  Similarity=0.370  Sum_probs=144.0

Q ss_pred             CcccceeeeecCceEEEEEEeC---CCcEEEEEeccC------------------------CccccceEEEecC--ceEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP---DGKVVALKKLHH------------------------SETEDSAFVVYSP--QCMF  194 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~---~~~~vAvK~l~~------------------------~~~~~~~~~~~~~--~~~~  194 (412)
                      .|++.+.||+|+||.||+|...   +++.||+|.+..                        +++......+...  +..+
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            4778899999999999999874   478999997643                        4444455556666  7899


Q ss_pred             EEEEeccCCceeeeeccCcc--cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC----CCcEEEeec
Q 042435          195 FIYEYMERGSLFCVLRDDDE--AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS----NLEAFVADF  268 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~--~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~----~~~~kl~Df  268 (412)
                      +||||+++ +|.+++.....  ...++......++.|++.||+|||+.   +++||||||+||+++.    ++.+||+||
T Consensus        81 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~h~dlkp~Nil~~~~~~~~~~~kl~Df  156 (316)
T cd07842          81 LLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSN---WVLHRDLKPANILVMGEGPERGVVKIGDL  156 (316)
T ss_pred             EEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEEcCCCCccceEEECCC
Confidence            99999975 66665543221  12578889999999999999999998   9999999999999999    999999999


Q ss_pred             CCccccCCCCC---CcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccc
Q 042435          269 GTVRLLDVDSS---NRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGEL  326 (412)
Q Consensus       269 Gla~~~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~  326 (412)
                      |+++.......   ......++..|+|||++.+ ..++.++||||||+++|||++|+.||..
T Consensus       157 g~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~  218 (316)
T cd07842         157 GLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKG  218 (316)
T ss_pred             ccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcC
Confidence            99986543322   1223467889999998765 4578999999999999999999999863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=5.5e-33  Score=261.84  Aligned_cols=237  Identities=25%  Similarity=0.342  Sum_probs=171.0

Q ss_pred             cccceeeeecCceEEEEEEeC-CCcEEEEEeccC-----------------------CccccceEEEecC--ceEEEEEE
Q 042435          145 FHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHH-----------------------SETEDSAFVVYSP--QCMFFIYE  198 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~-----------------------~~~~~~~~~~~~~--~~~~lv~e  198 (412)
                      |++.+.||+|+||.||+|... +++.+|+|.++.                       +++......+...  +..++|+|
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            567889999999999999875 588999998753                       3333334445555  78999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++ +|.+++....  ..+++..+..++.|++.||+|||+.   +++|+||||+||++++++.++|+|||++.......
T Consensus        81 ~~~~-~l~~~~~~~~--~~~~~~~~~~i~~~i~~al~~LH~~---~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~  154 (287)
T cd07840          81 YMDH-DLTGLLDSPE--VKFTESQIKCYMKQLLEGLQYLHSN---GILHRDIKGSNILINNDGVLKLADFGLARPYTKRN  154 (287)
T ss_pred             cccc-cHHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEEcCCCCEEEccccceeeccCCC
Confidence            9975 8888776542  2589999999999999999999998   99999999999999999999999999998664432


Q ss_pred             C-CcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccc---------cCCCCc--chhhHH-h
Q 042435          279 S-NRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS---------SSSGPK--IMLIDI-L  344 (412)
Q Consensus       279 ~-~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~---------~~~~~~--~~~~~~-~  344 (412)
                      . ......++..|+|||.+.+ ..++.++||||||+++|||+||+.||+......         ......  ....+. .
T Consensus       155 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (287)
T cd07840         155 SADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPW  234 (287)
T ss_pred             cccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccccccchh
Confidence            1 1233456788999998764 457899999999999999999999986321100         000000  000000 0


Q ss_pred             hhcc--CCccch---hhH-H-HHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          345 YQRL--SPPINQ---KII-Q-DIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       345 ~~~~--~~~~~~---~~~-~-~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....  ......   ... . ....+.+++.+||+.+|++||++++++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~  284 (287)
T cd07840         235 FENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQH  284 (287)
T ss_pred             hhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence            0000  000000   000 0 13457899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=4.5e-33  Score=262.00  Aligned_cols=237  Identities=21%  Similarity=0.262  Sum_probs=173.0

Q ss_pred             cccceeeeecCceEEEEEEeC-CCcEEEEEeccCC-----------------------ccccceEEEecCceEEEEEEec
Q 042435          145 FHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHHS-----------------------ETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~~-----------------------~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      |++.+.||+|++|.||+|... +++.+|+|.++..                       ++......+..++..++|+||+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            566789999999999999774 6899999976433                       2333333456678899999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++ +|.+++....  ..+++.++..++.|++.||+|||+.   +++|+||||+||+++.++.++|+|||.+.........
T Consensus        81 ~~-~l~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~  154 (283)
T cd05118          81 DT-DLYKLIKDRQ--RGLPESLIKSYLYQLLQGLAFCHSH---GILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRP  154 (283)
T ss_pred             CC-CHHHHHHhhc--ccCCHHHHHHHHHHHHHHHHHHHHC---CeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCccc
Confidence            75 8887776543  2589999999999999999999998   9999999999999999999999999999876544322


Q ss_pred             cccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccccc-------CCCC-cc---hhhH---Hh-
Q 042435          281 RTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS-------SSGP-KI---MLID---IL-  344 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~-------~~~~-~~---~~~~---~~-  344 (412)
                      .....++..|+|||.+.+. .++.++|+||||+++|+|+||+.||........       .... ..   ...+   .. 
T Consensus       155 ~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (283)
T cd05118         155 YTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYK  234 (283)
T ss_pred             ccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhh
Confidence            2334578899999998776 788999999999999999999999853211000       0000 00   0000   00 


Q ss_pred             --hhc-cCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          345 --YQR-LSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       345 --~~~-~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                        .+. ...............+.+++.+||+.||.+||++.+++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~~  280 (283)
T cd05118         235 FSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALAH  280 (283)
T ss_pred             hhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhhC
Confidence              000 0000001111223458899999999999999999999864

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=5.4e-33  Score=264.36  Aligned_cols=242  Identities=24%  Similarity=0.296  Sum_probs=170.5

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEeccC-----------------------CccccceEEEecC-----
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHH-----------------------SETEDSAFVVYSP-----  190 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~-----------------------~~~~~~~~~~~~~-----  190 (412)
                      ...++|++.+.||+|+||.||+|..+ +|+.||+|.++.                       +++......+.+.     
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            34578999999999999999999875 589999997743                       3333333333332     


Q ss_pred             -----ceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEE
Q 042435          191 -----QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFV  265 (412)
Q Consensus       191 -----~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl  265 (412)
                           ...++|+||+++ ++.+.+....  ..+++..+..++.|++.||+|||+.   +|+|+||||+||++++++.+||
T Consensus        84 ~~~~~~~~~lv~e~~~~-~l~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~kl  157 (302)
T cd07864          84 FKKDKGAFYLVFEYMDH-DLMGLLESGL--VHFSEDHIKSFMKQLLEGLNYCHKK---NFLHRDIKCSNILLNNKGQIKL  157 (302)
T ss_pred             ccccCCcEEEEEcccCc-cHHHHHhcCC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCcEEe
Confidence                 378999999976 6666655432  2589999999999999999999998   9999999999999999999999


Q ss_pred             eecCCccccCCCCC-CcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCC
Q 042435          266 ADFGTVRLLDVDSS-NRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSG  335 (412)
Q Consensus       266 ~DfGla~~~~~~~~-~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~  335 (412)
                      +|||++........ ......++..|+|||.+.+ ..++.++|||||||++|||++|+.||........        ...
T Consensus       158 ~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~  237 (302)
T cd07864         158 ADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSP  237 (302)
T ss_pred             CcccccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCC
Confidence            99999986644332 1122346788999998764 4578899999999999999999999863211000        000


Q ss_pred             CcchhhHHhhh----------ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          336 PKIMLIDILYQ----------RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       336 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ......++...          ................+.+++.+||+.||++||++++++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  299 (302)
T cd07864         238 CPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALNS  299 (302)
T ss_pred             ChhhcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            00000000000          00000000000112348899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=3.4e-33  Score=270.09  Aligned_cols=240  Identities=22%  Similarity=0.252  Sum_probs=172.5

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEeccCC-----------------------ccccceEEEe----cCceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHHS-----------------------ETEDSAFVVY----SPQCM  193 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~~-----------------------~~~~~~~~~~----~~~~~  193 (412)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|++...                       ++......+.    .....
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   83 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDV   83 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceE
Confidence            47899999999999999999976 46999999987532                       2222222221    33568


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ++||||+. |+|.+++....   .+++..+..++.|++.||+|||+.   +++||||||+||++++++.+||+|||+++.
T Consensus        84 ~lv~e~~~-~~l~~~~~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~  156 (334)
T cd07855          84 YVVMDLME-SDLHHIIHSDQ---PLTEEHIRYFLYQLLRGLKYIHSA---NVIHRDLKPSNLLVNEDCELRIGDFGMARG  156 (334)
T ss_pred             EEEEehhh-hhHHHHhccCC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEeccccccee
Confidence            99999995 68888876543   489999999999999999999998   999999999999999999999999999976


Q ss_pred             cCCCCCC----cccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccc------c--CCCCcc--
Q 042435          274 LDVDSSN----RTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS------S--SSGPKI--  338 (412)
Q Consensus       274 ~~~~~~~----~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~------~--~~~~~~--  338 (412)
                      .......    .....|+..|+|||.+.+ ..++.++||||||+++|||++|+.||.......      .  ...+..  
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~  236 (334)
T cd07855         157 LSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVL  236 (334)
T ss_pred             ecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhh
Confidence            5432211    123468889999998765 458899999999999999999999986321100      0  000000  


Q ss_pred             ------hhhHHhhhc---cCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          339 ------MLIDILYQR---LSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       339 ------~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                            .........   ...+...........+.+++.+||+.+|++|||+++++.+-
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~  295 (334)
T cd07855         237 NRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQHP  295 (334)
T ss_pred             hhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhCh
Confidence                  000001000   00000000011234588999999999999999999998853

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=2.9e-33  Score=260.47  Aligned_cols=229  Identities=22%  Similarity=0.277  Sum_probs=170.6

Q ss_pred             CcccceeeeecCceEEEEEEeCC-CcEEEEEec--------------------------cCCccccceEEEecCceEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAELPD-GKVVALKKL--------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~~-~~~vAvK~l--------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      +|.+.+.||+|+||.||++.... +..+++|.+                          +|+++......+......++|
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII   80 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence            47888999999999999997643 333444432                          234443333345567788999


Q ss_pred             EEeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          197 YEYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      |||+++++|.+++.... ....+++..++.++.|++.||.|||+.   +++|+||||+||++++ +.++|+|||+++...
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~  156 (260)
T cd08222          81 TEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQR---RILHRDLKAKNIFLKN-NLLKIGDFGVSRLLM  156 (260)
T ss_pred             EEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHc---CccccCCChhheEeec-CCEeecccCceeecC
Confidence            99999999998876422 223589999999999999999999998   9999999999999975 569999999988764


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ..........|++.|+|||...+..++.++|+||||+++|+|++|..||....       ......... ....+..+  
T Consensus       157 ~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~--  226 (260)
T cd08222         157 GSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQN-------FLSVVLRIV-EGPTPSLP--  226 (260)
T ss_pred             CCcccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCcc-------HHHHHHHHH-cCCCCCCc--
Confidence            44333344568889999999988888999999999999999999999986211       111111111 11111111  


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                       ......+.+++.+||+.||++||++.|++++
T Consensus       227 -~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  257 (260)
T cd08222         227 -ETYSRQLNSIMQSMLNKDPSLRPSAAEILRN  257 (260)
T ss_pred             -chhcHHHHHHHHHHhcCChhhCcCHHHHhhC
Confidence             1222347889999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-34  Score=294.82  Aligned_cols=235  Identities=26%  Similarity=0.314  Sum_probs=179.4

Q ss_pred             HHHHHhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEeccCCccc------------------------cceEEEecC
Q 042435          136 ENLIDATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHHSETE------------------------DSAFVVYSP  190 (412)
Q Consensus       136 ~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~~~~~------------------------~~~~~~~~~  190 (412)
                      .++.-..++|++.++||+|+||.|..++++ +++++|+|+++.....                        ..+..+.++
T Consensus        68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~  147 (1317)
T KOG0612|consen   68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDE  147 (1317)
T ss_pred             HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCc
Confidence            455566789999999999999999999874 6899999988652221                        122237788


Q ss_pred             ceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCC
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGT  270 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGl  270 (412)
                      .++|+|||||+||+|-.++....   .++..-...++..|+-||.-||+.   |+|||||||+|||+|.+|++||+|||.
T Consensus       148 ~~LYlVMdY~pGGDlltLlSk~~---~~pE~~ArFY~aEiVlAldslH~m---gyVHRDiKPDNvLld~~GHikLADFGs  221 (1317)
T KOG0612|consen  148 RYLYLVMDYMPGGDLLTLLSKFD---RLPEDWARFYTAEIVLALDSLHSM---GYVHRDIKPDNVLLDKSGHIKLADFGS  221 (1317)
T ss_pred             cceEEEEecccCchHHHHHhhcC---CChHHHHHHHHHHHHHHHHHHHhc---cceeccCCcceeEecccCcEeeccchh
Confidence            99999999999999999998765   366666667889999999999999   999999999999999999999999999


Q ss_pred             ccccCCCCCCc-cccccccccccccccc----C-cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHh
Q 042435          271 VRLLDVDSSNR-TLQAGTYGYIALELVY----T-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDIL  344 (412)
Q Consensus       271 a~~~~~~~~~~-~~~~gt~~y~aPE~~~----~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~  344 (412)
                      +-.+..+.... ...+|||.|++||++.    + +.|++.+|.||+||++|||+.|..||....-+       .....++
T Consensus       222 Clkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslv-------eTY~KIm  294 (1317)
T KOG0612|consen  222 CLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLV-------ETYGKIM  294 (1317)
T ss_pred             HHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHH-------HHHHHHh
Confidence            87776554443 5668999999999986    3 67899999999999999999999999732111       0111122


Q ss_pred             hh--ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCC---HHHHHHH
Q 042435          345 YQ--RLSPPINQKIIQDIILVSTIALACLRSKPKSRPT---MQRISQE  387 (412)
Q Consensus       345 ~~--~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs---~~evl~~  387 (412)
                      +-  .+..|.   .........+|+.+.+. +|+.|..   ++|+-.|
T Consensus       295 ~hk~~l~FP~---~~~VSeeakdLI~~ll~-~~e~RLgrngiedik~H  338 (1317)
T KOG0612|consen  295 NHKESLSFPD---ETDVSEEAKDLIEALLC-DREVRLGRNGIEDIKNH  338 (1317)
T ss_pred             chhhhcCCCc---ccccCHHHHHHHHHHhc-ChhhhcccccHHHHHhC
Confidence            11  222221   11123346677766554 8888887   8888765

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.5e-33  Score=269.27  Aligned_cols=243  Identities=23%  Similarity=0.237  Sum_probs=176.1

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEeccCC-----------------------ccccceEEEecC-----ceEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHHS-----------------------ETEDSAFVVYSP-----QCMF  194 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~~-----------------------~~~~~~~~~~~~-----~~~~  194 (412)
                      +|++.+.||+|+||.||+|... +++.||+|++...                       ++.....++...     ...+
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            4788899999999999999875 5899999976542                       222222223333     3689


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      ++|||++ ++|.+++....   .+++..+..++.|++.||+|||+.   +++||||||+||+++.++.++|+|||++...
T Consensus        81 lv~e~~~-~~l~~~l~~~~---~l~~~~~~~i~~~l~~~l~~LH~~---gi~H~dlkp~nili~~~~~~~L~dfg~~~~~  153 (330)
T cd07834          81 IVTELME-TDLHKVIKSPQ---PLTDDHIQYFLYQILRGLKYLHSA---NVIHRDLKPSNILVNSNCDLKICDFGLARGV  153 (330)
T ss_pred             EEecchh-hhHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccCceEee
Confidence            9999997 48888876543   589999999999999999999998   9999999999999999999999999999876


Q ss_pred             CCCC---CCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccc---------cC-C------
Q 042435          275 DVDS---SNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLS---------SS-S------  334 (412)
Q Consensus       275 ~~~~---~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~---------~~-~------  334 (412)
                      ....   .......++..|+|||.+.+. .++.++|+||||+++|+|++|+.||.......         .. .      
T Consensus       154 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~  233 (330)
T cd07834         154 DPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKF  233 (330)
T ss_pred             cccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhh
Confidence            5443   123344678899999999877 78999999999999999999999986321100         00 0      


Q ss_pred             CCcchhhHHhhhccCC-c--cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH--HhcCCC
Q 042435          335 GPKIMLIDILYQRLSP-P--INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE--LEGKTP  393 (412)
Q Consensus       335 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~--L~~~~~  393 (412)
                      .......+.+...... .  ...........+.+++.+||+.+|++|||+++++++  +++...
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~  297 (330)
T cd07834         234 ITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHD  297 (330)
T ss_pred             ccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhcc
Confidence            0000001111100000 0  000001122347899999999999999999999986  555544

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=7.2e-33  Score=264.79  Aligned_cols=230  Identities=23%  Similarity=0.306  Sum_probs=173.4

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEecc------------------------CCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      +.|+..+.||+|+||.||+|... +++.+|+|.+.                        |+++......+......++||
T Consensus        15 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   94 (308)
T cd06634          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (308)
T ss_pred             HHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEE
Confidence            34666788999999999999864 68899999753                        344444555567778899999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+. |++.+++....  ..+++.++..++.|++.||.|||+.   +++||||||+||+++.++.++|+|||++......
T Consensus        95 e~~~-~~l~~~~~~~~--~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~  168 (308)
T cd06634          95 EYCL-GSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA  168 (308)
T ss_pred             EccC-CCHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHhEEECCCCcEEECCcccceeecCc
Confidence            9996 57777664332  2488999999999999999999998   9999999999999999999999999998765432


Q ss_pred             CCCccccccccccccccccc---CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          278 SSNRTLQAGTYGYIALELVY---TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~---~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                          ....++..|+|||.+.   ...++.++|||||||++|||++|+.||....       ............ .+....
T Consensus       169 ----~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-------~~~~~~~~~~~~-~~~~~~  236 (308)
T cd06634         169 ----NXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN-------AMSALYHIAQNE-SPALQS  236 (308)
T ss_pred             ----ccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCcccc-------HHHHHHHHhhcC-CCCcCc
Confidence                2345788999999874   3567889999999999999999999976321       111111111111 111101


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                        ......+.+++.+||+.+|++||++.+++++..-..
T Consensus       237 --~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~~  272 (308)
T cd06634         237 --GHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLR  272 (308)
T ss_pred             --ccccHHHHHHHHHHhhCCcccCCCHHHHhhCccccc
Confidence              112234788999999999999999999998855443

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=2.5e-33  Score=284.75  Aligned_cols=244  Identities=18%  Similarity=0.188  Sum_probs=169.8

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeCC--CcEE------------------E--------------------EEeccCCc
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELPD--GKVV------------------A--------------------LKKLHHSE  179 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~--~~~v------------------A--------------------vK~l~~~~  179 (412)
                      ...++|++.+.||+|+||+||++..+.  +...                  +                    ++.++|++
T Consensus       145 ~~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~Hpn  224 (501)
T PHA03210        145 EFLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHEN  224 (501)
T ss_pred             hhhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCC
Confidence            345789999999999999999986421  1111                  1                    12357889


Q ss_pred             cccceEEEecCceEEEEEEeccCCceeeeeccCcc--cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe
Q 042435          180 TEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDE--AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL  257 (412)
Q Consensus       180 ~~~~~~~~~~~~~~~lv~ey~~~gsL~~~l~~~~~--~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl  257 (412)
                      +.....++...+..++|+|++. ++|.+++.....  .......+...++.|++.||+|||++   +|+||||||+|||+
T Consensus       225 Iv~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~---gIiHrDLKP~NILl  300 (501)
T PHA03210        225 ILKIEEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDK---KLIHRDIKLENIFL  300 (501)
T ss_pred             cCcEeEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEE
Confidence            9888888888999999999985 567666543321  11233456778999999999999998   99999999999999


Q ss_pred             cCCCcEEEeecCCccccCCCCCC-cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCC-cccccc------
Q 042435          258 NSNLEAFVADFGTVRLLDVDSSN-RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP-GELLLS------  329 (412)
Q Consensus       258 ~~~~~~kl~DfGla~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P-~~~~~~------  329 (412)
                      +.++.+||+|||+++.+...... .....||..|+|||++.+..++.++|||||||++|||++|..+ +.....      
T Consensus       301 ~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~  380 (501)
T PHA03210        301 NCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQL  380 (501)
T ss_pred             CCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHH
Confidence            99999999999999876543222 2345799999999999999999999999999999999998754 321100      


Q ss_pred             ------cc--cCCCC--cchhhHHhhhccCCccchhh---H---HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          330 ------LS--SSSGP--KIMLIDILYQRLSPPINQKI---I---QDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       330 ------~~--~~~~~--~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                            +.  ....+  ...+.+.+............   .   .....+.+++.+|++.||++|||+.|++++
T Consensus       381 ~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~h  454 (501)
T PHA03210        381 LKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAELLAL  454 (501)
T ss_pred             HHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHHHhhC
Confidence                  00  00000  00011111100000000000   0   011236677889999999999999999875

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=2.2e-32  Score=262.00  Aligned_cols=223  Identities=24%  Similarity=0.305  Sum_probs=169.7

Q ss_pred             cccceeeeecCceEEEEEEe-CCCcEEEEEecc------------------------CCccccceEEEecCceEEEEEEe
Q 042435          145 FHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      |...+.||+|+||.||+|.. .+++.||+|.+.                        |+++......+.+.+..++||||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            55567899999999999976 468899999753                        45555556667788889999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +. |++.+++....  ..+++.++..++.|++.||+|||+.   +++|+||+|+||+++.++.++|+|||++.....   
T Consensus       103 ~~-~~l~~~l~~~~--~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~---  173 (313)
T cd06633         103 CL-GSASDLLEVHK--KPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASKSSP---  173 (313)
T ss_pred             CC-CCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChhhEEECCCCCEEEeecCCCcccCC---
Confidence            96 57777665432  2589999999999999999999998   999999999999999999999999999864321   


Q ss_pred             Cccccccccccccccccc---CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          280 NRTLQAGTYGYIALELVY---TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~---~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                       .....|+..|+|||++.   ...++.++|||||||++|||++|..||....       ............. +....  
T Consensus       174 -~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~-------~~~~~~~~~~~~~-~~~~~--  242 (313)
T cd06633         174 -ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN-------AMSALYHIAQNDS-PTLQS--  242 (313)
T ss_pred             -CCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-------hHHHHHHHHhcCC-CCCCc--
Confidence             22346888999999974   4568889999999999999999999986321       1111111111111 11100  


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ......+.+++.+||+.+|.+||++.+++++
T Consensus       243 ~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~~  273 (313)
T cd06633         243 NEWTDSFRGFVDYCLQKIPQERPASAELLRH  273 (313)
T ss_pred             cccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            0111237789999999999999999999975

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=1.1e-32  Score=265.95  Aligned_cols=233  Identities=21%  Similarity=0.285  Sum_probs=168.9

Q ss_pred             eeeeec--CceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTG--GYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G--~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ..||+|  +||+||++.. .+|+.||+|.+                       +|+++.....++..++..++|+||+++
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            346666  9999999976 47999999964                       467777777778888899999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC--
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN--  280 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~--  280 (412)
                      |+|.+++..... ..+++..+..++.|++.||+|||+.   +++||||||+||+++.++.++++||+.+.........  
T Consensus        84 ~~l~~~l~~~~~-~~~~~~~~~~~~~qi~~aL~~lH~~---~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~  159 (328)
T cd08226          84 GSANSLLKTYFP-EGMSEALIGNILFGALRGLNYLHQN---GYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAK  159 (328)
T ss_pred             CCHHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCcccc
Confidence            999988875432 2488899999999999999999988   9999999999999999999999999865332211110  


Q ss_pred             -----cccccccccccccccccCc--ccCcccccHHHHHHHHHHHhCCCCcccccccc-------cCCC-Cc------ch
Q 042435          281 -----RTLQAGTYGYIALELVYTM--VVTEKCVIYSFGVVALEVLMGTHPGELLLSLS-------SSSG-PK------IM  339 (412)
Q Consensus       281 -----~~~~~gt~~y~aPE~~~~~--~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~-------~~~~-~~------~~  339 (412)
                           .....++..|+|||++.+.  .++.++|||||||++|||++|+.||.......       .... +.      ..
T Consensus       160 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (328)
T cd08226         160 VVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCE  239 (328)
T ss_pred             ccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchh
Confidence                 0112345679999998763  47889999999999999999999986321100       0000 00      00


Q ss_pred             hh------------------------HHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          340 LI------------------------DILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       340 ~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      ..                        .........   .........+.+++.+||+.||++|||++|++++-
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~  309 (328)
T cd08226         240 ESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRT---PSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHA  309 (328)
T ss_pred             hhhhccchhhhhcccccchhccccccccccccccc---hhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCH
Confidence            00                        000000000   01112334588999999999999999999998653

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=8.6e-33  Score=268.19  Aligned_cols=240  Identities=22%  Similarity=0.250  Sum_probs=169.7

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEeccC-----------------------CccccceEEEecC------c
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHH-----------------------SETEDSAFVVYSP------Q  191 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~-----------------------~~~~~~~~~~~~~------~  191 (412)
                      .++|...+.||+|+||.||+|.. .+|+.||+|+++.                       +++......+...      .
T Consensus        14 ~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~   93 (342)
T cd07879          14 PERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQ   93 (342)
T ss_pred             ccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCc
Confidence            47899999999999999999976 4689999997643                       3333333333222      3


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                      ..++|+||+.. +|..+..     ..+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||++
T Consensus        94 ~~~lv~e~~~~-~l~~~~~-----~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dlkp~NIll~~~~~~kL~dfg~~  164 (342)
T cd07879          94 DFYLVMPYMQT-DLQKIMG-----HPLSEDKVQYLVYQMLCGLKYIHSA---GIIHRDLKPGNLAVNEDCELKILDFGLA  164 (342)
T ss_pred             eEEEEeccccc-CHHHHHc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCCCC
Confidence            46899999964 6655432     1488999999999999999999998   9999999999999999999999999998


Q ss_pred             cccCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc-------CCCCcchhhH-
Q 042435          272 RLLDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS-------SSGPKIMLID-  342 (412)
Q Consensus       272 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~-------~~~~~~~~~~-  342 (412)
                      +.....   .....++..|+|||.+.+ ..++.++|||||||++|||++|+.||........       ...+.....+ 
T Consensus       165 ~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (342)
T cd07879         165 RHADAE---MTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQK  241 (342)
T ss_pred             cCCCCC---CCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHH
Confidence            764322   223457889999999876 4688999999999999999999999863210000       0000000000 


Q ss_pred             --------Hhhhcc--C-CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH--HhcCCC
Q 042435          343 --------ILYQRL--S-PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE--LEGKTP  393 (412)
Q Consensus       343 --------~~~~~~--~-~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~--L~~~~~  393 (412)
                              ......  . .............+.+++.+||+.||++||+++|++.+  ++...+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~  305 (342)
T cd07879         242 LEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRD  305 (342)
T ss_pred             hcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhccc
Confidence                    000000  0 00000000112347799999999999999999999976  666554

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.5e-32  Score=266.92  Aligned_cols=246  Identities=21%  Similarity=0.227  Sum_probs=176.6

Q ss_pred             cccHHHHHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEE
Q 042435          132 KILYENLIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVV  187 (412)
Q Consensus       132 ~~~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~  187 (412)
                      +-...++..++++|++.+.||+|+||.||+|.. .+++.||+|+++                       |+++......+
T Consensus         6 ~~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~   85 (345)
T cd07877           6 QELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVF   85 (345)
T ss_pred             hhHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeee
Confidence            334567788899999999999999999999965 578999999763                       34444433333


Q ss_pred             ec------CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC
Q 042435          188 YS------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL  261 (412)
Q Consensus       188 ~~------~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~  261 (412)
                      ..      ....+++++++ +++|.+++...    .+++..+..++.|+++||+|||+.   +++||||||+||++++++
T Consensus        86 ~~~~~~~~~~~~~lv~~~~-~~~L~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~  157 (345)
T cd07877          86 TPARSLEEFNDVYLVTHLM-GADLNNIVKCQ----KLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDC  157 (345)
T ss_pred             eecccccccccEEEEehhc-ccCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEcCCC
Confidence            22      23467888887 77888777543    489999999999999999999998   999999999999999999


Q ss_pred             cEEEeecCCccccCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc--------
Q 042435          262 EAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------  332 (412)
Q Consensus       262 ~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------  332 (412)
                      .+||+|||+++.....   .....++..|+|||.+.+ ..++.++|||||||++|||++|+.||........        
T Consensus       158 ~~kl~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~  234 (345)
T cd07877         158 ELKILDFGLARHTDDE---MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV  234 (345)
T ss_pred             CEEEeccccccccccc---ccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHh
Confidence            9999999998754322   223467889999998865 5688899999999999999999999853211000        


Q ss_pred             CCCCcch--------hhHHhh---hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          333 SSGPKIM--------LIDILY---QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       333 ~~~~~~~--------~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      .......        ......   .................+.+++.+|++.||.+||++.+++++=
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~  301 (345)
T cd07877         235 GTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHA  301 (345)
T ss_pred             CCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcCh
Confidence            0000000        000000   0000000000001123478999999999999999999998763

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=1.4e-32  Score=263.26  Aligned_cols=236  Identities=19%  Similarity=0.192  Sum_probs=166.3

Q ss_pred             cceeeeecCceEEEEEEeCCCcEEEEEecc-----------------------CCccccceEEEecCceEEEEEEeccCC
Q 042435          147 IRYCIGTGGYDSVYKAELPDGKVVALKKLH-----------------------HSETEDSAFVVYSPQCMFFIYEYMERG  203 (412)
Q Consensus       147 ~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~~~~~lv~ey~~~g  203 (412)
                      +.+.+|.|+++.||++.. +++.||||+++                       |+++......+...+..+++|||+++|
T Consensus         6 i~~~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~   84 (314)
T cd08216           6 IGKCFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYG   84 (314)
T ss_pred             hhHhhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCC
Confidence            344455666666666655 78999999753                       445555555677788899999999999


Q ss_pred             ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC----
Q 042435          204 SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS----  279 (412)
Q Consensus       204 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~----  279 (412)
                      +|.+++..... ..+++.....++.|++.||+|||++   +|+||||||+||+++.++.+|++|||.+........    
T Consensus        85 ~l~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~LH~~---~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~  160 (314)
T cd08216          85 SCEDLLKTHFP-EGLPELAIAFILKDVLNALDYIHSK---GFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRV  160 (314)
T ss_pred             CHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCcceEEEecCCceEEecCccceeeccccccccc
Confidence            99998875432 2478889999999999999999998   999999999999999999999999998865432211    


Q ss_pred             ---CcccccccccccccccccC--cccCcccccHHHHHHHHHHHhCCCCccccccccc------CCCC----cch-----
Q 042435          280 ---NRTLQAGTYGYIALELVYT--MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS------SSGP----KIM-----  339 (412)
Q Consensus       280 ---~~~~~~gt~~y~aPE~~~~--~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~------~~~~----~~~-----  339 (412)
                         ......++..|+|||++..  ..++.++|||||||++|||++|+.||........      ....    ...     
T Consensus       161 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (314)
T cd08216         161 VHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYE  240 (314)
T ss_pred             cccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhc
Confidence               1123456788999999865  3578899999999999999999999973211000      0000    000     


Q ss_pred             --hhH----HhhhccCC-ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          340 --LID----ILYQRLSP-PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       340 --~~~----~~~~~~~~-~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                        ..+    ........ ............+.+++.+||+.||++|||++|++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~  295 (314)
T cd08216         241 DSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNH  295 (314)
T ss_pred             CCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcC
Confidence              000    00000000 0000011122357889999999999999999999875

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=1.1e-32  Score=263.19  Aligned_cols=240  Identities=22%  Similarity=0.244  Sum_probs=168.0

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------CCccccceEEEe--------c
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------HSETEDSAFVVY--------S  189 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------~~~~~~~~~~~~--------~  189 (412)
                      .++|++.+.||+|+||.||+|... +++.+|+|++.                       |+++......+.        .
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            578999999999999999999764 68999999753                       333333322222        2


Q ss_pred             CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      ....++|+||+.+ +|...+....  ..+++..+..++.|+++||+|||+.   +++|+||||+||++++++.++|+|||
T Consensus        87 ~~~~~lv~~~~~~-~l~~~~~~~~--~~~~~~~~~~i~~~l~~al~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg  160 (311)
T cd07866          87 RGSVYMVTPYMDH-DLSGLLENPS--VKLTESQIKCYMLQLLEGINYLHEN---HILHRDIKAANILIDNQGILKIADFG  160 (311)
T ss_pred             CceEEEEEecCCc-CHHHHHhccc--cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECcCc
Confidence            3357999999965 6666555432  2589999999999999999999998   99999999999999999999999999


Q ss_pred             CccccCCCCCC-----------cccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccccc-----
Q 042435          270 TVRLLDVDSSN-----------RTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS-----  332 (412)
Q Consensus       270 la~~~~~~~~~-----------~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~-----  332 (412)
                      +++........           .....+++.|+|||.+.+. .++.++||||||+++|||++|+.||........     
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~  240 (311)
T cd07866         161 LARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIF  240 (311)
T ss_pred             cchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence            99765432211           1223567889999987654 578999999999999999999999863211000     


Q ss_pred             ---CCCCcchhh------H----HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          333 ---SSGPKIMLI------D----ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       333 ---~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                         .........      .    .......+............+.+++.+|++.||++|||+.|++.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~~  308 (311)
T cd07866         241 KLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALEH  308 (311)
T ss_pred             HHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhcC
Confidence               000000000      0    000000000000001111347899999999999999999998864

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=1.1e-32  Score=265.93  Aligned_cols=240  Identities=22%  Similarity=0.254  Sum_probs=174.8

Q ss_pred             HHHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEec-Cc
Q 042435          137 NLIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVYS-PQ  191 (412)
Q Consensus       137 ~l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~-~~  191 (412)
                      ++...+++|++.+.||+|+||.||+|.. .+++.||+|++.                       |+++......+.. ..
T Consensus         4 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~   83 (328)
T cd07856           4 TVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLE   83 (328)
T ss_pred             ceeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCC
Confidence            4556789999999999999999999975 479999999652                       4444444444443 55


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                      ..++++||+ +++|.++++..    .+++.....++.|+++||+|||+.   +++||||+|+||++++++.++|+|||.+
T Consensus        84 ~~~lv~e~~-~~~L~~~~~~~----~~~~~~~~~~~~ql~~aL~~LH~~---~iiH~dl~p~Nili~~~~~~~l~dfg~~  155 (328)
T cd07856          84 DIYFVTELL-GTDLHRLLTSR----PLEKQFIQYFLYQILRGLKYVHSA---GVVHRDLKPSNILINENCDLKICDFGLA  155 (328)
T ss_pred             cEEEEeehh-ccCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEeECCCCCEEeCccccc
Confidence            789999999 56888777643    378888889999999999999998   9999999999999999999999999998


Q ss_pred             cccCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccc------c--CCCCcc----
Q 042435          272 RLLDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS------S--SSGPKI----  338 (412)
Q Consensus       272 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~------~--~~~~~~----  338 (412)
                      ......   .....++..|+|||.+.+ ..++.++||||||+++|||+||+.||.......      .  ...+..    
T Consensus       156 ~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (328)
T cd07856         156 RIQDPQ---MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINT  232 (328)
T ss_pred             cccCCC---cCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHh
Confidence            754322   123457889999998765 568999999999999999999999986321100      0  000000    


Q ss_pred             ----hhhHHhhhc-c--CCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          339 ----MLIDILYQR-L--SPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       339 ----~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                          ...+..... .  ..+...........+.+++.+||+.+|++|||+++++.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~  288 (328)
T cd07856         233 ICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAH  288 (328)
T ss_pred             ccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence                000000000 0  000000001112458899999999999999999999877

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.7e-33  Score=271.77  Aligned_cols=224  Identities=25%  Similarity=0.316  Sum_probs=178.0

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc------------------CCccccceEEEecCceEEEEEEecc
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH------------------HSETEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~------------------~~~~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      .++.|.....+|.|+|+.|-++.. .+++..++|.+.                  |+++.....++.++.+.|+|||++.
T Consensus       320 ~~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~  399 (612)
T KOG0603|consen  320 FTESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLD  399 (612)
T ss_pred             cchhhccccccCCCCccceeeeeccccccchhheeccccccccccccchhhhhcCCCcceeecceecCCceeeeeehhcc
Confidence            367888889999999999988865 568888888763                  5566666677888889999999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe-cCCCcEEEeecCCccccCCCCCC
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL-NSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl-~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      +|-+.+.+.....   .. ..+..|+.+++.|+.|||++   +++||||||+|||+ ++.++++|+|||.++.....   
T Consensus       400 g~ell~ri~~~~~---~~-~e~~~w~~~lv~Av~~LH~~---gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~---  469 (612)
T KOG0603|consen  400 GGELLRRIRSKPE---FC-SEASQWAAELVSAVDYLHEQ---GVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS---  469 (612)
T ss_pred             ccHHHHHHHhcch---hH-HHHHHHHHHHHHHHHHHHhc---CeeecCCChhheeecCCCCcEEEEEechhhhCchh---
Confidence            9887766655431   22 66778999999999999998   99999999999999 58899999999999876554   


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ....+-|..|.|||++....|++++|+||||++||||++|+.||...        +..  .++......++..   ....
T Consensus       470 ~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~--------P~~--~ei~~~i~~~~~s---~~vS  536 (612)
T KOG0603|consen  470 CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAH--------PAG--IEIHTRIQMPKFS---ECVS  536 (612)
T ss_pred             hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccC--------Cch--HHHHHhhcCCccc---cccC
Confidence            22345678999999999999999999999999999999999998732        111  2222222222221   1222


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+|+.+||+.||.+||+|+++..+
T Consensus       537 ~~AKdLl~~LL~~dP~~Rl~~~~i~~h  563 (612)
T KOG0603|consen  537 DEAKDLLQQLLQVDPALRLGADEIGAH  563 (612)
T ss_pred             HHHHHHHHHhccCChhhCcChhhhccC
Confidence            347899999999999999999999865

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=1.4e-32  Score=258.58  Aligned_cols=237  Identities=21%  Similarity=0.240  Sum_probs=172.0

Q ss_pred             cccceeeeecCceEEEEEEeC-CCcEEEEEeccCCc-----------------------cccceEEEecCceEEEEEEec
Q 042435          145 FHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHHSE-----------------------TEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~~~-----------------------~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      |+..+.||+|+||.||+|... +++.+|+|.++...                       +......+...+..++|+||+
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            556688999999999999875 59999999775432                       222223355667899999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      + ++|.+++....  ..+++..+..++.|++.||+|||+.   +++||||+|+||++++++.++|+|||+++........
T Consensus        81 ~-~~l~~~i~~~~--~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~  154 (282)
T cd07829          81 D-MDLKKYLDKRP--GPLSPNLIKSIMYQLLRGLAYCHSH---RILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRT  154 (282)
T ss_pred             C-cCHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChheEEEcCCCCEEEecCCcccccCCCccc
Confidence            7 58998887653  2589999999999999999999998   9999999999999999999999999999876543333


Q ss_pred             cccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcchhhHH-----hhh
Q 042435          281 RTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKIMLIDI-----LYQ  346 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~~~~~~-----~~~  346 (412)
                      .....++..|+|||.+.+. .++.++||||||+++||+++|+.||........        ...........     ...
T Consensus       155 ~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (282)
T cd07829         155 YTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKP  234 (282)
T ss_pred             cCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhcccccccc
Confidence            3334567889999998766 789999999999999999999999863211000        00000000000     000


Q ss_pred             cc---CCccc-hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          347 RL---SPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       347 ~~---~~~~~-~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..   ..... .........+.+++.+||..||++||++.+++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~  279 (282)
T cd07829         235 TFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALKH  279 (282)
T ss_pred             cccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhhC
Confidence            00   00000 0000112348899999999999999999999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=1.9e-32  Score=264.95  Aligned_cols=231  Identities=23%  Similarity=0.197  Sum_probs=168.4

Q ss_pred             cCcc-cceeeeecCceEEEEEEeC-CCcEEEEEeccCC-----------------------------------ccccceE
Q 042435          143 EYFH-IRYCIGTGGYDSVYKAELP-DGKVVALKKLHHS-----------------------------------ETEDSAF  185 (412)
Q Consensus       143 ~~f~-~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~~-----------------------------------~~~~~~~  185 (412)
                      ++|. +.+.||+|+||.||+|... +++.||+|.++..                                   ++.....
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~   87 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVD   87 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeE
Confidence            3454 3567999999999999764 6899999976432                                   2222333


Q ss_pred             EEecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEE
Q 042435          186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFV  265 (412)
Q Consensus       186 ~~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl  265 (412)
                      .+...+..++||||++ |+|.+++....   .+++.....++.|++.||+|||+.   +++||||||+||+++.++.++|
T Consensus        88 ~~~~~~~~~lv~e~~~-~~l~~~l~~~~---~~~~~~~~~~~~ql~~aL~~LH~~---~i~H~dl~~~nill~~~~~~kl  160 (335)
T PTZ00024         88 VYVEGDFINLVMDIMA-SDLKKVVDRKI---RLTESQVKCILLQILNGLNVLHKW---YFMHRDLSPANIFINSKGICKI  160 (335)
T ss_pred             EEecCCcEEEEEeccc-cCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHeEECCCCCEEE
Confidence            4566778999999996 68888876533   488999999999999999999998   9999999999999999999999


Q ss_pred             eecCCccccCC--------------CCCCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccc
Q 042435          266 ADFGTVRLLDV--------------DSSNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSL  330 (412)
Q Consensus       266 ~DfGla~~~~~--------------~~~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~  330 (412)
                      +|||+++....              .........++..|+|||.+.+. .++.++||||||+++|||++|+.||......
T Consensus       161 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~  240 (335)
T PTZ00024        161 ADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEI  240 (335)
T ss_pred             CCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            99999876541              11111233467889999998764 4688999999999999999999998632110


Q ss_pred             ccCCCCcchhhHHhh-----------------------hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          331 SSSSGPKIMLIDILY-----------------------QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       331 ~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                             .....+..                       .................+.+++.+||+.+|++|||++|++.+
T Consensus       241 -------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~  313 (335)
T PTZ00024        241 -------DQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALKH  313 (335)
T ss_pred             -------HHHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhcC
Confidence                   00000000                       000000000001112347899999999999999999999974

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-33  Score=274.75  Aligned_cols=178  Identities=29%  Similarity=0.394  Sum_probs=153.1

Q ss_pred             cccceeeeecCceEEEEEEe-CCCcEEEEEe----------------------ccCCccccceEEEec------CceEEE
Q 042435          145 FHIRYCIGTGGYDSVYKAEL-PDGKVVALKK----------------------LHHSETEDSAFVVYS------PQCMFF  195 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~----------------------l~~~~~~~~~~~~~~------~~~~~l  195 (412)
                      |...+.||+|+||.||+|+. .+|+.||||.                      ++|+|++....+-.+      .....+
T Consensus        15 W~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vl   94 (732)
T KOG4250|consen   15 WEMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVL   94 (732)
T ss_pred             eeehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceE
Confidence            45567899999999999985 5799999993                      567787776555332      346789


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec--C--CCcEEEeecCCc
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN--S--NLEAFVADFGTV  271 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~--~--~~~~kl~DfGla  271 (412)
                      |||||.+|||+..|+.......|+..+.+.++.+++.||.|||++   +|+||||||.||++-  +  .-.-||+|||.|
T Consensus        95 vmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn---~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~A  171 (732)
T KOG4250|consen   95 VMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLREN---GIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAA  171 (732)
T ss_pred             EEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHc---CceeccCCCCcEEEeecCCCceEEeeeccccc
Confidence            999999999999999887777899999999999999999999998   999999999999982  3  334799999999


Q ss_pred             cccCCCCCCccccccccccccccccc-CcccCcccccHHHHHHHHHHHhCCCCccc
Q 042435          272 RLLDVDSSNRTLQAGTYGYIALELVY-TMVVTEKCVIYSFGVVALEVLMGTHPGEL  326 (412)
Q Consensus       272 ~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~s~ksDv~S~Gvil~elltg~~P~~~  326 (412)
                      +.++.+. ......||..|.+||... ...|+...|.|||||++||++||..||..
T Consensus       172 rel~d~s-~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p  226 (732)
T KOG4250|consen  172 RELDDNS-LFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIP  226 (732)
T ss_pred             ccCCCCC-eeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCc
Confidence            9876654 556678999999999998 48899999999999999999999999963

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.98  E-value=2.6e-32  Score=263.73  Aligned_cols=237  Identities=20%  Similarity=0.231  Sum_probs=167.3

Q ss_pred             CcccceeeeecCceEEEEEEeC-C--CcEEEEEecc------------------------CCccccceEEEe----cCce
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-D--GKVVALKKLH------------------------HSETEDSAFVVY----SPQC  192 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~--~~~vAvK~l~------------------------~~~~~~~~~~~~----~~~~  192 (412)
                      +|++.+.||+|+||.||++... +  +..||+|++.                        |+++........    ....
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~   80 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE   80 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence            4788899999999999999874 3  7899999764                        333333222211    1245


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .++++||+. ++|.+++....   .+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++
T Consensus        81 ~~~~~e~~~-~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---givH~dlkp~Nili~~~~~~kl~Dfg~a~  153 (332)
T cd07857          81 LYLYEELME-ADLHQIIRSGQ---PLTDAHFQSFIYQILCGLKYIHSA---NVLHRDLKPGNLLVNADCELKICDFGLAR  153 (332)
T ss_pred             EEEEEeccc-CCHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHeEEcCCCCEEeCcCCCce
Confidence            788899985 68888876543   589999999999999999999998   99999999999999999999999999998


Q ss_pred             ccCCCCC----CcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcch
Q 042435          273 LLDVDSS----NRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKIM  339 (412)
Q Consensus       273 ~~~~~~~----~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~~  339 (412)
                      .......    ......|+..|+|||...+ ..++.++|||||||++|++++|+.||........        .......
T Consensus       154 ~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  233 (332)
T cd07857         154 GFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEET  233 (332)
T ss_pred             ecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHH
Confidence            6543221    1123468899999998765 4688999999999999999999999863211000        0000000


Q ss_pred             hhHHhhh-----------ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          340 LIDILYQ-----------RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       340 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+..+           ................+.+++.+|++.||++|||+.|++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~  292 (332)
T cd07857         234 LSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALEH  292 (332)
T ss_pred             HHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcC
Confidence            0000000           00000000000112348899999999999999999999755

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.98  E-value=4.4e-32  Score=250.60  Aligned_cols=218  Identities=24%  Similarity=0.341  Sum_probs=169.2

Q ss_pred             eeecCceEEEEEEeC-CCcEEEEEeccCC------------------------ccccceEEEecCceEEEEEEeccCCce
Q 042435          151 IGTGGYDSVYKAELP-DGKVVALKKLHHS------------------------ETEDSAFVVYSPQCMFFIYEYMERGSL  205 (412)
Q Consensus       151 lG~G~~g~Vy~~~~~-~~~~vAvK~l~~~------------------------~~~~~~~~~~~~~~~~lv~ey~~~gsL  205 (412)
                      ||+|+||.||++... +++.+|+|.++..                        ++......+..++..++||||+++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            689999999999875 5899999976432                        222233346677889999999999999


Q ss_pred             eeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCccccc
Q 042435          206 FCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA  285 (412)
Q Consensus       206 ~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~  285 (412)
                      .+++....   .+++.....++.|++.||.|||+.   +++|+||+|+||+++.++.++|+|||++..............
T Consensus        81 ~~~l~~~~---~l~~~~~~~~~~qi~~~l~~lh~~---~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~  154 (250)
T cd05123          81 FSHLSKEG---RFSEERARFYAAEIVLALEYLHSL---GIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFC  154 (250)
T ss_pred             HHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccCCc
Confidence            99887553   489999999999999999999998   999999999999999999999999999886644332334456


Q ss_pred             ccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHH
Q 042435          286 GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVST  365 (412)
Q Consensus       286 gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (412)
                      ++..|+|||...+...+.++|+||||+++||+++|+.||...       ...............  .+...   ...+.+
T Consensus       155 ~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~-------~~~~~~~~~~~~~~~--~~~~~---~~~l~~  222 (250)
T cd05123         155 GTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAE-------DRKEIYEKILKDPLR--FPEFL---SPEARD  222 (250)
T ss_pred             CCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCC-------CHHHHHHHHhcCCCC--CCCCC---CHHHHH
Confidence            888999999998888899999999999999999999998632       111111222221111  11111   233788


Q ss_pred             HHHhcCcCCCCCCCCH---HHHHH
Q 042435          366 IALACLRSKPKSRPTM---QRISQ  386 (412)
Q Consensus       366 l~~~Cl~~dP~~RPs~---~evl~  386 (412)
                      ++.+||..||++||++   +++.+
T Consensus       223 ~i~~~l~~~p~~R~~~~~~~~l~~  246 (250)
T cd05123         223 LISGLLQKDPTKRLGSGGAEEIKA  246 (250)
T ss_pred             HHHHHhcCCHhhCCCcccHHHHHh
Confidence            9999999999999999   55543

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.98  E-value=4.1e-32  Score=284.28  Aligned_cols=125  Identities=25%  Similarity=0.402  Sum_probs=109.7

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEecc------------------------CCccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~lv  196 (412)
                      .++|.+.+.||+|+||.||+|... +++.||||.++                        |+++......+...+..++|
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lV   82 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLV   82 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEE
Confidence            367899999999999999999875 68999999763                        45555556667778899999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      |||+++++|.+++....   .+++...+.++.||+.||+|||.+   +|+||||||+|||++.++.+||+|||+++
T Consensus        83 mEy~~g~~L~~li~~~~---~l~~~~~~~i~~qil~aL~yLH~~---gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          83 MEYLIGGDVKSLLHIYG---YFDEEMAVKYISEVALALDYLHRH---GIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             EeCCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            99999999999886543   478889999999999999999998   99999999999999999999999999986

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.98  E-value=2.1e-32  Score=274.89  Aligned_cols=242  Identities=24%  Similarity=0.372  Sum_probs=197.7

Q ss_pred             ccHHHHHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEe--
Q 042435          133 ILYENLIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVY--  188 (412)
Q Consensus       133 ~~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~--  188 (412)
                      +.++.+.+.++-|++.+.||.|.+|.||+++. ++++.+|+|.+                     +|+|.....+++.  
T Consensus         9 ~~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~   88 (953)
T KOG0587|consen    9 IDLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKK   88 (953)
T ss_pred             cchhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEe
Confidence            44667778889999999999999999999965 57888999865                     4666666665543  


Q ss_pred             ---cCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEE
Q 042435          189 ---SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFV  265 (412)
Q Consensus       189 ---~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl  265 (412)
                         .++.+|||||||.+||..+++++.. +..+.|..+..|++.++.||.+||.+   .++|||+|-.|||++.++.+|+
T Consensus        89 ~~~~~DqLWLVMEfC~gGSVTDLVKn~~-g~rl~E~~IaYI~re~lrgl~HLH~n---kviHRDikG~NiLLT~e~~VKL  164 (953)
T KOG0587|consen   89 DPGNGDQLWLVMEFCGGGSVTDLVKNTK-GNRLKEEWIAYILREILRGLAHLHNN---KVIHRDIKGQNVLLTENAEVKL  164 (953)
T ss_pred             cCCCCCeEEEEeeccCCccHHHHHhhhc-ccchhhHHHHHHHHHHHHHHHHHhhc---ceeeecccCceEEEeccCcEEE
Confidence               3678999999999999999988765 45699999999999999999999998   9999999999999999999999


Q ss_pred             eecCCccccCCCCCCcccccccccccccccccC-----cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchh
Q 042435          266 ADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT-----MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIML  340 (412)
Q Consensus       266 ~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~  340 (412)
                      +|||++..++.....+.+..||+.|||||++..     ..|+..+|+||+|++..||--|.+|+.++...       .  
T Consensus       165 vDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPm-------r--  235 (953)
T KOG0587|consen  165 VDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPM-------R--  235 (953)
T ss_pred             eeeeeeeeeecccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcchh-------h--
Confidence            999999988877777778899999999999864     34777999999999999999999997643211       1  


Q ss_pred             hHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          341 IDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .-+..++-+++..........++.+++..|+.+|-++||++.+++++
T Consensus       236 aLF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~h  282 (953)
T KOG0587|consen  236 ALFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEELLKH  282 (953)
T ss_pred             hhccCCCCCCccccchhhHHHHHHHHHHHHHhhccccCcchhhhccC
Confidence            11112222333333344556679999999999999999999998765

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.98  E-value=2.9e-32  Score=264.56  Aligned_cols=237  Identities=21%  Similarity=0.231  Sum_probs=170.0

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEeccCCc-----------------------cccceEEEecC-----
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHHSE-----------------------TEDSAFVVYSP-----  190 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~~~-----------------------~~~~~~~~~~~-----  190 (412)
                      +..++|++.+.||+|+||.||+|... +++.||+|++....                       +......+...     
T Consensus        12 ~~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07851          12 EVPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLED   91 (343)
T ss_pred             cccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccc
Confidence            45678999999999999999999874 58899999875431                       11111112222     


Q ss_pred             -ceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          191 -QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       191 -~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                       ...++|+||+ +++|.+++...    .+++..+..++.|+++||+|||+.   +++||||||+||++++++.++|+|||
T Consensus        92 ~~~~~lv~e~~-~~~L~~~~~~~----~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nill~~~~~~kL~dfg  163 (343)
T cd07851          92 FQDVYLVTHLM-GADLNNIVKCQ----KLSDDHIQFLVYQILRGLKYIHSA---GIIHRDLKPSNIAVNEDCELKILDFG  163 (343)
T ss_pred             cccEEEEEecC-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEcccc
Confidence             2489999999 56898887653    489999999999999999999998   99999999999999999999999999


Q ss_pred             CccccCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccc------c--CCCCcc--
Q 042435          270 TVRLLDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS------S--SSGPKI--  338 (412)
Q Consensus       270 la~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~------~--~~~~~~--  338 (412)
                      ++......   .....++..|+|||.+.+ ..++.++||||||+++||+++|+.||.......      .  ......  
T Consensus       164 ~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~  240 (343)
T cd07851         164 LARHTDDE---MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELL  240 (343)
T ss_pred             cccccccc---ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHH
Confidence            99865432   223457889999998765 467889999999999999999999986321100      0  000000  


Q ss_pred             ------hhhHHhhhccCC---ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          339 ------MLIDILYQRLSP---PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       339 ------~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                            ............   ............+.+++.+||+.||++|||+.|++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h  298 (343)
T cd07851         241 QKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALAH  298 (343)
T ss_pred             hhccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhcC
Confidence                  000000000000   0000000113458899999999999999999999875

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.98  E-value=5.1e-32  Score=262.88  Aligned_cols=238  Identities=23%  Similarity=0.279  Sum_probs=170.7

Q ss_pred             HHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------CCccccceEEEecC----
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------HSETEDSAFVVYSP----  190 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------~~~~~~~~~~~~~~----  190 (412)
                      -...++|++.+.||+|+||.||+|.. .+++.||||++.                       |+++.....++...    
T Consensus        11 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07880          11 WEVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLD   90 (343)
T ss_pred             hccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccc
Confidence            34567899999999999999999975 579999999763                       33433333333322    


Q ss_pred             --ceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeec
Q 042435          191 --QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADF  268 (412)
Q Consensus       191 --~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~Df  268 (412)
                        ...++||||+ +++|.+++...    .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.++++||
T Consensus        91 ~~~~~~lv~e~~-~~~l~~~~~~~----~l~~~~~~~i~~qi~~al~~LH~~---gi~H~dlkp~Nill~~~~~~kl~df  162 (343)
T cd07880          91 RFHDFYLVMPFM-GTDLGKLMKHE----KLSEDRIQFLVYQMLKGLKYIHAA---GIIHRDLKPGNLAVNEDCELKILDF  162 (343)
T ss_pred             ccceEEEEEecC-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeec
Confidence              2468999999 67888777543    489999999999999999999998   9999999999999999999999999


Q ss_pred             CCccccCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc-------CCCCcchh
Q 042435          269 GTVRLLDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS-------SSGPKIML  340 (412)
Q Consensus       269 Gla~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~-------~~~~~~~~  340 (412)
                      |++......   .....++..|+|||.+.+ ..++.++|+||||+++|++++|+.||........       .......+
T Consensus       163 g~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  239 (343)
T cd07880         163 GLARQTDSE---MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEF  239 (343)
T ss_pred             ccccccccC---ccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHH
Confidence            999865332   223457889999998875 4588899999999999999999999863211000       00000000


Q ss_pred             hHHhh--------hccCCccchh----hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          341 IDILY--------QRLSPPINQK----IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       341 ~~~~~--------~~~~~~~~~~----~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+.        ..+.......    .......+.+++.+|++.||++|||+.+++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~  298 (343)
T cd07880         240 VQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAH  298 (343)
T ss_pred             HHhhcchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            00000        0000000000    00112247799999999999999999999843

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.98  E-value=3.2e-32  Score=250.38  Aligned_cols=203  Identities=21%  Similarity=0.165  Sum_probs=158.2

Q ss_pred             cCceEEEEEEe-CCCcEEEEEeccC----------------CccccceEEEecCceEEEEEEeccCCceeeeeccCcccc
Q 042435          154 GGYDSVYKAEL-PDGKVVALKKLHH----------------SETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAI  216 (412)
Q Consensus       154 G~~g~Vy~~~~-~~~~~vAvK~l~~----------------~~~~~~~~~~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~  216 (412)
                      |.+|.||++.. .+++.+|+|+++.                +++......+...+..++||||+++|+|.+++....   
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~---   80 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSSEYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKFL---   80 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchhhhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHHhc---
Confidence            89999999976 5789999998753                333444444667788999999999999998886543   


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcccccccccccccccc
Q 042435          217 ELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELV  296 (412)
Q Consensus       217 ~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~  296 (412)
                      .+++.....++.|++.||+|||+.   +++||||||+||+++.++.++++|||.+.......   ....++..|+|||..
T Consensus        81 ~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~---~~~~~~~~y~aPE~~  154 (237)
T cd05576          81 NIPEECVKRWAAEMVVALDALHRE---GIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSC---DGEAVENMYCAPEVG  154 (237)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCCCEEEecccchhcccccc---ccCCcCccccCCccc
Confidence            489999999999999999999998   99999999999999999999999999876543321   223456789999999


Q ss_pred             cCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCC
Q 042435          297 YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPK  376 (412)
Q Consensus       297 ~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~  376 (412)
                      .+..++.++||||+|+++|||++|+.|+......         ........++    ..   ....+.+++.+|++.||+
T Consensus       155 ~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~---------~~~~~~~~~~----~~---~~~~~~~li~~~l~~dp~  218 (237)
T cd05576         155 GISEETEACDWWSLGAILFELLTGKTLVECHPSG---------INTHTTLNIP----EW---VSEEARSLLQQLLQFNPT  218 (237)
T ss_pred             CCCCCCchhhHHHHHHHHHHHHHCcchhhcCchh---------cccccccCCc----cc---CCHHHHHHHHHHccCCHH
Confidence            8888899999999999999999999886521100         0000000011    11   122377899999999999


Q ss_pred             CCCCH
Q 042435          377 SRPTM  381 (412)
Q Consensus       377 ~RPs~  381 (412)
                      +||++
T Consensus       219 ~R~~~  223 (237)
T cd05576         219 ERLGA  223 (237)
T ss_pred             HhcCC
Confidence            99997

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.97  E-value=4.7e-32  Score=263.04  Aligned_cols=238  Identities=21%  Similarity=0.209  Sum_probs=165.9

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc---------------------CCccccceEEEe-----------
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH---------------------HSETEDSAFVVY-----------  188 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~---------------------~~~~~~~~~~~~-----------  188 (412)
                      ..+|.+.+.||.|+||.||+|.. .+|+.||+|.+.                     |+++......+.           
T Consensus         4 ~~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (342)
T cd07854           4 GSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVG   83 (342)
T ss_pred             CcceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccc
Confidence            36789999999999999999976 468999999763                     333332222111           


Q ss_pred             ---cCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec-CCCcEE
Q 042435          189 ---SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN-SNLEAF  264 (412)
Q Consensus       189 ---~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~-~~~~~k  264 (412)
                         .....++||||++ ++|.+++...    .+++.....++.|++.||.|||+.   +++||||||+||+++ ++..++
T Consensus        84 ~~~~~~~~~lv~e~~~-~~L~~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~---givH~dikp~Nili~~~~~~~k  155 (342)
T cd07854          84 SLTELNSVYIVQEYME-TDLANVLEQG----PLSEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANVFINTEDLVLK  155 (342)
T ss_pred             cccccceEEEEeeccc-ccHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCceEE
Confidence               1235789999997 5887777543    488999999999999999999998   999999999999997 456789


Q ss_pred             EeecCCccccCCCCCC---cccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc-------C
Q 042435          265 VADFGTVRLLDVDSSN---RTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS-------S  333 (412)
Q Consensus       265 l~DfGla~~~~~~~~~---~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~-------~  333 (412)
                      ++|||+++........   .....++..|+|||.+.+ ..++.++|||||||++|||++|+.||........       .
T Consensus       156 l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~~  235 (342)
T cd07854         156 IGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESV  235 (342)
T ss_pred             ECCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhc
Confidence            9999999765432111   122357889999998654 5678899999999999999999999963211000       0


Q ss_pred             CCC-c---chh----hHHhhhccCCc---cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          334 SGP-K---IML----IDILYQRLSPP---INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       334 ~~~-~---~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ... .   ...    ...........   ...........+.+++.+||+.||++|||++|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h  300 (342)
T cd07854         236 PVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALMH  300 (342)
T ss_pred             CCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhCC
Confidence            000 0   000    00000000000   000000112347789999999999999999999864

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=3.9e-32  Score=264.62  Aligned_cols=230  Identities=24%  Similarity=0.327  Sum_probs=186.4

Q ss_pred             HhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEe-----------------------ccCCccccceEEEecCceEEE
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKK-----------------------LHHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~-----------------------l~~~~~~~~~~~~~~~~~~~l  195 (412)
                      .-...|.+...||+|.|+.|..|.. .++..||||.                       +.|+++++...+......+|+
T Consensus        53 ~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lyl  132 (596)
T KOG0586|consen   53 NSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYL  132 (596)
T ss_pred             ccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEE
Confidence            3456789999999999999999976 4689999994                       468999999999999999999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||||+.+|.+++++..+..   ........++.|+.+|++|||++   .|+|||||.+|||++.++++||+|||++..+.
T Consensus       133 V~eya~~ge~~~yl~~~gr---~~e~~ar~~F~q~vsaveYcH~k---~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~  206 (596)
T KOG0586|consen  133 VMEYASGGELFDYLVKHGR---MKEKEARAKFRQIVSAVEYCHSK---NIVHRDLKAENILLDENMNIKIADFGFSTFFD  206 (596)
T ss_pred             EEEeccCchhHHHHHhccc---chhhhhhhhhHHHHHHHHHHhhc---ceeccccchhhcccccccceeeeccccceeec
Confidence            9999999999999987763   44477788999999999999999   99999999999999999999999999999877


Q ss_pred             CCCCCcccccccccccccccccCcccC-cccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVT-EKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s-~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      ... .....+|++.|.|||++.+..|. +++|+||+|+++|-|+.|..||+...-.       ..-..++.....-+.. 
T Consensus       207 ~~~-~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk-------~Lr~rvl~gk~rIp~~-  277 (596)
T KOG0586|consen  207 YGL-MLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLK-------ELRPRVLRGKYRIPFY-  277 (596)
T ss_pred             ccc-cccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCcccc-------cccchheeeeecccce-
Confidence            433 33456899999999999988765 6899999999999999999999832100       0001122222222211 


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                       ..   ....+++.+++-.+|.+|++++++.++-
T Consensus       278 -ms---~dce~lLrk~lvl~Pskr~~~dqim~~~  307 (596)
T KOG0586|consen  278 -MS---CDCEDLLRKFLVLNPSKRGPCDQIMKDR  307 (596)
T ss_pred             -ee---chhHHHHHHhhccCccccCCHHHhhhhc
Confidence             11   1256788899999999999999998763

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.97  E-value=4.7e-32  Score=250.48  Aligned_cols=243  Identities=18%  Similarity=0.238  Sum_probs=187.7

Q ss_pred             HHHHHHhhcCcccceeeeecCceEEEEEEeCC------CcEEEEEe----------------------ccCCccccceEE
Q 042435          135 YENLIDATEYFHIRYCIGTGGYDSVYKAELPD------GKVVALKK----------------------LHHSETEDSAFV  186 (412)
Q Consensus       135 ~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~------~~~vAvK~----------------------l~~~~~~~~~~~  186 (412)
                      .+++.-...+++...++-+|.||.||+|.|.+      .+.|-+|.                      +.|+|......+
T Consensus       276 ~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V  355 (563)
T KOG1024|consen  276 LQELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGV  355 (563)
T ss_pred             HHhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEE
Confidence            35555556678888899999999999996643      33455553                      357787777776


Q ss_pred             Ee-cCceEEEEEEeccCCceeeeec-----cCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC
Q 042435          187 VY-SPQCMFFIYEYMERGSLFCVLR-----DDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN  260 (412)
Q Consensus       187 ~~-~~~~~~lv~ey~~~gsL~~~l~-----~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~  260 (412)
                      +. +.+..+.+|.++.-|+|..+|.     +......++-.+...++.|++.|++|||.+   +++|.||..+|+++|+.
T Consensus       356 ~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~---~ViHkDiAaRNCvIdd~  432 (563)
T KOG1024|consen  356 SIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNH---GVIHKDIAARNCVIDDQ  432 (563)
T ss_pred             EeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhc---Ccccchhhhhcceehhh
Confidence            54 4567889999999999999998     333445678888899999999999999999   99999999999999999


Q ss_pred             CcEEEeecCCccccCCCCCCc--ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCc
Q 042435          261 LEAFVADFGTVRLLDVDSSNR--TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPK  337 (412)
Q Consensus       261 ~~~kl~DfGla~~~~~~~~~~--~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~  337 (412)
                      .++||+|=.+++.+-+.+.+.  ...-.+..||+||.+....|+.++|||||||+||||+| |+.|+...       ++.
T Consensus       433 LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeI-------DPf  505 (563)
T KOG1024|consen  433 LQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEI-------DPF  505 (563)
T ss_pred             eeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCcccc-------CHH
Confidence            999999999998765544332  22234678999999999999999999999999999998 99998633       222


Q ss_pred             chhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          338 IMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                       .+...+....+-..+-.+++   +++.++..||+.+|++||+++|++.-|.+-
T Consensus       506 -Em~~ylkdGyRlaQP~NCPD---eLf~vMacCWallpeeRPsf~Qlv~cLseF  555 (563)
T KOG1024|consen  506 -EMEHYLKDGYRLAQPFNCPD---ELFTVMACCWALLPEERPSFSQLVICLSEF  555 (563)
T ss_pred             -HHHHHHhccceecCCCCCcH---HHHHHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence             22333333222221223333   488999999999999999999999988753

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.97  E-value=1.3e-32  Score=247.49  Aligned_cols=182  Identities=24%  Similarity=0.316  Sum_probs=147.6

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeCC-----CcEEEEEec-----------------------cCCccccceEEEec-C
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELPD-----GKVVALKKL-----------------------HHSETEDSAFVVYS-P  190 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~-----~~~vAvK~l-----------------------~~~~~~~~~~~~~~-~  190 (412)
                      +....|+....||+|.||.||||.-.+     .+.+|+|++                       +|+|+.....++.+ +
T Consensus        21 e~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d  100 (438)
T KOG0666|consen   21 EDLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHD  100 (438)
T ss_pred             HHHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccC
Confidence            445678889999999999999995432     347899975                       45555555555444 7


Q ss_pred             ceEEEEEEeccCCceeeeeccCc--ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC----CcEE
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDD--EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN----LEAF  264 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~--~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~----~~~k  264 (412)
                      ..+++++||.+. +|..+++-++  ....++-.....|+.||+.|+.|||++   =|+||||||.|||+..+    |.+|
T Consensus       101 ~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~N---WvlHRDLKPaNIlvmgdgperG~VK  176 (438)
T KOG0666|consen  101 KKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSN---WVLHRDLKPANILVMGDGPERGRVK  176 (438)
T ss_pred             ceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhh---heeeccCCcceEEEeccCCccCeeE
Confidence            789999999976 9998887553  234688888999999999999999998   79999999999999877    9999


Q ss_pred             EeecCCccccCCCCCC---cccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcc
Q 042435          265 VADFGTVRLLDVDSSN---RTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGE  325 (412)
Q Consensus       265 l~DfGla~~~~~~~~~---~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~  325 (412)
                      |+|+|+++.+...-..   ....+-|++|+|||.+.+. .||.+.||||.|||+.||+|-++-|.
T Consensus       177 IaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~  241 (438)
T KOG0666|consen  177 IADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFK  241 (438)
T ss_pred             eecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCcccc
Confidence            9999999987654322   2345679999999999875 58999999999999999999766553

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.97  E-value=2.9e-31  Score=265.81  Aligned_cols=241  Identities=14%  Similarity=0.159  Sum_probs=163.1

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-----------------CCCcEEEEEeccCCccc----------------------
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-----------------PDGKVVALKKLHHSETE----------------------  181 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-----------------~~~~~vAvK~l~~~~~~----------------------  181 (412)
                      ..++|++.++||+|+||.||+|.+                 ..++.||||+++.....                      
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            467899999999999999999964                 23568999997532110                      


Q ss_pred             ------------------cceEEE--------ecCceEEEEEEeccCCceeeeeccCcc---------------------
Q 042435          182 ------------------DSAFVV--------YSPQCMFFIYEYMERGSLFCVLRDDDE---------------------  214 (412)
Q Consensus       182 ------------------~~~~~~--------~~~~~~~lv~ey~~~gsL~~~l~~~~~---------------------  214 (412)
                                        .....+        ...+..+|||||+++|+|.++++....                     
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~  302 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMP  302 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcc
Confidence                              000001        123568999999999999988864210                     


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC-ccccccccccccc
Q 042435          215 AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-RTLQAGTYGYIAL  293 (412)
Q Consensus       215 ~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~-~~~~~gt~~y~aP  293 (412)
                      ...++|..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++........ .....+++.|+||
T Consensus       303 ~~~~~~~~~~~i~~ql~~aL~~lH~~---~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aP  379 (507)
T PLN03224        303 QDKRDINVIKGVMRQVLTGLRKLHRI---GIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPP  379 (507)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCchHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeCh
Confidence            12357888999999999999999998   9999999999999999999999999999765432211 1222347899999


Q ss_pred             ccccCcc--------------------c--CcccccHHHHHHHHHHHhCCC-CcccccccccCCCC-cchhhH---Hhhh
Q 042435          294 ELVYTMV--------------------V--TEKCVIYSFGVVALEVLMGTH-PGELLLSLSSSSGP-KIMLID---ILYQ  346 (412)
Q Consensus       294 E~~~~~~--------------------~--s~ksDv~S~Gvil~elltg~~-P~~~~~~~~~~~~~-~~~~~~---~~~~  346 (412)
                      |.+....                    +  ..+.||||+||++|||++|.. |+............ ......   ....
T Consensus       380 E~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~  459 (507)
T PLN03224        380 EELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQ  459 (507)
T ss_pred             hhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhccc
Confidence            9875322                    1  124799999999999999885 66432111100000 000000   0001


Q ss_pred             ccCCccchhhHHHHHHHHHHHHhcCcCCC---CCCCCHHHHHHH
Q 042435          347 RLSPPINQKIIQDIILVSTIALACLRSKP---KSRPTMQRISQE  387 (412)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP---~~RPs~~evl~~  387 (412)
                      ....+   ..........+++.+++..+|   .+|+|++|+++|
T Consensus       460 ~~~~~---~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~H  500 (507)
T PLN03224        460 KYDFS---LLDRNKEAGWDLACKLITKRDQANRGRLSVGQALSH  500 (507)
T ss_pred             CCCcc---cccccChHHHHHHHHHhccCCCCcccCCCHHHHhCC
Confidence            11111   111122347789999998766   689999999876

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.2e-32  Score=254.36  Aligned_cols=238  Identities=19%  Similarity=0.255  Sum_probs=174.1

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEeccCCcc--------------------cc------ceEEEecCceEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHHSET--------------------ED------SAFVVYSPQCMF  194 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~~~~--------------------~~------~~~~~~~~~~~~  194 (412)
                      ++.|.+...+|+|.||.|-.+.. ..+..||||.++.-..                    ..      ....+...++.+
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiC  167 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHIC  167 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCceE
Confidence            78899999999999999999954 4589999997642110                    00      011134567889


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC---------------
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS---------------  259 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~---------------  259 (412)
                      +|+|.+ |-|+++++.++.. .+++..++..++.|++++++|||+.   +++|-||||+|||+.+               
T Consensus       168 ivfell-G~S~~dFlk~N~y-~~fpi~~ir~m~~QL~~sv~fLh~~---kl~HTDLKPENILfvss~~~~~~~~k~~~~~  242 (415)
T KOG0671|consen  168 IVFELL-GLSTFDFLKENNY-IPFPIDHIRHMGYQLLESVAFLHDL---KLTHTDLKPENILFVSSEYFKTYNPKKKVCF  242 (415)
T ss_pred             EEEecc-ChhHHHHhccCCc-cccchHHHHHHHHHHHHHHHHHHhc---ceeecCCChheEEEeccceEEEeccCCccce
Confidence            999998 5699999987653 3588899999999999999999999   9999999999999932               


Q ss_pred             -----CCcEEEeecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccc---
Q 042435          260 -----NLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS---  331 (412)
Q Consensus       260 -----~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~---  331 (412)
                           +..++++|||.|+.-...   .+..+.|..|.|||++.+-.++.++||||+||||.|+.||..-|+......   
T Consensus       243 ~r~~ks~~I~vIDFGsAtf~~e~---hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLa  319 (415)
T KOG0671|consen  243 IRPLKSTAIKVIDFGSATFDHEH---HSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLA  319 (415)
T ss_pred             eccCCCcceEEEecCCcceeccC---cceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHH
Confidence                 235899999999864332   356688999999999999999999999999999999999998886322100   


Q ss_pred             -----cCCCCcchhhHH-----hh-hcc-----------------CCccc---hhhHHHHHHHHHHHHhcCcCCCCCCCC
Q 042435          332 -----SSSGPKIMLIDI-----LY-QRL-----------------SPPIN---QKIIQDIILVSTIALACLRSKPKSRPT  380 (412)
Q Consensus       332 -----~~~~~~~~~~~~-----~~-~~~-----------------~~~~~---~~~~~~~~~~~~l~~~Cl~~dP~~RPs  380 (412)
                           ....+...+...     .. ..+                 ..+..   .....+...+++|+.+++..||.+|+|
T Consensus       320 MMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiT  399 (415)
T KOG0671|consen  320 MMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRIT  399 (415)
T ss_pred             HHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCcccccc
Confidence                 000000000000     00 000                 00000   011233456999999999999999999


Q ss_pred             HHHHHHH
Q 042435          381 MQRISQE  387 (412)
Q Consensus       381 ~~evl~~  387 (412)
                      +.|++.+
T Consensus       400 l~EAL~H  406 (415)
T KOG0671|consen  400 LREALSH  406 (415)
T ss_pred             HHHHhcC
Confidence            9999865

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.6e-31  Score=241.29  Aligned_cols=226  Identities=21%  Similarity=0.319  Sum_probs=176.2

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEeccCCccccc-------------------------eEEEecCceEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHHSETEDS-------------------------AFVVYSPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~~~~~~~-------------------------~~~~~~~~~~~lv  196 (412)
                      ++|++..+||+|+|++|..+++ ++.+.+|+|.++..-....                         ...+.+...+++|
T Consensus       250 ~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlffv  329 (593)
T KOG0695|consen  250 QDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFFV  329 (593)
T ss_pred             ccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEEE
Confidence            5799999999999999999987 4688999998765322221                         1124567788999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      .||.++|+|--+++.++   .++.....-+...|.-||.|||+.   ||+.||||..|+|+|..+.+|++|+|+.+.--.
T Consensus       330 ieyv~ggdlmfhmqrqr---klpeeharfys~ei~lal~flh~r---giiyrdlkldnvlldaeghikltdygmcke~l~  403 (593)
T KOG0695|consen  330 IEYVNGGDLMFHMQRQR---KLPEEHARFYSAEICLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLG  403 (593)
T ss_pred             EEEecCcceeeehhhhh---cCcHHHhhhhhHHHHHHHHHHhhc---CeeeeeccccceEEccCCceeecccchhhcCCC
Confidence            99999999987777655   588888888999999999999999   999999999999999999999999999986544


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCC-CcchhhHHhhhccCCccchh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSG-PKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  355 (412)
                      .....++.+||+.|+|||++.+..|....|.|++||+++||+.|+.||+..-....... +...+.-++.+.++-|.   
T Consensus       404 ~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilekqiripr---  480 (593)
T KOG0695|consen  404 PGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEKQIRIPR---  480 (593)
T ss_pred             CCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhhcccccc---
Confidence            55556778999999999999999999999999999999999999999985432111111 11112222233333221   


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCC
Q 042435          356 IIQDIILVSTIALACLRSKPKSRP  379 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RP  379 (412)
                        ....+...++..-+.+||.+|.
T Consensus       481 --slsvkas~vlkgflnkdp~erl  502 (593)
T KOG0695|consen  481 --SLSVKASHVLKGFLNKDPKERL  502 (593)
T ss_pred             --eeehhhHHHHHHhhcCCcHHhc
Confidence              1223456677888999999985

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.97  E-value=9.3e-34  Score=249.95  Aligned_cols=229  Identities=22%  Similarity=0.285  Sum_probs=167.9

Q ss_pred             eeeeecCceEEEEEEe-CCCcEEEEEeccCCcc-----------------------ccceEEEecCceEEEEEEeccCCc
Q 042435          149 YCIGTGGYDSVYKAEL-PDGKVVALKKLHHSET-----------------------EDSAFVVYSPQCMFFIYEYMERGS  204 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~~~~-----------------------~~~~~~~~~~~~~~lv~ey~~~gs  204 (412)
                      ..||.|+||+|+|-.+ +.|+..|||+++..+.                       ++..+.++.++..|+.||.|. -|
T Consensus        70 g~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd-~S  148 (361)
T KOG1006|consen   70 GEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMD-IS  148 (361)
T ss_pred             HHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHh-hh
Confidence            5699999999999966 5799999999865544                       333444677888999999995 46


Q ss_pred             eeeeeccCc--ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          205 LFCVLRDDD--EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       205 L~~~l~~~~--~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |..+...-.  ....++....-.|..-.+.||.||-+..  .|+|||+||+|||+|..|.+||||||++..+..+ ...+
T Consensus       149 lDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~l--kiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~S-iAkT  225 (361)
T KOG1006|consen  149 LDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEEL--KIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDS-IAKT  225 (361)
T ss_pred             HHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHh--hhhhccCChhheEEecCCCEeeecccchHhHHHH-HHhh
Confidence            655443211  1224677767777778899999998764  8999999999999999999999999998766432 2334


Q ss_pred             cccccccccccccccC--cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCc-cchhhHHH
Q 042435          283 LQAGTYGYIALELVYT--MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP-INQKIIQD  359 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~--~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  359 (412)
                      ...|...|||||.+..  ..|+.+|||||+|++|||+.||+.|+....++      -..+..++....+.- ........
T Consensus       226 ~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~sv------feql~~Vv~gdpp~l~~~~~~~~~  299 (361)
T KOG1006|consen  226 VDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDSV------FEQLCQVVIGDPPILLFDKECVHY  299 (361)
T ss_pred             hccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHHH------HHHHHHHHcCCCCeecCccccccc
Confidence            5578899999999863  34899999999999999999999998743221      111222222211110 01222234


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+..++..|+.+|-++||+..++.++
T Consensus       300 s~~~~~fintCl~Kd~~~Rpky~~Lk~~  327 (361)
T KOG1006|consen  300 SFSMVRFINTCLIKDRSDRPKYDDLKKF  327 (361)
T ss_pred             CHHHHHHHHHHhhcccccCcchhhhhcC
Confidence            4568889999999999999999988654

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=5.6e-32  Score=253.30  Aligned_cols=233  Identities=26%  Similarity=0.367  Sum_probs=175.6

Q ss_pred             CcccceeeeecCceEEEEE-EeCCCcEEEEEe----------------------------ccCCccccceEE-EecCceE
Q 042435          144 YFHIRYCIGTGGYDSVYKA-ELPDGKVVALKK----------------------------LHHSETEDSAFV-VYSPQCM  193 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~-~~~~~~~vAvK~----------------------------l~~~~~~~~~~~-~~~~~~~  193 (412)
                      +|-..++||+|||+.|||| ++...+-||||.                            ++|+.++..+.. ..+.+.+
T Consensus       464 RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsF  543 (775)
T KOG1151|consen  464 RYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSF  543 (775)
T ss_pred             HHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccc
Confidence            4666789999999999999 456678899984                            356666665544 3467788


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec---CCCcEEEeecCC
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN---SNLEAFVADFGT  270 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~---~~~~~kl~DfGl  270 (412)
                      |-|+|||+|.+|.-+|+.+.   .++......|+.||+.||.||.+. .++|+|-||||.|||+-   ..+.+||+|||+
T Consensus       544 CTVLEYceGNDLDFYLKQhk---lmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDFGL  619 (775)
T KOG1151|consen  544 CTVLEYCEGNDLDFYLKQHK---LMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDFGL  619 (775)
T ss_pred             eeeeeecCCCchhHHHHhhh---hhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeecch
Confidence            99999999999999998776   578899999999999999999987 78999999999999994   458899999999


Q ss_pred             ccccCCCCCC-------cccccccccccccccccCc----ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcch
Q 042435          271 VRLLDVDSSN-------RTLQAGTYGYIALELVYTM----VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIM  339 (412)
Q Consensus       271 a~~~~~~~~~-------~~~~~gt~~y~aPE~~~~~----~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~  339 (412)
                      ++.++.+...       .+...||.+|++||.+.-+    .++.|.||||.|||+|.++.|+.||....+-.......  
T Consensus       620 SKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdILqeN--  697 (775)
T KOG1151|consen  620 SKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDILQEN--  697 (775)
T ss_pred             hhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHHHHhhh--
Confidence            9998765433       2446799999999988643    47889999999999999999999997432211110000  


Q ss_pred             hhHHhhh-ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          340 LIDILYQ-RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       340 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                        .++.. .+..|..+   ........++.+|++..-++|....++..+
T Consensus       698 --TIlkAtEVqFP~KP---vVsseAkaFIRRCLaYRKeDR~DV~qLA~d  741 (775)
T KOG1151|consen  698 --TILKATEVQFPPKP---VVSSEAKAFIRRCLAYRKEDRIDVQQLACD  741 (775)
T ss_pred             --chhcceeccCCCCC---ccCHHHHHHHHHHHHhhhhhhhhHHHHccC
Confidence              01100 11111111   112236788999999999999888877643

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.97  E-value=8.4e-32  Score=256.71  Aligned_cols=224  Identities=23%  Similarity=0.302  Sum_probs=172.9

Q ss_pred             ceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEEeccCC
Q 042435          148 RYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYEYMERG  203 (412)
Q Consensus       148 ~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~g  203 (412)
                      .++||+|.||+||-|.+ ++|+.||||.+                       +|+.++.....+.+++.+++|||-+. |
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~-G  647 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLH-G  647 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhc-c
Confidence            47899999999999966 68999999965                       46777777777999999999999995 4


Q ss_pred             ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC---CcEEEeecCCccccCCCCCC
Q 042435          204 SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN---LEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       204 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~---~~~kl~DfGla~~~~~~~~~  280 (412)
                      +..+.+-....+ .|+...-..++.||+.||.|||.+   +|+|+||||+|||+.+.   -++||||||+|+.+.... -
T Consensus       648 DMLEMILSsEkg-RL~er~TkFlvtQIL~ALr~LH~k---nIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEks-F  722 (888)
T KOG4236|consen  648 DMLEMILSSEKG-RLPERITKFLVTQILVALRYLHFK---NIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKS-F  722 (888)
T ss_pred             hHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhc---ceeeccCCchheeeccCCCCCceeeccccceeecchhh-h
Confidence            655444333222 477777788899999999999999   99999999999999643   579999999999876543 3


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      +...+||+.|+|||++....|...-|+||.|||+|--++|..||...          +.+.+.+....-.-.+..+.+..
T Consensus       723 RrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEd----------EdIndQIQNAaFMyPp~PW~eis  792 (888)
T KOG4236|consen  723 RRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNED----------EDINDQIQNAAFMYPPNPWSEIS  792 (888)
T ss_pred             hhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCc----------cchhHHhhccccccCCCchhhcC
Confidence            34568999999999999999999999999999999999999999732          22233332211111112233333


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+++...++..-++|-|.+.-+.+
T Consensus       793 ~~AidlIn~LLqVkm~kRysvdk~lsh  819 (888)
T KOG4236|consen  793 PEAIDLINNLLQVKMRKRYSVDKSLSH  819 (888)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHhhccc
Confidence            457788888888888888888765543

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=9.1e-31  Score=236.38  Aligned_cols=242  Identities=20%  Similarity=0.296  Sum_probs=180.1

Q ss_pred             cHHHHHHhhcCcccceeeeecCceEEEEEE-eCCCcEEEEEecc----------------------CCccccceEEEecC
Q 042435          134 LYENLIDATEYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLH----------------------HSETEDSAFVVYSP  190 (412)
Q Consensus       134 ~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~-~~~~~~vAvK~l~----------------------~~~~~~~~~~~~~~  190 (412)
                      +|+|+-..|+     +.||+|+|+.|--+. ..+|..+|||.+.                      |.|+......+.++
T Consensus        74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd  148 (463)
T KOG0607|consen   74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDD  148 (463)
T ss_pred             hHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhccc
Confidence            3567766665     679999999998884 5789999999874                      44555555557788


Q ss_pred             ceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC---cEEEee
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL---EAFVAD  267 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~---~~kl~D  267 (412)
                      ..+|||||-|.||+|..+++++.   .++.....++..+|+.||.|||.+   +|.||||||+|||-....   -+||+|
T Consensus       149 ~~FYLVfEKm~GGplLshI~~~~---~F~E~EAs~vvkdia~aLdFlH~k---gIAHRDlKPENiLC~~pn~vsPvKiCD  222 (463)
T KOG0607|consen  149 TRFYLVFEKMRGGPLLSHIQKRK---HFNEREASRVVKDIASALDFLHTK---GIAHRDLKPENILCESPNKVSPVKICD  222 (463)
T ss_pred             ceEEEEEecccCchHHHHHHHhh---hccHHHHHHHHHHHHHHHHHHhhc---CcccccCCccceeecCCCCcCceeeec
Confidence            89999999999999999888765   588899999999999999999999   999999999999996543   489999


Q ss_pred             cCCccccCCC-------CCCccccccccccccccccc-----CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCC
Q 042435          268 FGTVRLLDVD-------SSNRTLQAGTYGYIALELVY-----TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSG  335 (412)
Q Consensus       268 fGla~~~~~~-------~~~~~~~~gt~~y~aPE~~~-----~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~  335 (412)
                      |.+..-+...       .....+.+|+..|||||+..     ...|+.++|.||+|||+|-|++|..||...-...-...
T Consensus       223 fDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWd  302 (463)
T KOG0607|consen  223 FDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWD  302 (463)
T ss_pred             cccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCcc
Confidence            9886543221       11224567899999999863     34588999999999999999999999975432111111


Q ss_pred             C---cchhhHH----hh-hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          336 P---KIMLIDI----LY-QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       336 ~---~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .   -....+.    +. .....| ..++..-.....+++...+..||.+|-++.+++++
T Consensus       303 rGe~Cr~CQ~~LFesIQEGkYeFP-dkdWahIS~eakdlisnLlvrda~~rlsa~~vlnh  361 (463)
T KOG0607|consen  303 RGEVCRVCQNKLFESIQEGKYEFP-DKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLNH  361 (463)
T ss_pred             CCCccHHHHHHHHHHHhccCCcCC-hhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccCC
Confidence            1   1111111    11 122222 23344444557889999999999999999999883

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=5.6e-32  Score=237.01  Aligned_cols=239  Identities=20%  Similarity=0.282  Sum_probs=173.6

Q ss_pred             CcccceeeeecCceEEEEEEeC-CCcEEEEEe-----------------------ccCCccccceEEEe--------cCc
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-DGKVVALKK-----------------------LHHSETEDSAFVVY--------SPQ  191 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~-----------------------l~~~~~~~~~~~~~--------~~~  191 (412)
                      .|+-..+||+|.||+||+|+.+ +|+.||+|+                       ++|+++.....+|.        ...
T Consensus        18 ~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~   97 (376)
T KOG0669|consen   18 KYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRA   97 (376)
T ss_pred             HHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccc
Confidence            3555678999999999999774 578889884                       35666655444433        234


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                      .+|+|+++|+. +|..+|.+..  ..++..++.+++.++..||.|+|..   .|+|||+|++|+|++.++.+||+|||++
T Consensus        98 t~ylVf~~ceh-DLaGlLsn~~--vr~sls~Ikk~Mk~Lm~GL~~iHr~---kilHRDmKaaNvLIt~dgilklADFGla  171 (376)
T KOG0669|consen   98 TFYLVFDFCEH-DLAGLLSNRK--VRFSLSEIKKVMKGLMNGLYYIHRN---KILHRDMKAANVLITKDGILKLADFGLA  171 (376)
T ss_pred             eeeeeHHHhhh-hHHHHhcCcc--ccccHHHHHHHHHHHHHHHHHHHHh---hHHhhcccHhhEEEcCCceEEeeccccc
Confidence            58999999976 8998887654  3588899999999999999999999   9999999999999999999999999999


Q ss_pred             cccCCCCCC----cccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccc-------------ccccC
Q 042435          272 RLLDVDSSN----RTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLL-------------SLSSS  333 (412)
Q Consensus       272 ~~~~~~~~~----~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~-------------~~~~~  333 (412)
                      +.+......    .+..+-|.+|.+||.+.+. .|+++.|||..||++.||+||.+-++...             +....
T Consensus       172 r~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tke  251 (376)
T KOG0669|consen  172 RAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKE  251 (376)
T ss_pred             cceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcc
Confidence            866443221    2344568999999998864 58999999999999999999998775221             11112


Q ss_pred             CCCcchhhHHhhhccCCccchh----hHHHH------HHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          334 SGPKIMLIDILYQRLSPPINQK----IIQDI------ILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~------~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      .++...-.........+|.+..    ..+..      ....+++..++..||.+||++++++++-
T Consensus       252 vWP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh~  316 (376)
T KOG0669|consen  252 VWPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNHD  316 (376)
T ss_pred             cCCCcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhchh
Confidence            2222111111111111111111    11111      1367889999999999999999998875

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.9e-31  Score=253.36  Aligned_cols=226  Identities=21%  Similarity=0.341  Sum_probs=176.3

Q ss_pred             CcccceeeeecCceEEEEEEeCCCc-EEEEEeccCCccccceE------------------------EEecCceEEEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAF------------------------VVYSPQCMFFIYE  198 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~~~~-~vAvK~l~~~~~~~~~~------------------------~~~~~~~~~lv~e  198 (412)
                      +++....||-||||.|=.+...... .+|+|.++...++....                        .+.+...+|+.||
T Consensus       421 dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmE  500 (732)
T KOG0614|consen  421 DLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLME  500 (732)
T ss_pred             hhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhHH
Confidence            3455567999999999999775433 48999887665554321                        1556778899999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      -|-||.|+..|++..   .++..+..-++..+.+|++|||.+   +||.|||||+|.++|.+|.+||.|||+|+.+..+.
T Consensus       501 aClGGElWTiLrdRg---~Fdd~tarF~~acv~EAfeYLH~k---~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~  574 (732)
T KOG0614|consen  501 ACLGGELWTILRDRG---SFDDYTARFYVACVLEAFEYLHRK---GIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGR  574 (732)
T ss_pred             hhcCchhhhhhhhcC---CcccchhhhhHHHHHHHHHHHHhc---CceeccCChhheeeccCCceEEeehhhHHHhccCC
Confidence            999999999999876   578888888999999999999999   99999999999999999999999999999887665


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCC-ccchhhH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP-PINQKII  357 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  357 (412)
                      ... +.+||+.|.|||++.....+.+.|.||+|+++|||+||++||...       .+. .....+-+.+.. ..+....
T Consensus       575 KTw-TFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~-------dpm-ktYn~ILkGid~i~~Pr~I~  645 (732)
T KOG0614|consen  575 KTW-TFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGV-------DPM-KTYNLILKGIDKIEFPRRIT  645 (732)
T ss_pred             cee-eecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCC-------chH-HHHHHHHhhhhhhhcccccc
Confidence            544 469999999999999999999999999999999999999999832       221 122222222211 1112222


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCC-----HHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPT-----MQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  387 (412)
                      .   ...+++.+....+|.+|..     +.||-+|
T Consensus       646 k---~a~~Lik~LCr~~P~ERLG~~~~gI~DIkkH  677 (732)
T KOG0614|consen  646 K---TATDLIKKLCRDNPTERLGYQKGGINDIKKH  677 (732)
T ss_pred             h---hHHHHHHHHHhcCcHhhhccccCChHHHHhh
Confidence            2   2567888888899999975     6676655

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.96  E-value=1.3e-30  Score=217.85  Aligned_cols=174  Identities=22%  Similarity=0.344  Sum_probs=148.4

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +|+..++||+|.||+||||+. .+++.||+|++                       +|.|+++...+...+...-+|+||
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~   82 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHH
Confidence            456668899999999999976 46899999964                       577777777778888899999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      |.. +|..+.....+  .++......++.|+.+||.|+|++   ++.||||||.|.|++.+++.|++|||+++.+.....
T Consensus        83 cdq-dlkkyfdslng--~~d~~~~rsfmlqllrgl~fchsh---nvlhrdlkpqnllin~ngelkladfglarafgipvr  156 (292)
T KOG0662|consen   83 CDQ-DLKKYFDSLNG--DLDPEIVRSFMLQLLRGLGFCHSH---NVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVR  156 (292)
T ss_pred             hhH-HHHHHHHhcCC--cCCHHHHHHHHHHHHhhhhhhhhh---hhhhccCCcceEEeccCCcEEecccchhhhcCCceE
Confidence            965 88877765443  488899999999999999999999   999999999999999999999999999997765544


Q ss_pred             CcccccccccccccccccCcc-cCcccccHHHHHHHHHHHhCCCC
Q 042435          280 NRTLQAGTYGYIALELVYTMV-VTEKCVIYSFGVVALEVLMGTHP  323 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~-~s~ksDv~S~Gvil~elltg~~P  323 (412)
                      ..+...-|.+|.+|.++.+.. |++..|+||-|||+.|+.....|
T Consensus       157 cysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrp  201 (292)
T KOG0662|consen  157 CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRP  201 (292)
T ss_pred             eeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCC
Confidence            455567799999999998754 89999999999999999874444

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.96  E-value=3.6e-31  Score=264.79  Aligned_cols=227  Identities=24%  Similarity=0.315  Sum_probs=171.9

Q ss_pred             cccceeeeecCceE-EEEEEeCCCcEEEEEec-------------------cCCccccceEEEecCceEEEEEEeccCCc
Q 042435          145 FHIRYCIGTGGYDS-VYKAELPDGKVVALKKL-------------------HHSETEDSAFVVYSPQCMFFIYEYMERGS  204 (412)
Q Consensus       145 f~~~~~lG~G~~g~-Vy~~~~~~~~~vAvK~l-------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~gs  204 (412)
                      |...+++|.|+.|+ ||+|.+ +|+.||||++                   .|+|+.+....-.+.+..|+..|.|. .+
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~-~s  588 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLEEFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCA-CS  588 (903)
T ss_pred             eccHHHcccCCCCcEEEEEee-CCceehHHHHhhHhHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhh-hh
Confidence            44456789999885 699998 7899999987                   57888887777788899999999995 59


Q ss_pred             eeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC-----CCcEEEeecCCccccCCCC
Q 042435          205 LFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS-----NLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       205 L~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~-----~~~~kl~DfGla~~~~~~~  278 (412)
                      |.+++.... +.....-.....+..|+++||++||+.   +||||||||.||||+.     ...++|+|||+++.+..+.
T Consensus       589 L~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl---~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~  665 (903)
T KOG1027|consen  589 LQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSL---KIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGK  665 (903)
T ss_pred             HHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhc---ccccccCCCceEEEEccCCCcceeEEecccccccccCCCc
Confidence            999987741 111111134467889999999999997   9999999999999975     3578999999999887654


Q ss_pred             CC---cccccccccccccccccCcccCcccccHHHHHHHHHHHhC-CCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          279 SN---RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMG-THPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       279 ~~---~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg-~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      ..   .....||.+|+|||++....-+.+.||||+||++|..++| ..||......         -..++.....-....
T Consensus       666 sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R---------~~NIl~~~~~L~~L~  736 (903)
T KOG1027|consen  666 SSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLER---------QANILTGNYTLVHLE  736 (903)
T ss_pred             chhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHh---------hhhhhcCccceeeec
Confidence            33   3456799999999999988888899999999999999985 8999743211         011111111100000


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...++  ...+|+.+|++.||..||++.+|+.|
T Consensus       737 ~~~d~--eA~dLI~~ml~~dP~~RPsa~~VL~H  767 (903)
T KOG1027|consen  737 PLPDC--EAKDLISRMLNPDPQLRPSATDVLNH  767 (903)
T ss_pred             cCchH--HHHHHHHHhcCCCcccCCCHHHHhCC
Confidence            11111  47899999999999999999999865

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.96  E-value=2.1e-29  Score=230.37  Aligned_cols=217  Identities=26%  Similarity=0.330  Sum_probs=166.8

Q ss_pred             CceEEEEEEeC-CCcEEEEEeccCCcc----------------------ccceEEEecCceEEEEEEeccCCceeeeecc
Q 042435          155 GYDSVYKAELP-DGKVVALKKLHHSET----------------------EDSAFVVYSPQCMFFIYEYMERGSLFCVLRD  211 (412)
Q Consensus       155 ~~g~Vy~~~~~-~~~~vAvK~l~~~~~----------------------~~~~~~~~~~~~~~lv~ey~~~gsL~~~l~~  211 (412)
                      +||.||+|... +|+.+|+|.+.....                      ......+......++++||+++++|.+++..
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            58999999886 489999998764432                      2222235556789999999999999998865


Q ss_pred             CcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCccccccccccc
Q 042435          212 DDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI  291 (412)
Q Consensus       212 ~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~  291 (412)
                      ..   .+++..+..++.+++.++.|||+.   +++|+||+|+||++++++.++++|||.+....... ......++..|+
T Consensus        81 ~~---~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~~  153 (244)
T smart00220       81 RG---RLSEDEARFYARQILSALEYLHSN---GIIHRDLKPENILLDEDGHVKLADFGLARQLDPGG-LLTTFVGTPEYM  153 (244)
T ss_pred             cc---CCCHHHHHHHHHHHHHHHHHHHHc---CeecCCcCHHHeEECCCCcEEEccccceeeecccc-ccccccCCcCCC
Confidence            43   288999999999999999999998   99999999999999999999999999998765432 223446788999


Q ss_pred             ccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcC
Q 042435          292 ALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACL  371 (412)
Q Consensus       292 aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl  371 (412)
                      +||......++.++||||||++++++++|..||...       .......+.......... .........+.+++.+||
T Consensus       154 ~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l  225 (244)
T smart00220      154 APEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGD-------DQLLELFKKIGKPKPPFP-PPEWKISPEAKDLIRKLL  225 (244)
T ss_pred             CHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC-------CcHHHHHHHHhccCCCCc-cccccCCHHHHHHHHHHc
Confidence            999998888899999999999999999999998631       111122222222211111 100002234888999999


Q ss_pred             cCCCCCCCCHHHHHH
Q 042435          372 RSKPKSRPTMQRISQ  386 (412)
Q Consensus       372 ~~dP~~RPs~~evl~  386 (412)
                      ..+|++||++.++++
T Consensus       226 ~~~p~~Rp~~~~~~~  240 (244)
T smart00220      226 VKDPEKRLTAEEALQ  240 (244)
T ss_pred             cCCchhccCHHHHhh
Confidence            999999999999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.96  E-value=4.9e-30  Score=218.82  Aligned_cols=182  Identities=25%  Similarity=0.322  Sum_probs=142.0

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEeccC-----------------------CccccceEEEecCceEEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHH-----------------------SETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~-----------------------~~~~~~~~~~~~~~~~~lv  196 (412)
                      ..++......||+|++|.|=+-++ .+|+..|+|+++.                       +..+.+.+........++.
T Consensus        44 ~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIc  123 (282)
T KOG0984|consen   44 PADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWIC  123 (282)
T ss_pred             chhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEe
Confidence            334445567799999999988866 5799999998743                       2222233334566778999


Q ss_pred             EEeccCCceeeeeccC-cccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          197 YEYMERGSLFCVLRDD-DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||.|.- ||..+.++- ..+..++....-+|+..+.+||.|||++-  .++|||+||+|||++.++++|+||||++..+.
T Consensus       124 ME~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL--~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~  200 (282)
T KOG0984|consen  124 MELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKL--SVIHRDVKPSNILINYDGQVKICDFGISGYLV  200 (282)
T ss_pred             HHHhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHh--hhhhccCCcceEEEccCCcEEEcccccceeeh
Confidence            999954 776655432 12235778888899999999999999874  89999999999999999999999999998765


Q ss_pred             CCCCCccccccccccccccccc----CcccCcccccHHHHHHHHHHHhCCCCccc
Q 042435          276 VDSSNRTLQAGTYGYIALELVY----TMVVTEKCVIYSFGVVALEVLMGTHPGEL  326 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~----~~~~s~ksDv~S~Gvil~elltg~~P~~~  326 (412)
                      .+- ..+...|.-.|||||.+.    ...|+.||||||+|+.+.||.+++.||+.
T Consensus       201 dSi-Akt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~  254 (282)
T KOG0984|consen  201 DSI-AKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYES  254 (282)
T ss_pred             hhh-HHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccc
Confidence            332 233456888999999875    34689999999999999999999999873

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=7.7e-29  Score=240.91  Aligned_cols=186  Identities=23%  Similarity=0.324  Sum_probs=149.2

Q ss_pred             HHHHHHhh---cCcccceeeeecCceEEEEEEe-CCCcEEEEEeccCC------------------------ccccceEE
Q 042435          135 YENLIDAT---EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHHS------------------------ETEDSAFV  186 (412)
Q Consensus       135 ~~~l~~~~---~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~~------------------------~~~~~~~~  186 (412)
                      |--|+++.   .-|...+-||-|+||+|.++.. ++...+|+|.|+..                        -+++....
T Consensus       618 YiRLkRaKMdKSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyyS  697 (1034)
T KOG0608|consen  618 YIRLKRAKMDKSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYS  697 (1034)
T ss_pred             HHHHHHhhccccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEE
Confidence            34444443   3477788999999999999954 55778899977532                        22334445


Q ss_pred             EecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEe
Q 042435          187 VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVA  266 (412)
Q Consensus       187 ~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~  266 (412)
                      +.+++++|+||||++||++-.+|-..+   -+.+.....++.++..|+++.|..   |+|||||||+|||||.+|.+||+
T Consensus       698 FQDkdnLYFVMdYIPGGDmMSLLIrmg---IFeE~LARFYIAEltcAiesVHkm---GFIHRDiKPDNILIDrdGHIKLT  771 (1034)
T KOG0608|consen  698 FQDKDNLYFVMDYIPGGDMMSLLIRMG---IFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLT  771 (1034)
T ss_pred             eccCCceEEEEeccCCccHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHHHhc---cceecccCccceEEccCCceeee
Confidence            788999999999999999988876554   366777777888999999999999   99999999999999999999999


Q ss_pred             ecCCccccC---------CCCC---------------------------------CcccccccccccccccccCcccCcc
Q 042435          267 DFGTVRLLD---------VDSS---------------------------------NRTLQAGTYGYIALELVYTMVVTEK  304 (412)
Q Consensus       267 DfGla~~~~---------~~~~---------------------------------~~~~~~gt~~y~aPE~~~~~~~s~k  304 (412)
                      |||++.-+.         .+..                                 .....+||+.|+|||++....++.-
T Consensus       772 DFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~  851 (1034)
T KOG0608|consen  772 DFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQL  851 (1034)
T ss_pred             eccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCcccc
Confidence            999975321         0000                                 0012469999999999999999999


Q ss_pred             cccHHHHHHHHHHHhCCCCccc
Q 042435          305 CVIYSFGVVALEVLMGTHPGEL  326 (412)
Q Consensus       305 sDv~S~Gvil~elltg~~P~~~  326 (412)
                      +|.||.|||||||+.|+.||..
T Consensus       852 cdwws~gvil~em~~g~~pf~~  873 (1034)
T KOG0608|consen  852 CDWWSVGVILYEMLVGQPPFLA  873 (1034)
T ss_pred             chhhHhhHHHHHHhhCCCCccC
Confidence            9999999999999999999963

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.95  E-value=1e-28  Score=241.67  Aligned_cols=234  Identities=24%  Similarity=0.330  Sum_probs=183.8

Q ss_pred             HhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc---------------------CCccccceEEEecCceEEEEE
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH---------------------HSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~---------------------~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      +..++|+....+|+|+||.|||++. ..++..|+|.++                     |+|+....+.+...+..++.|
T Consensus        12 nP~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicM   91 (829)
T KOG0576|consen   12 NPQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICM   91 (829)
T ss_pred             CCccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEE
Confidence            4557899999999999999999976 568889988764                     455555555556677889999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      |||.+|+|.+..+...   .++..++..+.+...+||+|||+.   +-+|||||-.|||+++.+.+|++|||.+..+...
T Consensus        92 EycgggslQdiy~~Tg---plselqiayvcRetl~gl~ylhs~---gk~hRdiKGanilltd~gDvklaDfgvsaqitat  165 (829)
T KOG0576|consen   92 EYCGGGSLQDIYHVTG---PLSELQIAYVCRETLQGLKYLHSQ---GKIHRDIKGANILLTDEGDVKLADFGVSAQITAT  165 (829)
T ss_pred             EecCCCcccceeeecc---cchhHHHHHHHhhhhccchhhhcC---CcccccccccceeecccCceeecccCchhhhhhh
Confidence            9999999999888665   688889999999999999999998   8899999999999999999999999999887766


Q ss_pred             CCCccccccccccccccccc---CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          278 SSNRTLQAGTYGYIALELVY---TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~---~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      ...+....||+.|||||+..   .+.|..++|||+.|+...|+-.-+.|....       .+...+.-.-.....++...
T Consensus       166 i~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdl-------hpmr~l~LmTkS~~qpp~lk  238 (829)
T KOG0576|consen  166 IAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDL-------HPMRALFLMTKSGFQPPTLK  238 (829)
T ss_pred             hhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCccccc-------chHHHHHHhhccCCCCCccc
Confidence            66667789999999999874   466889999999999999998777663211       11111111112222333223


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHH
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQ  386 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  386 (412)
                      +.......+.+++..|+.++|++||+++.++.
T Consensus       239 Dk~kws~~fh~fvK~altknpKkRptaeklL~  270 (829)
T KOG0576|consen  239 DKTKWSEFFHNFVKGALTKNPKKRPTAEKLLQ  270 (829)
T ss_pred             CCccchHHHHHHHHHHhcCCCccCCChhhhee
Confidence            33334445889999999999999999987654

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=3.1e-29  Score=222.13  Aligned_cols=239  Identities=24%  Similarity=0.240  Sum_probs=167.3

Q ss_pred             cccceeeeecCceEEEEEEe-CCCcEEEEEeccC-----------------------CccccceEEEec-----CceEEE
Q 042435          145 FHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHH-----------------------SETEDSAFVVYS-----PQCMFF  195 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~-----------------------~~~~~~~~~~~~-----~~~~~l  195 (412)
                      .+..+-||-|+||.||.+.. ++|+.||+|++.+                       .|......+..-     -+++|+
T Consensus        55 i~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV  134 (449)
T KOG0664|consen   55 IQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYV  134 (449)
T ss_pred             CCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHH
Confidence            34457899999999999966 5799999998743                       332222222111     135678


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ++|.|.. +|.+++-...   .++-..+.-+.+||++||.|||+.   +|.||||||.|.|+++|...||||||+++..+
T Consensus       135 ~TELmQS-DLHKIIVSPQ---~Ls~DHvKVFlYQILRGLKYLHsA---~ILHRDIKPGNLLVNSNCvLKICDFGLARvee  207 (449)
T KOG0664|consen  135 LTELMQS-DLHKIIVSPQ---ALTPDHVKVFVYQILRGLKYLHTA---NILHRDIKPGNLLVNSNCILKICDFGLARTWD  207 (449)
T ss_pred             HHHHHHh-hhhheeccCC---CCCcchhhhhHHHHHhhhHHHhhc---chhhccCCCccEEeccCceEEecccccccccc
Confidence            8999954 8988886544   577778888999999999999998   99999999999999999999999999999765


Q ss_pred             CCC-CCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcc-------
Q 042435          276 VDS-SNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKI-------  338 (412)
Q Consensus       276 ~~~-~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~-------  338 (412)
                      .+. .+.+...-|..|.|||++.+. .|+.+.||||.|||+.|++.++.-|+....+..        .....+       
T Consensus       208 ~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACE  287 (449)
T KOG0664|consen  208 QRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACE  287 (449)
T ss_pred             hhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhh
Confidence            443 334556678899999999875 599999999999999999988877763211100        000000       


Q ss_pred             -hhhHHhhhccCCccchh------hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          339 -MLIDILYQRLSPPINQK------IIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       339 -~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                       .-..++.....++..+.      ..........+...++..||++|.+..+.+.++..
T Consensus       288 GAk~H~LR~~~k~Ps~~vLYtlsS~~~~~heav~~~~~~l~~d~dkris~~~A~~~~~~  346 (449)
T KOG0664|consen  288 GAKNHVLRAGLRAPDTQRLYKIASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQHRYL  346 (449)
T ss_pred             hhHHHhhccCCCCCCccceeeecCCcccchHHHHHHHHHhCCCCcccccHhhhcccccc
Confidence             01111222222211000      00111124567778899999999999998887643

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.95  E-value=1.3e-27  Score=209.40  Aligned_cols=165  Identities=21%  Similarity=0.135  Sum_probs=124.6

Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|.++++...  ..++|.++..++.|+++||+|||++   +      ||+||+++.++.+|+  ||+++......    
T Consensus         1 GsL~~~l~~~~--~~l~~~~~~~i~~qi~~~L~~lH~~---~------kp~Nil~~~~~~~~~--fG~~~~~~~~~----   63 (176)
T smart00750        1 VSLADILEVRG--RPLNEEEIWAVCLQCLRALRELHRQ---A------KSGNILLTWDGLLKL--DGSVAFKTPEQ----   63 (176)
T ss_pred             CcHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhc---C------CcccEeEcCccceee--ccceEeecccc----
Confidence            67888887533  2599999999999999999999988   4      999999999999999  99988654322    


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCC--ccchhhHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP--PINQKIIQDI  360 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  360 (412)
                       ..||+.|+|||++.+..++.++|||||||++|||+||+.||......      ..............  ..........
T Consensus        64 -~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (176)
T smart00750       64 -SRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEEREL------SAILEILLNGMPADDPRDRSNLESVS  136 (176)
T ss_pred             -CCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchh------cHHHHHHHHHhccCCccccccHHHHH
Confidence             26889999999999999999999999999999999999998632111      11111222111111  0000111111


Q ss_pred             --HHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          361 --ILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       361 --~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                        ..+.+++.+||+.||++||++.|+++++...
T Consensus       137 ~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~  169 (176)
T smart00750      137 AARSFADFMRVCASRLPQRREAANHYLAHCRAL  169 (176)
T ss_pred             hhhhHHHHHHHHHhcccccccCHHHHHHHHHHH
Confidence              2488999999999999999999999998655

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.94  E-value=5.1e-28  Score=230.72  Aligned_cols=245  Identities=18%  Similarity=0.199  Sum_probs=181.7

Q ss_pred             ccHHHHHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEeccCCccccceEE-------------------------
Q 042435          133 ILYENLIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHHSETEDSAFV-------------------------  186 (412)
Q Consensus       133 ~~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~~~~~~~~~~-------------------------  186 (412)
                      +.+.|+.+  +.|.+....|+|-|++|.+|.. ..|..||||.++...+....+.                         
T Consensus       424 v~igE~LD--~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r  501 (752)
T KOG0670|consen  424 VRIGELLD--SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFR  501 (752)
T ss_pred             Eehhhhhc--ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHH
Confidence            34455543  5688889999999999999966 4588999999976654433221                         


Q ss_pred             -EecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC-CcEE
Q 042435          187 -VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN-LEAF  264 (412)
Q Consensus       187 -~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~-~~~k  264 (412)
                       +...+++|||+|-+. -+|.++|...+....|....+..++.|+.-||..|-..   +|+|.||||.|||+++. ..+|
T Consensus       502 ~F~hknHLClVFE~Ls-lNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c---~vlHaDIKPDNiLVNE~k~iLK  577 (752)
T KOG0670|consen  502 HFKHKNHLCLVFEPLS-LNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKC---GVLHADIKPDNILVNESKNILK  577 (752)
T ss_pred             HhhhcceeEEEehhhh-chHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhc---CeeecccCccceEeccCcceee
Confidence             556789999999884 58999998877666788899999999999999999987   99999999999999854 6789


Q ss_pred             EeecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccc----------------
Q 042435          265 VADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLL----------------  328 (412)
Q Consensus       265 l~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~----------------  328 (412)
                      |||||.|.....+..  +...-+..|.|||++.+-+|+...|+||.||+||||.||+.-|..-.                
T Consensus       578 LCDfGSA~~~~enei--tPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~MLrl~me~KGk~p  655 (752)
T KOG0670|consen  578 LCDFGSASFASENEI--TPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQMLRLFMELKGKFP  655 (752)
T ss_pred             eccCccccccccccc--cHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHHHHHHHHHhcCCCc
Confidence            999999987654322  22334568999999999999999999999999999999986653100                


Q ss_pred             ------------cc--------------c--------cCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCC
Q 042435          329 ------------SL--------------S--------SSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSK  374 (412)
Q Consensus       329 ------------~~--------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~d  374 (412)
                                  .+              .        ....+...+...+...  +..+.........+.+|+..|+..|
T Consensus       656 ~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~--q~~~deq~~~~~~~rdLLdkml~Ld  733 (752)
T KOG0670|consen  656 NKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAV--QRLPDEQPKIVQQLRDLLDKMLILD  733 (752)
T ss_pred             HHHhhhcchhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHhcc--CCCCchhHHHHHHHHHHHHHHhccC
Confidence                        00              0        0000000111111110  1112333445567999999999999


Q ss_pred             CCCCCCHHHHHHH
Q 042435          375 PKSRPTMQRISQE  387 (412)
Q Consensus       375 P~~RPs~~evl~~  387 (412)
                      |++|.|..+.++|
T Consensus       734 P~KRit~nqAL~H  746 (752)
T KOG0670|consen  734 PEKRITVNQALKH  746 (752)
T ss_pred             hhhcCCHHHHhcC
Confidence            9999999998875

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=1.7e-27  Score=225.98  Aligned_cols=113  Identities=24%  Similarity=0.429  Sum_probs=89.2

Q ss_pred             hcCcccceeeeecCceEEEEEE-eCCCcEEEEEeccCC----------------------ccccceEE----------Ee
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHS----------------------ETEDSAFV----------VY  188 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~-~~~~~~vAvK~l~~~----------------------~~~~~~~~----------~~  188 (412)
                      ..+|.+.++||-|.|++||++. ..+.+.||+|+.+..                      +......+          ..
T Consensus        77 ~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGp  156 (590)
T KOG1290|consen   77 GGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGP  156 (590)
T ss_pred             CceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCC
Confidence            3679999999999999999994 467889999976421                      11111111          23


Q ss_pred             cCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec
Q 042435          189 SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN  258 (412)
Q Consensus       189 ~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~  258 (412)
                      .+.++++|+|++ |-+|..++...... .++...+.+|++||+.||.|||..|  +|+|-||||+|||+.
T Consensus       157 NG~HVCMVfEvL-GdnLLklI~~s~Yr-Glpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl~  222 (590)
T KOG1290|consen  157 NGQHVCMVFEVL-GDNLLKLIKYSNYR-GLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLLC  222 (590)
T ss_pred             CCcEEEEEehhh-hhHHHHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeeee
Confidence            467899999999 66888887654322 4888999999999999999999998  999999999999993

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.94  E-value=5.6e-28  Score=258.69  Aligned_cols=179  Identities=17%  Similarity=0.203  Sum_probs=130.4

Q ss_pred             CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC----------
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS----------  259 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~----------  259 (412)
                      ...++.++||+ +++|.+++....  ..+++.+++.++.||++||+|||++   +|+||||||+|||++.          
T Consensus        52 ~~~~~~~~e~~-~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---gIvHrDlKP~NiLl~~~~~~k~~d~~  125 (793)
T PLN00181         52 DDSIVRALECE-DVSLRQWLDNPD--RSVDAFECFHVFRQIVEIVNAAHSQ---GIVVHNVRPSCFVMSSFNHVSFIESA  125 (793)
T ss_pred             cchhhhhhccC-CccHHHHHhccc--ccccHHHHHHHHHHHHHHHHHHHhC---CeeeccCCchhEEEcccCcEEEeecc
Confidence            34678889988 569999997543  2489999999999999999999998   9999999999999954          


Q ss_pred             ---------CCcEEEeecCCccccCCCC----------------CCcccccccccccccccccCcccCcccccHHHHHHH
Q 042435          260 ---------NLEAFVADFGTVRLLDVDS----------------SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVA  314 (412)
Q Consensus       260 ---------~~~~kl~DfGla~~~~~~~----------------~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil  314 (412)
                               ++.+|++|||+++......                .......||+.|||||++.+..++.++|||||||+|
T Consensus       126 ~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL  205 (793)
T PLN00181        126 SCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLL  205 (793)
T ss_pred             ccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHH
Confidence                     4556677777765421100                001123578899999999999999999999999999


Q ss_pred             HHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          315 LEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       315 ~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      |||++|..|+....         ..+........++.    ..........++.+||+.||.+||+|.|++++
T Consensus       206 ~ELl~~~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~L~~~P~~Rps~~eil~h  265 (793)
T PLN00181        206 FELFCPVSSREEKS---------RTMSSLRHRVLPPQ----ILLNWPKEASFCLWLLHPEPSCRPSMSELLQS  265 (793)
T ss_pred             HHHhhCCCchhhHH---------HHHHHHHHhhcChh----hhhcCHHHHHHHHHhCCCChhhCcChHHHhhc
Confidence            99999988865211         11111111111111    11112235678889999999999999999875

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.94  E-value=3e-26  Score=204.29  Aligned_cols=190  Identities=32%  Similarity=0.515  Sum_probs=157.7

Q ss_pred             eeecCceEEEEEEeCC-CcEEEEEeccCCccc----------------------cceEEEecCceEEEEEEeccCCceee
Q 042435          151 IGTGGYDSVYKAELPD-GKVVALKKLHHSETE----------------------DSAFVVYSPQCMFFIYEYMERGSLFC  207 (412)
Q Consensus       151 lG~G~~g~Vy~~~~~~-~~~vAvK~l~~~~~~----------------------~~~~~~~~~~~~~lv~ey~~~gsL~~  207 (412)
                      ||+|++|.||++...+ ++.+++|.+......                      ............++++||+++++|.+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            6899999999998854 899999987655431                      12223445578899999999999999


Q ss_pred             eeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC-CCcEEEeecCCccccCCCCCCcccccc
Q 042435          208 VLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS-NLEAFVADFGTVRLLDVDSSNRTLQAG  286 (412)
Q Consensus       208 ~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~-~~~~kl~DfGla~~~~~~~~~~~~~~g  286 (412)
                      ++....  ..+++..+..++.++++++++||+.   +++|+||+|.||+++. +..++|+|||.+..............+
T Consensus        81 ~~~~~~--~~~~~~~~~~~~~~l~~~l~~lh~~---~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~  155 (215)
T cd00180          81 LLKENE--GKLSEDEILRILLQILEGLEYLHSN---GIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVG  155 (215)
T ss_pred             HHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhhcccC
Confidence            887542  2488999999999999999999998   9999999999999998 899999999999865443322333457


Q ss_pred             cccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHH
Q 042435          287 TYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVST  365 (412)
Q Consensus       287 t~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (412)
                      ...|++||..... ..+.++|+|++|++++++                                           ..+.+
T Consensus       156 ~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l-------------------------------------------~~~~~  192 (215)
T cd00180         156 TPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL-------------------------------------------PELKD  192 (215)
T ss_pred             CCCccChhHhcccCCCCchhhhHHHHHHHHHH-------------------------------------------HHHHH
Confidence            8899999998877 788999999999999998                                           23778


Q ss_pred             HHHhcCcCCCCCCCCHHHHHHHH
Q 042435          366 IALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       366 l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      ++..|++.||++||++.++++++
T Consensus       193 ~l~~~l~~~p~~R~~~~~l~~~~  215 (215)
T cd00180         193 LIRKMLQKDPEKRPSAKEILEHL  215 (215)
T ss_pred             HHHHHhhCCcccCcCHHHHhhCC
Confidence            89999999999999999998753

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.94  E-value=4.2e-27  Score=208.50  Aligned_cols=231  Identities=20%  Similarity=0.299  Sum_probs=162.9

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEeccCCcccc---------------------ceE-EEecCceEEEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHHSETED---------------------SAF-VVYSPQCMFFIY  197 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~~~~~~---------------------~~~-~~~~~~~~~lv~  197 (412)
                      ..+.|.+.+.+|+|.||.+-.++++ ..+.+++|.+..+....                     ... .+.+.+..+.++
T Consensus        22 l~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~q  101 (378)
T KOG1345|consen   22 LEDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQ  101 (378)
T ss_pred             hhhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEee
Confidence            3456889999999999999999875 57789999775443221                     111 155667888999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec--CCCcEEEeecCCccccC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN--SNLEAFVADFGTVRLLD  275 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~--~~~~~kl~DfGla~~~~  275 (412)
                      ||+|.|+|.+-+...+    +......+++.|+++|+.|+|++   ++||||||.+|||+-  +...+|+||||..+...
T Consensus       102 E~aP~gdL~snv~~~G----igE~~~K~v~~ql~SAi~fMHsk---nlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g  174 (378)
T KOG1345|consen  102 EFAPRGDLRSNVEAAG----IGEANTKKVFAQLLSAIEFMHSK---NLVHRDLKAENILIFDADFYRVKLCDFGLTRKVG  174 (378)
T ss_pred             ccCccchhhhhcCccc----ccHHHHHHHHHHHHHHHHHhhcc---chhhcccccceEEEecCCccEEEeeecccccccC
Confidence            9999999998776643    77778889999999999999999   999999999999993  45689999999987543


Q ss_pred             CCCCCcccccccccccccccccC-----cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCC
Q 042435          276 VDSSNRTLQAGTYGYIALELVYT-----MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP  350 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~-----~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (412)
                      ...   ....-+..|.+||....     -...+.+|+|.||++++.++||..||+......   .+-.....+. ++..+
T Consensus       175 ~tV---~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d---~~Y~~~~~w~-~rk~~  247 (378)
T KOG1345|consen  175 TTV---KYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMD---KPYWEWEQWL-KRKNP  247 (378)
T ss_pred             cee---hhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccC---chHHHHHHHh-cccCc
Confidence            221   11223456889987653     235678999999999999999999998322111   1111122222 22222


Q ss_pred             ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHH
Q 042435          351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRIS  385 (412)
Q Consensus       351 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl  385 (412)
                      ..+.........+.++..+-+..+|++|=...++.
T Consensus       248 ~~P~~F~~fs~~a~r~Fkk~lt~~~~drcki~~~k  282 (378)
T KOG1345|consen  248 ALPKKFNPFSEKALRLFKKSLTPRFKDRCKIWTAK  282 (378)
T ss_pred             cCchhhcccCHHHHHHHHHhcCCcccccchhHHHH
Confidence            22222223334467778888999999984444443

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.93  E-value=5.8e-27  Score=212.10  Aligned_cols=234  Identities=24%  Similarity=0.248  Sum_probs=163.2

Q ss_pred             CcccceeeeecCceEEEEEE-eCCCcEEEEEeccCC-----------------------ccccceEEEe------cCceE
Q 042435          144 YFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHS-----------------------ETEDSAFVVY------SPQCM  193 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~-~~~~~~vAvK~l~~~-----------------------~~~~~~~~~~------~~~~~  193 (412)
                      +|.-...+|.|.- .|..+. .-.++.||+|++..+                       |+.....++.      .-...
T Consensus        18 Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~   96 (369)
T KOG0665|consen   18 RYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEV   96 (369)
T ss_pred             eeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhH
Confidence            4555567888887 555553 346889999987543                       2222211111      12356


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      |+|||||. ++|.+.+..     .++-.+...|..|++.|+.|||+.   +|+||||||+||++..+..+||.|||+|+.
T Consensus        97 y~v~e~m~-~nl~~vi~~-----elDH~tis~i~yq~~~~ik~lhs~---~IihRdLkPsnivv~~~~~lKi~dfg~ar~  167 (369)
T KOG0665|consen   97 YLVMELMD-ANLCQVILM-----ELDHETISYILYQMLCGIKHLHSA---GIIHRDLKPSNIVVNSDCTLKILDFGLART  167 (369)
T ss_pred             HHHHHhhh-hHHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHhc---ceeecccCcccceecchhheeeccchhhcc
Confidence            99999995 588887762     477788889999999999999999   999999999999999999999999999986


Q ss_pred             cCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccccc-------ccCCCCcchhhH----
Q 042435          274 LDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSL-------SSSSGPKIMLID----  342 (412)
Q Consensus       274 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~-------~~~~~~~~~~~~----  342 (412)
                      -... -..+....|..|.|||++.+..+.+..||||.||++.||++|+.-|.....+       .....+.....+    
T Consensus       168 e~~~-~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~  246 (369)
T KOG0665|consen  168 EDTD-FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQP  246 (369)
T ss_pred             cCcc-cccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhH
Confidence            4433 2345567889999999999988999999999999999999998766421100       000001111100    


Q ss_pred             -------------------HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          343 -------------------ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       343 -------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                                         .+....-+............+.+++.+||-.||++|.+++++++|=
T Consensus       247 ~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~HP  311 (369)
T KOG0665|consen  247 TVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRHP  311 (369)
T ss_pred             HHHHHhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcCC
Confidence                               0000000000111112233478899999999999999999999873

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=1.2e-26  Score=201.08  Aligned_cols=237  Identities=16%  Similarity=0.185  Sum_probs=171.8

Q ss_pred             hhcCcccceeeeecCceEEEEEE-eCCCcEEEEEecc-------------------CCccccceEEEecC--ceEEEEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLH-------------------HSETEDSAFVVYSP--QCMFFIYE  198 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~-~~~~~~vAvK~l~-------------------~~~~~~~~~~~~~~--~~~~lv~e  198 (412)
                      ..++|++.+++|+|.+++||.|. ..+++.++||.++                   ++|+.....+..++  ....||+|
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE  115 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFE  115 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHHHHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhh
Confidence            34679999999999999999995 4678899999774                   45555555555443  45689999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC-CCcEEEeecCCccccCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS-NLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~-~~~~kl~DfGla~~~~~~  277 (412)
                      |..+.+...+..      .++...+..++.++++||.|+|+.   ||+|||+||.|+++|. .-+.+|+|+|+|.+..+.
T Consensus       116 ~v~n~Dfk~ly~------tl~d~dIryY~~elLkALdyCHS~---GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~  186 (338)
T KOG0668|consen  116 YVNNTDFKQLYP------TLTDYDIRYYIYELLKALDYCHSM---GIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPG  186 (338)
T ss_pred             hhccccHHHHhh------hhchhhHHHHHHHHHHHHhHHHhc---CcccccCCcceeeechhhceeeeeecchHhhcCCC
Confidence            999887765543      477788889999999999999999   9999999999999984 567999999999988765


Q ss_pred             CCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccc-------ccCC--------------C
Q 042435          278 SSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSL-------SSSS--------------G  335 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~-------~~~~--------------~  335 (412)
                      .... ....+..|.-||.+.. ..|+..-|+|||||++..|+..+.||-...+-       +.-.              .
T Consensus       187 ~eYn-VRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~  265 (338)
T KOG0668|consen  187 KEYN-VRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQID  265 (338)
T ss_pred             ceee-eeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccC
Confidence            4432 3356778899998865 45888999999999999999999998421100       0000              0


Q ss_pred             CcchhhHHhhhccCCccchh-----hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          336 PKIMLIDILYQRLSPPINQK-----IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      -.....+++....+.+....     ..-....+.+++.+.+..|..+|||+.|.+.+
T Consensus       266 Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~H  322 (338)
T KOG0668|consen  266 LDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAH  322 (338)
T ss_pred             CChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchHHHhcC
Confidence            00111222222111111100     00112347889999999999999999998765

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.93  E-value=6.3e-25  Score=198.88  Aligned_cols=176  Identities=31%  Similarity=0.442  Sum_probs=145.9

Q ss_pred             cccceeeeecCceEEEEEEeCC-CcEEEEEeccCCc----------------------cccceEEEecCceEEEEEEecc
Q 042435          145 FHIRYCIGTGGYDSVYKAELPD-GKVVALKKLHHSE----------------------TEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~~-~~~vAvK~l~~~~----------------------~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      |++.+.||+|++|.||++...+ ++.+|+|.+....                      +......+......++++||++
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCE   80 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccC
Confidence            5667899999999999998865 8999999875432                      2222333555678899999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC-CC
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS-SN  280 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~-~~  280 (412)
                      +++|.+++.....  .+++.....++.+++.++.|||+.   +++|+|++|+||+++.++.++|+|||.+....... ..
T Consensus        81 ~~~L~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~  155 (225)
T smart00221       81 GGDLFDYLRKKGG--KLSEEEARFYLRQILEALEYLHSL---GIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAAL  155 (225)
T ss_pred             CCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeCceeeEecCccccc
Confidence            9999998876542  178999999999999999999998   99999999999999999999999999988765432 12


Q ss_pred             cccccccccccccccc-cCcccCcccccHHHHHHHHHHHhCCCCcc
Q 042435          281 RTLQAGTYGYIALELV-YTMVVTEKCVIYSFGVVALEVLMGTHPGE  325 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~-~~~~~s~ksDv~S~Gvil~elltg~~P~~  325 (412)
                      .....++..|++||.. ....++.++|+||||++++||++|+.||.
T Consensus       156 ~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~  201 (225)
T smart00221      156 LKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFS  201 (225)
T ss_pred             ccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCcc
Confidence            2334677889999998 66778889999999999999999999986

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.92  E-value=4.9e-26  Score=213.18  Aligned_cols=181  Identities=27%  Similarity=0.362  Sum_probs=142.9

Q ss_pred             HHHHHhhcCcccceeeeecCceEEEEEEeC----CCcEEEEEeccCC--------------------ccccceEEEecCc
Q 042435          136 ENLIDATEYFHIRYCIGTGGYDSVYKAELP----DGKVVALKKLHHS--------------------ETEDSAFVVYSPQ  191 (412)
Q Consensus       136 ~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~----~~~~vAvK~l~~~--------------------~~~~~~~~~~~~~  191 (412)
                      +++....+.|...++||+|.|++||++...    ..+.||+|.+...                    ++.........++
T Consensus        29 q~~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd  108 (418)
T KOG1167|consen   29 QDIPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLYRLGGSDNIIKLNGCFRNND  108 (418)
T ss_pred             hhhhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHHHhccchhhhcchhhhccCC
Confidence            345556678999999999999999999653    4778999987432                    2222223355678


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC-CCcEEEeecCC
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS-NLEAFVADFGT  270 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~-~~~~kl~DfGl  270 (412)
                      ...+|+||++.-+..+++.      .++...+..++..+..||+++|++   ||||||+||+|+|.+. .+.-.|.|||+
T Consensus       109 ~v~ivlp~~~H~~f~~l~~------~l~~~~i~~Yl~~ll~Al~~~h~~---GIvHRDiKpsNFL~n~~t~rg~LvDFgL  179 (418)
T KOG1167|consen  109 QVAIVLPYFEHDRFRDLYR------SLSLAEIRWYLRNLLKALAHLHKN---GIVHRDIKPSNFLYNRRTQRGVLVDFGL  179 (418)
T ss_pred             eeEEEecccCccCHHHHHh------cCCHHHHHHHHHHHHHHhhhhhcc---CccccCCCccccccccccCCceEEechh
Confidence            8999999999988877775      377888999999999999999999   9999999999999984 46678999999


Q ss_pred             ccccC-----------------C--CC-------------------------CCcccccccccccccccccC-cccCccc
Q 042435          271 VRLLD-----------------V--DS-------------------------SNRTLQAGTYGYIALELVYT-MVVTEKC  305 (412)
Q Consensus       271 a~~~~-----------------~--~~-------------------------~~~~~~~gt~~y~aPE~~~~-~~~s~ks  305 (412)
                      |...+                 .  ..                         .......||++|.|||++.. ...+++.
T Consensus       180 A~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~Qttai  259 (418)
T KOG1167|consen  180 AQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAI  259 (418)
T ss_pred             HHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCcc
Confidence            87221                 0  00                         00112369999999999875 4578899


Q ss_pred             ccHHHHHHHHHHHhCCCCcc
Q 042435          306 VIYSFGVVALEVLMGTHPGE  325 (412)
Q Consensus       306 Dv~S~Gvil~elltg~~P~~  325 (412)
                      ||||.|||++-+++++.||-
T Consensus       260 Diws~GVI~Lslls~~~PFf  279 (418)
T KOG1167|consen  260 DIWSAGVILLSLLSRRYPFF  279 (418)
T ss_pred             ceeeccceeehhhccccccc
Confidence            99999999999999999984

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.91  E-value=4.1e-25  Score=213.38  Aligned_cols=175  Identities=21%  Similarity=0.244  Sum_probs=150.3

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec--------------------------------cCCccccceEEEec
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL--------------------------------HHSETEDSAFVVYS  189 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l--------------------------------~~~~~~~~~~~~~~  189 (412)
                      .+|...+.+|+|+||.|+.|.++ +...|+||.+                                .|+|+.+....+.+
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            35888899999999999999775 4678889954                                26777777778889


Q ss_pred             CceEEEEEEecc-CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeec
Q 042435          190 PQCMFFIYEYME-RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADF  268 (412)
Q Consensus       190 ~~~~~lv~ey~~-~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~Df  268 (412)
                      ++..||+||--. +-+|++++.-..   .++......|+.||+.|+++||+.   +|||||||-+|+.++.+|-+||+||
T Consensus       641 dd~yyl~te~hg~gIDLFd~IE~kp---~m~E~eAk~IFkQV~agi~hlh~~---~ivhrdikdenvivd~~g~~klidf  714 (772)
T KOG1152|consen  641 DDYYYLETEVHGEGIDLFDFIEFKP---RMDEPEAKLIFKQVVAGIKHLHDQ---GIVHRDIKDENVIVDSNGFVKLIDF  714 (772)
T ss_pred             CCeeEEEecCCCCCcchhhhhhccC---ccchHHHHHHHHHHHhcccccccc---CceecccccccEEEecCCeEEEeec
Confidence            999999999764 558899887654   588999999999999999999999   9999999999999999999999999


Q ss_pred             CCccccCCCCCCcccccccccccccccccCcccC-cccccHHHHHHHHHHHhCCCCcc
Q 042435          269 GTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVT-EKCVIYSFGVVALEVLMGTHPGE  325 (412)
Q Consensus       269 Gla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s-~ksDv~S~Gvil~elltg~~P~~  325 (412)
                      |.+......  ......||..|.|||++.+..|- ...|||++|++||.++....||.
T Consensus       715 gsaa~~ksg--pfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  715 GSAAYTKSG--PFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             cchhhhcCC--CcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            998765432  34557899999999999988875 56999999999999999999875

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.90  E-value=3.5e-24  Score=190.09  Aligned_cols=226  Identities=19%  Similarity=0.269  Sum_probs=174.1

Q ss_pred             ceeeeecCceEEEEEEeCCCcEE----------------------EEEeccCCccccceEEEecCceEEEEEEeccCCce
Q 042435          148 RYCIGTGGYDSVYKAELPDGKVV----------------------ALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSL  205 (412)
Q Consensus       148 ~~~lG~G~~g~Vy~~~~~~~~~v----------------------AvK~l~~~~~~~~~~~~~~~~~~~lv~ey~~~gsL  205 (412)
                      ..+|.+...|+.|+|+|+.+..|                      +++.+.|+|+....+.|..+....++..||+.|+|
T Consensus       195 ~tkl~e~hsgelwrgrwqgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gsl  274 (448)
T KOG0195|consen  195 ITKLAESHSGELWRGRWQGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGSL  274 (448)
T ss_pred             hhhhccCCCcccccccccCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchHH
Confidence            34688899999999999655444                      23456788888888889999999999999999999


Q ss_pred             eeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEe--ecCCccccCCCCCCccc
Q 042435          206 FCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVA--DFGTVRLLDVDSSNRTL  283 (412)
Q Consensus       206 ~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~--DfGla~~~~~~~~~~~~  283 (412)
                      +.+|++...- ..+-.+..+++.++|+|++|||+. .+-|.--.|.+..+++|++.+++|+  |--++-.       ...
T Consensus       275 ynvlhe~t~v-vvd~sqav~faldiargmaflhsl-ep~ipr~~lns~hvmidedltarismad~kfsfq-------e~g  345 (448)
T KOG0195|consen  275 YNVLHEQTSV-VVDHSQAVRFALDIARGMAFLHSL-EPMIPRFYLNSKHVMIDEDLTARISMADTKFSFQ-------EVG  345 (448)
T ss_pred             HHHHhcCccE-EEecchHHHHHHHHHhhHHHHhhc-chhhhhhhcccceEEecchhhhheecccceeeee-------ccc
Confidence            9999987543 477889999999999999999987 4455566799999999999998885  4222211       111


Q ss_pred             ccccccccccccccCcccC---cccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          284 QAGTYGYIALELVYTMVVT---EKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       284 ~~gt~~y~aPE~~~~~~~s---~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ..-++.||+||.++..+.+   .++|+|||++++||+.|+..||....       +.+.-..+..+.++..+++..... 
T Consensus       346 r~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadls-------pmecgmkialeglrv~ippgis~h-  417 (448)
T KOG0195|consen  346 RAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLS-------PMECGMKIALEGLRVHIPPGISRH-  417 (448)
T ss_pred             cccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCC-------chhhhhhhhhccccccCCCCccHH-
Confidence            2346889999999876544   47999999999999999999998432       222234444555555555544443 


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                        +.+++.-|+..||.+||.+..|+-.||++.
T Consensus       418 --m~klm~icmnedpgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  418 --MNKLMNICMNEDPGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             --HHHHHHHHhcCCCCcCCCcceehhhHHHhc
Confidence              667778899999999999999999999864

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.88  E-value=1e-21  Score=188.84  Aligned_cols=238  Identities=19%  Similarity=0.189  Sum_probs=168.3

Q ss_pred             CcccceeeeecCceEEEEEEeCCC--cEEEEEeccCCc-------------------------cccceEEE-ecCceEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAELPDG--KVVALKKLHHSE-------------------------TEDSAFVV-YSPQCMFF  195 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~~~--~~vAvK~l~~~~-------------------------~~~~~~~~-~~~~~~~l  195 (412)
                      +|.+.+.||+|+||.||++.....  ..+|+|......                         ........ ..+...++
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i   98 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI   98 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence            799999999999999999986543  578888643211                         11111112 24567899


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC-----CcEEEeecCC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN-----LEAFVADFGT  270 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~-----~~~kl~DfGl  270 (412)
                      ||+.+ +.+|.++..... ...++..+.+.|+.|++.+|++||+.   |++||||||+|+++...     ..+.+.|||+
T Consensus        99 VM~l~-G~sL~dl~~~~~-~~~fs~~T~l~ia~q~l~~l~~lH~~---G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGl  173 (322)
T KOG1164|consen   99 VMSLL-GPSLEDLRKRNP-PGRFSRKTVLRIAIQNLNALEDLHSK---GFIHRDIKPENFVVGQSSRSEVRTLYLLDFGL  173 (322)
T ss_pred             EEecc-CccHHHHHHhCC-CCCcCHhHHHHHHHHHHHHHHHHHhc---CcccCCcCHHHeeecCCCCcccceEEEEecCC
Confidence            99988 779998775444 34689999999999999999999999   99999999999999754     4689999999


Q ss_pred             cc--ccCCCC--------CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchh
Q 042435          271 VR--LLDVDS--------SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIML  340 (412)
Q Consensus       271 a~--~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~  340 (412)
                      ++  ......        .......||..|+++....+...+.+.|+||++.++.|+..|..||.......    .....
T Consensus       174 ar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~----~~~~~  249 (322)
T KOG1164|consen  174 ARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTD----LKSKF  249 (322)
T ss_pred             CccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccc----hHHHH
Confidence            98  321111        11223459999999999999999999999999999999999999986332110    01111


Q ss_pred             hHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          341 IDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      ..................   .+.++...+-..+..++|....+.+.|+....
T Consensus       250 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~~~  299 (322)
T KOG1164|consen  250 EKDPRKLLTDRFGDLKPE---EFAKILEYIDSLDYEDKPDYEKLAELLKDVFD  299 (322)
T ss_pred             HHHhhhhccccccCCChH---HHHHHHHHhhccCCcCCCCHHHHHHHHHHHHH
Confidence            111111111100011112   24455555666899999999999998866543

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.86  E-value=1.1e-21  Score=192.62  Aligned_cols=214  Identities=24%  Similarity=0.394  Sum_probs=162.4

Q ss_pred             EeccCCccccceEEEecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCc-EEeCCC
Q 042435          173 KKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI-VHRDIS  251 (412)
Q Consensus       173 K~l~~~~~~~~~~~~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~i-vHrDlk  251 (412)
                      |.+.|.|.....+.+.++...+.|.+||..|+|.+.+....  ..++|.-...+.++++.||+|+|+.   +| .|+.++
T Consensus         2 ~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~--~~~d~~F~~s~~rdi~~Gl~ylh~s---~i~~hg~l~   76 (484)
T KOG1023|consen    2 RQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNED--IKLDYFFILSFIRDISKGLAYLHNS---PIGYHGALK   76 (484)
T ss_pred             cccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccc--cCccHHHHHHHHHHHHHHHHHHhcC---cceeeeeec
Confidence            56789999999999999999999999999999999998743  4699999999999999999999976   44 999999


Q ss_pred             CCCEEecCCCcEEEeecCCccccCC--CCCCcccccccccccccccccCc-------ccCcccccHHHHHHHHHHHhCCC
Q 042435          252 SNNILLNSNLEAFVADFGTVRLLDV--DSSNRTLQAGTYGYIALELVYTM-------VVTEKCVIYSFGVVALEVLMGTH  322 (412)
Q Consensus       252 p~NILl~~~~~~kl~DfGla~~~~~--~~~~~~~~~gt~~y~aPE~~~~~-------~~s~ksDv~S~Gvil~elltg~~  322 (412)
                      ++|+++|..+.+|++|||+......  .........-..-|.|||.+...       ..+.++||||||++++|+++.+.
T Consensus        77 s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~  156 (484)
T KOG1023|consen   77 SSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSG  156 (484)
T ss_pred             cccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccC
Confidence            9999999999999999999876642  11111222234579999998753       14678999999999999999999


Q ss_pred             CcccccccccCCCCcchhhHHhhhc---cCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCC
Q 042435          323 PGELLLSLSSSSGPKIMLIDILYQR---LSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMK  395 (412)
Q Consensus       323 P~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  395 (412)
                      ||+......   .+.+.+..+....   ..|...... +....+..++..||..+|++||++++|-..++.+....
T Consensus       157 ~~~~~~~~~---~~~eii~~~~~~~~~~~rP~i~~~~-e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~~~  228 (484)
T KOG1023|consen  157 PFDLRNLVE---DPDEIILRVKKGGSNPFRPSIELLN-ELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINKGG  228 (484)
T ss_pred             ccccccccC---ChHHHHHHHHhcCCCCcCcchhhhh-hcchHHHHHHHHhcccChhhCccHHHHHhhhhhhcccc
Confidence            998432111   1112222222201   122211111 22235888999999999999999999999998887653

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.85  E-value=1.7e-21  Score=170.38  Aligned_cols=240  Identities=18%  Similarity=0.202  Sum_probs=170.7

Q ss_pred             HHHHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec----cCCcccc----------------ceEEEecCceEE
Q 042435          136 ENLIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----HHSETED----------------SAFVVYSPQCMF  194 (412)
Q Consensus       136 ~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----~~~~~~~----------------~~~~~~~~~~~~  194 (412)
                      .++.. .+.|.+.++||+|+||.+|.|.. .+|+.||||.-    +|+....                ......+.+...
T Consensus         9 ~~~iv-~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynv   87 (341)
T KOG1163|consen    9 EELIV-GGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNV   87 (341)
T ss_pred             hhhee-ccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCCCcchhHHHHHHHHhccCCCCchhhhhccccccce
Confidence            34433 35699999999999999999954 78999999963    3433221                122245567778


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC---CCcEEEeecCCc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS---NLEAFVADFGTV  271 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~---~~~~kl~DfGla  271 (412)
                      +|||.+ +.+|.+++.-..  ..++..+.+-++-|++.-++|+|.+   +.+||||||+|.|..-   ..++.++|||+|
T Consensus        88 lVMdLL-GPsLEdLfnfC~--R~ftmkTvLMLaDQml~RiEyvH~r---~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLa  161 (341)
T KOG1163|consen   88 LVMDLL-GPSLEDLFNFCS--RRFTMKTVLMLADQMLSRIEYVHLR---NFIHRDIKPDNFLMGLGRHCNKLYLIDFGLA  161 (341)
T ss_pred             eeeecc-CccHHHHHHHHh--hhhhHHhHHHHHHHHHHHHHHHHhh---ccccccCCccceeeccccccceEEEEeccch
Confidence            999998 779988876433  2588899999999999999999999   8999999999999963   356889999999


Q ss_pred             cccCCCCC-------CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHh
Q 042435          272 RLLDVDSS-------NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDIL  344 (412)
Q Consensus       272 ~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~  344 (412)
                      +.+.....       ......||..|.+-....+...+.+.|+=|+|.+|...--|..||+......    .......+.
T Consensus       162 Kky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~t----k~QKyEkI~  237 (341)
T KOG1163|consen  162 KKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAAT----KKQKYEKIS  237 (341)
T ss_pred             hhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccchhh----HHHHHHHHH
Confidence            87643221       1234579999999888888888999999999999999999999998543211    111222333


Q ss_pred             hhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHH
Q 042435          345 YQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQ  386 (412)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  386 (412)
                      ...+..+...-+...+.++.-.+..|-..--++-|...-+.+
T Consensus       238 EkK~s~~ie~LC~G~P~EF~myl~Y~R~L~F~E~Pdy~ylrq  279 (341)
T KOG1163|consen  238 EKKMSTPIEVLCKGFPAEFAMYLNYCRGLGFEEKPDYMYLRQ  279 (341)
T ss_pred             HhhcCCCHHHHhCCCcHHHHHHHHHHhhcCCCCCCcHHHHHH
Confidence            333333322222222333555666777777777776544433

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=4.7e-22  Score=203.63  Aligned_cols=232  Identities=19%  Similarity=0.233  Sum_probs=160.4

Q ss_pred             ccceeeeecCceEEEEEEe-CCCcEEEEEecc---------------------------CCccccceEEEecCceEEEEE
Q 042435          146 HIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH---------------------------HSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       146 ~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~---------------------------~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ...+++|.|++|.|+.... ...+..+.|..+                           |+++........+.....-+|
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhh
Confidence            3457899999998777743 334444444322                           222211111122223334449


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      |||++ +|+.++....   .++...+..++.|+..|++|+|+.   +|.|||+|++|++++.++.+||+|||.+......
T Consensus       401 E~~~~-Dlf~~~~~~~---~~~~~e~~c~fKqL~~Gv~y~h~~---GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~  473 (601)
T KOG0590|consen  401 EYCPY-DLFSLVMSNG---KLTPLEADCFFKQLLRGVKYLHSM---GLAHRDLKLENLLVTENGILKIIDFGAASVFRYP  473 (601)
T ss_pred             hcccH-HHHHHHhccc---ccchhhhhHHHHHHHHHHHHHHhc---CceeccCccccEEEecCCceEEeecCcceeeccC
Confidence            99999 9999887652   477788889999999999999999   9999999999999999999999999998765433


Q ss_pred             CC----CcccccccccccccccccCcccCc-ccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          278 SS----NRTLQAGTYGYIALELVYTMVVTE-KCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       278 ~~----~~~~~~gt~~y~aPE~~~~~~~s~-ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ..    ......|+-.|+|||.+.+..|++ ..||||.|+++..|++|+.||.....-....   ...............
T Consensus       474 ~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~---~~~~~~~~~~~~~~~  550 (601)
T KOG0590|consen  474 WEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSF---KTNNYSDQRNIFEGP  550 (601)
T ss_pred             cchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccch---hhhccccccccccCh
Confidence            22    235568999999999999999886 5999999999999999999987432111100   000000000111111


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..-..........++.++++.||.+|.|+++|++.
T Consensus       551 ~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d  585 (601)
T KOG0590|consen  551 NRLLSLLPRETRIIIYRMLQLDPTKRITIEQILND  585 (601)
T ss_pred             HHHHHhchhhHHHHHHHHccCChhheecHHHHhhC
Confidence            11122223346778899999999999999999864

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.85  E-value=6.5e-21  Score=183.73  Aligned_cols=145  Identities=16%  Similarity=0.133  Sum_probs=108.9

Q ss_pred             HHHhhcCcccceeeeecCceEEEEEEeC--CCcEEEEEeccCC--------------------------ccccceEEEec
Q 042435          138 LIDATEYFHIRYCIGTGGYDSVYKAELP--DGKVVALKKLHHS--------------------------ETEDSAFVVYS  189 (412)
Q Consensus       138 l~~~~~~f~~~~~lG~G~~g~Vy~~~~~--~~~~vAvK~l~~~--------------------------~~~~~~~~~~~  189 (412)
                      .....++|.+.+.||+|+||+||+|.+.  +++.||||++...                          ++..   ....
T Consensus        13 ~~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~---~l~~   89 (365)
T PRK09188         13 IPALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVP---QLLA   89 (365)
T ss_pred             cccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCc---EEEE
Confidence            3345678999999999999999999764  5788899985421                          1111   0122


Q ss_pred             CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCC-CCCCEEecCCCcEEEeec
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDI-SSNNILLNSNLEAFVADF  268 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDl-kp~NILl~~~~~~kl~Df  268 (412)
                      .+..++||||+++++|... ..      ..   ...++.++++||+|||++   +|+|||| ||+|||++.++.+||+||
T Consensus        90 ~~~~~LVmE~~~G~~L~~~-~~------~~---~~~~~~~i~~aL~~lH~~---gIiHrDL~KP~NILv~~~~~ikLiDF  156 (365)
T PRK09188         90 TGKDGLVRGWTEGVPLHLA-RP------HG---DPAWFRSAHRALRDLHRA---GITHNDLAKPQNWLMGPDGEAAVIDF  156 (365)
T ss_pred             cCCcEEEEEccCCCCHHHh-Cc------cc---hHHHHHHHHHHHHHHHHC---CCeeCCCCCcceEEEcCCCCEEEEEC
Confidence            3568999999999999632 11      11   135788999999999998   9999999 999999999999999999


Q ss_pred             CCccccCCCCCC--------cccccccccccccccccC
Q 042435          269 GTVRLLDVDSSN--------RTLQAGTYGYIALELVYT  298 (412)
Q Consensus       269 Gla~~~~~~~~~--------~~~~~gt~~y~aPE~~~~  298 (412)
                      |+++.+......        .....+++.|+|||.+..
T Consensus       157 GlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~~~  194 (365)
T PRK09188        157 QLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDALTP  194 (365)
T ss_pred             ccceecccCcchhhhhhhhhhhhhhccCccCCcccCCh
Confidence            999876443211        134567888999999863

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.84  E-value=9.6e-21  Score=172.67  Aligned_cols=179  Identities=17%  Similarity=0.241  Sum_probs=145.8

Q ss_pred             cCcccceeeeecCceEEEEEE-eCCCcEEEEEecc--------------------CCccccceEEEecCceEEEEEEecc
Q 042435          143 EYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLH--------------------HSETEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~-~~~~~~vAvK~l~--------------------~~~~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      -+|.++++||+|+||..+.|. +-+++.||||.-.                    .+.+........++.+..||+|.+ 
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidLL-  106 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDLL-  106 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEeccccCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhhh-
Confidence            369999999999999999995 4689999999531                    122222333344556678999998 


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC-----CCcEEEeecCCccccCC
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS-----NLEAFVADFGTVRLLDV  276 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~-----~~~~kl~DfGla~~~~~  276 (412)
                      |.||++++.-.+  ..++..++..+|.|+..-++|+|++   .+|.|||||+|.||..     ...+.++|||+|+.+..
T Consensus       107 GPSLEDLFD~Cg--R~FSvKTV~miA~Qmi~rie~vH~k---~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrD  181 (449)
T KOG1165|consen  107 GPSLEDLFDLCG--RRFSVKTVAMIAKQMITRIEYVHEK---DLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRD  181 (449)
T ss_pred             CcCHHHHHHHhc--CcccHHhHHHHHHHHHHHHHHHHhc---ceeecccCccceeecCCCCCCCceEEEEeccchhhhcC
Confidence            779988876443  3589999999999999999999999   9999999999999963     34588999999997744


Q ss_pred             CCC-------CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccc
Q 042435          277 DSS-------NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELL  327 (412)
Q Consensus       277 ~~~-------~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~  327 (412)
                      ...       ......||.+||+-....+...+.+.|+=|+|-+++..+-|..||+..
T Consensus       182 p~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGL  239 (449)
T KOG1165|consen  182 PKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGL  239 (449)
T ss_pred             ccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCccccc
Confidence            322       124567999999999999999999999999999999999999999854

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.83  E-value=1e-19  Score=172.49  Aligned_cols=234  Identities=26%  Similarity=0.352  Sum_probs=169.7

Q ss_pred             cccceeeeecCceEEEEEEeCCCcEEEEEeccCC-------------------------ccccceEEEecCceEEEEEEe
Q 042435          145 FHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHS-------------------------ETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~-------------------------~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      |.....||.|+||.||++...  ..+|+|.+...                         ++.............+++++|
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   79 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY   79 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence            667789999999999999886  78888876432                         233333334445557999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC-cEEEeecCCccccCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL-EAFVADFGTVRLLDVDS  278 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~-~~kl~DfGla~~~~~~~  278 (412)
                      +.++++.+++........+.......++.|++.++.|+|+.   +++|||+||+||+++... .++++|||.++......
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~---~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~  156 (384)
T COG0515          80 VDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSK---GIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPG  156 (384)
T ss_pred             CCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeecCCCCeEEEeccCcceecCCCC
Confidence            99999996655432112478888999999999999999999   899999999999999888 79999999998554433


Q ss_pred             C------CcccccccccccccccccC---cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          279 S------NRTLQAGTYGYIALELVYT---MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       279 ~------~~~~~~gt~~y~aPE~~~~---~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      .      ......||..|+|||...+   ..++...|+||+|++++++++|..||......    .......+.+.....
T Consensus       157 ~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~~~~~~  232 (384)
T COG0515         157 STSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNS----SATSQTLKIILELPT  232 (384)
T ss_pred             ccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCcc----ccHHHHHHHHHhcCC
Confidence            2      2355689999999999987   57888999999999999999999996632110    001112222222221


Q ss_pred             C----ccchhh-HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          350 P----PINQKI-IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       350 ~----~~~~~~-~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      +    ...... ......+.+++..|+..+|..|.+..+....
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         233 PSLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             cccccccCccccchhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence            1    111100 0111347788899999999999998887764

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=8.7e-22  Score=190.06  Aligned_cols=174  Identities=26%  Similarity=0.381  Sum_probs=133.4

Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                      +.|+.|++|...+|.+||...+.....+|...+.++.|++.|++|   +   +.+|+|+||.||....+.++||.|||+.
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k---~~ihrdlkp~nif~~~d~q~kIgDFgl~  403 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---K---GLIHRDLKPSNIFFSDDDQLKIGDFGLV  403 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---c---cchhhhccccccccccchhhhhhhhhhe
Confidence            468999999999999999877666678899999999999999999   5   8999999999999999999999999998


Q ss_pred             cccCCCC------CCcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHh
Q 042435          272 RLLDVDS------SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDIL  344 (412)
Q Consensus       272 ~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~  344 (412)
                      .......      ...+...||..||+||.+.+..|+.|+||||+|++|+|+++ =..+++.          ...+.++-
T Consensus       404 ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~er----------~~t~~d~r  473 (516)
T KOG1033|consen  404 TSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFER----------IATLTDIR  473 (516)
T ss_pred             eecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHHH----------HHhhhhhh
Confidence            7654433      12355689999999999999999999999999999999997 2222221          11122222


Q ss_pred             hhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHH
Q 042435          345 YQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRIS  385 (412)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl  385 (412)
                      +..+++.    ...+...-..++.+++...|.+||++.++.
T Consensus       474 ~g~ip~~----~~~d~p~e~~ll~~lls~~p~~RP~~~~~~  510 (516)
T KOG1033|consen  474 DGIIPPE----FLQDYPEEYTLLQQLLSPSPEERPSAIEVA  510 (516)
T ss_pred             cCCCChH----HhhcCcHHHHHHHHhcCCCcccCchHHHHh
Confidence            2222221    122222245788899999999999655543

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.81  E-value=7.7e-20  Score=162.01  Aligned_cols=120  Identities=19%  Similarity=0.235  Sum_probs=91.9

Q ss_pred             ceeeeecCceEEEEEEeCCCcEEEEEeccCCccc------------cc-------------------e----------EE
Q 042435          148 RYCIGTGGYDSVYKAELPDGKVVALKKLHHSETE------------DS-------------------A----------FV  186 (412)
Q Consensus       148 ~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~------------~~-------------------~----------~~  186 (412)
                      ...||+|+||.||+|...+|+.||||.++.....            ..                   +          .+
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            3679999999999998889999999998643210            00                   0          00


Q ss_pred             ----EecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHH-HhCCCCCcEEeCCCCCCEEecCCC
Q 042435          187 ----VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL-HHDCTPSIVHRDISSNNILLNSNL  261 (412)
Q Consensus       187 ----~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~L-H~~~~~~ivHrDlkp~NILl~~~~  261 (412)
                          .......++||||++++++.......   ..+++.....++.|++.+|.|+ |+.   +|+||||||+||+++ ++
T Consensus        82 ~~p~~~~~~~~~iVmE~i~g~~l~~~~~~~---~~~~~~~~~~i~~qi~~~L~~l~H~~---giiHrDlkP~NIli~-~~  154 (190)
T cd05147          82 PCPEPILLKSHVLVMEFIGDDGWAAPRLKD---APLSESKARELYLQVIQIMRILYQDC---RLVHADLSEYNLLYH-DG  154 (190)
T ss_pred             CCCcEEEecCCEEEEEEeCCCCCcchhhhc---CCCCHHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEE-CC
Confidence                01112238999999987776543222   2488899999999999999999 677   999999999999998 47


Q ss_pred             cEEEeecCCcccc
Q 042435          262 EAFVADFGTVRLL  274 (412)
Q Consensus       262 ~~kl~DfGla~~~  274 (412)
                      .++|+|||+|...
T Consensus       155 ~v~LiDFG~a~~~  167 (190)
T cd05147         155 KLYIIDVSQSVEH  167 (190)
T ss_pred             cEEEEEccccccC
Confidence            8999999999754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.80  E-value=2e-20  Score=192.79  Aligned_cols=228  Identities=22%  Similarity=0.261  Sum_probs=160.7

Q ss_pred             CcccceeeeecCceEEEEEEeCCCcEEEEEeccC------------------------CccccceEEEecCceEEEEEEe
Q 042435          144 YFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHH------------------------SETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~------------------------~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ++...+.||++.|=+|.+|+.+.|. |+||++-.                        +|......+..+....|||-+|
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylvRqy  102 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLVRQY  102 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHHHHH
Confidence            5777789999999999999998888 78887632                        2222222223344556788888


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc--CCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL--DVD  277 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~--~~~  277 (412)
                      ..+ +|+|.+.-+.   -+...+..-|+.|+..||..+|..   +|+|||||.+|||++.-..+.|+||.--|..  ..+
T Consensus       103 vkh-nLyDRlSTRP---FL~~iEKkWiaFQLL~al~qcH~~---gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeD  175 (1431)
T KOG1240|consen  103 VKH-NLYDRLSTRP---FLVLIEKKWIAFQLLKALSQCHKL---GVCHGDIKSENILITSWNWLYLTDFASFKPTYLPED  175 (1431)
T ss_pred             Hhh-hhhhhhccch---HHHHHHHHHHHHHHHHHHHHHHHc---CccccccccceEEEeeechhhhhcccccCCccCCCC
Confidence            865 8999887654   477778888999999999999999   9999999999999999999999999765532  111


Q ss_pred             C-CCccc----ccccccccccccccCc----------c-cCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchh
Q 042435          278 S-SNRTL----QAGTYGYIALELVYTM----------V-VTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIML  340 (412)
Q Consensus       278 ~-~~~~~----~~gt~~y~aPE~~~~~----------~-~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~  340 (412)
                      . .....    ...-..|.|||.+...          . .+++-||||+||++.|+++ |++||..-+-..-........
T Consensus       176 NPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LSQL~aYr~~~~~~~  255 (1431)
T KOG1240|consen  176 NPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLSQLLAYRSGNADDP  255 (1431)
T ss_pred             CcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHHHHHhHhccCccCH
Confidence            1 11111    1223479999987531          1 5678999999999999998 688887332211111111111


Q ss_pred             hHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhc
Q 042435          341 IDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG  390 (412)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~  390 (412)
                      ...+.+ +..          ..+..++..|++.||++|-++++.++.-++
T Consensus       256 e~~Le~-Ied----------~~~Rnlil~Mi~rdPs~RlSAedyL~~yrG  294 (1431)
T KOG1240|consen  256 EQLLEK-IED----------VSLRNLILSMIQRDPSKRLSAEDYLQKYRG  294 (1431)
T ss_pred             HHHHHh-CcC----------ccHHHHHHHHHccCchhccCHHHHHHhhhc
Confidence            111111 111          126788999999999999999999987444

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.79  E-value=2.1e-19  Score=166.44  Aligned_cols=211  Identities=18%  Similarity=0.234  Sum_probs=133.1

Q ss_pred             cccceeeeecCceEEEEEEeC-CCcEEEEEeccCCccccc-----------------------------eE-----E---
Q 042435          145 FHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHHSETEDS-----------------------------AF-----V---  186 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~~~~~~~-----------------------------~~-----~---  186 (412)
                      +...+.||.|+++.||.+... +|+.+|||.+.-+.....                             .+     .   
T Consensus        14 l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i   93 (288)
T PF14531_consen   14 LVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRI   93 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEE
T ss_pred             EEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEE
Confidence            455689999999999999774 599999996532210000                             00     0   


Q ss_pred             ------EecC---c-----eEEEEEEeccCCceeeeeccC---c-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEe
Q 042435          187 ------VYSP---Q-----CMFFIYEYMERGSLFCVLRDD---D-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHR  248 (412)
Q Consensus       187 ------~~~~---~-----~~~lv~ey~~~gsL~~~l~~~---~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHr  248 (412)
                            ....   .     ..+++|+-+ .+||.+++..-   . ....+....++.+..|+++.+++||+.   |++|+
T Consensus        94 ~~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~---GlVHg  169 (288)
T PF14531_consen   94 PGKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSY---GLVHG  169 (288)
T ss_dssp             TTS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEEES
T ss_pred             cCCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhc---ceEec
Confidence                  0001   1     236677777 45887765421   1 112345667788889999999999999   99999


Q ss_pred             CCCCCCEEecCCCcEEEeecCCccccCCCCCCcccccccccccccccccC--------cccCcccccHHHHHHHHHHHhC
Q 042435          249 DISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT--------MVVTEKCVIYSFGVVALEVLMG  320 (412)
Q Consensus       249 Dlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~s~ksDv~S~Gvil~elltg  320 (412)
                      ||||+|++++.+|.++|+||+........   ......+..|.+||....        -.++.+.|.|++|+++|.|++|
T Consensus       170 di~~~nfll~~~G~v~Lg~F~~~~r~g~~---~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~  246 (288)
T PF14531_consen  170 DIKPENFLLDQDGGVFLGDFSSLVRAGTR---YRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCG  246 (288)
T ss_dssp             T-SGGGEEE-TTS-EEE--GGGEEETTEE---EEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHS
T ss_pred             ccceeeEEEcCCCCEEEcChHHHeecCce---eeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHc
Confidence            99999999999999999999876543221   111334577999997643        2578899999999999999999


Q ss_pred             CCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCC
Q 042435          321 THPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSR  378 (412)
Q Consensus       321 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~R  378 (412)
                      +.||+........   ..        ...  .+.   +....+..|+..+++.||.+|
T Consensus       247 ~lPf~~~~~~~~~---~~--------~f~--~C~---~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  247 RLPFGLSSPEADP---EW--------DFS--RCR---DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             S-STCCCGGGSTS---GG--------GGT--TSS------HHHHHHHHHHT-SSGGGS
T ss_pred             cCCCCCCCccccc---cc--------cch--hcC---CcCHHHHHHHHHHccCCcccC
Confidence            9999843211111   00        111  011   233348889999999999988

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.79  E-value=1.7e-19  Score=168.13  Aligned_cols=181  Identities=20%  Similarity=0.284  Sum_probs=123.5

Q ss_pred             CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe--cCCC--cEEE
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL--NSNL--EAFV  265 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl--~~~~--~~kl  265 (412)
                      +..+|+||.-.+. +|..++....    .+...+.-++.|+++|+.|||.+   +|.|||+|++|||+  |+|.  ...|
T Consensus       315 ~~tlylvMkrY~~-tLr~yl~~~~----~s~r~~~~~laQlLEav~hL~~h---gvAhRDlKSDNiL~ElddD~~P~LVv  386 (598)
T KOG4158|consen  315 PKTLYLVMKRYRQ-TLREYLWTRH----RSYRTGRVILAQLLEAVTHLHKH---GVAHRDLKSDNILLELDDDEIPQLVV  386 (598)
T ss_pred             CceEEEehhcchh-hHHHHHhcCC----CchHHHHHHHHHHHHHHHHHHHc---cchhhcccccceEEEecCCCCcEEEE
Confidence            4567899987755 8888886553    55566667889999999999999   99999999999999  4444  4678


Q ss_pred             eecCCccccCCC------CCCcccccccccccccccccCcc-----c-CcccccHHHHHHHHHHHhCCCCcccccccccC
Q 042435          266 ADFGTVRLLDVD------SSNRTLQAGTYGYIALELVYTMV-----V-TEKCVIYSFGVVALEVLMGTHPGELLLSLSSS  333 (412)
Q Consensus       266 ~DfGla~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~-----~-s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~  333 (412)
                      +|||.+-.-+..      .+......|.-.-||||+....+     . -.|+|.|+.|.+.||+++...||...-..   
T Consensus       387 aDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem---  463 (598)
T KOG4158|consen  387 ADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEM---  463 (598)
T ss_pred             cccceeeeccccccccccccccccCCCcceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchh---
Confidence            999986432211      11123345777889999986432     1 14899999999999999999999731000   


Q ss_pred             CCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          334 SGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      .-   .... ..+...++.++..   ...+.+++...++.||++||+..-..+.|
T Consensus       464 ~L---~~r~-Yqe~qLPalp~~v---pp~~rqlV~~lL~r~pskRvsp~iAANvl  511 (598)
T KOG4158|consen  464 LL---DTRT-YQESQLPALPSRV---PPVARQLVFDLLKRDPSKRVSPNIAANVL  511 (598)
T ss_pred             ee---chhh-hhhhhCCCCcccC---ChHHHHHHHHHhcCCccccCCccHHHhHH
Confidence            00   0011 1111122222222   22377888899999999999876665554

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.79  E-value=9.8e-19  Score=155.23  Aligned_cols=120  Identities=23%  Similarity=0.283  Sum_probs=92.2

Q ss_pred             ceeeeecCceEEEEEEeCCCcEEEEEeccCCccccc---------------------------------e--------E-
Q 042435          148 RYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDS---------------------------------A--------F-  185 (412)
Q Consensus       148 ~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~~~---------------------------------~--------~-  185 (412)
                      ...||+|+||.||+|...+|+.||||.++.......                                 .        . 
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            467999999999999887899999998875421000                                 0        0 


Q ss_pred             ---EEecCceEEEEEEeccCCceeee-eccCcccccCCHHHHHHHHHHHHHHHHHHHh-CCCCCcEEeCCCCCCEEecCC
Q 042435          186 ---VVYSPQCMFFIYEYMERGSLFCV-LRDDDEAIELNWTRRMNIVKSVAHALSYLHH-DCTPSIVHRDISSNNILLNSN  260 (412)
Q Consensus       186 ---~~~~~~~~~lv~ey~~~gsL~~~-l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~-~~~~~ivHrDlkp~NILl~~~  260 (412)
                         ........++||||++++++... +...    .++......++.|++.++.++|+ .   +|+||||||+||+++ +
T Consensus        82 ~~p~~~~~~~~~lVmE~~~g~~~~~~~l~~~----~~~~~~~~~i~~~l~~~l~~lH~~~---givHrDlkP~NIll~-~  153 (190)
T cd05145          82 PVPEPILLKKNVLVMEFIGDDGSPAPRLKDV----PLEEEEAEELYEQVVEQMRRLYQEA---GLVHGDLSEYNILYH-D  153 (190)
T ss_pred             CCceEEEecCCEEEEEEecCCCchhhhhhhc----cCCHHHHHHHHHHHHHHHHHHHHhC---CEecCCCChhhEEEE-C
Confidence               00001123899999998755432 3221    46778889999999999999999 7   999999999999999 7


Q ss_pred             CcEEEeecCCccccC
Q 042435          261 LEAFVADFGTVRLLD  275 (412)
Q Consensus       261 ~~~kl~DfGla~~~~  275 (412)
                      +.++|+|||+++...
T Consensus       154 ~~~~liDFG~a~~~~  168 (190)
T cd05145         154 GKPYIIDVSQAVELD  168 (190)
T ss_pred             CCEEEEEcccceecC
Confidence            899999999998654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=2.7e-18  Score=179.87  Aligned_cols=177  Identities=23%  Similarity=0.263  Sum_probs=146.3

Q ss_pred             hhcCcccceeeeecCceEEEEEEeCCCcEEEEEeccCCccccceEE---------------------EecCceEEEEEEe
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV---------------------VYSPQCMFFIYEY  199 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~---------------------~~~~~~~~lv~ey  199 (412)
                      ..+.|.+.+.||+|+||+||+|...+|+.||+|.=+.++.-..+..                     ....+.-+||+||
T Consensus       696 ~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~S~lv~ey  775 (974)
T KOG1166|consen  696 GGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWEFYICLQVMERLKPQMLPSIMHISSAHVFQNASVLVSEY  775 (974)
T ss_pred             cceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCceeeeehHHHHHhhchhhhcchHHHHHHHccCCcceeeeec
Confidence            3456888899999999999999988899999997666554332221                     2234556899999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec-------CCCcEEEeecCCcc
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN-------SNLEAFVADFGTVR  272 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~-------~~~~~kl~DfGla~  272 (412)
                      .+.|+|.+++....   .++|...+.+..|+++-++.||..   +|||+||||+|.||.       ++..++|+|||.+-
T Consensus       776 ~~~Gtlld~~N~~~---~m~e~lv~~~~~qml~ive~lH~~---~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~si  849 (974)
T KOG1166|consen  776 SPYGTLLDLINTNK---VMDEYLVMFFSCQMLRIVEHLHAM---GIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSI  849 (974)
T ss_pred             cccccHHHhhccCC---CCCchhhhHHHHHHHHHHHHHHhc---ceecccCCcceeEeecccCCCCcccceEEEecccce
Confidence            99999999998443   589999999999999999999999   999999999999993       34568999999986


Q ss_pred             ccCC--CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCC
Q 042435          273 LLDV--DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP  323 (412)
Q Consensus       273 ~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P  323 (412)
                      .+..  +........+|-.+-++|+..+..++...|.|.++.+++-|+.|+.-
T Consensus       850 Dm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~  902 (974)
T KOG1166|consen  850 DMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYM  902 (974)
T ss_pred             eeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHH
Confidence            5432  22334556788899999999999999999999999999999999854

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.76  E-value=1.2e-19  Score=178.49  Aligned_cols=203  Identities=24%  Similarity=0.328  Sum_probs=152.2

Q ss_pred             eeecCceEEEEEEe----CCCcEEEEEeccCCc------------------------cccceEEEecCceEEEEEEeccC
Q 042435          151 IGTGGYDSVYKAEL----PDGKVVALKKLHHSE------------------------TEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       151 lG~G~~g~Vy~~~~----~~~~~vAvK~l~~~~------------------------~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      +|+|+||.|+.++-    +.|..+|+|.++...                        .......+..+...+++++|..+
T Consensus         2 lg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~rg   81 (612)
T KOG0603|consen    2 LGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLRG   81 (612)
T ss_pred             CCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhccc
Confidence            68999999998732    457778888664322                        22222335667778999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|...+....   .++......+...++-+++++|+.   +|+|||+|++||+++.+|.+++.|||+++..-.....  
T Consensus        82 g~lft~l~~~~---~f~~~~~~~~~aelaLald~lh~l---~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~~--  153 (612)
T KOG0603|consen   82 GDLFTRLSKEV---MFDELDVAFYLAELALALDHLHKL---GIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIA--  153 (612)
T ss_pred             chhhhccccCC---chHHHHHHHHHHHHHHHHhhcchh---HHHHhcccccceeecccCccccCCchhhhHhHhhhhc--
Confidence            99988887654   466666677788899999999998   9999999999999999999999999999865433222  


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                        +||..|||||+..  .....+|.||||++++||+||..||..           ..+..+....+..+  .   +....
T Consensus       154 --cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~-----------~~~~~Il~~~~~~p--~---~l~~~  213 (612)
T KOG0603|consen  154 --CGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG-----------DTMKRILKAELEMP--R---ELSAE  213 (612)
T ss_pred             --ccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch-----------HHHHHHhhhccCCc--h---hhhHH
Confidence              8999999999987  456789999999999999999999873           22333333222221  2   22223


Q ss_pred             HHHHHHhcCcCCCCCCCCH
Q 042435          363 VSTIALACLRSKPKSRPTM  381 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs~  381 (412)
                      ..++...+...+|..|--.
T Consensus       214 a~~~~~~l~~r~p~nrLg~  232 (612)
T KOG0603|consen  214 ARSLFRQLFKRNPENRLGA  232 (612)
T ss_pred             HHHHHHHHHhhCHHHHhcc
Confidence            5667778888888888644

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.75  E-value=1.9e-18  Score=155.43  Aligned_cols=167  Identities=14%  Similarity=0.116  Sum_probs=117.9

Q ss_pred             eeeeccCccccHHHHHH--hhcCcccceeeeecCceEEEEEEeCCCcEEEEEeccCCccccc------------------
Q 042435          124 FSVWNYDGKILYENLID--ATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDS------------------  183 (412)
Q Consensus       124 ~~~~~~~~~~~~~~l~~--~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~~~------------------  183 (412)
                      +.++-.+....|.++.+  ..++|+..+++|.|+||.||.+.. ++..+|+|.++.......                  
T Consensus        10 ~~~~~~~~~~~~~~~~~~~l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~   88 (232)
T PRK10359         10 YTVFYKDNDNKYKEIFDDFLSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQ   88 (232)
T ss_pred             eEEEecCCcccHHHHHHHHhhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHH
Confidence            34444445555656543  357899999999999999999866 577899998853221111                  


Q ss_pred             ------------eEEEe--------cCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCC
Q 042435          184 ------------AFVVY--------SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP  243 (412)
Q Consensus       184 ------------~~~~~--------~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~  243 (412)
                                  .....        .....+++|||++|.+|.++..       ++.    ....+++.++..+|+.   
T Consensus        89 l~rL~~~GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~-------~~~----~~~~~i~~~l~~lH~~---  154 (232)
T PRK10359         89 TDRVRSEGLASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMPE-------ISE----DVKAKIKASIESLHQH---  154 (232)
T ss_pred             HHHHHHCCCCcceEeeeecccccccccCCeEEEEEEECCccHHHhhh-------ccH----HHHHHHHHHHHHHHHc---
Confidence                        11111        1235789999999999977631       222    2456899999999999   


Q ss_pred             CcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHH
Q 042435          244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVL  318 (412)
Q Consensus       244 ~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ell  318 (412)
                      +++|||+||+||+++.++ ++++|||..+........            ..+.....+..++|+||||+++.-..
T Consensus       155 gi~H~Dikp~Nili~~~g-i~liDfg~~~~~~e~~a~------------d~~vler~y~~~~di~~lg~~~~~~~  216 (232)
T PRK10359        155 GMVSGDPHKGNFIVSKNG-LRIIDLSGKRCTAQRKAK------------DRIDLERHYGIKNEIKDLGYYLLIYK  216 (232)
T ss_pred             CCccCCCChHHEEEeCCC-EEEEECCCcccccchhhH------------HHHHHHhHhcccccccceeEeehHHH
Confidence            999999999999999888 999999988654321111            01233445667999999999887654

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.74  E-value=1.4e-18  Score=179.06  Aligned_cols=207  Identities=21%  Similarity=0.259  Sum_probs=145.1

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEeccCCccccceEEEecCceEEEEEEeccCCceeeeeccCcccccCCH
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNW  220 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~~~~~~~~~~~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~  220 (412)
                      ..+|+..+.|..|+||.||..+++ ..+.+|+ +++..++.-.. +....+..+.|      |+-...++..+.   ++ 
T Consensus        82 e~df~~IklisngAygavylvrh~~trqrfa~-kiNkq~lilRn-ilt~a~npfvv------gDc~tllk~~g~---lP-  149 (1205)
T KOG0606|consen   82 ESDFNTIKLISNGAYGAVYLVRHKETRQRFAM-KINKQNLILRN-ILTFAGNPFVV------GDCATLLKNIGP---LP-  149 (1205)
T ss_pred             ccccceeEeeccCCCCceeeeeccccccchhh-cccccchhhhc-cccccCCccee------chhhhhcccCCC---Cc-
Confidence            468999999999999999999875 4678999 55555544332 11222333333      455555544331   21 


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC---------------CCccccc
Q 042435          221 TRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS---------------SNRTLQA  285 (412)
Q Consensus       221 ~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~---------------~~~~~~~  285 (412)
                             .+++.+++|||+.   +|+|||+||+|.++..-+.+|++|||+++......               ......+
T Consensus       150 -------vdmvla~Eylh~y---givhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvc  219 (1205)
T KOG0606|consen  150 -------VDMVLAVEYLHSY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVC  219 (1205)
T ss_pred             -------chhhHHhHhhccC---CeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhcccc
Confidence                   1227899999998   99999999999999999999999999987542111               0113458


Q ss_pred             ccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHH
Q 042435          286 GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVST  365 (412)
Q Consensus       286 gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (412)
                      ||+.|+|||++....|....|.|++|+|+||.+-|..||...       .+++.+..++...+.-+  +.......++.+
T Consensus       220 gTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGd-------tpeelfg~visd~i~wp--E~dea~p~Ea~d  290 (1205)
T KOG0606|consen  220 GTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGD-------TPEELFGQVISDDIEWP--EEDEALPPEAQD  290 (1205)
T ss_pred             CCccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCC-------CHHHHHhhhhhhhcccc--ccCcCCCHHHHH
Confidence            999999999999999999999999999999999999998732       22232333332222211  111122334778


Q ss_pred             HHHhcCcCCCCCCC
Q 042435          366 IALACLRSKPKSRP  379 (412)
Q Consensus       366 l~~~Cl~~dP~~RP  379 (412)
                      ++.+.++.+|..|-
T Consensus       291 li~~LL~qnp~~Rl  304 (1205)
T KOG0606|consen  291 LIEQLLRQNPLCRL  304 (1205)
T ss_pred             HHHHHHHhChHhhc
Confidence            88999999999994

>smart00090 RIO RIO-like kinase

Probab=99.72  E-value=2.8e-17  Score=150.54  Aligned_cols=124  Identities=23%  Similarity=0.217  Sum_probs=95.9

Q ss_pred             CcccceeeeecCceEEEEEE--eCCCcEEEEEeccCCcccc----------c---------------------------e
Q 042435          144 YFHIRYCIGTGGYDSVYKAE--LPDGKVVALKKLHHSETED----------S---------------------------A  184 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~--~~~~~~vAvK~l~~~~~~~----------~---------------------------~  184 (412)
                      .|++.+.||+|+||.||+|.  ..+|+.||+|.++......          .                           .
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            47788999999999999998  5689999999886542100          0                           0


Q ss_pred             --EE----EecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCC-cEEeCCCCCCEEe
Q 042435          185 --FV----VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS-IVHRDISSNNILL  257 (412)
Q Consensus       185 --~~----~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~-ivHrDlkp~NILl  257 (412)
                        ..    .......++||||+++++|........   .+...+...++.|++.++++||++   + ++||||||+||++
T Consensus       109 ~~~i~~p~~~~~~~~~lV~E~~~g~~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---g~iiH~Dikp~NIli  182 (237)
T smart00090      109 EAGVPVPKPIAWRRNVLVMEFIGGDGLPAPRLKDV---EPEEEEEFELYDDILEEMRKLYKE---GELVHGDLSEYNILV  182 (237)
T ss_pred             hcCCCCCeeeEecCceEEEEEecCCcccccccccC---CcchHHHHHHHHHHHHHHHHHHhc---CCEEeCCCChhhEEE
Confidence              00    111234589999999988876543222   345556778999999999999999   8 9999999999999


Q ss_pred             cCCCcEEEeecCCcccc
Q 042435          258 NSNLEAFVADFGTVRLL  274 (412)
Q Consensus       258 ~~~~~~kl~DfGla~~~  274 (412)
                      + +++++++|||.+...
T Consensus       183 ~-~~~i~LiDFg~a~~~  198 (237)
T smart00090      183 H-DGKVVIIDVSQSVEL  198 (237)
T ss_pred             E-CCCEEEEEChhhhcc
Confidence            9 889999999998753

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.69  E-value=1.2e-16  Score=141.15  Aligned_cols=162  Identities=9%  Similarity=0.047  Sum_probs=114.6

Q ss_pred             ccceeeeecCceEEEEEEeCCCcEEEEEeccCCc--------------------------cccceEEEecCceEEEEEEe
Q 042435          146 HIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSE--------------------------TEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       146 ~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~--------------------------~~~~~~~~~~~~~~~lv~ey  199 (412)
                      .+...|++|+||+||.+.. .+..++.+.+....                          +....    .-+..+++|||
T Consensus         5 ~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll----~~~~~~lvmey   79 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLL----HWDGRHLDRSY   79 (218)
T ss_pred             ccceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEE----EEcCEEEEEee
Confidence            4567899999999998766 66777766543211                          11111    12456999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCC-CCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDI-SSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDl-kp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      +++.+|.+.+..          ....++.|++.+|+++|++   +|+|||| ||+|||++.++.++|+|||++.......
T Consensus        80 I~G~~L~~~~~~----------~~~~~~~qi~~~L~~lH~~---GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~  146 (218)
T PRK12274         80 LAGAAMYQRPPR----------GDLAYFRAARRLLQQLHRC---GVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRA  146 (218)
T ss_pred             ecCccHHhhhhh----------hhHHHHHHHHHHHHHHHHC---cCccCCCCCcceEEEcCCCCEEEEECCCceecCCcc
Confidence            999888654321          1134778999999999999   9999999 7999999999999999999998554332


Q ss_pred             CC-------------cccccccccccccccccCc-ccC-cccccHHHHHHHHHHHhCCCCcc
Q 042435          279 SN-------------RTLQAGTYGYIALELVYTM-VVT-EKCVIYSFGVVALEVLMGTHPGE  325 (412)
Q Consensus       279 ~~-------------~~~~~gt~~y~aPE~~~~~-~~s-~ksDv~S~Gvil~elltg~~P~~  325 (412)
                      ..             ......++.|++|+...-. ..+ ...+.++-|.-+|.++|+..|..
T Consensus       147 ~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~  208 (218)
T PRK12274        147 RWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHW  208 (218)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCcc
Confidence            10             0112346677777654321 233 45677899999999999998843

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.69  E-value=1.7e-16  Score=141.83  Aligned_cols=128  Identities=22%  Similarity=0.256  Sum_probs=97.0

Q ss_pred             HHHHHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEeccCCccc-----c----------------------c-----
Q 042435          136 ENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETE-----D----------------------S-----  183 (412)
Q Consensus       136 ~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~-----~----------------------~-----  183 (412)
                      .++......|.+.+.||+|+||.||++..++|+.||||.++.....     .                      .     
T Consensus         8 ~~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l   87 (198)
T cd05144           8 HTLVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAAL   87 (198)
T ss_pred             HHHHHcCchhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHH
Confidence            3444444457888999999999999999888999999976432200     0                      0     


Q ss_pred             -----e----EEEecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCC
Q 042435          184 -----A----FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNN  254 (412)
Q Consensus       184 -----~----~~~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~N  254 (412)
                           .    .........++||||+++++|......         .....++.+++.++.++|+.   +++||||||+|
T Consensus        88 ~~l~~~~i~v~~~~~~~~~~lv~e~~~g~~L~~~~~~---------~~~~~~~~~i~~~l~~lh~~---gi~H~Dl~p~N  155 (198)
T cd05144          88 KALYEEGFPVPKPIDWNRHAVVMEYIDGVELYRVRVL---------EDPEEVLDEILEEIVKAYKH---GIIHGDLSEFN  155 (198)
T ss_pred             HHHHHcCCCCCceeecCCceEEEEEeCCcchhhcccc---------ccHHHHHHHHHHHHHHHHHC---CCCcCCCCccc
Confidence                 0    001123456899999999998765431         23456889999999999998   99999999999


Q ss_pred             EEecCCCcEEEeecCCccccC
Q 042435          255 ILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       255 ILl~~~~~~kl~DfGla~~~~  275 (412)
                      |+++++++++|+|||.+....
T Consensus       156 ill~~~~~~~liDfg~~~~~~  176 (198)
T cd05144         156 ILVDDDEKIYIIDWPQMVSTD  176 (198)
T ss_pred             EEEcCCCcEEEEECCccccCC
Confidence            999999999999999986543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.63  E-value=1.1e-15  Score=137.77  Aligned_cols=113  Identities=19%  Similarity=0.380  Sum_probs=91.2

Q ss_pred             eeeeecCceEEEEEEeCCCcEEEEEeccCC-----------------------------ccccceEEEecCceEEEEEEe
Q 042435          149 YCIGTGGYDSVYKAELPDGKVVALKKLHHS-----------------------------ETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~-----------------------------~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +.||+|++|.||+|.+ +|..+++|.....                             ++......+...+..+++|||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            5789999999999988 6778899964321                             111122234456678899999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      +++++|.+++...      .+ .+..++.+++.+|.++|+.   +++|||++|.||+++ ++.++++|||.++.
T Consensus        81 ~~G~~L~~~~~~~------~~-~~~~i~~~i~~~l~~lH~~---~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         81 IEGEPLKDLINSN------GM-EELELSREIGRLVGKLHSA---GIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             eCCcCHHHHHHhc------cH-HHHHHHHHHHHHHHHHHhC---CcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            9999998887542      22 7888999999999999998   999999999999999 78999999998864

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.61  E-value=1.7e-15  Score=135.31  Aligned_cols=109  Identities=20%  Similarity=0.383  Sum_probs=85.9

Q ss_pred             eeeecCceEEEEEEeCCCcEEEEEeccCCc-----------------------------cccceEEEecCceEEEEEEec
Q 042435          150 CIGTGGYDSVYKAELPDGKVVALKKLHHSE-----------------------------TEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       150 ~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~-----------------------------~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      .||+|+||.||+|.+ +|..+++|......                             +..........+..++||||+
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            389999999999986 67889999753211                             111112234455678999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ++++|.+++....    .      .++.+++.+|.++|+.   +++|+|++|.||+++ ++.++++|||+++.
T Consensus        80 ~g~~l~~~~~~~~----~------~~~~~i~~~l~~lH~~---gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        80 EGKPLKDVIEEGN----D------ELLREIGRLVGKLHKA---GIVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             CCccHHHHHhhcH----H------HHHHHHHHHHHHHHHC---CeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            9999987764322    0      7899999999999998   999999999999999 78999999999874

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.61  E-value=2.2e-15  Score=133.19  Aligned_cols=119  Identities=23%  Similarity=0.258  Sum_probs=87.8

Q ss_pred             ceeeeecCceEEEEEEeCCCcEEEEEeccCCccccc--eE----------------------------------------
Q 042435          148 RYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDS--AF----------------------------------------  185 (412)
Q Consensus       148 ~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~~~--~~----------------------------------------  185 (412)
                      .+.||+|+||.||+|...+|+.||||.++.......  ..                                        
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            467999999999999888899999998765321100  00                                        


Q ss_pred             -EEecCceEEEEEEeccCCceeee-eccCcccccCCHHHHHHHHHHHHHHHHHHHh-CCCCCcEEeCCCCCCEEecCCCc
Q 042435          186 -VVYSPQCMFFIYEYMERGSLFCV-LRDDDEAIELNWTRRMNIVKSVAHALSYLHH-DCTPSIVHRDISSNNILLNSNLE  262 (412)
Q Consensus       186 -~~~~~~~~~lv~ey~~~gsL~~~-l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~-~~~~~ivHrDlkp~NILl~~~~~  262 (412)
                       ........++||||++++++... +....    .. .....++.+++.++.++|. .   +++||||||+||+++ ++.
T Consensus        82 ~~~~~~~~~~lv~e~~~g~~~~~~~l~~~~----~~-~~~~~~~~~~~~~l~~lh~~~---~ivH~Dl~p~Nili~-~~~  152 (187)
T cd05119          82 PKPIDLNRHVLVMEFIGGDGIPAPRLKDVR----LL-EDPEELYDQILELMRKLYREA---GLVHGDLSEYNILVD-DGK  152 (187)
T ss_pred             CceEecCCCEEEEEEeCCCCccChhhhhhh----hc-ccHHHHHHHHHHHHHHHhhcc---CcCcCCCChhhEEEE-CCc
Confidence             01111245899999998654321 21111    11 5567899999999999998 6   999999999999999 899


Q ss_pred             EEEeecCCccccC
Q 042435          263 AFVADFGTVRLLD  275 (412)
Q Consensus       263 ~kl~DfGla~~~~  275 (412)
                      ++++|||.+....
T Consensus       153 ~~liDfg~a~~~~  165 (187)
T cd05119         153 VYIIDVPQAVEID  165 (187)
T ss_pred             EEEEECccccccc
Confidence            9999999987543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK10345 hypothetical protein; Provisional

Probab=99.59  E-value=5.6e-15  Score=132.38  Aligned_cols=115  Identities=17%  Similarity=0.140  Sum_probs=84.6

Q ss_pred             ccceeeeecCceEEEEEEeCCCcEEEEEecc--------------------------CCccccceEEEecCc---e-EEE
Q 042435          146 HIRYCIGTGGYDSVYKAELPDGKVVALKKLH--------------------------HSETEDSAFVVYSPQ---C-MFF  195 (412)
Q Consensus       146 ~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~--------------------------~~~~~~~~~~~~~~~---~-~~l  195 (412)
                      .....||+|+||.||.  +++....+||++.                          |+++.+..+++.++.   . ..+
T Consensus         5 ~~~~~LG~G~~~~Vy~--hp~~~~k~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~   82 (210)
T PRK10345          5 SEQSPLGTGRHRKCYA--HPEDAQRCIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDV   82 (210)
T ss_pred             CCcceecCCCceEEEE--CCCCcCeEEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEE
Confidence            3457899999999996  4333333688643                          466666666666653   3 337


Q ss_pred             EEEe--ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHH-HHHHhCCCCCcEEeCCCCCCEEecC----CCcEEEeec
Q 042435          196 IYEY--MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHAL-SYLHHDCTPSIVHRDISSNNILLNS----NLEAFVADF  268 (412)
Q Consensus       196 v~ey--~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL-~~LH~~~~~~ivHrDlkp~NILl~~----~~~~kl~Df  268 (412)
                      |+||  +++|+|.+++.+..    ++..  ..++.+++.++ +|||++   +|+||||||+|||++.    +..++|+||
T Consensus        83 I~e~~G~~~~tL~~~l~~~~----~~e~--~~~~~~~L~~l~~yLh~~---~IvhrDlKp~NILl~~~~~~~~~~~LiDg  153 (210)
T PRK10345         83 IADFDGKPSITLTEFAEQCR----YEED--VAQLRQLLKKLKRYLLDN---RIVTMELKPQNILCQRISESEVIPVVCDN  153 (210)
T ss_pred             EecCCCCcchhHHHHHHccc----ccHh--HHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEeccCCCCCcEEEEEC
Confidence            8999  66899999996532    4444  35677888787 999999   9999999999999973    348999995


Q ss_pred             CCc
Q 042435          269 GTV  271 (412)
Q Consensus       269 Gla  271 (412)
                      +-+
T Consensus       154 ~G~  156 (210)
T PRK10345        154 IGE  156 (210)
T ss_pred             CCC
Confidence            444

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.59  E-value=2.4e-15  Score=154.26  Aligned_cols=119  Identities=20%  Similarity=0.313  Sum_probs=89.4

Q ss_pred             HHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEe-cc----------------------------CCccccceEEEec
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKK-LH----------------------------HSETEDSAFVVYS  189 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~-l~----------------------------~~~~~~~~~~~~~  189 (412)
                      ......|...+.||+|+||.||+|.+.+... ++|+ ..                            +.++.........
T Consensus       329 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~-v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~  407 (535)
T PRK09605        329 EEVKRRKIPDHLIGKGAEADIKKGEYLGRDA-VIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVD  407 (535)
T ss_pred             cccccccCccceeccCCcEEEEEEeecCccc-eeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEe
Confidence            3344556678899999999999998855443 3332 11                            1111222223444


Q ss_pred             CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      .+..++||||+++++|.+++.           ....++.+++++|.|||+.   +++|||+||+|||+ +++.++|+|||
T Consensus       408 ~~~~~lv~E~~~g~~L~~~l~-----------~~~~~~~~i~~~L~~lH~~---giiHrDlkp~NILl-~~~~~~liDFG  472 (535)
T PRK09605        408 PEEKTIVMEYIGGKDLKDVLE-----------GNPELVRKVGEIVAKLHKA---GIVHGDLTTSNFIV-RDDRLYLIDFG  472 (535)
T ss_pred             CCCCEEEEEecCCCcHHHHHH-----------HHHHHHHHHHHHHHHHHhC---CCccCCCChHHEEE-ECCcEEEEeCc
Confidence            566789999999999987664           3467899999999999998   99999999999999 57899999999


Q ss_pred             Cccc
Q 042435          270 TVRL  273 (412)
Q Consensus       270 la~~  273 (412)
                      +++.
T Consensus       473 la~~  476 (535)
T PRK09605        473 LGKY  476 (535)
T ss_pred             cccc
Confidence            9975

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=1.1e-14  Score=149.69  Aligned_cols=234  Identities=20%  Similarity=0.248  Sum_probs=161.5

Q ss_pred             hcCcccceeeeecCceEEEEEEeC--CCcEEEEEecc------------------------CCccccceEEEecCceEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP--DGKVVALKKLH------------------------HSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~--~~~~vAvK~l~------------------------~~~~~~~~~~~~~~~~~~l  195 (412)
                      ...|.+.+-||+|+|+.|-.....  ....+|+|.+.                        |.+...........+..++
T Consensus        19 ~~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~   98 (601)
T KOG0590|consen   19 NSQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLL   98 (601)
T ss_pred             cccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCccccc
Confidence            345666777999999999877552  34456666543                        3333333333455677899


Q ss_pred             EEEeccCCceeeee-ccCcccccCCHHHHHHHHHHHHHHHHHHH-hCCCCCcEEeCCCCCCEEecCCC-cEEEeecCCcc
Q 042435          196 IYEYMERGSLFCVL-RDDDEAIELNWTRRMNIVKSVAHALSYLH-HDCTPSIVHRDISSNNILLNSNL-EAFVADFGTVR  272 (412)
Q Consensus       196 v~ey~~~gsL~~~l-~~~~~~~~l~~~~~~~i~~~ia~gL~~LH-~~~~~~ivHrDlkp~NILl~~~~-~~kl~DfGla~  272 (412)
                      +.+|..+|++.+.+ .....  ..+....-.++.|+..++.|+| +.   ++.|||+||+|.+++..+ ..+++|||+|.
T Consensus        99 ~~~~s~g~~~f~~i~~~~~~--~~~~~~~~~~~~ql~s~l~~~H~~~---~~~h~~ikP~n~~l~~s~~~l~~~df~~At  173 (601)
T KOG0590|consen   99 SLSYSDGGSLFSKISHPDST--GTSSSSASRYLPQLNSGLSYLHPEN---GVTHRDIKPSNSLLDESGSALKIADFGLAT  173 (601)
T ss_pred             ccCcccccccccccccCCcc--CCCCcchhhhhhhhccCccccCccc---ccccCCCCCccchhccCCCcccCCCchhhc
Confidence            99999999999888 43321  2444556678999999999999 77   999999999999999999 99999999998


Q ss_pred             ccCC-CCC--Ccccccc-cccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhc
Q 042435          273 LLDV-DSS--NRTLQAG-TYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQR  347 (412)
Q Consensus       273 ~~~~-~~~--~~~~~~g-t~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~  347 (412)
                      .... ...  ......| ++.|+|||...+. ...+..|+||.|+++.-+++|..|++.......      ....+....
T Consensus       174 ~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~------~~~~~~~~~  247 (601)
T KOG0590|consen  174 AYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKDG------RYSSWKSNK  247 (601)
T ss_pred             cccccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccccccccc------cceeecccc
Confidence            7655 222  2244567 9999999999874 456789999999999999999999874321111      111111111


Q ss_pred             cCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          348 LSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..... .....-.....++..+++..+|+.|.+.+++-..
T Consensus       248 ~~~~~-~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~~~d  286 (601)
T KOG0590|consen  248 GRFTQ-LPWNSISDQAHDLLHKILKENPSNRLSIEELKLD  286 (601)
T ss_pred             ccccc-CccccCChhhhhcccccccCCchhcccccccccc
Confidence            00000 0001111235677788888999999998887543

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.43  E-value=1.9e-12  Score=109.26  Aligned_cols=116  Identities=20%  Similarity=0.163  Sum_probs=90.4

Q ss_pred             cceeeeecCceEEEEEEeCCCcEEEEEeccCCcc---------------------ccceEEEecCceEEEEEEeccCCce
Q 042435          147 IRYCIGTGGYDSVYKAELPDGKVVALKKLHHSET---------------------EDSAFVVYSPQCMFFIYEYMERGSL  205 (412)
Q Consensus       147 ~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~---------------------~~~~~~~~~~~~~~lv~ey~~~gsL  205 (412)
                      +.+.||+|.++.||++...+ ..+++|..+....                     ..........+..++++||++++++
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~~   80 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKD-EDYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGETL   80 (155)
T ss_pred             cceecccccccceEEEEecC-CeEEEEecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCeec
Confidence            35789999999999999854 7899998755431                     0011112233468999999988777


Q ss_pred             eeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          206 FCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       206 ~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ..+          ++.....++.+++++++++|.....+++|+|++|+||++++.+.++++|||.++.
T Consensus        81 ~~~----------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          81 DEV----------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             ccC----------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence            643          4566777899999999999986555799999999999999989999999998864

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.41  E-value=9e-13  Score=131.33  Aligned_cols=118  Identities=25%  Similarity=0.299  Sum_probs=88.0

Q ss_pred             eeeeecCceEEEEEEeCCCcEEEEEeccCCccccc----------------------e----------------------
Q 042435          149 YCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDS----------------------A----------------------  184 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~~~----------------------~----------------------  184 (412)
                      +.||+|++|.||+|++++|+.||||..+.. +...                      .                      
T Consensus       123 ~plasaSigQVh~A~l~~G~~VaVKv~rp~-i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       123 KPLAAASIAQVHRARLVDGKEVAVKVLRPG-IEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             cceeeeehhheEEEEecCCCEEEEEeeCCC-cHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            679999999999999999999999986432 1000                      0                      


Q ss_pred             -----------------EE-----E-ecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHH-HHHHHHhC
Q 042435          185 -----------------FV-----V-YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH-ALSYLHHD  240 (412)
Q Consensus       185 -----------------~~-----~-~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~-gL~~LH~~  240 (412)
                                       .+     + ......+|||||++|++|.++......  ..   .+..++..++. .+..+|..
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~--~~---~~~~ia~~~~~~~l~ql~~~  276 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEA--GL---DRKALAENLARSFLNQVLRD  276 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhc--CC---CHHHHHHHHHHHHHHHHHhC
Confidence                             00     0 012345799999999999887643211  12   23456666666 46788887


Q ss_pred             CCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       241 ~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                         +++|+|++|.||+++.+++++++|||++..+.
T Consensus       277 ---g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       277 ---GFFHADLHPGNIFVLKDGKIIALDFGIVGRLS  308 (437)
T ss_pred             ---CceeCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence               99999999999999999999999999998764

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.39  E-value=1.1e-12  Score=120.39  Aligned_cols=114  Identities=18%  Similarity=0.286  Sum_probs=83.6

Q ss_pred             ceeee-ecCceEEEEEEeCCCcEEEEEeccCCccc------------------------------------cceEEEe-c
Q 042435          148 RYCIG-TGGYDSVYKAELPDGKVVALKKLHHSETE------------------------------------DSAFVVY-S  189 (412)
Q Consensus       148 ~~~lG-~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~------------------------------------~~~~~~~-~  189 (412)
                      ...|| .||.|+||++... +..++||++...+..                                    ....... .
T Consensus        36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         36 ARVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             CceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            35788 8999999999884 778888877543210                                    0000011 1


Q ss_pred             Cc---eEEEEEEeccC-CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEE
Q 042435          190 PQ---CMFFIYEYMER-GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFV  265 (412)
Q Consensus       190 ~~---~~~lv~ey~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl  265 (412)
                      ..   ..++|+||+++ .+|.+++...    .++..    .+.+++.++.+||+.   ||+||||||.|||++.++.++|
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l~~~----~l~~~----~~~~i~~~l~~lH~~---GI~HrDlkp~NILv~~~~~v~L  183 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALLQEA----PLSEE----QWQAIGQLIARFHDA---GVYHADLNAHNILLDPDGKFWL  183 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHHhcC----CCCHH----HHHHHHHHHHHHHHC---CCCCCCCCchhEEEcCCCCEEE
Confidence            11   23599999997 6888777543    24433    357899999999999   9999999999999998889999


Q ss_pred             eecCCccc
Q 042435          266 ADFGTVRL  273 (412)
Q Consensus       266 ~DfGla~~  273 (412)
                      +|||.++.
T Consensus       184 IDfg~~~~  191 (239)
T PRK01723        184 IDFDRGEL  191 (239)
T ss_pred             EECCCccc
Confidence            99998875

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.27  E-value=4.3e-12  Score=116.47  Aligned_cols=183  Identities=21%  Similarity=0.270  Sum_probs=123.0

Q ss_pred             CceEEEEEEeccCCceeeeeccCcc-cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeec
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDE-AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADF  268 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~Df  268 (412)
                      .....++.|||..|++..+|+.... ...+....-.+++.||..||.|||+. .|+|+|+++..+-|++..++-+|+.- 
T Consensus       144 ~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~-~PpiihgnlTc~tifiq~ngLIkig~-  221 (458)
T KOG1266|consen  144 KPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSC-DPPIIHGNLTCDTIFIQHNGLIKIGS-  221 (458)
T ss_pred             ccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhcc-CCccccCCcchhheeecCCceEEecc-
Confidence            3456789999999999999986542 23455556678999999999999985 88999999999999999888777642 


Q ss_pred             CCccccCCC-----CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCC-cccccccccCCCCcchhhH
Q 042435          269 GTVRLLDVD-----SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP-GELLLSLSSSSGPKIMLID  342 (412)
Q Consensus       269 Gla~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P-~~~~~~~~~~~~~~~~~~~  342 (412)
                      +-.......     ........+-++|.+||+-.....+.++|||+||...+||..+..- .....    ....+.....
T Consensus       222 ~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemailEiq~tnseS----~~~~ee~ia~  297 (458)
T KOG1266|consen  222 VAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAILEIQSTNSES----KVEVEENIAN  297 (458)
T ss_pred             cCccccchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHHheeccCCCcc----eeehhhhhhh
Confidence            111111110     1111233467899999988777778899999999999999877532 11000    0001111111


Q ss_pred             HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                      .+.. +..+.          -.+++..|++..|..||+|.+++.|.-
T Consensus       298 ~i~~-len~l----------qr~~i~kcl~~eP~~rp~ar~llfHpl  333 (458)
T KOG1266|consen  298 VIIG-LENGL----------QRGSITKCLEGEPNGRPDARLLLFHPL  333 (458)
T ss_pred             heee-ccCcc----------ccCcCcccccCCCCCCcchhhhhcCce
Confidence            1111 11000          124567899999999999999887653

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=1.5e-11  Score=121.69  Aligned_cols=225  Identities=24%  Similarity=0.224  Sum_probs=150.8

Q ss_pred             cccceeeee--cCceEEEEEEe---CCCcEEEEEeccCC------------------------ccccceEEEecCceEEE
Q 042435          145 FHIRYCIGT--GGYDSVYKAEL---PDGKVVALKKLHHS------------------------ETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       145 f~~~~~lG~--G~~g~Vy~~~~---~~~~~vAvK~l~~~------------------------~~~~~~~~~~~~~~~~l  195 (412)
                      |.+...+|.  |.+|.||.+..   .++..+|+|+=+++                        +...........+..++
T Consensus       116 ~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lfi  195 (524)
T KOG0601|consen  116 FPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILFI  195 (524)
T ss_pred             cccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCccee
Confidence            555678999  99999999976   46888999973322                        22222223556677888


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHH----HHHHHHhCCCCCcEEeCCCCCCEEecCC-CcEEEeecCC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH----ALSYLHHDCTPSIVHRDISSNNILLNSN-LEAFVADFGT  270 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~----gL~~LH~~~~~~ivHrDlkp~NILl~~~-~~~kl~DfGl  270 (412)
                      -+|++. .+|..+.+....  .++.........+...    ||.++|+.   +++|-|+||.||+...+ ...+++|||+
T Consensus       196 qtE~~~-~sl~~~~~~~~~--~~p~~~l~~~~~~~~~~~~~al~~~hs~---~~~~~~~kp~~i~~~~~~~s~~~~df~~  269 (524)
T KOG0601|consen  196 QTELCG-ESLQSYCHTPCN--FLPDNLLWNSLRDWLSRDVTALSHLHSN---NIVHDDLKPANIFTTSDWTSCKLTDFGL  269 (524)
T ss_pred             eecccc-chhHHhhhcccc--cCCchhhhhHHhhhhhcccccccccCCC---cccccccchhheecccccceeecCCcce
Confidence            899885 577776655432  2444445555556556    99999988   99999999999999998 8899999999


Q ss_pred             ccccCCCCCCc-----ccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhh
Q 042435          271 VRLLDVDSSNR-----TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY  345 (412)
Q Consensus       271 a~~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~  345 (412)
                      ...+....-..     ....|...|++||... ..++..+|+||+|.+..|..++..+...........     +.... 
T Consensus       270 v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~-~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~-----~r~~~-  342 (524)
T KOG0601|consen  270 VSKISDGNFSSVFKVSKRPEGDCIYAAKELLN-GLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQ-----LRQGY-  342 (524)
T ss_pred             eEEccCCccccceeeeecCCCCceEeChhhhc-cccchHhhhcchhhhhHhhHhhcccccCCCCCCccc-----ccccc-
Confidence            98776543222     2225777899999874 467889999999999999999876644220000000     00000 


Q ss_pred             hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                        +..+   ....-...+...+..+++.+|..|++...+.++
T Consensus       343 --ip~e---~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l  379 (524)
T KOG0601|consen  343 --IPLE---FCEGGSSSLRSVTSQMLDEDPRLRLTAQILTAL  379 (524)
T ss_pred             --Cchh---hhcCcchhhhhHHHHhcCcchhhhhHHHHHhcc
Confidence              1110   010111123447778999999999988877543

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.20  E-value=1.5e-11  Score=124.33  Aligned_cols=124  Identities=21%  Similarity=0.227  Sum_probs=81.7

Q ss_pred             hcCcccceeeeecCceEEEEEEeCC-CcEEEEEeccCCccc------------------------cc--e-----E----
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPD-GKVVALKKLHHSETE------------------------DS--A-----F----  185 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~-~~~vAvK~l~~~~~~------------------------~~--~-----~----  185 (412)
                      -..|+. +.||+|++|.||+|++++ |+.||||..+..-..                        ..  .     +    
T Consensus       119 F~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l  197 (537)
T PRK04750        119 FDDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTL  197 (537)
T ss_pred             HHhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHH
Confidence            345776 789999999999999987 999999987632100                        00  0     0    


Q ss_pred             ------------------EEec-------------CceEEEEEEeccCCceeee--eccCcccccCCHHHHHHHHHHHHH
Q 042435          186 ------------------VVYS-------------PQCMFFIYEYMERGSLFCV--LRDDDEAIELNWTRRMNIVKSVAH  232 (412)
Q Consensus       186 ------------------~~~~-------------~~~~~lv~ey~~~gsL~~~--l~~~~~~~~l~~~~~~~i~~~ia~  232 (412)
                                        .+..             ....+|||||++|+++.++  +...+    .+.   ..++...+.
T Consensus       198 ~~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g----~d~---~~la~~~v~  270 (537)
T PRK04750        198 HDELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAG----TDM---KLLAERGVE  270 (537)
T ss_pred             HHhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcC----CCH---HHHHHHHHH
Confidence                              0111             2234699999999999764  22211    111   112222211


Q ss_pred             -HHHHHHhCCCCCcEEeCCCCCCEEecCCC----cEEEeecCCccccCC
Q 042435          233 -ALSYLHHDCTPSIVHRDISSNNILLNSNL----EAFVADFGTVRLLDV  276 (412)
Q Consensus       233 -gL~~LH~~~~~~ivHrDlkp~NILl~~~~----~~kl~DfGla~~~~~  276 (412)
                       -+.-++..   |++|+|+||.||+++.++    ++++.|||++..++.
T Consensus       271 ~~~~Qif~~---GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~  316 (537)
T PRK04750        271 VFFTQVFRD---GFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNK  316 (537)
T ss_pred             HHHHHHHhC---CeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCH
Confidence             12223345   999999999999999887    999999999987643

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.10  E-value=3.3e-10  Score=98.15  Aligned_cols=112  Identities=17%  Similarity=0.263  Sum_probs=80.4

Q ss_pred             eeeeecCceEEEEEEeCCCcEEEEEeccCCcc--cc-----------------ceEEEecCceEEEEEEeccCCceeeee
Q 042435          149 YCIGTGGYDSVYKAELPDGKVVALKKLHHSET--ED-----------------SAFVVYSPQCMFFIYEYMERGSLFCVL  209 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~--~~-----------------~~~~~~~~~~~~lv~ey~~~gsL~~~l  209 (412)
                      +.++.|.++.||++... ++.+++|.......  ..                 ...........++||||+++.++.+.-
T Consensus         4 ~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~~~~~~lv~e~i~G~~l~~~~   82 (170)
T cd05151           4 SPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFDPETGVLITEFIEGSELLTED   82 (170)
T ss_pred             eecCCcccCceEEEEEC-CeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEeCCCCeEEEEecCCCcccccc
Confidence            56889999999999874 77899998654321  00                 011122333468999999998876430


Q ss_pred             ccCcccccCCHHHHHHHHHHHHHHHHHHHhCC--CCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          210 RDDDEAIELNWTRRMNIVKSVAHALSYLHHDC--TPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       210 ~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~--~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                              .   ....++.+++++|+.||+..  ...++|+|++|.||+++ ++.++++||+.+..
T Consensus        83 --------~---~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          83 --------F---SDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             --------c---cCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence                    0   11235678999999999872  22369999999999999 66899999998763

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.07  E-value=7.8e-10  Score=97.61  Aligned_cols=118  Identities=20%  Similarity=0.215  Sum_probs=81.1

Q ss_pred             eeeeecCceEEEEEEeCC-------CcEEEEEeccCCcc------------ccce--EE---------------------
Q 042435          149 YCIGTGGYDSVYKAELPD-------GKVVALKKLHHSET------------EDSA--FV---------------------  186 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~-------~~~vAvK~l~~~~~------------~~~~--~~---------------------  186 (412)
                      ..||.|.-+.||.|...+       +..+|||..+....            .+..  ..                     
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999997643       57999996542110            0000  00                     


Q ss_pred             ----------EecCceEEEEEEeccCCceee-eeccCcccccCCHHHHHHHHHHHHHHHHHH-HhCCCCCcEEeCCCCCC
Q 042435          187 ----------VYSPQCMFFIYEYMERGSLFC-VLRDDDEAIELNWTRRMNIVKSVAHALSYL-HHDCTPSIVHRDISSNN  254 (412)
Q Consensus       187 ----------~~~~~~~~lv~ey~~~gsL~~-~l~~~~~~~~l~~~~~~~i~~~ia~gL~~L-H~~~~~~ivHrDlkp~N  254 (412)
                                ...-...++||||+.++.+.. .+++.    .++..+...+..+++.+|..+ |..   +++|+||++.|
T Consensus        83 l~~~Gv~vP~pi~~~~~~lvME~Ig~~~~~~~~Lkd~----~~~~~~~~~i~~~i~~~l~~l~H~~---glVHGDLs~~N  155 (197)
T cd05146          83 MQKAGIPCPEVVVLKKHVLVMSFIGDDQVPAPKLKDA----KLNDEEMKNAYYQVLSMMKQLYKEC---NLVHADLSEYN  155 (197)
T ss_pred             HHHcCCCCCeEEEecCCEEEEEEcCCCCccchhhhcc----ccCHHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHH
Confidence                      111244589999997654422 22221    244455667789999999999 777   99999999999


Q ss_pred             EEecCCCcEEEeecCCcccc
Q 042435          255 ILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       255 ILl~~~~~~kl~DfGla~~~  274 (412)
                      |+++ ++.+.++|||.+-..
T Consensus       156 IL~~-~~~v~iIDF~qav~~  174 (197)
T cd05146         156 MLWH-DGKVWFIDVSQSVEP  174 (197)
T ss_pred             EEEE-CCcEEEEECCCceeC
Confidence            9997 468999999987643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.06  E-value=7.3e-11  Score=116.79  Aligned_cols=229  Identities=20%  Similarity=0.194  Sum_probs=153.2

Q ss_pred             HHhhcCcccceeeeecCceEEEEEEe--CCCcEEEEEeccCCcc------------------------ccceEEEecCce
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAEL--PDGKVVALKKLHHSET------------------------EDSAFVVYSPQC  192 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~~--~~~~~vAvK~l~~~~~------------------------~~~~~~~~~~~~  192 (412)
                      ...+.+|.....||.|.|+.||+...  .++..+++|.+...-.                        ............
T Consensus       261 s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~  340 (524)
T KOG0601|consen  261 SCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQ  340 (524)
T ss_pred             eeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCcccccc
Confidence            34456788999999999999999854  4688999996643211                        111111233445


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC-CcEEEeecCCc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN-LEAFVADFGTV  271 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~-~~~kl~DfGla  271 (412)
                      .|+-.|||+++++.....   -...++...++++..|++.++.++|+.   .++|+|+||+||++..+ +..++.|||.+
T Consensus       341 ~~ip~e~~~~~s~~l~~~---~~~~~d~~~~~~~~~q~~~~l~~i~s~---~~~~~d~~psni~i~~~~~~~~~~~~~~~  414 (524)
T KOG0601|consen  341 GYIPLEFCEGGSSSLRSV---TSQMLDEDPRLRLTAQILTALNVIHSK---LFVHLDVKPSNILISNDGFFSKLGDFGCW  414 (524)
T ss_pred             ccCchhhhcCcchhhhhH---HHHhcCcchhhhhHHHHHhccccccch---hhhcccccccceeeccchhhhhccccccc
Confidence            678889999988765442   122477778889999999999999988   99999999999999876 78889999998


Q ss_pred             cccCCCCCCccccccccccc--ccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          272 RLLDVDSSNRTLQAGTYGYI--ALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       272 ~~~~~~~~~~~~~~gt~~y~--aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      +.+....   ......-++.  +++......+..+.|++|||..+.|.+++..--...          .....+ .....
T Consensus       415 t~~~~~~---~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~----------~~~~~i-~~~~~  480 (524)
T KOG0601|consen  415 TRLAFSS---GVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESG----------VQSLTI-RSGDT  480 (524)
T ss_pred             cccceec---ccccccccccccchhhccccccccccccccccccccccccCcccCccc----------ccceee-ecccc
Confidence            6432111   1112223333  555555667888999999999999999987432110          001111 11111


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      +..+...    ..+..+...+...++..||.+.+...+.+-.
T Consensus       481 p~~~~~~----~~~q~~~kv~~~~~~~~~~l~~~l~~~~~~~  518 (524)
T KOG0601|consen  481 PNLPGLK----LQLQVLLKVMINPDRKRRPSAVELSLHSEFY  518 (524)
T ss_pred             cCCCchH----HhhhhhhhhhcCCccccchhhhhhcccchhh
Confidence            1111111    2255677788899999999998887665543

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.99  E-value=1.4e-10  Score=120.91  Aligned_cols=227  Identities=20%  Similarity=0.228  Sum_probs=149.3

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEeccC---------------Cccc---cceEE------EecCceEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHH---------------SETE---DSAFV------VYSPQCMFF  195 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~---------------~~~~---~~~~~------~~~~~~~~l  195 (412)
                      ..++|.+.+-+-+|.++.++.+.-. .|...+.|....               .++.   ..-++      .......+|
T Consensus       802 S~d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~~L  881 (1205)
T KOG0606|consen  802 SPDGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPCRSPLPL  881 (1205)
T ss_pred             CCccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCCCCCcch
Confidence            4466777778889999999887432 233333332110               1110   01111      123456789


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      +++|..+++|...|+....   .+..-.......+..+++|||..   .+.|+|++|.|++...++..+++|||......
T Consensus       882 ~~~~~~~~~~~Skl~~~~~---~saepaRs~i~~~vqs~e~L~s~---~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg  955 (1205)
T KOG0606|consen  882 VGHYLNGGDLPSKLHNSGC---LSAEPARSPILERVQSLESLHSS---LRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVG  955 (1205)
T ss_pred             hhHHhccCCchhhhhcCCC---cccccccchhHHHHhhhhccccc---hhhcccccccchhhcccCCcccCccccccccc
Confidence            9999999999998887652   23223334556677899999987   79999999999999999999999998432210


Q ss_pred             C---------------------C-----C-----CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCc
Q 042435          276 V---------------------D-----S-----SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPG  324 (412)
Q Consensus       276 ~---------------------~-----~-----~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~  324 (412)
                      .                     .     .     .......||+.|.+||...+......+|.|++|++++|.++|..||
T Consensus       956 ~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~ 1035 (1205)
T KOG0606|consen  956 LIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPF 1035 (1205)
T ss_pred             cccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCC
Confidence            0                     0     0     0012346899999999999999999999999999999999999998


Q ss_pred             ccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHH
Q 042435          325 ELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQ  382 (412)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~  382 (412)
                      ...       .++..+..+....+..+  ....+....+.+++...+..+|.+|-.+.
T Consensus      1036 na~-------tpq~~f~ni~~~~~~~p--~g~~~~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1036 NAE-------TPQQIFENILNRDIPWP--EGPEEGSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             CCc-------chhhhhhccccCCCCCC--CCccccChhhhhhhhhhhccCchhccCcc
Confidence            732       22223333333332222  11222223356677778888888886655

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.93  E-value=3.3e-09  Score=90.88  Aligned_cols=109  Identities=24%  Similarity=0.425  Sum_probs=81.9

Q ss_pred             eeeecCceEEEEEEeCCCcEEEEEe-----ccCCcccc------------------------ceEEEecCceEEEEEEec
Q 042435          150 CIGTGGYDSVYKAELPDGKVVALKK-----LHHSETED------------------------SAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       150 ~lG~G~~g~Vy~~~~~~~~~vAvK~-----l~~~~~~~------------------------~~~~~~~~~~~~lv~ey~  200 (412)
                      .+++|+-+.+|.+.+.+ ..+++|.     .+|+.+..                        ......+++...|+|||.
T Consensus         3 ~i~~GAEa~i~~~~~~g-~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~I   81 (204)
T COG3642           3 LIKQGAEAIIYLTDFLG-LPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEYI   81 (204)
T ss_pred             hhhCCcceeEEeeeccC-cceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEEe
Confidence            57899999999998744 4466662     23332221                        122355677788999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ++-.|.+.+...          +..++..+-.-+.-||..   +|+|+||.++||++.++. +.++|||++..
T Consensus        82 ~G~~lkd~l~~~----------~~~~~r~vG~~vg~lH~~---givHGDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642          82 EGELLKDALEEA----------RPDLLREVGRLVGKLHKA---GIVHGDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             CChhHHHHHHhc----------chHHHHHHHHHHHHHHhc---CeecCCCccceEEEeCCc-EEEEECCcccc
Confidence            988888777543          245677788888999999   999999999999998654 99999999874

>PLN03150 hypothetical protein; Provisional

Probab=98.90  E-value=1.6e-09  Score=112.96  Aligned_cols=67  Identities=27%  Similarity=0.391  Sum_probs=51.5

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCCCc---CC-CCcccccCcCCCCCCCCCCccc
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTYLR---DN-PPKSFVGNKGLCGHVQGFLSCF   70 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~~~---~~-~~~~~~gn~~lcg~~~~~~~c~   70 (412)
                      ..|++|||+.| ++|.+|+ +.++++|+.||||+|+|+|.+|..+.   .+ ....+.+|+++||.+. +..|.
T Consensus       466 ~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~-l~~C~  538 (623)
T PLN03150        466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG-LRACG  538 (623)
T ss_pred             CCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC-CCCCc
Confidence            46788888888 8888877 78888888888888888888887322   22 4567889999998653 46685

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.87  E-value=1.3e-08  Score=102.07  Aligned_cols=161  Identities=19%  Similarity=0.208  Sum_probs=116.8

Q ss_pred             eeeecCceEEEEEEeCCCcEE-----E---EEeccCCccccceEEEecCceEEEEEEeccCCceeeeeccCcccccCCHH
Q 042435          150 CIGTGGYDSVYKAELPDGKVV-----A---LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWT  221 (412)
Q Consensus       150 ~lG~G~~g~Vy~~~~~~~~~v-----A---vK~l~~~~~~~~~~~~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~  221 (412)
                      .-..|++-.||.....+++.+     |   +|.++|+++.............|||+|-+.  .|..++.+      +...
T Consensus        33 ~k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~------l~~~  104 (690)
T KOG1243|consen   33 RKADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKE------LGKE  104 (690)
T ss_pred             eeccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHH------hHHH
Confidence            445688889999888777322     2   567899999998888888889999999874  45555543      2234


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcccccccccccccccccCccc
Q 042435          222 RRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVV  301 (412)
Q Consensus       222 ~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  301 (412)
                      ....-+.||+.||.|||+.|  +++|++|.-+.|+++..|+-||++|-++...............-..|..|+.+.... 
T Consensus       105 ~v~~Gl~qIl~AL~FL~~d~--~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~~~s~-  181 (690)
T KOG1243|consen  105 EVCLGLFQILAALSFLNDDC--NLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEIDPSE-  181 (690)
T ss_pred             HHHHHHHHHHHHHHHHhccC--CeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhcCccc-
Confidence            45557899999999999876  899999999999999999999999987754332221111111122355665443222 


Q ss_pred             CcccccHHHHHHHHHHHhCCC
Q 042435          302 TEKCVIYSFGVVALEVLMGTH  322 (412)
Q Consensus       302 s~ksDv~S~Gvil~elltg~~  322 (412)
                       -..|.|-||++++|++.|..
T Consensus       182 -~s~D~~~Lg~li~el~ng~~  201 (690)
T KOG1243|consen  182 -WSIDSWGLGCLIEELFNGSL  201 (690)
T ss_pred             -cchhhhhHHHHHHHHhCccc
Confidence             24699999999999999943

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.85  E-value=1.2e-08  Score=87.21  Aligned_cols=122  Identities=17%  Similarity=0.311  Sum_probs=87.8

Q ss_pred             cceeeeecCceEEEEEEeCCCcEEEEE-----eccCCccccc------------------------eEEEecCceEEEEE
Q 042435          147 IRYCIGTGGYDSVYKAELPDGKVVALK-----KLHHSETEDS------------------------AFVVYSPQCMFFIY  197 (412)
Q Consensus       147 ~~~~lG~G~~g~Vy~~~~~~~~~vAvK-----~l~~~~~~~~------------------------~~~~~~~~~~~lv~  197 (412)
                      ....+-+|+-+.|+++.+ .|+...||     +.+||.....                        ..++.+...-.|+|
T Consensus        11 ~l~likQGAEArv~~~~~-~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~M   89 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSF-SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYM   89 (229)
T ss_pred             cceeeeccceeeEeeecc-CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEE
Confidence            457899999999999998 57776666     3455543321                        12244566678999


Q ss_pred             EeccC-CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC---CcEEEeecCCccc
Q 042435          198 EYMER-GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN---LEAFVADFGTVRL  273 (412)
Q Consensus       198 ey~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~---~~~kl~DfGla~~  273 (412)
                      ||.++ .++.+++....... ........++..|-+.+.-||.+   .|+|+||..+||++..+   ..+.++|||++..
T Consensus        90 E~~~g~~~vk~~i~~~~~~~-~~d~~~~~~~~~iG~~igklH~n---diiHGDLTTSNill~~~~~~~~~~lIdfgls~~  165 (229)
T KOG3087|consen   90 EFIDGASTVKDFILSTMEDE-SEDEGLAELARRIGELIGKLHDN---DIIHGDLTTSNILLRSDGNQITPILIDFGLSSV  165 (229)
T ss_pred             EeccchhHHHHHHHHHccCc-ccchhHHHHHHHHHHHHHHhhhC---CeecccccccceEEecCCCcCceEEEeecchhc
Confidence            99976 36777766543221 22223367888899999999999   99999999999999544   4468999999863

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.81  E-value=7.5e-08  Score=86.96  Aligned_cols=121  Identities=21%  Similarity=0.259  Sum_probs=88.9

Q ss_pred             eeeeecCceEEEEEEeCCCcEEEEEeccCCccc------------------------cceEEEecC---ceEEEEEEecc
Q 042435          149 YCIGTGGYDSVYKAELPDGKVVALKKLHHSETE------------------------DSAFVVYSP---QCMFFIYEYME  201 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~------------------------~~~~~~~~~---~~~~lv~ey~~  201 (412)
                      +.|+.|..+.||++...+|+.+++|........                        .........   +..++||||++
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~   83 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD   83 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence            568999999999998877789999986543210                        001111111   25689999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCC----------------------------------------
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC----------------------------------------  241 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~----------------------------------------  241 (412)
                      +.++.+.+...    .++..++..++.+++++|..||+..                                        
T Consensus        84 G~~l~~~~~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (223)
T cd05154          84 GRVLRDRLLRP----ELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMER  159 (223)
T ss_pred             CEecCCCCCCC----CCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHH
Confidence            98887765321    3677778888889999998888531                                        


Q ss_pred             -------------CCCcEEeCCCCCCEEecC--CCcEEEeecCCccc
Q 042435          242 -------------TPSIVHRDISSNNILLNS--NLEAFVADFGTVRL  273 (412)
Q Consensus       242 -------------~~~ivHrDlkp~NILl~~--~~~~kl~DfGla~~  273 (412)
                                   ...++|+|++|.||+++.  +..+.++||+.+..
T Consensus       160 ~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         160 LLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             HHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence                         235799999999999998  56688999998763

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.78  E-value=8.1e-08  Score=91.70  Aligned_cols=197  Identities=15%  Similarity=0.231  Sum_probs=127.2

Q ss_pred             EEEEEEeccCC-ceeeeeccC---cccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeec
Q 042435          193 MFFIYEYMERG-SLFCVLRDD---DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADF  268 (412)
Q Consensus       193 ~~lv~ey~~~g-sL~~~l~~~---~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~Df  268 (412)
                      .-+.|..+++- -...+++..   ......+|...++.+..+|.+.+-||++   |.+-+|++++|+|++++..+.+.|-
T Consensus        85 iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~---Gh~vGDVn~~~~lVsd~~~V~LVds  161 (637)
T COG4248          85 IGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEH---GHVVGDVNQNSFLVSDDSKVVLVDS  161 (637)
T ss_pred             eEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhc---CCcccccCccceeeecCceEEEEcc
Confidence            45666666542 122333221   1223589999999999999999999999   9999999999999999999999874


Q ss_pred             CCccccCCCCCCccccccccccccccccc-----CcccCcccccHHHHHHHHHHHhC-CCCcccccccccCCCCcc-hh-
Q 042435          269 GTVRLLDVDSSNRTLQAGTYGYIALELVY-----TMVVTEKCVIYSFGVVALEVLMG-THPGELLLSLSSSSGPKI-ML-  340 (412)
Q Consensus       269 Gla~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~s~ksDv~S~Gvil~elltg-~~P~~~~~~~~~~~~~~~-~~-  340 (412)
                      ..-.. ..+.......+|...|.+||...     +-.-+...|-|.+||++++++.| +.||..+........+-+ .+ 
T Consensus       162 Dsfqi-~~ng~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~~~~ap~p~E~~Ia  240 (637)
T COG4248         162 DSFQI-NANGTLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPLISDAPNPLETDIA  240 (637)
T ss_pred             cceee-ccCCceEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccccCCCCCcchhhhh
Confidence            32221 12233334567889999999765     33456789999999999999886 999986543322222111 00 


Q ss_pred             ----hHHhh--hcc-CCccchhhHHHHHHHHHHHHhcCcCC--CCCCCCHHHHHHHHhcCCC
Q 042435          341 ----IDILY--QRL-SPPINQKIIQDIILVSTIALACLRSK--PKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       341 ----~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~Cl~~d--P~~RPs~~evl~~L~~~~~  393 (412)
                          ...-+  ... +++......-....+..+..+|+...  +.-|||++..+..|.+..+
T Consensus       241 ~g~f~ya~~~~~g~~p~P~~~P~~~Lpp~vqAlF~qaF~~~~~~~~RP~a~aW~aAl~al~~  302 (637)
T COG4248         241 HGRFAYASDQRRGLKPPPRSIPLSMLPPDVQALFQQAFTESGVATPRPTAKAWVAALDALRQ  302 (637)
T ss_pred             cceeeechhccCCCCCCCCCCChhhcCHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHHH
Confidence                01111  111 11111111112233666777888643  5689999999998876654

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.66  E-value=4.8e-08  Score=85.87  Aligned_cols=74  Identities=26%  Similarity=0.417  Sum_probs=48.0

Q ss_pred             eEEEEEEecc--CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHH-HhCCCCCcEEeCCCCCCEEecCCCcEEEeec
Q 042435          192 CMFFIYEYME--RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL-HHDCTPSIVHRDISSNNILLNSNLEAFVADF  268 (412)
Q Consensus       192 ~~~lv~ey~~--~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~L-H~~~~~~ivHrDlkp~NILl~~~~~~kl~Df  268 (412)
                      ...|||||++  +..+. .+....    ++......++.+++..+..+ |..   +|+|+||.+.||+++++ .+.++||
T Consensus        80 ~~~ivME~I~~~G~~~~-~l~~~~----~~~~~~~~~~~~il~~~~~~~~~~---givHGDLs~~NIlv~~~-~~~iIDf  150 (188)
T PF01163_consen   80 RNVIVMEYIGEDGVPLP-RLKDVD----LSPEEPKELLEEILEEIIKMLHKA---GIVHGDLSEYNILVDDG-KVYIIDF  150 (188)
T ss_dssp             TTEEEEE--EETTEEGG-CHHHCG----GGGSTHHHHHHHHHHHHHHHHHCT---TEEESS-STTSEEEETT-CEEE--G
T ss_pred             CCEEEEEecCCCccchh-hHHhcc----ccchhHHHHHHHHHHHHHHHHHhc---CceecCCChhhEEeecc-eEEEEec
Confidence            3479999998  43333 333221    22344556778888866664 666   99999999999999887 9999999


Q ss_pred             CCcccc
Q 042435          269 GTVRLL  274 (412)
Q Consensus       269 Gla~~~  274 (412)
                      |.+...
T Consensus       151 ~qav~~  156 (188)
T PF01163_consen  151 GQAVDS  156 (188)
T ss_dssp             TTEEET
T ss_pred             Ccceec
Confidence            987643

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.63  E-value=1.1e-08  Score=102.99  Aligned_cols=150  Identities=20%  Similarity=0.200  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC---------ccccccccccccccccc
Q 042435          227 VKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN---------RTLQAGTYGYIALELVY  297 (412)
Q Consensus       227 ~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~---------~~~~~gt~~y~aPE~~~  297 (412)
                      +.+++.|+.|+|..  .++||++|.|++|.++..+..||+.|+++-........         .....-...|.|||++.
T Consensus       105 l~~v~dgl~flh~s--Ak~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~  182 (700)
T KOG2137|consen  105 LGNVADGLAFLHRS--AKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLL  182 (700)
T ss_pred             hhcccchhhhhccC--cceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhc
Confidence            34566999999976  48999999999999999999999999987544331111         01123356799999999


Q ss_pred             CcccCcccccHHHHHHHHHHHhCCCC-cccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCC
Q 042435          298 TMVVTEKCVIYSFGVVALEVLMGTHP-GELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPK  376 (412)
Q Consensus       298 ~~~~s~ksDv~S~Gvil~elltg~~P-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~  376 (412)
                      ....+.++|+||+|+++|-+..|..+ +.......... ......+.-........       ..++.+=+.+.+..++.
T Consensus       183 ~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~-~~~~~~~~~~~~~s~~~-------p~el~~~l~k~l~~~~~  254 (700)
T KOG2137|consen  183 GTTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYS-FSRNLLNAGAFGYSNNL-------PSELRESLKKLLNGDSA  254 (700)
T ss_pred             cccccccccceeeeeEEEEEecCCcchhhccCCcchhh-hhhcccccccccccccC-------cHHHHHHHHHHhcCCcc
Confidence            98889999999999999999854443 32110000000 00000000000111111       12255566788999999


Q ss_pred             CCCCHHHHHH
Q 042435          377 SRPTMQRISQ  386 (412)
Q Consensus       377 ~RPs~~evl~  386 (412)
                      -||++.++..
T Consensus       255 ~rp~~~~l~~  264 (700)
T KOG2137|consen  255 VRPTLDLLLS  264 (700)
T ss_pred             cCcchhhhhc
Confidence            9997776643

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.54  E-value=3.8e-07  Score=82.92  Aligned_cols=116  Identities=25%  Similarity=0.263  Sum_probs=78.1

Q ss_pred             cccceeeeecCceEEEEEEeCCCcEEEEEeccCCccc-------------cceEE-------------------------
Q 042435          145 FHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETE-------------DSAFV-------------------------  186 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~-------------~~~~~-------------------------  186 (412)
                      ..+++.||-|.-+.||.|..+.|..+|||.=+.....             .....                         
T Consensus        93 e~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~~  172 (304)
T COG0478          93 EAIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVK  172 (304)
T ss_pred             HhhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCCC
Confidence            4566899999999999999999999999953221000             00000                         


Q ss_pred             ---EecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcE
Q 042435          187 ---VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEA  263 (412)
Q Consensus       187 ---~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~  263 (412)
                         ....+...+||||.++-.|...-        ++-...-.++..|..-+.-.-..   |+||+|+++=||++++++.+
T Consensus       173 VP~P~~~nRHaVvMe~ieG~eL~~~r--------~~~en~~~il~~il~~~~~~~~~---GiVHGDlSefNIlV~~dg~~  241 (304)
T COG0478         173 VPKPIAWNRHAVVMEYIEGVELYRLR--------LDVENPDEILDKILEEVRKAYRR---GIVHGDLSEFNILVTEDGDI  241 (304)
T ss_pred             CCCccccccceeeeehcccceeeccc--------CcccCHHHHHHHHHHHHHHHHHc---CccccCCchheEEEecCCCE
Confidence               12345678999999886665432        11222223444444444433345   99999999999999999999


Q ss_pred             EEeecCCc
Q 042435          264 FVADFGTV  271 (412)
Q Consensus       264 kl~DfGla  271 (412)
                      .++||--+
T Consensus       242 ~vIDwPQ~  249 (304)
T COG0478         242 VVIDWPQA  249 (304)
T ss_pred             EEEeCccc
Confidence            99999544

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.45  E-value=7.2e-07  Score=89.99  Aligned_cols=123  Identities=23%  Similarity=0.276  Sum_probs=83.5

Q ss_pred             CcccceeeeecCceEEEEEEeCCCcEEEEEeccCCccccc---------------------------e------------
Q 042435          144 YFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDS---------------------------A------------  184 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~~~---------------------------~------------  184 (412)
                      .|+. +-|+.++-|.||+|++++|+.||||..+.. +...                           .            
T Consensus       127 eF~~-~PiAsASIaQVH~A~L~sG~~VAVKVqrPg-i~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~  204 (517)
T COG0661         127 EFEP-EPIASASIAQVHRAVLKSGEEVAVKVQRPG-IRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLRE  204 (517)
T ss_pred             HcCC-CchhhhhHhhheeEEecCCCEEEEEecCCC-hHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHH
Confidence            3443 678999999999999999999999975421 1000                           0            


Q ss_pred             ---------------------------EEEe-cCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHH-HH
Q 042435          185 ---------------------------FVVY-SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHA-LS  235 (412)
Q Consensus       185 ---------------------------~~~~-~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~g-L~  235 (412)
                                                 .++. -.....|+|||++|-.+.+...-...  ..+   +..++..++++ +.
T Consensus       205 ElDy~~EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~--g~d---~k~ia~~~~~~f~~  279 (517)
T COG0661         205 ELDYRREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSA--GID---RKELAELLVRAFLR  279 (517)
T ss_pred             HhCHHHHHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhc--CCC---HHHHHHHHHHHHHH
Confidence                                       0011 13456899999999888877422211  133   22344443333 23


Q ss_pred             HHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          236 YLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       236 ~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      .+-..   +++|.|..|.||+++.+++..+.|||+...+..
T Consensus       280 q~~~d---gffHaDpHpGNi~v~~~g~i~~lDfGi~g~l~~  317 (517)
T COG0661         280 QLLRD---GFFHADPHPGNILVRSDGRIVLLDFGIVGRLDP  317 (517)
T ss_pred             HHHhc---CccccCCCccceEEecCCcEEEEcCcceecCCH
Confidence            33334   899999999999999999999999999887654

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.37  E-value=5.7e-07  Score=83.74  Aligned_cols=78  Identities=24%  Similarity=0.210  Sum_probs=63.0

Q ss_pred             eEEEEEEeccCC-ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC-------CCcE
Q 042435          192 CMFFIYEYMERG-SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS-------NLEA  263 (412)
Q Consensus       192 ~~~lv~ey~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~-------~~~~  263 (412)
                      ..++|+|++++- +|.+++..... ...+...+..++.+++..+.-||..   ||+|+|++++|||++.       +..+
T Consensus       109 ~s~LVte~l~~~~sL~~~~~~~~~-~~~~~~~~~~ll~~la~~i~~LH~~---Gi~HgDL~~~NiLl~~~~~~~~~~~~~  184 (268)
T PRK15123        109 TSFIITEDLAPTISLEDYCADWAT-NPPDPRLKRMLIKRVATMVRDMHAA---GINHRDCYICHFLLHLPFPGREEDLKL  184 (268)
T ss_pred             eeEEEEeeCCCCccHHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHHHHC---cCccCCCChhhEEEeccccCCCCCceE
Confidence            478999999875 78877753211 1345567778999999999999999   9999999999999975       5788


Q ss_pred             EEeecCCccc
Q 042435          264 FVADFGTVRL  273 (412)
Q Consensus       264 kl~DfGla~~  273 (412)
                      .++||+.++.
T Consensus       185 ~LIDl~r~~~  194 (268)
T PRK15123        185 SVIDLHRAQI  194 (268)
T ss_pred             EEEECCcccc
Confidence            9999998753

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.26  E-value=1.3e-06  Score=78.44  Aligned_cols=76  Identities=22%  Similarity=0.430  Sum_probs=63.5

Q ss_pred             eEEEEEEeccCC-ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC---cEEEee
Q 042435          192 CMFFIYEYMERG-SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL---EAFVAD  267 (412)
Q Consensus       192 ~~~lv~ey~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~---~~kl~D  267 (412)
                      ..++|+|++++. +|.+++....   ..+...+..++.+++..++-||+.   +|+|+|+++.|||++.+.   .+.++|
T Consensus        91 ~s~lite~l~~~~~L~~~~~~~~---~~~~~~~~~ll~~l~~~i~~lH~~---gi~H~Dl~~~NILv~~~~~~~~~~lID  164 (206)
T PF06293_consen   91 RSYLITEALPGAQDLRDLLQQWE---QLDPSQRRELLRALARLIAKLHDA---GIYHGDLNPSNILVDPDDGQYRFYLID  164 (206)
T ss_pred             eEEEEEEeCCCcccHHHHHHhhc---ccchhhHHHHHHHHHHHHHHHHHC---cCCCCCCCcccEEEeCCCCceeEEEEc
Confidence            458999999874 7888776532   145566788999999999999999   999999999999998776   889999


Q ss_pred             cCCccc
Q 042435          268 FGTVRL  273 (412)
Q Consensus       268 fGla~~  273 (412)
                      |+-++.
T Consensus       165 ld~~~~  170 (206)
T PF06293_consen  165 LDRMRF  170 (206)
T ss_pred             chhcee
Confidence            987764

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=98.24  E-value=2.3e-06  Score=86.10  Aligned_cols=120  Identities=19%  Similarity=0.154  Sum_probs=78.2

Q ss_pred             eeeeecCceEEEEEEeCCCcEEEEEeccCCccccce--------------------------------------------
Q 042435          149 YCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSA--------------------------------------------  184 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~~~~--------------------------------------------  184 (412)
                      +-||.-+.|.||+|++++|+.||||+-+. .+....                                            
T Consensus       167 ~piaaASlaQVhrA~L~~G~~VaVKVQ~P-~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA  245 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKNGEDVAVKVQHP-GLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEA  245 (538)
T ss_pred             chhhhcchhheEEEEecCCCEEEEEecCc-ChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHH
Confidence            57999999999999999999999996321 111100                                            


Q ss_pred             ----------------------EE-EecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCC
Q 042435          185 ----------------------FV-VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC  241 (412)
Q Consensus       185 ----------------------~~-~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~  241 (412)
                                            .+ ........|+||||+|..+.+.-.-..  ..++-.....-+.+...-+-+-|   
T Consensus       246 ~Nae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i~~--~gi~~~~i~~~l~~~~~~qIf~~---  320 (538)
T KOG1235|consen  246 KNAERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAIDK--RGISPHDILNKLVEAYLEQIFKT---  320 (538)
T ss_pred             HhHHHHHHHHHhcccccceeCCeehhhcCcceEEEEEecCCccCCCHHHHHH--cCCCHHHHHHHHHHHHHHHHHhc---
Confidence                                  00 111235689999999988876532111  12444433333322221122222   


Q ss_pred             CCCcEEeCCCCCCEEec----CCCcEEEeecCCccccCC
Q 042435          242 TPSIVHRDISSNNILLN----SNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       242 ~~~ivHrDlkp~NILl~----~~~~~kl~DfGla~~~~~  276 (412)
                        |.+|+|-.|.||+++    .++.+.+-|||+...+..
T Consensus       321 --GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~  357 (538)
T KOG1235|consen  321 --GFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISH  357 (538)
T ss_pred             --CCccCCCCCCcEEEecCCCCCccEEEEcccccccccH
Confidence              899999999999998    367899999999876543

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.23  E-value=6.1e-06  Score=73.58  Aligned_cols=125  Identities=19%  Similarity=0.248  Sum_probs=86.4

Q ss_pred             ccHHHHHH--hhcCcccceeeeecCceEEEEEEeCCCcEEEEEeccCCccccc---------------------------
Q 042435          133 ILYENLID--ATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDS---------------------------  183 (412)
Q Consensus       133 ~~~~~l~~--~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~~~---------------------------  183 (412)
                      ..|.+|.+  ..++|...+++-......|.+-.. +|+.+++|..+..+....                           
T Consensus        19 ~~y~~l~~~i~~~~~~~~kv~k~~~r~~ValIei-~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~   97 (229)
T PF06176_consen   19 EKYLELGEKILDNNYKIIKVFKNTKRNYVALIEI-DGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGF   97 (229)
T ss_pred             hHHHHHHHHHHhCCceEEEeecCCCccEEEEEEE-CCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCc
Confidence            34555533  356788888888888888887777 678899996543221110                           


Q ss_pred             ------eEE-----EecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCC
Q 042435          184 ------AFV-----VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISS  252 (412)
Q Consensus       184 ------~~~-----~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp  252 (412)
                            ..+     +.-....+++|||++|..|.+...       ++.    .++..+..++.-+|..   |++|+|..|
T Consensus        98 ~~~~~~yl~~ekk~~~~~~~~~ll~EYIeG~~l~d~~~-------i~e----~~~~ki~~~ikqlH~~---G~~HGD~hp  163 (229)
T PF06176_consen   98 TEPADPYLAAEKKIFRYTSSYVLLMEYIEGVELNDIED-------IDE----DLAEKIVEAIKQLHKH---GFYHGDPHP  163 (229)
T ss_pred             cccccceeeeeeeeccceeEEEEEEEEecCeecccchh-------cCH----HHHHHHHHHHHHHHHc---CCccCCCCc
Confidence                  001     112244578999999988876532       222    2456677889999999   999999999


Q ss_pred             CCEEecCCCcEEEeecCCccc
Q 042435          253 NNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       253 ~NILl~~~~~~kl~DfGla~~  273 (412)
                      .|++++++ .++++||+..+.
T Consensus       164 gNFlv~~~-~i~iID~~~k~~  183 (229)
T PF06176_consen  164 GNFLVSNN-GIRIIDTQGKRM  183 (229)
T ss_pred             CcEEEECC-cEEEEECccccc
Confidence            99999854 599999986653

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.19  E-value=1.4e-05  Score=72.22  Aligned_cols=136  Identities=24%  Similarity=0.283  Sum_probs=90.2

Q ss_pred             cccHHHHHHhhcCcccceee---eecCceEEEEEEeCCCcEEEEEeccCCccccce----------------------EE
Q 042435          132 KILYENLIDATEYFHIRYCI---GTGGYDSVYKAELPDGKVVALKKLHHSETEDSA----------------------FV  186 (412)
Q Consensus       132 ~~~~~~l~~~~~~f~~~~~l---G~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~~~~----------------------~~  186 (412)
                      ..+++.|....+...+....   ++|.-+.||+|...++..+|||..+........                      ..
T Consensus        34 ~~t~~~l~~L~~rg~i~~~~g~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~  113 (268)
T COG1718          34 KRTLETLRRLLSRGVITELVGCISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFA  113 (268)
T ss_pred             hHHHHHHHHHhcCCceeeeEeeecCCcceEEEeeccCCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHH
Confidence            45667777777777666654   467777999999888999999976532111000                      00


Q ss_pred             ---------------------EecCceEEEEEEeccCCc-eeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCC
Q 042435          187 ---------------------VYSPQCMFFIYEYMERGS-LFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS  244 (412)
Q Consensus       187 ---------------------~~~~~~~~lv~ey~~~gs-L~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~  244 (412)
                                           -..-....|||||+.... -.-.|.+-    .+.......+..++++.+.-|-..+  +
T Consensus       114 W~~kEf~NL~R~~eAGVrvP~Pi~~~~nVLvMEfIg~~g~pAP~LkDv----~~e~~e~~~~~~~~v~~~~~l~~~a--~  187 (268)
T COG1718         114 WARKEFRNLKRAYEAGVRVPEPIAFRNNVLVMEFIGDDGLPAPRLKDV----PLELEEAEGLYEDVVEYMRRLYKEA--G  187 (268)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCceeecCCeEEEEeccCCCCCCCCcccC----CcCchhHHHHHHHHHHHHHHHHHhc--C
Confidence                                 011223479999996431 11122221    1222245667778888888777632  9


Q ss_pred             cEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          245 IVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       245 ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      +||+||+.=|||+. ++.+.++|+|-|-..
T Consensus       188 LVHgDLSEyNiL~~-~~~p~iID~~QaV~~  216 (268)
T COG1718         188 LVHGDLSEYNILVH-DGEPYIIDVSQAVTI  216 (268)
T ss_pred             cccccchhhheEEE-CCeEEEEECcccccc
Confidence            99999999999999 889999999977543

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.16  E-value=5.5e-05  Score=74.51  Aligned_cols=148  Identities=18%  Similarity=0.316  Sum_probs=106.4

Q ss_pred             CceEEEEEEe-CCCcEEEEEecc---------------------CCccccceEEE----ecCceEEEEEEeccC-Cceee
Q 042435          155 GYDSVYKAEL-PDGKVVALKKLH---------------------HSETEDSAFVV----YSPQCMFFIYEYMER-GSLFC  207 (412)
Q Consensus       155 ~~g~Vy~~~~-~~~~~vAvK~l~---------------------~~~~~~~~~~~----~~~~~~~lv~ey~~~-gsL~~  207 (412)
                      --.+.||+.. .||..|++|+++                     |.|++....++    ..+..+++||+|.|+ ++|.+
T Consensus       288 ~~~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d  367 (655)
T KOG3741|consen  288 FSITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYD  367 (655)
T ss_pred             ccceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHH
Confidence            3457799954 589999999982                     22332222222    235578999999985 56765


Q ss_pred             eeccCc------------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          208 VLRDDD------------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       208 ~l~~~~------------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      +.....            .....+....+.++.|+..||.++|+.   |+.-+-|.+.+||++++.+++|+..|+...+.
T Consensus       368 ~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHss---GLAck~L~~~kIlv~G~~RIriS~C~i~Dvl~  444 (655)
T KOG3741|consen  368 LYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSS---GLACKTLDLKKILVTGKMRIRISGCGIMDVLQ  444 (655)
T ss_pred             HHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhc---CceeecccHhHeEeeCcceEEEecccceeeec
Confidence            432211            123467788999999999999999998   99999999999999999999999988876654


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCC
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTH  322 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~  322 (412)
                      .+...            |  +.   --.+-|.=.||.+++.|.||..
T Consensus       445 ~d~~~------------~--le---~~Qq~D~~~lG~ll~aLAt~~~  474 (655)
T KOG3741|consen  445 EDPTE------------P--LE---SQQQNDLRDLGLLLLALATGTE  474 (655)
T ss_pred             CCCCc------------c--hh---HHhhhhHHHHHHHHHHHhhccc
Confidence            44310            0  11   1235688899999999999963

>PRK09902 hypothetical protein; Provisional

Probab=98.02  E-value=3.7e-05  Score=68.33  Aligned_cols=117  Identities=18%  Similarity=0.119  Sum_probs=83.3

Q ss_pred             eeecCceEEEEEEeCCCcEEEEEecc--------CCccccce-------------------EEEe------cCceEEEEE
Q 042435          151 IGTGGYDSVYKAELPDGKVVALKKLH--------HSETEDSA-------------------FVVY------SPQCMFFIY  197 (412)
Q Consensus       151 lG~G~~g~Vy~~~~~~~~~vAvK~l~--------~~~~~~~~-------------------~~~~------~~~~~~lv~  197 (412)
                      -|+||.+-|++..+ +|+.+-+|+-.        ++......                   -++.      ..-..+||+
T Consensus        26 ~~rgG~SgV~r~~~-~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pvf~~~~k~~~~~rA~LVT  104 (216)
T PRK09902         26 YRRNGMSGVQCVER-NGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVT  104 (216)
T ss_pred             cCCCCcceEEEEEe-CCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccceeeeeccCCceEEEEEE
Confidence            47799999999887 44578889653        22211000                   0000      122468999


Q ss_pred             EeccC-CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCc--EEEeecCCcc
Q 042435          198 EYMER-GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLE--AFVADFGTVR  272 (412)
Q Consensus       198 ey~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~--~kl~DfGla~  272 (412)
                      |-+++ -+|.+++.+..-. +.+...+..+..+++..++-||+.   ++.|+|+.+.||+++.++.  ++++||--++
T Consensus       105 e~L~g~~~L~~~l~~~~~~-~~~~~~k~~il~~va~~ia~LH~~---Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r  178 (216)
T PRK09902        105 EDMAGFISIADWYAQHAVS-PYSDEVRQAMLKAVALAFKKMHSV---NRQHGCCYVRHIYVKTEGKAEAGFLDLEKSR  178 (216)
T ss_pred             EeCCCCccHHHHHhcCCcC-CcchHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHhheeecCCCCeeEEEEEhhccc
Confidence            97763 4787777554211 356777889999999999999999   9999999999999986666  8999997665

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.79  E-value=3.6e-05  Score=85.19  Aligned_cols=41  Identities=34%  Similarity=0.436  Sum_probs=32.2

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|||+.| ++|.+|. +.++++|+.||||+|+++|.+|.
T Consensus       523 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  565 (968)
T PLN00113        523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK  565 (968)
T ss_pred             cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence            35777888888 8888876 67788888888888888888886

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=97.65  E-value=4.7e-06  Score=83.72  Aligned_cols=175  Identities=18%  Similarity=0.118  Sum_probs=117.0

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeCCCcEEEEEe----------------ccCCc-cccceEEEecCceEEEEEEeccC
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKK----------------LHHSE-TEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~----------------l~~~~-~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      +.+.-+..-+-+++|+++++||.+-...+....+.                .++++ .......+..+...+++++|+..
T Consensus       239 Dk~kws~~fh~fvK~altknpKkRptaeklL~h~fvs~~l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~~~i~~~i~s~  318 (829)
T KOG0576|consen  239 DKTKWSEFFHNFVKGALTKNPKKRPTAEKLLQHPFVSQTLSRRLAIELLDKVNNPNPVVRYLEDYDGEDYLWIPMRICST  318 (829)
T ss_pred             CCccchHHHHHHHHHHhcCCCccCCChhhheeceeeccchhhHHHHHHHHHccCCCCcccccccCCcccccchhhhhhcC
Confidence            33444444456789999999998653222222332                24444 22223334455677889999977


Q ss_pred             C-ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCc
Q 042435          203 G-SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR  281 (412)
Q Consensus       203 g-sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~  281 (412)
                      | +-..-....  ...+...+...+...-.++++++|+.   .-+|+|    ||+..+ ...+..||+.+..+.... ..
T Consensus       319 ~rs~~~~~~~s--e~~~~~~~~~~~~r~et~~l~~l~~~---~~~~~d----~~l~s~-~~~~~~~~~v~~~L~~~~-~~  387 (829)
T KOG0576|consen  319 GRSSALEMTVS--EIALEQYQFAYPLRKETRPLAELHSS---YKVHRD----NILGSE-EEVKLLDFAVPPQLTRTM-KP  387 (829)
T ss_pred             CccccccCChh--hHhhhhhhhhhhhhhhcccccccccc---cccCcc----cccccc-cccccccccCCcccCccc-cc
Confidence            6 222111111  11244445556666778899999976   458998    887765 678999999988765543 33


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcc
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGE  325 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~  325 (412)
                      ....+++.|+|||+...+.+..+.|+|+.|+--.++--|-.|-.
T Consensus       388 ~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~  431 (829)
T KOG0576|consen  388 RTAIGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPRS  431 (829)
T ss_pred             ccCCCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCCC
Confidence            45678999999999999999999999999998778877777643

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.50  E-value=0.00042  Score=61.10  Aligned_cols=81  Identities=23%  Similarity=0.365  Sum_probs=62.6

Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .++|.||.+.+++......-..-..-+|..|.+||.++++.+.++++.....+.-.|++++|+-+++++++|++|...+.
T Consensus        31 ~~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nfgv~~~~~lk~iDld~v~  110 (188)
T PF12260_consen   31 RFYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPLGFFYLCDVSPDNFGVNDDGRLKLIDLDDVF  110 (188)
T ss_pred             CEEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecchHHeEEeCCCcEEEEechhcc
Confidence            36788999877665321110111247899999999999999999998654468889999999999999999999987665


Q ss_pred             c
Q 042435          273 L  273 (412)
Q Consensus       273 ~  273 (412)
                      .
T Consensus       111 ~  111 (188)
T PF12260_consen  111 V  111 (188)
T ss_pred             h
Confidence            3

Proteins in this uncharacterised family are described as transmembrane proteins.

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.45  E-value=4.2e-05  Score=50.17  Aligned_cols=37  Identities=19%  Similarity=0.216  Sum_probs=30.8

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      .|++|+|+.| ++ .||+ +.+|+.|+.||+|+|+++ .+|
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence            4899999999 87 6777 999999999999999998 444

...

>PLN03150 hypothetical protein; Provisional

Probab=97.43  E-value=0.00013  Score=76.55  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=38.2

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      ..|+.|||+.| ++|.||. +.++++|+.||||+|+|+|.+|..
T Consensus       442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~  485 (623)
T PLN03150        442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES  485 (623)
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH
Confidence            46889999999 9999986 889999999999999999999973

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=97.43  E-value=0.0022  Score=58.30  Aligned_cols=29  Identities=17%  Similarity=0.376  Sum_probs=25.6

Q ss_pred             CCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          243 PSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       243 ~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      +.++|+|+.|.||++++++ +.++||+.+.
T Consensus       153 ~~~~HgD~~~~Nii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       153 STCLHGDFQIGNLITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             CceEecCCCCCcEEEcCCC-cEEEechhcC
Confidence            3578999999999999877 9999998775

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=97.27  E-value=0.0022  Score=57.88  Aligned_cols=123  Identities=17%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             eeeeecCceEEEEEEeCCCcEEEEEeccCC-------------------cc--ccceEEE---ecCceEEEEEEeccCCc
Q 042435          149 YCIGTGGYDSVYKAELPDGKVVALKKLHHS-------------------ET--EDSAFVV---YSPQCMFFIYEYMERGS  204 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~-------------------~~--~~~~~~~---~~~~~~~lv~ey~~~gs  204 (412)
                      +.++.|..+.||+....+ ..+++|.....                   ..  .......   ......+++|+++++.+
T Consensus         3 ~~l~~G~~n~~~~v~~~~-~~~vlK~~~~~~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i~g~~   81 (239)
T PF01636_consen    3 RPLSGGFSNRVYRVTTDD-GRYVLKFYRPPDAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYIPGRP   81 (239)
T ss_dssp             EEEEESSSSEEEEEEETT-SEEEEEEESSHHHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEESSEE
T ss_pred             ccCCCCCeeeEEEEEECC-cEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEecccc
Confidence            578999999999999977 68999976443                   01  0111111   12234689999999887


Q ss_pred             eee----------------ee---ccCc-ccccCCHHH---------HHHH------------HHHHHH-HHHHHHh---
Q 042435          205 LFC----------------VL---RDDD-EAIELNWTR---------RMNI------------VKSVAH-ALSYLHH---  239 (412)
Q Consensus       205 L~~----------------~l---~~~~-~~~~l~~~~---------~~~i------------~~~ia~-gL~~LH~---  239 (412)
                      +..                .+   +... ......+..         ....            ...+.. .++.++.   
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (239)
T PF01636_consen   82 LDDELSPEQRPELLRQLGRALAQLHQVPPPFSPFADWPEWRLEFLRQLESWTARLRASELFDDLEELEERLLQELEALLP  161 (239)
T ss_dssp             HHHTSTHHHHHHHHHHHHHHHHHHHHSHTTCCCHTHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccchhhhhhcccccccccccccccccccccccccccccccccchhhhhhhHHHHHHHHHHHHhhhc
Confidence            766                00   0110 000011110         0000            111222 3333332   


Q ss_pred             -CCCCCcEEeCCCCCCEEec-CCCcEEEeecCCcc
Q 042435          240 -DCTPSIVHRDISSNNILLN-SNLEAFVADFGTVR  272 (412)
Q Consensus       240 -~~~~~ivHrDlkp~NILl~-~~~~~kl~DfGla~  272 (412)
                       .....++|+|+.|.||+++ +++.+.|+||+.+.
T Consensus       162 ~~~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a~  196 (239)
T PF01636_consen  162 KPLPPVLIHGDLHPGNILVDPSDGRIGIIDFEDAG  196 (239)
T ss_dssp             CCSCEEEE-SS-SGGGEEEESSTTEEEE--GTT-E
T ss_pred             cCCCcEEEEeccccccceeeeccceeEEEecccce
Confidence             1245799999999999999 55666799998765

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=97.10  E-value=0.00097  Score=57.29  Aligned_cols=114  Identities=20%  Similarity=0.209  Sum_probs=68.3

Q ss_pred             ccceeeeecCceEEEEEEeCCCcEEEEEeccCCccccce-----------E-----EEecCceEEEEEEeccCCceeeee
Q 042435          146 HIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSA-----------F-----VVYSPQCMFFIYEYMERGSLFCVL  209 (412)
Q Consensus       146 ~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~~~~-----------~-----~~~~~~~~~lv~ey~~~gsL~~~l  209 (412)
                      ...+.||+|++|.||+|.+. |..+|+|.-++.......           .     ..+.-+..++.|||..|-.|.++-
T Consensus        25 ~v~~~L~KG~~s~Vyl~~~~-~~~~a~Kvrr~ds~r~~l~kEakiLeil~g~~~~p~vy~yg~~~i~me~i~G~~L~~~~  103 (201)
T COG2112          25 RVEKELAKGTTSVVYLGEWR-GGEVALKVRRRDSPRRNLEKEAKILEILAGEGVTPEVYFYGEDFIRMEYIDGRPLGKLE  103 (201)
T ss_pred             hhhhhhhcccccEEEEeecc-CceEEEEEecCCcchhhHHHHHHHHHHhhhcCCCceEEEechhhhhhhhhcCcchhhhh
Confidence            34567999999999999995 457888876554322110           0     122223345669999887776543


Q ss_pred             ccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCC-CCCEEecCCCcEEEeecCCccc
Q 042435          210 RDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDIS-SNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       210 ~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlk-p~NILl~~~~~~kl~DfGla~~  273 (412)
                      ...      +-.+.    ..++..---|-..   ||-|+.|. |..+++-.+..+.|+||--|+.
T Consensus       104 ~~~------~rk~l----~~vlE~a~~LD~~---GI~H~El~~~~k~vlv~~~~~~iIDFd~At~  155 (201)
T COG2112         104 IGG------DRKHL----LRVLEKAYKLDRL---GIEHGELSRPWKNVLVNDRDVYIIDFDSATF  155 (201)
T ss_pred             hcc------cHHHH----HHHHHHHHHHHHh---ccchhhhcCCceeEEecCCcEEEEEccchhh
Confidence            321      12222    2333332223333   88888886 4444444455999999988874

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=96.96  E-value=0.00075  Score=63.37  Aligned_cols=113  Identities=16%  Similarity=0.204  Sum_probs=78.4

Q ss_pred             cccceeeeecCceEEEEEEeCCCcEEEEEecc-----------------CCccccceE----------------------
Q 042435          145 FHIRYCIGTGGYDSVYKAELPDGKVVALKKLH-----------------HSETEDSAF----------------------  185 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~-----------------~~~~~~~~~----------------------  185 (412)
                      +.+++.||-|.-+.||.+...+|++.++|.-+                 +.....-..                      
T Consensus        94 ~svGnqIGVGKESDIY~v~d~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmkaL~e~gfp  173 (465)
T KOG2268|consen   94 ESVGNQIGVGKESDIYVVADEEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMKALYERGFP  173 (465)
T ss_pred             hhhccccccccccceEEEecCCCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence            67789999999999999999999999998321                 111000000                      


Q ss_pred             --EEecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcE
Q 042435          186 --VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEA  263 (412)
Q Consensus       186 --~~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~  263 (412)
                        ...+.+..++|||++.+-.|.+.-+-.      +.++...-+.++   +.-|-.+   |+||+|..-=||+++++..+
T Consensus       174 VPkpiD~~RH~Vvmelv~g~Pl~~v~~v~------d~~~ly~~lm~~---Iv~la~~---GlIHgDFNEFNimv~dd~~i  241 (465)
T KOG2268|consen  174 VPKPIDHNRHCVVMELVDGYPLRQVRHVE------DPPTLYDDLMGL---IVRLANH---GLIHGDFNEFNIMVKDDDKI  241 (465)
T ss_pred             CCCcccccceeeHHHhhcccceeeeeecC------ChHHHHHHHHHH---HHHHHHc---CceecccchheeEEecCCCE
Confidence              023456779999999998887754322      223332222222   3334445   99999999999999999999


Q ss_pred             EEeecC
Q 042435          264 FVADFG  269 (412)
Q Consensus       264 kl~DfG  269 (412)
                      +++||-
T Consensus       242 ~vIDFP  247 (465)
T KOG2268|consen  242 VVIDFP  247 (465)
T ss_pred             EEeech
Confidence            999995

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=96.89  E-value=0.009  Score=52.88  Aligned_cols=32  Identities=31%  Similarity=0.546  Sum_probs=29.2

Q ss_pred             cCcccceeeeecCc-eEEEEEEeCCCcEEEEEec
Q 042435          143 EYFHIRYCIGTGGY-DSVYKAELPDGKVVALKKL  175 (412)
Q Consensus       143 ~~f~~~~~lG~G~~-g~Vy~~~~~~~~~vAvK~l  175 (412)
                      .+++..+.||.|.. |.|||++. +|+.+|+|.+
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I-~g~~YALKlf   69 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEI-DGRIYALKLF   69 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEE-CCeEEEEEEe
Confidence            77888999999999 99999999 6789999984

>PRK05231 homoserine kinase; Provisional

Probab=96.83  E-value=0.01  Score=56.90  Aligned_cols=31  Identities=19%  Similarity=0.301  Sum_probs=26.4

Q ss_pred             CCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          242 TPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       242 ~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      ..+++|+|+.|.||+++++...-|+||+.+.
T Consensus       186 p~~liHgD~~~~Nil~~~~~~~~iIDf~~~~  216 (319)
T PRK05231        186 PRGVIHADLFRDNVLFEGDRLSGFIDFYFAC  216 (319)
T ss_pred             CcccCCCCCCCCcEEEECCceEEEEeccccc
Confidence            4589999999999999876556799999775

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=96.82  E-value=0.012  Score=53.94  Aligned_cols=30  Identities=20%  Similarity=0.272  Sum_probs=26.4

Q ss_pred             CCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          243 PSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       243 ~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      +.++|+|+.|.||+++++....|+||+.+.
T Consensus       163 ~~l~HgD~~~~Nil~~~~~~~~iIDwe~a~  192 (244)
T cd05150         163 LVVTHGDACLPNIIVDPGKFSGFIDLGRLG  192 (244)
T ss_pred             eEEECCCCCCccEEEeCCcEEEEEEccccc
Confidence            468999999999999987778899998765

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=96.80  E-value=0.0062  Score=57.64  Aligned_cols=124  Identities=16%  Similarity=0.125  Sum_probs=71.1

Q ss_pred             ceeeeecCceEEEEEEeCCCcEEEEEeccCCccccce------------E--------------EEecCceEEEEEEecc
Q 042435          148 RYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSA------------F--------------VVYSPQCMFFIYEYME  201 (412)
Q Consensus       148 ~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~~~~------------~--------------~~~~~~~~~lv~ey~~  201 (412)
                      .+.+..|....+|+....+ ..+++|...........            .              .....+..+.+++|++
T Consensus        19 i~~i~~G~~n~~y~v~~~~-~~~vLr~~~~~~~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~~~~~~~~~~~~l~~~i~   97 (296)
T cd05153          19 FEGISAGIENTNYFVTTDS-GRYVLTLFEKVSAEELPFFLALLDHLAERGLPVPRPIADRDGEYLSELAGKPAALVEFLA   97 (296)
T ss_pred             eecccCccccceEEEEeCC-CcEEEEEcCCCChHhccHHHHHHHHHHHCCCCCCccccCCCCcEeeeeCCceEEEEEeCC
Confidence            4567778888999987754 46888876531111000            0              0122345689999999


Q ss_pred             CCceeee----e----------ccCcc--------cccCCHHHHHH----------HHHHHHHHHHHHHh----CCCCCc
Q 042435          202 RGSLFCV----L----------RDDDE--------AIELNWTRRMN----------IVKSVAHALSYLHH----DCTPSI  245 (412)
Q Consensus       202 ~gsL~~~----l----------~~~~~--------~~~l~~~~~~~----------i~~~ia~gL~~LH~----~~~~~i  245 (412)
                      |..+...    .          +....        .....|.....          ....+...+.++..    ....++
T Consensus        98 G~~~~~~~~~~~~~lg~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~l  177 (296)
T cd05153          98 GEHLTRPTAAHCRQIGEALARLHLAAQSFPGERNNLRGLAWIRELGKDLLPLLSAEDRALLADELARQDAFDPSDLPRGV  177 (296)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhccCCccCCCcCCcHHHHHHHHHhccccCHHHHHHHHHHHHHHHhhhhhcCCCcC
Confidence            8776431    0          00000        01123332210          11123344555543    123479


Q ss_pred             EEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          246 VHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       246 vHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      +|+|+.|.||+++++....|.||+.+.
T Consensus       178 ~HgD~~~~Nil~~~~~~~~iIDfe~a~  204 (296)
T cd05153         178 IHADLFRDNVLFDGDELSGVIDFYFAC  204 (296)
T ss_pred             CccCcCcccEEEeCCceEEEeehhhhc
Confidence            999999999999987777899998765

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=96.78  E-value=0.0038  Score=67.46  Aligned_cols=169  Identities=14%  Similarity=0.126  Sum_probs=107.8

Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCC---CEEecCCCcEEEe--ecCCc
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSN---NILLNSNLEAFVA--DFGTV  271 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~---NILl~~~~~~kl~--DfGla  271 (412)
                      .||+..-++...+..-.   ..+..+.+.+..+..+||+|+|+.   ...|.-+..+   +--.+.++...++  ||+.+
T Consensus       265 ~~~~s~~~~~~~~q~v~---~i~~~~~r~~~~~~~~GL~~~h~~---~l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss  338 (1351)
T KOG1035|consen  265 QEICSKVELRSLLQSVG---SIPLETLRILHQKLLEGLAYLHSL---SLEHVVLSASSSKESTVDGEGVVAISLSDFDSS  338 (1351)
T ss_pred             HhhcCccchHHHHhhcc---ccCHHHHHHHHHHHhhhHHHHHHh---ccceeEEecccccccccCccceeecchhhhccc
Confidence            45666656655555433   467778888999999999999988   5555555444   4444556666666  88877


Q ss_pred             cccCCCCCCcccccccccccccccccCcccCc--ccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          272 RLLDVDSSNRTLQAGTYGYIALELVYTMVVTE--KCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       272 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~--ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      +.+....... ....+..|.+||......++.  ..|+|.+|.....+..|..+-...          ......+    .
T Consensus       339 ~~l~d~~~~~-~~~~~~~~~~~e~~~~~~~~~~r~~dL~~lgll~~~~~~~~~i~~~~----------~~~~~~l----~  403 (1351)
T KOG1035|consen  339 KPLPDNEKSF-SDLLAEIRNADEDLKENTAKKSRLTDLWCLGLLLLQLSQGEDISEKS----------AVPVSLL----D  403 (1351)
T ss_pred             ccCCCcccch-hhcCccccccccccccccchhhhhhHHHHHHHHHhhhhhcCcccccc----------cchhhhh----c
Confidence            7654332222 223445677888776665544  479999999999999887652210          0001111    1


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      .. ..   .   ...+...+|+..++++|+++.+++.+.-.-.+
T Consensus       404 ~~-~~---~---~~~d~~~~~~~~~~~~Rl~~~~ll~~~f~~~~  440 (1351)
T KOG1035|consen  404 VL-ST---S---ELLDALPKCLDEDSEERLSALELLTHPFLRFP  440 (1351)
T ss_pred             cc-cc---h---hhhhhhhhhcchhhhhccchhhhhhchhcccc
Confidence            00 00   0   24566679999999999999999988654433

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=96.63  E-value=0.012  Score=53.71  Aligned_cols=30  Identities=23%  Similarity=0.297  Sum_probs=26.5

Q ss_pred             CCcEEeCCCCCCEEecC-CCcEEEeecCCcc
Q 042435          243 PSIVHRDISSNNILLNS-NLEAFVADFGTVR  272 (412)
Q Consensus       243 ~~ivHrDlkp~NILl~~-~~~~kl~DfGla~  272 (412)
                      ..++|+|+.+.|||+++ +..+.++||-.|.
T Consensus       170 ~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~  200 (235)
T cd05157         170 IVFCHNDLLSGNIIYNEEKNSVKFIDYEYAG  200 (235)
T ss_pred             EEEEcCCCCcCcEEEeCCCCCEEEEEcccCC
Confidence            46899999999999997 5789999998775

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=96.51  E-value=0.00014  Score=79.88  Aligned_cols=136  Identities=13%  Similarity=0.013  Sum_probs=101.0

Q ss_pred             CceEEEEEEeccCCceeeeeccCcc-cccCCHHHHHHHHHHHHHHHHHHHhCC--CCCcEEeCCCCCCEEecCCCcEEEe
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDE-AIELNWTRRMNIVKSVAHALSYLHHDC--TPSIVHRDISSNNILLNSNLEAFVA  266 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~ia~gL~~LH~~~--~~~ivHrDlkp~NILl~~~~~~kl~  266 (412)
                      ..+.+..++|+..|++.+.+-...+ ...++..-......+...+..-+|+..  ..-.+|++||+-|.++..+..+|+.
T Consensus      1303 s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~~Lkf~lpmIVtny~v~~g 1382 (2724)
T KOG1826|consen 1303 STEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSKSLKFTLPMIVTNYNVKLG 1382 (2724)
T ss_pred             ChHHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcccCCccchhhhhhhhccceecCCccccc
Confidence            3455788999999999988765432 223333333333333355555555542  2246899999999999999999999


Q ss_pred             ecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcc
Q 042435          267 DFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGE  325 (412)
Q Consensus       267 DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~  325 (412)
                      ++|+.+...+.........+++.|+.|+......++.++|+|..|+.+|+...|..+|-
T Consensus      1383 k~gLdKIknp~~sf~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs~~n~~fi 1441 (2724)
T KOG1826|consen 1383 KGGLDKIKNPVLSFFGLELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRSDGNAYFI 1441 (2724)
T ss_pred             ccccccccCchHhhhhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHHH
Confidence            99999965555545566678899999999888889988999999999999988877753

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=96.41  E-value=0.019  Score=54.74  Aligned_cols=42  Identities=26%  Similarity=0.425  Sum_probs=32.1

Q ss_pred             HHHHHHHHh----CCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          231 AHALSYLHH----DCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       231 a~gL~~LH~----~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .+.++++..    ....+++|+|+.+.||+++++....|+||+.+.
T Consensus       171 ~~~~~~l~~~~~~~~~~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       171 DKELDYLDKFWPRDLPRGVIHADLFPDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             HHHHHHHHhhhhhcCCCccCCCCCCcCcEEEECCceEEEeeccccc
Confidence            345555543    234589999999999999988767899998764

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>PLN02876 acyl-CoA dehydrogenase

Probab=96.38  E-value=0.034  Score=60.48  Aligned_cols=43  Identities=19%  Similarity=0.319  Sum_probs=30.4

Q ss_pred             HHHHHHHhCCC--------CCcEEeCCCCCCEEecCC-Cc-EEEeecCCcccc
Q 042435          232 HALSYLHHDCT--------PSIVHRDISSNNILLNSN-LE-AFVADFGTVRLL  274 (412)
Q Consensus       232 ~gL~~LH~~~~--------~~ivHrDlkp~NILl~~~-~~-~kl~DfGla~~~  274 (412)
                      ..+.+|..+..        +.++|+|+++.||+++.+ .. .-|.||.++..-
T Consensus       206 ~l~~wL~~~~P~~~~~~~~~~LvHGD~~~~Nvl~~~~~~~v~aVLDWE~a~~G  258 (822)
T PLN02876        206 ELIDWLRENIPAEDSTGAGTGIVHGDFRIDNLVFHPTEDRVIGILDWELSTLG  258 (822)
T ss_pred             HHHHHHHhcCCCccccCCCcceEecCcccccEEEcCCCCeEEEEEeeeccccC
Confidence            34567755422        359999999999999853 33 468999987643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.36  E-value=0.0025  Score=44.84  Aligned_cols=44  Identities=27%  Similarity=0.291  Sum_probs=34.5

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCCCcCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTYLRDN   48 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~~~~~   48 (412)
                      .|++|+|+.| ++...+. +.++++|+.||+|+|+++. ||...|..
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~   47 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSN   47 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTT
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcC
Confidence            4789999999 8855555 7899999999999999975 45443443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.33  E-value=0.002  Score=45.37  Aligned_cols=35  Identities=26%  Similarity=0.263  Sum_probs=30.5

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccc
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNL   37 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l   37 (412)
                      -.|++|||+.| ++...|. +.++++|+.|++++|+|
T Consensus        25 ~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen   25 PNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46899999999 8766666 78999999999999986

...

>PRK10593 hypothetical protein; Provisional

Probab=96.32  E-value=0.038  Score=52.48  Aligned_cols=28  Identities=14%  Similarity=0.220  Sum_probs=21.9

Q ss_pred             CCCcEEeCCCCCCEEecCC-Cc-EEEeecC
Q 042435          242 TPSIVHRDISSNNILLNSN-LE-AFVADFG  269 (412)
Q Consensus       242 ~~~ivHrDlkp~NILl~~~-~~-~kl~DfG  269 (412)
                      .+.++|||+.+.||+++.+ +. +.|.|..
T Consensus       192 ~psLlHGDlw~gNvl~~~~~~~i~~liDPa  221 (297)
T PRK10593        192 NCVLVHGNFTLRSMLKDPRSDQLLAMLNPG  221 (297)
T ss_pred             CCeeEeCCCCcccEEECCCCCceEEEECch
Confidence            4678999999999999854 33 6677754

>TIGR02721 ycfN_thiK thiamine kinase

Probab=96.02  E-value=0.038  Score=51.12  Aligned_cols=30  Identities=13%  Similarity=0.169  Sum_probs=25.8

Q ss_pred             CCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          243 PSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       243 ~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      +.++|+|+.|.||++++++ +.++||..+..
T Consensus       146 ~~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~  175 (256)
T TIGR02721       146 LAPLHMDVHAYNLVVTPQG-LKLIDWEYASD  175 (256)
T ss_pred             CeeecCCCCcCcEEEeCCC-CEEEeccccCc
Confidence            3589999999999999876 78999988763

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.91  E-value=0.0029  Score=34.66  Aligned_cols=18  Identities=39%  Similarity=0.434  Sum_probs=15.6

Q ss_pred             CCCEEeCccccccccCCCC
Q 042435           26 SFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus        26 ~l~~~~ls~N~l~G~iP~~   44 (412)
                      +|+.||+|+|+|+ +||..
T Consensus         1 ~L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             TESEEEETSSEES-EEGTT
T ss_pred             CccEEECCCCcCE-eCChh
Confidence            5789999999999 89974

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]

Probab=95.74  E-value=0.053  Score=52.16  Aligned_cols=120  Identities=24%  Similarity=0.393  Sum_probs=82.3

Q ss_pred             ccceeeeecCceEEEEEEeCCCcEEEEEeccCCccc--------cceE-----EEe------------------------
Q 042435          146 HIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETE--------DSAF-----VVY------------------------  188 (412)
Q Consensus       146 ~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~--------~~~~-----~~~------------------------  188 (412)
                      ++..+|..|.-+.||.|.-.+|..+|||..+.+-.+        .-.+     .|.                        
T Consensus       147 ~inGCiSTGKEANVYHat~~dG~~~AIKIYKTSILvFKDRdRYV~GEfRFRhgyck~NPRKMVk~WAEKE~RNLkRl~~a  226 (520)
T KOG2270|consen  147 EINGCISTGKEANVYHATEEDGSEFAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKHNPRKMVKTWAEKEMRNLKRLNNA  226 (520)
T ss_pred             ecccccccCccceeEeeecCCCceEEEEEEeeeEEEEechhhhccceeeeecccccCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            344678899999999999999999999976532111        0000     111                        


Q ss_pred             ---cC-----ceEEEEEEeccCCce-eeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC
Q 042435          189 ---SP-----QCMFFIYEYMERGSL-FCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS  259 (412)
Q Consensus       189 ---~~-----~~~~lv~ey~~~gsL-~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~  259 (412)
                         .+     ....|||+|+..-.. .-.|++    ..++......+-.+++.-+.-|-+.|  ++||.||.-=|+|+- 
T Consensus       227 GIP~PePIlLk~hVLVM~FlGrdgw~aPkLKd----~~ls~~ka~~~Y~~~v~~MR~lY~~c--~LVHADLSEfN~Lyh-  299 (520)
T KOG2270|consen  227 GIPCPEPILLKNHVLVMEFLGRDGWAAPKLKD----ASLSTSKARELYQQCVRIMRRLYQKC--RLVHADLSEFNLLYH-  299 (520)
T ss_pred             CCCCCCceeeecceEeeeeccCCCCcCccccc----ccCChHHHHHHHHHHHHHHHHHHHHh--ceeccchhhhhheEE-
Confidence               11     123799999953211 112222    23666667777788888888888777  899999999999985 


Q ss_pred             CCcEEEeecCCcc
Q 042435          260 NLEAFVADFGTVR  272 (412)
Q Consensus       260 ~~~~kl~DfGla~  272 (412)
                      ++.+.++|-+-+-
T Consensus       300 dG~lyiIDVSQSV  312 (520)
T KOG2270|consen  300 DGKLYIIDVSQSV  312 (520)
T ss_pred             CCEEEEEEccccc
Confidence            5789999987654

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=95.70  E-value=0.064  Score=52.88  Aligned_cols=30  Identities=20%  Similarity=0.313  Sum_probs=25.4

Q ss_pred             CCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          243 PSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       243 ~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ..++|||+.+.||++.++ .++++||-++..
T Consensus       223 ~~l~HgDl~~gni~~~~~-~~~viD~E~a~~  252 (401)
T PRK09550        223 EALLHGDLHTGSIFVTEE-ETKVIDPEFAFY  252 (401)
T ss_pred             CceeeccCCcccEEeeCC-CcEEEecccccc
Confidence            468999999999999766 689999987653

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=95.67  E-value=0.036  Score=50.62  Aligned_cols=30  Identities=30%  Similarity=0.537  Sum_probs=25.5

Q ss_pred             CCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          243 PSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       243 ~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      +.++|+|+.+.||+++++...-|+||+.+.
T Consensus       164 ~~l~HGD~~~~Nvlv~~~~i~giIDw~~a~  193 (235)
T cd05155         164 PVWFHGDLAPGNLLVQDGRLSAVIDFGCLG  193 (235)
T ss_pred             ceEEeCCCCCCcEEEECCCEEEEEeCcccC
Confidence            458999999999999876556799999875

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=95.51  E-value=0.16  Score=45.03  Aligned_cols=112  Identities=21%  Similarity=0.294  Sum_probs=67.4

Q ss_pred             ceeeeecCceEEEEEEeCCCcEEEEEeccCCc-------------------------------------------cccce
Q 042435          148 RYCIGTGGYDSVYKAELPDGKVVALKKLHHSE-------------------------------------------TEDSA  184 (412)
Q Consensus       148 ~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~-------------------------------------------~~~~~  184 (412)
                      ...||+|+.=.||.  ++++....||.++...                                           +....
T Consensus         6 ~~~i~~G~~R~cy~--HP~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~~   83 (199)
T PF10707_consen    6 SDLIAQGGERDCYQ--HPDDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRFY   83 (199)
T ss_pred             CcccccCCCceEEE--CCCCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccEe
Confidence            45799999999986  3445556667655443                                           11122


Q ss_pred             EEEecCceEEEEEEeccC--C----ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec
Q 042435          185 FVVYSPQCMFFIYEYMER--G----SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN  258 (412)
Q Consensus       185 ~~~~~~~~~~lv~ey~~~--g----sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~  258 (412)
                      +...++...-+|+|.+.+  |    +|.+++.+..    ++. .   +...+-+-..||-++   .|+.+|++|.||++.
T Consensus        84 G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~----~~~-~---~~~~L~~f~~~l~~~---~Iv~~dl~~~NIv~~  152 (199)
T PF10707_consen   84 GFVETNLGLGLVVELIRDADGNISPTLEDYLKEGG----LTE-E---LRQALDEFKRYLLDH---HIVIRDLNPHNIVVQ  152 (199)
T ss_pred             EEEecCCceEEEEEEEECCCCCcCccHHHHHHcCC----ccH-H---HHHHHHHHHHHHHHc---CCeecCCCcccEEEE
Confidence            335556666788887643  2    3444443322    333 2   233333445677766   899999999999995


Q ss_pred             CC---C-cEEEee-cCCcc
Q 042435          259 SN---L-EAFVAD-FGTVR  272 (412)
Q Consensus       259 ~~---~-~~kl~D-fGla~  272 (412)
                      ..   . .+.|+| ||-..
T Consensus       153 ~~~~~~~~lvlIDG~G~~~  171 (199)
T PF10707_consen  153 RRDSGEFRLVLIDGLGEKE  171 (199)
T ss_pred             ecCCCceEEEEEeCCCCcc
Confidence            32   2 577888 55443

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=94.31  E-value=0.19  Score=48.41  Aligned_cols=54  Identities=22%  Similarity=0.302  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          218 LNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       218 l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      -.|.+.+.++.+.+.-++-+..+.  +.-|||+.-.|||++ +|++.|+||-+++.-
T Consensus       318 ~~~~e~lsff~s~~sil~~lekkf--~fehrnlt~~niLId-~GnvtLIDfklsRl~  371 (488)
T COG5072         318 DRSEEELSFFWSCISILDILEKKF--PFEHRNLTLDNILID-EGNVTLIDFKLSRLS  371 (488)
T ss_pred             ccHHHHHHHHHHHHHHHhhhhhcC--Ccccccccccceeee-cCceEEEEeeeeecc
Confidence            578899999998888777777653  789999999999999 999999999999853

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=93.08  E-value=0.44  Score=46.24  Aligned_cols=30  Identities=23%  Similarity=0.332  Sum_probs=24.8

Q ss_pred             CCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          243 PSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       243 ~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ..++|||+.+.||+++++ .++++|+.++..
T Consensus       192 ~~llHGDl~~gNi~~~~~-~~~~iD~e~~~~  221 (370)
T TIGR01767       192 ETLLHGDLHSGSIFVSEH-ETKVIDPEFAFY  221 (370)
T ss_pred             ceeeeccCCcccEEEcCC-CCEEEcCccccc
Confidence            368999999999999765 478999987653

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=93.05  E-value=0.76  Score=43.36  Aligned_cols=27  Identities=30%  Similarity=0.449  Sum_probs=19.0

Q ss_pred             CCCcEEeCCCCCCEEecCCCcEEEeec
Q 042435          242 TPSIVHRDISSNNILLNSNLEAFVADF  268 (412)
Q Consensus       242 ~~~ivHrDlkp~NILl~~~~~~kl~Df  268 (412)
                      .|-++|+||-+.|++.+.++++.|.|=
T Consensus       187 ~PsLlHGDLW~GN~~~~~~g~p~l~DP  213 (288)
T PF03881_consen  187 KPSLLHGDLWSGNVGFDADGEPVLFDP  213 (288)
T ss_dssp             --EEE-SS-SGGGEEEETTE-EEE-S-
T ss_pred             CceeeEcCccccceeecCCCCceeecc
Confidence            567999999999999999988999883

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=92.94  E-value=0.23  Score=47.05  Aligned_cols=32  Identities=25%  Similarity=0.352  Sum_probs=27.7

Q ss_pred             CCCCcEEeCCCCCCEEecCC----CcEEEeecCCcc
Q 042435          241 CTPSIVHRDISSNNILLNSN----LEAFVADFGTVR  272 (412)
Q Consensus       241 ~~~~ivHrDlkp~NILl~~~----~~~kl~DfGla~  272 (412)
                      ....++|+|+.+.||+++++    +.+.++||..+.
T Consensus       177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~  212 (302)
T cd05156         177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYAS  212 (302)
T ss_pred             CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCC
Confidence            34578999999999999874    789999998875

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=92.82  E-value=0.094  Score=51.18  Aligned_cols=59  Identities=19%  Similarity=0.228  Sum_probs=39.7

Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHH-hCCCCCcEEeCCCCCCEEec
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH-HDCTPSIVHRDISSNNILLN  258 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH-~~~~~~ivHrDlkp~NILl~  258 (412)
                      ..++-+|+++-++..++....    .+...+.+++.--+.|+--+- -.   +.+|.|+.|.||++-
T Consensus       320 ~vl~E~~~~Gl~v~~~v~~~~----~pe~l~kkva~lg~~AllkMl~vD---NFvHaDlHPGNVlir  379 (565)
T KOG1236|consen  320 LVLVETYERGLSVLRFVKWKS----QPEALVKKVAKLGVNALLKMLIVD---NFVHADLHPGNVLIR  379 (565)
T ss_pred             ceeeeeccccccHHhhhhccc----ChHHHHHHHHHHHHHHHHHHHHhh---cceecccCCCcEEEE
Confidence            356777888888877776543    233445556655556654332 22   799999999999994

>PRK06148 hypothetical protein; Provisional

Probab=92.80  E-value=0.42  Score=53.24  Aligned_cols=31  Identities=26%  Similarity=0.499  Sum_probs=25.9

Q ss_pred             CCCcEEeCCCCCCEEecCCC--cEE-EeecCCcc
Q 042435          242 TPSIVHRDISSNNILLNSNL--EAF-VADFGTVR  272 (412)
Q Consensus       242 ~~~ivHrDlkp~NILl~~~~--~~k-l~DfGla~  272 (412)
                      ..++||+|+.+.|||++.+.  ++. |+|||-+.
T Consensus       202 p~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~  235 (1013)
T PRK06148        202 PAQVIHNDANDYNILVDADDGERISGLIDFGDAV  235 (1013)
T ss_pred             CcceECCCCCcccEEEcCCCCcceEEEEECcccc
Confidence            44799999999999998775  454 89999875

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=92.20  E-value=0.062  Score=57.37  Aligned_cols=38  Identities=18%  Similarity=0.023  Sum_probs=20.1

Q ss_pred             chhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            5 LAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         5 ~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      |+.|+|+.| ++ .||. +.++++|..|||++|+|+|.+|.
T Consensus       424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            344444444 33 3444 44555666666666666666554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.69  E-value=0.1  Score=26.48  Aligned_cols=14  Identities=36%  Similarity=0.501  Sum_probs=9.6

Q ss_pred             CCCCEEeCcccccc
Q 042435           25 PSFLKSDMSFNNLD   38 (412)
Q Consensus        25 ~~l~~~~ls~N~l~   38 (412)
                      ++|++|+||+|+|+
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            47899999999986

...

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=91.11  E-value=0.055  Score=43.81  Aligned_cols=30  Identities=27%  Similarity=0.289  Sum_probs=27.1

Q ss_pred             ceeeeecCceEEEEEEeCCCcEEEEEeccC
Q 042435          148 RYCIGTGGYDSVYKAELPDGKVVALKKLHH  177 (412)
Q Consensus       148 ~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~  177 (412)
                      .+-||.|+.|.||+|++++|+.||||..+.
T Consensus        16 ~~PlasASiaQVh~a~l~~g~~VaVKV~rP   45 (119)
T PF03109_consen   16 PEPLASASIAQVHRARLKDGEEVAVKVQRP   45 (119)
T ss_pred             cchhhheehhhheeeeecccchhhhhhcch
Confidence            367999999999999999999999998764

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=90.61  E-value=0.57  Score=45.07  Aligned_cols=28  Identities=25%  Similarity=0.564  Sum_probs=25.1

Q ss_pred             cEEeCCCCCCEEecCCCc-EEEeecCCcc
Q 042435          245 IVHRDISSNNILLNSNLE-AFVADFGTVR  272 (412)
Q Consensus       245 ivHrDlkp~NILl~~~~~-~kl~DfGla~  272 (412)
                      ++|+|+.|.||+++++.. ..+.||+-+.
T Consensus       199 iIH~D~~~~NVl~d~~~~~~g~iDFdDa~  227 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTDVSGFIDFDDAG  227 (331)
T ss_pred             eeecCCCccceeEcCCCCeeeEEEccccc
Confidence            899999999999998875 8899999765

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=90.56  E-value=0.55  Score=44.56  Aligned_cols=30  Identities=33%  Similarity=0.523  Sum_probs=25.7

Q ss_pred             CCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          242 TPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       242 ~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      ..+++|+|+.+.||+++. +.+.++||+.+.
T Consensus       186 ~~~liHgD~~~~Nil~~~-~~i~lIDfd~~~  215 (313)
T TIGR02906       186 IRGFCHQDYAYHNILLKD-NEVYVIDFDYCT  215 (313)
T ss_pred             cCceEcCCCCcccEEEeC-CcEEEEECcccc
Confidence            357899999999999987 578899998664

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=90.47  E-value=0.25  Score=44.34  Aligned_cols=75  Identities=15%  Similarity=0.165  Sum_probs=51.6

Q ss_pred             HHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcccccccccccccccccCcccCcccccHHH
Q 042435          231 AHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSF  310 (412)
Q Consensus       231 a~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~  310 (412)
                      .+.|.-.|+. ..+.+|+|..|+||+-|..|.+||.|=+.--            ..+..|.--|+   ...|+++.+-+|
T Consensus       151 i~~L~~fH~~-~~~~lHGD~np~NiM~D~~G~lKlVDP~~Ll------------~~~V~~vN~~Y---~~lT~~aE~~~f  214 (308)
T PF07387_consen  151 IKDLMDFHSE-NQHCLHGDCNPDNIMCDKFGYLKLVDPVCLL------------ENQVNMVNIEY---ESLTQEAEVKVF  214 (308)
T ss_pred             HHHHHHhhcc-CCCeecCCCChhheeecCCCCEEecChhhhh------------hheeeEEeeec---cccChHHHHHHH
Confidence            3678888965 4589999999999999999999999865321            11222332121   234667788888


Q ss_pred             HHHHHHHHhCC
Q 042435          311 GVVALEVLMGT  321 (412)
Q Consensus       311 Gvil~elltg~  321 (412)
                      =.-+++++...
T Consensus       215 v~s~l~~v~~~  225 (308)
T PF07387_consen  215 VKSCLKLVEKQ  225 (308)
T ss_pred             HHHHHHHHHHH
Confidence            77777777643

The function of this family is unknown.

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=90.08  E-value=0.19  Score=31.75  Aligned_cols=29  Identities=10%  Similarity=0.202  Sum_probs=15.6

Q ss_pred             ccceeeehhhHHHHHHHHHHHHHHHHHhh
Q 042435           77 PSFILSVKIFLPLTPILAFTIFGFILLLK  105 (412)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (412)
                      ....+++.++++++++++++++.+++++|
T Consensus         9 ~~vaIa~~VvVPV~vI~~vl~~~l~~~~r   37 (40)
T PF08693_consen    9 NTVAIAVGVVVPVGVIIIVLGAFLFFWYR   37 (40)
T ss_pred             ceEEEEEEEEechHHHHHHHHHHhheEEe
Confidence            34445556666666655555444444444

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=89.79  E-value=0.081  Score=53.95  Aligned_cols=49  Identities=24%  Similarity=0.318  Sum_probs=0.0

Q ss_pred             chhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCCCCcCC-CCcccc
Q 042435            5 LAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPTYLRDN-PPKSFV   54 (412)
Q Consensus         5 ~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~~~~~~-~~~~~~   54 (412)
                      |+.||||+| +.-....|..-.++..||||||++. +||..+|-+ ...-|.
T Consensus       105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen  105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL  155 (1255)
T ss_pred             ceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	412
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		6e-26
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-25
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		9e-14
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		2e-13
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		6e-13
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		7e-13
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		1e-11
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		1e-11
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		5e-10
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		6e-09
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		6e-09
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		6e-09
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		1e-08
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		2e-08
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		2e-08
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		2e-08
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		3e-08
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		3e-08
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		3e-08
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		3e-08
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		3e-08
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		3e-08
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		3e-08
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		3e-08
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		4e-08
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		5e-08
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		5e-08
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		5e-08
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		5e-08
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		6e-08
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		6e-08
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		6e-08
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		8e-08
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		9e-08
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		9e-08
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		9e-08
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		1e-07
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		1e-07
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		1e-07
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		1e-07
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		1e-07
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		1e-07
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		1e-07
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		2e-07
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		2e-07
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		2e-07
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		2e-07
3a7f_A	303	Human Mst3 Kinase Length = 303		3e-07
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		3e-07
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		3e-07
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		1e-06
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		1e-06
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		1e-06
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		2e-06
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		2e-06
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		3e-06
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		3e-06
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		3e-06
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		3e-06
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		4e-06
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		4e-06
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		4e-06
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		4e-06
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		4e-06
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		4e-06
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		4e-06
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		4e-06
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		5e-06
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		5e-06
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		5e-06
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		5e-06
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		5e-06
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		5e-06
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		6e-06
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		6e-06
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		6e-06
2pl0_A	289	Lck Bound To Imatinib Length = 289		6e-06
4i1z_A	329	Crystal Structure Of The Monomeric (v948r) Form Of		7e-06
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		7e-06
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		7e-06
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		7e-06
4i21_A	329	Crystal Structure Of L858r + T790m Egfr Kinase Doma		8e-06
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		8e-06
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		8e-06
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		8e-06
4i20_A	329	Crystal Structure Of Monomeric (v948r) Primary Onco		8e-06
3w2o_A	331	Egfr Kinase Domain T790m/l858r Mutant With Tak-285		8e-06
2eb3_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (L8		8e-06
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		8e-06
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		9e-06
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		9e-06
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		9e-06
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		9e-06
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		9e-06
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		9e-06
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		1e-05
2itt_A	327	Crystal Structure Of Egfr Kinase Domain L858r Mutat		1e-05
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		1e-05
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		1e-05
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		1e-05
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		1e-05
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		1e-05
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		1e-05
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		1e-05
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		1e-05
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		1e-05
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		1e-05
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		1e-05
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		1e-05
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		1e-05
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		1e-05
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		1e-05
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		1e-05
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		1e-05
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		1e-05
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		1e-05
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		1e-05
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		2e-05
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		2e-05
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		2e-05
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		2e-05
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		2e-05
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		2e-05
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		3e-05
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		3e-05
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		3e-05
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		3e-05
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		3e-05
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		4e-05
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		4e-05
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		4e-05
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		5e-05
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		5e-05
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		5e-05
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		5e-05
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		5e-05
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		5e-05
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		5e-05
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		6e-05
3ug1_A	334	Crystal Structure Of The Mutated Egfr Kinase Domain		6e-05
2eb2_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (G7		6e-05
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		7e-05
2itn_A	327	Crystal Structure Of Egfr Kinase Domain G719s Mutat		7e-05
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		9e-05
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		1e-04
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		1e-04
3a4o_X	286	Lyn Kinase Domain Length = 286		1e-04
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		1e-04
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		1e-04
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		1e-04
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		1e-04
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		2e-04
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		2e-04
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		2e-04
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-04
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		2e-04
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		2e-04
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		2e-04
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		2e-04
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		3e-04
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		3e-04
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		3e-04
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-04
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		3e-04
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		3e-04
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		3e-04
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		3e-04
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		3e-04
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		3e-04
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		3e-04
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		3e-04
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		4e-04
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		4e-04
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		4e-04
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		5e-04
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		5e-04
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		6e-04
2qlu_A	314	Crystal Structure Of Activin Receptor Type Ii Kinas		6e-04
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		7e-04
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		7e-04
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		7e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 134/306 (43%), Gaps = 43/306 (14%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLH-----------HSETEDSAFVVY- 188
           A++ F  +  +G GG+  VYK  L DG +VA+K+L             +E E  +  V+ 
Sbjct: 36  ASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTEVEMISMAVHR 95
Query: 189 ----------SPQCMFFIYEYMERGSLFCVLRDDDEAIE-LNWTRRMNIVKSVAHALSYL 237
                     +P     +Y YM  GS+   LR+  E+   L+W +R  I    A  L+YL
Sbjct: 96  NLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYL 155
Query: 238 HHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDV-DSSNRTLQAGTYGYIALELV 296
           H  C P I+HRD            EA V DFG  +L+D  D        GT G+IA E +
Sbjct: 156 HDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGTIGHIAPEYL 215
Query: 297 YTMVVTEKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKI 356
            T   +EK  ++ +GV+ LE++ G                 +ML+D +   L     + +
Sbjct: 216 STGKSSEKTDVFGYGVMLLELITGQR---AFDLARLANDDDVMLLDWVKGLLKEKKLEAL 272
Query: 357 I----------QDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPEM 406
           +          +++  +  +AL C +S P  RP M  + + LEG      GL E    E 
Sbjct: 273 VDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG-----DGLAE-RWEEW 326
Query: 407 RNQEMF 412
           + +EMF
Sbjct: 327 QKEEMF 332

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 133/306 (43%), Gaps = 43/306 (14%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDS-----------AFVVY- 188
           A++ F  +  +G GG+  VYK  L DG +VA+K+L    T+             +  V+ 
Sbjct: 28  ASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTEVEMISMAVHR 87
Query: 189 ----------SPQCMFFIYEYMERGSLFCVLRDDDEAIE-LNWTRRMNIVKSVAHALSYL 237
                     +P     +Y YM  GS+   LR+  E+   L+W +R  I    A  L+YL
Sbjct: 88  NLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYL 147
Query: 238 HHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDV-DSSNRTLQAGTYGYIALELV 296
           H  C P I+HRD            EA V DFG  +L+D  D        G  G+IA E +
Sbjct: 148 HDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGXIGHIAPEYL 207
Query: 297 YTMVVTEKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKI 356
            T   +EK  ++ +GV+ LE++ G    +            +ML+D +   L     + +
Sbjct: 208 STGKSSEKTDVFGYGVMLLELITGQRAFDLARLAND---DDVMLLDWVKGLLKEKKLEAL 264
Query: 357 I----------QDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPEM 406
           +          +++  +  +AL C +S P  RP M  + + LEG      GL E    E 
Sbjct: 265 VDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG-----DGLAE-RWEEW 318
Query: 407 RNQEMF 412
           + +EMF
Sbjct: 319 QKEEMF 324

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 27/206 (13%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFVVYSPQCMFF- 195
           +L +AT  F  ++ IG G +  VYK  L DG  VALK+     ++         + + F 
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 196 --------------------IYEYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHAL 234
                               IY+YME G+L   L   D   + ++W +R+ I    A  L
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 235 SYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFG-TVRLLDVDSSN-RTLQAGTYGYIA 292
            YLH   T +I+HRD               + DFG + +  ++D ++   +  GT GYI 
Sbjct: 153 HYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTLGYID 209
Query: 293 LELVYTMVVTEKCVIYSFGVVALEVL 318
            E      +TEK  +YSFGVV  EVL
Sbjct: 210 PEYFIKGRLTEKSDVYSFGVVLFEVL 235

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 101/262 (38%), Gaps = 33/262 (12%)
Query: 145 FHIRYCIGTGGYDSVYKAELPDG----------------------KVVALKKLHHSETED 182
            +I+  IG G + +V++AE                          +V  +K+L H     
Sbjct: 39  LNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVL 98
Query: 183 SAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCT 242
               V  P  +  + EY+ RGSL+ +L       +L+  RR+++   VA  ++YLH+   
Sbjct: 99  FMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR-N 157
Query: 243 PSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVT 302
           P IVHRD               V DFG  RL           AGT  ++A E++      
Sbjct: 158 PPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASXFLXSKXAAGTPEWMAPEVLRDEPSN 217
Query: 303 EKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDIIL 362
           EK  +YSFGV+  E+     P              +  +    +RL  P N         
Sbjct: 218 EKSDVYSFGVILWELATLQQPWGNLNPAQV-----VAAVGFKCKRLEIPRNLN-----PQ 267
Query: 363 VSTIALACLRSKPKSRPTMQRI 384
           V+ I   C  ++P  RP+   I
Sbjct: 268 VAAIIEGCWTNEPWKRPSFATI 289

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 90/206 (43%), Gaps = 27/206 (13%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFVVYSPQCMFF- 195
           +L +AT  F  ++ IG G +  VYK  L DG  VALK+     ++         + + F 
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 196 --------------------IYEYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHAL 234
                               IY+YME G+L   L   D   + ++W +R+ I    A  L
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGL 152
Query: 235 SYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFG-TVRLLDVDSSN-RTLQAGTYGYIA 292
            YLH   T +I+HRD               + DFG + +  ++  ++   +  GT GYI 
Sbjct: 153 HYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLGYID 209
Query: 293 LELVYTMVVTEKCVIYSFGVVALEVL 318
            E      +TEK  +YSFGVV  EVL
Sbjct: 210 PEYFIKGRLTEKSDVYSFGVVLFEVL 235

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 102/262 (38%), Gaps = 33/262 (12%)
Query: 145 FHIRYCIGTGGYDSVYKAELPDG----------------------KVVALKKLHHSETED 182
            +I+  IG G + +V++AE                          +V  +K+L H     
Sbjct: 39  LNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVL 98
Query: 183 SAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCT 242
               V  P  +  + EY+ RGSL+ +L       +L+  RR+++   VA  ++YLH+   
Sbjct: 99  FMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR-N 157
Query: 243 PSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVT 302
           P IVHR+               V DFG  RL      +    AGT  ++A E++      
Sbjct: 158 PPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSN 217
Query: 303 EKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDIIL 362
           EK  +YSFGV+  E+     P              +  +    +RL  P N         
Sbjct: 218 EKSDVYSFGVILWELATLQQPWGNLNPAQV-----VAAVGFKCKRLEIPRNLN-----PQ 267
Query: 363 VSTIALACLRSKPKSRPTMQRI 384
           V+ I   C  ++P  RP+   I
Sbjct: 268 VAAIIEGCWTNEPWKRPSFATI 289

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 112/269 (41%), Gaps = 38/269 (14%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFVV--------- 187
           ++ID  E   +   +G G +  V KA+    K VA+K++  SE+E  AF+V         
Sbjct: 4   HMIDYKE-IEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIE-SESERKAFIVELRQLSRVN 60
Query: 188 -----------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSY 236
                       +P C+  + EY E GSL+ VL   +          M+     +  ++Y
Sbjct: 61  HPNIVKLYGACLNPVCL--VMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAY 118
Query: 237 LHHDCTPSIVHRDXXXXXXXXXXXXEAF-VADFGTVRLLDVDSSNRTLQAGTYGYIALEL 295
           LH     +++HRD                + DFGT   +    +N     G+  ++A E+
Sbjct: 119 LHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTN---NKGSAAWMAPEV 175
Query: 296 VYTMVVTEKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQK 355
                 +EKC ++S+G++  EV+    P +         GP   ++  ++    PP+ + 
Sbjct: 176 FEGSNYSEKCDVFSWGIILWEVITRRKPFD------EIGGPAFRIMWAVHNGTRPPLIKN 229
Query: 356 IIQDIILVSTIALACLRSKPKSRPTMQRI 384
           + + I    ++   C    P  RP+M+ I
Sbjct: 230 LPKPI---ESLMTRCWSKDPSQRPSMEEI 255

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 112/269 (41%), Gaps = 38/269 (14%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFVV--------- 187
           ++ID  E   +   +G G +  V KA+    K VA+K++  SE+E  AF+V         
Sbjct: 3   HMIDYKE-IEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIE-SESERKAFIVELRQLSRVN 59
Query: 188 -----------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSY 236
                       +P C+  + EY E GSL+ VL   +          M+     +  ++Y
Sbjct: 60  HPNIVKLYGACLNPVCL--VMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAY 117
Query: 237 LHHDCTPSIVHRDXXXXXXXXXXXXEAF-VADFGTVRLLDVDSSNRTLQAGTYGYIALEL 295
           LH     +++HRD                + DFGT   +    +N     G+  ++A E+
Sbjct: 118 LHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTN---NKGSAAWMAPEV 174
Query: 296 VYTMVVTEKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQK 355
                 +EKC ++S+G++  EV+    P +         GP   ++  ++    PP+ + 
Sbjct: 175 FEGSNYSEKCDVFSWGIILWEVITRRKPFD------EIGGPAFRIMWAVHNGTRPPLIKN 228
Query: 356 IIQDIILVSTIALACLRSKPKSRPTMQRI 384
           + + I    ++   C    P  RP+M+ I
Sbjct: 229 LPKPI---ESLMTRCWSKDPSQRPSMEEI 254

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 19/165 (11%)
Query: 168 KVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIV 227
           +V  ++ L H        V+Y  + + FI EY++ G+L  +++  D   +  W++R++  
Sbjct: 57  EVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDS--QYPWSQRVSFA 114
Query: 228 KSVAHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL------------- 274
           K +A  ++YLH   + +I+HRD               VADFG  RL+             
Sbjct: 115 KDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSL 171
Query: 275 -DVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVL 318
              D   R    G   ++A E++      EK  ++SFG+V  E++
Sbjct: 172 KKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEII 216

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 86/209 (41%), Gaps = 21/209 (10%)
Query: 195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXXXX 254
            +Y YM  GSL   L   D    L+W  R  I +  A+ +++LH +     +HRD     
Sbjct: 107 LVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSAN 163
Query: 255 XXXXXXXEAFVADFGTVRLLD--VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGV 312
                   A ++DFG  R  +    +   +   GT  Y+A E +    +T K  IYSFGV
Sbjct: 164 ILLDEAFTAKISDFGLARASEKFAQTVMXSRIVGTTAYMAPEALRGE-ITPKSDIYSFGV 222
Query: 313 VALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQR---------LSPPINQKIIQDIILV 363
           V LE++ G    +          P+++L                +   +N      +  +
Sbjct: 223 VLLEIITGLPAVDEHRE------PQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAM 276
Query: 364 STIALACLRSKPKSRPTMQRISQELEGKT 392
            ++A  CL  K   RP ++++ Q L+  T
Sbjct: 277 YSVASQCLHEKKNKRPDIKKVQQLLQEMT 305

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 31/214 (14%)
Query: 195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXXXX 254
            +Y YM  GSL   L   D    L+W  R  I +  A+ +++LH +     +HRD     
Sbjct: 107 LVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSAN 163
Query: 255 XXXXXXXEAFVADFGTVRLLDVDSSNRTLQA-------GTYGYIALELVYTMVVTEKCVI 307
                   A ++DFG  R     +S +  Q        GT  Y+A E +    +T K  I
Sbjct: 164 ILLDEAFTAKISDFGLAR-----ASEKFAQTVMXXRIVGTTAYMAPEALRGE-ITPKSDI 217
Query: 308 YSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQR---------LSPPINQKIIQ 358
           YSFGVV LE++ G    +          P+++L                +   +N     
Sbjct: 218 YSFGVVLLEIITGLPAVDEHRE------PQLLLDIKEEIEDEEKTIEDYIDKKMNDADST 271
Query: 359 DIILVSTIALACLRSKPKSRPTMQRISQELEGKT 392
            +  + ++A  CL  K   RP ++++ Q L+  T
Sbjct: 272 SVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT 305

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 87/214 (40%), Gaps = 31/214 (14%)
Query: 195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXXXX 254
            +Y YM  GSL   L   D    L+W  R  I +  A+ +++LH +     +HRD     
Sbjct: 101 LVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSAN 157
Query: 255 XXXXXXXEAFVADFGTVRLLDVDSSNRTLQ-------AGTYGYIALELVYTMVVTEKCVI 307
                   A ++DFG  R     +S +  Q        GT  Y+A E +    +T K  I
Sbjct: 158 ILLDEAFTAKISDFGLAR-----ASEKFAQXVMXXRIVGTTAYMAPEALRGE-ITPKSDI 211
Query: 308 YSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQR---------LSPPINQKIIQ 358
           YSFGVV LE++ G    +          P+++L                +   +N     
Sbjct: 212 YSFGVVLLEIITGLPAVDEHRE------PQLLLDIKEEIEDEEKTIEDYIDKKMNDADST 265
Query: 359 DIILVSTIALACLRSKPKSRPTMQRISQELEGKT 392
            +  + ++A  CL  K   RP ++++ Q L+  T
Sbjct: 266 SVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMT 299

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 33/210 (15%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAF-------------- 185
           A E F I   +G G + +VY A     K ++ALK L  ++ E +                
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 186 ----------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALS 235
                       +    ++ I EY  RG ++  L+   +  + +  R    +  +A+ALS
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQ---KLSKFDEQRTATYITELANALS 127
Query: 236 YLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALEL 295
           Y H   +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E+
Sbjct: 128 YCH---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEM 182
Query: 296 VYTMVVTEKCVIYSFGVVALEVLMGTHPGE 325
           +   +  EK  ++S GV+  E L+G  P E
Sbjct: 183 IEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 212

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 92  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 151
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E++  
Sbjct: 152 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEG 206
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 207 RMHDEKVDLWSLGVLCYEFLVGKPPFE 233

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E++  
Sbjct: 126 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTXLCGTLDYLPPEMIEG 180
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFE 207

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E++  
Sbjct: 126 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEG 180
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFE 207

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 5   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 65  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 124
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E++  
Sbjct: 125 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEG 179
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 180 RMHDEKVDLWSLGVLCYEFLVGKPPFE 206

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 130
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E++  
Sbjct: 131 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEG 185
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 186 RMHDEKVDLWSLGVLCYEFLVGKPPFE 212

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 10  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 69
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 70  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 129
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E++  
Sbjct: 130 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEG 184
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 185 RMHDEKVDLWSLGVLCYEFLVGKPPFE 211

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 128
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E++  
Sbjct: 129 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEG 183
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFE 210

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 126
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG        SS RT  +GT  Y+  E++  
Sbjct: 127 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--CHAPSSRRTTLSGTLDYLPPEMIEG 181
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 182 RMHDEKVDLWSLGVLCYEFLVGKPPFE 208

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 128
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E++  
Sbjct: 129 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEG 183
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFE 210

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 23  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 82
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 83  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 142
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E++  
Sbjct: 143 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEG 197
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 198 RMHDEKVDLWSLGVLCYEFLVGKPPFE 224

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E++  
Sbjct: 126 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTELCGTLDYLPPEMIEG 180
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFE 207

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 33/210 (15%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAF-------------- 185
           A E F I   +G G + +VY A     K ++ALK L  ++ E +                
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 186 ----------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALS 235
                       +    ++ I EY  RG ++  L+   +  + +  R    +  +A+ALS
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQ---KLSKFDEQRTATYITELANALS 127
Query: 236 YLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALEL 295
           Y H   +  ++HRD            E  +ADFG    +   SS R    GT  Y+  E+
Sbjct: 128 YCH---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRXXLXGTLDYLPPEM 182
Query: 296 VYTMVVTEKCVIYSFGVVALEVLMGTHPGE 325
           +   +  EK  ++S GV+  E L+G  P E
Sbjct: 183 IEGRMHDEKVDLWSLGVLCYEFLVGKPPFE 212

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 126
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E++  
Sbjct: 127 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTDLCGTLDYLPPEMIEG 181
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 182 RMHDEKVDLWSLGVLCYEFLVGKPPFE 208

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E++  
Sbjct: 126 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTDLCGTLDYLPPEMIEG 180
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFE 207

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E++  
Sbjct: 126 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTDLCGTLDYLPPEMIEG 180
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFE 207

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 3   ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 63  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 122
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E++  
Sbjct: 123 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEG 177
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 178 RMHDEKVDLWSLGVLCYEFLVGKPPFE 204

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 130
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E++  
Sbjct: 131 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTDLCGTLDYLPPEMIEG 185
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 186 RMHDEKVDLWSLGVLCYEFLVGKPPFE 212

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A   + K ++ALK L  ++ E +               +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 66  RHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS R    GT  Y+  E++  
Sbjct: 126 ---SKKVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRAALCGTLDYLPPEMIEG 180
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFE 207

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 80/209 (38%), Gaps = 21/209 (10%)
Query: 195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXXXX 254
            +Y Y   GSL   L   D    L+W  R  I +  A+ +++LH +     +HRD     
Sbjct: 98  LVYVYXPNGSLLDRLSCLDGTPPLSWHXRCKIAQGAANGINFLHEN---HHIHRDIKSAN 154
Query: 255 XXXXXXXEAFVADFGTVRLLD--VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGV 312
                   A ++DFG  R  +        +   GT  Y A E +    +T K  IYSFGV
Sbjct: 155 ILLDEAFTAKISDFGLARASEKFAQXVXXSRIVGTTAYXAPEALRGE-ITPKSDIYSFGV 213
Query: 313 VALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQR---------LSPPINQKIIQDIILV 363
           V LE++ G               P+++L                +    N      +   
Sbjct: 214 VLLEIITG------LPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKXNDADSTSVEAX 267
Query: 364 STIALACLRSKPKSRPTMQRISQELEGKT 392
            ++A  CL  K   RP ++++ Q L+  T
Sbjct: 268 YSVASQCLHEKKNKRPDIKKVQQLLQEXT 296

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 105/268 (39%), Gaps = 38/268 (14%)
Query: 145 FHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF------------------ 185
           F I   +G G + +VY A E     +VALK L  S+ E                      
Sbjct: 25  FEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLHHPN 84
Query: 186 ------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH 239
                   Y  + ++ I EY  RG L+  L+   ++   +  R   I++ +A AL Y H 
Sbjct: 85  ILRLYNYFYDRRRIYLILEYAPRGELYKELQ---KSCTFDEQRTATIMEELADALMYCH- 140
Query: 240 DCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM 299
                ++HRD            E  +ADFG    +   S  R    GT  Y+  E++   
Sbjct: 141 --GKKVIHRDIKPENLLLGLKGELKIADFGWS--VHAPSLRRKTMCGTLDYLPPEMIEGR 196
Query: 300 VVTEKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQD 359
           +  EK  ++  GV+  E+L+G  P E           +I+ +D+ +    P   Q +I  
Sbjct: 197 MHNEKVDLWCIGVLCYELLVGNPPFESASHNETYR--RIVKVDLKFPASVPTGAQDLISK 254
Query: 360 IIL---VSTIALACLRSKPKSRPTMQRI 384
           ++       + LA + + P  R   +R+
Sbjct: 255 LLRHNPSERLPLAQVSAHPWVRANSRRV 282

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 128
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +A+FG    +   SS RT   GT  Y+  E++  
Sbjct: 129 ---SKRVIHRDIKPENLLLGSAGELKIANFGWS--VHAPSSRRTTLCGTLDYLPPEMIEG 183
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFE 210

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 68  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 127
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +A+FG    +   SS RT   GT  Y+  E++  
Sbjct: 128 ---SKRVIHRDIKPENLLLGSAGELKIANFGWS--VHAPSSRRTTLCGTLDYLPPEMIEG 182
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 183 RMHDEKVDLWSLGVLCYEFLVGKPPFE 209

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS R    GT  Y+  E++  
Sbjct: 126 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRXXLCGTLDYLPPEMIEG 180
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFE 207

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 128
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS R    GT  Y+  E++  
Sbjct: 129 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRAALCGTLDYLPPEMIEG 183
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFE 210

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 6   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 66  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 125
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS R    GT  Y+  E++  
Sbjct: 126 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRAALCGTLDYLPPEMIEG 180
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 181 RMHDEKVDLWSLGVLCYEFLVGKPPFE 207

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 8   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 68  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 127
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS R    GT  Y+  E++  
Sbjct: 128 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRXXLCGTLDYLPPEMIEG 182
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 183 RMHDEKVDLWSLGVLCYEFLVGKPPFE 209

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 128
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS R    GT  Y+  E++  
Sbjct: 129 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRXXLCGTLDYLPPEMIEG 183
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFE 210

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/267 (19%), Positives = 103/267 (38%), Gaps = 42/267 (15%)
Query: 151 IGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCV-- 208
           IG GG+  VY+A    G  VA+K   H   ED +  + + +    ++  ++  ++  +  
Sbjct: 15  IGIGGFGKVYRA-FWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRG 73
Query: 209 --LRDDDEAIELNWTRR-----------------MNIVKSVAHALSYLHHDCTPSIVHRD 249
             L++ +  + + + R                  +N    +A  ++YLH +    I+HRD
Sbjct: 74  VCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRD 133
Query: 250 XXXXXXXXXXXXEAF--------VADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVV 301
                       E          + DFG  R  +   + +   AG Y ++A E++   + 
Sbjct: 134 LKSSNILILQKVENGDLSNKILKITDFGLAR--EWHRTTKMSAAGAYAWMAPEVIRASMF 191
Query: 302 TEKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDII 361
           ++   ++S+GV+  E+L G  P           G  +  + +      P    K+++D  
Sbjct: 192 SKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLALPIPSTCPEPFAKLMED-- 249
Query: 362 LVSTIALACLRSKPKSRPTMQRISQEL 388
                   C    P SRP+   I  +L
Sbjct: 250 --------CWNPDPHSRPSFTNILDQL 268

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 7   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 67  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 126
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS R    GT  Y+  E++  
Sbjct: 127 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRDTLCGTLDYLPPEMIEG 181
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 182 RMHDEKVDLWSLGVLCYEFLVGKPPFE 208

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 86/207 (41%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 11  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 71  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 130
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E +  
Sbjct: 131 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEXIEG 185
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
               EK  ++S GV+  E L+G  P E
Sbjct: 186 RXHDEKVDLWSLGVLCYEFLVGKPPFE 212

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 32  ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 92  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 151
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS R    GT  Y+  E++  
Sbjct: 152 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRDDLCGTLDYLPPEMIEG 206
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 207 RMHDEKVDLWSLGVLCYEFLVGKPPFE 233

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 102/274 (37%), Gaps = 41/274 (14%)
Query: 134 LYENLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLH---------HSETE-- 181
           LY   +D  E F     IG G +  V+K  +    KVVA+K +            + E  
Sbjct: 18  LYFQSMDPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEIT 77
Query: 182 -----DSAFVV------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
                DS +V            ++ I EY+  GS   +L    E   L+ T+   I++ +
Sbjct: 78  VLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLL----EPGPLDETQIATILREI 133
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGY 290
              L YLH +     +HRD            E  +ADFG    L      R    GT  +
Sbjct: 134 LKGLDYLHSEKK---IHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFW 190
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQRLSP 350
           +A E++       K  I+S G+ A+E+  G  P               M +  L  + +P
Sbjct: 191 MAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHP---------MKVLFLIPKNNP 241
Query: 351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
           P  +      +       ACL  +P  RPT + +
Sbjct: 242 PTLEGNYSKPL--KEFVEACLNKEPSFRPTAKEL 273

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 27/207 (13%)
Query: 141 ATEYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------V 187
           A E F I   +G G + +VY A     K ++ALK L  ++ E +               +
Sbjct: 9   ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 188 YSPQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
             P  +    +F     +Y  +E   L  V R+  +  + +  R    +  +A+ALSY H
Sbjct: 69  RHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH 128
Query: 239 HDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              +  ++HRD            E  +ADFG    +   SS R    GT  Y+  E++  
Sbjct: 129 ---SKRVIHRDIKPENLLLGSAGELKIADFGWS--VHAPSSRRDDLCGTLDYLPPEMIEG 183
Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGE 325
            +  EK  ++S GV+  E L+G  P E
Sbjct: 184 RMHDEKVDLWSLGVLCYEFLVGKPPFE 210

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 27/205 (13%)
Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------VYS 189
           E F I   +G G + +VY A     K ++ALK L  ++ E +               +  
Sbjct: 12  EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71
Query: 190 PQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHD 240
           P  +    +F     +Y  +E   L  V R+  +    +  R    +  +A+ALSY H  
Sbjct: 72  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSYCH-- 129
Query: 241 CTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMV 300
            +  ++HRD            E  +ADFG    +   SS RT   GT  Y+  E++   +
Sbjct: 130 -SKRVIHRDIKPENLLLGSNGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRM 186
Query: 301 VTEKCVIYSFGVVALEVLMGTHPGE 325
             EK  ++S GV+  E L+G  P E
Sbjct: 187 HDEKVDLWSLGVLCYEFLVGMPPFE 211

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 18/192 (9%)
Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXX 252
           ++ I EY+  GS   +L    E   L+ T+   I++ +   L YLH +     +HRD   
Sbjct: 95  LWIIMEYLGGGSALDLL----EPGPLDETQIATILREILKGLDYLHSEKK---IHRDIKA 147
Query: 253 XXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGV 312
                    E  +ADFG    L      R    GT  ++A E++       K  I+S G+
Sbjct: 148 ANVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGI 207
Query: 313 VALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLR 372
            A+E+  G  P               M +  L  + +PP  +      +       ACL 
Sbjct: 208 TAIELARGEPPHSELHP---------MKVLFLIPKNNPPTLEGNYSKPL--KEFVEACLN 256
Query: 373 SKPKSRPTMQRI 384
            +P  RPT + +
Sbjct: 257 KEPSFRPTAKEL 268

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 18/192 (9%)
Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXX 252
           ++ I EY+  GS   +L    E   L+ T+   I++ +   L YLH +     +HRD   
Sbjct: 80  LWIIMEYLGGGSALDLL----EPGPLDETQIATILREILKGLDYLHSEKK---IHRDIKA 132
Query: 253 XXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGV 312
                    E  +ADFG    L      R    GT  ++A E++       K  I+S G+
Sbjct: 133 ANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGI 192
Query: 313 VALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLR 372
            A+E+  G  P               M +  L  + +PP  +      +       ACL 
Sbjct: 193 TAIELARGEPPHSELHP---------MKVLFLIPKNNPPTLEGNYSKPL--KEFVEACLN 241
Query: 373 SKPKSRPTMQRI 384
            +P  RPT + +
Sbjct: 242 KEPSFRPTAKEL 253

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 18/192 (9%)
Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXX 252
           ++ I EY+  GS   +L    E   L+ T+   I++ +   L YLH +     +HRD   
Sbjct: 80  LWIIMEYLGGGSALDLL----EPGPLDETQIATILREILKGLDYLHSEKK---IHRDIKA 132
Query: 253 XXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGV 312
                    E  +ADFG    L      R    GT  ++A E++       K  I+S G+
Sbjct: 133 ANVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGI 192
Query: 313 VALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLR 372
            A+E+  G  P               M +  L  + +PP  +      +       ACL 
Sbjct: 193 TAIELARGEPPHSELHP---------MKVLFLIPKNNPPTLEGNYSKPL--KEFVEACLN 241
Query: 373 SKPKSRPTMQRI 384
            +P  RPT + +
Sbjct: 242 KEPSFRPTAKEL 253

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 27/205 (13%)
Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAFV------------VYS 189
           E F I   +G G + +VY A     K ++ALK L  ++ E +               +  
Sbjct: 12  EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71
Query: 190 PQCM----FF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHD 240
           P  +    +F     +Y  +E   L  V R+  +    +  R    +  +A+ALSY H  
Sbjct: 72  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSRFDEQRTATYITELANALSYCH-- 129
Query: 241 CTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMV 300
            +  ++HRD            E  +ADFG    +   SS R    GT  Y+  E++   +
Sbjct: 130 -SKRVIHRDIKPENLLLGSNGELKIADFGWS--VHAPSSRRDTLCGTLDYLPPEMIEGRM 186
Query: 301 VTEKCVIYSFGVVALEVLMGTHPGE 325
             EK  ++S GV+  E L+G  P E
Sbjct: 187 HDEKVDLWSLGVLCYEFLVGMPPFE 211

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 102/275 (37%), Gaps = 43/275 (15%)
Query: 134 LYENLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLH---------HSETE-- 181
           +  N+ D  E F     IG G +  V+K  +    +VVA+K +            + E  
Sbjct: 14  MQNNIADPEELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEIT 73
Query: 182 -----DSAFVV------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
                DS++V            ++ I EY+  GS   +LR    A   +  +   ++K +
Sbjct: 74  VLSQCDSSYVTKYYGSYLKGSKLWIIMEYLGGGSALDLLR----AGPFDEFQIATMLKEI 129
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGY 290
              L YLH +     +HRD            +  +ADFG    L      R    GT  +
Sbjct: 130 LKGLDYLHSEKK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFW 186
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQRLSP 350
           +A E++       K  I+S G+ A+E+  G  P               M +  L  + +P
Sbjct: 187 MAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHP---------MRVLFLIPKNNP 237
Query: 351 PINQKIIQDIIL-VSTIALACLRSKPKSRPTMQRI 384
           P    ++ D          ACL   P  RPT + +
Sbjct: 238 PT---LVGDFTKSFKEFIDACLNKDPSFRPTAKEL 269

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 96/269 (35%), Gaps = 41/269 (15%)
Query: 139 IDATEYFHIRYCIGTGGYDSVYKA------ELPDGKVVALKKLHHSETEDSAFVVYSPQC 192
           +D  E F     IG G +  VYK       E+   K++ L++      +    +    QC
Sbjct: 15  VDPEELFTKLDRIGKGSFGEVYKGIDNHTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQC 74
Query: 193 -----------------MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALS 235
                            ++ I EY+  GS   +L+       L  T    I++ +   L 
Sbjct: 75  DSPYITRYFGSYLKSTKLWIIMEYLGGGSALDLLKPG----PLEETYIATILREILKGLD 130
Query: 236 YLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALEL 295
           YLH +     +HRD            +  +ADFG    L      R    GT  ++A E+
Sbjct: 131 YLHSERK---IHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEV 187
Query: 296 VYTMVVTEKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQK 355
           +       K  I+S G+ A+E+  G  P               M +  L  + SPP  + 
Sbjct: 188 IKQSAYDFKADIWSLGITAIELAKGEPPNSDLHP---------MRVLFLIPKNSPPTLEG 238
Query: 356 IIQDIILVSTIALACLRSKPKSRPTMQRI 384
             Q          ACL   P+ RPT + +
Sbjct: 239 --QHSKPFKEFVEACLNKDPRFRPTAKEL 265

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 30/226 (13%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +K+L H       + V + + ++ I EYME GSL   L+     I+L   + +++   +A
Sbjct: 62  MKQLQHQRLV-RLYAVVTQEPIYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIA 119
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGY 290
             ++++      + +HRD               +ADFG  RL+ D + + R        +
Sbjct: 120 EGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDAEXTAREGAKFPIKW 176
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMGTH-----PGEXXXXXXXXXGPKIMLIDILY 345
            A E +     T K  ++SFG++  E++  TH     PG           P+++      
Sbjct: 177 TAPEAINYGTFTIKSDVWSFGILLTEIV--THGRIPYPG--------MTNPEVIQNLERG 226
Query: 346 QRLSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            R+  P N  +++ Q + L       C + +P+ RPT   +   LE
Sbjct: 227 YRMVRPDNCPEELYQLMRL-------CWKERPEDRPTFDYLRSVLE 265

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 112/275 (40%), Gaps = 54/275 (19%)
Query: 151 IGTGGYDSVYKAEL-PDGKVVALKKLHHSETEDSAFVV---------------------- 187
           IG GG+  V+K  L  D  VVA+K L   ++E    ++                      
Sbjct: 27  IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86
Query: 188 ------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC 241
                 ++P  M  + E++  G L+  L D  +A  + W+ ++ ++  +A  + Y+ +  
Sbjct: 87  KLYGLMHNPPRM--VMEFVPCGDLYHRLLD--KAHPIKWSVKLRLMLDIALGIEYMQNQ- 141
Query: 242 TPSIVHRDXXXXXXXXXXXXE-----AFVADFGTVRLLDVDSSNRTLQAGTYGYIALELV 296
            P IVHRD            E     A VADFGT +   V S +  L  G + ++A E +
Sbjct: 142 NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGTSQQ-SVHSVSGLL--GNFQWMAPETI 198
Query: 297 --YTMVVTEKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQR-LSPPIN 353
                  TEK   YSF ++   +L G  P +           KI  I+++ +  L P I 
Sbjct: 199 GAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYG------KIKFINMIREEGLRPTIP 252
Query: 354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
           +       L + I L C    PK RP    I +EL
Sbjct: 253 EDCPPR--LRNVIEL-CWSGDPKKRPHFSYIVKEL 284

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 26/224 (11%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +K+L H       + V + + ++ I EYME GSL   L+     I+L   + +++   +A
Sbjct: 71  MKQLQHQRLV-RLYAVVTQEPIYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIA 128
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGY 290
             ++++      + +HRD               +ADFG  RL+ D + + R        +
Sbjct: 129 EGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 185
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQR 347
            A E +     T K  ++SFG++  E++      +PG           P+++       R
Sbjct: 186 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--------MTNPEVIQNLERGYR 237
Query: 348 LSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           +  P N  +++ Q + L       C + +P+ RPT   +   LE
Sbjct: 238 MVRPDNCPEELYQLMRL-------CWKERPEDRPTFDYLRSVLE 274

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 30/226 (13%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +K+L H       + V + + ++ I EYME GSL   L+     I+L   + +++   +A
Sbjct: 64  MKQLQHQRLV-RLYAVVTQEPIYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIA 121
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGY 290
             ++++      + +HRD               +ADFG  RL+ D + + R        +
Sbjct: 122 EGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 178
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMGTH-----PGEXXXXXXXXXGPKIMLIDILY 345
            A E +     T K  ++SFG++  E++  TH     PG           P+++      
Sbjct: 179 TAPEAINYGTFTIKSDVWSFGILLTEIV--THGRIPYPG--------MTNPEVIQNLERG 228
Query: 346 QRLSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            R+  P N  +++ Q + L       C + +P+ RPT   +   LE
Sbjct: 229 YRMVRPDNCPEELYQLMRL-------CWKERPEDRPTFDYLRSVLE 267

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 30/226 (13%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +K+L H       + V + + ++ I EYME GSL   L+     I+L   + +++   +A
Sbjct: 62  MKQLQHQRLV-RLYAVVTQEPIYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIA 119
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGY 290
             ++++      + +HRD               +ADFG  RL+ D + + R        +
Sbjct: 120 EGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 176
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMGTH-----PGEXXXXXXXXXGPKIMLIDILY 345
            A E +     T K  ++SFG++  E++  TH     PG           P+++      
Sbjct: 177 TAPEAINYGTFTIKSDVWSFGILLTEIV--THGRIPYPG--------MTNPEVIQNLERG 226
Query: 346 QRLSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            R+  P N  +++ Q + L       C + +P+ RPT   +   LE
Sbjct: 227 YRMVRPDNCPEELYQLMRL-------CWKERPEDRPTFDYLRSVLE 265

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 25/201 (12%)
Query: 143 EYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLH-HSETE------------DSAFVV- 187
           E F +   +G G Y SVYKA     G++VA+K++   S+ +            DS  VV 
Sbjct: 29  EVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVK 88
Query: 188 -----YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCT 242
                +    ++ + EY   GS+  ++R  ++   L       I++S    L YLH    
Sbjct: 89  YYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKT--LTEDEIATILQSTLKGLEYLHF--- 143
Query: 243 PSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVT 302
              +HRD             A +ADFG    L    + R    GT  ++A E++  +   
Sbjct: 144 MRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDXMAKRNXVIGTPFWMAPEVIQEIGYN 203
Query: 303 EKCVIYSFGVVALEVLMGTHP 323
               I+S G+ A+E+  G  P
Sbjct: 204 CVADIWSLGITAIEMAEGKPP 224

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 26/224 (11%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +K+L H       + V + + ++ I EYME GSL   L+     I+L   + +++   +A
Sbjct: 68  MKQLQHQRLV-RLYAVVTQEPIYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIA 125
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGY 290
             ++++      + +HRD               +ADFG  RL+ D + + R        +
Sbjct: 126 EGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 182
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQR 347
            A E +     T K  ++SFG++  E++      +PG           P+++       R
Sbjct: 183 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--------MTNPEVIQNLERGYR 234
Query: 348 LSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           +  P N  +++ Q + L       C + +P+ RPT   +   LE
Sbjct: 235 MVRPDNCPEELYQLMRL-------CWKERPEDRPTFDYLRSVLE 271

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 30/226 (13%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +K+L H       + V + + ++ I EYME GSL   L+     I+L   + +++   +A
Sbjct: 63  MKQLQHQRLV-RLYAVVTQEPIYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIA 120
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGY 290
             ++++      + +HRD               +ADFG  RL+ D + + R        +
Sbjct: 121 EGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 177
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMGTH-----PGEXXXXXXXXXGPKIMLIDILY 345
            A E +     T K  ++SFG++  E++  TH     PG           P+++      
Sbjct: 178 TAPEAINYGTFTIKSDVWSFGILLTEIV--THGRIPYPG--------MTNPEVIQNLERG 227
Query: 346 QRLSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            R+  P N  +++ Q + L       C + +P+ RPT   +   LE
Sbjct: 228 YRMVRPDNCPEELYQLMRL-------CWKERPEDRPTFDYLRSVLE 266

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 30/226 (13%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +K+L H       + V + + ++ I EYME GSL   L+     I+L   + +++   +A
Sbjct: 70  MKQLQHQRLV-RLYAVVTQEPIYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIA 127
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGY 290
             ++++      + +HRD               +ADFG  RL+ D + + R        +
Sbjct: 128 EGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 184
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMGTH-----PGEXXXXXXXXXGPKIMLIDILY 345
            A E +     T K  ++SFG++  E++  TH     PG           P+++      
Sbjct: 185 TAPEAINYGTFTIKSDVWSFGILLTEIV--THGRIPYPG--------MTNPEVIQNLERG 234
Query: 346 QRLSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            R+  P N  +++ Q + L       C + +P+ RPT   +   LE
Sbjct: 235 YRMVRPDNCPEELYQLMRL-------CWKERPEDRPTFDYLRSVLE 273

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 26/224 (11%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +K+L H       + V + + ++ I EYME GSL   L+     I+L   + +++   +A
Sbjct: 62  MKQLQHQRLV-RLYAVVTQEPIYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIA 119
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGY 290
             ++++      + +HRD               +ADFG  RL+ D + + R        +
Sbjct: 120 EGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKW 176
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQR 347
            A E +     T K  ++SFG++  E++      +PG           P+++       R
Sbjct: 177 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--------MTNPEVIQNLERGYR 228
Query: 348 LSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           +  P N  +++ Q + L       C + +P+ RPT   +   LE
Sbjct: 229 MVRPDNCPEELYQLMRL-------CWKERPEDRPTFDYLRSVLE 265

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 34/196 (17%)
Query: 151 IGTGGYDSVYKAELPDGKVVALKK-----------------------LHHSETEDSAFVV 187
           +G G Y  VYKA+   G++VALK+                       LHH        V+
Sbjct: 29  VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVI 88
Query: 188 YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTR--RMNIVKSVAHALSYLHHDCTPSI 245
           +S +C+  ++E+ME+  L  VL ++   ++ +  +     +++ VAH   +        I
Sbjct: 89  HSERCLTLVFEFMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQH-------RI 140
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE-LVYTMVVTEK 304
           +HRD               +ADFG  R   +   + T +  T  Y A + L+ +   +  
Sbjct: 141 LHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTS 200
Query: 305 CVIYSFGVVALEVLMG 320
             I+S G +  E++ G
Sbjct: 201 VDIWSIGCIFAEMITG 216

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 34/196 (17%)
Query: 151 IGTGGYDSVYKAELPDGKVVALKK-----------------------LHHSETEDSAFVV 187
           +G G Y  VYKA+   G++VALK+                       LHH        V+
Sbjct: 29  VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVI 88
Query: 188 YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTR--RMNIVKSVAHALSYLHHDCTPSI 245
           +S +C+  ++E+ME+  L  VL ++   ++ +  +     +++ VAH   +        I
Sbjct: 89  HSERCLTLVFEFMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQH-------RI 140
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE-LVYTMVVTEK 304
           +HRD               +ADFG  R   +   + T +  T  Y A + L+ +   +  
Sbjct: 141 LHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTS 200
Query: 305 CVIYSFGVVALEVLMG 320
             I+S G +  E++ G
Sbjct: 201 VDIWSIGCIFAEMITG 216

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 106/251 (42%), Gaps = 25/251 (9%)
Query: 161 KAELPDGKVVALKKLHHSETED--SAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIEL 218
           + EL   +VV ++  HH    D  S+++V     ++ + E++E G+L  ++        +
Sbjct: 85  RRELLFNEVVIMRDYHHDNVVDMYSSYLVGDE--LWVVMEFLEGGALTDIV----THTRM 138
Query: 219 NWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDS 278
           N  +   +  SV  ALSYLH+     ++HRD               ++DFG    +  + 
Sbjct: 139 NEEQIATVCLSVLRALSYLHNQ---GVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEV 195
Query: 279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKI 338
             R    GT  ++A E++  +    +  I+S G++ +E++ G  P            P +
Sbjct: 196 PKRKXLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPP--------YFNEPPL 247
Query: 339 MLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMK-KG 397
             +  +   L P      ++D+  VS++    L       P+ +  +QEL G   +K  G
Sbjct: 248 QAMRRIRDSLPPR-----VKDLHKVSSVLRGFLDLMLVREPSQRATAQELLGHPFLKLAG 302
Query: 398 LKEISIPEMRN 408
                +P MR 
Sbjct: 303 PPSCIVPLMRQ 313

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGK----VVALKKLHHS-------ETEDSA 184
            ++  TE   ++  +G+G + +VYK   +PDG+     VA+K L  +       E  D A
Sbjct: 12  RILKETELRKVK-VLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEA 70
Query: 185 FV---VYSP-----------QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V   V SP             +  + + M  G L   +R++     L     +N    +
Sbjct: 71  YVMAGVGSPYVSRLLGICLTSTVQLVTQLMPYGCLLDHVRENRG--RLGSQDLLNWCMQI 128
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  +SYL       +VHRD               + DFG  RLLD+D +      G    
Sbjct: 129 AKGMSYLED---VRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPI 185
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +     T +  ++S+GV   E++  G  P
Sbjct: 186 KWMALESILRRRFTHQSDVWSYGVTVWELMTFGAKP 221

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 30/226 (13%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +K+L H       + V + + ++ I EYME GSL   L+     I+L   + +++   +A
Sbjct: 57  MKQLQHQRLV-RLYAVVTQEPIYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIA 114
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGY 290
             ++++      + +HRD               +ADFG  RL+ D + + R        +
Sbjct: 115 EGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 171
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMGTH-----PGEXXXXXXXXXGPKIMLIDILY 345
            A E +     T K  ++SFG++  E++  TH     PG           P+++      
Sbjct: 172 TAPEAINYGTFTIKSDVWSFGILLTEIV--THGRIPYPG--------MTNPEVIQNLERG 221
Query: 346 QRLSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            R+  P N  +++ Q + L       C + +P+ RPT   +   LE
Sbjct: 222 YRMVRPDNCPEELYQLMRL-------CWKERPEDRPTFDYLRSVLE 260

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +GSL   L+ +     L   + +++   +A
Sbjct: 60  MKKLRH-EKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKY-LRLPQLVDMAAQIA 117
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 118 SGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIK 173
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG             +  ++  Y+
Sbjct: 174 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-------LDQVERGYR 226
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R +P+ RPT + +   LE
Sbjct: 227 MPCPPECPESLHDLM------CQCWRKEPEERPTFEYLQAFLE 263

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 30/226 (13%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +K+L H       + V + + ++ I EYME GSL   L+     I+L   + +++   +A
Sbjct: 62  MKQLQHQRLV-RLYAVVTQEPIYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIA 119
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGY 290
             ++++      + +HRD               +ADFG  RL+ D + + R        +
Sbjct: 120 EGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 176
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMGTH-----PGEXXXXXXXXXGPKIMLIDILY 345
            A E +     T K  ++SFG++  E++  TH     PG           P+++      
Sbjct: 177 TAPEAINYGTFTIKSDVWSFGILLTEIV--THGRIPYPG--------MTNPEVIQNLERG 226
Query: 346 QRLSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            R+  P N  +++ Q + L       C + +P+ RPT   +   LE
Sbjct: 227 YRMVRPDNCPEELYQLMRL-------CWKERPEDRPTFDYLRSVLE 265

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +GSL   L+ +     L   + +++   +A
Sbjct: 316 MKKLRH-EKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKY-LRLPQLVDMAAQIA 373
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 374 SGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIK 429
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG             +  ++  Y+
Sbjct: 430 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-------LDQVERGYR 482
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R +P+ RPT + +   LE
Sbjct: 483 MPCPPECPESLHDLM------CQCWRKEPEERPTFEYLQAFLE 519

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 26/224 (11%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +K+L H       + V + + ++ I EYME GSL   L+     I+L   + +++   +A
Sbjct: 67  MKQLQHQRLV-RLYAVVTQEPIYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIA 124
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGY 290
             ++++      + +HRD               +ADFG  RL+ D + + R        +
Sbjct: 125 EGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 181
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQR 347
            A E +     T K  ++SFG++  E++      +PG           P+++       R
Sbjct: 182 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--------MTNPEVIQNLERGYR 233
Query: 348 LSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           +  P N  +++ Q + L       C + +P+ RPT   +   LE
Sbjct: 234 MVRPDNCPEELYQLMRL-------CWKERPEDRPTFDYLRSVLE 270

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 26/224 (11%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +K+L H       + V + + ++ I EYME GSL   L+     I+L   + +++   +A
Sbjct: 68  MKQLQHQRLV-RLYAVVTQEPIYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIA 125
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGY 290
             ++++      + +HRD               +ADFG  RL+ D + + R        +
Sbjct: 126 EGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 182
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQR 347
            A E +     T K  ++SFG++  E++      +PG           P+++       R
Sbjct: 183 TAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG--------MTNPEVIQNLERGYR 234
Query: 348 LSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           +  P N  +++ Q + L       C + +P+ RPT   +   LE
Sbjct: 235 MVRPDNCPEELYQLMRL-------CWKERPEDRPTFDYLRSVLE 271

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 10/138 (7%)
Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV     +  I E+ME GSL   LR +D    +   + + +++ +A  + YL      + 
Sbjct: 102 VVTKSTPVMIITEFMENGSLDSFLRQNDGQFTV--IQLVGMLRGIAAGMKYL---ADMNY 156
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYG-----YIALELVYTMV 300
           VHRD               V+DFG  R L+ D+S+ T  +   G     + A E +    
Sbjct: 157 VHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRK 216
Query: 301 VTEKCVIYSFGVVALEVL 318
            T    ++S+G+V  EV+
Sbjct: 217 FTSASDVWSYGIVMWEVM 234

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +GSL   L+ +     L   + +++   +A
Sbjct: 233 MKKLRH-EKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKY-LRLPQLVDMAAQIA 290
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 291 SGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIK 346
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG             +  ++  Y+
Sbjct: 347 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-------LDQVERGYR 399
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R +P+ RPT + +   LE
Sbjct: 400 MPCPPECPESLHDLM------CQCWRKEPEERPTFEYLQAFLE 436

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +GSL   L+ +     L   + +++   +A
Sbjct: 233 MKKLRH-EKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKY-LRLPQLVDMAAQIA 290
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 291 SGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIK 346
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG             +  ++  Y+
Sbjct: 347 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-------LDQVERGYR 399
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R +P+ RPT + +   LE
Sbjct: 400 MPCPPECPESLHDLM------CQCWRKEPEERPTFEYLQAFLE 436

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 30/226 (13%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +K+L H       + V + + ++ I EYME GSL   L+     I+L   + +++   +A
Sbjct: 72  MKQLQHQRLV-RLYAVVTQEPIYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIA 129
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGY 290
             ++++      + +HRD               +ADFG  RL+ D + + R        +
Sbjct: 130 EGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 186
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMGTH-----PGEXXXXXXXXXGPKIMLIDILY 345
            A E +     T K  ++SFG++  E++  TH     PG           P+++      
Sbjct: 187 TAPEAINYGTFTIKSDVWSFGILLTEIV--THGRIPYPG--------MTNPEVIQNLERG 236
Query: 346 QRLSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            R+  P N  +++ Q + L       C + +P+ RPT   +   LE
Sbjct: 237 YRMVRPDNCPEELYQLMRL-------CWKERPEDRPTFDYLRSVLE 275

>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The Gefitinib/erlotinib Resistant Egfr Kinase Domain L858r+t790m Length = 329

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 12  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 70
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 71  YVMASVDNPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 128
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 129 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPI 185
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 186 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 221

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 32/227 (14%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H +     + V S + ++ + EYM +GSL   L+ D E   L     +++   VA
Sbjct: 58  MKKLKHDKLV-QLYAVVSEEPIYIVTEYMNKGSLLDFLK-DGEGRALKLPNLVDMAAQVA 115
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + +HRD               +ADFG  RL++ D+     Q   +   
Sbjct: 116 AGMAYIERM---NYIHRDLRSANILVGNGLICKIADFGLARLIE-DNEXTARQGAKFPIK 171
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALE-VLMGTHPGEXXXXXXXXXGPKIMLIDILYQ-- 346
           + A E       T K  ++SFG++  E V  G  P            P +   ++L Q  
Sbjct: 172 WTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVP-----------YPGMNNREVLEQVE 220
Query: 347 ---RLSPPINQKIIQDI-ILVSTIALACLRSKPKSRPTMQRISQELE 389
              R+  P      QD  I +  + + C +  P+ RPT + +   LE
Sbjct: 221 RGYRMPCP------QDCPISLHELMIHCWKKDPEERPTFEYLQSFLE 261

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +GSL   L+ +     L   + +++   +A
Sbjct: 64  MKKLRH-EKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKGETGKY-LRLPQLVDMSAQIA 121
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 122 SGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEWTARQGAKFPIK 177
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG             +  ++  Y+
Sbjct: 178 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-------LDQVERGYR 230
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R +P+ RPT + +   LE
Sbjct: 231 MPCPPECPESLHDLM------CQCWRKEPEERPTFEYLQAFLE 267

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +GSL   L+ +     L   + +++   +A
Sbjct: 64  MKKLRH-EKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKGETGKY-LRLPQLVDMSAQIA 121
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 122 SGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIK 177
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG             +  ++  Y+
Sbjct: 178 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-------LDQVERGYR 230
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R +P+ RPT + +   LE
Sbjct: 231 MPCPPECPESLHDLM------CQCWRKEPEERPTFEYLQAFLE 267

>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In Complex With Mig6 Peptide Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 12  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 70
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 71  YVMASVDNPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 128
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 129 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPI 185
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 186 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 221

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +GSL   L+ +     L   + +++   +A
Sbjct: 233 MKKLRH-EKLVQLYAVVSEEPIYIVGEYMSKGSLLDFLKGETGKY-LRLPQLVDMAAQIA 290
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 291 SGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIK 346
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG             +  ++  Y+
Sbjct: 347 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-------LDQVERGYR 399
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R +P+ RPT + +   LE
Sbjct: 400 MPCPPECPESLHDLM------CQCWRKEPEERPTFEYLQAFLE 436

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 11  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 69
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 70  YVMASVDNPHVCRLLGICLTSTVQLIMQLMPFGXLLDYVREHKDNIGSQYL--LNWCVQI 127
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 128 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 184
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 185 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 220

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 33/197 (16%)
Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFVVYSPQCM---------------- 193
           IG G   +VY A ++  G+ VA+++++  +      ++     M                
Sbjct: 29  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 88
Query: 194 -----FFIYEYMERGSLFCVLRDD--DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIV 246
                + + EY+  GSL  V+ +   DE       +   + +    AL +LH +    ++
Sbjct: 89  VGDELWVVMEYLAGGSLTDVVTETCMDEG------QIAAVCRECLQALEFLHSN---QVI 139
Query: 247 HRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCV 306
           HRD               + DFG    +  + S R+   GT  ++A E+V       K  
Sbjct: 140 HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVD 199
Query: 307 IYSFGVVALEVLMGTHP 323
           I+S G++A+E++ G  P
Sbjct: 200 IWSLGIMAIEMIEGEPP 216

>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic Mutant L858r Egfr Kinase Domain Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 12  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 70
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 71  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 128
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 129 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPI 185
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 186 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 221

>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285 Length = 331

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 14  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 72
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 73  YVMASVDNPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 130
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 131 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPI 187
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 188 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 223

>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In Complex With Amppnp Length = 334

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 17  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 75
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 76  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 133
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 134 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPI 190
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 191 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 226

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 33/197 (16%)
Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFVVYSPQCM---------------- 193
           IG G   +VY A ++  G+ VA+++++  +      ++     M                
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 87
Query: 194 -----FFIYEYMERGSLFCVLRDD--DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIV 246
                + + EY+  GSL  V+ +   DE       +   + +    AL +LH +    ++
Sbjct: 88  VGDELWVVMEYLAGGSLTDVVTETCMDEG------QIAAVCRECLQALEFLHSN---QVI 138
Query: 247 HRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCV 306
           HRD               + DFG    +  + S R+   GT  ++A E+V       K  
Sbjct: 139 HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVD 198
Query: 307 IYSFGVVALEVLMGTHP 323
           I+S G++A+E++ G  P
Sbjct: 199 IWSLGIMAIEMIEGEPP 215

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 13  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 71
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 72  YVMASVDNPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 129
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 130 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 186
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 187 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 222

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 12  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 70
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 71  YVMASVDNPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 128
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 129 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 185
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 186 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 221

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 14  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 72
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 73  YVMASVDNPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 130
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 131 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 187
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 188 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 223

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 10  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 69  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGXLLDYVREHKDNIGSQYL--LNWCVQI 126
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 127 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 183
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 184 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 219

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 17  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 75
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 76  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 133
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 134 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 190
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 191 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 226

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 11  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 69
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 70  YVMASVDNPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 127
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 128 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 184
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 185 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 220

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 10  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 69  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 126
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 127 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 183
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 184 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 219

>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In Complex With Aee788 Length = 327

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 10  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 69  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 126
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 127 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPI 183
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 184 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 219

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 20  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 78
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 79  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 136
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 137 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 193
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 194 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 229

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 10  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 69  YVMASVDNPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 126
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 127 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 183
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 184 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 219

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 33/197 (16%)
Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFVVYSPQCM---------------- 193
           IG G   +VY A ++  G+ VA+++++  +      ++     M                
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 87
Query: 194 -----FFIYEYMERGSLFCVLRDD--DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIV 246
                + + EY+  GSL  V+ +   DE       +   + +    AL +LH +    ++
Sbjct: 88  VGDELWVVMEYLAGGSLTDVVTETCMDEG------QIAAVCRECLQALEFLHSN---QVI 138
Query: 247 HRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCV 306
           HRD               + DFG    +  + S R+   GT  ++A E+V       K  
Sbjct: 139 HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVD 198
Query: 307 IYSFGVVALEVLMGTHP 323
           I+S G++A+E++ G  P
Sbjct: 199 IWSLGIMAIEMIEGEPP 215

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 13  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 71
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 72  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 129
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 130 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 186
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 187 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 222

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 91/223 (40%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +GSL   L+ +     L   + +++   +A
Sbjct: 67  MKKLRH-EKLVQLYAVVSEEPIYIVIEYMSKGSLLDFLKGEMGKY-LRLPQLVDMAAQIA 124
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 125 SGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEXTARQGAKFPIK 180
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG                ++  Y+
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQ-------VERGYR 233
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R  P+ RPT + +   LE
Sbjct: 234 MPCPPECPESLHDLM------CQCWRKDPEERPTFEYLQAFLE 270

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 54/275 (19%)
Query: 151 IGTGGYDSVYKAEL-PDGKVVALKKLHHSETEDSAFVV---------------------- 187
           IG GG+  V+K  L  D  VVA+K L   ++E    ++                      
Sbjct: 27  IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86
Query: 188 ------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC 241
                 ++P  M  + E++  G L+  L D  +A  + W+ ++ ++  +A  + Y+ +  
Sbjct: 87  KLYGLMHNPPRM--VMEFVPCGDLYHRLLD--KAHPIKWSVKLRLMLDIALGIEYMQNQ- 141
Query: 242 TPSIVHRDXXXXXXXXXXXXE-----AFVADFGTVRLLDVDSSNRTLQAGTYGYIALELV 296
            P IVHRD            E     A VADFG  +   V S +  L  G + ++A E +
Sbjct: 142 NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQ-SVHSVSGLL--GNFQWMAPETI 198
Query: 297 --YTMVVTEKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQR-LSPPIN 353
                  TEK   YSF ++   +L G  P +           KI  I+++ +  L P I 
Sbjct: 199 GAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYG------KIKFINMIREEGLRPTIP 252
Query: 354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
           +       L + I L C    PK RP    I +EL
Sbjct: 253 EDCPPR--LRNVIEL-CWSGDPKKRPHFSYIVKEL 284

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 13  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 71
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 72  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 129
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 130 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 186
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 187 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 222

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 13  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 71
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 72  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 129
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 130 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 186
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 187 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 222

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 12  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 70
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 71  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 128
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 129 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 185
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 186 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 221

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 35/222 (15%)
Query: 131 GKILYENLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS------- 178
           G +    ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       
Sbjct: 1   GAMALLRILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANK 59
Query: 179 ETEDSAFVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRM 224
           E  D A+V+ S                 +  I + M  G L   +R+  + I   +   +
Sbjct: 60  EILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--L 117
Query: 225 NIVKSVAHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQ 284
           N    +A  ++YL       +VHRD               + DFG  +LL  +      +
Sbjct: 118 NWCVQIAEGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAE 174
Query: 285 AGTY--GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            G     ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 175 GGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 216

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 35  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 93
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 94  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 151
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 152 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 208
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 209 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 244

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + +  + EYM +GSL   L+ +     L   + +++   +A
Sbjct: 57  MKKLRH-EKLVQLYAVVSEEPIXIVTEYMSKGSLLDFLKGETGKY-LRLPQLVDMAAQIA 114
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 115 SGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEXTARQGAKFPIK 170
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG             +  ++  Y+
Sbjct: 171 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-------LDQVERGYR 223
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R +P+ RPT + +   LE
Sbjct: 224 MPCPPECPESLHDLM------CQCWRKEPEERPTFEYLQAFLE 260

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 10  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 69  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 126
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 127 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 183
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 184 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 219

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +GSL   L+ +     L   + +++   +A
Sbjct: 67  MKKLRH-EKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKY-LRLPQLVDMAAQIA 124
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 125 SGMAYVERM---NYVHRDLAAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIK 180
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG             +  ++  Y+
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-------LDQVERGYR 233
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R  P+ RPT + +   LE
Sbjct: 234 MPCPPECPESLHDLM------CQCWRKDPEERPTFEYLQAFLE 270

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 30/226 (13%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +K+L H       + V + + ++ I EYME GSL   L+     I+L   + +++   +A
Sbjct: 58  MKQLQHQRLV-RLYAVVTQEPIYIITEYMENGSLVDFLKTPS-GIKLTINKLLDMAAQIA 115
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGY 290
             ++++      + +HR+               +ADFG  RL+ D + + R        +
Sbjct: 116 EGMAFIEER---NYIHRNLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKW 172
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMGTH-----PGEXXXXXXXXXGPKIMLIDILY 345
            A E +     T K  ++SFG++  E++  TH     PG           P+++      
Sbjct: 173 TAPEAINYGTFTIKSDVWSFGILLTEIV--THGRIPYPG--------MTNPEVIQNLERG 222
Query: 346 QRLSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            R+  P N  +++ Q + L       C + +P+ RPT   +   LE
Sbjct: 223 YRMVRPDNCPEELYQLMRL-------CWKERPEDRPTFDYLRSVLE 261

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 16  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 74
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 75  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 132
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 133 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 189
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 190 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 225

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 91/223 (40%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +GSL   L+ +     L   + +++   +A
Sbjct: 56  MKKLRH-EKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKY-LRLPQLVDMAAQIA 113
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 114 SGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIK 169
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG                ++  Y+
Sbjct: 170 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQ-------VERGYR 222
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R  P+ RPT + +   LE
Sbjct: 223 MPCPPECPESLHDLM------CQCWRKDPEERPTFEYLQAFLE 259

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 79/204 (38%), Gaps = 36/204 (17%)
Query: 151 IGTGGYDSVYKAEL--PDGKV---VALKKLHHSETEDSAF-------------------- 185
           IG G +  VYK  L    GK    VA+K L    TE                        
Sbjct: 52  IGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRL 111
Query: 186 --VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
             V+   + M  I EYME G+L   LR+ D   E +  + + +++ +A  + YL      
Sbjct: 112 EGVISKYKPMMIITEYMENGALDKFLREKDG--EFSVLQLVGMLRGIAAGMKYL---ANM 166
Query: 244 SIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAG---TYGYIALELVYTMV 300
           + VHRD               V+DFG  R+L+ D       +G      + A E +    
Sbjct: 167 NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRK 226
Query: 301 VTEKCVIYSFGVVALEVLM-GTHP 323
            T    ++SFG+V  EV+  G  P
Sbjct: 227 FTSASDVWSFGIVMWEVMTYGERP 250

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +GSL   L+  +    L   + +++   +A
Sbjct: 58  MKKLRH-EKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLK-GEMGKYLRLPQLVDMAAQIA 115
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 116 SGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIK 171
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG             +  ++  Y+
Sbjct: 172 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-------LDQVERGYR 224
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R  P+ RPT + +   LE
Sbjct: 225 MPCPPECPESLHDLM------CQCWRKDPEERPTFEYLQAFLE 261

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +GSL   L+ +     L   + +++   +A
Sbjct: 67  MKKLRH-EKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGEMGKY-LRLPQLVDMAAQIA 124
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 125 SGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIK 180
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG             +  ++  Y+
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-------LDQVERGYR 233
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R  P+ RPT + +   LE
Sbjct: 234 MPCPPECPESLHDLM------CQCWRKDPEERPTFEYLQAFLE 270

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 91/223 (40%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +GSL   L+ +     L   + +++   +A
Sbjct: 67  MKKLRH-EKLVQLYAVVSEEPIYIVIEYMSKGSLLDFLKGEMGKY-LRLPQLVDMAAQIA 124
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 125 SGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIK 180
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG                ++  Y+
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQ-------VERGYR 233
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R  P+ RPT + +   LE
Sbjct: 234 MPCPPECPESLHDLM------CQCWRKDPEERPTFEYLQAFLE 270

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 33/197 (16%)
Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFVVYSPQCM---------------- 193
           IG G   +VY A ++  G+ VA+++++  +      ++     M                
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 87
Query: 194 -----FFIYEYMERGSLFCVLRDD--DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIV 246
                + + EY+  GSL  V+ +   DE       +   + +    AL +LH +    ++
Sbjct: 88  VGDELWVVMEYLAGGSLTDVVTETCMDEG------QIAAVCRECLQALEFLHSN---QVI 138
Query: 247 HRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCV 306
           HRD               + DFG    +  + S R+   GT  ++A E+V       K  
Sbjct: 139 HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSEMVGTPYWMAPEVVTRKAYGPKVD 198
Query: 307 IYSFGVVALEVLMGTHP 323
           I+S G++A+E++ G  P
Sbjct: 199 IWSLGIMAIEMIEGEPP 215

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 91/216 (42%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 4   RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 62
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 63  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 120
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 121 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 177
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 178 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 213

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 80/204 (39%), Gaps = 29/204 (14%)
Query: 143 EYFHIRYCIGTGGYDSVYK-AELPDGKVVALKKLHH---SETEDSAFVV----------- 187
           E + + Y IGTG Y    K     DGK++  K+L +   +E E    V            
Sbjct: 6   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 65
Query: 188 -----------YSPQCMFFIYEYMERGSLFCVL-RDDDEAIELNWTRRMNIVKSVAHALS 235
                       +   ++ + EY E G L  V+ +   E   L+    + ++  +  AL 
Sbjct: 66  NIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALK 125
Query: 236 YLHH--DCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIAL 293
             H   D   +++HRD               + DFG  R+L+ D+S      GT  Y++ 
Sbjct: 126 ECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSP 185
Query: 294 ELVYTMVVTEKCVIYSFGVVALEV 317
           E +  M   EK  I+S G +  E+
Sbjct: 186 EQMNRMSYNEKSDIWSLGCLLYEL 209

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 80/205 (39%), Gaps = 29/205 (14%)
Query: 142 TEYFHIRYCIGTGGYDSVYK-AELPDGKVVALKKLHH---SETEDSAFVV---------- 187
            E + + Y IGTG Y    K     DGK++  K+L +   +E E    V           
Sbjct: 5   AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKH 64
Query: 188 ------------YSPQCMFFIYEYMERGSLFCVL-RDDDEAIELNWTRRMNIVKSVAHAL 234
                        +   ++ + EY E G L  V+ +   E   L+    + ++  +  AL
Sbjct: 65  PNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLAL 124
Query: 235 SYLHH--DCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIA 292
              H   D   +++HRD               + DFG  R+L+ D+S      GT  Y++
Sbjct: 125 KECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMS 184
Query: 293 LELVYTMVVTEKCVIYSFGVVALEV 317
            E +  M   EK  I+S G +  E+
Sbjct: 185 PEQMNRMSYNEKSDIWSLGCLLYEL 209

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +GSL   L+ +     L   + +++   +A
Sbjct: 67  MKKLRH-EKLVQLYAVVSEEPIYIVCEYMSKGSLLDFLKGEMGKY-LRLPQLVDMAAQIA 124
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 125 SGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIK 180
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG             +  ++  Y+
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-------LDQVERGYR 233
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R  P+ RPT + +   LE
Sbjct: 234 MPCPPECPESLHDLM------CQCWRKDPEERPTFEYLQAFLE 270

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 80/197 (40%), Gaps = 33/197 (16%)
Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFVVYSPQCM---------------- 193
           IG G   +VY A ++  G+ VA+++++  +      ++     M                
Sbjct: 29  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 88
Query: 194 -----FFIYEYMERGSLFCVLRDD--DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIV 246
                + + EY+  GSL  V+ +   DE       +   + +    AL +LH +    ++
Sbjct: 89  VGDELWVVMEYLAGGSLTDVVTETCMDEG------QIAAVCRECLQALEFLHSN---QVI 139
Query: 247 HRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCV 306
           HR+               + DFG    +  + S R+   GT  ++A E+V       K  
Sbjct: 140 HRNIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVD 199
Query: 307 IYSFGVVALEVLMGTHP 323
           I+S G++A+E++ G  P
Sbjct: 200 IWSLGIMAIEMIEGEPP 216

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 90/225 (40%), Gaps = 38/225 (16%)
Query: 131 GKILYENLIDATEYFHIRYCIGTGGYDSVYKAEL--PDGK--VVALKKLH--HSETEDSA 184
           G + +   ID + Y  I   IG G +  V +  L  P  K   VA+K L   ++E +   
Sbjct: 3   GSMEFAKEIDVS-YVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRRE 61
Query: 185 F--------------------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRM 224
           F                    VV +   +  + E+ME G+L   LR +D    +   + +
Sbjct: 62  FLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTV--IQLV 119
Query: 225 NIVKSVAHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQ 284
            +++ +A  + YL      S VHRD               V+DFG  R L+ +SS+ T  
Sbjct: 120 GMLRGIASGMRYLAE---MSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYT 176
Query: 285 AGTYG-----YIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
           +   G     + A E +     T     +S+G+V  EV+  G  P
Sbjct: 177 SSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERP 221

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KK+ H E     + V S + ++ + EYM +GSL   L+  +    L   + +++   +A
Sbjct: 67  MKKIRH-EKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLK-GEMGKYLRLPQLVDMAAQIA 124
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 125 SGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIK 180
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG             +  ++  Y+
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-------LDQVERGYR 233
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R  P+ RPT + +   LE
Sbjct: 234 MPCPPECPESLHDLM------CQCWRKDPEERPTFEYLQAFLE 270

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +GSL   L+  +    L   + +++   +A
Sbjct: 234 MKKLRH-EKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLK-GEMGKYLRLPQLVDMAAQIA 291
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 292 SGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLGRLIE-DNEYTARQGAKFPIK 347
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG             +  ++  Y+
Sbjct: 348 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-------LDQVERGYR 400
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R  P+ RPT + +   LE
Sbjct: 401 MPCPPECPESLHDLM------CQCWRKDPEERPTFEYLQAFLE 437

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXX 252
           ++ + E+++ G+L  ++      + LN  +   + ++V  AL+YLH      ++HRD   
Sbjct: 117 LWVLMEFLQGGALTDIV----SQVRLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKS 169
Query: 253 XXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGV 312
                       ++DFG    +  D   R    GT  ++A E++   +   +  I+S G+
Sbjct: 170 DSILLTLDGRVKLSDFGFCAQISKDVPKRKXLVGTPYWMAPEVISRSLYATEVDIWSLGI 229
Query: 313 VALEVLMGTHP 323
           + +E++ G  P
Sbjct: 230 MVIEMVDGEPP 240

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 111/275 (40%), Gaps = 54/275 (19%)
Query: 151 IGTGGYDSVYKAEL-PDGKVVALKKLHHSETEDSAFVV---------------------- 187
           IG GG+  V+K  L  D  VVA+K L   ++E    ++                      
Sbjct: 27  IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86
Query: 188 ------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC 241
                 ++P  M  + E++  G L+  L D  +A  + W+ ++ ++  +A  + Y+ +  
Sbjct: 87  KLYGLMHNPPRM--VMEFVPCGDLYHRLLD--KAHPIKWSVKLRLMLDIALGIEYMQNQ- 141
Query: 242 TPSIVHRDXXXXXXXXXXXXE-----AFVADFGTVRLLDVDSSNRTLQAGTYGYIALELV 296
            P IVHRD            E     A VADF ++    V S +  L  G + ++A E +
Sbjct: 142 NPPIVHRDLRSPNIFLQSLDENAPVCAKVADF-SLSQQSVHSVSGLL--GNFQWMAPETI 198
Query: 297 --YTMVVTEKCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQR-LSPPIN 353
                  TEK   YSF ++   +L G  P +           KI  I+++ +  L P I 
Sbjct: 199 GAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYG------KIKFINMIREEGLRPTIP 252
Query: 354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
           +       L + I L C    PK RP    I +EL
Sbjct: 253 EDCPPR--LRNVIEL-CWSGDPKKRPHFSYIVKEL 284

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/270 (19%), Positives = 107/270 (39%), Gaps = 40/270 (14%)
Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV---------------- 186
           E   +   +G G +  V+ A       VA+K +        AF+                
Sbjct: 15  ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVK 74
Query: 187 ---VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
              V + + ++ I E+M +GSL   L+  DE  +    + ++    +A  ++++      
Sbjct: 75  LHAVVTKEPIYIITEFMAKGSLLDFLK-SDEGSKQPLPKLIDFSAQIAEGMAFIEQR--- 130
Query: 244 SIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGYIALELVYTMVVT 302
           + +HRD               +ADFG  R++ D + + R        + A E +     T
Sbjct: 131 NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFT 190
Query: 303 EKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQD 359
            K  ++SFG++ +E++      +PG           P++  I  L +    P  +   ++
Sbjct: 191 IKSDVWSFGILLMEIVTYGRIPYPG--------MSNPEV--IRALERGYRMPRPENCPEE 240
Query: 360 IILVSTIALACLRSKPKSRPTMQRISQELE 389
           +     I + C +++P+ RPT + I   L+
Sbjct: 241 LY---NIMMRCWKNRPEERPTFEYIQSVLD 267

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +G L   L+ +     L   + +++   +A
Sbjct: 67  MKKLRH-EKLVQLYAVVSEEPIYIVMEYMSKGCLLDFLKGEMGKY-LRLPQLVDMAAQIA 124
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 125 SGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIK 180
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG                ++  Y+
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQ-------VERGYR 233
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R  P+ RPT + +   LE
Sbjct: 234 MPCPPECPESLHDLMC------QCWRKDPEERPTFEYLQAFLE 270

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 76/204 (37%), Gaps = 33/204 (16%)
Query: 145 FHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAF------------------ 185
           F I   +G G + +VY A     K ++ALK L  S+ E                      
Sbjct: 17  FDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPN 76
Query: 186 ------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH 239
                   +  + ++ + E+  RG L+  L+      E    R    ++ +A AL Y H 
Sbjct: 77  ILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDE---QRSATFMEELADALHYCHE 133
Query: 240 DCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM 299
                ++HRD            E  +ADFG    +   S  R    GT  Y+  E++   
Sbjct: 134 R---KVIHRDIKPENLLMGYKGELKIADFGWS--VHAPSLRRRXMCGTLDYLPPEMIEGK 188
Query: 300 VVTEKCVIYSFGVVALEVLMGTHP 323
              EK  ++  GV+  E L+G  P
Sbjct: 189 THDEKVDLWCAGVLCYEFLVGMPP 212

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 20/208 (9%)
Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV   + +  I EYME GSL   LR +D    +   + + +++ +   + YL      S 
Sbjct: 98  VVTKCKPVMIITEYMENGSLDAFLRKNDGRFTV--IQLVGMLRGIGSGMKYLSD---MSA 152
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVD-SSNRTLQAGT--YGYIALELVYTMVVT 302
           VHRD               V+DFG  R+L+ D  +  T + G     + A E +     T
Sbjct: 153 VHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFT 212
Query: 303 EKCVIYSFGVVALEVL-MGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDII 361
               ++S+G+V  EV+  G  P              I  I+  Y RL PP++       I
Sbjct: 213 SASDVWSYGIVMWEVMSYGERPYWDMSNQDV-----IKAIEEGY-RLPPPMDCP-----I 261
Query: 362 LVSTIALACLRSKPKSRPTMQRISQELE 389
            +  + L C + +   RP   +I   L+
Sbjct: 262 ALHQLMLDCWQKERSDRPKFGQIVNMLD 289

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 24/223 (10%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +KKL H E     + V S + ++ + EYM +G L   L+ +     L   + +++   +A
Sbjct: 67  MKKLRH-EKLVQLYAVVSEEPIYIVTEYMSKGCLLDFLKGE-MGKYLRLPQLVDMAAQIA 124
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY--G 289
             ++Y+      + VHRD               VADFG  RL++ D+     Q   +   
Sbjct: 125 SGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIK 180
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQ 346
           + A E       T K  ++SFG++  E+       +PG             +  ++  Y+
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREV-------LDQVERGYR 233
Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              PP   + + D++        C R  P+ RPT + +   LE
Sbjct: 234 MPCPPECPESLHDLMC------QCWRKDPEERPTFEYLQAFLE 270

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  +G+G + +VYK   +P+G+ V    A+ +L  +       E  D A
Sbjct: 44  RILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIMELREATSPKANKEILDEA 102
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 103 YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 160
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 161 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 217
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 218 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 253

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 10/138 (7%)
Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV     +  I E+ME GSL   LR +D    +   + + +++ +A  + YL      + 
Sbjct: 76  VVTKSTPVMIITEFMENGSLDSFLRQNDGQFTV--IQLVGMLRGIAAGMKYL---ADMNY 130
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYG-----YIALELVYTMV 300
           VHR                V+DFG  R L+ D+S+ T  +   G     + A E +    
Sbjct: 131 VHRALAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRK 190
Query: 301 VTEKCVIYSFGVVALEVL 318
            T    ++S+G+V  EV+
Sbjct: 191 FTSASDVWSYGIVMWEVM 208

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 20/208 (9%)
Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV   + +  I EYME GSL   LR +D    +   + + +++ +   + YL      S 
Sbjct: 83  VVTKCKPVMIITEYMENGSLDAFLRKNDGRFTV--IQLVGMLRGIGSGMKYLSD---MSY 137
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVD-SSNRTLQAGT--YGYIALELVYTMVVT 302
           VHRD               V+DFG  R+L+ D  +  T + G     + A E +     T
Sbjct: 138 VHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFT 197
Query: 303 EKCVIYSFGVVALEVL-MGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDII 361
               ++S+G+V  EV+  G  P              I  I+  Y RL PP++       I
Sbjct: 198 SASDVWSYGIVMWEVMSYGERPYWDMSNQDV-----IKAIEEGY-RLPPPMDCP-----I 246
Query: 362 LVSTIALACLRSKPKSRPTMQRISQELE 389
            +  + L C + +   RP   +I   L+
Sbjct: 247 ALHQLMLDCWQKERSDRPKFGQIVNMLD 274

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 20/208 (9%)
Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV   + +  I EYME GSL   LR +D    +   + + +++ +   + YL      S 
Sbjct: 77  VVTKCKPVMIITEYMENGSLDAFLRKNDGRFTV--IQLVGMLRGIGSGMKYLSD---MSY 131
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVD-SSNRTLQAGT--YGYIALELVYTMVVT 302
           VHRD               V+DFG  R+L+ D  +  T + G     + A E +     T
Sbjct: 132 VHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFT 191
Query: 303 EKCVIYSFGVVALEVL-MGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDII 361
               ++S+G+V  EV+  G  P              I  I+  Y RL PP++       I
Sbjct: 192 SASDVWSYGIVMWEVMSYGERPYWDMSNQDV-----IKAIEEGY-RLPPPMDCP-----I 240
Query: 362 LVSTIALACLRSKPKSRPTMQRISQELE 389
            +  + L C + +   RP   +I   L+
Sbjct: 241 ALHQLMLDCWQKERSDRPKFGQIVNMLD 268

>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain (G719sT790M) IN The Apo Form Length = 334

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  + +G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 17  RILKETEFKKIK-VLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 75
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 76  YVMASVDNPHVCRLLGICLTSTVQLIMQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 133
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 134 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 190
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 191 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 226

>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s) Length = 334

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  + +G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 17  RILKETEFKKIK-VLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 75
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 76  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 133
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 134 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 190
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 191 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 226

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 76/204 (37%), Gaps = 33/204 (16%)
Query: 145 FHIRYCIGTGGYDSVYKAELPDGK-VVALKKLHHSETEDSAF------------------ 185
           F I   +G G + +VY A     K ++ALK L  S+ E                      
Sbjct: 16  FDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPN 75
Query: 186 ------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH 239
                   +  + ++ + E+  RG L+  L+      E    R    ++ +A AL Y H 
Sbjct: 76  ILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDE---QRSATFMEELADALHYCHE 132
Query: 240 DCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM 299
                ++HRD            E  +ADFG    +   S  R    GT  Y+  E++   
Sbjct: 133 R---KVIHRDIKPENLLMGYKGELKIADFGWS--VHAPSLRRRXMCGTLDYLPPEMIEGK 187
Query: 300 VVTEKCVIYSFGVVALEVLMGTHP 323
              EK  ++  GV+  E L+G  P
Sbjct: 188 THDEKVDLWCAGVLCYEFLVGMPP 211

>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In Complex With Amp-Pnp Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 35/216 (16%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE+  I+  + +G + +VYK   +P+G+ V    A+K+L  +       E  D A
Sbjct: 10  RILKETEFKKIK-VLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
           +V+ S                 +  I + M  G L   +R+  + I   +   +N    +
Sbjct: 69  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYL--LNWCVQI 126
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY-- 288
           A  ++YL       +VHRD               + DFG  +LL  +      + G    
Sbjct: 127 AKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPI 183
Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            ++ALE +   + T +  ++S+GV   E++  G+ P
Sbjct: 184 KWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKP 219

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/270 (19%), Positives = 107/270 (39%), Gaps = 40/270 (14%)
Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV---------------- 186
           E   +   +G G +  V+ A       VA+K +        AF+                
Sbjct: 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVK 247
Query: 187 ---VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
              V + + ++ I E+M +GSL   L+  DE  +    + ++    +A  ++++      
Sbjct: 248 LHAVVTKEPIYIITEFMAKGSLLDFLK-SDEGSKQPLPKLIDFSAQIAEGMAFIEQR--- 303
Query: 244 SIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGYIALELVYTMVVT 302
           + +HRD               +ADFG  R++ D + + R        + A E +     T
Sbjct: 304 NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFT 363
Query: 303 EKCVIYSFGVVALEVLMG---THPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQD 359
            K  ++SFG++ +E++      +PG           P++  I  L +    P  +   ++
Sbjct: 364 IKSDVWSFGILLMEIVTYGRIPYPG--------MSNPEV--IRALERGYRMPRPENCPEE 413
Query: 360 IILVSTIALACLRSKPKSRPTMQRISQELE 389
           +     I + C +++P+ RPT + I   L+
Sbjct: 414 LY---NIMMRCWKNRPEERPTFEYIQSVLD 440

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 84/212 (39%), Gaps = 37/212 (17%)
Query: 144 YFHIRYCIGTGGYDSVYKAEL--PDGK--VVALKKLH--HSETEDSAF------------ 185
           Y  I   IG G +  V +  L  P  K   VA+K L   ++E +   F            
Sbjct: 17  YVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEH 76
Query: 186 --------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL 237
                   VV +   +  + E+ME G+L   LR +D    +   + + +++ +A  + YL
Sbjct: 77  PNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTV--IQLVGMLRGIASGMRYL 134
Query: 238 HHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYG-----YIA 292
                 S VHRD               V+DFG  R L+ +SS+ T  +   G     + A
Sbjct: 135 ---AEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTETSSLGGKIPIRWTA 191
Query: 293 LELVYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
            E +     T     +S+G+V  EV+  G  P
Sbjct: 192 PEAIAFRKFTSASDAWSYGIVMWEVMSFGERP 223

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 29/205 (14%)
Query: 142 TEYFHIRYCIGTGGYDSVYK-AELPDGKVVALKKLHH---SETEDSAFVV---------- 187
            E + + Y IGTG Y    K     DGK++  K+L +   +E E    V           
Sbjct: 5   AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKH 64
Query: 188 ------------YSPQCMFFIYEYMERGSLFCVL-RDDDEAIELNWTRRMNIVKSVAHAL 234
                        +   ++ + EY E G L  V+ +   E   L+    + ++  +  AL
Sbjct: 65  PNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLAL 124
Query: 235 SYLHH--DCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIA 292
              H   D   +++HRD               + DFG  R+L+ D        GT  Y++
Sbjct: 125 KECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDEDFAKEFVGTPYYMS 184
Query: 293 LELVYTMVVTEKCVIYSFGVVALEV 317
            E +  M   EK  I+S G +  E+
Sbjct: 185 PEQMNRMSYNEKSDIWSLGCLLYEL 209

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 5/148 (3%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +K L H +      VV   + ++ I EYM +GSL   L+  DE  ++   + ++    +A
Sbjct: 62  MKTLQHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFLK-SDEGGKVLLPKLIDFSAQIA 120
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGY 290
             ++Y+      + +HRD               +ADFG  R++ D + + R        +
Sbjct: 121 EGMAYIERK---NYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKW 177
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVL 318
            A E +     T K  ++SFG++  E++
Sbjct: 178 TAPEAINFGCFTIKSDVWSFGILLYEIV 205

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 44/268 (16%)
Query: 151 IGTGGYDSVYK---------------AELPD------GKVVALKKLHHSETEDSAFVVYS 189
           IG+G + +VYK               A  P        +V  L+K  H       F+ YS
Sbjct: 20  IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI--LLFMGYS 77
Query: 190 --PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVH 247
             PQ +  + ++ E  SL+  L   +   E+   + ++I +  A  + YLH     SI+H
Sbjct: 78  TKPQ-LAIVTQWCEGSSLYHHLHASETKFEMK--KLIDIARQTARGMDYLH---AKSIIH 131
Query: 248 RDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQ--AGTYGYIALELVYTMVVTE-- 303
           RD               + DFG   +    S +   +  +G+  ++A E++         
Sbjct: 132 RDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYS 191
Query: 304 -KCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQ-RLSPPINQKIIQDII 361
            +  +Y+FG+V  E++ G  P             +  +I+++ +  LSP +++       
Sbjct: 192 FQSDVYAFGIVLYELMTGQLP-------YSNINNRDQIIEMVGRGSLSPDLSKVRSNCPK 244
Query: 362 LVSTIALACLRSKPKSRPTMQRISQELE 389
            +  +   CL+ K   RP+  RI  E+E
Sbjct: 245 RMKRLMAECLKKKRDERPSFPRILAEIE 272

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC-------TPSI 245
           ++ I  + E+GSL   L+    A  ++W    +I +++A  L+YLH D         P+I
Sbjct: 97  LWLITAFHEKGSLSDFLK----ANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAI 152
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTE 303
            HRD             A +ADFG     +   S  +   Q GT  Y+A E++   +  +
Sbjct: 153 SHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQ 212
Query: 304 KCV-----IYSFGVVALEV 317
           +       +Y+ G+V  E+
Sbjct: 213 RDAFLRIDMYAMGLVLWEL 231

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 82/214 (38%), Gaps = 54/214 (25%)
Query: 145 FHIRYCIGTGGYDSVY----------------KAELPDGKVVALKKLHHSETE------- 181
           F I   +GTG +  V+                K E+    VV LK++ H+  E       
Sbjct: 8   FQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEI----VVRLKQVEHTNDERLMLSIV 63
Query: 182 DSAFVV------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVK-----SV 230
              F++         Q +F I +Y+E G LF +LR           R  N V       V
Sbjct: 64  THPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS--------QRFPNPVAKFYAAEV 115
Query: 231 AHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYG 289
             AL YLH   +  I++RD               + DFG  + + DV         GT  
Sbjct: 116 CLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYX----LCGTPD 168
Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           YIA E+V T    +    +SFG++  E+L G  P
Sbjct: 169 YIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTP 202

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 11/134 (8%)
Query: 194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXXX 253
           + + EY++  +L  ++  +     +   R + ++     AL++ H +    I+HRD    
Sbjct: 92  YIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVIADACQALNFSHQN---GIIHRDVKPA 145
Query: 254 XXXXXXXXEAFVADFGTVRLLDVDSSNRTLQA----GTYGYIALELVYTMVVTEKCVIYS 309
                      V DFG  R +  DS N   Q     GT  Y++ E      V  +  +YS
Sbjct: 146 NILISATNAVKVVDFGIARAI-ADSGNSVXQTAAVIGTAQYLSPEQARGDSVDARSDVYS 204
Query: 310 FGVVALEVLMGTHP 323
            G V  EVL G  P
Sbjct: 205 LGCVLYEVLTGEPP 218

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 11/134 (8%)
Query: 194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXXX 253
           + + EY++  +L  ++  +     +   R + ++     AL++ H +    I+HRD    
Sbjct: 92  YIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVIADACQALNFSHQN---GIIHRDVKPA 145
Query: 254 XXXXXXXXEAFVADFGTVRLLDVDSSNRTLQA----GTYGYIALELVYTMVVTEKCVIYS 309
                      V DFG  R +  DS N   Q     GT  Y++ E      V  +  +YS
Sbjct: 146 NIMISATNAVKVMDFGIARAI-ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYS 204
Query: 310 FGVVALEVLMGTHP 323
            G V  EVL G  P
Sbjct: 205 LGCVLYEVLTGEPP 218

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 11/134 (8%)
Query: 194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXXX 253
           + + EY++  +L  ++  +     +   R + ++     AL++ H +    I+HRD    
Sbjct: 92  YIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVIADACQALNFSHQN---GIIHRDVKPA 145
Query: 254 XXXXXXXXEAFVADFGTVRLLDVDSSNRTLQA----GTYGYIALELVYTMVVTEKCVIYS 309
                      V DFG  R +  DS N   Q     GT  Y++ E      V  +  +YS
Sbjct: 146 NIMISATNAVKVMDFGIARAI-ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYS 204
Query: 310 FGVVALEVLMGTHP 323
            G V  EVL G  P
Sbjct: 205 LGCVLYEVLTGEPP 218

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 11/134 (8%)
Query: 194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXXX 253
           + + EY++  +L  ++  +     +   R + ++     AL++ H +    I+HRD    
Sbjct: 92  YIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVIADACQALNFSHQN---GIIHRDVKPA 145
Query: 254 XXXXXXXXEAFVADFGTVRLLDVDSSNRTLQA----GTYGYIALELVYTMVVTEKCVIYS 309
                      V DFG  R +  DS N   Q     GT  Y++ E      V  +  +YS
Sbjct: 146 NIMISATNAVKVMDFGIARAI-ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYS 204
Query: 310 FGVVALEVLMGTHP 323
            G V  EVL G  P
Sbjct: 205 LGCVLYEVLTGEPP 218

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV   + +  + EYME GSL   LR  D    +   + + +++ +A  + YL        
Sbjct: 114 VVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV--IQLVGMLRGIASGMKYL---SDMGY 168
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVD-SSNRTLQAGT--YGYIALELVYTMVVT 302
           VHRD               V+DFG  R+L+ D  +  T + G     + + E +     T
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLARVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFT 228
Query: 303 EKCVIYSFGVVALEVL-MGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDII 361
               ++S+G+V  EV+  G  P              I  +D  Y RL PP++        
Sbjct: 229 SASDVWSYGIVLWEVMSYGERPYWEMSNQDV-----IKAVDEGY-RLPPPMDCPAA---- 278
Query: 362 LVSTIALACLRSKPKSRPTMQRI 384
            +  + L C +    +RP  ++I
Sbjct: 279 -LYQLMLDCWQKDRNNRPKFEQI 300

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 11/134 (8%)
Query: 194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXXX 253
           + + EY++  +L  ++  +     +   R + ++     AL++ H +    I+HRD    
Sbjct: 92  YIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVIADACQALNFSHQN---GIIHRDVKPA 145
Query: 254 XXXXXXXXEAFVADFGTVRLLDVDSSNRTLQA----GTYGYIALELVYTMVVTEKCVIYS 309
                      V DFG  R +  DS N   Q     GT  Y++ E      V  +  +YS
Sbjct: 146 NIMISATNAVKVMDFGIARAI-ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYS 204
Query: 310 FGVVALEVLMGTHP 323
            G V  EVL G  P
Sbjct: 205 LGCVLYEVLTGEPP 218

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV   + +  + EYME GSL   LR  D    +   + + +++ +A  + YL        
Sbjct: 114 VVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV--IQLVGMLRGIASGMKYL---SDMGF 168
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVD-SSNRTLQAGT--YGYIALELVYTMVVT 302
           VHRD               V+DFG  R+L+ D  +  T + G     + + E +     T
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFT 228
Query: 303 EKCVIYSFGVVALEVL-MGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDII 361
               ++S+G+V  EV+  G  P              I  +D  Y RL PP++        
Sbjct: 229 SASDVWSYGIVLWEVMSYGERPYWEMSNQDV-----IKAVDEGY-RLPPPMDCPAA---- 278
Query: 362 LVSTIALACLRSKPKSRPTMQRI 384
            +  + L C +    +RP  ++I
Sbjct: 279 -LYQLMLDCWQKDRNNRPKFEQI 300

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 5/148 (3%)
Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +K L H +      VV   + ++ I E+M +GSL   L+  DE  ++   + ++    +A
Sbjct: 61  MKTLQHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLK-SDEGGKVLLPKLIDFSAQIA 119
Query: 232 HALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLL-DVDSSNRTLQAGTYGY 290
             ++Y+      + +HRD               +ADFG  R++ D + + R        +
Sbjct: 120 EGMAYIERK---NYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKW 176
Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVL 318
            A E +     T K  ++SFG++  E++
Sbjct: 177 TAPEAINFGCFTIKSNVWSFGILLYEIV 204

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 11/134 (8%)
Query: 194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXXX 253
           + + EY++  +L  ++  +     +   R + ++     AL++ H +    I+HRD    
Sbjct: 109 YIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVIADACQALNFSHQN---GIIHRDVKPA 162
Query: 254 XXXXXXXXEAFVADFGTVRLLDVDSSNRTLQA----GTYGYIALELVYTMVVTEKCVIYS 309
                      V DFG  R +  DS N   Q     GT  Y++ E      V  +  +YS
Sbjct: 163 NIMISATNAVKVMDFGIARAI-ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYS 221
Query: 310 FGVVALEVLMGTHP 323
            G V  EVL G  P
Sbjct: 222 LGCVLYEVLTGEPP 235

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV   + +  + EYME GSL   LR  D    +   + + +++ +A  + YL        
Sbjct: 114 VVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV--IQLVGMLRGIASGMKYL---SDMGY 168
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVD-SSNRTLQAGT--YGYIALELVYTMVVT 302
           VHRD               V+DFG  R+L+ D  +  T + G     + + E +     T
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFT 228
Query: 303 EKCVIYSFGVVALEVL-MGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDII 361
               ++S+G+V  EV+  G  P              I  +D  Y RL PP++        
Sbjct: 229 SASDVWSYGIVLWEVMSYGERPYWEMSNQDV-----IKAVDEGY-RLPPPMDCPAA---- 278
Query: 362 LVSTIALACLRSKPKSRPTMQRI 384
            +  + L C +    +RP  ++I
Sbjct: 279 -LYQLMLDCWQKDRNNRPKFEQI 300

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV   + +  + EYME GSL   LR  D    +   + + +++ +A  + YL        
Sbjct: 114 VVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV--IQLVGMLRGIASGMKYL---SDMGY 168
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVD-SSNRTLQAGT--YGYIALELVYTMVVT 302
           VHRD               V+DFG  R+L+ D  +  T + G     + + E +     T
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFT 228
Query: 303 EKCVIYSFGVVALEVL-MGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDII 361
               ++S+G+V  EV+  G  P              I  +D  Y RL PP++        
Sbjct: 229 SASDVWSYGIVLWEVMSYGERPYWEMSNQDV-----IKAVDEGY-RLPPPMDCPAA---- 278
Query: 362 LVSTIALACLRSKPKSRPTMQRI 384
            +  + L C +    +RP  ++I
Sbjct: 279 -LYQLMLDCWQKDRNNRPKFEQI 300

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 185 FVVYS--PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCT 242
           F+ YS  PQ +  + ++ E  SL+  L   +   E+   + ++I +  A  + YLH    
Sbjct: 85  FMGYSTKPQ-LAIVTQWCEGSSLYHHLHASETKFEMK--KLIDIARQTARGMDYLH---A 138
Query: 243 PSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQ--AGTYGYIALELVYTMV 300
            SI+HRD               + DFG        S +   +  +G+  ++A E++    
Sbjct: 139 KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQD 198
Query: 301 VTE---KCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQ-RLSPPINQKI 356
                 +  +Y+FG+V  E++ G  P             +  +I+++ +  LSP +++  
Sbjct: 199 SNPYSFQSDVYAFGIVLYELMTGQLP-------YSNINNRDQIIEMVGRGSLSPDLSKVR 251
Query: 357 IQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                 +  +   CL+ K   RP+  RI  E+E
Sbjct: 252 SNCPKRMKRLMAECLKKKRDERPSFPRILAEIE 284

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV   + +  + EYME GSL   LR  D    +   + + +++ +A  + YL        
Sbjct: 114 VVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV--IQLVGMLRGIASGMKYL---SDMGY 168
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVD-SSNRTLQAGT--YGYIALELVYTMVVT 302
           VHRD               V+DFG  R+L+ D  +  T + G     + + E +     T
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFT 228
Query: 303 EKCVIYSFGVVALEVL-MGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDII 361
               ++S+G+V  EV+  G  P              I  +D  Y RL PP++        
Sbjct: 229 SASDVWSYGIVLWEVMSYGERPYWEMSNQDV-----IKAVDEGY-RLPPPMDCPAA---- 278
Query: 362 LVSTIALACLRSKPKSRPTMQRI 384
            +  + L C +    +RP  ++I
Sbjct: 279 -LYQLMLDCWQKDRNNRPKFEQI 300

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV   + +  + EYME GSL   LR  D    +   + + +++ +A  + YL        
Sbjct: 114 VVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV--IQLVGMLRGIASGMKYL---SDMGY 168
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVD-SSNRTLQAGT--YGYIALELVYTMVVT 302
           VHRD               V+DFG  R+L+ D  +  T + G     + + E +     T
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFT 228
Query: 303 EKCVIYSFGVVALEVL-MGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDII 361
               ++S+G+V  EV+  G  P              I  +D  Y RL PP++        
Sbjct: 229 SASDVWSYGIVLWEVMSYGERPYWEMSNQDV-----IKAVDEGY-RLPPPMDCPAA---- 278
Query: 362 LVSTIALACLRSKPKSRPTMQRI 384
            +  + L C +    +RP  ++I
Sbjct: 279 -LYQLMLDCWQKDRNNRPKFEQI 300

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 185 FVVYS--PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCT 242
           F+ YS  PQ +  + ++ E  SL+  L   +   E+   + ++I +  A  + YLH    
Sbjct: 85  FMGYSTAPQ-LAIVTQWCEGSSLYHHLHASETKFEMK--KLIDIARQTARGMDYLH---A 138
Query: 243 PSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQ--AGTYGYIALELVYTMV 300
            SI+HRD               + DFG        S +   +  +G+  ++A E++    
Sbjct: 139 KSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQD 198
Query: 301 VTE---KCVIYSFGVVALEVLMGTHPGEXXXXXXXXXGPKIMLIDILYQ-RLSPPINQKI 356
                 +  +Y+FG+V  E++ G  P             +  +I+++ +  LSP +++  
Sbjct: 199 SNPYSFQSDVYAFGIVLYELMTGQLP-------YSNINNRDQIIEMVGRGSLSPDLSKVR 251
Query: 357 IQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                 +  +   CL+ K   RP+  RI  E+E
Sbjct: 252 SNCPKRMKRLMAECLKKKRDERPSFPRILAEIE 284

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV   + +  + EYME GSL   LR  D    +   + + +++ +A  + YL        
Sbjct: 112 VVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV--IQLVGMLRGIASGMKYL---SDMGY 166
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVD-SSNRTLQAGT--YGYIALELVYTMVVT 302
           VHRD               V+DFG  R+L+ D  +  T + G     + + E +     T
Sbjct: 167 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFT 226
Query: 303 EKCVIYSFGVVALEVL-MGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDII 361
               ++S+G+V  EV+  G  P              I  +D  Y RL PP++        
Sbjct: 227 SASDVWSYGIVLWEVMSYGERPYWEMSNQDV-----IKAVDEGY-RLPPPMDCPAA---- 276
Query: 362 LVSTIALACLRSKPKSRPTMQRI 384
            +  + L C +    +RP  ++I
Sbjct: 277 -LYQLMLDCWQKDRNNRPKFEQI 298

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV   + +  + EYME GSL   LR  D    +   + + +++ +A  + YL        
Sbjct: 85  VVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV--IQLVGMLRGIASGMKYLSD---MGY 139
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVD-SSNRTLQAGT--YGYIALELVYTMVVT 302
           VHRD               V+DFG  R+L+ D  +  T + G     + + E +     T
Sbjct: 140 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFT 199
Query: 303 EKCVIYSFGVVALEVL-MGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDII 361
               ++S+G+V  EV+  G  P              I  +D  Y RL PP++        
Sbjct: 200 SASDVWSYGIVLWEVMSYGERP-----YWEMSNQDVIKAVDEGY-RLPPPMDCP-----A 248
Query: 362 LVSTIALACLRSKPKSRPTMQRI 384
            +  + L C +    +RP  ++I
Sbjct: 249 ALYQLMLDCWQKDRNNRPKFEQI 271

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 84/220 (38%), Gaps = 39/220 (17%)
Query: 138 LIDATEYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKL--------------------- 175
           L D    F +   +G G Y  VYK   +  G++ A+K +                     
Sbjct: 19  LRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYS 78
Query: 176 HHSE--TEDSAFVVYSPQCM----FFIYEYMERGSLFCVLRD-DDEAIELNWTRRMNIVK 228
           HH    T   AF+  +P  M    + + E+   GS+  ++++     ++  W     I +
Sbjct: 79  HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWI--AYICR 136
Query: 229 SVAHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY 288
            +   LS+LH      ++HRD            E  + DFG    LD     R    GT 
Sbjct: 137 EILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTP 193
Query: 289 GYIALELVYTMVVTE-----KCVIYSFGVVALEVLMGTHP 323
            ++A E++      +     K  ++S G+ A+E+  G  P
Sbjct: 194 YWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPP 233

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV   + +  + EYME GSL   LR  D    +   + + +++ +A  + YL        
Sbjct: 114 VVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV--IQLVGMLRGIASGMKYL---SDMGY 168
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVD-SSNRTLQAGT--YGYIALELVYTMVVT 302
           VHRD               V+DFG  R+L+ D  +  T + G     + + E +     T
Sbjct: 169 VHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFT 228
Query: 303 EKCVIYSFGVVALEVL-MGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDII 361
               ++S+G+V  EV+  G  P              I  +D  Y RL PP++        
Sbjct: 229 SASDVWSYGIVLWEVMSYGERPYWEMSNQDV-----IKAVDEGY-RLPPPMDCPAA---- 278
Query: 362 LVSTIALACLRSKPKSRPTMQRI 384
            +  + L C +    +RP  ++I
Sbjct: 279 -LYQLMLDCWQKDRNNRPKFEQI 300

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 20/203 (9%)
Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV   + +  + EYME GSL   LR  D    +   + + +++ +A  + YL        
Sbjct: 102 VVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTV--IQLVGMLRGIASGMKYLSD---MGY 156
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVD-SSNRTLQAGT--YGYIALELVYTMVVT 302
           VHRD               V+DFG  R+L+ D  +  T + G     + + E +     T
Sbjct: 157 VHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFT 216
Query: 303 EKCVIYSFGVVALEVL-MGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDII 361
               ++S+G+V  EV+  G  P              I  +D  Y RL PP++        
Sbjct: 217 SASDVWSYGIVLWEVMSYGERP-----YWEMSNQDVIKAVDEGY-RLPPPMDCP-----A 265
Query: 362 LVSTIALACLRSKPKSRPTMQRI 384
            +  + L C +    +RP  ++I
Sbjct: 266 ALYQLMLDCWQKDRNNRPKFEQI 288

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 46/236 (19%)
Query: 117 AAKNGDVFSVWNYDGKILYENLIDATEYFHIRYCIGTGGYDSVYKAE------------L 164
           A +NG+  S W    +       D  + F  +  +GTG +  V  AE            +
Sbjct: 3   ARENGESSSSWKKQAE-------DIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCI 55
Query: 165 P-----------DGKVVALKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDD 213
           P           + ++  L+K+ H        +  SP  ++ + + +  G LF      D
Sbjct: 56  PKKALKGKESSIENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGGELF------D 109
Query: 214 EAIELNWTRRMN---IVKSVAHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEA---FVAD 267
             +E  +    +   +++ V  A+ YLH      IVHRD            E     ++D
Sbjct: 110 RIVEKGFYTEKDASTLIRQVLDAVYYLHR---MGIVHRDLKPENLLYYSQDEESKIMISD 166
Query: 268 FGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           FG  ++ +      +   GT GY+A E++     ++    +S GV+A  +L G  P
Sbjct: 167 FGLSKM-EGKGDVMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 221

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 85/214 (39%), Gaps = 42/214 (19%)
Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSA 184
            ++  TE   ++  +G+G + +VYK   +P+G+ V    A+K L+ +       E  D A
Sbjct: 33  RILKETELKRVK-VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEA 91
Query: 185 FVVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIE----LNWTRRMNI 226
            ++ S                 +  + + M  G L   + +  + I     LNW  +   
Sbjct: 92  LIMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQ--- 148
Query: 227 VKSVAHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAG 286
              +A  + YL       +VHRD               + DFG  RLL+ D        G
Sbjct: 149 ---IAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGG 202
Query: 287 TY--GYIALELVYTMVVTEKCVIYSFGVVALEVL 318
                ++ALE ++    T +  ++S+GV   E++
Sbjct: 203 KMPIKWMALECIHYRKFTHQSDVWSYGVTIWELM 236

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 6/135 (4%)
Query: 189 SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHR 248
           + + +FF+ EY+  G L   ++      + + +R       +   L +LH   +  IV+R
Sbjct: 89  TKENLFFVMEYLNGGDLMYHIQ---SCHKFDLSRATFYAAEIILGLQFLH---SKGIVYR 142
Query: 249 DXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIY 308
           D               +ADFG  +   +  +      GT  YIA E++           +
Sbjct: 143 DLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNXFCGTPDYIAPEILLGQKYNHSVDWW 202
Query: 309 SFGVVALEVLMGTHP 323
           SFGV+  E+L+G  P
Sbjct: 203 SFGVLLYEMLIGQSP 217

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 111/286 (38%), Gaps = 60/286 (20%)
Query: 138 LIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVV----ALKKLHHS-------ETEDSAF 185
           ++  TE   ++  +G+G + +VYK   +P+G+ V    A+K L+ +       E  D A 
Sbjct: 11  ILKETELKRVK-VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEAL 69
Query: 186 VVYS--------------PQCMFFIYEYMERGSLFCVLRDDDEAIE----LNWTRRMNIV 227
           ++ S                 +  + + M  G L   + +  + I     LNW  +    
Sbjct: 70  IMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQ---- 125
Query: 228 KSVAHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGT 287
             +A  + YL       +VHRD               + DFG  RLL+ D        G 
Sbjct: 126 --IAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGK 180
Query: 288 Y--GYIALELVYTMVVTEKCVIYSFGVVALEVL-MGTHPGEXXXXXXXXXGPKIMLIDIL 344
               ++ALE ++    T +  ++S+GV   E++  G  P +          P   + D+L
Sbjct: 181 MPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGI--------PTREIPDLL 232
Query: 345 Y--QRL-SPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE 387
              +RL  PPI        I V  + + C      SRP  + ++ E
Sbjct: 233 EKGERLPQPPIC------TIDVYMVMVKCWMIDADSRPKFKELAAE 272

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 9/142 (6%)
Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV   +    + EYME GSL   LR  D    +   + + +++ V   + YL        
Sbjct: 118 VVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTI--MQLVGMLRGVGAGMRYL---SDLGY 172
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAG---TYGYIALELVYTMVVT 302
           VHRD               V+DFG  R+L+ D        G      + A E +     +
Sbjct: 173 VHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAXTTTGGKIPIRWTAPEAIAFRTFS 232
Query: 303 EKCVIYSFGVVALEVLM-GTHP 323
               ++SFGVV  EVL  G  P
Sbjct: 233 SASDVWSFGVVMWEVLAYGERP 254

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 95/234 (40%), Gaps = 29/234 (12%)
Query: 93  LAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYDGKILYENLIDATEYFHIRYCIG 152
           L    F FI +L   S    ++ R  + GD+++V     K+L +++I             
Sbjct: 20  LGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAV-----KVLKKDVILQ----------- 63
Query: 153 TGGYDSVYKAELPDGKVVALKKLHHSETEDSAFVVY-SPQCMFFIYEYMERGSLFCVLRD 211
               D   +  + + ++++L + H   T+   F  + +P  +FF+ E++  G L   ++ 
Sbjct: 64  ----DDDVECTMTEKRILSLARNHPFLTQ--LFCCFQTPDRLFFVMEFVNGGDLMFHIQ- 116
Query: 212 DDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDXXXXXXXXXXXXEAFVADFGTV 271
             ++   +  R       +  AL +LH      I++RD               +ADFG  
Sbjct: 117 --KSRRFDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMC 171
Query: 272 RLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGE 325
           +    +        GT  YIA E++  M+       ++ GV+  E+L G  P E
Sbjct: 172 KEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFE 225

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 81/207 (39%), Gaps = 29/207 (14%)
Query: 196 IYEYMERGSLFCVLR-------DDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHR 248
           I EY   G L   LR       D ++   L     ++    VA  +++L    + + +HR
Sbjct: 120 ITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDLLHFSSQVAQGMAFL---ASKNCIHR 176
Query: 249 DXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGT---YGYIALELVYTMVVTEKC 305
           D             A + DFG  R + ++ SN  ++        ++A E ++  V T + 
Sbjct: 177 DVAARNVLLTNGHVAKIGDFGLARDI-MNDSNYIVKGNARLPVKWMAPESIFDCVYTVQS 235
Query: 306 VIYSFGVVALEVL---MGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDIIL 362
            ++S+G++  E+    +  +PG               L+   YQ   P    K I  I+ 
Sbjct: 236 DVWSYGILLWEIFSLGLNPYPGILVNSKFYK------LVKDGYQMAQPAFAPKNIYSIMQ 289
Query: 363 VSTIALACLRSKPKSRPTMQRISQELE 389
                 AC   +P  RPT Q+I   L+
Sbjct: 290 ------ACWALEPTHRPTFQQICSFLQ 310

>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase Domain From Human Length = 314

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 19/141 (13%)
Query: 193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC--------TPS 244
           ++ I  + ++GSL   L+ +     + W    ++ ++++  LSYLH D          PS
Sbjct: 88  LWLITAFHDKGSLTDYLKGNI----ITWNELCHVAETMSRGLSYLHEDVPWCRGEGHKPS 143
Query: 245 IVHRDXXXXXXXXXXXXEAFVADFG-TVRLLDVDSSNRTL-QAGTYGYIALELVYTMVVT 302
           I HRD             A +ADFG  VR         T  Q GT  Y+A E++   +  
Sbjct: 144 IAHRDFKSKNVLLKSDLTAVLADFGLAVRFEPGKPPGDTHGQVGTRRYMAPEVLEGAINF 203
Query: 303 EKCV-----IYSFGVVALEVL 318
           ++       +Y+ G+V  E++
Sbjct: 204 QRDAFLRIDMYAMGLVLWELV 224

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 81/207 (39%), Gaps = 29/207 (14%)
Query: 196 IYEYMERGSLFCVLR-------DDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHR 248
           I EY   G L   LR       D ++   L     ++    VA  +++L    + + +HR
Sbjct: 128 ITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDLLHFSSQVAQGMAFL---ASKNCIHR 184
Query: 249 DXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTY---GYIALELVYTMVVTEKC 305
           D             A + DFG  R + ++ SN  ++        ++A E ++  V T + 
Sbjct: 185 DVAARNVLLTNGHVAKIGDFGLARDI-MNDSNYIVKGNARLPVKWMAPESIFDCVYTVQS 243
Query: 306 VIYSFGVVALEVL---MGTHPGEXXXXXXXXXGPKIMLIDILYQRLSPPINQKIIQDIIL 362
            ++S+G++  E+    +  +PG               L+   YQ   P    K I  I+ 
Sbjct: 244 DVWSYGILLWEIFSLGLNPYPG------ILVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQ 297
Query: 363 VSTIALACLRSKPKSRPTMQRISQELE 389
                 AC   +P  RPT Q+I   L+
Sbjct: 298 ------ACWALEPTHRPTFQQICSFLQ 318

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 6/135 (4%)
Query: 189 SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHR 248
           + + +FF+ EY+  G L   ++      + + +R       +   L +LH   +  IV+R
Sbjct: 90  TKENLFFVMEYLNGGDLMYHIQ---SCHKFDLSRATFYAAEIILGLQFLH---SKGIVYR 143
Query: 249 DXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIY 308
           D               +ADFG  +   +  +      GT  YIA E++           +
Sbjct: 144 DLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNEFCGTPDYIAPEILLGQKYNHSVDWW 203
Query: 309 SFGVVALEVLMGTHP 323
           SFGV+  E+L+G  P
Sbjct: 204 SFGVLLYEMLIGQSP 218

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 9/142 (6%)
Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           VV   +    + EYME GSL   LR  D    +   + + +++ V   + YL        
Sbjct: 118 VVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTI--MQLVGMLRGVGAGMRYL---SDLGY 172
Query: 246 VHRDXXXXXXXXXXXXEAFVADFGTVRLLDVDSSNRTLQAG---TYGYIALELVYTMVVT 302
           VHRD               V+DFG  R+L+ D        G      + A E +     +
Sbjct: 173 VHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFS 232
Query: 303 EKCVIYSFGVVALEVLM-GTHP 323
               ++SFGVV  EVL  G  P
Sbjct: 233 SASDVWSFGVVMWEVLAYGERP 254

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	412
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-63
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	8e-52
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	2e-51
3soc_A	322	Activin receptor type-2A; structural genomics cons	4e-50
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	1e-46
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-44
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-41
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-39
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-39
3q4u_A	301	Activin receptor type-1; structural genomics conso	7e-39
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	8e-39
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	5e-38
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	7e-37
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	3e-36
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-35
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	5e-33
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	4e-31
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-30
2a19_B	284	Interferon-induced, double-stranded RNA-activated	3e-24
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-23
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-23
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	5e-23
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	2e-22
3an0_A	340	Dual specificity mitogen-activated protein kinase;	2e-21
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	6e-21
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	6e-21
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-20
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	1e-20
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-20
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	2e-20
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	3e-20
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	4e-20
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	5e-20
2dyl_A	318	Dual specificity mitogen-activated protein kinase	5e-20
3fme_A	290	Dual specificity mitogen-activated protein kinase;	1e-19
3aln_A	327	Dual specificity mitogen-activated protein kinase;	1e-19
3ork_A	311	Serine/threonine protein kinase; structural genomi	4e-19
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	5e-19
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	8e-19
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-18
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-18
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-18
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	3e-18
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	6e-18
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	7e-18
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	8e-18
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	8e-18
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	9e-18
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	9e-18
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-17
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-17
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	2e-17
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	4e-17
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	6e-17
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	7e-17
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	7e-17
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	7e-17
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	8e-17
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	1e-16
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-16
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-16
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	3e-16
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	6e-16
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	6e-16
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	7e-16
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	1e-15
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	3e-15
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	4e-15
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	5e-15
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	5e-15
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	5e-15
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	6e-15
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	7e-15
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	7e-15
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	1e-14
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	1e-14
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	1e-14
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	1e-14
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	2e-14
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	2e-14
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-14
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	2e-14
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	2e-14
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	3e-14
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	3e-14
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	3e-14
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	3e-14
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	4e-14
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	4e-14
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	6e-14
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	6e-14
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	8e-14
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	8e-14
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	9e-14
3pls_A	298	Macrophage-stimulating protein receptor; protein k	1e-13
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	3e-13
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	6e-13
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	6e-13
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	7e-13
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	2e-12
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-12
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	3e-12
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	3e-12
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	6e-12
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	8e-12
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-11
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-11
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	2e-11
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	3e-11
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	3e-11
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	4e-11
3uqc_A	286	Probable conserved transmembrane protein; structur	6e-11
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	9e-11
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	9e-11
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	9e-11
3niz_A	311	Rhodanese family protein; structural genomics, str	9e-11
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	1e-10
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-10
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	2e-10
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	2e-10
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-10
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	2e-10
4aoj_A	329	High affinity nerve growth factor receptor; transf	2e-10
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	3e-10
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	3e-10
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	3e-10
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	3e-10
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	4e-10
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	4e-10
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	4e-10
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	4e-10
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	5e-10
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	5e-10
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	8e-10
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	8e-10
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	9e-10
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	1e-09
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	1e-09
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	2e-09
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-09
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	3e-09
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	3e-09
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	4e-09
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	5e-09
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	5e-09
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	1e-08
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-08
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-08
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-08
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	1e-08
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-08
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	2e-08
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	2e-08
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	2e-08
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	2e-08
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	3e-08
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	3e-08
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	3e-08
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	4e-08
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	4e-08
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	6e-08
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	6e-08
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	6e-08
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	9e-08
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	1e-07
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	1e-07
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	1e-07
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	1e-07
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	2e-07
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	2e-07
3bhy_A	283	Death-associated protein kinase 3; death associate	2e-07
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-07
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	2e-07
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	2e-07
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	3e-07
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	3e-07
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	4e-07
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	6e-07
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	7e-07
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	9e-07
3rp9_A	458	Mitogen-activated protein kinase; structural genom	1e-06
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	2e-06
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	2e-06
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	3e-06
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	3e-06
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	3e-06
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	4e-06
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	4e-06
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	6e-06
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	7e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-06
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	9e-06
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	1e-05
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	2e-05
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	2e-05
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	2e-05
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	2e-05
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	2e-05
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	2e-05
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	3e-05
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	4e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-05
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	4e-05
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	6e-05
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	7e-05
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	1e-04
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	1e-04
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	1e-04
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	1e-04
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	2e-04
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	2e-04
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	2e-04
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	3e-04
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	4e-04
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	4e-04
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	4e-04
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	5e-04
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	6e-04
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	8e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  206 bits (526), Expect = 1e-63
 Identities = 91/315 (28%), Positives = 140/315 (44%), Gaps = 50/315 (15%)

Query: 135 YENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSET--EDSAFVV----- 187
              L  A++ F  +  +G GG+  VYK  L DG +VA+K+L    T   +  F       
Sbjct: 22  LRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMI 81

Query: 188 -------------YSPQCM-----FFIYEYMERGSL-FCVLRDDDEAIELNWTRRMNIVK 228
                        +   CM       +Y YM  GS+  C+    +    L+W +R  I  
Sbjct: 82  SMAVHRNLLRLRGF---CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIAL 138

Query: 229 SVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-RTLQAGT 287
             A  L+YLH  C P I+HRD+ + NILL+   EA V DFG  +L+D   ++  T   GT
Sbjct: 139 GSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGT 198

Query: 288 YGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLID---IL 344
            G+IA E + T   +EK  ++ +GV+ LE++ G    +L    +      +ML+D    L
Sbjct: 199 IGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDD---DVMLLDWVKGL 255

Query: 345 YQ----------RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM 394
            +           L      + ++ +I V   AL C +S P  RP M  + + LEG    
Sbjct: 256 LKEKKLEALVDVDLQGNYKDEEVEQLIQV---ALLCTQSSPMERPKMSEVVRMLEGDGLA 312

Query: 395 KKGLKEISIPEMRNQ 409
           ++  +E    EM  Q
Sbjct: 313 ER-WEEWQKEEMFRQ 326

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  175 bits (445), Expect = 8e-52
 Identities = 78/304 (25%), Positives = 119/304 (39%), Gaps = 61/304 (20%)

Query: 135 YENLIDATEYFHIRYC------IGTGGYDSVYKAELPDGKVVALKKLHHSETEDSA---- 184
           +  L + T  F  R        +G GG+  VYK  + +   VA+KKL       +     
Sbjct: 17  FYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQ 75

Query: 185 -FVV--------------------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRR 223
            F                           +  +Y YM  GSL   L   D    L+W  R
Sbjct: 76  QFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMR 135

Query: 224 MNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS----S 279
             I +  A+ +++LH +     +HRDI S NILL+    A ++DFG  R  +  +    +
Sbjct: 136 CKIAQGAANGINFLHENH---HIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMT 192

Query: 280 NRTLQAGTYGYIALELVY-TMVVTEKCVIYSFGVVALEVLMG------THPGELLLS--- 329
           +R    GT  Y+A E       +T K  IYSFGVV LE++ G          +LLL    
Sbjct: 193 SRI--VGTTAYMAPE--ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKE 248

Query: 330 -LSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
            +          ID         +N      +  + ++A  CL  K   RP ++++ Q L
Sbjct: 249 EIEDEEKTIEDYID-------KKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL 301

Query: 389 EGKT 392
           +  T
Sbjct: 302 QEMT 305

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  174 bits (443), Expect = 2e-51
 Identities = 84/304 (27%), Positives = 119/304 (39%), Gaps = 58/304 (19%)

Query: 135 YENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHS----ETEDSAFVV--- 187
             +L +AT  F  ++ IG G +  VYK  L DG  VALK+          E   F     
Sbjct: 31  LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEE---FETEIE 87

Query: 188 ---------------YSPQC-----MFFIYEYMERGSLFCVLRDDDEAIE-LNWTRRMNI 226
                          +   C     M  IY+YME G+L   L   D     ++W +R+ I
Sbjct: 88  TLSFCRHPHLVSLIGF---CDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEI 144

Query: 227 VKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR--TLQ 284
               A  L YLH   T +I+HRD+ S NILL+ N    + DFG  +           T+ 
Sbjct: 145 CIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVV 201

Query: 285 AGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGP-------- 336
            GT GYI  E      +TEK  +YSFGVV  EVL         +  S             
Sbjct: 202 KGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSA----IVQSLPREMVNLAEWAV 257

Query: 337 ----KIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT 392
                  L  I+   L+  I  +    +      A+ CL    + RP+M  +  +LE   
Sbjct: 258 ESHNNGQLEQIVDPNLADKIRPE---SLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYAL 314

Query: 393 PMKK 396
            +++
Sbjct: 315 RLQE 318

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  171 bits (434), Expect = 4e-50
 Identities = 58/304 (19%), Positives = 112/304 (36%), Gaps = 54/304 (17%)

Query: 135 YENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF--------- 185
            ENL   +    +      G +  V+KA+    + VA+K     + +             
Sbjct: 16  TENLYFQSMPLQLLEVKARGRFGCVWKAQ-LLNEYVAVKIFPIQDKQSWQNEYEVYSLPG 74

Query: 186 -----VV----------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
                ++               ++ I  + E+GSL   L+ +     ++W    +I +++
Sbjct: 75  MKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN----VVSWNELCHIAETM 130

Query: 231 AHALSYLHHD-------CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS--NR 281
           A  L+YLH D         P+I HRDI S N+LL +NL A +ADFG     +   S  + 
Sbjct: 131 ARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDT 190

Query: 282 TLQAGTYGYIALE-----LVYTMVVTEKCVIYSFGVVALEVLMGTHPG-------ELLLS 329
             Q GT  Y+A E     + +      +  +Y+ G+V  E+               L   
Sbjct: 191 HGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFE 250

Query: 330 LSSSSGPKI--MLIDILYQRLSPPINQKIIQDIIL--VSTIALACLRSKPKSRPTMQRIS 385
                 P +  M   +++++  P +     +   +  +      C     ++R +   + 
Sbjct: 251 EEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVG 310

Query: 386 QELE 389
           + + 
Sbjct: 311 ERIT 314

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  161 bits (409), Expect = 1e-46
 Identities = 64/275 (23%), Positives = 120/275 (43%), Gaps = 38/275 (13%)

Query: 136 ENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF---------- 185
            ++ID  E   +   +G G +  V KA+    K VA+K++  SE+E  AF          
Sbjct: 2   LHMIDYKE-IEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIE-SESERKAFIVELRQLSRV 58

Query: 186 ----------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALS 235
                        +P C+  + EY E GSL+ VL   +          M+     +  ++
Sbjct: 59  NHPNIVKLYGACLNPVCL--VMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVA 116

Query: 236 YLHHDCTPSIVHRDISSNNILLNSNLEAF-VADFGTVRLLDVDSSNRTLQAGTYGYIALE 294
           YLH     +++HRD+   N+LL +      + DFGT   +    ++ T   G+  ++A E
Sbjct: 117 YLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDI---QTHMTNNKGSAAWMAPE 173

Query: 295 LVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ 354
           +      +EKC ++S+G++  EV+    P + +       GP   ++  ++    PP+ +
Sbjct: 174 VFEGSNYSEKCDVFSWGIILWEVITRRKPFDEI------GGPAFRIMWAVHNGTRPPLIK 227

Query: 355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            + + I    ++   C    P  RP+M+ I + + 
Sbjct: 228 NLPKPI---ESLMTRCWSKDPSQRPSMEEIVKIMT 259

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  155 bits (395), Expect = 1e-44
 Identities = 67/274 (24%), Positives = 116/274 (42%), Gaps = 36/274 (13%)

Query: 139 IDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF------------- 185
           I   +  +I+  IG G + +V++AE   G  VA+K L   +                   
Sbjct: 34  IPWCD-LNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRL 91

Query: 186 ----------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALS 235
                      V  P  +  + EY+ RGSL+ +L       +L+  RR+++   VA  ++
Sbjct: 92  RHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMN 151

Query: 236 YLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALEL 295
           YLH+   P IVHR++ S N+L++      V DFG  RL      +    AGT  ++A E+
Sbjct: 152 YLHN-RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEV 210

Query: 296 VYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK 355
           +      EK  +YSFGV+  E+     P   L      +  +++   + ++     I + 
Sbjct: 211 LRDEPSNEKSDVYSFGVILWELATLQQPWGNL------NPAQVVA-AVGFKCKRLEIPRN 263

Query: 356 IIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           +   +   + I   C  ++P  RP+   I   L 
Sbjct: 264 LNPQV---AAIIEGCWTNEPWKRPSFATIMDLLR 294

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  147 bits (372), Expect = 2e-41
 Identities = 68/287 (23%), Positives = 111/287 (38%), Gaps = 53/287 (18%)

Query: 139 IDATEYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSAF------------ 185
           +   E       IG GG+  V+K   + D  VVA+K L   ++E                
Sbjct: 16  LADNE-IEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREV 74

Query: 186 ----------------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS 229
                           ++++P  M  + E++  G L+  L D  +A  + W+ ++ ++  
Sbjct: 75  FIMSNLNHPNIVKLYGLMHNPPRM--VMEFVPCGDLYHRLLD--KAHPIKWSVKLRLMLD 130

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF-----VADFGTVRLLDVDSSNRTLQ 284
           +A  + Y+ +   P IVHRD+ S NI L S  E       VADFG  +         +  
Sbjct: 131 IALGIEYMQN-QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSV---SGL 186

Query: 285 AGTYGYIALELVYT--MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLID 342
            G + ++A E +       TEK   YSF ++   +L G  P +       S G    +  
Sbjct: 187 LGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEY-----SYGKIKFINM 241

Query: 343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           I  + L P I +     +     +   C    PK RP    I +EL 
Sbjct: 242 IREEGLRPTIPEDCPPRL---RNVIELCWSGDPKKRPHFSYIVKELS 285

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  143 bits (362), Expect = 2e-39
 Identities = 59/328 (17%), Positives = 110/328 (33%), Gaps = 65/328 (19%)

Query: 135 YENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHS-------ETE------ 181
                   +   +   IG G Y +VYK  L D + VA+K    +       E        
Sbjct: 5   ASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNFINEKNIYRVPL 63

Query: 182 ------------DSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS 229
                       D             + EY   GSL   L         +W     +  S
Sbjct: 64  MEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLH----TSDWVSSCRLAHS 119

Query: 230 VAHALSYLHHD------CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR-- 281
           V   L+YLH +        P+I HRD++S N+L+ ++    ++DFG    L  +   R  
Sbjct: 120 VTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPG 179

Query: 282 ------TLQAGTYGYIA-------LELVYTMVVTEKCVIYSFGVVALEVLMGT------- 321
                   + GT  Y+A       + L       ++  +Y+ G++  E+ M         
Sbjct: 180 EEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGE 239

Query: 322 --HPGELLLSLSSSSGPKI--MLIDILYQRLSPPINQKIIQDIILVSTIA---LACLRSK 374
                ++       + P    M + +  ++  P   +   ++ + V ++      C    
Sbjct: 240 SVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQD 299

Query: 375 PKSRPTMQRISQELEGKTPMKKGLKEIS 402
            ++R T Q   + +     + +  K +S
Sbjct: 300 AEARLTAQXAEERMAELMMIWERNKSVS 327

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  140 bits (356), Expect = 2e-39
 Identities = 64/284 (22%), Positives = 109/284 (38%), Gaps = 51/284 (17%)

Query: 139 IDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF------------- 185
           ID  E   +   IG GG+  VY+A    G  VA+K   H   ED +              
Sbjct: 4   IDFAE-LTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFA 61

Query: 186 ------------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHA 233
                       V      +  + E+   G L  VL        +     +N    +A  
Sbjct: 62  MLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGK----RIPPDILVNWAVQIARG 117

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAF--------VADFGTVRLLDVDSSNRTLQA 285
           ++YLH +    I+HRD+ S+NIL+   +E          + DFG  R      + +   A
Sbjct: 118 MNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLARE--WHRTTKMSAA 175

Query: 286 GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY 345
           G Y ++A E++   + ++   ++S+GV+  E+L G  P   +  L+       +   +  
Sbjct: 176 GAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLA-------VAYGVAM 228

Query: 346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            +L+ PI     +     + +   C    P SRP+   I  +L 
Sbjct: 229 NKLALPIPSTCPEPF---AKLMEDCWNPDPHSRPSFTNILDQLT 269

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  140 bits (355), Expect = 7e-39
 Identities = 66/291 (22%), Positives = 111/291 (38%), Gaps = 58/291 (19%)

Query: 150 CIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV----VYS---------------- 189
           C+G G Y  V++     G+ VA+K    S  ++ ++     +Y+                
Sbjct: 15  CVGKGRYGEVWRGSW-QGENVAVKIF--SSRDEKSWFRETELYNTVMLRHENILGFIASD 71

Query: 190 ------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHD--- 240
                    ++ I  Y E GSL+  L+       L+    + IV S+A  L++LH +   
Sbjct: 72  MTSRHSSTQLWLITHYHEMGSLYDYLQLT----TLDTVSCLRIVLSIASGLAHLHIEIFG 127

Query: 241 --CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS----NRTLQAGTYGYIALE 294
               P+I HRD+ S NIL+  N +  +AD G   +    ++        + GT  Y+A E
Sbjct: 128 TQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPE 187

Query: 295 L------VYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS------SSSGPKI--ML 340
           +      V      ++  I++FG+V  EV        ++            + P    M 
Sbjct: 188 VLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMR 247

Query: 341 IDILYQRLSPPINQKIIQDIILVSTIAL--ACLRSKPKSRPTMQRISQELE 389
             +   +  P I  +   D  L S   L   C    P +R T  RI + L 
Sbjct: 248 KVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLT 298

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  141 bits (357), Expect = 8e-39
 Identities = 66/308 (21%), Positives = 107/308 (34%), Gaps = 55/308 (17%)

Query: 131 GKILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF----- 185
           G  L      A +   +   IG G Y  V+  +   G+ VA+K    +E           
Sbjct: 26  GLPLLVQRTIAKQ-IQMVKQIGKGRYGEVWMGKW-RGEKVAVKVFFTTEEASWFRETEIY 83

Query: 186 ---------VV----------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNI 226
                    ++           S   ++ I +Y E GSL+  L+       L+    + +
Sbjct: 84  QTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKST----TLDAKSMLKL 139

Query: 227 VKSVAHALSYLH-----HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR 281
             S    L +LH         P+I HRD+ S NIL+  N    +AD G       D++  
Sbjct: 140 AYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEV 199

Query: 282 TL----QAGTYGYIALELVYTMV------VTEKCVIYSFGVVALEVLMGTHPGELLLSLS 331
            +    + GT  Y+  E++   +            +YSFG++  EV      G ++    
Sbjct: 200 DIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQ 259

Query: 332 ------SSSGPKI--MLIDILYQRLSPPINQKIIQDIILVSTIAL--ACLRSKPKSRPTM 381
                   S P    M   +  ++L P    +   D  L     L   C    P SR T 
Sbjct: 260 LPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTA 319

Query: 382 QRISQELE 389
            R+ + L 
Sbjct: 320 LRVKKTLA 327

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  136 bits (344), Expect = 7e-37
 Identities = 63/290 (21%), Positives = 106/290 (36%), Gaps = 56/290 (19%)

Query: 150 CIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV---VY------------------ 188
            IG G +  V++ +   G+ VA+K    S  E S F    +Y                  
Sbjct: 49  SIGKGRFGEVWRGKW-RGEEVAVKIFS-SREERSWFREAEIYQTVMLRHENILGFIAADN 106

Query: 189 ----SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHD---- 240
               +   ++ + +Y E GSLF  L        +     + +  S A  L++LH +    
Sbjct: 107 KDNGTWTQLWLVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGT 162

Query: 241 -CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTL----QAGTYGYIALEL 295
              P+I HRD+ S NIL+  N    +AD G     D  +    +    + GT  Y+A E+
Sbjct: 163 QGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEV 222

Query: 296 ------VYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLS--------LSSSSGPKIMLI 341
                 +      ++  IY+ G+V  E+      G +           + S    + M  
Sbjct: 223 LDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRK 282

Query: 342 DILYQRLSPPINQKIIQDIILVSTIAL--ACLRSKPKSRPTMQRISQELE 389
            +  Q+L P I  +      L     +   C  +   +R T  RI + L 
Sbjct: 283 VVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLS 332

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  133 bits (337), Expect = 3e-36
 Identities = 62/277 (22%), Positives = 114/277 (41%), Gaps = 54/277 (19%)

Query: 151 IGTGGYDSVYKAEL-PDGKVVALKKLHHSETED-SAF--------------------VVY 188
           +G G +    K      G+V+ +K+L   + E    F                    V+Y
Sbjct: 18  LGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLY 77

Query: 189 SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHR 248
             + + FI EY++ G+L  +++  D   +  W++R++  K +A  ++YLH   + +I+HR
Sbjct: 78  KDKRLNFITEYIKGGTLRGIIKSMDS--QYPWSQRVSFAKDIASGMAYLH---SMNIIHR 132

Query: 249 DISSNNILLNSNLEAFVADFGTVRLLDVDSSN--------------RTLQAGTYGYIALE 294
           D++S+N L+  N    VADFG  RL+  + +               R    G   ++A E
Sbjct: 133 DLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPE 192

Query: 295 LVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN- 353
           ++      EK  ++SFG+V  E++   +     L  +   G   + +         P N 
Sbjct: 193 MINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFG---LNVRGFL-DRYCPPNC 248

Query: 354 -QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                        I + C    P+ RP+  ++   LE
Sbjct: 249 PPSFFP-------ITVRCCDLDPEKRPSFVKLEHWLE 278

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  130 bits (329), Expect = 2e-35
 Identities = 43/279 (15%), Positives = 90/279 (32%), Gaps = 47/279 (16%)

Query: 139 IDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF------------- 185
           ID  +  +    +       ++K     G  + +K L   +                   
Sbjct: 7   IDFKQ-LNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIF 64

Query: 186 ----------VVYSPQC--MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHA 233
                        SP       I  +M  GSL+ VL +      ++ ++ +     +A  
Sbjct: 65  SHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEG-TNFVVDQSQAVKFALDMARG 123

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIAL 293
           +++LH    P I    ++S +++++ ++ A ++           S     +     ++A 
Sbjct: 124 MAFLHT-LEPLIPRHALNSRSVMIDEDMTARISMADVKF-----SFQSPGRMYAPAWVAP 177

Query: 294 ELV---YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP 350
           E +             ++SF V+  E++    P   L           + + +  + L P
Sbjct: 178 EALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADL-------SNMEIGMKVALEGLRP 230

Query: 351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            I   I   +   S +   C+   P  RP    I   LE
Sbjct: 231 TIPPGISPHV---SKLMKICMNEDPAKRPKFDMIVPILE 266

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  125 bits (316), Expect = 5e-33
 Identities = 60/316 (18%), Positives = 116/316 (36%), Gaps = 69/316 (21%)

Query: 139 IDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF------------- 185
           I   +   I   IG G +  VY      G+V A++ +      +                
Sbjct: 30  IPFEQ-LEIGELIGKGRFGQVYHGRW-HGEV-AIRLIDIERDNEDQLKAFKREVMAYRQT 86

Query: 186 ----------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALS 235
                        SP  +  I    +  +L+ V+RD    I L+  +   I + +   + 
Sbjct: 87  RHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAK--IVLDVNKTRQIAQEIVKGMG 144

Query: 236 YLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR-----TLQAGTYGY 290
           YLH      I+H+D+ S N+  + N +  + DFG   +  V  + R      +Q G   +
Sbjct: 145 YLH---AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCH 200

Query: 291 IALELVYTMVV---------TEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLI 341
           +A E++  +           ++   +++ G +  E+     P +          P   +I
Sbjct: 201 LAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQ--------PAEAII 252

Query: 342 DILYQRLSPPINQ----KIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKG 397
             +   + P ++Q    K I DI+      L C   + + RPT  ++   LE    + K 
Sbjct: 253 WQMGTGMKPNLSQIGMGKEISDIL------LFCWAFEQEERPTFTKLMDMLE---KLPKR 303

Query: 398 LKEISIPE--MRNQEM 411
            + +S P    ++ E+
Sbjct: 304 NRRLSHPGHFWKSAEL 319

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  117 bits (296), Expect = 1e-30
 Identities = 59/279 (21%), Positives = 114/279 (40%), Gaps = 43/279 (15%)

Query: 139 IDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL---HHSETEDSAFV--------- 186
           I   +   +   IG+G + +VYK +   G V A+K L     +  +  AF          
Sbjct: 21  IPDGQ-ITVGQRIGSGSFGTVYKGKW-HGDV-AVKMLNVTAPTPQQLQAFKNEVGVLRKT 77

Query: 187 ----------VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSY 236
                       +   +  + ++ E  SL+  L   +   +    + ++I +  A  + Y
Sbjct: 78  RHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHASET--KFEMKKLIDIARQTARGMDY 135

Query: 237 LHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD--VDSSNRTLQAGTYGYIALE 294
           LH     SI+HRD+ SNNI L+ +    + DFG          S      +G+  ++A E
Sbjct: 136 LH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPE 192

Query: 295 LV---YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP 351
           ++    +   + +  +Y+FG+V  E++ G  P   +         +  +I+++ +    P
Sbjct: 193 VIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNI-------NNRDQIIEMVGRGSLSP 245

Query: 352 INQKIIQDI-ILVSTIALACLRSKPKSRPTMQRISQELE 389
              K+  +    +  +   CL+ K   RP+  RI  E+E
Sbjct: 246 DLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIE 284

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score =  100 bits (251), Expect = 3e-24
 Identities = 54/279 (19%), Positives = 97/279 (34%), Gaps = 65/279 (23%)

Query: 145 FHIRYCIGTGGYDSVYKAE-LPDGKVVALK-----------------KLHH--------- 177
           F     IG+GG+  V+KA+   DGK   +K                 KL H         
Sbjct: 13  FKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGC 72

Query: 178 ------SETEDSAFVVYSPQCMFFIY-EYMERGSLFCVLRDD-----DEAIELNWTRRMN 225
                      S     S     FI  E+ ++G+L   +        D+ + L    ++ 
Sbjct: 73  WDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQI- 131

Query: 226 IVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA 285
                   + Y+H   +  +++RD+  +NI L    +  + DFG V  L  D        
Sbjct: 132 -----TKGVDYIH---SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTR-SK 182

Query: 286 GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY 345
           GT  Y++ E + +    ++  +Y+ G++  E+L                       D+  
Sbjct: 183 GTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKF---------FTDLRD 233

Query: 346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
             +S   ++K  + ++         L  KP+ RP    I
Sbjct: 234 GIISDIFDKK-EKTLL------QKLLSKKPEDRPNTSEI 265

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 99.8 bits (249), Expect = 1e-23
 Identities = 57/300 (19%), Positives = 107/300 (35%), Gaps = 59/300 (19%)

Query: 143 EYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLH------------HSETE-----DSA 184
           E +     IG G +      +   DG+   +K+++              E          
Sbjct: 24  EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHP 83

Query: 185 FVV------YSPQCMFFIYEYMERGSLFCVLRDD-----DEAIELNWTRRMNIVKSVAHA 233
            +V           ++ + +Y E G LF  +         E   L+W  ++        A
Sbjct: 84  NIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQI------CLA 137

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIAL 293
           L ++H      I+HRDI S NI L  +    + DFG  R+L+          GT  Y++ 
Sbjct: 138 LKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSP 194

Query: 294 ELVYTMVVTEKCVIYSFGVVALEVLMGTHP--GELLLSLSSSSGPKIMLIDILYQRLSPP 351
           E+        K  I++ G V  E+    H      + +L      KI+          PP
Sbjct: 195 EICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVL----KIISGSF------PP 244

Query: 352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP-MKKGLKEISIPEMRNQE 410
           ++     D+    ++     +  P+ RP++  I +        + K +++   P++  +E
Sbjct: 245 VSLHYSYDL---RSLVSQLFKRNPRDRPSVNSILE-----KGFIAKRIEKFLSPQLIAEE 296

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 98.6 bits (246), Expect = 1e-23
 Identities = 54/274 (19%), Positives = 91/274 (33%), Gaps = 61/274 (22%)

Query: 144 YFHIRYCIGTGGYDSVYKA-ELPDGKVVA-----------------------LKKLHH-- 177
           +      IG G + +VYK  +      VA                       LK L H  
Sbjct: 27  FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPN 86

Query: 178 ------SETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
                 S            +C+  + E M  G+L   L+       +      +  + + 
Sbjct: 87  IVRFYDSWESTVK----GKKCIVLVTELMTSGTLKTYLKRFKV---MKIKVLRSWCRQIL 139

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNL-EAFVADFGTVRLLDVDSSNRTLQAGTYGY 290
             L +LH   TP I+HRD+  +NI +        + D G   L    S  + +  GT  +
Sbjct: 140 KGLQFLH-TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR-ASFAKAVI-GTPEF 196

Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP 350
           +A E +Y     E   +Y+FG+  LE+    +P        S       +   +   + P
Sbjct: 197 MAPE-MYEEKYDESVDVYAFGMCMLEMATSEYPY-------SECQNAAQIYRRVTSGVKP 248

Query: 351 PINQKII----QDIILVSTIALACLRSKPKSRPT 380
               K+     ++II        C+R     R +
Sbjct: 249 ASFDKVAIPEVKEII------EGCIRQNKDERYS 276

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 97.0 bits (242), Expect = 5e-23
 Identities = 62/279 (22%), Positives = 99/279 (35%), Gaps = 56/279 (20%)

Query: 143 EYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLH-----HSETEDS------------- 183
           E + + Y IGTG Y    K     DGK++  K+L       +E +               
Sbjct: 6   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 65

Query: 184 -------AFVVYSPQCMFFIYEYMERGSLFCVLRDD-------DEAIELNWTRRMNIVKS 229
                    +  +   ++ + EY E G L  V+          DE   L    ++     
Sbjct: 66  NIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQL----- 120

Query: 230 VAHALSYLH--HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGT 287
              AL   H   D   +++HRD+   N+ L+      + DFG  R+L+ D+S      GT
Sbjct: 121 -TLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGT 179

Query: 288 YGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP--GELLLSLSSSSGPKIMLIDILY 345
             Y++ E +  M   EK  I+S G +  E+     P        L+     KI       
Sbjct: 180 PYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAG----KIREGKF-- 233

Query: 346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
                 I  +   +  L   I    L  K   RP+++ I
Sbjct: 234 ----RRIPYRYSDE--LNEIIT-RMLNLKDYHRPSVEEI 265

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 95.5 bits (238), Expect = 2e-22
 Identities = 59/312 (18%), Positives = 113/312 (36%), Gaps = 71/312 (22%)

Query: 142 TEYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKK----------------------LHHS 178
           T++  I+ C+G GG+  V++A+   D    A+K+                      L H 
Sbjct: 5   TDFEPIQ-CLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHP 63

Query: 179 ---------ETEDSAFVVYSPQCMFFIY---EYMERGSLFCVLRDDDEAIELNWTRRMNI 226
                      +++   +       ++Y   +   + +L   +       E   +  ++I
Sbjct: 64  GIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHI 123

Query: 227 VKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS-------- 278
              +A A+ +LH   +  ++HRD+  +NI    +    V DFG V  +D D         
Sbjct: 124 FLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTP 180

Query: 279 ----SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSS 334
               +  T Q GT  Y++ E ++    + K  I+S G++           ELL   S+  
Sbjct: 181 MPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILF---------ELLYPFSTQM 231

Query: 335 GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQ-------E 387
                L D+   +  PP+  +          +    L   P  RP    I +       +
Sbjct: 232 ERVRTLTDVRNLKF-PPLFTQKYPCE---YVMVQDMLSPSPMERPEAINIIENAVFEDLD 287

Query: 388 LEGKTPMKKGLK 399
             GKT +++  +
Sbjct: 288 FPGKTVLRQRSR 299

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 92.6 bits (230), Expect = 6e-21
 Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 36/207 (17%)

Query: 143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHHSETE----------------DSAF 185
           + F     +G G    V+K    P G V+A K +H                     +S +
Sbjct: 33  DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPY 92

Query: 186 VV------YSPQCMFFIYEYMERGSLFCVLRDD---DEAIELNWTRRMNIVKSVAHALSY 236
           +V      YS   +    E+M+ GSL  VL+      E I         +  +V   L+Y
Sbjct: 93  IVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQI------LGKVSIAVIKGLTY 146

Query: 237 LHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELV 296
           L       I+HRD+  +NIL+NS  E  + DFG    L +DS   +   GT  Y++ E +
Sbjct: 147 LREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQL-IDSMANSF-VGTRSYMSPERL 202

Query: 297 YTMVVTEKCVIYSFGVVALEVLMGTHP 323
                + +  I+S G+  +E+ +G +P
Sbjct: 203 QGTHYSVQSDIWSMGLSLVEMAVGRYP 229

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 91.6 bits (228), Expect = 6e-21
 Identities = 54/280 (19%), Positives = 85/280 (30%), Gaps = 72/280 (25%)

Query: 143 EYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLH------------------HSETEDS 183
           + F     +G G Y  V+K     DG++ A+K+                    H +    
Sbjct: 57  QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQH 116

Query: 184 AFVV------YSPQCMFFIYEYMERGSLFCVLRDD----DEAIELNWTRRMNIVKSVAHA 233
              V           ++   E     SL            EA    + R          A
Sbjct: 117 PCCVRLEQAWEEGGILYLQTELCG-PSLQQHCEAWGASLPEAQVWGYLR------DTLLA 169

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIAL 293
           L++LH      +VH D+   NI L       + DFG +  L    +    Q G   Y+A 
Sbjct: 170 LAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEV-QEGDPRYMAP 225

Query: 294 ELV---YTMVVTEKCVIYSFGVVALEVLMGTHP---GELLLSLSSSSGPKIMLIDILYQR 347
           EL+   Y         ++S G+  LEV         GE    L                 
Sbjct: 226 ELLQGSY----GTAADVFSLGLTILEVACNMELPHGGEGWQQLRQG-------------Y 268

Query: 348 LSPPINQKI---IQDIILVSTIALACLRSKPKSRPTMQRI 384
           L P     +   ++ ++      +  L   PK R T + +
Sbjct: 269 LPPEFTAGLSSELRSVL------VMMLEPDPKLRATAEAL 302

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 90.4 bits (225), Expect = 1e-20
 Identities = 51/278 (18%), Positives = 93/278 (33%), Gaps = 57/278 (20%)

Query: 145 FHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSA------------------F 185
           F I   IG G +  VY+A  L DG  VALKK+   +  D+                    
Sbjct: 34  FRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPN 93

Query: 186 VV------YSPQCMFFIYEYMERGSLFCVLRDD-------DEAIELNWTRRMNIVKSVAH 232
           V+           +  + E  + G L  +++          E     +  ++        
Sbjct: 94  VIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQL------CS 147

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIA 292
           AL ++H      ++HRDI   N+ + +     + D G  R     ++      GT  Y++
Sbjct: 148 ALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMS 204

Query: 293 LELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI 352
            E ++      K  I+S G +  E+     P                L   + Q   PP+
Sbjct: 205 PERIHENGYNFKSDIWSLGCLLYEMAALQSP------FYGDKMNLYSLCKKIEQCDYPPL 258

Query: 353 NQKI----IQDIILVSTIALACLRSKPKSRPTMQRISQ 386
                   ++ ++        C+   P+ RP +  +  
Sbjct: 259 PSDHYSEELRQLV------NMCINPDPEKRPDVTYVYD 290

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 90.5 bits (225), Expect = 1e-20
 Identities = 69/273 (25%), Positives = 107/273 (39%), Gaps = 59/273 (21%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETED---------------- 182
           D  E F     IG G +  V+K  +    KVVA+K +   E ED                
Sbjct: 19  DPEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCD 78

Query: 183 SAFVV------YSPQCMFFIYEYMERGSLFCVLRD---DDEAIELNWTRRMNIVKSVAHA 233
           S +V            ++ I EY+  GS   +L     D+  I         I++ +   
Sbjct: 79  SPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIAT-------ILREILKG 131

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIAL 293
           L YLH +     +HRDI + N+LL+ + E  +ADFG    L      R    GT  ++A 
Sbjct: 132 LDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAP 188

Query: 294 ELVYTMVVTEKCVIYSFGVVALEVLMGT------HPGELLLSLSSSSGPKIMLIDILYQR 347
           E++       K  I+S G+ A+E+  G       HP ++L  +  ++ P       L   
Sbjct: 189 EVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPT------LEGN 242

Query: 348 LSPPINQKIIQDIILVSTIALACLRSKPKSRPT 380
            S P+ + +             CL  +P  RPT
Sbjct: 243 YSKPLKEFVEA-----------CLNKEPSFRPT 264

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 90.1 bits (224), Expect = 2e-20
 Identities = 59/296 (19%), Positives = 107/296 (36%), Gaps = 78/296 (26%)

Query: 145 FHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETE--------------DSAFVV-- 187
           F     +G G +  V KA    D +  A+KK+ H+E +              +  +VV  
Sbjct: 8   FEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRY 67

Query: 188 -----------------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
                                 +F   EY E G+L+ ++  ++   + +   R  + + +
Sbjct: 68  YAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWR--LFRQI 125

Query: 231 AHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD--------------V 276
             ALSY+H      I+HRD+   NI ++ +    + DFG  + +                
Sbjct: 126 LEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPG 182

Query: 277 DSSNRTLQAGTYGYIALELV-----YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS 331
            S N T   GT  Y+A E++     Y     EK  +YS G++  E++     G   +++ 
Sbjct: 183 SSDNLTSAIGTAMYVATEVLDGTGHY----NEKIDMYSLGIIFFEMIYPFSTGMERVNIL 238

Query: 332 SSSGPKIMLIDILYQRLSPPINQKI---IQDIILVSTIALACLRSKPKSRPTMQRI 384
                K+  + I      P  +       + II         +   P  RP  + +
Sbjct: 239 K----KLRSVSI---EFPPDFDDNKMKVEKKII------RLLIDHDPNKRPGARTL 281

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 90.1 bits (224), Expect = 2e-20
 Identities = 49/295 (16%), Positives = 98/295 (33%), Gaps = 69/295 (23%)

Query: 143 EYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETE-------------------- 181
           +++     +G GG+  V   E L DG   ALK++   E +                    
Sbjct: 29  KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNI 88

Query: 182 ----DSAFVVYSPQCMFFIY-EYMERGSLFCVLR---------DDDEAIELNWTRRMNIV 227
                        +   ++   + +RG+L+  +           +D+         + ++
Sbjct: 89  LRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQI--------LWLL 140

Query: 228 KSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT----- 282
             +   L  +H        HRD+   NILL    +  + D G++    +           
Sbjct: 141 LGICRGLEAIHA---KGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTL 197

Query: 283 ----LQAGTYGYIALELVYT---MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSG 335
                Q  T  Y A EL       V+ E+  ++S G V   ++ G  P +          
Sbjct: 198 QDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYD------MVFQ 251

Query: 336 PKIMLIDILYQRLSPPINQKIIQDII-LVSTIALACLRSKPKSRPTMQRISQELE 389
               +   +  +LS P + +    +  L++    + +   P  RP +  +  +LE
Sbjct: 252 KGDSVALAVQNQLSIPQSPRHSSALWQLLN----SMMTVDPHQRPHIPLLLSQLE 302

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 90.5 bits (224), Expect = 3e-20
 Identities = 27/294 (9%), Positives = 61/294 (20%), Gaps = 73/294 (24%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFV----------------------- 186
           +  G    V+   ++   +  ALK          + +                       
Sbjct: 70  LRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARD 129

Query: 187 ---------------------------VYSPQCMFFIYEYMERGSLFCVLRDDDEAIE-- 217
                                       Y+      +        L  +    D      
Sbjct: 130 RRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFR 188

Query: 218 --LNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD 275
                     +   +    + L       +VH   + +N+ +  +    + D   +    
Sbjct: 189 GDEGILALHILTAQLIRLAANLQSK---GLVHGHFTPDNLFIMPDGRLMLGDVSALW--- 242

Query: 276 VDSSNRTLQAGTYGYIALELVY--TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSS 333
              +     +    Y   E +   T   T     +  G+    V     P  L+      
Sbjct: 243 KVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKG 302

Query: 334 SGPKIMLIDILYQRLSPPINQKI---IQDIILVSTIALACLRSKPKSRPTMQRI 384
           S  +  L       L+      +   ++ +I         L    + R      
Sbjct: 303 SWKRPSLRVPGTDSLAFGSCTPLPDFVKTLI------GRFLNFDRRRRLLPLEA 350

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 88.8 bits (221), Expect = 4e-20
 Identities = 62/270 (22%), Positives = 96/270 (35%), Gaps = 59/270 (21%)

Query: 148 RY----CIGTGGYDSVYKAELPD---GKVVALKKLHHSETEDSAFV-------------- 186
           RY     +G GG  +VY AE  D      VA+K +     E    +              
Sbjct: 12  RYKIVDKLGGGGMSTVYLAE--DTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLS 69

Query: 187 ------VY----SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSY 236
                 +        C + + EY+E  +L   +        L+    +N    +   + +
Sbjct: 70  HQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGP---LSVDTAINFTNQILDGIKH 126

Query: 237 LHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA-GTYGYIALEL 295
            H      IVHRDI   NIL++SN    + DFG  + L   S  +T    GT  Y + E 
Sbjct: 127 AHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQ 183

Query: 296 VYTMVVTEKCVIYSFGVVALEVLMGTHP--GELLLSLSSSSGPKIMLIDILYQRLS---P 350
                  E   IYS G+V  E+L+G  P  GE               + I  + +    P
Sbjct: 184 AKGEATDECTDIYSIGIVLYEMLVGEPPFNGE---------TA----VSIAIKHIQDSVP 230

Query: 351 PINQKIIQDI-ILVSTIALACLRSKPKSRP 379
            +   + +DI   +S + L        +R 
Sbjct: 231 NVTTDVRKDIPQSLSNVILRATEKDKANRY 260

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 88.8 bits (221), Expect = 5e-20
 Identities = 48/207 (23%), Positives = 79/207 (38%), Gaps = 36/207 (17%)

Query: 145 FHIRYCIGTGGYDSVYKAELPD---GKVVALKKLHHSETEDSAFV--------------- 186
           + +R  +G GG   VY+AE  D    ++VALK +  + + D  F                
Sbjct: 36  YRLRRLVGRGGMGDVYEAE--DTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQE 93

Query: 187 -----VY---SPQCMFFIY-EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL 237
                ++         ++    +    L  +LR       L   R + IV+ +  AL   
Sbjct: 94  PHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRRQGP---LAPPRAVAIVRQIGSALDAA 150

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA-GTYGYIALELV 296
           H        HRD+   NIL++++  A++ DFG       +   +     GT  Y+A E  
Sbjct: 151 HAA---GATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERF 207

Query: 297 YTMVVTEKCVIYSFGVVALEVLMGTHP 323
                T +  IY+   V  E L G+ P
Sbjct: 208 SESHATYRADIYALTCVLYECLTGSPP 234

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 89.0 bits (221), Expect = 5e-20
 Identities = 52/263 (19%), Positives = 93/263 (35%), Gaps = 51/263 (19%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETE-----------------DSAFVV----- 187
           +G+G    V+K      G V+A+K++  S  +                 D  ++V     
Sbjct: 33  MGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGT 92

Query: 188 -YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIV 246
             +   +F   E M   +     R     I      +  +  ++  AL YL       ++
Sbjct: 93  FITNTDVFIAMELMGTCAEKLKKRMQG-PIPERILGK--MTVAIVKALYYLKEK--HGVI 147

Query: 247 HRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTE--- 303
           HRD+  +NILL+   +  + DFG    L VD   +   AG   Y+A E +     T+   
Sbjct: 148 HRDVKPSNILLDERGQIKLCDFGISGRL-VDDKAKDRSAGCAAYMAPERIDPPDPTKPDY 206

Query: 304 --KCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ---RLSPPIN-QKII 357
             +  ++S G+  +E+  G  P        +      +L  +L +    L   +      
Sbjct: 207 DIRADVWSLGISLVELATGQFP------YKNCKTDFEVLTKVLQEEPPLLPGHMGFSGDF 260

Query: 358 QDIILVSTIALACLRSKPKSRPT 380
           Q  +        CL    + RP 
Sbjct: 261 QSFV------KDCLTKDHRKRPK 277

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 87.7 bits (218), Expect = 1e-19
 Identities = 58/267 (21%), Positives = 102/267 (38%), Gaps = 58/267 (21%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETE-----------------DSAFVV----- 187
           +G G Y  V K   +P G+++A+K++  +                    D  F V     
Sbjct: 15  LGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGA 74

Query: 188 -YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMN------IVKSVAHALSYLHHD 240
            +    ++   E M+  SL     D      ++  + +       I  S+  AL +LH  
Sbjct: 75  LFREGDVWICMELMD-TSL-----DKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSK 128

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMV 300
              S++HRD+  +N+L+N+  +  + DFG    L VD   + + AG   Y+A E +   +
Sbjct: 129 L--SVIHRDVKPSNVLINALGQVKMCDFGISGYL-VDDVAKDIDAGCKPYMAPERINPEL 185

Query: 301 V----TEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ---RLSPPIN 353
                + K  I+S G+  +E+ +   P        S   P   L  ++ +   +L     
Sbjct: 186 NQKGYSVKSDIWSLGITMIELAILRFP------YDSWGTPFQQLKQVVEEPSPQLPADKF 239

Query: 354 QKIIQDIILVSTIALACLRSKPKSRPT 380
                D          CL+   K RPT
Sbjct: 240 SAEFVDFT------SQCLKKNSKERPT 260

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 87.8 bits (218), Expect = 1e-19
 Identities = 58/283 (20%), Positives = 97/283 (34%), Gaps = 63/283 (22%)

Query: 139 IDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETE---------------- 181
             A +   +   IG G Y SV K    P G+++A+K++  +  E                
Sbjct: 19  FTAEDLKDLG-EIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRS 77

Query: 182 -DSAFVV------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMN------IVK 228
            D  ++V      +     +   E M   S     +     +       +       I  
Sbjct: 78  SDCPYIVQFYGALFREGDCWICMELMS-TSFDKFYKY----VYSVLDDVIPEEILGKITL 132

Query: 229 SVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY 288
           +   AL++L  +    I+HRDI  +NILL+ +    + DFG    L VDS  +T  AG  
Sbjct: 133 ATVKALNHLKENL--KIIHRDIKPSNILLDRSGNIKLCDFGISGQL-VDSIAKTRDAGCR 189

Query: 289 GYIALELVYTMVV----TEKCVIYSFGVVALEVLMGTHP-------GELLLSLSSSSGPK 337
            Y+A E +           +  ++S G+   E+  G  P        + L  +     P+
Sbjct: 190 PYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQ 249

Query: 338 IMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPT 380
             L +   +  SP     +             CL      RP 
Sbjct: 250 --LSNSEEREFSPSFINFVNL-----------CLTKDESKRPK 279

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 86.1 bits (214), Expect = 4e-19
 Identities = 59/275 (21%), Positives = 103/275 (37%), Gaps = 64/275 (23%)

Query: 148 RY----CIGTGGYDSVYKAELPD---GKVVALKKLHHSETEDSAFV-------------- 186
           RY     +G GG   V+ A   D    + VA+K L      D +F               
Sbjct: 13  RYELGEILGFGGMSEVHLAR--DLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 70

Query: 187 ------VY--------SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH 232
                 VY        +    + + EY++  +L  ++  +     +   R + ++     
Sbjct: 71  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVIADACQ 127

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA---GTYG 289
           AL++ H +    I+HRD+   NI++++     V DFG  R +    ++ T  A   GT  
Sbjct: 128 ALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQ 184

Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP--GELLLSLSSSSGPKIMLIDILYQR 347
           Y++ E      V  +  +YS G V  EVL G  P  G+          P    + + YQ 
Sbjct: 185 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD---------SP----VSVAYQH 231

Query: 348 LS--PPINQKIIQDI-ILVSTIALACLRSKPKSRP 379
           +   P       + +   +  + L  L   P++R 
Sbjct: 232 VREDPIPPSARHEGLSADLDAVVLKALAKNPENRY 266

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 87.0 bits (215), Expect = 5e-19
 Identities = 28/225 (12%), Positives = 67/225 (29%), Gaps = 47/225 (20%)

Query: 142 TEYFHIRYCIGTGGYDSVYKAE------LPDGKVVALKKL-------------------- 175
           ++  ++ + +G G +  VY+A         + +   LK                      
Sbjct: 64  SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKP 123

Query: 176 --HHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIE--LNWTRRMNIVKSVA 231
              H   +  +  ++       + E    G+L   +       E  +     ++    + 
Sbjct: 124 SMQHMFMKFYSAHLF-QNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRML 182

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAF-----------VADFGTVRLLDVDSSN 280
           + +  +H      I+H DI  +N +L +                + D G    + +    
Sbjct: 183 YMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKG 239

Query: 281 RTLQA--GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
               A   T G+  +E++       +   +        +L GT+ 
Sbjct: 240 TIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYM 284

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 86.8 bits (215), Expect = 8e-19
 Identities = 59/280 (21%), Positives = 108/280 (38%), Gaps = 68/280 (24%)

Query: 145 FHIRYCIGTGGYDSVYKAELPDGKVVALK---------------------------KLHH 177
           F  +  +G G   ++    + D + VA+K                           +   
Sbjct: 26  FCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFC 85

Query: 178 SETEDSAFVVYSPQCMFFIYEYMERGSLF-CVLRDDDEAIELNWTRRMNIVKSVAHALSY 236
           +E +D  F        +   E     +L   V + D   + L     + +++     L++
Sbjct: 86  TE-KDRQFQ-------YIAIELCA-ATLQEYVEQKDFAHLGL---EPITLLQQTTSGLAH 133

Query: 237 LHHDCTPSIVHRDISSNNILL-----NSNLEAFVADFGTVRLLDVDSS---NRTLQAGTY 288
           LH     +IVHRD+  +NIL+     +  ++A ++DFG  + L V       R+   GT 
Sbjct: 134 LHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTE 190

Query: 289 GYIALELV---YTMVVTEKCVIYSFGVVALEVL-MGTHP-GELLLSLSSSSGPKIMLIDI 343
           G+IA E++        T    I+S G V   V+  G+HP G+     S      I+L   
Sbjct: 191 GWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGK-----SLQRQANILLGAC 245

Query: 344 LYQRLSPPINQKII-QDIILVSTIALACLRSKPKSRPTMQ 382
               L P  ++ +I +++I         +   P+ RP+ +
Sbjct: 246 SLDCLHPEKHEDVIARELI------EKMIAMDPQKRPSAK 279

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 56/287 (19%), Positives = 108/287 (37%), Gaps = 69/287 (24%)

Query: 143 EYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK--KLHHSETE--------------DSAF 185
           + + ++  IG+G    V  A   P  + VA+K   L   +T                   
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN 74

Query: 186 VV------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMN------IVKSVAHA 233
           +V           ++ + + +  GS+  +++      E   +  ++      I++ V   
Sbjct: 75  IVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHK-SGVLDESTIATILREVLEG 133

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG-----TVRLLDVDSSNRTLQAGTY 288
           L YLH +     +HRD+ + NILL  +    +ADFG             +  R    GT 
Sbjct: 134 LEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTP 190

Query: 289 GYIALELVYTMVVTE------KCVIYSFGVVALEVLMGT------HPGELLLSLSSSSGP 336
            ++A E     V+ +      K  I+SFG+ A+E+  G        P ++L+    +  P
Sbjct: 191 CWMAPE-----VMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPP 245

Query: 337 KI---MLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPT 380
            +   +    + ++      +       ++S     CL+  P+ RPT
Sbjct: 246 SLETGVQDKEMLKKYGKSFRK-------MIS----LCLQKDPEKRPT 281

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 84.8 bits (210), Expect = 2e-18
 Identities = 53/278 (19%), Positives = 89/278 (32%), Gaps = 66/278 (23%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVA----------------LKKLHH----- 177
           +   +   +  +G G +  V++  +   G   A                   L       
Sbjct: 55  EEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVP 114

Query: 178 ---SETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDD---DEAIELNWTRRMNIVKSVA 231
              +  E     ++    M    E +E GSL  +++      E   L +           
Sbjct: 115 LYGAVREGPWVNIF----M----ELLEGGSLGQLIKQMGCLPEDRALYYLG------QAL 160

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSN-LEAFVADFGTVRLLDVDSSNRTLQA----- 285
             L YLH      I+H D+ ++N+LL+S+   A + DFG    L  D   ++L       
Sbjct: 161 EGLEYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIP 217

Query: 286 GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY 345
           GT  ++A E+V       K  I+S   + L +L G HP       +      + L     
Sbjct: 218 GTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHP------WTQYFRGPLCLKIASE 271

Query: 346 QRLSPPINQKI---IQDIILVSTIALACLRSKPKSRPT 380
                 I           I         LR +P  R +
Sbjct: 272 PPPIREIPPSCAPLTAQAI------QEGLRKEPVHRAS 303

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 86.7 bits (214), Expect = 2e-18
 Identities = 59/296 (19%), Positives = 99/296 (33%), Gaps = 50/296 (16%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVA----------------------LKKLHHS------ETE 181
           +GTGG+  V +      G+ VA                      +KKL+H       E  
Sbjct: 22  LGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVP 81

Query: 182 DSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC 241
           D    +          EY E G L   L   +    L       ++  ++ AL YLH + 
Sbjct: 82  DGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN- 140

Query: 242 TPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              I+HRD+   NI+L    +     + D G  + LD          GT  Y+A EL+  
Sbjct: 141 --RIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEF-VGTLQYLAPELLEQ 197

Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN--QKI 356
              T     +SFG +A E + G  P          +   +     + ++ +  I     +
Sbjct: 198 KKYTVTVDYWSFGTLAFECITGFRPFL-------PNWQPVQWHGKVREKSNEHIVVYDDL 250

Query: 357 IQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPEMRNQEMF 412
              +   S +      S   +    + +   L      ++G    + P+  N   F
Sbjct: 251 TGAVKFSSVLPTPNHLSGILAGKLERWLQCMLM-WHQRQRG----TDPQNPNVGCF 301

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 83.9 bits (208), Expect = 3e-18
 Identities = 62/272 (22%), Positives = 98/272 (36%), Gaps = 65/272 (23%)

Query: 148 RYCIGTGGYDSVYKA-ELPDGKVVA---------------------LKKLHH-------- 177
           R  +G G Y  VY   +L +   +A                      K L H        
Sbjct: 27  RVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLG 86

Query: 178 SETEDSAFVVYSPQCMFFIY-EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSY 236
           S +E+             I+ E +  GSL  +LR     ++ N        K +   L Y
Sbjct: 87  SFSENG---------FIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKY 137

Query: 237 LHHDCTPSIVHRDISSNNILLNS-NLEAFVADFGT-VRLLDVDSSNRTLQAGTYGYIALE 294
           LH +    IVHRDI  +N+L+N+ +    ++DFGT  RL  ++    T   GT  Y+A E
Sbjct: 138 LHDNQ---IVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFT-GTLQYMAPE 193

Query: 295 LVYTMVV--TEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI 352
           ++        +   I+S G   +E+  G  P            P+  +  +   ++ P I
Sbjct: 194 IIDKGPRGYGKAADIWSLGCTIIEMATGKPP------FYELGEPQAAMFKVGMFKVHPEI 247

Query: 353 NQKIIQDIILVSTIA----LACLRSKPKSRPT 380
            + +       S  A    L C    P  R  
Sbjct: 248 PESM-------SAEAKAFILKCFEPDPDKRAC 272

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 83.2 bits (206), Expect = 6e-18
 Identities = 63/292 (21%), Positives = 102/292 (34%), Gaps = 71/292 (24%)

Query: 136 ENLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDS----------- 183
             L D    F +   +G G Y  VYK   +  G++ A+K +  +  E+            
Sbjct: 17  SALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKK 76

Query: 184 ------------AFVVYSPQC----MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMN-- 225
                       AF+  +P      ++ + E+   GS+        + I+      +   
Sbjct: 77  YSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSV-------TDLIKNTKGNTLKEE 129

Query: 226 ----IVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR 281
               I + +   LS+LH      ++HRDI   N+LL  N E  + DFG    LD     R
Sbjct: 130 WIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRR 186

Query: 282 TLQAGTYGYIALELVYTMVVTE-----KCVIYSFGVVALEVLMG------THPGELLLSL 330
               GT  ++A E++      +     K  ++S G+ A+E+  G       HP   L  +
Sbjct: 187 NTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLI 246

Query: 331 SSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQ 382
             +  P          RL      K  Q  I        CL      RP  +
Sbjct: 247 PRNPAP----------RLKSKKWSKKFQSFIES------CLVKNHSQRPATE 282

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 83.0 bits (205), Expect = 7e-18
 Identities = 41/227 (18%), Positives = 78/227 (34%), Gaps = 28/227 (12%)

Query: 172 LKKLHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           +       T            ++   +   + +L   +       +      ++I   +A
Sbjct: 115 MDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIA 174

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS------------ 279
            A+ +LH      ++HRD+  +NI    +    V DFG V  +D D              
Sbjct: 175 EAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYA 231

Query: 280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIM 339
             T Q GT  Y++ E ++    + K  I+S G++  E+L         + +         
Sbjct: 232 THTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRI--------- 282

Query: 340 LIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQ 386
           + D+   +      QK  Q+ ++V       L   P  RP    I +
Sbjct: 283 ITDVRNLKFPLLFTQKYPQEHMMVQ----DMLSPSPTERPEATDIIE 325

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 82.8 bits (205), Expect = 8e-18
 Identities = 65/267 (24%), Positives = 106/267 (39%), Gaps = 46/267 (17%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETE-------------DSAF 185
              E F +   +G G Y SVYKA     G++VA+K++                   DS  
Sbjct: 26  QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPH 85

Query: 186 VV------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH 239
           VV      +    ++ + EY   GS+  ++R  ++ +  +      I++S    L YLH 
Sbjct: 86  VVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIAT--ILQSTLKGLEYLHF 143

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM 299
                 +HRDI + NILLN+   A +ADFG    L    + R    GT  ++A E++  +
Sbjct: 144 M---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI 200

Query: 300 VVTEKCVIYSFGVVALEVLMG------THPGELLLSLSSSSGPKIMLIDILYQRLSPPIN 353
                  I+S G+ A+E+  G       HP   +  + ++  P     +      S    
Sbjct: 201 GYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPE----LWSDNFT 256

Query: 354 QKIIQDIILVSTIALACLRSKPKSRPT 380
             + Q           CL   P+ R T
Sbjct: 257 DFVKQ-----------CLVKSPEQRAT 272

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 82.4 bits (204), Expect = 8e-18
 Identities = 56/275 (20%), Positives = 110/275 (40%), Gaps = 62/275 (22%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETED---------------S 183
           D  + +     IG G   +VY A ++  G+ VA+++++  +                  +
Sbjct: 17  DPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKN 76

Query: 184 AFVV------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMN------IVKSVA 231
             +V           ++ + EY+  GSL  V+              M+      + +   
Sbjct: 77  PNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT----------ETCMDEGQIAAVCRECL 126

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI 291
            AL +LH +    ++HRDI S+NILL  +    + DFG    +  + S R+   GT  ++
Sbjct: 127 QALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWM 183

Query: 292 ALELVYTMVVTEKCVIYSFGVVALEVLMG------THPGELLLSLSSSSGPKIMLIDILY 345
           A E+V       K  I+S G++A+E++ G       +P   L  ++++  P++   +   
Sbjct: 184 APEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPE--- 240

Query: 346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPT 380
            +LS      + +           CL    + R +
Sbjct: 241 -KLSAIFRDFLNR-----------CLEMDVEKRGS 263

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 84.5 bits (209), Expect = 9e-18
 Identities = 46/212 (21%), Positives = 74/212 (34%), Gaps = 53/212 (25%)

Query: 148 RY----CIGTGGYDSVYKAE---LPDGKVVALKKLHHSETEDSAFV-------------- 186
           +Y    CI  GG   +Y A    + +G+ V LK L HS   D+                 
Sbjct: 81  QYEVKGCIAHGGLGWIYLALDRNV-NGRPVVLKGLVHSG--DAEAQAMAMAERQFLAEVV 137

Query: 187 ------VY---------SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
                 ++              + + EY+   SL           +L     +  +  + 
Sbjct: 138 HPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ-----KLPVAEAIAYLLEIL 192

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI 291
            ALSYLH      +V+ D+   NI+L    +  + D G V  +  +S       GT G+ 
Sbjct: 193 PALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVSRI--NSFGYLY--GTPGFQ 244

Query: 292 ALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           A E+V T   T    IY+ G     + +    
Sbjct: 245 APEIVRTG-PTVATDIYTVGRTLAALTLDLPT 275

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 82.4 bits (204), Expect = 9e-18
 Identities = 57/269 (21%), Positives = 107/269 (39%), Gaps = 50/269 (18%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETED---------------S 183
           D          IG G    V  A E   G+ VA+K +   + +                 
Sbjct: 42  DPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQH 101

Query: 184 AFVV------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL 237
             VV         + ++ + E+++ G+L  ++      + LN  +   + ++V  AL+YL
Sbjct: 102 FNVVEMYKSYLVGEELWVLMEFLQGGALTDIVS----QVRLNEEQIATVCEAVLQALAYL 157

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVY 297
           H      ++HRDI S++ILL  +    ++DFG    +  D   R    GT  ++A E++ 
Sbjct: 158 H---AQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVIS 214

Query: 298 TMVVTEKCVIYSFGVVALEVLMG------THPGELLLSLSSSSGPKIMLIDILYQRLSPP 351
             +   +  I+S G++ +E++ G        P + +  L  S  PK+        ++SP 
Sbjct: 215 RSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNSH----KVSPV 270

Query: 352 INQKIIQDIILVSTIALACLRSKPKSRPT 380
           +   + +            L   P+ R T
Sbjct: 271 LRDFLER-----------MLVRDPQERAT 288

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 51/282 (18%), Positives = 88/282 (31%), Gaps = 60/282 (21%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGKV-VALKKLH--HSETEDSAF-------------- 185
           E   +   IG G +  V+   L      VA+K           + F              
Sbjct: 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPN 173

Query: 186 ------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH 239
                 V    Q ++ + E ++ G     LR +     L     + +V   A  + YL  
Sbjct: 174 IVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGA--RLRVKTLLQMVGDAAAGMEYLES 231

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI-----ALE 294
                 +HRD+++ N L+       ++DFG  R            +G    +     A E
Sbjct: 232 K---CCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAA---SGGLRQVPVKWTAPE 285

Query: 295 LVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQ-----RL 348
            +     + +  ++SFG++  E    G  P            P +             RL
Sbjct: 286 ALNYGRYSSESDVWSFGILLWETFSLGASP-----------YPNLSNQQTREFVEKGGRL 334

Query: 349 SPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
             P      +  ++        C   +P  RP+   I QEL+
Sbjct: 335 PCPELCPDAVFRLM------EQCWAYEPGQRPSFSTIYQELQ 370

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 81.2 bits (201), Expect = 2e-17
 Identities = 47/279 (16%), Positives = 96/279 (34%), Gaps = 57/279 (20%)

Query: 145 FHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF------------------- 185
           + I   IG+GG   V++      ++ A+K ++  E ++                      
Sbjct: 30  YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDK 89

Query: 186 ------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH 239
                    + Q ++ + E      L   L+   ++I+    +     K++  A+  +H 
Sbjct: 90  IIRLYDYEITDQYIYMVMECGN-IDLNSWLKKK-KSIDPWERKS--YWKNMLEAVHTIHQ 145

Query: 240 DCTPSIVHRDISSNNILL-NSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELV 296
                IVH D+   N L+ +  L+  + DFG    +  D+++  +  Q GT  Y+  E +
Sbjct: 146 H---GIVHSDLKPANFLIVDGMLK--LIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAI 200

Query: 297 -----------YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY 345
                          ++ K  ++S G +   +  G  P                L  I+ 
Sbjct: 201 KDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTP------FQQIINQISKLHAIID 254

Query: 346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
                       +D  L   +   CL+  PK R ++  +
Sbjct: 255 PNHEIEFPDIPEKD--LQDVL-KCCLKRDPKQRISIPEL 290

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 81.2 bits (201), Expect = 2e-17
 Identities = 53/274 (19%), Positives = 104/274 (37%), Gaps = 53/274 (19%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETED---------------S 183
           D  E + I   +G G +  VYKA     G + A K +     E+                
Sbjct: 16  DPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDH 75

Query: 184 AFVV------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL 237
            ++V      Y    ++ + E+   G++  ++ + D  +     +   + + +  AL++L
Sbjct: 76  PYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQV--VCRQMLEALNFL 133

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVY 297
           H      I+HRD+ + N+L+    +  +ADFG           R    GT  ++A E+V 
Sbjct: 134 HSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVM 190

Query: 298 TMVVTE-----KCVIYSFGVVALEVLMG------THPGELLLSLSSSSGPKIMLIDILYQ 346
              + +     K  I+S G+  +E+          +P  +LL ++ S  P ++       
Sbjct: 191 CETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTPS---- 246

Query: 347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPT 380
           + S      +              L   P++RP+
Sbjct: 247 KWSVEFRDFLKI-----------ALDKNPETRPS 269

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 80.1 bits (198), Expect = 4e-17
 Identities = 51/289 (17%), Positives = 95/289 (32%), Gaps = 73/289 (25%)

Query: 145 FHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLH------------------HSETEDSAF 185
           FH    IG+G + SV+K  +  DG + A+K+                    H+     + 
Sbjct: 13  FHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSH 72

Query: 186 VV--YS----PQCMFFIYEYMERGSLFCVLRDDDEAIE-LNWTRRMNIVKSVAHALSYLH 238
           VV  +S       M    EY   GSL   + ++   +         +++  V   L Y+H
Sbjct: 73  VVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH 132

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAFV-------------------ADFGTVRLLDVDSS 279
                S+VH DI  +NI ++                           D G V  +    S
Sbjct: 133 SM---SLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRI----S 185

Query: 280 NRTLQAGTYGYIALELV-YTMVVTEKCVIYSFGVVALEVLMGTHP---GELLLSLSSSSG 335
           +  ++ G   ++A E++        K  I++  +  +           G+    +     
Sbjct: 186 SPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQWHEIRQGRL 245

Query: 336 PKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
           P+I       Q LS         +++         +   P+ RP+   +
Sbjct: 246 PRI------PQVLSQE-----FTELL------KVMIHPDPERRPSAMAL 277

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 80.5 bits (199), Expect = 6e-17
 Identities = 47/281 (16%), Positives = 96/281 (34%), Gaps = 57/281 (20%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF----------------- 185
             + I   IG+GG   V++      ++ A+K ++  E ++                    
Sbjct: 9   RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHS 68

Query: 186 --------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL 237
                      + Q ++ + E      L   L+   ++I+    +     K++  A+  +
Sbjct: 69  DKIIRLYDYEITDQYIYMVMECGN-IDLNSWLKKK-KSIDPWERKS--YWKNMLEAVHTI 124

Query: 238 HHDCTPSIVHRDISSNNILL-NSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALE 294
           H      IVH D+   N L+ +  L+  + DFG    +  D+++  +  Q GT  Y+  E
Sbjct: 125 HQH---GIVHSDLKPANFLIVDGMLK--LIDFGIANQMQPDTTSVVKDSQVGTVNYMPPE 179

Query: 295 LV-----------YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDI 343
            +               ++ K  ++S G +   +  G  P                L  I
Sbjct: 180 AIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTP------FQQIINQISKLHAI 233

Query: 344 LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
           +             +D  L   +   CL+  PK R ++  +
Sbjct: 234 IDPNHEIEFPDIPEKD--LQDVL-KCCLKRDPKQRISIPEL 271

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 80.2 bits (198), Expect = 7e-17
 Identities = 52/314 (16%), Positives = 102/314 (32%), Gaps = 64/314 (20%)

Query: 145 FHIRYCIGTGGYDSVYKAE-LPDGKVVALKKL--HHSETEDSAF---------------- 185
             +R  +  GG+  VY+A+ +  G+  ALK+L  +  E   +                  
Sbjct: 30  LRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIV 89

Query: 186 -----------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHAL 234
                         + Q  F +   + +G L   L+  +    L+    + I      A+
Sbjct: 90  QFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAV 149

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA--------- 285
            ++H    P I+HRD+   N+LL++     + DFG+   +                    
Sbjct: 150 QHMHR-QKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEI 208

Query: 286 ---GTYGYIALELVYTM---VVTEKCVIYSFGVVALEVLMGTHP--GELLLSLSSSSGPK 337
               T  Y   E++       + EK  I++ G +   +    HP      L + +     
Sbjct: 209 TRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIVNGK--- 265

Query: 338 IMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKG 397
                  Y          +   +I       A L+  P+ R ++  +  +L+     +  
Sbjct: 266 -------YSIPPHDTQYTVFHSLI------RAMLQVNPEERLSIAEVVHQLQEIAAARNV 312

Query: 398 LKEISIPEMRNQEM 411
             +  I E+  Q  
Sbjct: 313 NPKSPITELLEQNG 326

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 81.5 bits (201), Expect = 7e-17
 Identities = 61/273 (22%), Positives = 109/273 (39%), Gaps = 46/273 (16%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV---------------- 186
           E   +   +G G +  V+         VA+K L        AF+                
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ 326

Query: 187 ---VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
              V S + ++ + EYM +GSL   L+ +     L   + +++   +A  ++Y+      
Sbjct: 327 LYAVVSEEPIYIVTEYMSKGSLLDFLKGETGK-YLRLPQLVDMAAQIASGMAYVERM--- 382

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAG-TYGYIALELVYTMVVT 302
           + VHRD+ + NIL+  NL   VADFG  RL++ +       A     + A E       T
Sbjct: 383 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 442

Query: 303 EKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ-----RLSPPIN-QKI 356
            K  ++SFG++  E+           +      P ++  ++L Q     R+  P    + 
Sbjct: 443 IKSDVWSFGILLTEL----------TTKGRVPYPGMVNREVLDQVERGYRMPCPPECPES 492

Query: 357 IQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           + D++        C R +P+ RPT + +   LE
Sbjct: 493 LHDLM------CQCWRKEPEERPTFEYLQAFLE 519

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 81.0 bits (200), Expect = 7e-17
 Identities = 61/273 (22%), Positives = 110/273 (40%), Gaps = 46/273 (16%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV---------------- 186
           E   +   +G G +  V+         VA+K L        AF+                
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ 243

Query: 187 ---VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
              V S + ++ + EYM +GSL   L+ +     L   + +++   +A  ++Y+      
Sbjct: 244 LYAVVSEEPIYIVTEYMSKGSLLDFLKGETGK-YLRLPQLVDMAAQIASGMAYVERM--- 299

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS-SNRTLQAGTYGYIALELVYTMVVT 302
           + VHRD+ + NIL+  NL   VADFG  RL++ +  + R        + A E       T
Sbjct: 300 NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 359

Query: 303 EKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ-----RLSPPIN-QKI 356
            K  ++SFG++  E+           +      P ++  ++L Q     R+  P    + 
Sbjct: 360 IKSDVWSFGILLTEL----------TTKGRVPYPGMVNREVLDQVERGYRMPCPPECPES 409

Query: 357 IQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           + D++        C R +P+ RPT + +   LE
Sbjct: 410 LHDLM------CQCWRKEPEERPTFEYLQAFLE 436

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 80.7 bits (199), Expect = 8e-17
 Identities = 45/295 (15%), Positives = 102/295 (34%), Gaps = 57/295 (19%)

Query: 136 ENLIDATEYFHIRYCIGTG--GYDSVYKA-ELPDGKVVALKK--LHHSETED-------- 182
            + +     + +   IG G     +V  A   P G+ V +++  L     E         
Sbjct: 18  SSFLPEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGEL 77

Query: 183 -------SAFVV------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMN---- 225
                     +V       +   ++ +  +M  GS         + I  ++   MN    
Sbjct: 78  HVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAK-------DLICTHFMDGMNELAI 130

Query: 226 --IVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG-TVRLLDVDSSNRT 282
             I++ V  AL Y+HH      VHR + +++IL++ + + +++     + ++      R 
Sbjct: 131 AYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRV 187

Query: 283 LQAGTYGYI------ALELVYTMVV--TEKCVIYSFGVVALEVLMG------THPGELLL 328
           +       +      + E++   +     K  IYS G+ A E+  G          ++LL
Sbjct: 188 VHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLL 247

Query: 329 SLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQR 383
              + + P ++    +          + + +  L  ++  +  R      P+   
Sbjct: 248 EKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPY 302

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 80.6 bits (199), Expect = 1e-16
 Identities = 57/275 (20%), Positives = 104/275 (37%), Gaps = 48/275 (17%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGKV-VALKKLHHSETEDSAF---------------- 185
               +++ +G G Y  VY+       + VA+K L     E   F                
Sbjct: 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLV 279

Query: 186 ----VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC 241
               V       + I E+M  G+L   LR+ +   E++    + +   ++ A+ YL    
Sbjct: 280 QLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQ-EVSAVVLLYMATQISSAMEYLEKK- 337

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS-SNRTLQAGTYGYIALELVYTMV 300
             + +HR++++ N L+  N    VADFG  RL+  D+ +          + A E +    
Sbjct: 338 --NFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNK 395

Query: 301 VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ-----RLSPPIN-Q 354
            + K  +++FGV+  E+           +   S  P I L  +        R+  P    
Sbjct: 396 FSIKSDVWAFGVLLWEI----------ATYGMSPYPGIDLSQVYELLEKDYRMERPEGCP 445

Query: 355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           + + +++       AC +  P  RP+   I Q  E
Sbjct: 446 EKVYELM------RACWQWNPSDRPSFAEIHQAFE 474

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 80.8 bits (199), Expect = 1e-16
 Identities = 66/397 (16%), Positives = 129/397 (32%), Gaps = 58/397 (14%)

Query: 27  FLKSDMSFNNLDGEIPTYLRDNPPKSFVGNKGLCGHVQGFLSCFQRHRLAPSFILSVKIF 86
            +     F+ L   +  YL+          K  C +     +        P+      + 
Sbjct: 222 CIPEGTKFDTLWQLV-EYLKLKADGLIYCLKEACPNSSASNASGAAAPTLPA--HPSTLT 278

Query: 87  LPLTPILAFTIFGFILLLKGKSENLKLVTRAAKNGDVFSVWNYDGKILYENL-IDATEYF 145
            P   I      G+       +   K            S ++   ++  + L +      
Sbjct: 279 HPQRRIDTLNSDGYTPEPARITSPDKPRPMPMDTSVFESPFSDPEELKDKKLFLKRDNLL 338

Query: 146 HIRYCIGTGGYDSVYKAELPDGKV---VALKKLH--HSETEDSAFV-------------- 186
                +G G + SV +      K    VA+K L     + +    +              
Sbjct: 339 IADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYI 398

Query: 187 -----VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL--HH 239
                V   + +  + E    G L   L    E  E+  +    ++  V+  + YL   +
Sbjct: 399 VRLIGVCQAEALMLVMEMAGGGPLHKFLVGKRE--EIPVSNVAELLHQVSMGMKYLEEKN 456

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI---ALELV 296
                 VHR++++ N+LL +   A ++DFG  + L  D S  T ++     +   A E +
Sbjct: 457 -----FVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECI 511

Query: 297 YTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIM-LIDILYQRLSPPIN- 353
                + +  ++S+GV   E L  G  P + +       GP++M  I+    R+  P   
Sbjct: 512 NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM------KGPEVMAFIEQGK-RMECPPEC 564

Query: 354 -QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
             ++         +   C   K + RP    + Q + 
Sbjct: 565 PPELYA-------LMSDCWIYKWEDRPDFLTVEQRMR 594

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 79.5 bits (196), Expect = 2e-16
 Identities = 46/279 (16%), Positives = 94/279 (33%), Gaps = 57/279 (20%)

Query: 145 FHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF------------------- 185
           + I   IG+GG   V++      ++ A+K ++  E ++                      
Sbjct: 58  YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDK 117

Query: 186 ------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH 239
                    + Q ++ + E      L   L+   ++I+    +     K++  A+  +H 
Sbjct: 118 IIRLYDYEITDQYIYMVMECGN-IDLNSWLKKK-KSIDPWERKS--YWKNMLEAVHTIHQ 173

Query: 240 DCTPSIVHRDISSNNILL-NSNLEAFVADFGTVRLLDVDSSNRTL--QAGTYGYIALELV 296
                IVH D+   N L+ +  L+  + DFG    +  D+++     Q G   Y+  E +
Sbjct: 174 H---GIVHSDLKPANFLIVDGMLK--LIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAI 228

Query: 297 -----------YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY 345
                          ++ K  ++S G +   +  G  P                L  I+ 
Sbjct: 229 KDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTP------FQQIINQISKLHAIID 282

Query: 346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
                       +D  L   +   CL+  PK R ++  +
Sbjct: 283 PNHEIEFPDIPEKD--LQDVL-KCCLKRDPKQRISIPEL 318

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 78.4 bits (194), Expect = 3e-16
 Identities = 54/277 (19%), Positives = 101/277 (36%), Gaps = 63/277 (22%)

Query: 151 IGTGGYDSVYKAEL--PDGKV---VALKKLH--HSETEDSAFV----------------- 186
           +G+G + +VYK        KV   VA+K+L    S   +   +                 
Sbjct: 23  LGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRL 82

Query: 187 --VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL--HHDCT 242
             +     +  I + M  G L   +R+  + I       +N    +A  ++YL       
Sbjct: 83  LGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQ--YLLNWCVQIAKGMNYLEDRR--- 137

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAG------TYGYIALELV 296
             +VHRD+++ N+L+ +     + DFG  +LL  +      + G           ALE +
Sbjct: 138 --LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM----ALESI 191

Query: 297 YTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIM-LIDILYQRLSPPIN- 353
              + T +  ++S+GV   E++  G+ P + +         +I  +++    RL  P   
Sbjct: 192 LHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI------PASEISSILEKGE-RLPQPPIC 244

Query: 354 -QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              +         I   C      SRP  + +  E  
Sbjct: 245 TIDVYM-------IMRKCWMIDADSRPKFRELIIEFS 274

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 77.1 bits (190), Expect = 6e-16
 Identities = 45/222 (20%), Positives = 81/222 (36%), Gaps = 49/222 (22%)

Query: 143 EYFHIRYCIGTGGYDSVYKA-ELPDGKVVA----------------------LKKLHHS- 178
             + +   +G G   +V++      G + A                      LKKL+H  
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 179 -----ETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHA 233
                  E+      + +    I E+   GSL+ VL +   A  L  +  + +++ V   
Sbjct: 69  IVKLFAIEEET----TTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGG 124

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAF----VADFGTVRLLDVDSSNRTLQAGTYG 289
           +++L  +    IVHR+I   NI+     +      + DFG  R L+ D    +L  GT  
Sbjct: 125 MNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSL-YGTEE 180

Query: 290 YIALELVYTMVV--------TEKCVIYSFGVVALEVLMGTHP 323
           Y+  ++    V+             ++S GV       G+ P
Sbjct: 181 YLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLP 222

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 76.5 bits (189), Expect = 6e-16
 Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 43/209 (20%)

Query: 145 FHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSA------------------F 185
           F I   +G G + +VY A E     ++ALK L  ++ E +                    
Sbjct: 11  FEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPN 70

Query: 186 VV------YSPQCMFFIYEYMERGSLFCVLR-----DDDEAIELNWTRRMNIVKSVAHAL 234
           ++      +    ++ I EY   G+++  L+     D+              +  +A+AL
Sbjct: 71  ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRT------AT--YITELANAL 122

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE 294
           SY H      ++HRDI   N+LL S  E  +ADFG        SS RT   GT  Y+  E
Sbjct: 123 SYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVH--APSSRRTDLCGTLDYLPPE 177

Query: 295 LVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           ++   +  EK  ++S GV+  E L+G  P
Sbjct: 178 MIEGRMHDEKVDLWSLGVLCYEFLVGKPP 206

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 76.5 bits (189), Expect = 7e-16
 Identities = 53/284 (18%), Positives = 101/284 (35%), Gaps = 54/284 (19%)

Query: 139 IDATEYFHIRYCIGTGGYDSVYKAEL--PDGKV-VALKKLHHSETEDS--AFV------- 186
           +           +G G + SV +        ++ VA+K L     +      +       
Sbjct: 6   LKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMH 65

Query: 187 ------------VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHAL 234
                       V   + +  + E    G L   L    E  E+  +    ++  V+  +
Sbjct: 66  QLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKRE--EIPVSNVAELLHQVSMGM 123

Query: 235 SYL--HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI- 291
            YL   +      VHRD+++ N+LL +   A ++DFG  + L  D S  T ++     + 
Sbjct: 124 KYLEEKN-----FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLK 178

Query: 292 --ALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIM-LIDILYQR 347
             A E +     + +  ++S+GV   E L  G  P + +       GP++M  I+    R
Sbjct: 179 WYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM------KGPEVMAFIEQGK-R 231

Query: 348 LSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           +  P     ++         +   C   K + RP    + Q + 
Sbjct: 232 MECPPECPPELYA-------LMSDCWIYKWEDRPDFLTVEQRMR 268

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 52/290 (17%), Positives = 100/290 (34%), Gaps = 55/290 (18%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELP-----DGKVVALKKL--HHSETEDSAF---------- 185
            +      +G G +  V            G+ VA+K L         +            
Sbjct: 21  RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL 80

Query: 186 ----------VVYSPQC--MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHA 233
                     +        +  I E++  GSL   L  +    ++N  +++     +   
Sbjct: 81  YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKN--KINLKQQLKYAVQICKG 138

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI-- 291
           + YL    +   VHRD+++ N+L+ S  +  + DFG  + ++ D    T++      +  
Sbjct: 139 MDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFW 195

Query: 292 -ALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGP--KIM----LIDI 343
            A E +          ++SFGV   E+L         +       GP    M    L++ 
Sbjct: 196 YAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNT 255

Query: 344 LYQ--RLSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           L +  RL  P N   ++ Q       +   C   +P +R + Q + +  E
Sbjct: 256 LKEGKRLPCPPNCPDEVYQ-------LMRKCWEFQPSNRTSFQNLIEGFE 298

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 75.1 bits (185), Expect = 3e-15
 Identities = 50/275 (18%), Positives = 99/275 (36%), Gaps = 60/275 (21%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKK--LHHSETED-------------- 182
           D  + F     IG G + +VY A ++ + +VVA+KK      ++ +              
Sbjct: 51  DPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQK 110

Query: 183 --SAFVV------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHAL 234
                 +            + + EY   GS   +L    + ++        +       L
Sbjct: 111 LRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAA--VTHGALQGL 167

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE 294
           +YLH     +++HRD+ + NILL+      + DFG+  ++    +      GT  ++A E
Sbjct: 168 AYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIM----APANSFVGTPYWMAPE 220

Query: 295 LVYTMVVTE---KCVIYSFGVVALEVLMG------THPGELLLSLSSSSGPKIMLIDILY 345
           ++  M   +   K  ++S G+  +E+          +    L  ++ +  P +       
Sbjct: 221 VILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQ-----S 275

Query: 346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPT 380
              S      +             CL+  P+ RPT
Sbjct: 276 GHWSEYFRNFVDS-----------CLQKIPQDRPT 299

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 75.3 bits (185), Expect = 4e-15
 Identities = 45/222 (20%), Positives = 81/222 (36%), Gaps = 49/222 (22%)

Query: 143 EYFHIRYCIGTGGYDSVYKA-ELPDGKVVA----------------------LKKLHHS- 178
             + +   +G G   +V++      G + A                      LKKL+H  
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 179 -----ETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHA 233
                  E+      + +    I E+   GSL+ VL +   A  L  +  + +++ V   
Sbjct: 69  IVKLFAIEEET----TTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGG 124

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAF----VADFGTVRLLDVDSSNRTLQAGTYG 289
           +++L  +    IVHR+I   NI+     +      + DFG  R L+ D    +L  GT  
Sbjct: 125 MNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSL-YGTEE 180

Query: 290 YIALELVYTMVV--------TEKCVIYSFGVVALEVLMGTHP 323
           Y+  ++    V+             ++S GV       G+ P
Sbjct: 181 YLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLP 222

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 74.6 bits (184), Expect = 5e-15
 Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 41/203 (20%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF------------------------ 185
           +G GG+   ++  +    +V A K +  S                               
Sbjct: 49  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 108

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLR-----DDDEAIELNWTRRMNIVKSVAHALSYLHHD 240
                  +F + E   R SL  + +      + EA      R    ++ +     YLH +
Sbjct: 109 FFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEA------RY--YLRQIVLGCQYLHRN 160

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMV 300
               ++HRD+   N+ LN +LE  + DFG    ++ D   + +  GT  YIA E++    
Sbjct: 161 R---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKG 217

Query: 301 VTEKCVIYSFGVVALEVLMGTHP 323
            + +  ++S G +   +L+G  P
Sbjct: 218 HSFEVDVWSIGCIMYTLLVGKPP 240

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 57/276 (20%), Positives = 120/276 (43%), Gaps = 52/276 (18%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV---------------- 186
           E   +   +G G +  V+ A       VA+K +        AF+                
Sbjct: 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVK 247

Query: 187 ---VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
              V + + ++ I E+M +GSL   L+ D+ + +    + ++    +A  ++++      
Sbjct: 248 LHAVVTKEPIYIITEFMAKGSLLDFLKSDEGS-KQPLPKLIDFSAQIAEGMAFIEQR--- 303

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI---ALELVYTMV 300
           + +HRD+ + NIL++++L   +ADFG  R+++ +    T + G    I   A E +    
Sbjct: 304 NYIHRDLRAANILVSASLVCKIADFGLARVIEDNE--YTAREGAKFPIKWTAPEAINFGS 361

Query: 301 VTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQ-----RLSPPIN- 353
            T K  ++SFG++ +E++  G  P            P +   +++       R+  P N 
Sbjct: 362 FTIKSDVWSFGILLMEIVTYGRIP-----------YPGMSNPEVIRALERGYRMPRPENC 410

Query: 354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            + + +I+      + C +++P+ RPT + I   L+
Sbjct: 411 PEELYNIM------MRCWKNRPEERPTFEYIQSVLD 440

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 75.2 bits (185), Expect = 5e-15
 Identities = 53/303 (17%), Positives = 107/303 (35%), Gaps = 67/303 (22%)

Query: 136 ENLIDATEYFHIRYC----IGTGGYDSVYKAELPDGKVVALKKLHHSETEDSA------- 184
            N+ +  +           +G G   +V       G+ VA+K++     + +        
Sbjct: 4   ANIPNFEQSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLT 63

Query: 185 -----------FVVY-SPQCMFFIYEYMERGSLF--CVLRDDDEAIELNWTRR--MNIVK 228
                      +    + + ++   E     +L      ++  +           +++++
Sbjct: 64  ESDDHPNVIRYYCSETTDRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLR 122

Query: 229 SVAHALSYLHHDCTPSIVHRDISSNNILLNS-------------NLEAFVADFGTVRLLD 275
            +A  +++LH      I+HRD+   NIL+++             NL   ++DFG  + LD
Sbjct: 123 QIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLD 179

Query: 276 VDSSNRTLQ----AGTYGYIALEL-------VYTMVVTEKCVIYSFGVVALEVL-MGTHP 323
              S+        +GT G+ A EL            +T    I+S G V   +L  G HP
Sbjct: 180 SGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHP 239

Query: 324 -GELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDII-LVSTIALACLRSKPKSRPTM 381
            G+       S    I+        +    ++ +I +   L+S      +   P  RPT 
Sbjct: 240 FGD-----KYSRESNIIRGIFSLDEMKCLHDRSLIAEATDLIS----QMIDHDPLKRPTA 290

Query: 382 QRI 384
            ++
Sbjct: 291 MKV 293

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 74.3 bits (183), Expect = 6e-15
 Identities = 53/275 (19%), Positives = 102/275 (37%), Gaps = 59/275 (21%)

Query: 151 IGTGGYDSVYKAEL--PDGKV---VALKKLH--HSETEDSAFV----------------- 186
           +G+G + +VYK        KV   VA+K+L    S   +   +                 
Sbjct: 23  LGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRL 82

Query: 187 --VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS 244
             +     +  I + M  G L   +R+  +   +     +N    +A  ++YL       
Sbjct: 83  LGICLTSTVQLITQLMPFGCLLDYVREHKD--NIGSQYLLNWCVQIAKGMNYLEDRR--- 137

Query: 245 IVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAG------TYGYIALELVYT 298
           +VHRD+++ N+L+ +     + DFG  +LL  +      + G           ALE +  
Sbjct: 138 LVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM----ALESILH 193

Query: 299 MVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIM-LIDILYQRLSPPIN--Q 354
            + T +  ++S+GV   E++  G+ P + +         +I  +++    RL  P     
Sbjct: 194 RIYTHQSDVWSYGVTVWELMTFGSKPYDGI------PASEISSILEKGE-RLPQPPICTI 246

Query: 355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            +         I + C      SRP  + +  E  
Sbjct: 247 DVYM-------IMVKCWMIDADSRPKFRELIIEFS 274

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 73.8 bits (182), Expect = 7e-15
 Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 41/203 (20%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF------------------------ 185
           +G GG+   ++  +    +V A K +  S                               
Sbjct: 23  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 82

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLR-----DDDEAIELNWTRRMNIVKSVAHALSYLHHD 240
                  +F + E   R SL  + +      + EA      R    ++ +     YLH +
Sbjct: 83  FFEDNDFVFVVLELCRRRSLLELHKRRKALTEPEA------RY--YLRQIVLGCQYLHRN 134

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMV 300
               ++HRD+   N+ LN +LE  + DFG    ++ D   + +  GT  YIA E++    
Sbjct: 135 R---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKG 191

Query: 301 VTEKCVIYSFGVVALEVLMGTHP 323
            + +  ++S G +   +L+G  P
Sbjct: 192 HSFEVDVWSIGCIMYTLLVGKPP 214

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 74.3 bits (183), Expect = 7e-15
 Identities = 73/308 (23%), Positives = 113/308 (36%), Gaps = 72/308 (23%)

Query: 143 EYFHIRYCIGTGGYDSVYKAEL--PDGK--VVALKKLHHSETEDSA--F----------- 185
               I   +G G +  V    L  P  K   VA+K L    TE     F           
Sbjct: 45  TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFD 104

Query: 186 ---------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSY 236
                    VV   + +  + EYME GSL   LR  D   +    + + +++ +A  + Y
Sbjct: 105 HPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDA--QFTVIQLVGMLRGIASGMKY 162

Query: 237 LHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI---AL 293
           L        VHRD+++ NIL+NSNL   V+DFG  R+L+ D        G    I   + 
Sbjct: 163 LS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSP 219

Query: 294 ELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI 352
           E +     T    ++S+G+V  EV+  G  P                     Y  +S   
Sbjct: 220 EAIAYRKFTSASDVWSYGIVLWEVMSYGERP---------------------YWEMS--- 255

Query: 353 NQKIIQDI-------------ILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKGLK 399
           NQ +I+ +               +  + L C +    +RP  ++I   L+        LK
Sbjct: 256 NQDVIKAVDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNPGSLK 315

Query: 400 EISIPEMR 407
            I+    R
Sbjct: 316 IITSAAAR 323

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 58/290 (20%), Positives = 102/290 (35%), Gaps = 55/290 (18%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELP-----DGKVVALKKLHH-SETEDSAF----------- 185
            +      +G G + SV            G+VVA+KKL H +E     F           
Sbjct: 10  RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQ 69

Query: 186 ---------VVYSPQC--MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHAL 234
                    V YS     +  I EY+  GSL   L+   E I+    + +     +   +
Sbjct: 70  HDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHI--KLLQYTSQICKGM 127

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI--- 291
            YL    T   +HRD+++ NIL+ +     + DFG  ++L  D     ++      I   
Sbjct: 128 EYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWY 184

Query: 292 ALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSG----PKIMLIDILYQ 346
           A E +     +    ++SFGVV  E+                  G     ++++  ++  
Sbjct: 185 APESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIEL 244

Query: 347 -----RLSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                RL  P     +I         I   C  +    RP+ + ++  ++
Sbjct: 245 LKNNGRLPRPDGCPDEIYM-------IMTECWNNNVNQRPSFRDLALRVD 287

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 58/290 (20%), Positives = 102/290 (35%), Gaps = 55/290 (18%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELP-----DGKVVALKKLHH-SETEDSAF----------- 185
            +      +G G + SV            G+VVA+KKL H +E     F           
Sbjct: 41  RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQ 100

Query: 186 ---------VVYSPQC--MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHAL 234
                    V YS     +  I EY+  GSL   L+   E I+    + +     +   +
Sbjct: 101 HDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHI--KLLQYTSQICKGM 158

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI--- 291
            YL    T   +HRD+++ NIL+ +     + DFG  ++L  D     ++      I   
Sbjct: 159 EYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWY 215

Query: 292 ALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSG----PKIMLIDILYQ 346
           A E +     +    ++SFGVV  E+                  G     ++++  ++  
Sbjct: 216 APESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIEL 275

Query: 347 -----RLSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                RL  P     +I         I   C  +    RP+ + ++  ++
Sbjct: 276 LKNNGRLPRPDGCPDEIYM-------IMTECWNNNVNQRPSFRDLALRVD 318

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 61/290 (21%), Positives = 100/290 (34%), Gaps = 73/290 (25%)

Query: 139 IDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF------------- 185
           ID +E       IG+G +  V+     +   VA+K +      +  F             
Sbjct: 5   IDPSE-LTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHP 63

Query: 186 -------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL- 237
                  V      +  + E+ME G L   LR             + +   V   ++YL 
Sbjct: 64  KLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRG--LFAAETLLGMCLDVCEGMAYLE 121

Query: 238 -HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI---AL 293
                   ++HRD+++ N L+  N    V+DFG  R   V     T   GT   +   + 
Sbjct: 122 EAC-----VIHRDLAARNCLVGENQVIKVSDFGMTR--FVLDDQYTSSTGTKFPVKWASP 174

Query: 294 ELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI 352
           E+      + K  ++SFGV+  EV   G  P                     Y+  S   
Sbjct: 175 EVFSFSRYSSKSDVWSFGVLMWEVFSEGKIP---------------------YENRS--- 210

Query: 353 NQKIIQDI-------------ILVSTIALACLRSKPKSRPTMQRISQELE 389
           N ++++DI               V  I   C R +P+ RP   R+ ++L 
Sbjct: 211 NSEVVEDISTGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLA 260

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 60/290 (20%), Positives = 97/290 (33%), Gaps = 73/290 (25%)

Query: 139 IDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF------------- 185
           ID  +       +GTG +  V   +      VA+K +      +  F             
Sbjct: 21  IDPKD-LTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHE 79

Query: 186 -------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL- 237
                  V    + +F I EYM  G L   LR+          + + + K V  A+ YL 
Sbjct: 80  KLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH--RFQTQQLLEMCKDVCEAMEYLE 137

Query: 238 -HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI---AL 293
                    +HRD+++ N L+N      V+DFG  R   V     T   G+   +     
Sbjct: 138 SKQ-----FLHRDLAARNCLVNDQGVVKVSDFGLSR--YVLDDEYTSSVGSKFPVRWSPP 190

Query: 294 ELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI 352
           E++     + K  I++FGV+  E+   G  P                     Y+R +   
Sbjct: 191 EVLMYSKFSSKSDIWAFGVLMWEIYSLGKMP---------------------YERFT--- 226

Query: 353 NQKIIQDII-------------LVSTIALACLRSKPKSRPTMQRISQELE 389
           N +  + I               V TI  +C   K   RPT + +   + 
Sbjct: 227 NSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNIL 276

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 58/281 (20%), Positives = 102/281 (36%), Gaps = 54/281 (19%)

Query: 151 IGTGGYDSVYKAELP-----DGKVVALKKLHHSETE-DSAF------------------- 185
           +G G + SV            G +VA+K+L HS  +    F                   
Sbjct: 31  LGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYR 90

Query: 186 -VVYSPQC--MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCT 242
            V Y P    +  + EY+  G L   L+     ++ +  R +     +   + YL    +
Sbjct: 91  GVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDAS--RLLLYSSQICKGMEYLG---S 145

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI---ALELVYTM 299
              VHRD+++ NIL+ S     +ADFG  +LL +D     ++      I   A E +   
Sbjct: 146 RRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDN 205

Query: 300 VVTEKCVIYSFGVVALEVLM-GTHP---GELLLSLSSSSGPKIMLIDILYQ-----RLSP 350
           + + +  ++SFGVV  E+              L +         L  +L       RL  
Sbjct: 206 IFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPA 265

Query: 351 PIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           P     ++ +       +   C    P+ RP+   +  +L+
Sbjct: 266 PPACPAEVHE-------LMKLCWAPSPQDRPSFSALGPQLD 299

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 72/291 (24%), Positives = 114/291 (39%), Gaps = 73/291 (25%)

Query: 143 EYFHIRYCIGTGGYDSVYKAEL--PDGKV---VALKKLHH--SETEDSAF---------- 185
                +  IG G +  VYK  L    GK    VA+K L    +E +   F          
Sbjct: 44  SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF 103

Query: 186 ----------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALS 235
                     V+   + M  I EYME G+L   LR+ D   E +  + + +++ +A  + 
Sbjct: 104 SHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDG--EFSVLQLVGMLRGIAAGMK 161

Query: 236 YLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI---A 292
           YL +    + VHRD+++ NIL+NSNL   V+DFG  R+L+ D       +G    I   A
Sbjct: 162 YLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTA 218

Query: 293 LELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPP 351
            E +     T    ++SFG+V  EV+  G  P                     Y  LS  
Sbjct: 219 PEAISYRKFTSASDVWSFGIVMWEVMTYGERP---------------------YWELS-- 255

Query: 352 INQKIIQDI-------------ILVSTIALACLRSKPKSRPTMQRISQELE 389
            N ++++ I               +  + + C + +   RP    I   L+
Sbjct: 256 -NHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILD 305

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 73.6 bits (180), Expect = 2e-14
 Identities = 30/297 (10%), Positives = 71/297 (23%), Gaps = 84/297 (28%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSAFV----------------------- 186
           +G     +  +A     G+   +   + +E   S  +                       
Sbjct: 86  LGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAK 145

Query: 187 -------------------------VYSPQCMFFIYEYMER--GSLFCVLRDDDEAIELN 219
                                          +   +    R   +L             +
Sbjct: 146 VHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTH 205

Query: 220 ----WTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD 275
                  R+ +   V   L+ LHH     +VH  +   +I+L+     F+  F  +    
Sbjct: 206 KSLVHHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDG 262

Query: 276 VDSSNRTLQA-GTYGYIALELVY-----TMVVTEKCVIYSFGVVALEVLMGTHP--GELL 327
             + +   +        A  ++        ++T     ++ G+    +     P   +  
Sbjct: 263 ASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAA 322

Query: 328 LSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
           L  S      I         +  P     ++ ++         LR   + R    + 
Sbjct: 323 LGGS----EWIFRSCK---NIPQP-----VRALL------EGFLRYPKEDRLLPLQA 361

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 49/311 (15%), Positives = 102/311 (32%), Gaps = 63/311 (20%)

Query: 128 NYDGKI--LYENLIDATE----YFHIRYCIGTGGYDSVYKAEL-----PDGKVVALKKL- 175
           ++ G +  L++   D T     Y      +G G +  V            G++VA+K L 
Sbjct: 10  HHHGALEVLFQGPGDPTVFHKRYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALK 69

Query: 176 -HHSETEDSAF--------------------VVYSPQC--MFFIYEYMERGSLFCVLRDD 212
                   S +                             +  + EY+  GSL   L   
Sbjct: 70  ADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRH 129

Query: 213 DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR 272
                +   + +   + +   ++YLH       +HRD+++ N+LL+++    + DFG  +
Sbjct: 130 ----SIGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAK 182

Query: 273 LLDVDSSNRTLQAGTYGYI---ALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLL 328
            +        ++      +   A E +          ++SFGV   E+L           
Sbjct: 183 AVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPT 242

Query: 329 SLSSSSG---PKIMLIDILY-----QRLSPPIN--QKIIQDIILVSTIALACLRSKPKSR 378
                 G    ++ ++ +       +RL  P     ++         +   C  ++   R
Sbjct: 243 KFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPAEVYH-------LMKNCWETEASFR 295

Query: 379 PTMQRISQELE 389
           PT + +   L+
Sbjct: 296 PTFENLIPILK 306

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 66/291 (22%), Positives = 101/291 (34%), Gaps = 53/291 (18%)

Query: 138 LIDATEYFHIRYCIGTGGYDSVYKAEL--PDGKV--VALKKLH----HSETEDSAFV--- 186
           LI   +   +   +G G +  V + E   P GK   VA+K L             F+   
Sbjct: 14  LIGEKD-LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREV 72

Query: 187 ----------------VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
                           V     M  + E    GSL   LR       L           V
Sbjct: 73  NAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLG--TLSRYAVQV 130

Query: 231 AHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGT--- 287
           A  + YL        +HRD+++ N+LL +     + DFG +R L  +  +  +Q      
Sbjct: 131 AEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVP 187

Query: 288 YGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIM-LIDILY 345
           + + A E + T   +     + FGV   E+   G  P   L      +G +I+  ID   
Sbjct: 188 FAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL------NGSQILHKIDKEG 241

Query: 346 QRLSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM 394
           +RL  P +  Q I         + + C   KP+ RPT   +   L    P 
Sbjct: 242 ERLPRPEDCPQDIYN-------VMVQCWAHKPEDRPTFVALRDFLLEAQPT 285

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 51/284 (17%), Positives = 99/284 (34%), Gaps = 68/284 (23%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF----------------- 185
           E   +   +G+G +  V   +      VA+K +      +  F                 
Sbjct: 8   EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVK 67

Query: 186 ---VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCT 242
              V      ++ + EY+  G L   LR   +   L  ++ + +   V   +++L     
Sbjct: 68  FYGVCSKEYPIYIVTEYISNGCLLNYLRSHGK--GLEPSQLLEMCYDVCEGMAFLESH-- 123

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI---ALELVYTM 299
              +HRD+++ N L++ +L   V+DFG  R   V         GT   +   A E+ +  
Sbjct: 124 -QFIHRDLAARNCLVDRDLCVKVSDFGMTR--YVLDDQYVSSVGTKFPVKWSAPEVFHYF 180

Query: 300 VVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ 358
             + K  +++FG++  EV   G  P                     Y   +   N +++ 
Sbjct: 181 KYSSKSDVWAFGILMWEVFSLGKMP---------------------YDLYT---NSEVVL 216

Query: 359 DII-------------LVSTIALACLRSKPKSRPTMQRISQELE 389
            +               +  I  +C    P+ RPT Q++   +E
Sbjct: 217 KVSQGHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIE 260

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 57/276 (20%), Positives = 110/276 (39%), Gaps = 52/276 (18%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV---------------- 186
           E   +   +G G +  V+         VA+K L        AF+                
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVR 72

Query: 187 ---VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
              V + + ++ I EYME GSL   L+      +L   + +++   +A  ++++      
Sbjct: 73  LYAVVTQEPIYIITEYMENGSLVDFLKTPSGI-KLTINKLLDMAAQIAEGMAFIEER--- 128

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGT---YGYIALELVYTMV 300
           + +HRD+ + NIL++  L   +ADFG  R   ++ +  T + G      + A E +    
Sbjct: 129 NYIHRDLRAANILVSDTLSCKIADFGLAR--LIEDNEYTAREGAKFPIKWTAPEAINYGT 186

Query: 301 VTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQ-----RLSPPIN- 353
            T K  ++SFG++  E++  G  P            P +   +++       R+  P N 
Sbjct: 187 FTIKSDVWSFGILLTEIVTHGRIP-----------YPGMTNPEVIQNLERGYRMVRPDNC 235

Query: 354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            + +  ++        C + +P+ RPT   +   LE
Sbjct: 236 PEELYQLM------RLCWKERPEDRPTFDYLRSVLE 265

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 72.7 bits (178), Expect = 3e-14
 Identities = 39/302 (12%), Positives = 79/302 (26%), Gaps = 93/302 (30%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFV----------------------- 186
           +G     +  +A +   G+   +   + +E   S  +                       
Sbjct: 81  LGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAK 140

Query: 187 ----------------------------VYSPQCMFFIYEYME--RGSLFCVLRDDDEAI 216
                                              FF+Y  M+    +   VL       
Sbjct: 141 VHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTH 200

Query: 217 E-LNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD 275
           + L    R+ +   V   L+ LHH     +VH  +   +I+L+     F+  F  +    
Sbjct: 201 KSLVHHARLQLTLQVIRLLASLHHY---GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDG 257

Query: 276 VDSSNRTLQAGTYGYIALELVYTMV-----------VTEKCVIYSFGVVALEVLMGTHP- 323
                R + + + G+   EL                +T     ++ G+V   +     P 
Sbjct: 258 ----ARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPI 313

Query: 324 -GELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQ 382
             +  L  S      I         +  P     ++ ++         LR   + R    
Sbjct: 314 TKDAALGGSE----WIFRSCK---NIPQP-----VRALL------EGFLRYPKEDRLLPL 355

Query: 383 RI 384
           + 
Sbjct: 356 QA 357

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 69/292 (23%), Positives = 105/292 (35%), Gaps = 76/292 (26%)

Query: 143 EYFHIRYCIGTGGYDSVYKAEL--PDGKV--VALKKLHH--SETEDSAF----------- 185
              HI   IG+G    V    L  P  +   VA+K L    +E +   F           
Sbjct: 49  SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFD 108

Query: 186 ---------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSY 236
                    VV   +    + EYME GSL   LR  D   +    + + +++ V   + Y
Sbjct: 109 HPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDG--QFTIMQLVGMLRGVGAGMRY 166

Query: 237 LHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI----- 291
           L        VHRD+++ N+L++SNL   V+DFG  R+L+ D        G  G I     
Sbjct: 167 LS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTG--GKIPIRWT 221

Query: 292 ALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSP 350
           A E +     +    ++SFGVV  EVL  G  P                     Y  ++ 
Sbjct: 222 APEAIAFRTFSSASDVWSFGVVMWEVLAYGERP---------------------YWNMT- 259

Query: 351 PINQKIIQDI-------------ILVSTIALACLRSKPKSRPTMQRISQELE 389
             N+ +I  +               +  + L C       RP   +I   L+
Sbjct: 260 --NRDVISSVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLD 309

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 71.0 bits (175), Expect = 4e-14
 Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 42/204 (20%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF------------------------ 185
           +G G +  VY+A  +  G  VA+K +       +                          
Sbjct: 19  LGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYN 78

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLR------DDDEAIELNWTRRMNIVKSVAHALSYLHH 239
                  ++ + E    G +   L+       ++EA      R    +  +   + YLH 
Sbjct: 79  YFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEA------RH--FMHQIITGMLYLHS 130

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM 299
                I+HRD++ +N+LL  N+   +ADFG    L +         GT  YI+ E+    
Sbjct: 131 HG---ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRS 187

Query: 300 VVTEKCVIYSFGVVALEVLMGTHP 323
               +  ++S G +   +L+G  P
Sbjct: 188 AHGLESDVWSLGCMFYTLLIGRPP 211

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 72.1 bits (177), Expect = 4e-14
 Identities = 54/279 (19%), Positives = 95/279 (34%), Gaps = 64/279 (22%)

Query: 151 IGTGGYDSVYKAELPDGK----VVALKKLH--HSETEDSAF------------------- 185
           IG G +  VY   L D        A+K L+      E S F                   
Sbjct: 97  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 156

Query: 186 -VVYSPQC-MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
            +    +     +  YM+ G L   +R++     +     +     VA  + +L      
Sbjct: 157 GICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTV--KDLIGFGLQVAKGMKFLASK--- 211

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI-----ALELVYT 298
             VHRD+++ N +L+      VADFG  R +     +      T   +     ALE + T
Sbjct: 212 KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV-HNKTGAKLPVKWMALESLQT 270

Query: 299 MVVTEKCVIYSFGVVALEVLM-------GTHPGELLLSLSSSSGPKIMLIDILYQRLSPP 351
              T K  ++SFGV+  E++          +  ++ + L               +RL  P
Sbjct: 271 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG------------RRLLQP 318

Query: 352 IN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                 + +++      L C   K + RP+   +   + 
Sbjct: 319 EYCPDPLYEVM------LKCWHPKAEMRPSFSELVSRIS 351

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 70.7 bits (174), Expect = 6e-14
 Identities = 50/209 (23%), Positives = 82/209 (39%), Gaps = 43/209 (20%)

Query: 145 FHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSA------------------- 184
           F I   +G G + +VY A E  +  ++ALK L  S+ E                      
Sbjct: 16  FDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPN 75

Query: 185 -----FVVYSPQCMFFIYEYMERGSLFCVLR-----DDDEAIELNWTRRMNIVKSVAHAL 234
                   +  + ++ + E+  RG L+  L+     D+  +           ++ +A AL
Sbjct: 76  ILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRS------AT--FMEELADAL 127

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE 294
            Y H      ++HRDI   N+L+    E  +ADFG        S  R    GT  Y+  E
Sbjct: 128 HYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVH--APSLRRRTMCGTLDYLPPE 182

Query: 295 LVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           ++      EK  ++  GV+  E L+G  P
Sbjct: 183 MIEGKTHDEKVDLWCAGVLCYEFLVGMPP 211

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 52/212 (24%), Positives = 84/212 (39%), Gaps = 38/212 (17%)

Query: 145 FHIRYCIGTGGYDSVYKAELPD-GKVVALKKLH-----------HSETE-------DSAF 185
           F I   IG G +  V   ++   G+V A+K ++               E       D  +
Sbjct: 63  FEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRW 122

Query: 186 VV---YS---PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH 239
           +    ++      ++ + EY   G L  +L    E I     R   + + V  A+  +H 
Sbjct: 123 ITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMAR-FYLAEIVM-AIDSVH- 179

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA-GTYGYIALELVYT 298
                 VHRDI  +NILL+      +ADFG+   L  D + R+L A GT  Y++ E++  
Sbjct: 180 --RLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQA 237

Query: 299 MVVTEKCVIY-------SFGVVALEVLMGTHP 323
           +        Y       + GV A E+  G  P
Sbjct: 238 VGGGPGTGSYGPECDWWALGVFAYEMFYGQTP 269

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 70.3 bits (173), Expect = 8e-14
 Identities = 61/280 (21%), Positives = 103/280 (36%), Gaps = 58/280 (20%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGKV-VALKKLHHSETEDSAF---------------- 185
               +++ +G G Y  VY+       + VA+K L     E   F                
Sbjct: 13  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLV 72

Query: 186 ----VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC 241
               V       + I E+M  G+L   LR+ +   E++    + +   ++ A+ YL    
Sbjct: 73  QLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQ-EVSAVVLLYMATQISSAMEYLE--- 128

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI-----ALELV 296
             + +HRD+++ N L+  N    VADFG  RL+  D    T  A           A E +
Sbjct: 129 KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD----TYTAHAGAKFPIKWTAPESL 184

Query: 297 YTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQ-----RLSP 350
                + K  +++FGV+  E+   G  P            P I L  +        R+  
Sbjct: 185 AYNKFSIKSDVWAFGVLLWEIATYGMSP-----------YPGIDLSQVYELLEKDYRMER 233

Query: 351 PIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           P    + + +++       AC +  P  RP+   I Q  E
Sbjct: 234 PEGCPEKVYELM------RACWQWNPSDRPSFAEIHQAFE 267

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 70.8 bits (174), Expect = 8e-14
 Identities = 55/280 (19%), Positives = 93/280 (33%), Gaps = 66/280 (23%)

Query: 151 IGTGGYDSVYKAELPDGK----VVALKKLH--HSETEDSAF------------------- 185
           IG G +  VY   L D        A+K L+      E S F                   
Sbjct: 33  IGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL 92

Query: 186 -VVYSPQC-MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
            +    +     +  YM+ G L   +R++           +     VA  + YL    + 
Sbjct: 93  GICLRSEGSPLVVLPYMKHGDLRNFIRNETH--NPTVKDLIGFGLQVAKGMKYLA---SK 147

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI-----ALELVYT 298
             VHRD+++ N +L+      VADFG  R +            T   +     ALE + T
Sbjct: 148 KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSV-HNKTGAKLPVKWMALESLQT 206

Query: 299 MVVTEKCVIYSFGVVALEVLM-------GTHPGELLLSLSSSSGPKIMLIDILYQRLSPP 351
              T K  ++SFGV+  E++          +  ++ + L               +RL  P
Sbjct: 207 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQG------------RRLLQP 254

Query: 352 IN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                 + +       + L C   K + RP+   +   + 
Sbjct: 255 EYCPDPLYE-------VMLKCWHPKAEMRPSFSELVSRIS 287

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 70.8 bits (174), Expect = 9e-14
 Identities = 57/290 (19%), Positives = 101/290 (34%), Gaps = 64/290 (22%)

Query: 138 LIDATEYFHIRYCIGTGGYDSVYKAEL-PDGK----VVALK--KLHHSETEDSAFV---- 186
           +   TE       +G+G + +V+K    P+G+     V +K  +         A      
Sbjct: 9   IFKETE-LRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHML 67

Query: 187 ---------------VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
                          +     +  + +Y+  GSL   +R    A+       +N    +A
Sbjct: 68  AIGSLDHAHIVRLLGLCPGSSLQLVTQYLPLGSLLDHVRQHRGALGPQ--LLLNWGVQIA 125

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAG----- 286
             + YL       +VHR++++ N+LL S  +  VADFG   LL  D              
Sbjct: 126 KGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIK 182

Query: 287 -TYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDIL 344
                 ALE ++    T +  ++S+GV   E++  G  P              + L ++ 
Sbjct: 183 WM----ALESIHFGKYTHQSDVWSYGVTVWELMTFGAEP-----------YAGLRLAEVP 227

Query: 345 YQ-----RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                  RL+ P    I      V  + + C       RPT + ++ E  
Sbjct: 228 DLLEKGERLAQPQICTID-----VYMVMVKCWMIDENIRPTFKELANEFT 272

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 60/282 (21%), Positives = 95/282 (33%), Gaps = 70/282 (24%)

Query: 151 IGTGGYDSVYKAELPDGK----VVALKKLH--HSETEDSAF------------------- 185
           IG G +  VY  E  D        A+K L       +  AF                   
Sbjct: 29  IGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALI 88

Query: 186 -VVYSPQCMFFI-YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL--HHDC 241
            ++  P+ +  +   YM  G L   +R             ++    VA  + YL      
Sbjct: 89  GIMLPPEGLPHVLLPYMCHGDLLQFIRSPQR--NPTVKDLISFGLQVARGMEYLAEQK-- 144

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYG------YIALEL 295
               VHRD+++ N +L+ +    VADFG  R  D+                   + ALE 
Sbjct: 145 ---FVHRDLAARNCMLDESFTVKVADFGLAR--DILDREYYSVQQHRHARLPVKWTALES 199

Query: 296 VYTMVVTEKCVIYSFGVVALEVLM-------GTHPGELLLSLSSSSGPKIMLIDILYQRL 348
           + T   T K  ++SFGV+  E+L           P +L   L+              +RL
Sbjct: 200 LQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQG------------RRL 247

Query: 349 SPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
             P      +  ++        C  + P  RPT + +  E+E
Sbjct: 248 PQPEYCPDSLYQVM------QQCWEADPAVRPTFRVLVGEVE 283

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 50/273 (18%), Positives = 99/273 (36%), Gaps = 56/273 (20%)

Query: 151 IGTGGYDSVYKAELPDGKV---VALKKLHHSETEDSA---FV------------------ 186
           +G+G + +V K      KV   VA+K L +   + +     +                  
Sbjct: 25  LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMI 84

Query: 187 -VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL--HHDCTP 243
            +   +    + E  E G L   L+ +     +     + +V  V+  + YL   +    
Sbjct: 85  GICEAESWMLVMEMAELGPLNKYLQQNRH---VKDKNIIELVHQVSMGMKYLEESN---- 137

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGT---YGYIALELVYTMV 300
             VHRD+++ N+LL +   A ++DFG  + L  D +    Q        + A E +    
Sbjct: 138 -FVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYK 196

Query: 301 VTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIM-LIDILYQRLSPPIN--QKI 356
            + K  ++SFGV+  E    G  P   +       G ++  +++    R+  P    +++
Sbjct: 197 FSSKSDVWSFGVLMWEAFSYGQKPYRGM------KGSEVTAMLEKGE-RMGCPAGCPREM 249

Query: 357 IQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                    +   C     ++RP    +   L 
Sbjct: 250 YD-------LMNLCWTYDVENRPGFAAVELRLR 275

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 50/223 (22%), Positives = 81/223 (36%), Gaps = 41/223 (18%)

Query: 131 GKILYENLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETED-- 182
           G  +       +E +     +G+G Y  V    +       A+K      +  S      
Sbjct: 25  GMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLL 84

Query: 183 ---------------SAFVVY-SPQCMFFIYEYMERGSLFCVLRDDDEAIEL-NWTRRM- 224
                            +  +   +  + + E  + G LF      DE I    +     
Sbjct: 85  EEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELF------DEIIHRMKFNEVDA 138

Query: 225 -NIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSN 280
             I+K V   ++YLH     +IVHRD+   N+LL S  +     + DFG   + + +   
Sbjct: 139 AVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFE-NQKK 194

Query: 281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
              + GT  YIA E V      EKC ++S GV+   +L G  P
Sbjct: 195 MKERLGTAYYIAPE-VLRKKYDEKCDVWSIGVILFILLAGYPP 236

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 68.9 bits (169), Expect = 6e-13
 Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 47/213 (22%)

Query: 145 FHIRYCIGTGGYDSVYKAELPD-GKVVALKKLH-----------HSETE-------DSAF 185
           F I   IG G +  V   +  D  K+ A+K ++           +   E       +  F
Sbjct: 17  FEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPF 76

Query: 186 VV---YS---PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRM--NIVK----SVAHA 233
           +V   YS    + MF + + +  G L   L+ +                VK     +  A
Sbjct: 77  LVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQN---------VHFKEETVKLFICELVMA 127

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIAL 293
           L YL +     I+HRD+  +NILL+ +    + DF    +L  ++   T+ AGT  Y+A 
Sbjct: 128 LDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTM-AGTKPYMAP 183

Query: 294 ELVYTMVVTE--KCV-IYSFGVVALEVLMGTHP 323
           E+  +         V  +S GV A E+L G  P
Sbjct: 184 EMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRP 216

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 56/290 (19%), Positives = 99/290 (34%), Gaps = 77/290 (26%)

Query: 151 IGTGGYDSVYKAELPDGK----VVALKKL---HHSETEDSAFV----------------- 186
           +G G + SV +A+L         VA+K L     + ++   F+                 
Sbjct: 31  LGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKL 90

Query: 187 ---------VYSPQCMFFIYEYMERGSLFCVLRD---DDEAIELNWTRRMNIVKSVAHAL 234
                             I  +M+ G L   L      +    L     +  +  +A  +
Sbjct: 91  VGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGM 150

Query: 235 SYL--HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI- 291
            YL   +      +HRD+++ N +L  ++   VADFG  R   + S +   + G    + 
Sbjct: 151 EYLSSRN-----FIHRDLAARNCMLAEDMTVCVADFGLSR--KIYSGD-YYRQGCASKLP 202

Query: 292 ----ALELVYTMVVTEKCVIYSFGVVALEVLM-------GTHPGELLLSLSSSSGPKIML 340
               ALE +   + T    +++FGV   E++        G    E+   L          
Sbjct: 203 VKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGG------- 255

Query: 341 IDILYQRLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                 RL  P    + + D++        C  + PK RP+   +  ELE
Sbjct: 256 -----NRLKQPPECMEEVYDLM------YQCWSADPKQRPSFTCLRMELE 294

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 54/212 (25%), Positives = 87/212 (41%), Gaps = 40/212 (18%)

Query: 145 FHIRYCIGTGGYDSVYKAELPD-GKVVALKKLH-----------HSETE-------DSAF 185
           F I   IG G +  V   +L +  KV A+K L+               E       DS +
Sbjct: 76  FEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKW 135

Query: 186 VV---YS---PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTR--RMNIVKSVAHALSYL 237
           +    Y+      ++ + +Y   G L  +L   ++ +     R     +V     A+  +
Sbjct: 136 ITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVI----AIDSV 191

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA-GTYGYIALELV 296
           H       VHRDI  +NIL++ N    +ADFG+   L  D + ++  A GT  YI+ E++
Sbjct: 192 H---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEIL 248

Query: 297 YTMVVTEK-----CVIYSFGVVALEVLMGTHP 323
             M   +      C  +S GV   E+L G  P
Sbjct: 249 QAMEGGKGRYGPECDWWSLGVCMYEMLYGETP 280

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 57/289 (19%), Positives = 100/289 (34%), Gaps = 76/289 (26%)

Query: 151 IGTGGYDSVYKAELPDGK----VVA---LKKLHHSETEDSAF------------------ 185
           +G G + SV +  L         VA   +K  + S+ E   F                  
Sbjct: 42  LGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRL 101

Query: 186 --VVY--SPQCMFFIY---EYMERGSLFCVLR---DDDEAIELNWTRRMNIVKSVAHALS 235
             V    S Q +        +M+ G L   L     +     +     +  +  +A  + 
Sbjct: 102 LGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGME 161

Query: 236 YL--HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI-- 291
           YL   +      +HRD+++ N +L  ++   VADFG  +   + S +   + G    +  
Sbjct: 162 YLSNRN-----FLHRDLAARNCMLRDDMTVCVADFGLSK--KIYSGD-YYRQGRIAKMPV 213

Query: 292 ---ALELVYTMVVTEKCVIYSFGVVALEVLM-------GTHPGELLLSLSSSSGPKIMLI 341
              A+E +   V T K  +++FGV   E+         G    E+   L           
Sbjct: 214 KWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHG-------- 265

Query: 342 DILYQRLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                RL  P +    + +I+       +C R+ P  RPT   +  +LE
Sbjct: 266 ----HRLKQPEDCLDELYEIM------YSCWRTDPLDRPTFSVLRLQLE 304

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 55/284 (19%), Positives = 98/284 (34%), Gaps = 79/284 (27%)

Query: 151 IGTGGYDSVYKAEL--PDGKV--VALKKLH--HSETEDSAFV------------------ 186
           IG G +  V++     P+     VA+K      S++    F+                  
Sbjct: 398 IGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 457

Query: 187 -VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH-HDCTPS 244
            V +   ++ I E    G L   L+    +++L     +     ++ AL+YL        
Sbjct: 458 GVITENPVWIIMELCTLGELRSFLQVRKFSLDL--ASLILYAYQLSTALAYLESKRF--- 512

Query: 245 IVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI-----ALELVYTM 299
            VHRDI++ N+L++SN    + DFG  R ++  +  +     + G +     A E +   
Sbjct: 513 -VHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKA----SKGKLPIKWMAPESINFR 567

Query: 300 VVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ 358
             T    ++ FGV   E+LM G  P                     +Q +    N  +I 
Sbjct: 568 RFTSASDVWMFGVCMWEILMHGVKP---------------------FQGVK---NNDVIG 603

Query: 359 DI-------------ILVSTIALACLRSKPKSRPTMQRISQELE 389
            I               + ++   C    P  RP    +  +L 
Sbjct: 604 RIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLS 647

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 56/275 (20%), Positives = 105/275 (38%), Gaps = 54/275 (19%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDS------------------- 183
           +   +   IG G +  V   +   G  VA+K + +  T  +                   
Sbjct: 193 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQL 251

Query: 184 -AFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL-HHDC 241
              +V     ++ + EYM +GSL   LR    +  L     +     V  A+ YL  ++ 
Sbjct: 252 LGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRS-VLGGDCLLKFSLDVCEAMEYLEGNNF 310

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVV 301
               VHRD+++ N+L++ +  A V+DFG  +          L      + A E +     
Sbjct: 311 ----VHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL---PVKWTAPEALREKKF 363

Query: 302 TEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQ-----RLSPPIN-Q 354
           + K  ++SFG++  E+   G  P            P+I L D++ +     ++  P    
Sbjct: 364 STKSDVWSFGILLWEIYSFGRVP-----------YPRIPLKDVVPRVEKGYKMDAPDGCP 412

Query: 355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
             + D++        C      +RPT  ++ ++LE
Sbjct: 413 PAVYDVM------KNCWHLDAATRPTFLQLREQLE 441

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 66.3 bits (162), Expect = 6e-12
 Identities = 46/215 (21%), Positives = 81/215 (37%), Gaps = 42/215 (19%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETEDS---------- 183
             ++ +  +  +G G +  V    +   G+  A+K     ++     ++S          
Sbjct: 23  IFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQ 82

Query: 184 --------AFVVY-SPQCMFFIYEYMERGSLFCVLRDDDEAIEL-NWTRRM--NIVKSVA 231
                    +  +      + + E    G LF      DE I    ++      I++ V 
Sbjct: 83  LDHPNIMKLYEFFEDKGYFYLVGEVYTGGELF------DEIISRKRFSEVDAARIIRQVL 136

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTLQAGTY 288
             ++Y+H +    IVHRD+   N+LL S  +     + DFG     +     +    GT 
Sbjct: 137 SGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDK-IGTA 192

Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
            YIA E V      EKC ++S GV+   +L G  P
Sbjct: 193 YYIAPE-VLHGTYDEKCDVWSTGVILYILLSGCPP 226

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 64.2 bits (157), Expect = 8e-12
 Identities = 56/282 (19%), Positives = 96/282 (34%), Gaps = 75/282 (26%)

Query: 151 IGTGGYDSVYKAEL--PDGKV--VALKKLH--HSETEDSAFV------------------ 186
           IG G +  V++     P+     VA+K      S++    F+                  
Sbjct: 23  IGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI 82

Query: 187 -VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL-HHDCTPS 244
            V +   ++ I E    G L   L+    +++L     +     ++ AL+YL        
Sbjct: 83  GVITENPVWIIMELCTLGELRSFLQVRKYSLDLA--SLILYAYQLSTALAYLESKRF--- 137

Query: 245 IVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI---ALELVYTMVV 301
            VHRDI++ N+L++SN    + DFG  R   ++ S     +     I   A E +     
Sbjct: 138 -VHRDIAARNVLVSSNDCVKLGDFGLSR--YMEDSTYYKASKGKLPIKWMAPESINFRRF 194

Query: 302 TEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI 360
           T    ++ FGV   E+LM G  P                     +Q +    N  +I  I
Sbjct: 195 TSASDVWMFGVCMWEILMHGVKP---------------------FQGVK---NNDVIGRI 230

Query: 361 -------------ILVSTIALACLRSKPKSRPTMQRISQELE 389
                          + ++   C    P  RP    +  +L 
Sbjct: 231 ENGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLS 272

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 64.1 bits (157), Expect = 1e-11
 Identities = 51/283 (18%), Positives = 91/283 (32%), Gaps = 77/283 (27%)

Query: 151 IGTGGYDSVYKAEL--PDGKV--VALKKLHHSETEDS--AFV------------------ 186
           +G G +  VY+       G+   VA+K      T D+   F+                  
Sbjct: 20  LGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI 79

Query: 187 -VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL--HHDCTP 243
            +   +  + I E    G L   L  +  ++++     +     +  A++YL   +    
Sbjct: 80  GIIEEEPTWIIMELYPYGELGHYLERNKNSLKV--LTLVLYSLQICKAMAYLESIN---- 133

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI---ALELVYTMV 300
             VHRDI+  NIL+ S     + DFG  R   ++  +    + T   I   + E +    
Sbjct: 134 -CVHRDIAVRNILVASPECVKLGDFGLSR--YIEDEDYYKASVTRLPIKWMSPESINFRR 190

Query: 301 VTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD 359
            T    ++ F V   E+L  G  P                     +  L    N+ +I  
Sbjct: 191 FTTASDVWMFAVCMWEILSFGKQP---------------------FFWLE---NKDVIGV 226

Query: 360 I-------------ILVSTIALACLRSKPKSRPTMQRISQELE 389
           +              ++ T+   C    P  RP    +   L 
Sbjct: 227 LEKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLS 269

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 11/145 (7%)

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMN-----IVKSVAHALSYLHHD 240
           ++ +   ++ IYEYME  S+           +             I+KSV ++ SY+H++
Sbjct: 111 IITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNE 170

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT-- 298
              +I HRD+  +NIL++ N    ++DFG    +  D   +    GTY ++  E      
Sbjct: 171 K--NICHRDVKPSNILMDKNGRVKLSDFGESEYMV-DKKIKGS-RGTYEFMPPEFFSNES 226

Query: 299 MVVTEKCVIYSFGVVALEVLMGTHP 323
                K  I+S G+    +     P
Sbjct: 227 SYNGAKVDIWSLGICLYVMFYNVVP 251

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 51/289 (17%), Positives = 96/289 (33%), Gaps = 82/289 (28%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDS------------------- 183
           +   +   IG G +  V   +   G  VA+K + +  T  +                   
Sbjct: 21  KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQL 79

Query: 184 -AFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL-HHDC 241
              +V     ++ + EYM +GSL   LR    +  L     +     V  A+ YL  ++ 
Sbjct: 80  LGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRS-VLGGDCLLKFSLDVCEAMEYLEGNNF 138

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTL-------QAGTYGYIALE 294
               VHRD+++ N+L++ +  A V+DFG  +          L       +A         
Sbjct: 139 ----VHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREK----- 189

Query: 295 LVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN 353
                  + K  ++SFG++  E+   G  P                     Y R+     
Sbjct: 190 -----KFSTKSDVWSFGILLWEIYSFGRVP---------------------YPRIP---L 220

Query: 354 QKIIQDII-------------LVSTIALACLRSKPKSRPTMQRISQELE 389
           + ++  +               V  +   C       RP+  ++ ++LE
Sbjct: 221 KDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLE 269

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 45/304 (14%), Positives = 96/304 (31%), Gaps = 80/304 (26%)

Query: 133 ILYENLIDATEYFHIRYCIGTGGYDSVYKAEL--------PDGKVVALKKLHH-SETEDS 183
           + ++  I   +       +G G +  ++K                V LK L         
Sbjct: 1   VFHK--IRNED-LIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSE 57

Query: 184 AF--------------------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRR 223
           +F                    V         + E+++ GSL   L+ +   I + W  +
Sbjct: 58  SFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILW--K 115

Query: 224 MNIVKSVAHALSYL--HHDCTPSIVHRDISSNNILLNSNLEAF--------VADFGTVRL 273
           + + K +A A+ +L  +      ++H ++ + NILL    +          ++D G    
Sbjct: 116 LEVAKQLAAAMHFLEENT-----LIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISIT 170

Query: 274 LDVDSSNRTLQAGTYGYI-----ALE-LVYTMVVTEKCVIYSFGVVALEVLM-GTHPGEL 326
           +                        E +     +      +SFG    E+   G  P   
Sbjct: 171 VLPKD---------ILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKP--- 218

Query: 327 LLSLSSSSGPKIM-LIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRIS 385
              LS+    + +   +  + +L  P   ++         +   C+  +P  RP+ + I 
Sbjct: 219 ---LSALDSQRKLQFYEDRH-QLPAPKAAELAN-------LINNCMDYEPDHRPSFRAII 267

Query: 386 QELE 389
           ++L 
Sbjct: 268 RDLN 271

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 52/214 (24%), Positives = 82/214 (38%), Gaps = 41/214 (19%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETED----------- 182
              E ++I   +G G +  V K  +    +  A+K        + +T             
Sbjct: 19  TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKL 78

Query: 183 ------SAFVVY-SPQCMFFIYEYMERGSLFCVLRDDDEAIEL-NWTRRM--NIVKSVAH 232
                   F +       + + E    G LF      DE I+   ++      I+K V  
Sbjct: 79  DHPNIMKLFEILEDSSSFYIVGELYTGGELF------DEIIKRKRFSEHDAARIIKQVFS 132

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTLQAGTYG 289
            ++Y+H     +IVHRD+   NILL S  +     + DFG       ++  +    GT  
Sbjct: 133 GITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDR-IGTAY 188

Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           YIA E V      EKC ++S GV+   +L GT P
Sbjct: 189 YIAPE-VLRGTYDEKCDVWSAGVILYILLSGTPP 221

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 60/311 (19%), Positives = 111/311 (35%), Gaps = 78/311 (25%)

Query: 151 IGTGGYDSVYKAELPDGK------VVALKKL--HHSETEDSAF----------------- 185
           +G G +  VY+              VA+K +    S  E   F                 
Sbjct: 33  LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 92

Query: 186 ---VVYSPQCMFFIYEYMERGSLFCVLR-------DDDEAIELNWTRRMNIVKSVAHALS 235
              VV   Q    I E M RG L   LR       ++      + ++ + +   +A  ++
Sbjct: 93  LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMA 152

Query: 236 YL--HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI-- 291
           YL  +       VHRD+++ N ++  +    + DFG  R  D+  ++   + G  G +  
Sbjct: 153 YLNANK-----FVHRDLAARNCMVAEDFTVKIGDFGMTR--DIYETD-YYRKGGKGLLPV 204

Query: 292 ---ALELVYTMVVTEKCVIYSFGVVALEVLM-GTHP------GELLLSLSSSSGPKIMLI 341
              + E +   V T    ++SFGVV  E+      P       ++L  +           
Sbjct: 205 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEG-------- 256

Query: 342 DILYQRLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKGLKE 400
                 L  P N   ++ +++        C +  PK RP+   I   ++ +  M+ G +E
Sbjct: 257 ----GLLDKPDNCPDMLFELM------RMCWQYNPKMRPSFLEIISSIKEE--MEPGFRE 304

Query: 401 ISIPEMRNQEM 411
           +S       ++
Sbjct: 305 VSFYYSEENKL 315

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 61.7 bits (150), Expect = 6e-11
 Identities = 32/264 (12%), Positives = 65/264 (24%), Gaps = 75/264 (28%)

Query: 148 RY----CIGTGGYDSVYKAELPD---GKVVALKKLHHSETEDSAFV-------------- 186
           RY      G       ++A   D    + VAL  +          +              
Sbjct: 32  RYRLLIFHGGVPPLQFWQAL--DTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRID 89

Query: 187 ------VY----SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSY 236
                 V     +      + E++  GSL  V          +    +  ++S+A A   
Sbjct: 90  KPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADT-----SPSPVGAIRAMQSLAAAADA 144

Query: 237 LHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELV 296
            H      +       + + ++ + +  +A   T+   +                     
Sbjct: 145 AHRA---GVALSIDHPSRVRVSIDGDVVLAYPATMPDANPQDD----------------- 184

Query: 297 YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI 356
                     I   G     +L+   P    L  +               +   P    I
Sbjct: 185 ----------IRGIGASLYALLVNRWP----LPEAGVRSGLAPAERDTAGQPIEP--ADI 228

Query: 357 IQDI-ILVSTIALACLRSKPKSRP 379
            +DI   +S +A   ++     R 
Sbjct: 229 DRDIPFQISAVAARSVQGDGGIRS 252

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 61.8 bits (151), Expect = 9e-11
 Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 41/150 (27%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKK--LHHSETEDSAF---------------------- 185
           +G G + +VYKA +    ++VA+KK  L H                              
Sbjct: 18  LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGL 77

Query: 186 --VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH----ALSYLHH 239
                    +  ++++ME   L  +++D+   +        + +K+        L YLH 
Sbjct: 78  LDAFGHKSNISLVFDFMET-DLEVIIKDNSLVLT------PSHIKAYMLMTLQGLEYLHQ 130

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFG 269
                I+HRD+  NN+LL+ N    +ADFG
Sbjct: 131 H---WILHRDLKPNNLLLDENGVLKLADFG 157

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 62.5 bits (152), Expect = 9e-11
 Identities = 46/208 (22%), Positives = 79/208 (37%), Gaps = 30/208 (14%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFV------------ 186
              +++ I   +GTG +  V++  E   G   A K +      D   V            
Sbjct: 154 HVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRH 213

Query: 187 --------VY-SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL 237
                    +     M  IYE+M  G LF   +  DE  +++    +  ++ V   L ++
Sbjct: 214 PTLVNLHDAFEDDNEMVMIYEFMSGGELFE--KVADEHNKMSEDEAVEYMRQVCKGLCHM 271

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFV--ADFGTVRLLDVDSSNRTLQAGTYGYIALEL 295
           H +   + VH D+   NI+  +     +   DFG    LD   S +    GT  + A E+
Sbjct: 272 HEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVT-TGTAEFAAPEV 327

Query: 296 VYTMVVTEKCVIYSFGVVALEVLMGTHP 323
                V     ++S GV++  +L G  P
Sbjct: 328 AEGKPVGYYTDMWSVGVLSYILLSGLSP 355

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 61.4 bits (150), Expect = 9e-11
 Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 39/147 (26%)

Query: 151 IGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF------------------------V 186
           IG G Y  VYKA+   G+  ALKK+   E ED                           V
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIR-LEKEDEGIPSTTIREISILKELKHSNIVKLYDV 68

Query: 187 VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH----ALSYLHHDCT 242
           +++ + +  ++E++++  L  +L   +  +E          KS        ++Y H    
Sbjct: 69  IHTKKRLVLVFEHLDQ-DLKKLLDVCEGGLE------SVTAKSFLLQLLNGIAYCHDRR- 120

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFG 269
             ++HRD+   N+L+N   E  +ADFG
Sbjct: 121 --VLHRDLKPQNLLINREGELKIADFG 145

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 61.4 bits (150), Expect = 9e-11
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 39/147 (26%)

Query: 151 IGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF------------------------V 186
           +G G Y  VYKA+   G++VALK++   + ED                           V
Sbjct: 29  VGEGTYGVVYKAKDSQGRIVALKRIR-LDAEDEGIPSTAIREISLLKELHHPNIVSLIDV 87

Query: 187 VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH----ALSYLHHDCT 242
           ++S +C+  ++E+ME+  L  VL ++   ++       + +K   +     +++ H    
Sbjct: 88  IHSERCLTLVFEFMEK-DLKKVLDENKTGLQ------DSQIKIYLYQLLRGVAHCHQHR- 139

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFG 269
             I+HRD+   N+L+NS+    +ADFG
Sbjct: 140 --ILHRDLKPQNLLINSDGALKLADFG 164

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 45/210 (21%), Positives = 78/210 (37%), Gaps = 34/210 (16%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFV------------ 186
              +Y+ I   +G+G +  V++  E   G+V   K ++     D   V            
Sbjct: 48  SVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHH 107

Query: 187 --------VY-SPQCMFFIYEYMERGSLF--CVLRDDDEAIELNWTRRMNIVKSVAHALS 235
                    +     M  I E++  G LF         E  +++    +N ++     L 
Sbjct: 108 PKLINLHDAFEDKYEMVLILEFLSGGELFDRIA----AEDYKMSEAEVINYMRQACEGLK 163

Query: 236 YLHHDCTPSIVHRDISSNNILLNSNLEAFV--ADFGTVRLLDVDSSNRTLQAGTYGYIAL 293
           ++H     SIVH DI   NI+  +   + V   DFG    L+ D   +     T  + A 
Sbjct: 164 HMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVT-TATAEFAAP 219

Query: 294 ELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           E+V    V     +++ GV+   +L G  P
Sbjct: 220 EIVDREPVGFYTDMWAIGVLGYVLLSGLSP 249

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 61.0 bits (149), Expect = 1e-10
 Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 40/148 (27%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF------------------------ 185
           IG G Y +V+KA      ++VALK++   + +D                           
Sbjct: 10  IGEGTYGTVFKAKNRETHEIVALKRVRL-DDDDEGVPSSALREICLLKELKHKNIVRLHD 68

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH----ALSYLHHDC 241
           V++S + +  ++E+ ++  L       +  ++        IVKS        L + H   
Sbjct: 69  VLHSDKKLTLVFEFCDQ-DLKKYFDSCNGDLD------PEIVKSFLFQLLKGLGFCHSRN 121

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFG 269
              ++HRD+   N+L+N N E  +A+FG
Sbjct: 122 ---VLHRDLKPQNLLINRNGELKLANFG 146

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 39/148 (26%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF------------------------ 185
           IG G Y  VYKA     G+VVALKK+   +TE                            
Sbjct: 11  IGEGTYGVVYKARNKLTGEVVALKKIRL-DTETEGVPSTAIREISLLKELNHPNIVKLLD 69

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH----ALSYLHHDC 241
           V+++   ++ ++E++ +  L   + D      +     + ++KS        L++ H   
Sbjct: 70  VIHTENKLYLVFEFLHQ-DLKKFM-DASALTGIP----LPLIKSYLFQLLQGLAFCHSHR 123

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFG 269
              ++HRD+   N+L+N+     +ADFG
Sbjct: 124 ---VLHRDLKPQNLLINTEGAIKLADFG 148

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 39/150 (26%)

Query: 151 IGTGGYDSVYKAELPD-GKVVALKKLHHSETED----SAF-------------------V 186
           +G G Y +VYK +      +VALK++   E E+    +A                    +
Sbjct: 10  LGEGTYATVYKGKSKLTDNLVALKEIR-LEHEEGAPCTAIREVSLLKDLKHANIVTLHDI 68

Query: 187 VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH----ALSYLHHDCT 242
           +++ + +  ++EY+++  L   L D    I       M+ VK         L+Y H    
Sbjct: 69  IHTEKSLTLVFEYLDK-DLKQYLDDCGNIIN------MHNVKLFLFQLLRGLAYCHR--- 118

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFGTVR 272
             ++HRD+   N+L+N   E  +ADFG  R
Sbjct: 119 QKVLHRDLKPQNLLINERGELKLADFGLAR 148

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 34/147 (23%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETED----SAF-------------------V 186
           +G G Y +VYK      G  VALK++   ++E+    +A                    V
Sbjct: 13  LGNGTYATVYKGLNKTTGVYVALKEVK-LDSEEGTPSTAIREISLMKELKHENIVRLYDV 71

Query: 187 VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH----ALSYLHHDCT 242
           +++   +  ++E+M+   L   + D            +N+VK         L++ H +  
Sbjct: 72  IHTENKLTLVFEFMDN-DLKKYM-DSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN-- 127

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFG 269
             I+HRD+   N+L+N   +  + DFG
Sbjct: 128 -KILHRDLKPQNLLINKRGQLKLGDFG 153

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 48/222 (21%), Positives = 81/222 (36%), Gaps = 52/222 (23%)

Query: 142 TEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETEDSAFV--------- 186
            + + +   +G+G    V  A E    K VA++     K       ++            
Sbjct: 134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEI 193

Query: 187 --------------VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNW-----TRRMNIV 227
                          +  +  + + E ME G LF      D+ +          +     
Sbjct: 194 LKKLNHPCIIKIKNFFDAEDYYIVLELMEGGELF------DKVVGNKRLKEATCKL--YF 245

Query: 228 KSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTLQ 284
             +  A+ YLH +    I+HRD+   N+LL+S  E     + DFG  ++L   S  RTL 
Sbjct: 246 YQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTL- 301

Query: 285 AGTYGYIALELVYTMVV---TEKCVIYSFGVVALEVLMGTHP 323
            GT  Y+A E++ ++           +S GV+    L G  P
Sbjct: 302 CGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPP 343

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 59/293 (20%), Positives = 104/293 (35%), Gaps = 80/293 (27%)

Query: 151 IGTGGYDSVYKAELPDGK------VVALKKLH-HSETEDSAF------------------ 185
           +G G +  V+ AE  +        +VA+K L   SE+    F                  
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108

Query: 186 --VVYSPQCMFFIYEYMERGSLFCVLR------------DDDEAIELNWTRRMNIVKSVA 231
             V    + +  ++EYM  G L   LR            +D     L   + + +   VA
Sbjct: 109 FGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVA 168

Query: 232 HALSYL--HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYG 289
             + YL   H      VHRD+++ N L+   L   + DFG  R  D+ S++   + G   
Sbjct: 169 AGMVYLAGLH-----FVHRDLATRNCLVGQGLVVKIGDFGMSR--DIYSTDYY-RVGGRT 220

Query: 290 YI-----ALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP------GELLLSLSSSSGPK 337
            +       E +     T +  ++SFGVV  E+   G  P       E +  ++      
Sbjct: 221 MLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQG---- 276

Query: 338 IMLIDILYQRLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                   + L  P      +  I+        C + +P+ R +++ +   L+
Sbjct: 277 --------RELERPRACPPEVYAIM------RGCWQREPQQRHSIKDVHARLQ 315

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 62/290 (21%), Positives = 102/290 (35%), Gaps = 78/290 (26%)

Query: 151 IGTGGYDSVYKAELPDGK------VVALKKL--HHSETEDSAF----------------- 185
           +G G +  VY+ ++           VA+K L    SE ++  F                 
Sbjct: 38  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 97

Query: 186 ---VVYSPQCMFFIYEYMERGSLFCVLR----DDDEAIELNWTRRMNIVKSVAHALSYL- 237
              V       F + E M  G L   LR       +   L     +++ + +A    YL 
Sbjct: 98  CIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE 157

Query: 238 -HHDCTPSIVHRDISSNNILLNSNLEAFV---ADFGTVRLLDVDSSNRTLQAGTYGYI-- 291
            +H      +HRDI++ N LL       V    DFG  R  D+  ++   + G    +  
Sbjct: 158 ENH-----FIHRDIAARNCLLTCPGPGRVAKIGDFGMAR--DIYRASYY-RKGGCAMLPV 209

Query: 292 ---ALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP------GELLLSLSSSSGPKIMLI 341
                E     + T K   +SFGV+  E+  +G  P       E+L  ++S         
Sbjct: 210 KWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSG-------- 261

Query: 342 DILYQRLSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                R+ PP N    + +       I   C + +P+ RP    I + +E
Sbjct: 262 ----GRMDPPKNCPGPVYR-------IMTQCWQHQPEDRPNFAIILERIE 300

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 60.3 bits (147), Expect = 3e-10
 Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 46/156 (29%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF------------------------ 185
           +G G Y  VYKA +    + VA+K++   E E+                           
Sbjct: 42  LGEGTYGEVYKAIDTVTNETVAIKRIRL-EHEEEGVPGTAIREVSLLKELQHRNIIELKS 100

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH----ALSYLHHDC 241
           V++    +  I+EY E   L   +   D+  +++    M ++KS  +     +++ H   
Sbjct: 101 VIHHNHRLHLIFEYAEN-DLKKYM---DKNPDVS----MRVIKSFLYQLINGVNFCHS-- 150

Query: 242 TPSIVHRDISSNNILLNSNLEAF-----VADFGTVR 272
               +HRD+   N+LL+ +  +      + DFG  R
Sbjct: 151 -RRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLAR 185

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 59.9 bits (146), Expect = 3e-10
 Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 40/148 (27%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF------------------------ 185
           IG G Y  V+K      G++VA+KK   SE +D                           
Sbjct: 11  IGEGSYGVVFKCRNRDTGQIVAIKKFLESE-DDPVIKKIALREIRMLKQLKHPNLVNLLE 69

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH----ALSYLHHDC 241
           V    + +  ++EY +  ++   L      +        ++VKS+      A+++ H   
Sbjct: 70  VFRRKRRLHLVFEYCDH-TVLHELDRYQRGVP------EHLVKSITWQTLQAVNFCHKH- 121

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFG 269
             + +HRD+   NIL+  +    + DFG
Sbjct: 122 --NCIHRDVKPENILITKHSVIKLCDFG 147

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 36/209 (17%), Positives = 74/209 (35%), Gaps = 46/209 (22%)

Query: 142 TEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETEDSAFV--------- 186
            + + +   IG G +  V +      G+  A+K     K   S    +  +         
Sbjct: 23  EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHM 82

Query: 187 -----------VY-SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRM-------NIV 227
                       Y S   ++ ++E+M+   L        E ++      +       + +
Sbjct: 83  LKHPHIVELLETYSSDGMLYMVFEFMDGADLC------FEIVKRADAGFVYSEAVASHYM 136

Query: 228 KSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTLQ 284
           + +  AL Y H +   +I+HRD+  + +LL S   +    +  FG    L         +
Sbjct: 137 RQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGR 193

Query: 285 AGTYGYIALELVYTMVVTEKCVIYSFGVV 313
            GT  ++A E+V      +   ++  GV+
Sbjct: 194 VGTPHFMAPEVVKREPYGKPVDVWGCGVI 222

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 41/211 (19%)

Query: 145 FHIRYCIGTGGYDSVYKAELPD-GKVVALKKLH-----------HSETE-------DSAF 185
           + +   IG G +  V         KV A+K L                E       +S +
Sbjct: 71  YEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW 130

Query: 186 VV---YS---PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTR--RMNIVKSVAHALSYL 237
           VV   Y+    + ++ + EYM  G L  ++ + D  +   W R     +V     AL  +
Sbjct: 131 VVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYD--VPEKWARFYTAEVVL----ALDAI 184

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA-GTYGYIALELV 296
           H       +HRD+  +N+LL+ +    +ADFGT   ++ +   R   A GT  YI+ E++
Sbjct: 185 HSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVL 241

Query: 297 YTMVVTEK----CVIYSFGVVALEVLMGTHP 323
            +          C  +S GV   E+L+G  P
Sbjct: 242 KSQGGDGYYGRECDWWSVGVFLYEMLVGDTP 272

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 62/290 (21%), Positives = 101/290 (34%), Gaps = 78/290 (26%)

Query: 151 IGTGGYDSVYKAELPDGK------VVALKKL--HHSETEDSAF----------------- 185
           +G G +  VY+ ++           VA+K L    SE ++  F                 
Sbjct: 79  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 138

Query: 186 ---VVYSPQCMFFIYEYMERGSLFCVLR----DDDEAIELNWTRRMNIVKSVAHALSYL- 237
              V       F + E M  G L   LR       +   L     +++ + +A    YL 
Sbjct: 139 CIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE 198

Query: 238 -HHDCTPSIVHRDISSNNILLNSNLEAFV---ADFGTVRLLDVDSSNRTLQAGTYGYI-- 291
            +H      +HRDI++ N LL       V    DFG  R  D+  +    + G    +  
Sbjct: 199 ENH-----FIHRDIAARNCLLTCPGPGRVAKIGDFGMAR--DIYRAGYY-RKGGCAMLPV 250

Query: 292 ---ALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP------GELLLSLSSSSGPKIMLI 341
                E     + T K   +SFGV+  E+  +G  P       E+L  ++S         
Sbjct: 251 KWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSG-------- 302

Query: 342 DILYQRLSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                R+ PP N    + +       I   C + +P+ RP    I + +E
Sbjct: 303 ----GRMDPPKNCPGPVYR-------IMTQCWQHQPEDRPNFAIILERIE 341

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 39/194 (20%), Positives = 70/194 (36%), Gaps = 42/194 (21%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFV--------------------VY- 188
           +G G +  V+K  E   G  +A K +     +D   V                     + 
Sbjct: 97  LGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFE 156

Query: 189 SPQCMFFIYEYMERGSLF--CVLRDDD----EAIELNWTRRMNIVKSVAHALSYLHHDCT 242
           S   +  + EY++ G LF   +    +    + I          +K +   + ++H    
Sbjct: 157 SKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILF--------MKQICEGIRHMHQM-- 206

Query: 243 PSIVHRDISSNNILLNSNLEAFV--ADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMV 300
             I+H D+   NIL  +     +   DFG  R        +    GT  ++A E+V    
Sbjct: 207 -YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVN-FGTPEFLAPEVVNYDF 264

Query: 301 VTEKCVIYSFGVVA 314
           V+    ++S GV+A
Sbjct: 265 VSFPTDMWSVGVIA 278

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 59.5 bits (145), Expect = 4e-10
 Identities = 29/153 (18%), Positives = 55/153 (35%), Gaps = 40/153 (26%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF------------------------ 185
           +G G Y  V K      G++VA+KK      +D                           
Sbjct: 33  VGEGSYGMVMKCRNKDTGRIVAIKKFL-ESDDDKMVKKIAMREIKLLKQLRHENLVNLLE 91

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH----ALSYLHHDC 241
           V    +  + ++E+++  ++   L      ++        +V+         + + H   
Sbjct: 92  VCKKKKRWYLVFEFVDH-TILDDLELFPNGLD------YQVVQKYLFQIINGIGFCHSH- 143

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLL 274
             +I+HRDI   NIL++ +    + DFG  R L
Sbjct: 144 --NIIHRDIKPENILVSQSGVVKLCDFGFARTL 174

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 35/204 (17%), Positives = 78/204 (38%), Gaps = 39/204 (19%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETED----------- 182
             TE + +   +G G +  V +  ++  G+  A       KL   + +            
Sbjct: 8   RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLL 67

Query: 183 ------SAFVVY-SPQCMFFIYEYMERGSLFCVLRDDDEAIEL-NWTRRM--NIVKSVAH 232
                             + I++ +  G LF      ++ +    ++     + ++ +  
Sbjct: 68  KHPNIVRLHDSISEEGHHYLIFDLVTGGELF------EDIVAREYYSEADASHCIQQILE 121

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTLQAGTYG 289
           A+ + H      +VHR++   N+LL S L+     +ADFG    ++ +       AGT G
Sbjct: 122 AVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPG 178

Query: 290 YIALELVYTMVVTEKCVIYSFGVV 313
           Y++ E++      +   +++ GV+
Sbjct: 179 YLSPEVLRKDPYGKPVDLWACGVI 202

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 54/234 (23%), Positives = 79/234 (33%), Gaps = 52/234 (22%)

Query: 131 GKILYENLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETEDSA 184
           G  + +      E +     +G+G Y  V    E       A+K     +       D  
Sbjct: 24  GMYVRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDN 83

Query: 185 FV----------------------------VY-SPQCMFFIYEYMERGSLFCVLRDDDEA 215
                                         V+   +  + + E+ E G LF      ++ 
Sbjct: 84  KNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELF------EQI 137

Query: 216 IEL-NWTRRM--NIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF---VADFG 269
           I    +      NI+K +   + YLH     +IVHRDI   NILL +        + DFG
Sbjct: 138 INRHKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLNIKIVDFG 194

Query: 270 TVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
                  D   R    GT  YIA E V      EKC ++S GV+   +L G  P
Sbjct: 195 LSSFFSKDYKLRDR-LGTAYYIAPE-VLKKKYNEKCDVWSCGVIMYILLCGYPP 246

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 58.8 bits (143), Expect = 8e-10
 Identities = 68/311 (21%), Positives = 112/311 (36%), Gaps = 87/311 (27%)

Query: 151 IGTGGYDSVYKAELPDGKV---VALKKL--HHSETEDSAF-------------------- 185
           IG G +  V KA +    +    A+K++  + S+ +   F                    
Sbjct: 33  IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLL 92

Query: 186 -VVYSPQCMFFIYEYMERGSLFCVLR-------------DDDEAIELNWTRRMNIVKSVA 231
                   ++   EY   G+L   LR              +  A  L+  + ++    VA
Sbjct: 93  GACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVA 152

Query: 232 HALSYL--HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYG 289
             + YL          +HRD+++ NIL+  N  A +ADFG  R  +V          T G
Sbjct: 153 RGMDYLSQKQ-----FIHRDLAARNILVGENYVAKIADFGLSRGQEV------YVKKTMG 201

Query: 290 YI-----ALE-LVYTMVVTEKCVIYSFGVVALEVL-MGTHP------GELLLSLSSSSGP 336
            +     A+E L Y+ V T    ++S+GV+  E++ +G  P       EL   L    G 
Sbjct: 202 RLPVRWMAIESLNYS-VYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKL--PQG- 257

Query: 337 KIMLIDILYQRLSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM 394
                     RL  P+N   ++         +   C R KP  RP+  +I   L      
Sbjct: 258 ---------YRLEKPLNCDDEVYD-------LMRQCWREKPYERPSFAQILVSLNRMLEE 301

Query: 395 KKGLKEISIPE 405
           +K     ++ E
Sbjct: 302 RKTYVNTTLYE 312

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 58.8 bits (143), Expect = 8e-10
 Identities = 48/217 (22%), Positives = 84/217 (38%), Gaps = 55/217 (25%)

Query: 145 FHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----------KLHHSETE-------DSAF 185
           F     +G G + +V  A EL   +  A+K           K+ +   E       D  F
Sbjct: 32  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 91

Query: 186 VV---YS---PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS------VAHA 233
            V   ++    + ++F   Y + G L   +R              +   +      +  A
Sbjct: 92  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRK---------IGSFDETCTRFYTAEIVSA 142

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA--GTYGYI 291
           L YLH      I+HRD+   NILLN ++   + DFGT ++L  +S      +  GT  Y+
Sbjct: 143 LEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYV 199

Query: 292 ALELV----YTMVVTEKCV-IYSFGVVALEVLMGTHP 323
           + EL+           K   +++ G +  +++ G  P
Sbjct: 200 SPELLTEKSAC-----KSSDLWALGCIIYQLVAGLPP 231

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 36/210 (17%)

Query: 130 DGKILYENLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF--- 185
           D  I   N    +++F +   +G G    VY+  +    K  ALK L  +  +       
Sbjct: 40  DYWIDGSNRDALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEI 99

Query: 186 ----------VVY------SPQCMFFIYEYMERGSLFCVLRDDDEAIEL-NWTRRM--NI 226
                     ++       +P  +  + E +  G LF      D  +E   ++ R   + 
Sbjct: 100 GVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELF------DRIVEKGYYSERDAADA 153

Query: 227 VKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTL 283
           VK +  A++YLH +    IVHRD+   N+L  +        +ADFG  ++++     +T+
Sbjct: 154 VKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTV 210

Query: 284 QAGTYGYIALELVYTMVVTEKCVIYSFGVV 313
             GT GY A E++       +  ++S G++
Sbjct: 211 -CGTPGYCAPEILRGCAYGPEVDMWSVGII 239

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 56/295 (18%), Positives = 96/295 (32%), Gaps = 82/295 (27%)

Query: 151 IGTGGYDSVYKAELPDGK------VVALKKL--HHSETEDSAF----------------- 185
           +G   +  VYK  L           VA+K L           F                 
Sbjct: 17  LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVC 76

Query: 186 ---VVYSPQCMFFIYEYMERGSLFCVLR-------------DDDEAIELNWTRRMNIVKS 229
              VV   Q +  I+ Y   G L   L              D      L     +++V  
Sbjct: 77  LLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQ 136

Query: 230 VAHALSYL--HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGT 287
           +A  + YL  HH     +VH+D+++ N+L+   L   ++D G  R  +V +++   +   
Sbjct: 137 IAAGMEYLSSHH-----VVHKDLATRNVLVYDKLNVKISDLGLFR--EVYAAD-YYKLLG 188

Query: 288 YGYI-----ALELVYTMVVTEKCVIYSFGVVALEVLM-GTHP------GELLLSLSSSSG 335
              +     A E +     +    I+S+GVV  EV   G  P       +++  + +   
Sbjct: 189 NSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNR-- 246

Query: 336 PKIMLIDILYQRLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                     Q L  P +    +  ++      + C    P  RP  + I   L 
Sbjct: 247 ----------QVLPCPDDCPAWVYALM------IECWNEFPSRRPRFKDIHSRLR 285

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 47/205 (22%)

Query: 142 TEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETED------------- 182
            E ++I   +G G +  V K  +    +  A+K        + +T               
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80

Query: 183 ----SAFVVY-SPQCMFFIYEYMERGSLFCVLRDDDEAIEL-NWTRRM--NIVKSVAHAL 234
                 F +       + + E    G LF      DE I+   ++      I+K V   +
Sbjct: 81  PNIMKLFEILEDSSSFYIVGELYTGGELF------DEIIKRKRFSEHDAARIIKQVFSGI 134

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTLQAGTYGYI 291
           +Y+H     +IVHRD+   NILL S  +     + DFG       ++  +    GT  YI
Sbjct: 135 TYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDR-IGTAYYI 190

Query: 292 ALELV---YTMVVTEKCVIYSFGVV 313
           A E++   Y     EKC ++S GV+
Sbjct: 191 APEVLRGTY----DEKCDVWSAGVI 211

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 38/164 (23%)

Query: 144 YFHIRYCIGTGGYDSVYKA---ELPDGKVVALKKLHHSETEDSA---------------- 184
           + +    +G G Y  VYKA   +  D K  ALK++  +    SA                
Sbjct: 22  FEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVI 81

Query: 185 -----FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMN--IVKSVAH----A 233
                F+ ++ + ++ +++Y E   L+ +++    +       ++   +VKS+ +     
Sbjct: 82  SLQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDG 140

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAF----VADFGTVRL 273
           + YLH +    ++HRD+   NIL+           +AD G  RL
Sbjct: 141 IHYLHANW---VLHRDLKPANILVMGEGPERGRVKIADMGFARL 181

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 65/192 (33%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKK-----------------------LHHS-------- 178
           IG G +  V+KA     G+ VALKK                       L H         
Sbjct: 25  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 84

Query: 179 ETEDSAFVVYSPQCMFFIYEYME---RGSLFCVLRDDDEAIELNWTRRMNIVKSVAH--- 232
               ++        ++ ++++ E    G L       +  ++      ++ +K V     
Sbjct: 85  CRTKASPYNRCKGSIYLVFDFCEHDLAGLL------SNVLVKFT----LSEIKRVMQMLL 134

Query: 233 -ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI 291
             L Y+H +    I+HRD+ + N+L+  +    +ADFG  R   +  +++  +       
Sbjct: 135 NGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNR------- 184

Query: 292 ALELVYT-MVVT 302
                YT  VVT
Sbjct: 185 -----YTNRVVT 191

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 34/202 (16%), Positives = 79/202 (39%), Gaps = 40/202 (19%)

Query: 142 TEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETED------------- 182
           ++ + ++  +G G +  V +      G   A K     KL   + +              
Sbjct: 28  SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQH 87

Query: 183 ----SAFVVY-SPQCMFFIYEYMERGSLFCVLRDDDEAIEL-NWTRRM--NIVKSVAHAL 234
                           + +++ +  G LF      ++ +    ++     + ++ +  ++
Sbjct: 88  PNIVRLHDSIQEESFHYLVFDLVTGGELF------EDIVAREFYSEADASHCIQQILESI 141

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTLQAGTYGYI 291
           +Y H +    IVHR++   N+LL S  +     +ADFG    ++   +     AGT GY+
Sbjct: 142 AYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGF-AGTPGYL 197

Query: 292 ALELVYTMVVTEKCVIYSFGVV 313
           + E++     ++   I++ GV+
Sbjct: 198 SPEVLKKDPYSKPVDIWACGVI 219

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 35/189 (18%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETEDSA-------------FVVY-SP 190
           +G G +    K       +  A+K        +++ E +A               V+   
Sbjct: 19  LGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHDQ 78

Query: 191 QCMFFIYEYMERGSLFCVLRDDDEAIEL-NWTRRM--NIVKSVAHALSYLHHDCTPSIVH 247
              F + E +  G LF      +   +  +++      I++ +  A+S++H      +VH
Sbjct: 79  LHTFLVMELLNGGELF------ERIKKKKHFSETEASYIMRKLVSAVSHMHDV---GVVH 129

Query: 248 RDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEK 304
           RD+   N+L     +     + DFG  RL   D+        T  Y A EL+      E 
Sbjct: 130 RDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDES 189

Query: 305 CVIYSFGVV 313
           C ++S GV+
Sbjct: 190 CDLWSLGVI 198

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 56.4 bits (137), Expect = 4e-09
 Identities = 37/158 (23%), Positives = 57/158 (36%), Gaps = 48/158 (30%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLH-HSETEDSAF----------------------- 185
           IG G Y +VYKA +   G  VALK +   +                              
Sbjct: 17  IGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNV 76

Query: 186 -----VVYSPQC-----MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH--- 232
                V  + +      +  ++E++++  L   L D      L        +K +     
Sbjct: 77  VRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYL-DKAPPPGLP----AETIKDLMRQFL 130

Query: 233 -ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG 269
             L +LH +C   IVHRD+   NIL+ S     +ADFG
Sbjct: 131 RGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFG 165

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 56.0 bits (136), Expect = 5e-09
 Identities = 34/202 (16%), Positives = 79/202 (39%), Gaps = 40/202 (19%)

Query: 142 TEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETED------------- 182
           ++ + ++  +G G +  V +      G   A K     KL   + +              
Sbjct: 5   SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQH 64

Query: 183 ----SAFVVY-SPQCMFFIYEYMERGSLFCVLRDDDEAIEL-NWTRRM--NIVKSVAHAL 234
                           + +++ +  G LF      ++ +    ++     + ++ +  ++
Sbjct: 65  PNIVRLHDSIQEESFHYLVFDLVTGGELF------EDIVAREFYSEADASHCIQQILESI 118

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTLQAGTYGYI 291
           +Y H +    IVHR++   N+LL S  +     +ADFG    ++   +     AGT GY+
Sbjct: 119 AYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGF-AGTPGYL 174

Query: 292 ALELVYTMVVTEKCVIYSFGVV 313
           + E++     ++   I++ GV+
Sbjct: 175 SPEVLKKDPYSKPVDIWACGVI 196

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 56.0 bits (136), Expect = 5e-09
 Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 39/202 (19%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFV------------ 186
           +  + F     +G+G +  V+   +   GK+ ALK +  S     + +            
Sbjct: 6   NIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKH 65

Query: 187 --------VY-SPQCMFFIYEYMERGSLFCVLRDDDEAIEL-NWTRRM--NIVKSVAHAL 234
                   +Y S    + + + +  G LF      D  +E   +T +    +++ V  A+
Sbjct: 66  ENIVTLEDIYESTTHYYLVMQLVSGGELF------DRILERGVYTEKDASLVIQQVLSAV 119

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTLQAGTYGYI 291
            YLH +    IVHRD+   N+L  +  E     + DFG  ++    +   +   GT GY+
Sbjct: 120 KYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKM--EQNGIMSTACGTPGYV 174

Query: 292 ALELVYTMVVTEKCVIYSFGVV 313
           A E++     ++    +S GV+
Sbjct: 175 APEVLAQKPYSKAVDCWSIGVI 196

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 47/199 (23%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALK--KLHHSETEDSAFV--------------------- 186
           +G G +  V +      G+  A K  K      +  A +                     
Sbjct: 37  LGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHE 96

Query: 187 VY-SPQCMFFIYEYMERGSLF--CVLRDDD-----EAIELNWTRRMNIVKSVAHALSYLH 238
           VY +   +  I EY   G +F  C+    +     + I L        +K +   + YLH
Sbjct: 97  VYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRL--------IKQILEGVYYLH 148

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTLQAGTYGYIALEL 295
            +   +IVH D+   NILL+S        + DFG  R +      R +  GT  Y+A E+
Sbjct: 149 QN---NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREI-MGTPEYLAPEI 204

Query: 296 VYTMVVTEKCVIYSFGVVA 314
           +    +T    +++ G++A
Sbjct: 205 LNYDPITTATDMWNIGIIA 223

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 46/207 (22%), Positives = 76/207 (36%), Gaps = 44/207 (21%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSA-------------- 184
              + F  +  +G+G +  V+   E   G    +K ++   ++                 
Sbjct: 19  TIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLD 78

Query: 185 -------FVVY-SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRM-------NIVKS 229
                  F V+     M+ + E  E G L       +  +      +         ++K 
Sbjct: 79  HPNIIKIFEVFEDYHNMYIVMETCEGGELL------ERIVSAQARGKALSEGYVAELMKQ 132

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTLQAG 286
           + +AL+Y H      +VH+D+   NIL           + DFG   L   D  +    AG
Sbjct: 133 MMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNA-AG 188

Query: 287 TYGYIALELVYTMVVTEKCVIYSFGVV 313
           T  Y+A E V+   VT KC I+S GVV
Sbjct: 189 TALYMAPE-VFKRDVTFKCDIWSAGVV 214

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 54/263 (20%), Positives = 88/263 (33%), Gaps = 75/263 (28%)

Query: 133 ILYENLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETEDSAFV 186
               +L++  + +H++  IG G Y  V  A E     + A+K     K+     +D   +
Sbjct: 16  FQGGSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERI 75

Query: 187 --------------------VY-SPQCMFFIYEYMERGSLF------------------- 206
                               VY   Q +  + E    G L                    
Sbjct: 76  KTEVRLMKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVV 135

Query: 207 ------CVLRDDDEAIELNWTRRM------------NIVKSVAHALSYLHHDCTPSIVHR 248
                 C   +++         R             NI++ +  AL YLH+     I HR
Sbjct: 136 KTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQ---GICHR 192

Query: 249 DISSNNILLNSNLEAFV--ADFGTVRLLDVDSSNRTLQ----AGTYGYIALELVYTMV-- 300
           DI   N L ++N    +   DFG  +     ++         AGT  ++A E++ T    
Sbjct: 193 DIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNES 252

Query: 301 VTEKCVIYSFGVVALEVLMGTHP 323
              KC  +S GV+   +LMG  P
Sbjct: 253 YGPKCDAWSAGVLLHLLLMGAVP 275

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 59/293 (20%), Positives = 102/293 (34%), Gaps = 78/293 (26%)

Query: 151 IGTGGYDSVYKAELPD------GKVVALKKL--HHSETEDSAF----------------- 185
           +G G +  V +A             VA+K L       E  A                  
Sbjct: 54  LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIV 113

Query: 186 ----VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRR-----------MNIVKSV 230
                      +  I EY   G L   LR     +E +               ++    V
Sbjct: 114 NLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQV 173

Query: 231 AHALSYL--HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY 288
           A  +++L   +      +HRD+++ N+LL +   A + DFG  R +  DS+         
Sbjct: 174 AQGMAFLASKN-----CIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYI---VKGN 225

Query: 289 GYI-----ALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDI 343
             +     A E ++  V T +  ++S+G++  E          + SL  +  P I++   
Sbjct: 226 ARLPVKWMAPESIFDCVYTVQSDVWSYGILLWE----------IFSLGLNPYPGILVNSK 275

Query: 344 LYQ------RLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            Y+      +++ P    K I  I+       AC   +P  RPT Q+I   L+
Sbjct: 276 FYKLVKDGYQMAQPAFAPKNIYSIM------QACWALEPTHRPTFQQICSFLQ 322

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 54/213 (25%), Positives = 84/213 (39%), Gaps = 43/213 (20%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPD-GKVVALKKLH-----------HSETE--------- 181
             F +   IG GG+  VY     D GK+ A+K L             +  E         
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 248

Query: 182 -DSAFVV---YS---PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNI-VKSVAHA 233
            D  F+V   Y+   P  + FI + M  G L   L       E      M      +   
Sbjct: 249 GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSE----ADMRFYAAEIILG 304

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA--GTYGYI 291
           L ++H+     +V+RD+   NILL+ +    ++D G    L  D S +   A  GT+GY+
Sbjct: 305 LEHMHNR---FVVYRDLKPANILLDEHGHVRISDLG----LACDFSKKKPHASVGTHGYM 357

Query: 292 ALELVYTMVVTEKCVIY-SFGVVALEVLMGTHP 323
           A E++   V  +    + S G +  ++L G  P
Sbjct: 358 APEVLQKGVAYDSSADWFSLGCMLFKLLRGHSP 390

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 40/205 (19%), Positives = 70/205 (34%), Gaps = 45/205 (21%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFV------------ 186
           D  +Y+ +   IG G +  V  A +       A KK+     ED                
Sbjct: 6   DINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDH 65

Query: 187 --------VY-SPQCMFFIYEYMERGSLFCVLRDDDEAIEL-NWTRRM--NIVKSVAHAL 234
                    +     ++ + E    G LF      +  +    +       I+K V  A+
Sbjct: 66  PNIIRLYETFEDNTDIYLVMELCTGGELF------ERVVHKRVFRESDAARIMKDVLSAV 119

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTLQAGTYGYI 291
           +Y H     ++ HRD+   N L  ++       + DFG           RT   GT  Y+
Sbjct: 120 AYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTK-VGTPYYV 175

Query: 292 ALELV---YTMVVTEKCVIYSFGVV 313
           + +++   Y      +C  +S GV+
Sbjct: 176 SPQVLEGLY----GPECDEWSAGVM 196

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 41/209 (19%), Positives = 81/209 (38%), Gaps = 35/209 (16%)

Query: 131 GKILYENLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFV--- 186
            + L+ N I  T+ + ++  IG G Y    +          A+K +  S+ + +  +   
Sbjct: 10  VQQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEIL 69

Query: 187 --------------VY-SPQCMFFIYEYMERGSLFCVLRDDDEAIEL-NWTRRM--NIVK 228
                         VY   + ++ + E M+ G L       D+ +    ++ R    ++ 
Sbjct: 70  LRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELL------DKILRQKFFSEREASAVLF 123

Query: 229 SVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF----VADFGTVRLLDVDSSNRTLQ 284
           ++   + YLH      +VHRD+  +NIL            + DFG  + L  ++      
Sbjct: 124 TITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTP 180

Query: 285 AGTYGYIALELVYTMVVTEKCVIYSFGVV 313
             T  ++A E++        C I+S GV+
Sbjct: 181 CYTANFVAPEVLERQGYDAACDIWSLGVL 209

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 62/295 (21%), Positives = 111/295 (37%), Gaps = 83/295 (28%)

Query: 151 IGTGGYDSVYKAELPDGK------VVALKKLH-HSETEDSAF------------------ 185
           +G G +  V+ AE  +        +VA+K L   +      F                  
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82

Query: 186 --VVYSPQCMFFIYEYMERGSLFCVLR-------------DDDEAIELNWTRRMNIVKSV 230
             V      +  ++EYM+ G L   LR                   EL  ++ ++I   +
Sbjct: 83  YGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQI 142

Query: 231 AHALSYL--HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY 288
           A  + YL   H      VHRD+++ N L+ +NL   + DFG  R  DV S++   + G +
Sbjct: 143 ASGMVYLASQH-----FVHRDLATRNCLVGANLLVKIGDFGMSR--DVYSTDYY-RVGGH 194

Query: 289 GYI-----ALE-LVYTMVVTEKCVIYSFGVVALEVL-MGTHP------GELLLSLSSSSG 335
             +       E ++Y    T +  ++SFGV+  E+   G  P       E++  ++    
Sbjct: 195 TMLPIRWMPPESIMYR-KFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQG-- 251

Query: 336 PKIMLIDILYQRLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                     + L  P    K + D++      L C + +P+ R  ++ I + L 
Sbjct: 252 ----------RVLERPRVCPKEVYDVM------LGCWQREPQQRLNIKEIYKILH 290

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 53/297 (17%), Positives = 92/297 (30%), Gaps = 83/297 (27%)

Query: 151 IGTGGYDSVYKAEL------PDGKVVALKKL--HHSETEDSAFV---------------- 186
           +G G +  V +A+          + VA+K L    + +E  A +                
Sbjct: 35  LGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 94

Query: 187 --------VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS--------- 229
                      P  +  I E+ + G+L   LR              ++ K          
Sbjct: 95  NLLGACTKPGGPLMV--IVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLIC 152

Query: 230 ----VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA 285
               VA  + +L    +   +HRD+++ NILL+      + DFG  R +  D        
Sbjct: 153 YSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV---R 206

Query: 286 GTYGYI-----ALELVYTMVVTEKCVIYSFGVVALEVLM-------GTHPGELLLSLSSS 333
                +     A E ++  V T +  ++SFGV+  E+         G    E        
Sbjct: 207 KGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKE 266

Query: 334 SGPKIMLIDILYQRLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                        R+  P      +   +      L C   +P  RPT   + + L 
Sbjct: 267 GT-----------RMRAPDYTTPEMYQTM------LDCWHGEPSQRPTFSELVEHLG 306

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 60/216 (27%)

Query: 142 TEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETEDSAFV--------- 186
            + + +   +G+G    V  A E    K VA+K     K       ++            
Sbjct: 9   RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEI 68

Query: 187 --------------VYSPQCMFFIYEYMERGSLFCVLRDD---------DEAIELNWTRR 223
                          +  +  + + E ME G LF    D                     
Sbjct: 69  LKKLNHPCIIKIKNFFDAEDYYIVLELMEGGELF----DKVVGNKRLKEATC-------- 116

Query: 224 MNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSN 280
                 +  A+ YLH +    I+HRD+   N+LL+S  E     + DFG  ++L   S  
Sbjct: 117 KLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLM 173

Query: 281 RTLQAGTYGYIALELVYTMVV---TEKCVIYSFGVV 313
           RTL  GT  Y+A E++ ++           +S GV+
Sbjct: 174 RTL-CGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVI 208

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 58/301 (19%), Positives = 103/301 (34%), Gaps = 91/301 (30%)

Query: 151 IGTGGYDSVYKAELPDGK--------VVALKKL--HHSETEDSAFV-------------- 186
           +G G +  V  AE              VA+K L    +E + S  V              
Sbjct: 89  LGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 148

Query: 187 ---------VYSPQCMFFIYEYMERGSLFCVLR-------------DDDEAIELNWTRRM 224
                       P  +  I EY  +G+L   LR             +     ++ +   +
Sbjct: 149 IINLLGACTQDGPLYV--IVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLV 206

Query: 225 NIVKSVAHALSYL--HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT 282
           +    +A  + YL          +HRD+++ N+L+  N    +ADFG  R ++     + 
Sbjct: 207 SCTYQLARGMEYLASQK-----CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYK- 260

Query: 283 LQAGTYGYI-----ALELVYTMVVTEKCVIYSFGVVALEVLM-------GTHPGELLLSL 330
               T G +     A E ++  V T +  ++SFGV+  E+         G    EL   L
Sbjct: 261 --KTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLL 318

Query: 331 SSSSGPKIMLIDILYQRLSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL 388
                           R+  P N   ++         +   C  + P  RPT +++ ++L
Sbjct: 319 KEG------------HRMDKPANCTNELYM-------MMRDCWHAVPSQRPTFKQLVEDL 359

Query: 389 E 389
           +
Sbjct: 360 D 360

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 48/157 (30%)

Query: 151 IGTGGYDSVYKA--ELPDGKVVALKKLHHSETEDSAF----------------------- 185
           IG G Y  V+KA      G+ VALK++   +T +                          
Sbjct: 19  IGEGAYGKVFKARDLKNGGRFVALKRVRV-QTGEEGMPLSTIREVAVLRHLETFEHPNVV 77

Query: 186 ----VVYSPQC-----MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH---- 232
               V    +      +  ++E++++  L   L D      +        +K +      
Sbjct: 78  RLFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYL-DKVPEPGVP----TETIKDMMFQLLR 131

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG 269
            L +LH      +VHRD+   NIL+ S+ +  +ADFG
Sbjct: 132 GLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFG 165

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 49/210 (23%), Positives = 78/210 (37%), Gaps = 42/210 (20%)

Query: 145 FHIRYCIGTGGYDSVYKAELPD-GKVVALKKL-----------HHSETE-------DSAF 185
           F     +G G +  V   +    G+  A+K L            H+ TE          F
Sbjct: 150 FEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPF 209

Query: 186 VV---YS---PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNI-VKSVAHALSYLH 238
           +    YS      + F+ EY   G LF  L  +    E     R       +  AL YLH
Sbjct: 210 LTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSE----DRARFYGAEIVSALDYLH 265

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ-AGTYGYIALELV- 296
            +   ++V+RD+   N++L+ +    + DFG  +   +          GT  Y+A E++ 
Sbjct: 266 SEK--NVVYRDLKLENLMLDKDGHIKITDFGLCK-EGIKDGATMKTFCGTPEYLAPEVLE 322

Query: 297 ---YTMVVTEKCVIYSFGVVALEVLMGTHP 323
              Y   V      +  GVV  E++ G  P
Sbjct: 323 DNDYGRAV----DWWGLGVVMYEMMCGRLP 348

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 47/210 (22%), Positives = 78/210 (37%), Gaps = 38/210 (18%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPD-GKVVALKKLH-----------HSETE-------DS 183
             F     +G GG+  V   ++   GK+ A KKL             +  E       +S
Sbjct: 184 NTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNS 243

Query: 184 AFVVY------SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL 237
            FVV       +   +  +   M  G L   +    +A      R +     +   L  L
Sbjct: 244 RFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAG-FPEARAVFYAAEICCGLEDL 302

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELV- 296
           H +    IV+RD+   NILL+ +    ++D G    +    + +    GT GY+A E+V 
Sbjct: 303 HRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGR-VGTVGYMAPEVVK 358

Query: 297 ---YTMVVTEKCVIYSFGVVALEVLMGTHP 323
              YT         ++ G +  E++ G  P
Sbjct: 359 NERYTFSPD----WWALGCLLYEMIAGQSP 384

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 41/221 (18%), Positives = 76/221 (34%), Gaps = 49/221 (22%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETEDSAFVVY----- 188
              +++ I   +G+G +  V K  E   G   A K     +   S        +      
Sbjct: 9   KVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSI 68

Query: 189 -----------------SPQCMFFIYEYMERGSLF--CVLRD---DDEAIELNWTRRMNI 226
                            +   +  I E +  G LF     ++   ++EA           
Sbjct: 69  LRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSF-------- 120

Query: 227 VKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF----VADFGTVRLLDVDSSNRT 282
           +K +   ++YLH      I H D+   NI+L           + DFG    ++     + 
Sbjct: 121 IKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKN 177

Query: 283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           +  GT  ++A E+V    +  +  ++S GV+   +L G  P
Sbjct: 178 I-FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 217

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 46/164 (28%)

Query: 151 IGTGGYDSVYKAEL-PDGKVVALKK-----------------LHH-----------SETE 181
           IG G +  VY+A+L   G++VA+KK                 L H           S  E
Sbjct: 62  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGE 121

Query: 182 DSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH----ALSYL 237
               V      +  + +Y+   +++ V R    A     T  +  VK   +    +L+Y+
Sbjct: 122 KKDEV-----YLNLVLDYVPE-TVYRVARHYSRA---KQTLPVIYVKLYMYQLFRSLAYI 172

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAF-VADFGTVRLLDVDSSN 280
           H   +  I HRDI   N+LL+ +     + DFG+ + L     N
Sbjct: 173 H---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPN 213

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 57/298 (19%), Positives = 104/298 (34%), Gaps = 85/298 (28%)

Query: 151 IGTGGYDSVYKAELPDGK--------VVALKKL--HHSETEDSAF--------------- 185
           +G G +  V  AE              VA+K L    +E + S                 
Sbjct: 43  LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102

Query: 186 ------VVYSPQCMFFIYEYMERGSLFCVLR-------------DDDEAIELNWTRRMNI 226
                        ++ I EY  +G+L   LR             +     ++ +   ++ 
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC 162

Query: 227 VKSVAHALSYL--HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ 284
              +A  + YL          +HRD+++ N+L+  N    +ADFG  R ++     +   
Sbjct: 163 TYQLARGMEYLASQK-----CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYK--- 214

Query: 285 AGTYGYI-----ALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP------GELLLSLSS 332
             T G +     A E ++  V T +  ++SFGV+  E+  +G  P       EL   L  
Sbjct: 215 KTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKE 274

Query: 333 SSGPKIMLIDILYQRLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                         R+  P N    +  ++        C  + P  RPT +++ ++L+
Sbjct: 275 G------------HRMDKPANCTNELYMMM------RDCWHAVPSQRPTFKQLVEDLD 314

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 42/222 (18%), Positives = 72/222 (32%), Gaps = 59/222 (26%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVA--------------------LKKLHHS 178
           +  E + I   +G G +  V++  E    K                       L    H 
Sbjct: 2   ELYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHR 61

Query: 179 ---------ETEDSAFVVYSPQCMFFIYEYMERGSLF--CVLRDD----DEAIELNWTRR 223
                    E+ +          +  I+E++    +F             E +       
Sbjct: 62  NILHLHESFESMEE---------LVMIFEFISGLDIFERINTSAFELNEREIV------- 105

Query: 224 MNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFV--ADFGTVRLLDVDSSNR 281
            + V  V  AL +LH     +I H DI   NI+  +   + +   +FG  R L    + R
Sbjct: 106 -SYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFR 161

Query: 282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
            L      Y A E+    VV+    ++S G +   +L G +P
Sbjct: 162 LL-FTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINP 202

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 43/213 (20%), Positives = 79/213 (37%), Gaps = 51/213 (23%)

Query: 142 TEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETEDSAFV--------- 186
            E +  +  +G G    V +    P  K  A+K            E+   +         
Sbjct: 16  YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVD 75

Query: 187 ----------------VY-SPQCMFFIYEYMERGSLFCVLRDDDEAIEL-NWTRRM--NI 226
                            Y +    F +++ M++G LF      D   E    + +    I
Sbjct: 76  ILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELF------DYLTEKVTLSEKETRKI 129

Query: 227 VKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAG 286
           ++++   +  LH     +IVHRD+   NILL+ ++   + DFG    LD     R +  G
Sbjct: 130 MRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREV-CG 185

Query: 287 TYGYIALELVYTMVV------TEKCVIYSFGVV 313
           T  Y+A E++   +        ++  ++S GV+
Sbjct: 186 TPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVI 218

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 60/295 (20%), Positives = 100/295 (33%), Gaps = 78/295 (26%)

Query: 151 IGTGGYDSVYKAELPDGK------VVALKKL--HHSETEDSAF----------------- 185
           +G G +  V +A             VA+K L      TE  A                  
Sbjct: 31  LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIV 90

Query: 186 ----VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS------------ 229
                         I EY   G L   LR   ++   + T    +               
Sbjct: 91  NLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSF 150

Query: 230 ---VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAG 286
              VA  +++L    + + +HRD+++ NILL       + DFG  R +  DS+       
Sbjct: 151 SYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYV---VK 204

Query: 287 TYGYI-----ALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLI 341
               +     A E ++  V T +  ++S+G+   E+           SL SS  P + + 
Sbjct: 205 GNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL----------FSLGSSPYPGMPVD 254

Query: 342 DILYQ------RLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              Y+      R+  P +    + DI+        C  + P  RPT ++I Q +E
Sbjct: 255 SKFYKMIKEGFRMLSPEHAPAEMYDIM------KTCWDADPLKRPTFKQIVQLIE 303

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 39/212 (18%), Positives = 73/212 (34%), Gaps = 49/212 (23%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETEDSAFVVY----- 188
              +++ I   +G+G +  V K  E   G   A K     +   S    S   +      
Sbjct: 9   KVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSI 68

Query: 189 -----------------SPQCMFFIYEYMERGSLF--CVLRD---DDEAIELNWTRRMNI 226
                            +   +  I E +  G LF     ++   ++EA           
Sbjct: 69  LRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSF-------- 120

Query: 227 VKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF----VADFGTVRLLDVDSSNRT 282
           +K +   ++YLH      I H D+   NI+L           + DFG    ++     + 
Sbjct: 121 IKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKN 177

Query: 283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVA 314
           +  GT  ++A E+V    +  +  ++S GV+ 
Sbjct: 178 I-FGTPEFVAPEIVNYEPLGLEADMWSIGVIT 208

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 42/205 (20%), Positives = 70/205 (34%), Gaps = 48/205 (23%)

Query: 143 EYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSET--------------------- 180
           +Y      +G G    V +       +  ALK L                          
Sbjct: 62  DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIV 121

Query: 181 ---EDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRM------NIVKSVA 231
              E+        +C+  + E ++ G LF         I+    +         I+KS+ 
Sbjct: 122 DVYENL---YAGRKCLLIVMECLDGGELF-------SRIQDRGDQAFTEREASEIMKSIG 171

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTLQAGTY 288
            A+ YLH     +I HRD+   N+L  S        + DFG  +     +S  T    T 
Sbjct: 172 EAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTP-CYTP 227

Query: 289 GYIALELVYTMVVTEKCVIYSFGVV 313
            Y+A E++      + C ++S GV+
Sbjct: 228 YYVAPEVLGPEKYDKSCDMWSLGVI 252

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 39/212 (18%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPD-GKVVALKKLH-----------HSETE-------DS 183
           ++F     +G GG+  V+  ++   GK+ A KKL+            +  E        S
Sbjct: 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHS 244

Query: 184 AFVV---YS---PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS-VAHALSY 236
            F+V   Y+      +  +   M  G +   + + DE        R     + +   L +
Sbjct: 245 RFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEH 304

Query: 237 LHHDCTPSIVHRDISSNNILLNSNLEAFVADFG-TVRLLDVDSSNRTLQAGTYGYIALEL 295
           LH     +I++RD+   N+LL+ +    ++D G  V L    +  +   AGT G++A EL
Sbjct: 305 LHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGY-AGTPGFMAPEL 360

Query: 296 V----YTMVVTEKCVIYSFGVVALEVLMGTHP 323
           +    Y   V      ++ GV   E++    P
Sbjct: 361 LLGEEYDFSVD----YFALGVTLYEMIAARGP 388

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 54/294 (18%), Positives = 106/294 (36%), Gaps = 77/294 (26%)

Query: 151 IGTGGYDSVYKAELPDGK--------VVALKKL--HHSETEDSAF--------------- 185
           +G G +  V  AE              VA+K L    +E + S                 
Sbjct: 77  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 136

Query: 186 ------VVYSPQCMFFIYEYMERGSLFCVLR-------------DDDEAIELNWTRRMNI 226
                        ++ I EY  +G+L   L+               +   +L+    ++ 
Sbjct: 137 IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSC 196

Query: 227 VKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAG 286
              VA  + YL    +   +HRD+++ N+L+  +    +ADFG  R +      +     
Sbjct: 197 AYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYK---KT 250

Query: 287 TYGYI-----ALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLI 341
           T G +     A E ++  + T +  ++SFGV+  E+           +L  S  P + + 
Sbjct: 251 TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEI----------FTLGGSPYPGVPVE 300

Query: 342 DILYQ-----RLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           ++        R+  P N    +  ++        C  + P  RPT +++ ++L+
Sbjct: 301 ELFKLLKEGHRMDKPSNCTNELYMMM------RDCWHAVPSQRPTFKQLVEDLD 348

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 45/214 (21%), Positives = 75/214 (35%), Gaps = 54/214 (25%)

Query: 145 FHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------HSETE-------DSAF 185
           F     +GTG +  V   +    G   A+K L            H+  E       +  F
Sbjct: 43  FDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPF 102

Query: 186 VVY------SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS------VAHA 233
           +V           ++ + EY+  G +F  LR            R +   +      +   
Sbjct: 103 LVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRI---------GRFSEPHARFYAAQIVLT 153

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIAL 293
             YLH      +++RD+   N+L++      V DFG  +   V     TL  GT   +A 
Sbjct: 154 FEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAK--RVKGRTWTL-CGTPEALAP 207

Query: 294 ELV----YTMVVTEKCVIYSFGVVALEVLMGTHP 323
           E++    Y   V      ++ GV+  E+  G  P
Sbjct: 208 EIILSKGYNKAVD----WWALGVLIYEMAAGYPP 237

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 40/212 (18%), Positives = 76/212 (35%), Gaps = 49/212 (23%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETEDSAFVVY----- 188
              +++ +   +G+G +  V K  +   GK  A K     +L  S    S   +      
Sbjct: 2   MVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNI 61

Query: 189 -----------------SPQCMFFIYEYMERGSLF--CVLRD---DDEAIELNWTRRMNI 226
                            +   +  I E +  G LF     ++   +DEA +         
Sbjct: 62  LREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQF-------- 113

Query: 227 VKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF----VADFGTVRLLDVDSSNRT 282
           +K +   + YLH      I H D+   NI+L           + DFG    ++  +  + 
Sbjct: 114 LKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKN 170

Query: 283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVA 314
           +  GT  ++A E+V    +  +  ++S GV+ 
Sbjct: 171 I-FGTPEFVAPEIVNYEPLGLEADMWSIGVIT 201

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 41/212 (19%), Positives = 75/212 (35%), Gaps = 49/212 (23%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETEDSAFVVY----- 188
           +  +Y+     +G+G +  V K  E   G   A K     +   S    S   +      
Sbjct: 8   NVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSI 67

Query: 189 -----------------SPQCMFFIYEYMERGSLF--CVLRD---DDEAIELNWTRRMNI 226
                            +   +  I E +  G LF     ++   ++EA E         
Sbjct: 68  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEF-------- 119

Query: 227 VKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAF----VADFGTVRLLDVDSSNRT 282
           +K + + + YLH      I H D+   NI+L           + DFG    +D  +  + 
Sbjct: 120 LKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKN 176

Query: 283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVA 314
           +  GT  ++A E+V    +  +  ++S GV+ 
Sbjct: 177 I-FGTPEFVAPEIVNYEPLGLEADMWSIGVIT 207

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 39/208 (18%), Positives = 68/208 (32%), Gaps = 58/208 (27%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAFV---------------------VY 188
           +G G +  V     L   +  A+K +        + V                      +
Sbjct: 21  LGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFF 80

Query: 189 -SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRM-------NIVKSVAHALSYLHHD 240
                 + ++E M  GS+          I     RR         +V+ VA AL +LH  
Sbjct: 81  EEEDRFYLVFEKMRGGSIL-------SHIH---KRRHFNELEASVVVQDVASALDFLH-- 128

Query: 241 CTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTLQ-------AGTYGY 290
               I HRD+   NIL     +     + DF     + ++     +         G+  Y
Sbjct: 129 -NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEY 187

Query: 291 IALELVYTMVVT-----EKCVIYSFGVV 313
           +A E+V           ++C ++S GV+
Sbjct: 188 MAPEVVEAFSEEASIYDKRCDLWSLGVI 215

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 45/163 (27%)

Query: 151 IGTGGYDSVYKAELPDGKVVALKK-----------------LHH-----------SETED 182
           IG G +  V++A+L +   VA+KK                 + H           S  + 
Sbjct: 48  IGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDK 107

Query: 183 SAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH----ALSYLH 238
              V      +  + EY+   +++   R   +      T  M ++K   +    +L+Y+H
Sbjct: 108 KDEV-----FLNLVLEYVPE-TVYRASRHYAKL---KQTMPMLLIKLYMYQLLRSLAYIH 158

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAF-VADFGTVRLLDVDSSN 280
              +  I HRDI   N+LL+       + DFG+ ++L     N
Sbjct: 159 ---SIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPN 198

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 62/304 (20%), Positives = 106/304 (34%), Gaps = 92/304 (30%)

Query: 151 IGTGGYDSVYKAELPDGK------VVALKKL--HHSETEDSAF----------------- 185
           IG G +  V++A  P         +VA+K L    S    + F                 
Sbjct: 55  IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVK 114

Query: 186 ---VVYSPQCMFFIYEYMERGSLFCVLR---------------------DDDEAIELNWT 221
              V    + M  ++EYM  G L   LR                            L+  
Sbjct: 115 LLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCA 174

Query: 222 RRMNIVKSVAHALSYL--HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS 279
            ++ I + VA  ++YL          VHRD+++ N L+  N+   +ADFG  R  ++ S+
Sbjct: 175 EQLCIARQVAAGMAYLSERK-----FVHRDLATRNCLVGENMVVKIADFGLSR--NIYSA 227

Query: 280 NRTLQAGTYGYI-----ALE-LVYTMVVTEKCVIYSFGVVALEVL-MGTHP------GEL 326
           +   +A     I       E + Y    T +  ++++GVV  E+   G  P       E+
Sbjct: 228 D-YYKADGNDAIPIRWMPPESIFYN-RYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEV 285

Query: 327 LLSLSSSSGPKIMLIDILYQRLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRIS 385
           +  +    G            L+ P N    + +++        C    P  RP+   I 
Sbjct: 286 IYYV--RDG----------NILACPENCPLELYNLM------RLCWSKLPADRPSFCSIH 327

Query: 386 QELE 389
           + L+
Sbjct: 328 RILQ 331

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 44/199 (22%), Positives = 72/199 (36%), Gaps = 53/199 (26%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALK------------KLHHSET------------EDSAF 185
           +G G    V +      G+  ALK              H   +            E+   
Sbjct: 37  LGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILDVYENMH- 95

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAI----ELNWTRRM--NIVKSVAHALSYLHH 239
             +  +C+  I E ME G LF         I    +  +T R    I++ +  A+ +LH 
Sbjct: 96  --HGKRCLLIIMECMEGGELF-------SRIQERGDQAFTEREAAEIMRDIGTAIQFLHS 146

Query: 240 DCTPSIVHRDISSNNILLNSNLEAF---VADFGTVRLLDVDSSNRTLQ--AGTYGYIALE 294
               +I HRD+   N+L  S  +     + DFG  +          LQ    T  Y+A E
Sbjct: 147 H---NIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETT----QNALQTPCYTPYYVAPE 199

Query: 295 LVYTMVVTEKCVIYSFGVV 313
           ++      + C ++S GV+
Sbjct: 200 VLGPEKYDKSCDMWSLGVI 218

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 64/304 (21%), Positives = 106/304 (34%), Gaps = 92/304 (30%)

Query: 151 IGTGGYDSVYKAELPDGK------VVALKKL--HHSETEDSAF----------------- 185
           +G G +  V KA     K       VA+K L  + S +E                     
Sbjct: 31  LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK 90

Query: 186 ---VVYSPQCMFFIYEYMERGSLFCVLR---------------------DDDEAIELNWT 221
                     +  I EY + GSL   LR                     D  +   L   
Sbjct: 91  LYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMG 150

Query: 222 RRMNIVKSVAHALSYL--HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS 279
             ++    ++  + YL         +VHRD+++ NIL+    +  ++DFG  R +  + S
Sbjct: 151 DLISFAWQISQGMQYLAEMK-----LVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDS 205

Query: 280 NRTLQAGTYGYI-----ALE-LVYTMVVTEKCVIYSFGVVALEVLM-------GTHPGEL 326
                  + G I     A+E L    + T +  ++SFGV+  E++        G  P  L
Sbjct: 206 YV---KRSQGRIPVKWMAIESLFDH-IYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERL 261

Query: 327 LLSLSSSSGPKIMLIDILYQRLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRIS 385
              L   +G           R+  P N  + +  ++      L C + +P  RP    IS
Sbjct: 262 FNLL--KTG----------HRMERPDNCSEEMYRLM------LQCWKQEPDKRPVFADIS 303

Query: 386 QELE 389
           ++LE
Sbjct: 304 KDLE 307

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 34/172 (19%)

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYG 289
           VA  + +L    +   +HRD+++ NILL+      + DFG  R +  D            
Sbjct: 202 VAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV---RKGDA 255

Query: 290 YI-----ALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDIL 344
            +     A E ++  V T +  ++SFGV+  E          + SL +S  P + + +  
Sbjct: 256 RLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE----------IFSLGASPYPGVKIDEEF 305

Query: 345 YQ------RLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            +      R+  P      +   +      L C   +P  RPT   + + L 
Sbjct: 306 CRRLKEGTRMRAPDYTTPEMYQTM------LDCWHGEPSQRPTFSELVEHLG 351

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 49.9 bits (118), Expect = 7e-07
 Identities = 17/144 (11%), Positives = 42/144 (29%), Gaps = 13/144 (9%)

Query: 179 ETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
            + +     +    +F + E+   G       +       +     +I+  +  +L+   
Sbjct: 123 GSANDRPDFFKDDQLFIVLEFEFGGIDL----EQMRTKLSSLATAKSILHQLTASLAVAE 178

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
                   HRD+   N+LL       +      +   + S    +    Y    LE    
Sbjct: 179 ASL--RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLE---- 232

Query: 299 MVVTEKCVIYSFGVVALEVLMGTH 322
               +  V++    +  ++  G  
Sbjct: 233 ---RDGIVVFCDVSMDEDLFTGDG 253

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 53/205 (25%), Positives = 80/205 (39%), Gaps = 54/205 (26%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALK-----KLHHSETEDSAFV------------------ 186
           IG G    V +      G   A+K         S  +                       
Sbjct: 102 IGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPH 161

Query: 187 ------VY-SPQCMFFIYEYMERGSLFCVLRDDDEAIELNW-----TRRMNIVKSVAHAL 234
                  Y S   MF +++ M +G LF      D   E        TR   I++S+  A+
Sbjct: 162 IITLIDSYESSSFMFLVFDLMRKGELF------DYLTEKVALSEKETRS--IMRSLLEAV 213

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE 294
           S+LH +   +IVHRD+   NILL+ N++  ++DFG    L+     R L  GT GY+A E
Sbjct: 214 SFLHAN---NIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLREL-CGTPGYLAPE 269

Query: 295 -LVYTMVVTEK-----CVIYSFGVV 313
            L  +M  T         +++ GV+
Sbjct: 270 ILKCSMDETHPGYGKEVDLWACGVI 294

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 42/226 (18%), Positives = 73/226 (32%), Gaps = 63/226 (27%)

Query: 142 TEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF--------------- 185
            + + IR+ IGTG Y  V +A +  + +VVA+KK+     ED                  
Sbjct: 52  PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKIL-RVFEDLIDCKRILREIAILNRLN 110

Query: 186 ---------VVYSPQCMFF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
                    +V       F     + E  +               +     R  +  +  
Sbjct: 111 HDHVVKVLDIVIPKDVEKFDELYVVLEIAD--------------SDFKKLFRTPVYLTEL 156

Query: 232 H----------ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR 281
           H           + Y+H   +  I+HRD+   N L+N +    V DFG  R +D   +  
Sbjct: 157 HIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGN 213

Query: 282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVV-----ALEVLMGTH 322
           +    +     + LV            +  VV     A E+++   
Sbjct: 214 SQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQE 259

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 46/167 (27%)

Query: 151 IGTGGYDSVYKA-ELPDGKVVALKK--------------------LHH-----------S 178
            G G + +V    E   G  VA+KK                    LHH           +
Sbjct: 31  AGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYT 90

Query: 179 ETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS----VAHAL 234
             E     +Y    +  + EY+   +L    R+              ++K     +  ++
Sbjct: 91  LGERDRRDIY----LNVVMEYVPD-TLHRCCRN---YYRRQVAPPPILIKVFLFQLIRSI 142

Query: 235 SYLHHDCTPSIVHRDISSNNILLN-SNLEAFVADFGTVRLLDVDSSN 280
             LH   + ++ HRDI  +N+L+N ++    + DFG+ + L     N
Sbjct: 143 GCLHLP-SVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPN 188

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 52/302 (17%), Positives = 95/302 (31%), Gaps = 87/302 (28%)

Query: 151 IGTGGYDSVYKAELPDGK------VVALKKL--HHSETEDSAF----------------- 185
           +G+G +  V  A             VA+K L      +E  A                  
Sbjct: 53  LGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIV 112

Query: 186 ----VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS------------ 229
                      ++ I+EY   G L   LR   E    +     N  +             
Sbjct: 113 NLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFE 172

Query: 230 --------VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR 281
                   VA  + +L      S VHRD+++ N+L+       + DFG  R +  DS+  
Sbjct: 173 DLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYV 229

Query: 282 TLQAGTYGYI-----ALELVYTMVVTEKCVIYSFGVVALEVL-MGTHP-------GELLL 328
                    +     A E ++  + T K  ++S+G++  E+  +G +P            
Sbjct: 230 ---VRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYK 286

Query: 329 SLSSSSGPKIMLIDILYQRLSPPIN-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE 387
            +   +G           ++  P    + I  I+       +C     + RP+   ++  
Sbjct: 287 LI--QNG----------FKMDQPFYATEEIYIIM------QSCWAFDSRKRPSFPNLTSF 328

Query: 388 LE 389
           L 
Sbjct: 329 LG 330

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 35/143 (24%)

Query: 169 VVALKKLHH-----------SETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDD----D 213
           +  LKKL H              ED          ++ ++E + +G +  V        D
Sbjct: 87  IAILKKLDHPNVVKLVEVLDDPNEDH---------LYMVFELVNQGPVMEVPTLKPLSED 137

Query: 214 EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL 273
           +A      R     + +   + YLH+     I+HRDI  +N+L+  +    +ADFG    
Sbjct: 138 QA------RF--YFQDLIKGIEYLHYQ---KIIHRDIKPSNLLVGEDGHIKIADFGVSNE 186

Query: 274 LDVDSSNRTLQAGTYGYIALELV 296
                +  +   GT  ++A E +
Sbjct: 187 FKGSDALLSNTVGTPAFMAPESL 209

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 43/182 (23%)

Query: 134 LYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF-------- 185
           L   L      + ++  I +G Y +V      +G  VA+K++ ++ ++            
Sbjct: 13  LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFL 72

Query: 186 ------------------------VVYSPQCMFF-----IYEYMERGSLFCVLRDDDEAI 216
                                   +    +         + E M    L  V+ D    I
Sbjct: 73  CKRVLREIRLLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMRT-DLAQVIHDQR--I 129

Query: 217 ELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV 276
            ++       +  +   L  LH      +VHRD+   NILL  N +  + DF   R    
Sbjct: 130 VISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGNILLADNNDITICDFNLAREDTA 186

Query: 277 DS 278
           D+
Sbjct: 187 DA 188

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 46/212 (21%)

Query: 145 FHI--RY----CIGTGGYDSVYKA-ELPDGKVVALKK--------------------LHH 177
           F +  RY     IG+G    V  A +    + VA+KK                    +  
Sbjct: 21  FTVLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKC 80

Query: 178 SETED--SAFVVYSPQC-------MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVK 228
              ++      V++PQ        ++ + E M+  +L  V++ +     L+  R   ++ 
Sbjct: 81  VNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMD-ANLCQVIQME-----LDHERMSYLLY 134

Query: 229 SVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY 288
            +   + +LH   +  I+HRD+  +NI++ S+    + DFG  R     S   T    T 
Sbjct: 135 QMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG-TSFMMTPYVVTR 190

Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVLMG 320
            Y A E++  M   E   I+S G +  E++ G
Sbjct: 191 YYRAPEVILGMGYKENVDIWSVGCIMGEMIKG 222

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 20/145 (13%)

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLR-----DDDEAIELNWTRRMNIVKSVAHALSYLHHD 240
           V+ + + ++ I EY   G +F  L       + EA      R     + +  A+ Y H  
Sbjct: 82  VIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEA------RS--KFRQIVSAVQYCHQK 133

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMV 300
               IVHRD+ + N+LL++++   +ADFG      V         G   Y A EL     
Sbjct: 134 R---IVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDA-FCGAPPYAAPELFQGKK 189

Query: 301 VTEKCV-IYSFGVVALEVLM-GTHP 323
                V ++S GV+ L  L+ G+ P
Sbjct: 190 YDGPEVDVWSLGVI-LYTLVSGSLP 213

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 40/209 (19%)

Query: 142 TEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKK--------------------LHHSET 180
            + +     IG+G    V  A +    + VA+KK                    +     
Sbjct: 61  LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNH 120

Query: 181 ED--SAFVVYSPQCMF-------FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           ++  S   V++PQ           + E M+  +L  V++ +     L+  R   ++  + 
Sbjct: 121 KNIISLLNVFTPQKTLEEFQDVYLVMELMD-ANLCQVIQME-----LDHERMSYLLYQML 174

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYI 291
             + +LH   +  I+HRD+  +NI++ S+    + DFG  R     S   T    T  Y 
Sbjct: 175 CGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAG-TSFMMTPYVVTRYYR 230

Query: 292 ALELVYTMVVTEKCVIYSFGVVALEVLMG 320
           A E++  M   E   I+S G +  E++  
Sbjct: 231 APEVILGMGYKENVDIWSVGCIMGEMVRH 259

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 34/156 (21%), Positives = 52/156 (33%), Gaps = 48/156 (30%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALK-----KLHHSETEDSAF------------------- 185
           +G+GG+ SVY    + D   VA+K     ++       +                     
Sbjct: 51  LGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGV 110

Query: 186 -----VVYSPQCMFFIYEYME-RGSLF--CVLR---DDDEAIELNWTRRMNIVKSVAHAL 234
                    P     I E  E    LF     R    ++ A      R       V  A+
Sbjct: 111 IRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELA------RS--FFWQVLEAV 162

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSN-LEAFVADFG 269
            + H+     ++HRDI   NIL++ N  E  + DFG
Sbjct: 163 RHCHNC---GVLHRDIKDENILIDLNRGELKLIDFG 195

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 48/204 (23%), Positives = 75/204 (36%), Gaps = 43/204 (21%)

Query: 151 IGTGGYDSVYKAELPD-GKVVALKKLH-----------HSETE-------DSAFVV---Y 188
           +G G +  V        G+  A+K L            H+ TE          F+    Y
Sbjct: 13  LGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKY 72

Query: 189 S---PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS-VAHALSYLHHDCTPS 244
           +      + F+ EY   G LF  L  +    E     R     + +  AL YLH      
Sbjct: 73  AFQTHDRLCFVMEYANGGELFFHLSRERVFTE----ERARFYGAEIVSALEYLHSR---D 125

Query: 245 IVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ-AGTYGYIALELV----YTM 299
           +V+RDI   N++L+ +    + DFG  +   +          GT  Y+A E++    Y  
Sbjct: 126 VVYRDIKLENLMLDKDGHIKITDFGLCK-EGISDGATMKTFCGTPEYLAPEVLEDNDYGR 184

Query: 300 VVTEKCVIYSFGVVALEVLMGTHP 323
            V      +  GVV  E++ G  P
Sbjct: 185 AV----DWWGLGVVMYEMMCGRLP 204

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 7e-06
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 15  SGVVEEEPSSPSFLKS-DMSFNNLDGEIPTY--LRDNPPKSFVGNKGLCG 61
            G + +  S+ + L   D+S NNL G IP        PP  F+ N GLCG
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 36/185 (19%), Positives = 62/185 (33%), Gaps = 62/185 (33%)

Query: 142 TEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF--------------- 185
            + + I++ IG G Y  VY A +    K VA+KK++        F               
Sbjct: 25  PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVN------RMFEDLIDCKRILREITI 78

Query: 186 --------------VVYSPQCMFF--IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS 229
                         ++     + F  +Y  +E       + D D    L    +  I  +
Sbjct: 79  LNRLKSDYIIRLYDLIIPDDLLKFDELYIVLE-------IADSD----LKKLFKTPIFLT 127

Query: 230 VAH----------ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS 279
             H            +++H      I+HRD+   N LLN +    V DFG  R ++ +  
Sbjct: 128 EEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKD 184

Query: 280 NRTLQ 284
              + 
Sbjct: 185 TNIVN 189

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 47/158 (29%)

Query: 143 EYFHIRYCI----GTGGYDSVYKAE-LPDGKVVALK--------------------KLHH 177
           + F+ RY +    G G + +V+ +  +   K VA+K                     + +
Sbjct: 33  DLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRN 92

Query: 178 SETEDS----------AFVVYSP----QCMFFIYEYMERGSLFCVLRD-DDEAIELNWTR 222
           S+  D            F +        CM  ++E +    L   +   + + + L   +
Sbjct: 93  SDPNDPNREMVVQLLDDFKISGVNGTHICM--VFEVL-GHHLLKWIIKSNYQGLPLPCVK 149

Query: 223 RMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN 260
           +  I++ V   L YLH  C   I+H DI   NILL+ N
Sbjct: 150 K--IIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVN 183

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 42/176 (23%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALK-----KLHHSETEDSAF------------------- 185
           +G G +  V   E    G  VA+K     K+   +                         
Sbjct: 19  LGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQ 78

Query: 186 VVYSPQCMFFIYEYMERGSLF--CVLR---DDDEAIELNWTRRMNIVKSVAHALSYLHHD 240
           V+ +P   F + EY+  G LF         ++ EA      RR  + + +  A+ Y H  
Sbjct: 79  VISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEA------RR--LFQQILSAVDYCHRH 130

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELV 296
               +VHRD+   N+LL++++ A +ADFG   ++      RT   G+  Y A E++
Sbjct: 131 ---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRT-SCGSPNYAAPEVI 182

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 52/222 (23%), Positives = 85/222 (38%), Gaps = 65/222 (29%)

Query: 145 FHIRYCIGTGGYDSVYKAELP----DGKVVALKKLH----------HSETE-------DS 183
           F +   +G G +  V+  +        ++ A+K L            ++ E       + 
Sbjct: 26  FELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNH 85

Query: 184 AFVV---YS---PQCMFFIYEYMERGSLFCVLRDD---DE------AIELNWTRRMNIVK 228
            F+V   Y+      ++ I +++  G LF  L  +    E        EL          
Sbjct: 86  PFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAEL---------- 135

Query: 229 SVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL--LDVDSSNRTLQ-A 285
             A AL +LH      I++RD+   NILL+      + DFG   L    +D   +     
Sbjct: 136 --ALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFG---LSKESIDHEKKAYSFC 187

Query: 286 GTYGYIALELV----YTMVVTEKCVIYSFGVVALEVLMGTHP 323
           GT  Y+A E+V    +T         +SFGV+  E+L GT P
Sbjct: 188 GTVEYMAPEVVNRRGHTQSAD----WWSFGVLMFEMLTGTLP 225

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 50/158 (31%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALK-----KLHHSETEDSAFVVY---------------- 188
           +G GG+ +V+    L D   VA+K     ++        +                    
Sbjct: 39  LGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHP 98

Query: 189 ----------SPQCMFFIYEYMERGS-LF--CVLR---DDDEAIELNWTRRMNIVKSVAH 232
                     + +    + E       LF     +    +  +      R       V  
Sbjct: 99  GVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPS------RC--FFGQVVA 150

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNS-NLEAFVADFG 269
           A+ + H      +VHRDI   NIL++     A + DFG
Sbjct: 151 AIQHCHSR---GVVHRDIKDENILIDLRRGCAKLIDFG 185

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 35/182 (19%), Positives = 58/182 (31%), Gaps = 48/182 (26%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALK-----KLHHSETEDSAF------------------- 185
           +G+G +  V+ A      K V +K     K+      +                      
Sbjct: 32  LGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANI 91

Query: 186 -----VVYSPQCMFFIYEYMERGS-LF--CVLR---DDDEAIELNWTRRMNIVKSVAHAL 234
                +  +      + E    G  LF         D+  A          I + +  A+
Sbjct: 92  IKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLA------SY--IFRQLVSAV 143

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE 294
            YL       I+HRDI   NI++  +    + DFG+   L+      T   GT  Y A E
Sbjct: 144 GYLRLKD---IIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTF-CGTIEYCAPE 199

Query: 295 LV 296
           ++
Sbjct: 200 VL 201

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 36/167 (21%)

Query: 142 TEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSA------------F--- 185
              +     IG G Y  V  A +  +   VA+KK+   E +               F   
Sbjct: 26  GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHE 85

Query: 186 -------VVYSPQCMFF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHA 233
                  ++ +P          + + ME   L+ +L+       L+       +  +   
Sbjct: 86  NIIGINDIIRAPTIEQMKDVYIVQDLME-TDLYKLLKTQH----LSNDHICYFLYQILRG 140

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN 280
           L Y+H   + +++HRD+  +N+LLN+  +  + DFG  R+ D D  +
Sbjct: 141 LKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDH 184

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 42/181 (23%)

Query: 145 FHI--RY----CIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSA------------F 185
           ++I   +     +G G Y  V  A   P G++VA+KK+   +    A            F
Sbjct: 7   YNISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHF 66

Query: 186 ----------VVYSPQCMFF-----IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
                     +        F     I E M+   L  V+        L+       +   
Sbjct: 67  KHENIITIFNIQRPDSFENFNEVYIIQELMQT-DLHRVISTQM----LSDDHIQYFIYQT 121

Query: 231 AHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGY 290
             A+  LH     +++HRD+  +N+L+NSN +  V DFG  R++D  +++ +   G    
Sbjct: 122 LRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSG 178

Query: 291 I 291
           +
Sbjct: 179 M 179

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 41/149 (27%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALK-----KLHHSETEDSAF------------------- 185
           +G G +  V   +    G  VA+K     K+   +                         
Sbjct: 24  LGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQ 83

Query: 186 VVYSPQCMFFIYEYMERGSLF--CVLR---DDDEAIELNWTRRMNIVKSVAHALSYLHHD 240
           V+ +P  +F + EY+  G LF         D+ E+      RR  + + +   + Y H  
Sbjct: 84  VISTPSDIFMVMEYVSGGELFDYICKNGRLDEKES------RR--LFQQILSGVDYCHRH 135

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFG 269
               +VHRD+   N+LL++++ A +ADFG
Sbjct: 136 M---VVHRDLKPENVLLDAHMNAKIADFG 161

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 59/214 (27%), Positives = 87/214 (40%), Gaps = 54/214 (25%)

Query: 145 FHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------HSETE-------DSAF 185
           F I   +GTG +  V+      +G+  A+K L            H+  E          F
Sbjct: 8   FQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPF 67

Query: 186 VV---YS---PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS------VAHA 233
           ++    +    Q +F I +Y+E G LF +LR           +R     +      V  A
Sbjct: 68  IIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKS---------QRFPNPVAKFYAAEVCLA 118

Query: 234 LSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIAL 293
           L YLH      I++RD+   NILL+ N    + DFG  +   V     TL  GT  YIA 
Sbjct: 119 LEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKY--VPDVTYTL-CGTPDYIAP 172

Query: 294 ELV----YTMVVTEKCVIYSFGVVALEVLMGTHP 323
           E+V    Y   +      +SFG++  E+L G  P
Sbjct: 173 EVVSTKPYNKSID----WWSFGILIYEMLAGYTP 202

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 26  SFLKS-DMSFNNLDGEIPT--YLRDNPPKSFVGNKGLCG 61
            FL S ++SFNNL GEIP    L+     ++  NK LCG
Sbjct: 268 KFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 38/168 (22%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKK--------------------LHHS 178
           +    +     +G+G Y +V  A +   G  VA+KK                    L H 
Sbjct: 22  EVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM 81

Query: 179 ETED--SAFVVYSPQC-------MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS 229
             E+      V++P          + +  +M    L  +++ +     L   R   +V  
Sbjct: 82  RHENVIGLLDVFTPDETLDDFTDFYLVMPFMGT-DLGKLMKHEK----LGEDRIQFLVYQ 136

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD 277
           +   L Y+H      I+HRD+   N+ +N + E  + DFG  R  D +
Sbjct: 137 MLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSE 181

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 39/166 (23%)

Query: 142 TEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKK--------------------LHHSET 180
            + +     +G+G Y SV  A +   G+ VA+KK                    L H + 
Sbjct: 23  PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQH 82

Query: 181 ED--SAFVVYSPQC-------MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
           E+      V++P          + +  +M+   L  ++      ++ +  +   +V  + 
Sbjct: 83  ENVIGLLDVFTPASSLRNFYDFYLVMPFMQT-DLQKIMG-----LKFSEEKIQYLVYQML 136

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD 277
             L Y+H   +  +VHRD+   N+ +N + E  + DFG  R  D +
Sbjct: 137 KGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAE 179

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 43.9 bits (103), Expect = 7e-05
 Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 42/210 (20%)

Query: 145 FHIRYCIGTGGYDSVYKAELPD-GKVVALKKLH-----------HSETE--------DSA 184
           F+    +G G +  V  +E     ++ A+K L             +  E           
Sbjct: 343 FNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPP 402

Query: 185 FVV---YSPQCM---FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
           F+       Q M   +F+ EY+  G L   ++      E      +     +A  L +L 
Sbjct: 403 FLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGRFKE---PHAVFYAAEIAIGLFFLQ 459

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ-AGTYGYIALELV- 296
                 I++RD+  +N++L+S     +ADFG  +  ++     T    GT  YIA E++ 
Sbjct: 460 SK---GIIYRDLKLDNVMLDSEGHIKIADFGMCK-ENIWDGVTTKTFCGTPDYIAPEIIA 515

Query: 297 ---YTMVVTEKCVIYSFGVVALEVLMGTHP 323
              Y   V      ++FGV+  E+L G  P
Sbjct: 516 YQPYGKSVD----WWAFGVLLYEMLAGQAP 541

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 27/120 (22%)

Query: 189 SPQCMFFIYEYMERGS--LFCVLRDDDEAIELNWTRRMNIVKSVAH--------ALSYLH 238
             Q M+ + EY   G   +       D   E    +R  +    AH         L YLH
Sbjct: 79  EKQKMYMVMEYCVCGMQEML------DSVPE----KRFPV--CQAHGYFCQLIDGLEYLH 126

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ--AGTYGYIALELV 296
                 IVH+DI   N+LL +     ++  G    L   +++ T +   G+  +   E+ 
Sbjct: 127 SQ---GIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIA 183

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 33/160 (20%), Positives = 52/160 (32%), Gaps = 45/160 (28%)

Query: 143 EYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSET--------------------- 180
           +Y      +G G    V +       +  ALK L                          
Sbjct: 18  DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIV 77

Query: 181 ---EDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIE---LNWTRRM--NIVKSVAH 232
              E+        +C+  + E ++ G LF          +     +T R    I+KS+  
Sbjct: 78  DVYENL---YAGRKCLLIVMECLDGGELF------SRIQDRGDQAFTEREASEIMKSIGE 128

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAF---VADFG 269
           A+ YLH     +I HRD+   N+L  S        + DFG
Sbjct: 129 AIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFG 165

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 51/179 (28%)

Query: 145 FHI--RY----CIGTGGYDSVYKA-ELPDGKVVALKK---------------------LH 176
           F +  RY     +G GG   V+ A +    K VA+KK                     L 
Sbjct: 7   FDLGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLD 66

Query: 177 H--------------SETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTR 222
           H              S+  D    +     ++ + EYME   L  VL        L    
Sbjct: 67  HDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYME-TDLANVLEQGP----LLEEH 121

Query: 223 RMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS-NLEAFVADFGTVRLLDVDSSN 280
               +  +   L Y+H   + +++HRD+   N+ +N+ +L   + DFG  R++D   S+
Sbjct: 122 ARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSH 177

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 39/178 (21%), Positives = 59/178 (33%), Gaps = 45/178 (25%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSAF----------------------VV 187
           +G G Y  V  A      + VA+K +      D                           
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 74

Query: 188 YSPQCMFFIYEYMERGSLFCVLRDD-----DEAIELNWTRRM--NIVKSVAHALSYLHHD 240
                 +   EY   G LF  +  D      +A      +R    ++      + YLH  
Sbjct: 75  REGNIQYLFLEYCSGGELFDRIEPDIGMPEPDA------QRFFHQLM----AGVVYLHGI 124

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA--GTYGYIALELV 296
               I HRDI   N+LL+      ++DFG   +   ++  R L    GT  Y+A EL+
Sbjct: 125 ---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 179

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 32/196 (16%), Positives = 56/196 (28%), Gaps = 60/196 (30%)

Query: 142 TEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKK-----------------LHH------ 177
           ++ + +   +GTG +  V +  ++  GK  ALKK                 L H      
Sbjct: 6   SKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKNRELDIMKVLDHVNIIKL 65

Query: 178 -------SETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELN----------- 219
                   + E                          V+ +  +   LN           
Sbjct: 66  VDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLH 125

Query: 220 ----WTRRMNIVKSVAH----------ALSYLHHDCTPSIVHRDISSNNILLNSNLEAF- 264
                  R      +            A+ ++H   +  I HRDI   N+L+NS      
Sbjct: 126 KVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH---SLGICHRDIKPQNLLVNSKDNTLK 182

Query: 265 VADFGTVRLLDVDSSN 280
           + DFG+ + L     +
Sbjct: 183 LCDFGSAKKLIPSEPS 198

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 51/221 (23%), Positives = 82/221 (37%), Gaps = 61/221 (27%)

Query: 145 FHIRYCIGTGGYDSVYKAELP----DGKVVALKKL------------HHSETE------- 181
           F +   +G GGY  V++         GK+ A+K L             H++ E       
Sbjct: 19  FELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEV 78

Query: 182 DSAFVV---YSPQCM---FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS------ 229
              F+V   Y+ Q     + I EY+  G LF  L  +                +      
Sbjct: 79  KHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLERE---------GIFMEDTACFYLAE 129

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL--LDVDSSNRTLQ-AG 286
           ++ AL +LH      I++RD+   NI+LN      + DFG   L    +     T    G
Sbjct: 130 ISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFG---LCKESIHDGTVTHTFCG 183

Query: 287 TYGYIALELV----YTMVVTEKCVIYSFGVVALEVLMGTHP 323
           T  Y+A E++    +   V      +S G +  ++L G  P
Sbjct: 184 TIEYMAPEILMRSGHNRAVD----WWSLGALMYDMLTGAPP 220

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 57/222 (25%), Positives = 83/222 (37%), Gaps = 59/222 (26%)

Query: 145 FHIRYCIGTGGYDSVYKAELPDGK----VVALKKLH------------HSETE------- 181
           F +   +GTG Y  V+      G     + A+K L             H+ TE       
Sbjct: 56  FELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHI 115

Query: 182 -DSAFVV---YSPQCM---FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS----- 229
             S F+V   Y+ Q       I +Y+  G LF  L             R    +      
Sbjct: 116 RQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQR---------ERFTEHEVQIYVG 166

Query: 230 -VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ-AGT 287
            +  AL +LH      I++RDI   NILL+SN    + DFG  +    D + R     GT
Sbjct: 167 EIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGT 223

Query: 288 YGYIALELV------YTMVVTEKCVIYSFGVVALEVLMGTHP 323
             Y+A ++V      +   V      +S GV+  E+L G  P
Sbjct: 224 IEYMAPDIVRGGDSGHDKAVD----WWSLGVLMYELLTGASP 261

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD 275
            L Y+H   +  I+HRD+  +N+ +N + E  + DFG  R   
Sbjct: 144 GLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARHTA 183

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 42/210 (20%)

Query: 145 FHIRYCIGTGGYDSVYKAELPD-GKVVALKKLH-----------HSETE--------DSA 184
           F +   +G G +  V+ AE     +  A+K L             +  E        +  
Sbjct: 19  FILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHP 78

Query: 185 FVV---YS---PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
           F+     +    + +FF+ EY+  G L   ++   +      +R       +   L +LH
Sbjct: 79  FLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDL---SRATFYAAEIILGLQFLH 135

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL-LDVDSSNRTLQAGTYGYIALELV- 296
                 IV+RD+  +NILL+ +    +ADFG  +  +  D+   T   GT  YIA E++ 
Sbjct: 136 SK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTF-CGTPDYIAPEILL 191

Query: 297 ---YTMVVTEKCVIYSFGVVALEVLMGTHP 323
              Y   V      +SFGV+  E+L+G  P
Sbjct: 192 GQKYNHSVD----WWSFGVLLYEMLIGQSP 217

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 57/219 (26%), Positives = 85/219 (38%), Gaps = 60/219 (27%)

Query: 145 FHIRYCIGTGGYDSVYKAELPD-GKVVALKKL-----------HHSETE--------DSA 184
           FH    IG G +  V  A         A+K L            H  +E           
Sbjct: 40  FHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHP 99

Query: 185 FVV---YSPQCM---FFIYEYMERGSLFCVLRDD---DE------AIELNWTRRMNIVKS 229
           F+V   +S Q     +F+ +Y+  G LF  L+ +    E      A E            
Sbjct: 100 FLVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAE------------ 147

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ-AGTY 288
           +A AL YLH     +IV+RD+   NILL+S     + DFG  +  +++ ++ T    GT 
Sbjct: 148 IASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCK-ENIEHNSTTSTFCGTP 203

Query: 289 GYIALELV----YTMVVTEKCVIYSFGVVALEVLMGTHP 323
            Y+A E++    Y   V      +  G V  E+L G  P
Sbjct: 204 EYLAPEVLHKQPYDRTVD----WWCLGAVLYEMLYGLPP 238

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 39/178 (21%), Positives = 59/178 (33%), Gaps = 45/178 (25%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSAF----------------------VV 187
           +G G Y  V  A      + VA+K +      D                           
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 74

Query: 188 YSPQCMFFIYEYMERGSLFCVLRDD-----DEAIELNWTRRM--NIVKSVAHALSYLHHD 240
                 +   EY   G LF  +  D      +A      +R    ++      + YLH  
Sbjct: 75  REGNIQYLFLEYCSGGELFDRIEPDIGMPEPDA------QRFFHQLM----AGVVYLHGI 124

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA--GTYGYIALELV 296
               I HRDI   N+LL+      ++DFG   +   ++  R L    GT  Y+A EL+
Sbjct: 125 ---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 179

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 9/76 (11%)

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIA 292
            + YLH   +  ++HRD+  +NILLN+     VADFG  R              +     
Sbjct: 121 VIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENT 177

Query: 293 LELVYTM------VVT 302
                        V T
Sbjct: 178 ENFDDDQPILTDYVAT 193

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 42/204 (20%)

Query: 151 IGTGGYDSVYKAELPD-GKVVALKKLH-----------HSETE--------DSAFVV--- 187
           +G G +  V  A + + G + A+K L             + TE        +  F+    
Sbjct: 31  LGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLF 90

Query: 188 YSPQCM---FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS 244
              Q     FF+ E++  G L   ++      E    R       +  AL +LH      
Sbjct: 91  CCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDE---ARARFYAAEIISALMFLHDK---G 144

Query: 245 IVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ-AGTYGYIALELV----YTM 299
           I++RD+  +N+LL+      +ADFG  +   + +   T    GT  YIA E++    Y  
Sbjct: 145 IIYRDLKLDNVLLDHEGHCKLADFGMCK-EGICNGVTTATFCGTPDYIAPEILQEMLYGP 203

Query: 300 VVTEKCVIYSFGVVALEVLMGTHP 323
            V      ++ GV+  E+L G  P
Sbjct: 204 AVD----WWAMGVLLYEMLCGHAP 223

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	412
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.94
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.91
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.87
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.74
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.66
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.94
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.84
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.68
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.25
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.06
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.78
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.74
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.51
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.41
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.39
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.35
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.3
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.1
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.02
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.99
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.87
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.82
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	96.77
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.69
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.66
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	96.63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	96.58
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.54
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	96.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.44
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	96.43
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	96.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.39
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.25
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	96.23
3m19_A	251	Variable lymphocyte receptor A diversity region; a	96.21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	96.2
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	96.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.19
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	96.11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	96.1
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.0
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	95.92
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	95.91
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	95.91
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	95.79
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	95.74
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	95.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	95.7
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	95.69
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	95.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	95.66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	95.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.51
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	95.47
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	95.42
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	95.41
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	95.35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	95.33
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	95.31
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	95.29
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	95.24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	95.23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	95.22
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	95.15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	95.09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	95.09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	95.05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	95.05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	95.05
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	95.02
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	95.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	94.96
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	94.96
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	94.89
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	94.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	94.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	94.84
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	94.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	94.79
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	94.7
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	94.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	94.52
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	94.51
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	94.46
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	94.45
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	94.42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	94.42
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.39
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	94.36
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	94.29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	94.24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	94.23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	94.15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	94.12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	94.11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	94.11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	94.1
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	94.08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	94.04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	94.0
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	93.98
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	93.96
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	93.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	93.79
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	93.7
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	93.64
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	93.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	93.44
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	93.43
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	93.41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	93.38
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	93.35
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	93.31
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	93.3
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.27
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	93.18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	93.17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	93.15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	93.12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	93.1
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	93.09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	93.04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	92.72
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	92.61
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	92.47
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	92.47
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	92.23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	92.18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	91.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	91.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	91.87
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	91.8
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	91.76
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	91.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	91.59
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	91.42
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	91.4
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	91.22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	90.68
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	90.46
1o6v_A	466	Internalin A; bacterial infection, extracellular r	90.43
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	90.32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	90.01
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	89.78
1o6v_A	466	Internalin A; bacterial infection, extracellular r	89.4
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	89.25
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	89.03
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	88.66
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	87.9
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	87.88
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	87.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	87.83
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	87.61
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	86.9
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	86.61
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	84.79
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	84.77
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	83.53
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	83.19
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	82.57
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	80.95
4ano_A	219	ESSB; membrane protein, membrane secretion, ESS ty	80.14

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.4e-53  Score=405.05  Aligned_cols=236  Identities=22%  Similarity=0.307  Sum_probs=194.2

Q ss_pred             cCcccceeeeecCceEEEEEEeC------CCcEEEEEec----------------------cCCccccceEEEecCceEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~  194 (412)
                      +++++.+.||+|+||+||+|.+.      +++.||||++                      +|+|++...+++.+++..+
T Consensus        26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~  105 (308)
T 4gt4_A           26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS  105 (308)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEE
Confidence            34667789999999999999873      4689999964                      6899999999999999999


Q ss_pred             EEEEeccCCceeeeeccCc-------------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC
Q 042435          195 FIYEYMERGSLFCVLRDDD-------------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL  261 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~  261 (412)
                      +|||||++|+|.++|....             ....++|.+++.|+.|||+||+|||++   +|+||||||+|||+++++
T Consensus       106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~  182 (308)
T 4gt4_A          106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKL  182 (308)
T ss_dssp             EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGG
T ss_pred             EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEECCCC
Confidence            9999999999999996432             123599999999999999999999998   999999999999999999


Q ss_pred             cEEEeecCCccccCCCC--CCcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcc
Q 042435          262 EAFVADFGTVRLLDVDS--SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKI  338 (412)
Q Consensus       262 ~~kl~DfGla~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~  338 (412)
                      .+||+|||+++......  .......||+.|||||++.+..++.++|||||||++|||+| |+.||...        ...
T Consensus       183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~--------~~~  254 (308)
T 4gt4_A          183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGY--------SNQ  254 (308)
T ss_dssp             CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTC--------CHH
T ss_pred             CEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCC--------CHH
Confidence            99999999998764432  22344679999999999999999999999999999999999 89998732        112


Q ss_pred             hhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          339 MLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      .+.+.+......+.+...+   ..+.+++.+||+.||++||||.||+++|+++.
T Consensus       255 ~~~~~i~~~~~~~~p~~~~---~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~  305 (308)
T 4gt4_A          255 DVVEMIRNRQVLPCPDDCP---AWVYALMIECWNEFPSRRPRFKDIHSRLRAWG  305 (308)
T ss_dssp             HHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred             HHHHHHHcCCCCCCcccch---HHHHHHHHHHcCCChhHCcCHHHHHHHHHhcc
Confidence            2333333333333333332   34889999999999999999999999999864

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=3.3e-53  Score=406.14  Aligned_cols=239  Identities=23%  Similarity=0.324  Sum_probs=189.6

Q ss_pred             cCcccceeeeecCceEEEEEEeC------CCcEEEEEec---------------------cCCccccceEEEecCceEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ++|.+.++||+|+||+||+|++.      +++.||||++                     +|+|++...+++.+++..+|
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l  120 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM  120 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            46778899999999999999874      4789999964                     68999999999999999999


Q ss_pred             EEEeccCCceeeeeccCcc------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcE
Q 042435          196 IYEYMERGSLFCVLRDDDE------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEA  263 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~  263 (412)
                      |||||++|+|.++++....            ...++|.+++.|+.|||+||+|||++   +|+||||||+|||+++++.+
T Consensus       121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~~~  197 (329)
T 4aoj_A          121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLVV  197 (329)
T ss_dssp             EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEE
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECCCCcE
Confidence            9999999999999876431            23599999999999999999999998   99999999999999999999


Q ss_pred             EEeecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchh
Q 042435          264 FVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIML  340 (412)
Q Consensus       264 kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~  340 (412)
                      ||+|||+++.......  ......||+.|||||++.+..++.++|||||||++|||+| |+.||...       .. ..+
T Consensus       198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~-------~~-~~~  269 (329)
T 4aoj_A          198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQL-------SN-TEA  269 (329)
T ss_dssp             EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSS-------CH-HHH
T ss_pred             EEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCC-------CH-HHH
Confidence            9999999987644322  2244579999999999999999999999999999999999 89998732       11 122


Q ss_pred             hHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCC
Q 042435          341 IDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMK  395 (412)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  395 (412)
                      .+.+......+.+....   ..+.+|+.+||+.||++||||+||+++|+.+.+.+
T Consensus       270 ~~~i~~g~~~~~p~~~~---~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p  321 (329)
T 4aoj_A          270 IDCITQGRELERPRACP---PEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP  321 (329)
T ss_dssp             HHHHHHTCCCCCCTTCC---HHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred             HHHHHcCCCCCCccccc---HHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhCC
Confidence            23333322233233322   34789999999999999999999999999886543

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=1.3e-53  Score=403.61  Aligned_cols=237  Identities=24%  Similarity=0.350  Sum_probs=193.2

Q ss_pred             cCcccceeeeecCceEEEEEEeC------CCcEEEEEec---------------------cCCccccceEEEecCceEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ++|.+.+.||+|+||+||+|++.      +++.||||++                     +|+|++...+++.+++..++
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l   92 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM   92 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence            56888999999999999999864      4789999964                     69999999999999999999


Q ss_pred             EEEeccCCceeeeeccCc----------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEE
Q 042435          196 IYEYMERGSLFCVLRDDD----------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFV  265 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~----------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl  265 (412)
                      |||||++|+|.++|+...          ....++|.+++.|+.|||+||+|||++   +|+||||||+|||+++++.+||
T Consensus        93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~Ki  169 (299)
T 4asz_A           93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKI  169 (299)
T ss_dssp             EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEE
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCCcEEE
Confidence            999999999999997542          123699999999999999999999998   9999999999999999999999


Q ss_pred             eecCCccccCCCCCCc--ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhH
Q 042435          266 ADFGTVRLLDVDSSNR--TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLID  342 (412)
Q Consensus       266 ~DfGla~~~~~~~~~~--~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~  342 (412)
                      +|||+|+.........  ....||+.|||||++.+..++.++|||||||++|||+| |+.||...       ... .+..
T Consensus       170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~-------~~~-~~~~  241 (299)
T 4asz_A          170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQL-------SNN-EVIE  241 (299)
T ss_dssp             CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS-------CHH-HHHH
T ss_pred             CCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCC-------CHH-HHHH
Confidence            9999998664433222  23468999999999999999999999999999999999 89998732       111 2222


Q ss_pred             HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      .+.....++.+...+   ..+.+++.+||+.||++||||+||.+.|+++.+
T Consensus       242 ~i~~~~~~~~p~~~~---~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~  289 (299)
T 4asz_A          242 CITQGRVLQRPRTCP---QEVYELMLGCWQREPHMRKNIKGIHTLLQNLAK  289 (299)
T ss_dssp             HHHHTCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCccch---HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence            232222222223322   348899999999999999999999999987654

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-52  Score=397.72  Aligned_cols=235  Identities=22%  Similarity=0.346  Sum_probs=183.9

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      +++.+.++||+|+||+||+|++++  .||||.+                       +|+|++...+++. .+..+|||||
T Consensus        36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-~~~~~iVmEy  112 (307)
T 3omv_A           36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQW  112 (307)
T ss_dssp             TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-CCeEEEEEEc
Confidence            567888999999999999998854  5899954                       6888888887765 4668999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC-
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS-  278 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~-  278 (412)
                      |++|+|.++|+....  .++|.+++.|+.|||+||+|||++   +|+||||||+|||+++++.+||+|||+|+...... 
T Consensus       113 ~~gGsL~~~l~~~~~--~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~  187 (307)
T 3omv_A          113 CEGSSLYKHLHVQET--KFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG  187 (307)
T ss_dssp             CSSCBHHHHHHTSCC--CCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC------
T ss_pred             CCCCCHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceecccCCc
Confidence            999999999976532  599999999999999999999998   99999999999999999999999999998765332 


Q ss_pred             -CCcccccccccccccccccC---cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCc-cc
Q 042435          279 -SNRTLQAGTYGYIALELVYT---MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP-IN  353 (412)
Q Consensus       279 -~~~~~~~gt~~y~aPE~~~~---~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  353 (412)
                       .......||+.|||||++.+   ..|+.++|||||||++|||+||+.||...       .....+...+......+ ..
T Consensus       188 ~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~-------~~~~~~~~~~~~~~~~p~~~  260 (307)
T 3omv_A          188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHI-------NNRDQIIFMVGRGYASPDLS  260 (307)
T ss_dssp             ------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTC-------CCHHHHHHHHHTTCCCCCST
T ss_pred             ceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCC-------ChHHHHHHHHhcCCCCCCcc
Confidence             22345689999999999863   46899999999999999999999999732       11222233333222211 11


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      .........+.+++.+||+.||++||||.||+++|+.+.
T Consensus       261 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~  299 (307)
T 3omv_A          261 KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ  299 (307)
T ss_dssp             TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence            111122334889999999999999999999999998764

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=9.3e-52  Score=392.63  Aligned_cols=246  Identities=24%  Similarity=0.341  Sum_probs=189.8

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecCc----eEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSPQ----CMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~----~~~lv~e  198 (412)
                      ++|.+.+.||+|+||+||+|++ +|+.||||++                    +|+|+....+++..++    ..+||||
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~E   81 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD   81 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEec
Confidence            4577889999999999999998 6899999964                    6889998888877543    6899999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhC-----CCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHD-----CTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~-----~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ||++|+|.++++..    .++|..+.+++.|+++||+|||++     +.++|+||||||+|||++.++++||+|||+|+.
T Consensus        82 y~~~gsL~~~l~~~----~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~  157 (303)
T 3hmm_A           82 YHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR  157 (303)
T ss_dssp             CCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             CCCCCcHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCcc
Confidence            99999999999764    489999999999999999999986     256899999999999999999999999999987


Q ss_pred             cCCCCCC----cccccccccccccccccCc------ccCcccccHHHHHHHHHHHhCCCCccccccccc-------CCCC
Q 042435          274 LDVDSSN----RTLQAGTYGYIALELVYTM------VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS-------SSGP  336 (412)
Q Consensus       274 ~~~~~~~----~~~~~gt~~y~aPE~~~~~------~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~-------~~~~  336 (412)
                      .......    .....||+.|||||++.+.      .++.++|||||||++|||+||+.|+........       ....
T Consensus       158 ~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~  237 (303)
T 3hmm_A          158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS  237 (303)
T ss_dssp             EETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred             ccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccch
Confidence            6543322    2345799999999998654      478899999999999999999888753211100       0000


Q ss_pred             cchhhH-HhhhccCCccchh--hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          337 KIMLID-ILYQRLSPPINQK--IIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       337 ~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      ...+.. +......++.+..  ..+....+.+++.+||+.||++||||.||++.|+++.+
T Consensus       238 ~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~  297 (303)
T 3hmm_A          238 VEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ  297 (303)
T ss_dssp             HHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHH
Confidence            111111 2233333333222  12334458899999999999999999999999988754

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=9.7e-52  Score=395.06  Aligned_cols=236  Identities=22%  Similarity=0.249  Sum_probs=192.0

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------cCCccccceEEEecCceEEEEEEeccCC
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------HHSETEDSAFVVYSPQCMFFIYEYMERG  203 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------~~~~~~~~~~~~~~~~~~~lv~ey~~~g  203 (412)
                      ..+.|++.++||+|+||+||+|+. .+|+.||||++                +|+|++....++.+++..|||||||++|
T Consensus        56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg  135 (336)
T 4g3f_A           56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGG  135 (336)
T ss_dssp             TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCCTTC
T ss_pred             chhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHhHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeccCCC
Confidence            346788899999999999999987 46999999964                6899999999999999999999999999


Q ss_pred             ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC-cEEEeecCCccccCCCCCC--
Q 042435          204 SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL-EAFVADFGTVRLLDVDSSN--  280 (412)
Q Consensus       204 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~-~~kl~DfGla~~~~~~~~~--  280 (412)
                      +|.++++...   .+++.....++.||+.||+|||++   +|+||||||+|||++.++ .+||+|||+|+.+......  
T Consensus       136 ~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~  209 (336)
T 4g3f_A          136 SLGQLIKQMG---CLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKS  209 (336)
T ss_dssp             BHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC--------
T ss_pred             cHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccc
Confidence            9999997543   599999999999999999999998   999999999999999887 6999999999976543221  


Q ss_pred             ---cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCC-ccchhh
Q 042435          281 ---RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP-PINQKI  356 (412)
Q Consensus       281 ---~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  356 (412)
                         ....+||+.|||||++.+..|+.++|||||||++|||+||+.||...       ........+....... ..+.. 
T Consensus       210 ~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~-------~~~~~~~~i~~~~~~~~~~~~~-  281 (336)
T 4g3f_A          210 LLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQY-------FRGPLCLKIASEPPPIREIPPS-  281 (336)
T ss_dssp             ----CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTT-------CCSCCHHHHHHSCCGGGGSCTT-
T ss_pred             eecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC-------CHHHHHHHHHcCCCCchhcCcc-
Confidence               23357999999999999999999999999999999999999999732       1222233333322111 11111 


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                        ....+.+++.+||+.||++|||+.|++++|....
T Consensus       282 --~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l  315 (336)
T 4g3f_A          282 --CAPLTAQAIQEGLRKEPVHRASAMELRRKVGKAL  315 (336)
T ss_dssp             --SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             --CCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHH
Confidence              2234788999999999999999999999886553

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1.6e-51  Score=394.75  Aligned_cols=229  Identities=24%  Similarity=0.357  Sum_probs=192.6

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEec
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      +.|++.+.||+|+||+||+|.. .+|+.||||++                     +|+|++....++.+++..|||||||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~  153 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  153 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence            5689999999999999999977 47999999964                     6889999999999999999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++|+|.+++...    .+++.+...++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+|+.+......
T Consensus       154 ~gg~L~~~l~~~----~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~  226 (346)
T 4fih_A          154 EGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR  226 (346)
T ss_dssp             TTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC
T ss_pred             CCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCCCCc
Confidence            999999988754    489999999999999999999999   9999999999999999999999999999987665555


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ....+||+.|||||++.+..|+.++|||||||++|||++|+.||...        ........+.....+.. .......
T Consensus       227 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~--------~~~~~~~~i~~~~~~~~-~~~~~~s  297 (346)
T 4fih_A          227 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE--------PPLKAMKMIRDNLPPRL-KNLHKVS  297 (346)
T ss_dssp             BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS--------CHHHHHHHHHHSSCCCC-SCGGGSC
T ss_pred             ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc--------CHHHHHHHHHcCCCCCC-CccccCC
Confidence            56678999999999999999999999999999999999999999732        11112222222222211 1111222


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..+.+++.+||+.||++|||++|++++
T Consensus       298 ~~~~dli~~~L~~dP~~R~ta~e~l~H  324 (346)
T 4fih_A          298 PSLKGFLDRLLVRDPAQRATAAELLKH  324 (346)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             HHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            347899999999999999999999875

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=1.1e-51  Score=398.74  Aligned_cols=242  Identities=21%  Similarity=0.284  Sum_probs=196.9

Q ss_pred             HHHhhcCcccceeeeecCceEEEEEEeCC------CcEEEEEec-----------------------cCCccccceEEEe
Q 042435          138 LIDATEYFHIRYCIGTGGYDSVYKAELPD------GKVVALKKL-----------------------HHSETEDSAFVVY  188 (412)
Q Consensus       138 l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~------~~~vAvK~l-----------------------~~~~~~~~~~~~~  188 (412)
                      .+-..++|++.+.||+|+||+||+|.+..      ++.||||++                       +|+|++...++|.
T Consensus        59 wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~  138 (353)
T 4ase_A           59 WEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACT  138 (353)
T ss_dssp             HBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEE
Confidence            33455789999999999999999997642      468999965                       3478888888886


Q ss_pred             cC-ceEEEEEEeccCCceeeeeccCcc-------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCC
Q 042435          189 SP-QCMFFIYEYMERGSLFCVLRDDDE-------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNN  254 (412)
Q Consensus       189 ~~-~~~~lv~ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~N  254 (412)
                      .. +..++|||||++|+|.++|+....             ...++|.+++.++.|||+||+|||++   +|+||||||+|
T Consensus       139 ~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDLK~~N  215 (353)
T 4ase_A          139 KPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARN  215 (353)
T ss_dssp             CTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGG
T ss_pred             ecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCccCccc
Confidence            64 568999999999999999975432             23489999999999999999999999   99999999999


Q ss_pred             EEecCCCcEEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccc
Q 042435          255 ILLNSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLS  331 (412)
Q Consensus       255 ILl~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~  331 (412)
                      ||+++++.+||+|||+|+........  .....||+.|||||++.+..|+.++|||||||++|||+| |+.||...    
T Consensus       216 ILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~----  291 (353)
T 4ase_A          216 ILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV----  291 (353)
T ss_dssp             EEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC----
T ss_pred             eeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCC----
Confidence            99999999999999999976544332  244578999999999999999999999999999999998 99998732    


Q ss_pred             cCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          332 SSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                         .....+...+.....++.+.....   .+.+++.+||+.||++|||+.||+++|+++.
T Consensus       292 ---~~~~~~~~~i~~g~~~~~p~~~~~---~~~~li~~c~~~dP~~RPt~~eil~~L~~ll  346 (353)
T 4ase_A          292 ---KIDEEFCRRLKEGTRMRAPDYTTP---EMYQTMLDCWHGEPSQRPTFSELVEHLGNLL  346 (353)
T ss_dssp             ---CCSHHHHHHHHHTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHcCCCCCCCccCCH---HHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence               222234444444444333333322   4788999999999999999999999998764

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=7.2e-52  Score=397.77  Aligned_cols=230  Identities=21%  Similarity=0.337  Sum_probs=185.5

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ++|++.+.||+|+||+||+|+. .+|+.||||++                       +|+|++....++.+++..|+|||
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE  103 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD  103 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence            6899999999999999999976 57999999964                       68899999999999999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      ||++|+|.+++..... ..+++.+...|+.||+.||+|||++   +|+||||||+|||++.++.+||+|||+|+......
T Consensus       104 y~~gg~L~~~i~~~~~-~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~  179 (350)
T 4b9d_A          104 YCEGGDLFKRINAQKG-VLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV  179 (350)
T ss_dssp             CCTTCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred             CCCCCcHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceeecCCc
Confidence            9999999999975432 2478899999999999999999999   99999999999999999999999999998765432


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      ......+||+.|||||++.+..|+.++|||||||++|||+||+.||...       .....+..+......+ .+...  
T Consensus       180 ~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~-------~~~~~~~~i~~~~~~~-~~~~~--  249 (350)
T 4b9d_A          180 ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAG-------SMKNLVLKIISGSFPP-VSLHY--  249 (350)
T ss_dssp             HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS-------SHHHHHHHHHHTCCCC-CCTTS--
T ss_pred             ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-------CHHHHHHHHHcCCCCC-CCccC--
Confidence            2334567999999999999999999999999999999999999999732       1122233333333222 22222  


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                       ...+.+++.+||+.||++|||++|++++
T Consensus       250 -s~~~~~li~~~L~~dP~~R~s~~e~l~h  277 (350)
T 4b9d_A          250 -SYDLRSLVSQLFKRNPRDRPSVNSILEK  277 (350)
T ss_dssp             -CHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             -CHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence             2237899999999999999999999874

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=2.2e-50  Score=396.07  Aligned_cols=230  Identities=23%  Similarity=0.355  Sum_probs=192.9

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEe
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      .+.|++.+.||+|+||.||+|.. .+|+.||||++                     +|+|++....++.+++.+||||||
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy  229 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF  229 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence            35699999999999999999977 46999999964                     688999999999999999999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      |++|+|.+++...    .+++.++..++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+|+.+.....
T Consensus       230 ~~gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~  302 (423)
T 4fie_A          230 LEGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP  302 (423)
T ss_dssp             CTTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC
T ss_pred             CCCCcHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCCCc
Confidence            9999999998654    489999999999999999999999   999999999999999999999999999998766655


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      .....+||+.|||||++.+..|+.++|||||||++|||++|+.||...        ........+.....+.. ......
T Consensus       303 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~--------~~~~~~~~i~~~~~~~~-~~~~~~  373 (423)
T 4fie_A          303 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE--------PPLKAMKMIRDNLPPRL-KNLHKV  373 (423)
T ss_dssp             CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS--------CHHHHHHHHHHSCCCCC-SCTTSS
T ss_pred             cccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc--------CHHHHHHHHHcCCCCCC-cccccC
Confidence            566778999999999999999999999999999999999999999732        11112222222222211 111112


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+.+|+.+||+.||++|||+.|++++
T Consensus       374 s~~~~dli~~~L~~dP~~R~ta~ell~H  401 (423)
T 4fie_A          374 SPSLKGFLDRLLVRDPAQRATAAELLKH  401 (423)
T ss_dssp             CHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             CHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            2347899999999999999999999885

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=4.1e-50  Score=377.31  Aligned_cols=227  Identities=22%  Similarity=0.309  Sum_probs=179.2

Q ss_pred             cccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEec----CceEEEE
Q 042435          145 FHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYS----PQCMFFI  196 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~----~~~~~lv  196 (412)
                      |+..++||+|+||+||+|.+ .+++.||+|++                       +|+|++....++.+    .+.+|+|
T Consensus        28 ~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lv  107 (290)
T 3fpq_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEE
Confidence            35667899999999999977 46899999954                       68899888877643    4568999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC-CCcEEEeecCCccccC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS-NLEAFVADFGTVRLLD  275 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~-~~~~kl~DfGla~~~~  275 (412)
                      ||||++|+|.+++....   .+++..+..++.||+.||+|||++ .++|+||||||+|||++. ++.+||+|||+|+...
T Consensus       108 mEy~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~  183 (290)
T 3fpq_A          108 TELMTSGTLKTYLKRFK---VMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR  183 (290)
T ss_dssp             EECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred             EeCCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEECCCCCEEEEeCcCCEeCC
Confidence            99999999999997543   589999999999999999999998 223999999999999984 7899999999998643


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      .  ......+||+.|||||++.+ .|+.++|||||||++|||+||+.||...       .....+...+.....+.... 
T Consensus       184 ~--~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~-------~~~~~~~~~i~~~~~~~~~~-  252 (290)
T 3fpq_A          184 A--SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC-------QNAAQIYRRVTSGVKPASFD-  252 (290)
T ss_dssp             T--TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC-------SSHHHHHHHHTTTCCCGGGG-
T ss_pred             C--CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCC-------CcHHHHHHHHHcCCCCCCCC-
Confidence            2  23345689999999998865 6999999999999999999999999632       11112222232222221111 


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                       ......+.+++.+||+.||++|||++|+++|
T Consensus       253 -~~~~~~~~~li~~~L~~dP~~R~s~~e~l~H  283 (290)
T 3fpq_A          253 -KVAIPEVKEIIEGCIRQNKDERYSIKDLLNH  283 (290)
T ss_dssp             -GCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             -ccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence             1112247889999999999999999999875

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=2.3e-50  Score=380.98  Aligned_cols=227  Identities=23%  Similarity=0.318  Sum_probs=185.9

Q ss_pred             cCcccceeeeecCceEEEEEEe----CCCcEEEEEec-----------------------cCCccccceEEEecCceEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL----PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~----~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ++|++.+.||+|+||+||+|+.    .+++.||||.+                       +|+|++....++.+++..|+
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i  103 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL  103 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            5799999999999999999975    24789999954                       57888888888899999999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      |||||++|+|.+++....   .+++.+...++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+|+...
T Consensus       104 vmEy~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~  177 (304)
T 3ubd_A          104 ILDFLRGGDLFTRLSKEV---MFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESI  177 (304)
T ss_dssp             EECCCTTCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC--
T ss_pred             EEEcCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceecc
Confidence            999999999999997643   589999999999999999999999   99999999999999999999999999998765


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      .........+||+.|||||++.+..|+.++||||+||++|||+||+.||...       ........+.......+  ..
T Consensus       178 ~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~-------~~~~~~~~i~~~~~~~p--~~  248 (304)
T 3ubd_A          178 DHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK-------DRKETMTMILKAKLGMP--QF  248 (304)
T ss_dssp             ---CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHCCCCCC--TT
T ss_pred             CCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc-------CHHHHHHHHHcCCCCCC--Cc
Confidence            4444445678999999999999999999999999999999999999999732       11222233333333222  22


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCC-----HHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPT-----MQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  387 (412)
                      ..   ..+.+++.+||+.||++|||     ++|+++|
T Consensus       249 ~s---~~~~~li~~~L~~dP~~R~ta~~~~~~eil~H  282 (304)
T 3ubd_A          249 LS---PEAQSLLRMLFKRNPANRLGAGPDGVEEIKRH  282 (304)
T ss_dssp             SC---HHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTS
T ss_pred             CC---HHHHHHHHHHcccCHHHCCCCCcCCHHHHHcC
Confidence            22   23788999999999999998     4677653

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=1.9e-50  Score=381.85  Aligned_cols=226  Identities=22%  Similarity=0.351  Sum_probs=190.3

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||+||+|+. .+|+.||||.+                        +|+++.+....+.+++..|+||
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm  111 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL  111 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            5799999999999999999976 57999999954                        6889999999999999999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      |||++|+|.+++....   .+++.....++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+|+.+...
T Consensus       112 Ey~~gG~L~~~i~~~~---~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~  185 (311)
T 4aw0_A          112 SYAKNGELLKYIRKIG---SFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE  185 (311)
T ss_dssp             CCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred             ecCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecCCC
Confidence            9999999999997543   589999999999999999999999   9999999999999999999999999999987543


Q ss_pred             C--CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          278 S--SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       278 ~--~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      .  ......+||+.|||||++.+..|+.++||||+||++|||+||+.||...       ........+.......+  ..
T Consensus       186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~-------~~~~~~~~i~~~~~~~p--~~  256 (311)
T 4aw0_A          186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG-------NEGLIFAKIIKLEYDFP--EK  256 (311)
T ss_dssp             TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHTCCCCC--TT
T ss_pred             CCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC-------CHHHHHHHHHcCCCCCC--cc
Confidence            2  2334568999999999999999999999999999999999999999732       11222333333333222  22


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQ  386 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  386 (412)
                      ..   ..+.+++.+||+.||++|||++|++.
T Consensus       257 ~s---~~~~dli~~lL~~dp~~R~t~~e~~~  284 (311)
T 4aw0_A          257 FF---PKARDLVEKLLVLDATKRLGCEEMEG  284 (311)
T ss_dssp             CC---HHHHHHHHHHSCSSGGGSTTSGGGTC
T ss_pred             cC---HHHHHHHHHHccCCHhHCcChHHHcC
Confidence            22   23788999999999999999998743

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=2.9e-49  Score=368.45  Aligned_cols=225  Identities=22%  Similarity=0.310  Sum_probs=174.1

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||+||+|.. .+|+.||||.+                        +|+|+.+...++.+++..|+||
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm   92 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI   92 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence            6899999999999999999976 46999999954                        5888888888899999999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+ +|+|.+++....   .+++.+...++.|++.||+|||++   +|+||||||+|||+++++.+||+|||+|+.....
T Consensus        93 Ey~-~g~L~~~l~~~~---~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~  165 (275)
T 3hyh_A           93 EYA-GNELFDYIVQRD---KMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG  165 (275)
T ss_dssp             ECC-CEEHHHHHHHSC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC------
T ss_pred             eCC-CCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecCCC
Confidence            999 689999887654   599999999999999999999999   9999999999999999999999999999875433


Q ss_pred             CCCcccccccccccccccccCccc-CcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVV-TEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~-s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      . ......||+.|||||++.+..+ +.++||||+||++|||+||+.||...       ........+.......  +...
T Consensus       166 ~-~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~-------~~~~~~~~i~~~~~~~--p~~~  235 (275)
T 3hyh_A          166 N-FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE-------SIPVLFKNISNGVYTL--PKFL  235 (275)
T ss_dssp             ----------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHTCCCC--CTTS
T ss_pred             C-ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCC-------CHHHHHHHHHcCCCCC--CCCC
Confidence            2 2345689999999999998876 57999999999999999999999732       1111122222222221  1222


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                         ...+.+++.+||+.||++|||++|++++
T Consensus       236 ---s~~~~~li~~~L~~dP~~R~s~~eil~h  263 (275)
T 3hyh_A          236 ---SPGAAGLIKRMLIVNPLNRISIHEIMQD  263 (275)
T ss_dssp             ---CHHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred             ---CHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence               2237889999999999999999999885

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=1.3e-48  Score=369.62  Aligned_cols=229  Identities=22%  Similarity=0.304  Sum_probs=172.6

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------------cCCccccceEEEecCc--------
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------HHSETEDSAFVVYSPQ--------  191 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~--------  191 (412)
                      ++|++.+.||+|+||+||+|+. .+|+.||||++                      +|+|+++....+.+.+        
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~   84 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS   84 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence            5699999999999999999976 47999999964                      6888888777654332        


Q ss_pred             ----eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEee
Q 042435          192 ----CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVAD  267 (412)
Q Consensus       192 ----~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~D  267 (412)
                          ..|+|||||++|+|.+++.........++...+.++.||+.||+|||++   +|+||||||+|||++.++.+||+|
T Consensus        85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vKl~D  161 (299)
T 4g31_A           85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGD  161 (299)
T ss_dssp             --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC
T ss_pred             CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEEEcc
Confidence                4799999999999999998765444577888899999999999999999   999999999999999999999999


Q ss_pred             cCCccccCCCCCC------------cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCC
Q 042435          268 FGTVRLLDVDSSN------------RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSG  335 (412)
Q Consensus       268 fGla~~~~~~~~~------------~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~  335 (412)
                      ||+|+........            ....+||+.|||||++.+..|+.++|||||||++|||++   ||....       
T Consensus       162 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~-------  231 (299)
T 4g31_A          162 FGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM-------  231 (299)
T ss_dssp             CCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH-------
T ss_pred             CccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc-------
Confidence            9999876543211            133579999999999999999999999999999999996   765211       


Q ss_pred             CcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          336 PKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                        . ....+........++........+.+++.+||+.||++|||+.|++++
T Consensus       232 --~-~~~~~~~~~~~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  280 (299)
T 4g31_A          232 --E-RVRTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIEN  280 (299)
T ss_dssp             --H-HHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             --H-HHHHHHHHhcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence              0 011111111111122223333446789999999999999999999874

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=9.4e-46  Score=359.21  Aligned_cols=182  Identities=26%  Similarity=0.366  Sum_probs=155.7

Q ss_pred             HHHHHHhhcCcccceeeeecCceEEEEEEeC----CCcEEEEEec--------------------cCCccccceEEEecC
Q 042435          135 YENLIDATEYFHIRYCIGTGGYDSVYKAELP----DGKVVALKKL--------------------HHSETEDSAFVVYSP  190 (412)
Q Consensus       135 ~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~----~~~~vAvK~l--------------------~~~~~~~~~~~~~~~  190 (412)
                      ++.+.+..+.|++.+.||+|+||+||+|+.+    +++.||+|++                    +|+++.....++.+.
T Consensus        13 ~~~~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~   92 (361)
T 4f9c_A           13 YEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRKN   92 (361)
T ss_dssp             HHHSGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSBTTBCCCSEEEEET
T ss_pred             HHhcCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCCCCCceEEEEEEEC
Confidence            3444556788999999999999999999652    4789999964                    478888888889999


Q ss_pred             ceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC-CcEEEeecC
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN-LEAFVADFG  269 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~-~~~kl~DfG  269 (412)
                      +..|+|||||++|+|.+++.      .+++.+...++.|++.||+|||++   +|+||||||+|||++.+ +.+||+|||
T Consensus        93 ~~~~lvmE~~~g~~L~~~~~------~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DFG  163 (361)
T 4f9c_A           93 DHVVIAMPYLEHESFLDILN------SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDFG  163 (361)
T ss_dssp             TEEEEEEECCCCCCHHHHHT------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred             CEEEEEEeCCCcccHHHHHc------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcCC
Confidence            99999999999999999884      388999999999999999999999   99999999999999876 799999999


Q ss_pred             CccccCCCCC----------------------------CcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhC
Q 042435          270 TVRLLDVDSS----------------------------NRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMG  320 (412)
Q Consensus       270 la~~~~~~~~----------------------------~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg  320 (412)
                      +|+.......                            .....+||+.|+|||++.+. .++.++||||+||++|||+||
T Consensus       164 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G  243 (361)
T 4f9c_A          164 LAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSG  243 (361)
T ss_dssp             TCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHT
T ss_pred             CCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHC
Confidence            9986532211                            11334799999999999875 489999999999999999999


Q ss_pred             CCCcc
Q 042435          321 THPGE  325 (412)
Q Consensus       321 ~~P~~  325 (412)
                      +.||.
T Consensus       244 ~~Pf~  248 (361)
T 4f9c_A          244 RYPFY  248 (361)
T ss_dssp             CSSSS
T ss_pred             CCCCC
Confidence            99995

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.8e-45  Score=361.20  Aligned_cols=238  Identities=21%  Similarity=0.254  Sum_probs=179.9

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEec------Cc
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYS------PQ  191 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~------~~  191 (412)
                      .++|++.+.||+|+||+||+|.. .+|+.||||++                       +|+|++....++..      .+
T Consensus        53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~  132 (398)
T 4b99_A           53 GDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK  132 (398)
T ss_dssp             CSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred             CCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence            35799999999999999999976 57999999965                       57777777766543      36


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                      ..|+|||||+ |+|.+++....   .+++..+..++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+|
T Consensus       133 ~~~ivmE~~~-g~L~~~i~~~~---~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGla  205 (398)
T 4b99_A          133 SVYVVLDLME-SDLHQIIHSSQ---PLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMA  205 (398)
T ss_dssp             CEEEEEECCS-EEHHHHHTSSS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             EEEEEEeCCC-CCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeeccee
Confidence            7899999995 78999887654   599999999999999999999999   9999999999999999999999999999


Q ss_pred             cccCCC----CCCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccc--------cCCCCc-
Q 042435          272 RLLDVD----SSNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLS--------SSSGPK-  337 (412)
Q Consensus       272 ~~~~~~----~~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~--------~~~~~~-  337 (412)
                      +.+...    .......+||+.|||||++.+. .++.++||||+||++|||++|+.||.......        ...... 
T Consensus       206 ~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~  285 (398)
T 4b99_A          206 RGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPA  285 (398)
T ss_dssp             BCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGG
T ss_pred             eecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChH
Confidence            876432    1223456899999999998775 56899999999999999999999996321000        000000 


Q ss_pred             -------chhhHHhhhccCCccchhh----HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          338 -------IMLIDILYQRLSPPINQKI----IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       338 -------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                             ....... .......+...    ......+.+|+.+||..||++|||+.|+++|
T Consensus       286 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  345 (398)
T 4b99_A          286 VIQAVGAERVRAYI-QSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH  345 (398)
T ss_dssp             GTC-----CHHHHH-HSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             Hhhhhhhhhhhhhh-hcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                   0000000 01111000000    0112347899999999999999999999886

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=6.8e-45  Score=372.99  Aligned_cols=228  Identities=20%  Similarity=0.267  Sum_probs=186.7

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------------cCCccccceEEEecCceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------------HHSETEDSAFVVYSPQCM  193 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------------~~~~~~~~~~~~~~~~~~  193 (412)
                      .++|++.++||+|+||+||+|+. .+|+.||||.+                           +|++++.....+.+.+.+
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l  267 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL  267 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence            36899999999999999999977 46999999964                           478888888899999999


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      |+|||||+||+|.++|....   .+++.....++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+|+.
T Consensus       268 ylVmEy~~GGdL~~~l~~~~---~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~~  341 (689)
T 3v5w_A          268 SFILDLMNGGDLHYHLSQHG---VFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACD  341 (689)
T ss_dssp             EEEECCCCSCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEEecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceeee
Confidence            99999999999999997643   589999999999999999999998   999999999999999999999999999987


Q ss_pred             cCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcch-hhHHhhhccCCc
Q 042435          274 LDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIM-LIDILYQRLSPP  351 (412)
Q Consensus       274 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  351 (412)
                      .....  ....+||+.|||||++.. ..|+.++|+||+||++|||++|+.||....     ...... ...+....... 
T Consensus       342 ~~~~~--~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~-----~~~~~~i~~~i~~~~~~~-  413 (689)
T 3v5w_A          342 FSKKK--PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHK-----TKDKHEIDRMTLTMAVEL-  413 (689)
T ss_dssp             CSSCC--CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGG-----CCCHHHHHHHHHHCCCCC-
T ss_pred             cCCCC--CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-----hHHHHHHHHhhcCCCCCC-
Confidence            65432  234689999999999974 579999999999999999999999997321     111111 11222222221 


Q ss_pred             cchhhHHHHHHHHHHHHhcCcCCCCCCCC-----HHHHHHH
Q 042435          352 INQKIIQDIILVSTIALACLRSKPKSRPT-----MQRISQE  387 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  387 (412)
                       +....   ..+.+|+.+||+.||++|++     ++||.+|
T Consensus       414 -p~~~S---~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~H  450 (689)
T 3v5w_A          414 -PDSFS---PELRSLLEGLLQRDVNRRLGCLGRGAQEVKES  450 (689)
T ss_dssp             -CTTSC---HHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTS
T ss_pred             -CccCC---HHHHHHHHHHccCCHhHCCCCCCCCHHHHhcC
Confidence             12222   23789999999999999998     6888764

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=1.8e-44  Score=345.73  Aligned_cols=262  Identities=31%  Similarity=0.512  Sum_probs=210.9

Q ss_pred             CccccHHHHHHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEec----------------------cCCccccceEEE
Q 042435          130 DGKILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL----------------------HHSETEDSAFVV  187 (412)
Q Consensus       130 ~~~~~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l----------------------~~~~~~~~~~~~  187 (412)
                      ...+++.++...+++|++.+.||+|+||.||+|...+|+.||||++                      +|+++.....++
T Consensus        17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~   96 (326)
T 3uim_A           17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC   96 (326)
T ss_dssp             CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEE
T ss_pred             cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEE
Confidence            3468889999999999999999999999999999888999999965                      466777777788


Q ss_pred             ecCceEEEEEEeccCCceeeeeccCcc-cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEe
Q 042435          188 YSPQCMFFIYEYMERGSLFCVLRDDDE-AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVA  266 (412)
Q Consensus       188 ~~~~~~~lv~ey~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~  266 (412)
                      ...+..++||||+++|+|.+++..... ...++|..+..++.|++.||+|||+++.++|+||||||+|||++.++.+||+
T Consensus        97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~  176 (326)
T 3uim_A           97 MTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVG  176 (326)
T ss_dssp             CCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEEC
T ss_pred             ecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEec
Confidence            888999999999999999999976542 3359999999999999999999999877899999999999999999999999


Q ss_pred             ecCCccccCCCCCC-cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccccccc----------CCC
Q 042435          267 DFGTVRLLDVDSSN-RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS----------SSG  335 (412)
Q Consensus       267 DfGla~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~----------~~~  335 (412)
                      |||+++........ .....||+.|+|||++.+..++.++||||||+++|||+||+.||+.......          ...
T Consensus       177 Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~  256 (326)
T 3uim_A          177 DFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLL  256 (326)
T ss_dssp             CCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTT
T ss_pred             cCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHh
Confidence            99999876543322 2345699999999999888899999999999999999999999963211100          000


Q ss_pred             CcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          336 PKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                      .........+.......   .......+.+++.+||+.||++|||+.|++++|++....
T Consensus       257 ~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~~~  312 (326)
T 3uim_A          257 KEKKLEALVDVDLQGNY---KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLA  312 (326)
T ss_dssp             SSCCSTTSSCTTCTTSC---CHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSSCS
T ss_pred             hchhhhhhcChhhcccc---CHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcchh
Confidence            01111111222222221   234445689999999999999999999999999986543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=5.4e-44  Score=366.79  Aligned_cols=232  Identities=21%  Similarity=0.257  Sum_probs=189.7

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEe
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|.+                     +|+++.....++.+.+..|+||||
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~  235 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  235 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence            36899999999999999999977 47999999954                     688999999999999999999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC--CcEEEeecCCccccCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN--LEAFVADFGTVRLLDVD  277 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~--~~~kl~DfGla~~~~~~  277 (412)
                      |++|+|.+++.....  .+++.+...++.||+.||+|||++   +|+||||||+|||++.+  +.+||+|||+|+.+...
T Consensus       236 ~~gg~L~~~i~~~~~--~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~  310 (573)
T 3uto_A          236 MSGGELFEKVADEHN--KMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK  310 (573)
T ss_dssp             CCCCBHHHHHTCTTS--CEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTT
T ss_pred             cCCCcHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEccCC
Confidence            999999998865432  488999999999999999999999   99999999999999854  89999999999987543


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                      . .....+||+.|||||++.+..|+.++||||+||++|||++|+.||...       .....+..+.......+. ....
T Consensus       311 ~-~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~-------~~~~~~~~i~~~~~~~~~-~~~~  381 (573)
T 3uto_A          311 Q-SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE-------NDDETLRNVKSCDWNMDD-SAFS  381 (573)
T ss_dssp             S-EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS-------SHHHHHHHHHTTCCCCCS-GGGT
T ss_pred             C-ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-------CHHHHHHHHHhCCCCCCc-cccc
Confidence            3 234458999999999999999999999999999999999999999732       111222222222222111 1111


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .....+.+|+.+||+.||++|||+.|+++|
T Consensus       382 ~~s~~~~dli~~~L~~dp~~R~t~~e~l~H  411 (573)
T 3uto_A          382 GISEDGKDFIRKLLLADPNTRMTIHQALEH  411 (573)
T ss_dssp             TSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            122347899999999999999999999885

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=1.3e-43  Score=339.26  Aligned_cols=258  Identities=31%  Similarity=0.427  Sum_probs=203.1

Q ss_pred             cccHHHHHHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEec---------------------cCCccccceEEEecC
Q 042435          132 KILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL---------------------HHSETEDSAFVVYSP  190 (412)
Q Consensus       132 ~~~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~  190 (412)
                      ++.+.++..++++|++.+.||+|+||.||+|.+.+++.||||++                     +|+++......+...
T Consensus        28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  107 (321)
T 2qkw_B           28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDER  107 (321)
T ss_dssp             --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCT
T ss_pred             eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence            45667778899999999999999999999999988999999964                     577777777888888


Q ss_pred             ceEEEEEEeccCCceeeeeccCcc-cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDE-AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      +..++||||+++|+|.+++..... ...++|..++.++.|++.||+|||++   +|+||||||+||+++.++.+||+|||
T Consensus       108 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg  184 (321)
T 2qkw_B          108 NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFG  184 (321)
T ss_dssp             TCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEECCCT
T ss_pred             CeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEEeecc
Confidence            999999999999999999876532 23589999999999999999999998   99999999999999999999999999


Q ss_pred             CccccCCCC--CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCC--------Ccch
Q 042435          270 TVRLLDVDS--SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSG--------PKIM  339 (412)
Q Consensus       270 la~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~--------~~~~  339 (412)
                      +++......  .......||+.|+|||++.+..++.++||||||+++|||+||+.||...........        ....
T Consensus       185 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  264 (321)
T 2qkw_B          185 ISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQ  264 (321)
T ss_dssp             TCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTC
T ss_pred             cccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhcccccc
Confidence            998654322  122344689999999999888999999999999999999999999863211000000        0000


Q ss_pred             hhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCC
Q 042435          340 LIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMK  395 (412)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  395 (412)
                      +.+.+++.....   ........+.+++.+||+.||++|||+.|++++|+.+....
T Consensus       265 ~~~~~~~~~~~~---~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~~  317 (321)
T 2qkw_B          265 LEQIVDPNLADK---IRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQ  317 (321)
T ss_dssp             CCSSSSSSCTTC---SCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred             HHHhcChhhccc---cCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhcc
Confidence            001111111111   12344556889999999999999999999999999876543

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=3.3e-43  Score=335.10  Aligned_cols=245  Identities=28%  Similarity=0.395  Sum_probs=186.6

Q ss_pred             HHHHHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEec-----------------------cCCccccceEEEecCce
Q 042435          136 ENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-----------------------HHSETEDSAFVVYSPQC  192 (412)
Q Consensus       136 ~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~  192 (412)
                      .++....++|++.+.||+|+||.||+|+. +|+.||||.+                       +|+++......+...+.
T Consensus        30 ~~~~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  108 (309)
T 3p86_A           30 DDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPN  108 (309)
T ss_dssp             --CBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTC
T ss_pred             ccccCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCc
Confidence            33444467899999999999999999987 6889999964                       46777777888888889


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCC--cEEeCCCCCCEEecCCCcEEEeecCC
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS--IVHRDISSNNILLNSNLEAFVADFGT  270 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~--ivHrDlkp~NILl~~~~~~kl~DfGl  270 (412)
                      .++||||+++|+|.+++........+++..++.++.|++.||+|||++   +  |+||||||+||+++.++.+||+|||+
T Consensus       109 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~  185 (309)
T 3p86_A          109 LSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVCDFGL  185 (309)
T ss_dssp             CEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEECCCC-
T ss_pred             eEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEECCCCC
Confidence            999999999999999998765444599999999999999999999998   7  99999999999999999999999999


Q ss_pred             ccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCC
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP  350 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (412)
                      ++.............||+.|+|||++.+..++.++||||||+++|||+||+.||...       ................
T Consensus       186 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~-------~~~~~~~~~~~~~~~~  258 (309)
T 3p86_A          186 SRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNL-------NPAQVVAAVGFKCKRL  258 (309)
T ss_dssp             ----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTS-------CHHHHHHHHHHSCCCC
T ss_pred             CccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-------CHHHHHHHHHhcCCCC
Confidence            986544433344567999999999999999999999999999999999999998732       1111111111111111


Q ss_pred             ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       351 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                      ..+...   ...+.+++.+||+.||++|||+.|+++.|+.+...
T Consensus       259 ~~~~~~---~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~  299 (309)
T 3p86_A          259 EIPRNL---NPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKS  299 (309)
T ss_dssp             CCCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-
T ss_pred             CCCccC---CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            212222   22378899999999999999999999999887653

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=1.3e-42  Score=329.03  Aligned_cols=230  Identities=23%  Similarity=0.315  Sum_probs=189.8

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEecCceEEEEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ..++|++.+.||+|+||+||+|.. .+++.||||.+                     +|+++......+...+..++|||
T Consensus        18 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   97 (297)
T 3fxz_A           18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   97 (297)
T ss_dssp             GGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEE
Confidence            346799999999999999999976 57999999964                     57888888888888999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++|+|.+++...    .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++......
T Consensus        98 ~~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  170 (297)
T 3fxz_A           98 YLAGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ  170 (297)
T ss_dssp             CCTTCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred             CCCCCCHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCCcc
Confidence            99999999998754    389999999999999999999999   99999999999999999999999999998776655


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhcc-CCccchhhH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRL-SPPINQKII  357 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  357 (412)
                      .......||+.|+|||++.+..++.++|||||||++|||+||+.||....       ............. ....+.   
T Consensus       171 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-------~~~~~~~~~~~~~~~~~~~~---  240 (297)
T 3fxz_A          171 SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNEN-------PLRALYLIATNGTPELQNPE---  240 (297)
T ss_dssp             CCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSC-------HHHHHHHHHHHCSCCCSCGG---
T ss_pred             cccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-------HHHHHHHHHhCCCCCCCCcc---
Confidence            55556689999999999999999999999999999999999999986321       1111111111111 111111   


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .....+.+++.+||+.||++|||++|++++
T Consensus       241 ~~~~~~~~li~~~l~~dp~~Rps~~ell~h  270 (297)
T 3fxz_A          241 KLSAIFRDFLNRCLEMDVEKRGSAKELLQH  270 (297)
T ss_dssp             GSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             ccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence            122347889999999999999999999875

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=2.2e-42  Score=331.11  Aligned_cols=241  Identities=23%  Similarity=0.328  Sum_probs=195.7

Q ss_pred             ccccHHHHHHhhcC----------cccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------cCC
Q 042435          131 GKILYENLIDATEY----------FHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------HHS  178 (412)
Q Consensus       131 ~~~~~~~l~~~~~~----------f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------~~~  178 (412)
                      +.++++++..+++.          |+..+.||+|+||.||+|... +|+.||||.+                     +|+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~  102 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF  102 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence            46788898888864          777889999999999999875 7999999964                     467


Q ss_pred             ccccceEEEecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec
Q 042435          179 ETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN  258 (412)
Q Consensus       179 ~~~~~~~~~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~  258 (412)
                      ++......+...+..++||||+++|+|.+++...    .+++..+..++.|++.||+|||+.   +|+||||||+||+++
T Consensus       103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~----~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~  175 (321)
T 2c30_A          103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV----RLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSILLT  175 (321)
T ss_dssp             TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEC
T ss_pred             CcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEC
Confidence            7777777888889999999999999999988654    489999999999999999999998   999999999999999


Q ss_pred             CCCcEEEeecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcc
Q 042435          259 SNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKI  338 (412)
Q Consensus       259 ~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~  338 (412)
                      .++.+||+|||+++.............||+.|+|||++.+..++.++||||||+++|||++|+.||....       . .
T Consensus       176 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~-------~-~  247 (321)
T 2c30_A          176 LDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDS-------P-V  247 (321)
T ss_dssp             TTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC-------H-H
T ss_pred             CCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-------H-H
Confidence            9999999999999876654444455689999999999999999999999999999999999999986321       1 1


Q ss_pred             hhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          339 MLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .....+.....+.. .........+.+++.+||+.||++|||+.|++++
T Consensus       248 ~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  295 (321)
T 2c30_A          248 QAMKRLRDSPPPKL-KNSHKVSPVLRDFLERMLVRDPQERATAQELLDH  295 (321)
T ss_dssp             HHHHHHHHSSCCCC-TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             HHHHHHhcCCCCCc-CccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            11111222111111 1111122347889999999999999999999986

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=5.5e-43  Score=331.16  Aligned_cols=239  Identities=24%  Similarity=0.357  Sum_probs=184.4

Q ss_pred             hcCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEec----CceEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYS----PQCMFFIY  197 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~----~~~~~lv~  197 (412)
                      .++|++.+.||+|+||+||+|.. +++.||||.+                    +|+++......+..    ....++||
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~   85 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLIT   85 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccccchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEeh
Confidence            46899999999999999999988 7899999964                    57777776655332    45689999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHH--------hCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH--------HDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH--------~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      ||+++|+|.++++..    .+++..+..++.|++.||+|||        +.   +|+||||||+|||++.++.+||+|||
T Consensus        86 e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg  158 (301)
T 3q4u_A           86 HYHEMGSLYDYLQLT----TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQCCIADLG  158 (301)
T ss_dssp             CCCTTCBHHHHHTTC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCEEECCCT
T ss_pred             hhccCCCHHHHHhhc----ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCEEEeeCC
Confidence            999999999999654    4899999999999999999999        66   99999999999999999999999999


Q ss_pred             CccccCCCCCC----cccccccccccccccccCc------ccCcccccHHHHHHHHHHHhC----------CCCcccccc
Q 042435          270 TVRLLDVDSSN----RTLQAGTYGYIALELVYTM------VVTEKCVIYSFGVVALEVLMG----------THPGELLLS  329 (412)
Q Consensus       270 la~~~~~~~~~----~~~~~gt~~y~aPE~~~~~------~~s~ksDv~S~Gvil~elltg----------~~P~~~~~~  329 (412)
                      +++........    .....||+.|+|||++.+.      .++.++|||||||++|||+||          +.||.....
T Consensus       159 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~  238 (301)
T 3q4u_A          159 LAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVP  238 (301)
T ss_dssp             TCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSC
T ss_pred             CeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCC
Confidence            99765443322    1234799999999999876      566799999999999999999          667652211


Q ss_pred             cccCCCCcchhhHHhh-hccCCccch--hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          330 LSSSSGPKIMLIDILY-QRLSPPINQ--KIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       330 ~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                         ............. ....+..+.  ........+.+++.+||+.||++|||+.|+++.|+++
T Consensus       239 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          239 ---NDPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             ---SSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             ---CCcchhhhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence               0011111111111 111111111  1123345688999999999999999999999999875

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=9.6e-42  Score=323.85  Aligned_cols=254  Identities=28%  Similarity=0.433  Sum_probs=201.3

Q ss_pred             ccccHHHHHHhhcCcccc------eeeeecCceEEEEEEeCCCcEEEEEec-------------------------cCCc
Q 042435          131 GKILYENLIDATEYFHIR------YCIGTGGYDSVYKAELPDGKVVALKKL-------------------------HHSE  179 (412)
Q Consensus       131 ~~~~~~~l~~~~~~f~~~------~~lG~G~~g~Vy~~~~~~~~~vAvK~l-------------------------~~~~  179 (412)
                      ..+++.++..++++|...      +.||+|+||.||+|.. +++.||+|++                         +|++
T Consensus        13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~   91 (307)
T 2nru_A           13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN   91 (307)
T ss_dssp             EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred             CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence            367899999999999887      8999999999999987 6889999964                         4667


Q ss_pred             cccceEEEecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC
Q 042435          180 TEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS  259 (412)
Q Consensus       180 ~~~~~~~~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~  259 (412)
                      +.....++...+..++||||+++|+|.+++........++|..+..++.|++.||+|||++   +++||||||+||+++.
T Consensus        92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~  168 (307)
T 2nru_A           92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDE  168 (307)
T ss_dssp             BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECT
T ss_pred             eEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEcC
Confidence            7777777888889999999999999999987654444699999999999999999999999   9999999999999999


Q ss_pred             CCcEEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccC----
Q 042435          260 NLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSS----  333 (412)
Q Consensus       260 ~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~----  333 (412)
                      ++.+||+|||+++........  .....||+.|+|||.+.+ .++.++||||||+++|||++|+.||.........    
T Consensus       169 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~  247 (307)
T 2nru_A          169 AFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIK  247 (307)
T ss_dssp             TCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHH
T ss_pred             CCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHH
Confidence            999999999999865443222  233568999999998865 5889999999999999999999998743211000    


Q ss_pred             ---CCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          334 ---SGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       334 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                         ......+.+.++....    .........+.+++.+||+.||++|||+.|++++|+++..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          248 EEIEDEEKTIEDYIDKKMN----DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             HHHHTTSCCHHHHSCSSCS----CCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred             HHhhhhhhhhhhhcccccc----ccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence               0000011122222221    1122334458899999999999999999999999998753

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=3e-42  Score=336.59  Aligned_cols=237  Identities=22%  Similarity=0.332  Sum_probs=191.9

Q ss_pred             hcCcccceeeeecCceEEEEEEe--------CCCcEEEEEec-----------------------cCCccccceEEEecC
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL--------PDGKVVALKKL-----------------------HHSETEDSAFVVYSP  190 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~--------~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~  190 (412)
                      .++|++.+.||+|+||.||+|..        .++..||||.+                       +|+++......+...
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  159 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  159 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence            46799999999999999999975        24568999965                       578888888888889


Q ss_pred             ceEEEEEEeccCCceeeeeccCcc-------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDE-------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL  257 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl  257 (412)
                      +..++||||+++|+|.+++.....             ...+++..++.++.|++.||+|||++   +|+||||||+|||+
T Consensus       160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll  236 (370)
T 2psq_A          160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLV  236 (370)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchhhEEE
Confidence            999999999999999999875431             12489999999999999999999999   99999999999999


Q ss_pred             cCCCcEEEeecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCC
Q 042435          258 NSNLEAFVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSS  334 (412)
Q Consensus       258 ~~~~~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~  334 (412)
                      +.++.+||+|||+++.......  ......+|+.|+|||++.+..++.++|||||||++|||+| |+.||...       
T Consensus       237 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~-------  309 (370)
T 2psq_A          237 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI-------  309 (370)
T ss_dssp             CTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC-------
T ss_pred             CCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCC-------
Confidence            9999999999999986644322  2233457889999999999999999999999999999999 99998732       


Q ss_pred             CCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          335 GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                       ....+...+........+...   ...+.+++.+||+.||++|||+.|+++.|+++.
T Consensus       310 -~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il  363 (370)
T 2psq_A          310 -PVEELFKLLKEGHRMDKPANC---TNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL  363 (370)
T ss_dssp             -CGGGHHHHHHTTCCCCCCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHhcCCCCCCCCCC---CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence             111222333332222222222   224788999999999999999999999998864

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.3e-41  Score=323.76  Aligned_cols=238  Identities=25%  Similarity=0.407  Sum_probs=191.8

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEe
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      .++|.+.+.||+|+||+||+|.. .+++.||+|++                     +|+++......+...+..++||||
T Consensus         9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   88 (310)
T 3s95_A            9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY   88 (310)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence            35788999999999999999987 46899999953                     688888888889999999999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++|+|.+++.....  .+++.++..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++.......
T Consensus        89 ~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  163 (310)
T 3s95_A           89 IKGGTLRGIIKSMDS--QYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKT  163 (310)
T ss_dssp             CTTCBHHHHHHHCCT--TSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC----
T ss_pred             cCCCcHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceecccccc
Confidence            999999999976432  589999999999999999999999   999999999999999999999999999987643322


Q ss_pred             Cc--------------ccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhh
Q 042435          280 NR--------------TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY  345 (412)
Q Consensus       280 ~~--------------~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~  345 (412)
                      ..              ....||+.|+|||++.+..++.++||||||+++|||++|..|+.......  ............
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~--~~~~~~~~~~~~  241 (310)
T 3s95_A          164 QPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRT--MDFGLNVRGFLD  241 (310)
T ss_dssp             ----------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBC--TTSSBCHHHHHH
T ss_pred             cccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhH--HHHhhhhhcccc
Confidence            11              14579999999999999999999999999999999999999986322111  111111222222


Q ss_pred             hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      .......+       ..+.+++.+||+.||++|||+.|+++.|+.+..
T Consensus       242 ~~~~~~~~-------~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~  282 (310)
T 3s95_A          242 RYCPPNCP-------PSFFPITVRCCDLDPEKRPSFVKLEHWLETLRM  282 (310)
T ss_dssp             HTCCTTCC-------TTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ccCCCCCC-------HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence            22222211       127789999999999999999999999988754

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=6.8e-42  Score=318.57  Aligned_cols=237  Identities=21%  Similarity=0.284  Sum_probs=191.7

Q ss_pred             hcCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEecc
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      .++|++.+.||+|+||.||+|...++..||+|.+                    +|+++......+...+..++||||++
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   86 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYIS   86 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred             hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccC
Confidence            4678999999999999999999988889999964                    56777777888888889999999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC-
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-  280 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~-  280 (412)
                      +|+|.+++....  ..+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++........ 
T Consensus        87 ~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~  161 (268)
T 3sxs_A           87 NGCLLNYLRSHG--KGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVS  161 (268)
T ss_dssp             TCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEE
T ss_pred             CCcHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchhhhhc
Confidence            999999987643  2489999999999999999999999   9999999999999999999999999999865443221 


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      .....+|+.|+|||.+.+..++.++||||||+++|||+| |+.||....       ... .............+...   
T Consensus       162 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~-------~~~-~~~~~~~~~~~~~~~~~---  230 (268)
T 3sxs_A          162 SVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYT-------NSE-VVLKVSQGHRLYRPHLA---  230 (268)
T ss_dssp             CCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSC-------HHH-HHHHHHTTCCCCCCTTS---
T ss_pred             ccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccC-------hHH-HHHHHHcCCCCCCCCcC---
Confidence            223456778999999998889999999999999999999 999986321       111 11111111111111111   


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                      ...+.+++.+||+.||++|||+.|++++|+.+.+.
T Consensus       231 ~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (268)
T 3sxs_A          231 SDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK  265 (268)
T ss_dssp             CHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred             hHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence            12378899999999999999999999999998764

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=1.3e-41  Score=327.75  Aligned_cols=228  Identities=22%  Similarity=0.305  Sum_probs=188.1

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      .++|++.+.||+|+||.||+|+.. +|+.||+|.+                        +|+++......+...+..++|
T Consensus         4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv   83 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence            367999999999999999999874 6999999965                        467777778888899999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++....
T Consensus        84 ~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~  157 (337)
T 1o6l_A           84 MEYANGGELFFHLSRER---VFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS  157 (337)
T ss_dssp             EECCTTCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred             EeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhccc
Confidence            99999999998886543   589999999999999999999999   999999999999999999999999999986544


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .........||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  ...
T Consensus       158 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-------~~~~~~~~i~~~~~~~p--~~~  228 (337)
T 1o6l_A          158 DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-------DHERLFELILMEEIRFP--RTL  228 (337)
T ss_dssp             TTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHCCCCCC--TTS
T ss_pred             CCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCC-------CHHHHHHHHHcCCCCCC--CCC
Confidence            444445568999999999999999999999999999999999999998632       11111222222222221  111


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                         ...+.+++.+||+.||++||     +++|++++
T Consensus       229 ---s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h  261 (337)
T 1o6l_A          229 ---SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             ---CHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             ---CHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence               22378899999999999999     89999875

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=3.9e-42  Score=329.90  Aligned_cols=238  Identities=27%  Similarity=0.361  Sum_probs=189.7

Q ss_pred             cCcccceeeeecCceEEEEEEeC----CCcEEEEEec----------------------cCCccccceEEEecCceEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP----DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~----~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ++|++.+.||+|+||.||+|.+.    .+..||||.+                      +|+++.....++...+..++|
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  128 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV  128 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEE
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEE
Confidence            56888999999999999999874    3556999965                      577788888888888999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++|+|.++++....  .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....
T Consensus       129 ~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  203 (325)
T 3kul_A          129 TEYMENGSLDTFLRTHDG--QFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLED  203 (325)
T ss_dssp             EECCTTCBHHHHHHTTTT--CSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEECC-
T ss_pred             eeCCCCCcHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCccccccc
Confidence            999999999999965432  589999999999999999999999   999999999999999999999999999987654


Q ss_pred             CCCCc---ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          277 DSSNR---TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       277 ~~~~~---~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      .....   ....+|+.|+|||++.+..++.++||||||+++|||++ |+.||...        ........+......+.
T Consensus       204 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~--------~~~~~~~~~~~~~~~~~  275 (325)
T 3kul_A          204 DPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNM--------TNRDVISSVEEGYRLPA  275 (325)
T ss_dssp             ---CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTS--------CHHHHHHHHHTTCCCCC
T ss_pred             CccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccC--------CHHHHHHHHHcCCCCCC
Confidence            32221   22346778999999998899999999999999999999 99998632        11112222222222222


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKK  396 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  396 (412)
                      +...   ...+.+++.+||+.||++|||+.|+++.|+++....+
T Consensus       276 ~~~~---~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~  316 (325)
T 3kul_A          276 PMGC---PHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPE  316 (325)
T ss_dssp             CTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC
T ss_pred             CCCc---CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCcc
Confidence            2222   2247889999999999999999999999998865544

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.3e-41  Score=334.29  Aligned_cols=235  Identities=21%  Similarity=0.328  Sum_probs=186.5

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-------------------------cCCccccceEEEecCceEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      .++|++.++||+|+||.||+|+.. +++.||+|.+                         +|+++......+.+.+..++
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  130 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF  130 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence            467999999999999999999875 5889999965                         46777777788888999999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||||+++|+|..++....   .+++..+..++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+++...
T Consensus       131 V~E~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~~~  204 (396)
T 4dc2_A          131 VIEYVNGGDLMFHMQRQR---KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL  204 (396)
T ss_dssp             EEECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred             EEEcCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeeecc
Confidence            999999999998887543   589999999999999999999999   99999999999999999999999999998644


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCC-Ccc-hhhHHhhhccCCccc
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSG-PKI-MLIDILYQRLSPPIN  353 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~  353 (412)
                      .........+||+.|+|||++.+..++.++|||||||++|||++|+.||........... ... ....+.......+  
T Consensus       205 ~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p--  282 (396)
T 4dc2_A          205 RPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIP--  282 (396)
T ss_dssp             CTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCC--
T ss_pred             cCCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCC--
Confidence            444445567899999999999999999999999999999999999999963211110000 111 1122222222221  


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCCH------HHHHHH
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPTM------QRISQE  387 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~------~evl~~  387 (412)
                      ...   ...+.+++.+||+.||++||++      .|++++
T Consensus       283 ~~~---s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~H  319 (396)
T 4dc2_A          283 RSL---SVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH  319 (396)
T ss_dssp             TTS---CHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHS
T ss_pred             CcC---CHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcC
Confidence            221   2237889999999999999985      666654

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=3.7e-42  Score=333.70  Aligned_cols=228  Identities=23%  Similarity=0.346  Sum_probs=183.6

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-------------------------cCCccccceEEEecCceEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      .++|++.+.||+|+||.||+|+.. +|+.||||.+                         +|+++......+.+.+..++
T Consensus        22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  101 (353)
T 3txo_A           22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF  101 (353)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence            478999999999999999999874 6899999964                         47788888888889999999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++...
T Consensus       102 v~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~~~  175 (353)
T 3txo_A          102 VMEFVNGGDLMFHIQKSR---RFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI  175 (353)
T ss_dssp             EEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred             EEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceeecc
Confidence            999999999999887543   589999999999999999999999   99999999999999999999999999998654


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      .........+||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  ..
T Consensus       176 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-------~~~~~~~~i~~~~~~~p--~~  246 (353)
T 3txo_A          176 CNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAE-------NEDDLFEAILNDEVVYP--TW  246 (353)
T ss_dssp             C---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHCCCCCC--TT
T ss_pred             cCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCC-------CHHHHHHHHHcCCCCCC--CC
Confidence            4444445568999999999999889999999999999999999999999732       11222233333333222  11


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCH------HHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTM------QRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~------~evl~~  387 (412)
                      .   ...+.+++.+||+.||++||++      .|++++
T Consensus       247 ~---~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~h  281 (353)
T 3txo_A          247 L---HEDATGILKSFMTKNPTMRLGSLTQGGEHAILRH  281 (353)
T ss_dssp             S---CHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTS
T ss_pred             C---CHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhC
Confidence            1   1237789999999999999998      777653

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=4.7e-42  Score=328.81  Aligned_cols=248  Identities=22%  Similarity=0.329  Sum_probs=189.3

Q ss_pred             hhcCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecC----ceEEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSP----QCMFFI  196 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~----~~~~lv  196 (412)
                      ..++|++.+.||+|+||.||+|++. ++.||||++                    +|+++......+...    ...++|
T Consensus        22 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv  100 (322)
T 3soc_A           22 QSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI  100 (322)
T ss_dssp             TTEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred             chhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence            3467999999999999999999885 799999964                    577777777776653    347999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhC-------CCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHD-------CTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~-------~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      |||+++|+|.++++..    .++|..+..++.|++.||+|||+.       +.++|+||||||+|||++.++.+||+|||
T Consensus       101 ~e~~~~g~L~~~l~~~----~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg  176 (322)
T 3soc_A          101 TAFHEKGSLSDFLKAN----VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFG  176 (322)
T ss_dssp             EECCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCT
T ss_pred             EecCCCCCHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCC
Confidence            9999999999999754    389999999999999999999975       23489999999999999999999999999


Q ss_pred             CccccCCCCC--CcccccccccccccccccC-----cccCcccccHHHHHHHHHHHhCCCCccccccccc--------CC
Q 042435          270 TVRLLDVDSS--NRTLQAGTYGYIALELVYT-----MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SS  334 (412)
Q Consensus       270 la~~~~~~~~--~~~~~~gt~~y~aPE~~~~-----~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~  334 (412)
                      +++.......  ......||+.|+|||++.+     ..++.++|||||||++|||+||+.||........        ..
T Consensus       177 ~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~  256 (322)
T 3soc_A          177 LALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQH  256 (322)
T ss_dssp             TCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSS
T ss_pred             cccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccC
Confidence            9987654332  2234579999999999876     4567789999999999999999999864211100        00


Q ss_pred             CCcchhhHHh-hhccCCccchh--hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          335 GPKIMLIDIL-YQRLSPPINQK--IIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       335 ~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      .......+.. .....+.....  .......+.+++.+||+.||++|||+.|+++.|+++..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~  318 (322)
T 3soc_A          257 PSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQR  318 (322)
T ss_dssp             CCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence            0111111111 11222211111  11233458899999999999999999999999988753

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=4.2e-42  Score=336.42  Aligned_cols=236  Identities=22%  Similarity=0.303  Sum_probs=190.9

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCceEEEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ..++|.+.+.||+|+||.||+|.+. +++.||||.+                      +|+++.....++...+..++||
T Consensus       112 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  191 (377)
T 3cbl_A          112 NHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVM  191 (377)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             chHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEE
Confidence            3467899999999999999999885 7899999964                      4677777788888888999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.++++...  ..+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.....
T Consensus       192 e~~~~g~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~  266 (377)
T 3cbl_A          192 ELVQGGDFLTFLRTEG--ARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEADG  266 (377)
T ss_dssp             ECCTTCBHHHHHHHHG--GGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECTTS
T ss_pred             EcCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceecCCC
Confidence            9999999999987543  2589999999999999999999999   9999999999999999999999999999864332


Q ss_pred             CCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          278 SSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       278 ~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      ...  .....+++.|+|||.+.+..++.++|||||||++|||+| |..||....        .....+.+......+.+.
T Consensus       267 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~  338 (377)
T 3cbl_A          267 VYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLS--------NQQTREFVEKGGRLPCPE  338 (377)
T ss_dssp             EEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSC--------HHHHHHHHHTTCCCCCCT
T ss_pred             ceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--------HHHHHHHHHcCCCCCCCC
Confidence            111  112235778999999998899999999999999999998 999987321        112223333332222222


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ...   ..+.+++.+||+.||++|||+.++++.|+++.
T Consensus       339 ~~~---~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~  373 (377)
T 3cbl_A          339 LCP---DAVFRLMEQCWAYEPGQRPSFSTIYQELQSIR  373 (377)
T ss_dssp             TCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCC---HHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence            222   23788999999999999999999999998764

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=9.5e-42  Score=322.54  Aligned_cols=241  Identities=24%  Similarity=0.300  Sum_probs=187.7

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      .++|++.+.||+|+||.||+|.. .+++.||+|.+                        +|+++......+...+..++|
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv   89 (294)
T 4eqm_A           10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV   89 (294)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence            35799999999999999999976 46899999964                        577788888888889999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++....
T Consensus        90 ~e~~~g~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  163 (294)
T 4eqm_A           90 MEYIEGPTLSEYIESHG---PLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSE  163 (294)
T ss_dssp             EECCCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC--
T ss_pred             EeCCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCcccccc
Confidence            99999999999987543   589999999999999999999999   999999999999999999999999999987654


Q ss_pred             CCC-CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          277 DSS-NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       277 ~~~-~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ... ......||+.|+|||.+.+..++.++||||||+++|||+||+.||....       ....................
T Consensus       164 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~-------~~~~~~~~~~~~~~~~~~~~  236 (294)
T 4eqm_A          164 TSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGET-------AVSIAIKHIQDSVPNVTTDV  236 (294)
T ss_dssp             -----------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSC-------HHHHHHHHHSSCCCCHHHHS
T ss_pred             ccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC-------hHHHHHHHhhccCCCcchhc
Confidence            322 2234569999999999999999999999999999999999999987321       11111111111111100000


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCC-CHHHHHHHHhcCCCCC
Q 042435          356 IIQDIILVSTIALACLRSKPKSRP-TMQRISQELEGKTPMK  395 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RP-s~~evl~~L~~~~~~~  395 (412)
                      .......+.+++.+||+.||++|| +++++.+.|+......
T Consensus       237 ~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~  277 (294)
T 4eqm_A          237 RKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHEN  277 (294)
T ss_dssp             CTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSS
T ss_pred             ccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhc
Confidence            011123478899999999999998 9999999999886543

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=9.9e-42  Score=327.53  Aligned_cols=228  Identities=22%  Similarity=0.339  Sum_probs=187.5

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCceEEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ..++|++.+.||+|+||.||+|.. .+|+.||||++                       +|+++.....++...+..++|
T Consensus        13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   92 (328)
T 3fe3_A           13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI   92 (328)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence            346899999999999999999987 67999999964                       578888888888899999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++|+|.+++....   .+++.....++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++....
T Consensus        93 ~e~~~~~~L~~~l~~~~---~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  166 (328)
T 3fe3_A           93 MEYASGGEVFDYLVAHG---RMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFTV  166 (328)
T ss_dssp             ECCCTTCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSS
T ss_pred             EECCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceecCC
Confidence            99999999999886543   589999999999999999999999   999999999999999999999999999986654


Q ss_pred             CCCCcccccccccccccccccCcccC-cccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVT-EKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s-~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      .. ......||+.|+|||++.+..++ .++|||||||++|||++|+.||...       ........+.......+  ..
T Consensus       167 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~-------~~~~~~~~i~~~~~~~p--~~  236 (328)
T 3fe3_A          167 GG-KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQ-------NLKELRERVLRGKYRIP--FY  236 (328)
T ss_dssp             SC-GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHCCCCCC--TT
T ss_pred             CC-ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCC-------CHHHHHHHHHhCCCCCC--CC
Confidence            32 33456799999999999887765 7999999999999999999999732       11111122222222221  11


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .   ...+.+++.+||+.||++|||++|++++
T Consensus       237 ~---s~~~~~li~~~L~~dP~~R~t~~eil~h  265 (328)
T 3fe3_A          237 M---STDCENLLKRFLVLNPIKRGTLEQIMKD  265 (328)
T ss_dssp             S---CHHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred             C---CHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            1   2237789999999999999999999876

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.9e-42  Score=328.70  Aligned_cols=224  Identities=21%  Similarity=0.226  Sum_probs=178.8

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.++||+|+||+||+|... +|+.||||++                        +|+++......+...+..++||
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            67999999999999999999875 7999999975                        5778888888888999999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+ +++|.+++....  ..++|..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....
T Consensus       137 e~~-~~~L~~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~  210 (311)
T 3p1a_A          137 ELC-GPSLQQHCEAWG--ASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTA  210 (311)
T ss_dssp             ECC-CCBHHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC--
T ss_pred             ecc-CCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeecccC
Confidence            999 679988876543  2599999999999999999999998   9999999999999999999999999999865433


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                      . ......||+.|+|||++.+ .++.++|||||||++|||++|..|+.....          ...+......+.   ...
T Consensus       211 ~-~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~----------~~~~~~~~~~~~---~~~  275 (311)
T 3p1a_A          211 G-AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEG----------WQQLRQGYLPPE---FTA  275 (311)
T ss_dssp             -----CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHH----------HHHHTTTCCCHH---HHT
T ss_pred             C-CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccH----------HHHHhccCCCcc---ccc
Confidence            2 2334569999999998876 789999999999999999999766542111          111111111111   111


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .....+.+++.+||+.||++|||++|++++
T Consensus       276 ~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  305 (311)
T 3p1a_A          276 GLSSELRSVLVMMLEPDPKLRATAEALLAL  305 (311)
T ss_dssp             TSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             CCCHHHHHHHHHHcCCChhhCcCHHHHHhC
Confidence            122348899999999999999999999874

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.6e-41  Score=319.82  Aligned_cols=229  Identities=21%  Similarity=0.266  Sum_probs=177.8

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc--------------------------------------------
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH--------------------------------------------  176 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~--------------------------------------------  176 (412)
                      .++|++.+.||+|+||.||+|.. .+++.||||.++                                            
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            36799999999999999999976 468999999763                                            


Q ss_pred             ---CCccccceEEEec--CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCC
Q 042435          177 ---HSETEDSAFVVYS--PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDIS  251 (412)
Q Consensus       177 ---~~~~~~~~~~~~~--~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlk  251 (412)
                         |+++.....++..  .+..++||||+++|+|.+++...    .+++..+..++.|++.||+|||++   +|+|||||
T Consensus        92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlk  164 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLK----PLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIK  164 (298)
T ss_dssp             TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCC
T ss_pred             hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCC
Confidence               4455555555554  56889999999999999876543    489999999999999999999999   99999999


Q ss_pred             CCCEEecCCCcEEEeecCCccccCCCCCCcccccccccccccccccCcc---cCcccccHHHHHHHHHHHhCCCCccccc
Q 042435          252 SNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMV---VTEKCVIYSFGVVALEVLMGTHPGELLL  328 (412)
Q Consensus       252 p~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~s~ksDv~S~Gvil~elltg~~P~~~~~  328 (412)
                      |+||+++.++.+||+|||+++.............||+.|+|||.+.+..   ++.++|||||||++|||++|+.||....
T Consensus       165 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~  244 (298)
T 2zv2_A          165 PSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER  244 (298)
T ss_dssp             GGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             HHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc
Confidence            9999999999999999999987655444444567999999999997654   4788999999999999999999986321


Q ss_pred             ccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          329 SLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                             .......+.......+.....   ...+.+++.+||+.||++|||+.|++++
T Consensus       245 -------~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~R~s~~e~l~h  293 (298)
T 2zv2_A          245 -------IMCLHSKIKSQALEFPDQPDI---AEDLKDLITRMLDKNPESRIVVPEIKLH  293 (298)
T ss_dssp             -------HHHHHHHHHHCCCCCCSSSCC---CHHHHHHHHHHTCSCTTTSCCHHHHTTC
T ss_pred             -------HHHHHHHHhcccCCCCCcccc---CHHHHHHHHHHhhcChhhCCCHHHHhcC
Confidence                   011111112222221111111   2237889999999999999999999764

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=7.9e-42  Score=328.39  Aligned_cols=248  Identities=24%  Similarity=0.365  Sum_probs=188.5

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecC----ceEEE
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSP----QCMFF  195 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~----~~~~l  195 (412)
                      ...++|++.+.||+|+||.||+|+.. ++.||||.+                    +|+++......+...    ...++
T Consensus        34 ~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l  112 (337)
T 3mdy_A           34 TIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYL  112 (337)
T ss_dssp             THHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEE
T ss_pred             ccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEE
Confidence            44578999999999999999999885 899999964                    677887777776665    78999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCC-----CCCcEEeCCCCCCEEecCCCcEEEeecCC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC-----TPSIVHRDISSNNILLNSNLEAFVADFGT  270 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~-----~~~ivHrDlkp~NILl~~~~~~kl~DfGl  270 (412)
                      ||||+++|+|.++++..    .+++..+..++.|++.||+|||+++     .++|+||||||+|||++.++.+||+|||+
T Consensus       113 v~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~  188 (337)
T 3mdy_A          113 ITDYHENGSLYDYLKST----TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL  188 (337)
T ss_dssp             EECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred             EEeccCCCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCC
Confidence            99999999999999654    4899999999999999999999752     34899999999999999999999999999


Q ss_pred             ccccCCCCCC----cccccccccccccccccCcccCcc------cccHHHHHHHHHHHhCC----------CCccccccc
Q 042435          271 VRLLDVDSSN----RTLQAGTYGYIALELVYTMVVTEK------CVIYSFGVVALEVLMGT----------HPGELLLSL  330 (412)
Q Consensus       271 a~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~s~k------sDv~S~Gvil~elltg~----------~P~~~~~~~  330 (412)
                      ++........    .....||+.|+|||++.+...+.+      +|||||||++|||+||.          .||..... 
T Consensus       189 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~-  267 (337)
T 3mdy_A          189 AVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVP-  267 (337)
T ss_dssp             CEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSC-
T ss_pred             ceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcC-
Confidence            9765443222    124579999999999987766654      99999999999999994          44432110 


Q ss_pred             ccCCCCcchhhHHh-hhccCCccchh--hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCC
Q 042435          331 SSSSGPKIMLIDIL-YQRLSPPINQK--IIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMK  395 (412)
Q Consensus       331 ~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  395 (412)
                        ............ .....+..+..  .......+.+++.+||+.||++|||+.|++++|+++.+..
T Consensus       268 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~  333 (337)
T 3mdy_A          268 --SDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQ  333 (337)
T ss_dssp             --SSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             --CCCchhhhHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhc
Confidence              001111111111 11222222111  1234455889999999999999999999999999886543

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=3.6e-42  Score=333.96  Aligned_cols=245  Identities=21%  Similarity=0.283  Sum_probs=193.9

Q ss_pred             HHHHHHhhcCcccceeeeecCceEEEEEEe------CCCcEEEEEec-----------------------cCCccccceE
Q 042435          135 YENLIDATEYFHIRYCIGTGGYDSVYKAEL------PDGKVVALKKL-----------------------HHSETEDSAF  185 (412)
Q Consensus       135 ~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~------~~~~~vAvK~l-----------------------~~~~~~~~~~  185 (412)
                      ..+.....++|++.+.||+|+||.||+|.+      .+++.||||++                       +|+++.....
T Consensus        14 ~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~   93 (359)
T 3vhe_A           14 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG   93 (359)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             cccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeee
Confidence            455556778999999999999999999974      34689999975                       4677777777


Q ss_pred             EEecCc-eEEEEEEeccCCceeeeeccCcc--------------------------------------------------
Q 042435          186 VVYSPQ-CMFFIYEYMERGSLFCVLRDDDE--------------------------------------------------  214 (412)
Q Consensus       186 ~~~~~~-~~~lv~ey~~~gsL~~~l~~~~~--------------------------------------------------  214 (412)
                      .+...+ ..++||||+++|+|.+++.....                                                  
T Consensus        94 ~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (359)
T 3vhe_A           94 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSL  173 (359)
T ss_dssp             EECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------------------------------
T ss_pred             eeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccccc
Confidence            776654 48999999999999999876432                                                  


Q ss_pred             -------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC--
Q 042435          215 -------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS--  279 (412)
Q Consensus       215 -------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~--  279 (412)
                                   ...+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.......  
T Consensus       174 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  250 (359)
T 3vhe_A          174 SDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV  250 (359)
T ss_dssp             ----------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCE
T ss_pred             chhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeecccccch
Confidence                         11288999999999999999999999   999999999999999999999999999986644322  


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      ......||+.|+|||++.+..++.++||||||+++|||+| |+.||...       .........+........+.... 
T Consensus       251 ~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-  322 (359)
T 3vhe_A          251 RKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV-------KIDEEFCRRLKEGTRMRAPDYTT-  322 (359)
T ss_dssp             EC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC-------CCSHHHHHHHHHTCCCCCCTTCC-
T ss_pred             hccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCcc-------chhHHHHHHHHcCCCCCCCCCCC-
Confidence            2234568899999999999999999999999999999998 99998632       11222333333332222222222 


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                        ..+.+++.+||+.||++|||+.|++++|+++.
T Consensus       323 --~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~  354 (359)
T 3vhe_A          323 --PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL  354 (359)
T ss_dssp             --HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHccCChhhCCCHHHHHHHHHHHH
Confidence              23788999999999999999999999998764

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=4.4e-42  Score=334.60  Aligned_cols=240  Identities=14%  Similarity=0.195  Sum_probs=183.6

Q ss_pred             hhcCcccceeeeecCceEEEEEEeCC------CcEEEEEec--------------------------------cCCcccc
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELPD------GKVVALKKL--------------------------------HHSETED  182 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~~------~~~vAvK~l--------------------------------~~~~~~~  182 (412)
                      ..++|++.+.||+|+||.||+|.+.+      ++.||||.+                                +|+++..
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~  112 (364)
T 3op5_A           33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK  112 (364)
T ss_dssp             TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred             CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence            45689999999999999999998754      478999974                                2667777


Q ss_pred             ceEEEecC----ceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec
Q 042435          183 SAFVVYSP----QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN  258 (412)
Q Consensus       183 ~~~~~~~~----~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~  258 (412)
                      ....+...    ...++||||+ +++|.+++....  ..+++..++.++.|++.||+|||++   +|+||||||+|||++
T Consensus       113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~--~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill~  186 (364)
T 3op5_A          113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANA--KRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLLN  186 (364)
T ss_dssp             EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEE
T ss_pred             EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEEe
Confidence            66665543    5589999999 999999987642  2599999999999999999999999   999999999999998


Q ss_pred             --CCCcEEEeecCCccccCCCCCC-------cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccc
Q 042435          259 --SNLEAFVADFGTVRLLDVDSSN-------RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLS  329 (412)
Q Consensus       259 --~~~~~kl~DfGla~~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~  329 (412)
                        .++.+||+|||+++.+......       .....||+.|+|||++.+..++.++|||||||++|||+||+.||.....
T Consensus       187 ~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~  266 (364)
T 3op5_A          187 YKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLK  266 (364)
T ss_dssp             SSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTT
T ss_pred             cCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCcccccc
Confidence              8899999999999866432211       1334599999999999999999999999999999999999999973210


Q ss_pred             cccCC-----CCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          330 LSSSS-----GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       330 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      .....     .......+..+..+...      .....+.+++..||+.||++||++.++++.|+++.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~  328 (364)
T 3op5_A          267 DPKYVRDSKIRYRENIASLMDKCFPAA------NAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGL  328 (364)
T ss_dssp             CHHHHHHHHHHHHHCHHHHHHHHSCTT------CCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhhhHHHHHHHhcccc------cCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Confidence            00000     00000111111111100      11234788999999999999999999999997654

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=7.3e-42  Score=318.66  Aligned_cols=234  Identities=22%  Similarity=0.309  Sum_probs=190.3

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++|++.+.||+|+||.||+|...+++.||+|++                    +|+++......+.+.+..++||||+++
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   89 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEH   89 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCC
Confidence            578999999999999999999988999999964                    567777777888888899999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC-CCc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS-SNR  281 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~-~~~  281 (412)
                      |+|.+++.....  .+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|||+++...... ...
T Consensus        90 ~~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~  164 (269)
T 4hcu_A           90 GCLSDYLRTQRG--LFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSS  164 (269)
T ss_dssp             CBHHHHHHTTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHST
T ss_pred             CcHHHHHHhcCc--ccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEeccccccccccccccccc
Confidence            999999976442  489999999999999999999999   99999999999999999999999999998654321 112


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ....+|+.|+|||.+.+..++.++||||||+++|||++ |+.||...        ......+.+........+...   .
T Consensus       165 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~--------~~~~~~~~~~~~~~~~~~~~~---~  233 (269)
T 4hcu_A          165 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR--------SNSEVVEDISTGFRLYKPRLA---S  233 (269)
T ss_dssp             TSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--------CHHHHHHHHHTTCCCCCCTTS---C
T ss_pred             cCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCC--------CHHHHHHHHhcCccCCCCCcC---C
Confidence            33456788999999998899999999999999999999 99998732        111122222222222211211   2


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ..+.+++.+||+.||++|||+.|++++|+++.
T Consensus       234 ~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~  265 (269)
T 4hcu_A          234 THVYQIMNHCWRERPEDRPAFSRLLRQLAEIA  265 (269)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCcccCcCHHHHHHHHHHHH
Confidence            23788999999999999999999999998865

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=1.1e-41  Score=329.18  Aligned_cols=230  Identities=23%  Similarity=0.339  Sum_probs=186.9

Q ss_pred             HHhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-------------------------cCCccccceEEEecCce
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-------------------------HHSETEDSAFVVYSPQC  192 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~  192 (412)
                      ....++|++.+.||+|+||.||+|+.+ +|+.||||.+                         +|+++......+.+.+.
T Consensus        13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~   92 (345)
T 1xjd_A           13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN   92 (345)
T ss_dssp             ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred             CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE
Confidence            345678999999999999999999875 6899999964                         57777788888889999


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .++||||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++
T Consensus        93 ~~lv~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~  166 (345)
T 1xjd_A           93 LFFVMEYLNGGDLMYHIQSCH---KFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCK  166 (345)
T ss_dssp             EEEEEECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred             EEEEEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChhhh
Confidence            999999999999999987543   589999999999999999999999   99999999999999999999999999998


Q ss_pred             ccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          273 LLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       273 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      .............||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......  
T Consensus       167 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-------~~~~~~~~i~~~~~~~--  237 (345)
T 1xjd_A          167 ENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ-------DEEELFHSIRMDNPFY--  237 (345)
T ss_dssp             CCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHCCCCC--
T ss_pred             hcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCC-------CHHHHHHHHHhCCCCC--
Confidence            6544444445668999999999999999999999999999999999999998732       1111122222222211  


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHH-HHHH
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQ-RISQ  386 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~-evl~  386 (412)
                      +...   ...+.+++.+||+.||++||++. |+.+
T Consensus       238 p~~~---s~~~~~li~~lL~~dp~~R~~~~~~i~~  269 (345)
T 1xjd_A          238 PRWL---EKEAKDLLVKLFVREPEKRLGVRGDIRQ  269 (345)
T ss_dssp             CTTS---CHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             Cccc---CHHHHHHHHHHhcCCHhHcCCChHHHHc
Confidence            1111   22378899999999999999997 6653

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=3.2e-41  Score=323.06  Aligned_cols=230  Identities=21%  Similarity=0.292  Sum_probs=181.2

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCc-------
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQ-------  191 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~-------  191 (412)
                      .++|++.+.||+|+||.||+|... +|+.||||++                      +|+++......+.+..       
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence            467999999999999999999885 7999999965                      4666666655543322       


Q ss_pred             --------------------------------------------------eEEEEEEeccCCceeeeeccCcccccCCHH
Q 042435          192 --------------------------------------------------CMFFIYEYMERGSLFCVLRDDDEAIELNWT  221 (412)
Q Consensus       192 --------------------------------------------------~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~  221 (412)
                                                                        ..++||||+++|+|.+++.........++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  164 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG  164 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence                                                              379999999999999999876655567888


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC------------Cccccccccc
Q 042435          222 RRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS------------NRTLQAGTYG  289 (412)
Q Consensus       222 ~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~------------~~~~~~gt~~  289 (412)
                      .++.++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++.......            ......||+.
T Consensus       165 ~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  241 (332)
T 3qd2_B          165 VCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL  241 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred             HHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence            8999999999999999999   999999999999999999999999999987654321            1233569999


Q ss_pred             ccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHh
Q 042435          290 YIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALA  369 (412)
Q Consensus       290 y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  369 (412)
                      |+|||++.+..++.++||||||+++|||++|..|+...             ............+.........+.+++.+
T Consensus       242 y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~li~~  308 (332)
T 3qd2_B          242 YMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER-------------VRIITDVRNLKFPLLFTQKYPQEHMMVQD  308 (332)
T ss_dssp             GSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH-------------HHHHHHHHTTCCCHHHHHHCHHHHHHHHH
T ss_pred             ccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH-------------HHHHHHhhccCCCcccccCChhHHHHHHH
Confidence            99999999999999999999999999999998875421             11111111111122223333457889999


Q ss_pred             cCcCCCCCCCCHHHHHHH
Q 042435          370 CLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       370 Cl~~dP~~RPs~~evl~~  387 (412)
                      ||+.||++|||+.|++++
T Consensus       309 ~l~~~p~~Rps~~~~l~~  326 (332)
T 3qd2_B          309 MLSPSPTERPEATDIIEN  326 (332)
T ss_dssp             HHCSSGGGSCCHHHHHHS
T ss_pred             HccCCCCcCCCHHHHhhc
Confidence            999999999999999875

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=3.4e-41  Score=323.15  Aligned_cols=232  Identities=22%  Similarity=0.245  Sum_probs=186.7

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .++|++.+.||+|+||.||+|... +++.||||.+                      +|+++......+...+..++|||
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e   85 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence            468999999999999999999775 7999999964                      56777777888888999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++|+|.+++....   .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++......
T Consensus        86 ~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~  159 (323)
T 3tki_A           86 YCSGGELFDRIEPDI---GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNN  159 (323)
T ss_dssp             CCTTEEGGGGSBTTT---BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred             cCCCCcHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceeccCC
Confidence            999999999987654   589999999999999999999998   99999999999999999999999999998654322


Q ss_pred             --CCcccccccccccccccccCccc-CcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          279 --SNRTLQAGTYGYIALELVYTMVV-TEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       279 --~~~~~~~gt~~y~aPE~~~~~~~-s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                        .......||+.|+|||++.+..+ +.++|||||||++|||++|+.||....      ................+....
T Consensus       160 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~  233 (323)
T 3tki_A          160 RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS------DSCQEYSDWKEKKTYLNPWKK  233 (323)
T ss_dssp             EECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSC------TTSHHHHHHHTTCTTSTTGGG
T ss_pred             cccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCc------hHHHHHHHHhcccccCCcccc
Confidence              22234579999999999987765 778999999999999999999997321      111112222222221111111


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                         ....+.+++.+||+.||++|||+.|++++-
T Consensus       234 ---~~~~~~~li~~~L~~dP~~R~t~~eil~h~  263 (323)
T 3tki_A          234 ---IDSAPLALLHKILVENPSARITIPDIKKDR  263 (323)
T ss_dssp             ---SCHHHHHHHHHHSCSSTTTSCCHHHHTTCT
T ss_pred             ---CCHHHHHHHHHHccCChhhCcCHHHHhhCh
Confidence               223377899999999999999999998763

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.5e-41  Score=327.86  Aligned_cols=242  Identities=21%  Similarity=0.290  Sum_probs=194.4

Q ss_pred             HhhcCcccceeeeecCceEEEEEEe------CCCcEEEEEec-----------------------cCCccccceEEEecC
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAEL------PDGKVVALKKL-----------------------HHSETEDSAFVVYSP  190 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~------~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~  190 (412)
                      -..++|++.+.||+|+||.||+|..      .+++.||+|.+                       +|+++......+...
T Consensus        42 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  121 (344)
T 1rjb_A           42 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLS  121 (344)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             cCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeC
Confidence            3457899999999999999999985      24668999964                       577788888888888


Q ss_pred             ceEEEEEEeccCCceeeeeccCccc--------------------ccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCC
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDEA--------------------IELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDI  250 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~~--------------------~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDl  250 (412)
                      +..++||||+++|+|.+++......                    ..+++..++.++.|++.||+|||++   +|+||||
T Consensus       122 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Di  198 (344)
T 1rjb_A          122 GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDL  198 (344)
T ss_dssp             SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTC
T ss_pred             CccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCC
Confidence            9999999999999999998764321                    2379999999999999999999999   9999999


Q ss_pred             CCCCEEecCCCcEEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccc
Q 042435          251 SSNNILLNSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELL  327 (412)
Q Consensus       251 kp~NILl~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~  327 (412)
                      ||+||+++.++.+||+|||+++........  .....||+.|+|||.+.+..++.++||||||+++|||+| |..||...
T Consensus       199 kp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  278 (344)
T 1rjb_A          199 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI  278 (344)
T ss_dssp             SGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             ChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccC
Confidence            999999999999999999999866543322  234467889999999988899999999999999999998 99998732


Q ss_pred             cccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          328 LSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                             .........+......+.+...   ...+.+++.+||+.||++|||+.|++++|+.+...
T Consensus       279 -------~~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~  335 (344)
T 1rjb_A          279 -------PVDANFYKLIQNGFKMDQPFYA---TEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLAD  335 (344)
T ss_dssp             -------CCSHHHHHHHHTTCCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             -------CcHHHHHHHHhcCCCCCCCCCC---CHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence                   1222233334333333222222   22378899999999999999999999999988754

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=7.8e-42  Score=334.03  Aligned_cols=235  Identities=26%  Similarity=0.370  Sum_probs=179.3

Q ss_pred             cCcccceeeeecCceEEEEEEeC----CCcEEEEEec----------------------cCCccccceEEEecCceEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP----DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~----~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ++|++.+.||+|+||.||+|...    ++..||||.+                      +|+++.....++...+..++|
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv  124 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIV  124 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEE
Confidence            57999999999999999999874    5778999965                      477888888888888999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++|+|.++++...  ..+++.++..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++....
T Consensus       125 ~e~~~~~sL~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  199 (373)
T 2qol_A          125 TEYMENGSLDSFLRKHD--AQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVLED  199 (373)
T ss_dssp             EECCTTCBHHHHHHTTT--TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred             EeCCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCcccccccc
Confidence            99999999999997653  2589999999999999999999999   999999999999999999999999999987654


Q ss_pred             CCCCc---ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          277 DSSNR---TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       277 ~~~~~---~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      .....   ....+++.|+|||++.+..++.++||||||+++|||++ |+.||...        ......+.+......+.
T Consensus       200 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~--------~~~~~~~~i~~~~~~~~  271 (373)
T 2qol_A          200 DPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM--------SNQDVIKAVDEGYRLPP  271 (373)
T ss_dssp             --------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTC--------CHHHHHHHHHTTEECCC
T ss_pred             CCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCC--------CHHHHHHHHHcCCCCCC
Confidence            32211   22245778999999998899999999999999999998 99998632        11122233333222221


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      +..   ....+.+++.+||+.||++||++.|+++.|+++..
T Consensus       272 ~~~---~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~  309 (373)
T 2qol_A          272 PMD---CPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIR  309 (373)
T ss_dssp             CTT---CBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             Ccc---ccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHh
Confidence            222   22347889999999999999999999999988754

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=8.3e-42  Score=339.85  Aligned_cols=240  Identities=22%  Similarity=0.287  Sum_probs=191.8

Q ss_pred             cHHHHHHhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEe
Q 042435          134 LYENLIDATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVY  188 (412)
Q Consensus       134 ~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~  188 (412)
                      .+.++...+++|++.++||+|+||+||+|+.. +++.||+|++                        +|+++......+.
T Consensus        65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  144 (437)
T 4aw2_A           65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ  144 (437)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence            45666677899999999999999999999875 5889999965                        4677777788889


Q ss_pred             cCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeec
Q 042435          189 SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADF  268 (412)
Q Consensus       189 ~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~Df  268 (412)
                      +.+..++||||+++|+|.+++.....  .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+||
T Consensus       145 ~~~~~~lV~Ey~~gg~L~~~l~~~~~--~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL~DF  219 (437)
T 4aw2_A          145 DDNNLYLVMDYYVGGDLLTLLSKFED--RLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADF  219 (437)
T ss_dssp             CSSEEEEEECCCTTCBHHHHHHTTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCC
T ss_pred             eCCEEEEEEecCCCCcHHHHHHHccC--CCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEEcch
Confidence            99999999999999999999976322  489999999999999999999998   9999999999999999999999999


Q ss_pred             CCccccCCCCCC-ccccccccccccccccc-----CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhH
Q 042435          269 GTVRLLDVDSSN-RTLQAGTYGYIALELVY-----TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLID  342 (412)
Q Consensus       269 Gla~~~~~~~~~-~~~~~gt~~y~aPE~~~-----~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~  342 (412)
                      |+++........ .....||+.|+|||++.     ...++.++|||||||++|||++|+.||...       ........
T Consensus       220 Gla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~-------~~~~~~~~  292 (437)
T 4aw2_A          220 GSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAE-------SLVETYGK  292 (437)
T ss_dssp             TTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCS-------SHHHHHHH
T ss_pred             hhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCC-------ChhHHHHh
Confidence            999866543332 23457999999999987     567899999999999999999999999732       11112222


Q ss_pred             Hhhh--ccCCccchhhHHHHHHHHHHHHhcCcCCCCC--CCCHHHHHHH
Q 042435          343 ILYQ--RLSPPINQKIIQDIILVSTIALACLRSKPKS--RPTMQRISQE  387 (412)
Q Consensus       343 ~~~~--~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~--RPs~~evl~~  387 (412)
                      ++..  ....+  .........+.+++.+|+..+|++  ||+++|++++
T Consensus       293 i~~~~~~~~~p--~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~H  339 (437)
T 4aw2_A          293 IMNHKERFQFP--TQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKH  339 (437)
T ss_dssp             HHTHHHHCCCC--SSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred             hhhccccccCC--cccccCCHHHHHHHHHHhcccccccCCCCHHHHhCC
Confidence            2221  11111  110011223788999999888888  9999999876

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.1e-41  Score=323.18  Aligned_cols=234  Identities=22%  Similarity=0.234  Sum_probs=190.4

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEe
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ..++|++.+.||+|+||.||+|... +++.||+|.+                    +|+++......+.+.+..++||||
T Consensus         3 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~   82 (321)
T 1tki_A            3 LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hhhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence            3578999999999999999999774 6889999954                    588888888889999999999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC--CCcEEEeecCCccccCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS--NLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~--~~~~kl~DfGla~~~~~~  277 (412)
                      +++|+|.+++....  ..+++..+..++.|++.||+|||++   +|+||||||+|||++.  ++.+||+|||+++.....
T Consensus        83 ~~g~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~  157 (321)
T 1tki_A           83 ISGLDIFERINTSA--FELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG  157 (321)
T ss_dssp             CCCCBHHHHHTSSS--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT
T ss_pred             CCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCC
Confidence            99999999987543  2489999999999999999999999   9999999999999987  789999999999876543


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                      . ......||+.|+|||++.+..++.++|||||||++|||++|..||...       ........+.......+ .....
T Consensus       158 ~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-------~~~~~~~~i~~~~~~~~-~~~~~  228 (321)
T 1tki_A          158 D-NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE-------TNQQIIENIMNAEYTFD-EEAFK  228 (321)
T ss_dssp             C-EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS-------SHHHHHHHHHHTCCCCC-HHHHT
T ss_pred             C-ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCC-------CHHHHHHHHHcCCCCCC-hhhhc
Confidence            2 234457899999999999888999999999999999999999998632       11112222333222221 11111


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      .....+.+++.+||+.||++|||+.|++++-
T Consensus       229 ~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp  259 (321)
T 1tki_A          229 EISIEAMDFVDRLLVKERKSRMTASEALQHP  259 (321)
T ss_dssp             TSCHHHHHHHHTTSCSSGGGSCCHHHHHHSH
T ss_pred             cCCHHHHHHHHHHcCCChhHCcCHHHHhcCh
Confidence            2233488999999999999999999999864

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=4.2e-41  Score=326.24  Aligned_cols=228  Identities=21%  Similarity=0.299  Sum_probs=186.4

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-------------------------cCCccccceEEEecCceEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      .++|++.+.||+|+||.||+|+.. +|+.||||.+                         +|+++......+.+.+..++
T Consensus        19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l   98 (353)
T 2i0e_A           19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF   98 (353)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence            468999999999999999999875 4889999965                         35666667777888899999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++...
T Consensus        99 v~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~  172 (353)
T 2i0e_A           99 VMEYVNGGDLMYHIQQVG---RFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENI  172 (353)
T ss_dssp             EEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred             EEeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCcccccc
Confidence            999999999999987543   589999999999999999999999   99999999999999999999999999998654


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ..........||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  ..
T Consensus       173 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-------~~~~~~~~i~~~~~~~p--~~  243 (353)
T 2i0e_A          173 WDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE-------DEDELFQSIMEHNVAYP--KS  243 (353)
T ss_dssp             CTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHCCCCCC--TT
T ss_pred             cCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCC-------CHHHHHHHHHhCCCCCC--CC
Confidence            4444445568999999999999999999999999999999999999998732       11122233333332222  11


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCC-----HHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPT-----MQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  387 (412)
                      .   ...+.+++.+||+.||++||+     ++|++++
T Consensus       244 ~---s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h  277 (353)
T 2i0e_A          244 M---SKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH  277 (353)
T ss_dssp             S---CHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTS
T ss_pred             C---CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence            1   223788999999999999995     5777765

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=3.8e-41  Score=336.03  Aligned_cols=234  Identities=18%  Similarity=0.198  Sum_probs=189.0

Q ss_pred             HhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCceEEE
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ...++|++.+.||+|+||.||+|.. .+|+.+|+|.+                       +|+++......+.+.+..++
T Consensus         8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l   87 (444)
T 3soa_A            8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL   87 (444)
T ss_dssp             HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEE
T ss_pred             cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEE
Confidence            3467899999999999999999976 57899999953                       67888888888999999999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec---CCCcEEEeecCCcc
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN---SNLEAFVADFGTVR  272 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~---~~~~~kl~DfGla~  272 (412)
                      ||||+++|+|.+.+....   .+++..+..++.|++.||+|||++   +|+||||||+|||++   .++.+||+|||+++
T Consensus        88 v~E~~~gg~L~~~i~~~~---~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a~  161 (444)
T 3soa_A           88 IFDLVTGGELFEDIVARE---YYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAI  161 (444)
T ss_dssp             EECCCBCCBHHHHHHHCS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSCB
T ss_pred             EEEeCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCceeE
Confidence            999999999998887654   589999999999999999999999   999999999999998   46789999999998


Q ss_pred             ccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          273 LLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       273 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      .............||+.|+|||++.+..++.++||||+||++|||++|..||...       ........+.......+.
T Consensus       162 ~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~-------~~~~~~~~i~~~~~~~~~  234 (444)
T 3soa_A          162 EVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE-------DQHRLYQQIKAGAYDFPS  234 (444)
T ss_dssp             CCCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCS-------SHHHHHHHHHHTCCCCCT
T ss_pred             EecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCc-------cHHHHHHHHHhCCCCCCc
Confidence            7765544445568999999999999989999999999999999999999998632       111112222222222111


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                       .........+.+++.+||+.||++|||+.|++++
T Consensus       235 -~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~h  268 (444)
T 3soa_A          235 -PEWDTVTPEAKDLINKMLTINPSKRITAAEALKH  268 (444)
T ss_dssp             -TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             -cccccCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence             1111122347899999999999999999999885

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=2.6e-41  Score=314.98  Aligned_cols=233  Identities=25%  Similarity=0.387  Sum_probs=178.2

Q ss_pred             hcCcccceeeeecCceEEEEEEeCCCcEEEEEec-------------------------cCCccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      .++|++.+.||+|+||.||+|.+. ++.||||.+                         +|+++......+...+..++|
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (271)
T 3dtc_A            6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV   84 (271)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred             hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence            357899999999999999999984 889999964                         466777777778888899999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC--------CCcEEEeec
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS--------NLEAFVADF  268 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~--------~~~~kl~Df  268 (412)
                      |||+++++|.+++...    .+++..+..++.|++.||+|||++...+++||||||+||+++.        ++.+||+||
T Consensus        85 ~e~~~~~~L~~~~~~~----~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Df  160 (271)
T 3dtc_A           85 MEFARGGPLNRVLSGK----RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDF  160 (271)
T ss_dssp             EECCTTEEHHHHHTSS----CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCC
T ss_pred             EEcCCCCCHHHHhhcC----CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccC
Confidence            9999999999988644    4899999999999999999999982223999999999999985        678999999


Q ss_pred             CCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhcc
Q 042435          269 GTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRL  348 (412)
Q Consensus       269 Gla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~  348 (412)
                      |+++......  .....||+.|+|||.+.+..++.++||||||+++|||++|+.||....       .............
T Consensus       161 g~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~-------~~~~~~~~~~~~~  231 (271)
T 3dtc_A          161 GLAREWHRTT--KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGID-------GLAVAYGVAMNKL  231 (271)
T ss_dssp             CC---------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSC-------HHHHHHHHHTSCC
T ss_pred             Cccccccccc--ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-------HHHHHHhhhcCCC
Confidence            9998654332  224578999999999998889999999999999999999999987321       1111122222222


Q ss_pred             CCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          349 SPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       349 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      ..+.+...   ...+.+++.+||+.||++|||+.|++++|+++
T Consensus       232 ~~~~~~~~---~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          232 ALPIPSTC---PEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             CCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             CCCCCccc---CHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence            22222222   22378899999999999999999999999864

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=1.6e-41  Score=340.43  Aligned_cols=241  Identities=22%  Similarity=0.374  Sum_probs=193.2

Q ss_pred             HHHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecCceEEEEE
Q 042435          138 LIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       138 l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      .....++|++.+.||+|+||.||+|.+.++..||||.+                    +|+++.....++. .+..++||
T Consensus       183 ~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~  261 (454)
T 1qcf_A          183 WEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIIT  261 (454)
T ss_dssp             SBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred             eeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEE
Confidence            34456789999999999999999999988999999965                    4667777666654 67789999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.++++.... ..+++..++.++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.....
T Consensus       262 e~~~~g~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~  337 (454)
T 1qcf_A          262 EFMAKGSLLDFLKSDEG-SKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDN  337 (454)
T ss_dssp             CCCTTCBHHHHHHSHHH-HTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCH
T ss_pred             eecCCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEcCCC
Confidence            99999999999975432 2588999999999999999999999   9999999999999999999999999999875432


Q ss_pred             C-CCcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          278 S-SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       278 ~-~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      . .......+|+.|+|||++....++.++|||||||++|||+| |+.||....        .......+......+.+..
T Consensus       338 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~--------~~~~~~~i~~~~~~~~~~~  409 (454)
T 1qcf_A          338 EYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS--------NPEVIRALERGYRMPRPEN  409 (454)
T ss_dssp             HHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--------HHHHHHHHHHTCCCCCCTT
T ss_pred             ceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCC--------HHHHHHHHHcCCCCCCCCC
Confidence            1 11123346789999999998899999999999999999999 999987321        1112222333322222222


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                      .   ...+.+++.+||+.||++|||+++|++.|+++...
T Consensus       410 ~---~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~  445 (454)
T 1qcf_A          410 C---PEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTA  445 (454)
T ss_dssp             S---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred             C---CHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence            2   22478999999999999999999999999998654

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=2.9e-41  Score=318.81  Aligned_cols=242  Identities=15%  Similarity=0.151  Sum_probs=188.6

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEec
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      .++|++.+.||+|+||.||+|.. .+|+.||||.+                    +|+++......+......++||||+
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~   88 (298)
T 1csn_A            9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL   88 (298)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEec
Confidence            35799999999999999999986 67999999975                    3445555566677888999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCc-----EEEeecCCccccC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLE-----AFVADFGTVRLLD  275 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~-----~kl~DfGla~~~~  275 (412)
                       +++|.+++....  ..+++..+..++.|++.||+|||++   +|+||||||+||+++.++.     +||+|||+++...
T Consensus        89 -~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~  162 (298)
T 1csn_A           89 -GPSLEDLLDLCG--RKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYR  162 (298)
T ss_dssp             -CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESB
T ss_pred             -CCCHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECccccccc
Confidence             999999997543  2489999999999999999999998   9999999999999987765     9999999998765


Q ss_pred             CCCC-------CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhcc
Q 042435          276 VDSS-------NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRL  348 (412)
Q Consensus       276 ~~~~-------~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~  348 (412)
                      ....       ......||+.|+|||++.+..++.++||||||+++|||++|+.||.....    .........+.....
T Consensus       163 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~----~~~~~~~~~~~~~~~  238 (298)
T 1csn_A          163 DPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKA----ATNKQKYERIGEKKQ  238 (298)
T ss_dssp             CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCS----CCHHHHHHHHHHHHH
T ss_pred             cccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhc----cccHHHHHHHHhhcc
Confidence            4322       12445799999999999999999999999999999999999999974210    001111111111111


Q ss_pred             CCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          349 SPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       349 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      ..+...........+.+++.+||+.||++|||+++|++.|+++..
T Consensus       239 ~~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~  283 (298)
T 1csn_A          239 STPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLE  283 (298)
T ss_dssp             HSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred             CccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHH
Confidence            111111111122348899999999999999999999999988754

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=7.6e-41  Score=325.40  Aligned_cols=232  Identities=21%  Similarity=0.247  Sum_probs=186.2

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------------cCCccccceEEEecCce
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------------HHSETEDSAFVVYSPQC  192 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------------~~~~~~~~~~~~~~~~~  192 (412)
                      ..+.|++.+.||+|+||.||+|... +|+.||+|.+                           +|+++.....++.+.+.
T Consensus        10 ~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~   89 (361)
T 2yab_A           10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTD   89 (361)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred             hhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCE
Confidence            3567999999999999999999874 6899999965                           35666667777888899


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC----cEEEeec
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL----EAFVADF  268 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~----~~kl~Df  268 (412)
                      .++||||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++    .+||+||
T Consensus        90 ~~lv~e~~~gg~L~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~DF  163 (361)
T 2yab_A           90 VVLILELVSGGELFDFLAQKE---SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDF  163 (361)
T ss_dssp             EEEEEECCCSCBHHHHHTTCS---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCC
T ss_pred             EEEEEEcCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEec
Confidence            999999999999999987643   589999999999999999999999   999999999999998776    7999999


Q ss_pred             CCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhcc
Q 042435          269 GTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRL  348 (412)
Q Consensus       269 Gla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~  348 (412)
                      |+++...... ......||+.|+|||++.+..++.++|||||||++|||++|..||...       ........+.....
T Consensus       164 G~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~-------~~~~~~~~i~~~~~  235 (361)
T 2yab_A          164 GLAHEIEDGV-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-------TKQETLANITAVSY  235 (361)
T ss_dssp             SSCEECCTTC-CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-------SHHHHHHHHHTTCC
T ss_pred             CCceEcCCCC-ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC-------CHHHHHHHHHhcCC
Confidence            9998765432 233457999999999999989999999999999999999999998632       11111222222222


Q ss_pred             CCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          349 SPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       349 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..+ ..........+.+++.+||..||++|||+.|++++
T Consensus       236 ~~~-~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~h  273 (361)
T 2yab_A          236 DFD-EEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRH  273 (361)
T ss_dssp             CCC-HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             CCC-chhccCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            111 01111122347899999999999999999999864

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=7.5e-41  Score=318.97  Aligned_cols=234  Identities=24%  Similarity=0.310  Sum_probs=183.8

Q ss_pred             hhcCcccceeeeecCceEEEEEEeCCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ..++|++.+.||+|+||+||+|...+|+.||+|++                       +|+++.....++...+..++||
T Consensus        19 l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   98 (311)
T 3niz_A           19 LMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF   98 (311)
T ss_dssp             SSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred             hHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence            35789999999999999999999988999999964                       5777888888888899999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++ +|.+++.....  .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        99 e~~~~-~l~~~~~~~~~--~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~  172 (311)
T 3niz_A           99 EFMEK-DLKKVLDENKT--GLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARAFGIP  172 (311)
T ss_dssp             ECCSE-EHHHHHHTCTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEETTSC
T ss_pred             cCCCC-CHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCceecCCC
Confidence            99974 88777765432  489999999999999999999999   9999999999999999999999999999876554


Q ss_pred             CCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhh----------
Q 042435          278 SSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ----------  346 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~----------  346 (412)
                      ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||....       .......+...          
T Consensus       173 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~-------~~~~~~~i~~~~~~~~~~~~~  245 (311)
T 3niz_A          173 VRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVT-------DDDQLPKIFSILGTPNPREWP  245 (311)
T ss_dssp             CC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS-------TTTHHHHHHHHHCCCCTTTSG
T ss_pred             cccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCC-------hHHHHHHHHHHHCCCChHHhh
Confidence            444455678999999999876 568999999999999999999999996321       11111111100          


Q ss_pred             -----------ccC---C-ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          347 -----------RLS---P-PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       347 -----------~~~---~-~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                                 ...   . +...........+.+++.+||+.||++|||++|++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  301 (311)
T 3niz_A          246 QVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNH  301 (311)
T ss_dssp             GGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             hhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence                       000   0 0000000112347899999999999999999999874

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=4.3e-41  Score=325.33  Aligned_cols=235  Identities=22%  Similarity=0.329  Sum_probs=185.6

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-------------------------cCCccccceEEEecCceEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      .++|++.+.||+|+||.||+|+.. +++.||+|.+                         +|+++......+.+.+..++
T Consensus         8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l   87 (345)
T 3a8x_A            8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF   87 (345)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence            357999999999999999999875 6899999964                         46777777778888999999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++...
T Consensus        88 v~e~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~  161 (345)
T 3a8x_A           88 VIEYVNGGDLMFHMQRQR---KLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL  161 (345)
T ss_dssp             EECCCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCSC
T ss_pred             EEeCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEecccccccc
Confidence            999999999999887543   589999999999999999999999   99999999999999999999999999998644


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCC-CCcchh-hHHhhhccCCccc
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSS-GPKIML-IDILYQRLSPPIN  353 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~  353 (412)
                      ..........||+.|+|||++.+..++.++|||||||++|||++|+.||.......... .....+ ..+.......+  
T Consensus       162 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p--  239 (345)
T 3a8x_A          162 RPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIP--  239 (345)
T ss_dssp             CTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCC--
T ss_pred             CCCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCC--
Confidence            33334455689999999999999999999999999999999999999996321110000 001111 12222222211  


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCCH------HHHHHH
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPTM------QRISQE  387 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~------~evl~~  387 (412)
                      ...   ...+.+++.+||+.||++||++      .|++++
T Consensus       240 ~~~---s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~h  276 (345)
T 3a8x_A          240 RSL---SVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH  276 (345)
T ss_dssp             TTS---CHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTS
T ss_pred             CCC---CHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcC
Confidence            111   2237889999999999999995      677654

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.8e-41  Score=329.46  Aligned_cols=238  Identities=21%  Similarity=0.307  Sum_probs=192.7

Q ss_pred             hcCcccceeeeecCceEEEEEEeC--------CCcEEEEEec-----------------------cCCccccceEEEecC
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP--------DGKVVALKKL-----------------------HHSETEDSAFVVYSP  190 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~--------~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~  190 (412)
                      .++|.+.+.||+|+||.||+|...        ++..||||++                       +|+++......+...
T Consensus        68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  147 (382)
T 3tt0_A           68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD  147 (382)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence            468999999999999999999752        3468999964                       577888888888889


Q ss_pred             ceEEEEEEeccCCceeeeeccCcc-------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDE-------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL  257 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl  257 (412)
                      +..++||||+++|+|.+++.....             ...+++..++.++.|++.||+|||+.   +|+||||||+|||+
T Consensus       148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll  224 (382)
T 3tt0_A          148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLV  224 (382)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEE
T ss_pred             CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcceEEE
Confidence            999999999999999999875431             12489999999999999999999999   99999999999999


Q ss_pred             cCCCcEEEeecCCccccCCCC--CCcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCC
Q 042435          258 NSNLEAFVADFGTVRLLDVDS--SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSS  334 (412)
Q Consensus       258 ~~~~~~kl~DfGla~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~  334 (412)
                      +.++.+||+|||+++......  .......+|+.|+|||++.+..++.++|||||||++|||++ |..||...       
T Consensus       225 ~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~-------  297 (382)
T 3tt0_A          225 TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV-------  297 (382)
T ss_dssp             CTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC-------
T ss_pred             cCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC-------
Confidence            999999999999998765432  22234467889999999999999999999999999999999 99998632       


Q ss_pred             CCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          335 GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                       ....+.+.+........+...   ...+.+++.+||+.||++|||+.|++++|+++..
T Consensus       298 -~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~  352 (382)
T 3tt0_A          298 -PVEELFKLLKEGHRMDKPSNC---TNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVA  352 (382)
T ss_dssp             -CHHHHHHHHHTTCCCCCCSSC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHcCCCCCCCccC---CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence             111223333332222222222   2237889999999999999999999999988754

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=5.4e-41  Score=316.49  Aligned_cols=244  Identities=16%  Similarity=0.212  Sum_probs=185.0

Q ss_pred             HhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-------------------CCcccc-ceEEEecCceEEEEEE
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-------------------HSETED-SAFVVYSPQCMFFIYE  198 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-------------------~~~~~~-~~~~~~~~~~~~lv~e  198 (412)
                      ...++|++.+.||+|+||.||+|.. .+++.||||.+.                   |++... ........+..++|||
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e   85 (296)
T 4hgt_A            6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME   85 (296)
T ss_dssp             -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEE
Confidence            3457899999999999999999986 678999999642                   233222 2333456778899999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe---cCCCcEEEeecCCccccC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL---NSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl---~~~~~~kl~DfGla~~~~  275 (412)
                      |+ +++|.+++.....  .+++..+..++.|++.||+|||++   +|+||||||+||++   +.++.+||+|||+++...
T Consensus        86 ~~-~~~L~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~  159 (296)
T 4hgt_A           86 LL-GPSLEDLFNFCSR--KFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR  159 (296)
T ss_dssp             CC-CCBHHHHHHHTTS--CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred             cc-CCCHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCccceecc
Confidence            99 9999999874332  489999999999999999999999   99999999999999   788999999999998765


Q ss_pred             CCCC-------CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhcc
Q 042435          276 VDSS-------NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRL  348 (412)
Q Consensus       276 ~~~~-------~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~  348 (412)
                      ....       ......||+.|+|||.+.+..++.++|||||||++|||++|+.||.....    ...............
T Consensus       160 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~----~~~~~~~~~~~~~~~  235 (296)
T 4hgt_A          160 DARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKA----ATKRQKYERISEKKM  235 (296)
T ss_dssp             CTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCC----SSSSSHHHHHHHHHH
T ss_pred             CcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccch----hhhhhhhhhhhcccc
Confidence            4322       12345789999999999999999999999999999999999999974311    111122222222222


Q ss_pred             CCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          349 SPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       349 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      ..+...........+.+++.+||+.||++|||+.++++.|+++..
T Consensus       236 ~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~  280 (296)
T 4hgt_A          236 STPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH  280 (296)
T ss_dssp             HSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHH
T ss_pred             cchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence            222111111112348899999999999999999999999988754

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=4.1e-41  Score=326.24  Aligned_cols=234  Identities=18%  Similarity=0.237  Sum_probs=187.3

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec--------------------------cCCccccceEEEecCceEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL--------------------------HHSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l--------------------------~~~~~~~~~~~~~~~~~~~  194 (412)
                      .+.|++.+.||+|+||.||+|.. .+|+.||||.+                          +|+++......+...+..+
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  102 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY  102 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            35799999999999999999976 46899999954                          5778888888888899999


Q ss_pred             EEEEeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCc---EEEeecCC
Q 042435          195 FIYEYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLE---AFVADFGT  270 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~---~kl~DfGl  270 (412)
                      +||||+++|+|.+++.... ....+++..+..++.|++.||+|||++   +|+||||||+|||++.++.   +||+|||+
T Consensus       103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~  179 (351)
T 3c0i_A          103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFGV  179 (351)
T ss_dssp             EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECCCTT
T ss_pred             EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEecCcc
Confidence            9999999999988775432 223489999999999999999999999   9999999999999976554   99999999


Q ss_pred             ccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCC
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP  350 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (412)
                      ++.............||+.|+|||++.+..++.++|||||||++|||++|+.||....        ......+.......
T Consensus       180 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~--------~~~~~~i~~~~~~~  251 (351)
T 3c0i_A          180 AIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK--------ERLFEGIIKGKYKM  251 (351)
T ss_dssp             CEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH--------HHHHHHHHHTCCCC
T ss_pred             eeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH--------HHHHHHHHcCCCCC
Confidence            9876654443445679999999999999999999999999999999999999987321        11122222222221


Q ss_pred             ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       351 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      . ..........+.+++.+||+.||++|||+.|++++
T Consensus       252 ~-~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h  287 (351)
T 3c0i_A          252 N-PRQWSHISESAKDLVRRMLMLDPAERITVYEALNH  287 (351)
T ss_dssp             C-HHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             C-ccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            1 11111123348899999999999999999999864

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.6e-40  Score=317.55  Aligned_cols=243  Identities=19%  Similarity=0.252  Sum_probs=188.4

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCc--eEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQ--CMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~--~~~lv~  197 (412)
                      ++|.+.+.||+|+||.||+|... +++.||||.+                      +|+++.....++....  ..++||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence            57999999999999999999875 5899999975                      4566666666665544  789999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe----cCCCcEEEeecCCccc
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL----NSNLEAFVADFGTVRL  273 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl----~~~~~~kl~DfGla~~  273 (412)
                      ||+++|+|.+++........+++.++..++.|++.||+|||+.   +|+||||||+||++    +.++.+||+|||+++.
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~  165 (319)
T 4euu_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE  165 (319)
T ss_dssp             ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTTCEE
T ss_pred             eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCCcee
Confidence            9999999999998765444599999999999999999999999   99999999999999    7888899999999987


Q ss_pred             cCCCCCCccccccccccccccccc--------CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhh
Q 042435          274 LDVDSSNRTLQAGTYGYIALELVY--------TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY  345 (412)
Q Consensus       274 ~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~  345 (412)
                      ...... .....||+.|+|||++.        +..++.++|||||||++|||+||+.||......   ......+..+..
T Consensus       166 ~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~---~~~~~~~~~~~~  241 (319)
T 4euu_A          166 LEDDEQ-FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGP---RRNKEVMYKIIT  241 (319)
T ss_dssp             CCTTCC-BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCG---GGCHHHHHHHHH
T ss_pred             cCCCCc-eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcc---chhHHHHHHHhc
Confidence            654332 23457999999999986        567899999999999999999999999632110   000111112221


Q ss_pred             hccC--------------------CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          346 QRLS--------------------PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       346 ~~~~--------------------~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ....                    +............+.+++.+||+.||++|||++|++++..+..
T Consensus       242 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~  308 (319)
T 4euu_A          242 GKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDIL  308 (319)
T ss_dssp             HCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHT
T ss_pred             CCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHh
Confidence            1110                    0001112233445889999999999999999999999997654

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=2.4e-41  Score=325.96  Aligned_cols=245  Identities=22%  Similarity=0.300  Sum_probs=192.4

Q ss_pred             HHHhhcCcccceeeeecCceEEEEEEeC------CCcEEEEEec----------------------cCCccccceEEEec
Q 042435          138 LIDATEYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKL----------------------HHSETEDSAFVVYS  189 (412)
Q Consensus       138 l~~~~~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l----------------------~~~~~~~~~~~~~~  189 (412)
                      +....++|++.+.||+|+||.||+|...      +++.||||.+                      +|+++......+..
T Consensus        42 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~  121 (343)
T 1luf_A           42 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV  121 (343)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred             eEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc
Confidence            3345688999999999999999999874      3589999965                      46777777888888


Q ss_pred             CceEEEEEEeccCCceeeeeccCcc---------------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEe
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDE---------------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHR  248 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHr  248 (412)
                      .+..++||||+++|+|.+++.....                     ...+++.+++.++.|++.||+|||++   +|+||
T Consensus       122 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH~  198 (343)
T 1luf_A          122 GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHR  198 (343)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             CCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            8999999999999999999875321                     13589999999999999999999999   99999


Q ss_pred             CCCCCCEEecCCCcEEEeecCCccccCCCC--CCcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcc
Q 042435          249 DISSNNILLNSNLEAFVADFGTVRLLDVDS--SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGE  325 (412)
Q Consensus       249 Dlkp~NILl~~~~~~kl~DfGla~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~  325 (412)
                      ||||+||+++.++.+||+|||+++......  .......+|+.|+|||.+.+..++.++||||||+++|||+| |..||.
T Consensus       199 Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~  278 (343)
T 1luf_A          199 DLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYY  278 (343)
T ss_dssp             CCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred             CCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCC
Confidence            999999999999999999999997654322  12234567899999999998889999999999999999999 999986


Q ss_pred             cccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCC
Q 042435          326 LLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKK  396 (412)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  396 (412)
                      ..       .. ......+........+...   ...+.+++.+||+.||++|||+.|++++|+++....+
T Consensus       279 ~~-------~~-~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~  338 (343)
T 1luf_A          279 GM-------AH-EEVIYYVRDGNILACPENC---PLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAE  338 (343)
T ss_dssp             TS-------CH-HHHHHHHHTTCCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC---
T ss_pred             CC-------Ch-HHHHHHHhCCCcCCCCCCC---CHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhh
Confidence            32       11 1111222111111111221   2247889999999999999999999999999987554

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=2.3e-41  Score=317.46  Aligned_cols=236  Identities=23%  Similarity=0.297  Sum_probs=188.3

Q ss_pred             hhcCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEec
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      ..++|++.+.||+|+||.||+|.+.++..||+|.+                    +|+++......+...+..++||||+
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~  101 (283)
T 3gen_A           22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM  101 (283)
T ss_dssp             CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCC
T ss_pred             CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEecc
Confidence            35679999999999999999999998899999965                    4677777777888889999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC-C
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS-S  279 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~-~  279 (412)
                      ++|+|.+++.....  .+++.++..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++...... .
T Consensus       102 ~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~  176 (283)
T 3gen_A          102 ANGCLLNYLREMRH--RFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYT  176 (283)
T ss_dssp             TTCBHHHHHHCGGG--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHH
T ss_pred             CCCcHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEccccccccccccccc
Confidence            99999999976432  489999999999999999999999   99999999999999999999999999998654321 1


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      ......+|+.|+|||.+.+..++.++||||||+++|||+| |+.||....        .....+.+........+.... 
T Consensus       177 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~-  247 (283)
T 3gen_A          177 SSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFT--------NSETAEHIAQGLRLYRPHLAS-  247 (283)
T ss_dssp             STTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSC--------HHHHHHHHHTTCCCCCCTTCC-
T ss_pred             cccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccC--------hhHHHHHHhcccCCCCCCcCC-
Confidence            1223456788999999998889999999999999999998 999987321        111222222222222112211 


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                        ..+.+++.+||+.||++|||+.|++++|+++.
T Consensus       248 --~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~  279 (283)
T 3gen_A          248 --EKVYTIMYSCWHEKADERPTFKILLSNILDVM  279 (283)
T ss_dssp             --HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHccCChhHCcCHHHHHHHHHHHh
Confidence              23788999999999999999999999998764

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=4.4e-41  Score=328.40  Aligned_cols=224  Identities=25%  Similarity=0.313  Sum_probs=181.4

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-------------------------cCCccccceEEEecCceEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      .++|++.+.||+|+||.||+|+.. +++.||||.+                         +|+++......+.+.+..|+
T Consensus        37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l  116 (373)
T 2r5t_A           37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF  116 (373)
T ss_dssp             GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence            467999999999999999999875 5889999965                         34555555666788889999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||||+++|+|.+++....   .+++.....++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++...
T Consensus       117 v~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~~~  190 (373)
T 2r5t_A          117 VLDYINGGELFYHLQRER---CFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENI  190 (373)
T ss_dssp             EEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGGGB
T ss_pred             EEeCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCccccccc
Confidence            999999999999887543   588899999999999999999999   99999999999999999999999999998654


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ..........||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  ..
T Consensus       191 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-------~~~~~~~~i~~~~~~~~--~~  261 (373)
T 2r5t_A          191 EHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR-------NTAEMYDNILNKPLQLK--PN  261 (373)
T ss_dssp             CCCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS-------BHHHHHHHHHHSCCCCC--SS
T ss_pred             cCCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCC-------CHHHHHHHHHhcccCCC--CC
Confidence            4444445668999999999999999999999999999999999999998632       11122223333322221  11


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQR  383 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~e  383 (412)
                      .   ...+.+++.+||+.||++||++.+
T Consensus       262 ~---~~~~~~li~~lL~~dp~~R~~~~~  286 (373)
T 2r5t_A          262 I---TNSARHLLEGLLQKDRTKRLGAKD  286 (373)
T ss_dssp             S---CHHHHHHHHHHTCSSGGGSTTTTT
T ss_pred             C---CHHHHHHHHHHcccCHHhCCCCCC
Confidence            1   123788999999999999999853

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.4e-41  Score=334.15  Aligned_cols=240  Identities=22%  Similarity=0.277  Sum_probs=190.2

Q ss_pred             ccHHHHHHhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEE
Q 042435          133 ILYENLIDATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVV  187 (412)
Q Consensus       133 ~~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~  187 (412)
                      +.+.++....++|++.+.||+|+||+||+|+.+ +|+.||||++                        +|+++......+
T Consensus        51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~  130 (412)
T 2vd5_A           51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF  130 (412)
T ss_dssp             HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred             hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence            345566667899999999999999999999874 7999999975                        466777777788


Q ss_pred             ecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEee
Q 042435          188 YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVAD  267 (412)
Q Consensus       188 ~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~D  267 (412)
                      .+.+..|+||||+++|+|.+++....  ..+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|
T Consensus       131 ~~~~~~~lVmE~~~gg~L~~~l~~~~--~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vkL~D  205 (412)
T 2vd5_A          131 QDENYLYLVMEYYVGGDLLTLLSKFG--ERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIRLAD  205 (412)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHHS--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECC
T ss_pred             eeCCEEEEEEcCCCCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEEEee
Confidence            88999999999999999999997532  2489999999999999999999998   999999999999999999999999


Q ss_pred             cCCccccCCCCCC-ccccccccccccccccc-------CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcch
Q 042435          268 FGTVRLLDVDSSN-RTLQAGTYGYIALELVY-------TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIM  339 (412)
Q Consensus       268 fGla~~~~~~~~~-~~~~~gt~~y~aPE~~~-------~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~  339 (412)
                      ||+++........ .....||+.|+|||++.       ...++.++|||||||++|||++|+.||...       .....
T Consensus       206 FGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~-------~~~~~  278 (412)
T 2vd5_A          206 FGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYAD-------STAET  278 (412)
T ss_dssp             CTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCS-------SHHHH
T ss_pred             chhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCC-------CHHHH
Confidence            9999876544332 23457999999999987       357899999999999999999999998732       11111


Q ss_pred             hhHHhhh--ccCCccchhhHHHHHHHHHHHHhcCcCCCCCC---CCHHHHHHH
Q 042435          340 LIDILYQ--RLSPPINQKIIQDIILVSTIALACLRSKPKSR---PTMQRISQE  387 (412)
Q Consensus       340 ~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~R---Ps~~evl~~  387 (412)
                      ...+...  ....+.  ........+.+++.+||. +|++|   |+++|++++
T Consensus       279 ~~~i~~~~~~~~~p~--~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~H  328 (412)
T 2vd5_A          279 YGKIVHYKEHLSLPL--VDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTH  328 (412)
T ss_dssp             HHHHHTHHHHCCCC------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTS
T ss_pred             HHHHHhcccCcCCCc--cccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcC
Confidence            2222221  111110  001112347889999999 99998   699999876

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=6.3e-41  Score=321.36  Aligned_cols=234  Identities=23%  Similarity=0.312  Sum_probs=183.0

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcE----EEEEec----------------------cCCccccceEEEecCceEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKV----VALKKL----------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~----vAvK~l----------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ++|++.+.||+|+||.||+|.+. +++.    ||+|.+                      +|+++.....++. .+..++
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~   91 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL   91 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence            56889999999999999999864 4443    788854                      4666666666554 567899


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||||+++|+|.+++.....  .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++...
T Consensus        92 v~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~  166 (325)
T 3kex_A           92 VTQYLPLGSLLDHVRQHRG--ALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADLLP  166 (325)
T ss_dssp             EEECCTTCBSHHHHHSSGG--GSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGGSC
T ss_pred             EEEeCCCCCHHHHHHHccc--cCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCcccccC
Confidence            9999999999999876532  589999999999999999999999   99999999999999999999999999998765


Q ss_pred             CCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          276 VDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       276 ~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ....  ......||..|+|||++.+..++.++||||||+++|||+| |+.||...       . .....+.+........
T Consensus       167 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~-------~-~~~~~~~~~~~~~~~~  238 (325)
T 3kex_A          167 PDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGL-------R-LAEVPDLLEKGERLAQ  238 (325)
T ss_dssp             CCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTS-------C-TTHHHHHHHTTCBCCC
T ss_pred             cccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCcccc-------C-HHHHHHHHHcCCCCCC
Confidence            4332  2244567889999999998899999999999999999999 99998732       1 1122233322221111


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      +...   ...+.+++.+||+.||++|||+.|++++|+.+..
T Consensus       239 ~~~~---~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~  276 (325)
T 3kex_A          239 PQIC---TIDVYMVMVKCWMIDENIRPTFKELANEFTRMAR  276 (325)
T ss_dssp             CTTB---CTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred             CCcC---cHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence            1111   1237789999999999999999999999988754

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.2e-40  Score=319.69  Aligned_cols=231  Identities=22%  Similarity=0.269  Sum_probs=185.1

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------------cCCccccceEEEecCceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------------HHSETEDSAFVVYSPQCM  193 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------------~~~~~~~~~~~~~~~~~~  193 (412)
                      .+.|++.+.||+|+||.||+|... +|+.||+|.+                           +|+++.....++...+..
T Consensus        10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   89 (326)
T 2y0a_A           10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV   89 (326)
T ss_dssp             HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence            456999999999999999999874 6899999965                           356666777778888999


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC----cEEEeecC
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL----EAFVADFG  269 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~----~~kl~DfG  269 (412)
                      ++||||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+||+++.++    .+||+|||
T Consensus        90 ~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg  163 (326)
T 2y0a_A           90 ILILELVAGGELFDFLAEKE---SLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFG  163 (326)
T ss_dssp             EEEEECCCSCBHHHHHTTSS---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCCT
T ss_pred             EEEEEcCCCCCHHHHHHhcC---CcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEECC
Confidence            99999999999999987643   589999999999999999999998   999999999999998877    89999999


Q ss_pred             CccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          270 TVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       270 la~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      +++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+......
T Consensus       164 ~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-------~~~~~~~~~~~~~~~  235 (326)
T 2y0a_A          164 LAHKIDFGN-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-------TKQETLANVSAVNYE  235 (326)
T ss_dssp             TCEECCTTS-CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-------SHHHHHHHHHHTCCC
T ss_pred             CCeECCCCC-ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC-------CHHHHHHHHHhcCCC
Confidence            998765332 223457999999999999889999999999999999999999998622       111111122211111


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .+ ..........+.+++.+||+.||++|||+.|++++
T Consensus       236 ~~-~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  272 (326)
T 2y0a_A          236 FE-DEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH  272 (326)
T ss_dssp             CC-HHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             cC-ccccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            11 11111122347899999999999999999999985

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=7.2e-41  Score=334.85  Aligned_cols=228  Identities=22%  Similarity=0.304  Sum_probs=185.0

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      .++|++.+.||+|+||.||+|.. .+|+.||||.+                        +|+++......+...+..++|
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  226 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV  226 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence            46799999999999999999976 56899999964                        466777777778888999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHh-CCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH-DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~-~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      |||+++|+|.+++....   .+++..+..++.|++.||+|||+ .   +|+||||||+|||++.++.+||+|||+++...
T Consensus       227 ~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~  300 (446)
T 4ejn_A          227 MEYANGGELFFHLSRER---VFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGI  300 (446)
T ss_dssp             ECCCSSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCTTC
T ss_pred             EeeCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCceecc
Confidence            99999999998886543   58999999999999999999998 7   99999999999999999999999999998654


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ..........||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  ..
T Consensus       301 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-------~~~~~~~~i~~~~~~~p--~~  371 (446)
T 4ejn_A          301 KDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-------DHEKLFELILMEEIRFP--RT  371 (446)
T ss_dssp             C-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHCCCCCC--TT
T ss_pred             CCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCC-------CHHHHHHHHHhCCCCCC--cc
Confidence            4444445568999999999999999999999999999999999999998632       11111222222222221  11


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                      .   ...+.+++.+||+.||++||     +++|++++
T Consensus       372 ~---~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~h  405 (446)
T 4ejn_A          372 L---GPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQH  405 (446)
T ss_dssp             S---CHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             C---CHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhC
Confidence            1   12378899999999999999     99999874

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=6.4e-41  Score=318.85  Aligned_cols=238  Identities=24%  Similarity=0.360  Sum_probs=191.6

Q ss_pred             hhcCcccceeeeecCceEEEEEEe------CCCcEEEEEec----------------------cCCccccceEEEecCce
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL------PDGKVVALKKL----------------------HHSETEDSAFVVYSPQC  192 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~------~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~  192 (412)
                      ..++|.+.+.||+|+||.||+|..      .+++.||+|.+                      +|+++......+...+.
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  100 (314)
T 2ivs_A           21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP  100 (314)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred             chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence            356799999999999999999975      34589999965                      46777777888888899


Q ss_pred             EEEEEEeccCCceeeeeccCcc---------------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCC
Q 042435          193 MFFIYEYMERGSLFCVLRDDDE---------------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDIS  251 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~---------------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlk  251 (412)
                      .++||||+++|+|.+++.....                     ...+++..+..++.|++.||+|||++   +|+|||||
T Consensus       101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dik  177 (314)
T 2ivs_A          101 LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHRDLA  177 (314)
T ss_dssp             CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEECCCCS
T ss_pred             eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCcccccc
Confidence            9999999999999999875431                     12489999999999999999999999   99999999


Q ss_pred             CCCEEecCCCcEEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCccccc
Q 042435          252 SNNILLNSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLL  328 (412)
Q Consensus       252 p~NILl~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~  328 (412)
                      |+||+++.++.+||+|||+++........  .....+|+.|+|||.+.+..++.++||||||+++|||+| |+.||... 
T Consensus       178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~-  256 (314)
T 2ivs_A          178 ARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGI-  256 (314)
T ss_dssp             GGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC-
T ss_pred             hheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCC-
Confidence            99999999999999999999866443221  233457889999999998889999999999999999999 99998632 


Q ss_pred             ccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          329 SLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                             ......+.+........+...   ...+.+++.+||+.||++|||+.|++++|+++.
T Consensus       257 -------~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~  310 (314)
T 2ivs_A          257 -------PPERLFNLLKTGHRMERPDNC---SEEMYRLMLQCWKQEPDKRPVFADISKDLEKMM  310 (314)
T ss_dssp             -------CGGGHHHHHHTTCCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -------CHHHHHHHhhcCCcCCCCccC---CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence                   112223333332222222222   224789999999999999999999999998764

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=1.1e-40  Score=314.67  Aligned_cols=243  Identities=16%  Similarity=0.211  Sum_probs=187.0

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-------------------CCccc-cceEEEecCceEEEEEEe
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-------------------HSETE-DSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-------------------~~~~~-~~~~~~~~~~~~~lv~ey  199 (412)
                      ..++|++.+.||+|+||.||+|.. .+|+.||||.+.                   |++.. .........+..++||||
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~   86 (296)
T 3uzp_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL   86 (296)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             eccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEEe
Confidence            357899999999999999999986 679999999753                   22222 223334567788999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe---cCCCcEEEeecCCccccCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL---NSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl---~~~~~~kl~DfGla~~~~~  276 (412)
                      + +++|.+++....  ..+++..+..++.|++.||+|||++   +|+||||||+||++   +.++.+||+|||+++....
T Consensus        87 ~-~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~  160 (296)
T 3uzp_A           87 L-GPSLEDLFNFCS--RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD  160 (296)
T ss_dssp             C-CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred             c-CCCHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccc
Confidence            9 899999987433  2589999999999999999999999   99999999999999   4889999999999987654


Q ss_pred             CCC-------CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          277 DSS-------NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       277 ~~~-------~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      ...       ......||+.|+|||.+.+..++.++|||||||++|||++|+.||.....    .........+......
T Consensus       161 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~----~~~~~~~~~~~~~~~~  236 (296)
T 3uzp_A          161 ARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKA----ATKRQKYERISEKKMS  236 (296)
T ss_dssp             TTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCC----SSSSSHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCc----hhhhhhhhhhcccccC
Confidence            332       12345799999999999999999999999999999999999999974211    1111222222222222


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      .+...........+.+++.+||+.||++|||+.++++.|+++..
T Consensus       237 ~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~  280 (296)
T 3uzp_A          237 TPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFH  280 (296)
T ss_dssp             SCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHH
T ss_pred             CchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHH
Confidence            21111111112348899999999999999999999999988754

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=6.4e-41  Score=324.04  Aligned_cols=238  Identities=16%  Similarity=0.205  Sum_probs=180.7

Q ss_pred             hcCcccceeeeecCceEEEEEEeC----CCcEEEEEec--------------------------------cCCccccceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP----DGKVVALKKL--------------------------------HHSETEDSAF  185 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~----~~~~vAvK~l--------------------------------~~~~~~~~~~  185 (412)
                      .++|++.+.||+|+||.||+|...    ++..+|+|.+                                +|+++.....
T Consensus        36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~  115 (345)
T 2v62_A           36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG  115 (345)
T ss_dssp             SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred             CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence            367999999999999999999875    5788999965                                4566666666


Q ss_pred             EEec----CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC
Q 042435          186 VVYS----PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL  261 (412)
Q Consensus       186 ~~~~----~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~  261 (412)
                      .+..    ....++||||+ +++|.+++....   .+++..++.++.|++.||+|||++   +|+||||||+|||++.++
T Consensus       116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~  188 (345)
T 2v62_A          116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNG---TFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYKN  188 (345)
T ss_dssp             EEEEESSSCEEEEEEEECE-EEEHHHHCBGGG---BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESSS
T ss_pred             ccccccCCCcEEEEEEecc-CCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccCC
Confidence            6655    67899999999 999999997654   599999999999999999999999   999999999999998777


Q ss_pred             --cEEEeecCCccccCCCC-------CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccccccc
Q 042435          262 --EAFVADFGTVRLLDVDS-------SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS  332 (412)
Q Consensus       262 --~~kl~DfGla~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~  332 (412)
                        .+||+|||+++.+....       .......||+.|+|||++.+..++.++|||||||++|||+||+.||....    
T Consensus       189 ~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~----  264 (345)
T 2v62_A          189 PDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNL----  264 (345)
T ss_dssp             TTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGT----
T ss_pred             CCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccc----
Confidence              99999999998664321       11244579999999999999899999999999999999999999996310    


Q ss_pred             CCCCcchhhHHhhhccCCccchhhH------HHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          333 SSGPKIMLIDILYQRLSPPINQKII------QDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                        ........ .........+....      .....+.+++.+||+.||++|||+.++++.|+....
T Consensus       265 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~  328 (345)
T 2v62_A          265 --KDPVAVQT-AKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI  328 (345)
T ss_dssp             --TCHHHHHH-HHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred             --cccHHHHH-HHHhhcccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence              11111111 11111001111100      112248899999999999999999999999998764

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=4.7e-41  Score=324.65  Aligned_cols=237  Identities=19%  Similarity=0.245  Sum_probs=188.1

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------cCCccccceEEEecCceEEEEEEec
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      ...++|++.+.||+|+||.||+|... +|+.||||.+                  +|+++......+.+.+..++||||+
T Consensus        19 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~   98 (342)
T 2qr7_A           19 QFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELM   98 (342)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCC
T ss_pred             CccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeCC
Confidence            34577999999999999999999774 6899999965                  5788888888899999999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC----CcEEEeecCCccccCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN----LEAFVADFGTVRLLDV  276 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~----~~~kl~DfGla~~~~~  276 (412)
                      ++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||+.++    +.+||+|||+++....
T Consensus        99 ~gg~L~~~i~~~~---~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~  172 (342)
T 2qr7_A           99 KGGELLDKILRQK---FFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRA  172 (342)
T ss_dssp             CSCBHHHHHHTCT---TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBC
T ss_pred             CCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcC
Confidence            9999999887654   589999999999999999999999   99999999999998433    3599999999987655


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .........||+.|+|||++.+..++.++|||||||++|||++|+.||....    ..........+.......+. ...
T Consensus       173 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~----~~~~~~~~~~i~~~~~~~~~-~~~  247 (342)
T 2qr7_A          173 ENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGP----DDTPEEILARIGSGKFSLSG-GYW  247 (342)
T ss_dssp             TTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSST----TSCHHHHHHHHHHCCCCCCS-TTT
T ss_pred             CCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCC----cCCHHHHHHHHccCCcccCc-ccc
Confidence            5444455679999999999988889999999999999999999999987321    00111111222222221110 111


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ......+.+++.+||+.||++|||+.|++++
T Consensus       248 ~~~s~~~~~li~~~L~~dP~~R~t~~~il~h  278 (342)
T 2qr7_A          248 NSVSDTAKDLVSKMLHVDPHQRLTAALVLRH  278 (342)
T ss_dssp             TTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             ccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            1122347889999999999999999999875

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=3.9e-41  Score=332.52  Aligned_cols=237  Identities=22%  Similarity=0.310  Sum_probs=191.2

Q ss_pred             HHHHHHhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEec
Q 042435          135 YENLIDATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYS  189 (412)
Q Consensus       135 ~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~  189 (412)
                      +.++....++|++.+.||+|+||+||+|+.. +++.||+|.+                        +|+++......+.+
T Consensus        61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~  140 (410)
T 3v8s_A           61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  140 (410)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence            3556667789999999999999999999875 5899999964                        57788888888899


Q ss_pred             CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      .+..++||||+++|+|.++++..    .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||
T Consensus       141 ~~~~~lV~E~~~gg~L~~~l~~~----~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFG  213 (410)
T 3v8s_A          141 DRYLYMVMEYMPGGDLVNLMSNY----DVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFG  213 (410)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             CCEEEEEEeCCCCCcHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEeccc
Confidence            99999999999999999988654    488999999999999999999999   99999999999999999999999999


Q ss_pred             CccccCCCCC-CcccccccccccccccccCcc----cCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHh
Q 042435          270 TVRLLDVDSS-NRTLQAGTYGYIALELVYTMV----VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDIL  344 (412)
Q Consensus       270 la~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~----~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~  344 (412)
                      +++....... ......||+.|+|||++.+..    ++.++|||||||++|||++|+.||...       ........+.
T Consensus       214 ~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~-------~~~~~~~~i~  286 (410)
T 3v8s_A          214 TCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD-------SLVGTYSKIM  286 (410)
T ss_dssp             TCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCS-------SHHHHHHHHH
T ss_pred             eeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCC-------ChhhHHHHHH
Confidence            9987654322 223567999999999997655    889999999999999999999999732       1112222232


Q ss_pred             hhc--cCCccchhhHHHHHHHHHHHHhcCcCCCCC--CCCHHHHHHHH
Q 042435          345 YQR--LSPPINQKIIQDIILVSTIALACLRSKPKS--RPTMQRISQEL  388 (412)
Q Consensus       345 ~~~--~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~--RPs~~evl~~L  388 (412)
                      ...  ...+.....   ...+.+++.+||..+|++  ||+++||++|-
T Consensus       287 ~~~~~~~~p~~~~~---s~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp  331 (410)
T 3v8s_A          287 NHKNSLTFPDDNDI---SKEAKNLICAFLTDREVRLGRNGVEEIKRHL  331 (410)
T ss_dssp             THHHHCCCCTTCCC---CHHHHHHHHHHSSCGGGCTTSSCHHHHHTSG
T ss_pred             hccccccCCCcccc---cHHHHHHHHHHccChhhhCCCCCHHHHhcCc
Confidence            221  221111111   223788999999999988  99999999873

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=4.9e-41  Score=322.43  Aligned_cols=234  Identities=23%  Similarity=0.382  Sum_probs=184.4

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCc----EEEEEec----------------------cCCccccceEEEecCceEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGK----VVALKKL----------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~----~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ++|++.+.||+|+||.||+|.+. +++    .||+|.+                      +|+++.....++... ..++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~   93 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   93 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESS-SEEE
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC-CeEE
Confidence            56899999999999999999863 444    3688864                      567777777777664 4789


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      |+||+++|+|.+++.....  .+++..++.++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++...
T Consensus        94 v~e~~~~g~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~  168 (327)
T 3poz_A           94 ITQLMPFGCLLDYVREHKD--NIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG  168 (327)
T ss_dssp             EEECCTTCBHHHHHHHSTT--SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHHHT
T ss_pred             EEEecCCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeEcc
Confidence            9999999999999876432  589999999999999999999999   99999999999999999999999999998765


Q ss_pred             CCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          276 VDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       276 ~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      .....  .....+|+.|+|||++.+..++.++|||||||++|||+| |+.||...        ........+......+.
T Consensus       169 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~--------~~~~~~~~~~~~~~~~~  240 (327)
T 3poz_A          169 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI--------PASEISSILEKGERLPQ  240 (327)
T ss_dssp             TTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--------CGGGHHHHHHTTCCCCC
T ss_pred             CCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCC--------CHHHHHHHHHcCCCCCC
Confidence            43322  233456889999999999999999999999999999999 99998732        12223334433332222


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      +...   ...+.+++.+||+.||++|||+.|++++|+.+..
T Consensus       241 ~~~~---~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~  278 (327)
T 3poz_A          241 PPIC---TIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             CTTB---CHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred             CccC---CHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence            2222   2247889999999999999999999999987654

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=5.4e-41  Score=339.93  Aligned_cols=238  Identities=23%  Similarity=0.314  Sum_probs=194.8

Q ss_pred             hhcCcccceeeeecCceEEEEEEeCC-CcEEEEEec--------------------cCCccccceEEEecCceEEEEEEe
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELPD-GKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~~-~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ..++|++.+.||+|+||.||+|.+.. +..||||.+                    +|+++.....++...+..++||||
T Consensus       218 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~  297 (495)
T 1opk_A          218 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF  297 (495)
T ss_dssp             CGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             CHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEc
Confidence            45678899999999999999998864 889999965                    577888888889889999999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++|+|.++++.... ..+++..++.++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.......
T Consensus       298 ~~~g~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~  373 (495)
T 1opk_A          298 MTYGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTY  373 (495)
T ss_dssp             CTTCBHHHHHHHSCT-TTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCE
T ss_pred             cCCCCHHHHHHhcCc-CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceeccCCce
Confidence            999999999975432 2589999999999999999999999   999999999999999999999999999987643321


Q ss_pred             -CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          280 -NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       280 -~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                       ......+++.|+|||++.+..++.++|||||||++|||+| |+.||...        ......+.+......+.+....
T Consensus       374 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~--------~~~~~~~~~~~~~~~~~~~~~~  445 (495)
T 1opk_A          374 TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI--------DLSQVYELLEKDYRMERPEGCP  445 (495)
T ss_dssp             ECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC--------CGGGHHHHHHTTCCCCCCTTCC
T ss_pred             eecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCC--------CHHHHHHHHHcCCCCCCCCCCC
Confidence             1223456789999999998899999999999999999999 99998732        1112333343333332222222


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                         ..+.+++.+||+.||++|||+.|+++.|+.+..
T Consensus       446 ---~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~  478 (495)
T 1opk_A          446 ---EKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ  478 (495)
T ss_dssp             ---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCS
T ss_pred             ---HHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHh
Confidence               247889999999999999999999999998864

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=4.3e-41  Score=323.08  Aligned_cols=240  Identities=15%  Similarity=0.131  Sum_probs=187.9

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEec
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      .++|++.+.||+|+||.||+|.. .+|+.||||.+                    +|+++......+...+..++||||+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~   87 (330)
T 2izr_A            8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLELL   87 (330)
T ss_dssp             TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEECC
T ss_pred             cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEeC
Confidence            36799999999999999999986 57999999965                    5667777777788888999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCc-----EEEeecCCccccC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLE-----AFVADFGTVRLLD  275 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~-----~kl~DfGla~~~~  275 (412)
                       +++|.+++....  ..+++..+..++.|++.||+|||++   +|+||||||+|||++.++.     +||+|||+++...
T Consensus        88 -~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~  161 (330)
T 2izr_A           88 -GPSLEDLFDLCD--RTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYI  161 (330)
T ss_dssp             -CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESB
T ss_pred             -CCCHHHHHHHcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEcccceeee
Confidence             999999987542  2599999999999999999999999   9999999999999998887     9999999998764


Q ss_pred             CCCCC-------cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhcc
Q 042435          276 VDSSN-------RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRL  348 (412)
Q Consensus       276 ~~~~~-------~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~  348 (412)
                      .....       .....||+.|+|||++.+..++.++|||||||++|||++|+.||....    ..........+.....
T Consensus       162 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~----~~~~~~~~~~i~~~~~  237 (330)
T 2izr_A          162 DPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLK----ADTLKERYQKIGDTKR  237 (330)
T ss_dssp             CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC----CSSHHHHHHHHHHHHH
T ss_pred             cCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccc----cccHHHHHHHHHhhhc
Confidence            33221       235679999999999999999999999999999999999999997321    0000011111111111


Q ss_pred             CCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          349 SPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       349 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ..+......... .+.+++..||+.||.+||+++++.+.|+++.
T Consensus       238 ~~~~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~  280 (330)
T 2izr_A          238 ATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLF  280 (330)
T ss_dssp             HSCHHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHH
T ss_pred             cCCHHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence            111100000112 5889999999999999999999999997653

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=1.1e-40  Score=333.88  Aligned_cols=233  Identities=22%  Similarity=0.321  Sum_probs=186.9

Q ss_pred             hhcCcccceeeeecCceEEEEEEeCCCcEEEEEec-------------------cCCccccceEEEecCc-eEEEEEEec
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-------------------HHSETEDSAFVVYSPQ-CMFFIYEYM  200 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-------------------~~~~~~~~~~~~~~~~-~~~lv~ey~  200 (412)
                      ..++|++.+.||+|+||.||+|.+. |+.||||.+                   +|+++.....++...+ ..++||||+
T Consensus       191 ~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~  269 (450)
T 1k9a_A          191 NMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM  269 (450)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCTTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECC
T ss_pred             ChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCchHHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEec
Confidence            3467899999999999999999984 789999965                   4677777777766554 799999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++|+|.++++.... ..+++..++.++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.....   
T Consensus       270 ~~g~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~---  342 (450)
T 1k9a_A          270 AKGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST---  342 (450)
T ss_dssp             TTCBHHHHHHHHCT-TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred             CCCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCccccccc---
Confidence            99999999976432 2378999999999999999999999   9999999999999999999999999999854322   


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      .....+++.|+|||.+.+..++.++|||||||++|||+| |+.||...       .... ....+......+.+...   
T Consensus       343 ~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~-------~~~~-~~~~i~~~~~~~~p~~~---  411 (450)
T 1k9a_A          343 QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI-------PLKD-VVPRVEKGYKMDAPDGC---  411 (450)
T ss_dssp             ----CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTS-------CTTT-HHHHHHTTCCCCCCTTC---
T ss_pred             ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-------CHHH-HHHHHHcCCCCCCCCcC---
Confidence            122357889999999999999999999999999999998 99998732       1111 22223232222222222   


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ...+.+++.+||+.||++|||+.++++.|+++.
T Consensus       412 ~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~  444 (450)
T 1k9a_A          412 PPAVYDVMKNCWHLDAATRPTFLQLREQLEHIR  444 (450)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence            234788999999999999999999999998865

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=1e-40  Score=324.77  Aligned_cols=232  Identities=19%  Similarity=0.258  Sum_probs=187.0

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEecCceEEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ..++|++.+.||+|+||.||+|... +|+.||+|.+                       +|+++......+.+.+..++|
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv  106 (362)
T 2bdw_A           27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV  106 (362)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            3568999999999999999999774 6899999964                       578888888888999999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC---CcEEEeecCCccc
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN---LEAFVADFGTVRL  273 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~---~~~kl~DfGla~~  273 (412)
                      |||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.+   +.+||+|||+++.
T Consensus       107 ~e~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~  180 (362)
T 2bdw_A          107 FDLVTGGELFEDIVARE---FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIE  180 (362)
T ss_dssp             ECCCCSCBHHHHHTTCS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBC
T ss_pred             EecCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcceE
Confidence            99999999998887553   589999999999999999999999   99999999999999865   4599999999987


Q ss_pred             cCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccc
Q 042435          274 LDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN  353 (412)
Q Consensus       274 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (412)
                      ..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+. 
T Consensus       181 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~-------~~~~~~~~i~~~~~~~~~-  251 (362)
T 2bdw_A          181 VNDSE-AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE-------DQHRLYAQIKAGAYDYPS-  251 (362)
T ss_dssp             CTTCC-SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHTCCCCCT-
T ss_pred             ecCCc-ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCC-------CHHHHHHHHHhCCCCCCc-
Confidence            65332 233457999999999999989999999999999999999999998632       111112222222222111 


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .........+.+++.+||+.||++|||+.|++++
T Consensus       252 ~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  285 (362)
T 2bdw_A          252 PEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV  285 (362)
T ss_dssp             TGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             ccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            1111122347899999999999999999999876

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=1.6e-41  Score=326.15  Aligned_cols=243  Identities=21%  Similarity=0.279  Sum_probs=193.5

Q ss_pred             HHHHhhcCcccceeeeecCceEEEEEEeCC------CcEEEEEec-----------------------cCCccccceEEE
Q 042435          137 NLIDATEYFHIRYCIGTGGYDSVYKAELPD------GKVVALKKL-----------------------HHSETEDSAFVV  187 (412)
Q Consensus       137 ~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~------~~~vAvK~l-----------------------~~~~~~~~~~~~  187 (412)
                      ++....++|++.+.||+|+||.||+|....      ...||+|.+                       +|+++......+
T Consensus        40 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~  119 (333)
T 2i1m_A           40 KWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGAC  119 (333)
T ss_dssp             GGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            344456789999999999999999998642      348999964                       578888888888


Q ss_pred             ecCceEEEEEEeccCCceeeeeccCcc-----------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEE
Q 042435          188 YSPQCMFFIYEYMERGSLFCVLRDDDE-----------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNIL  256 (412)
Q Consensus       188 ~~~~~~~lv~ey~~~gsL~~~l~~~~~-----------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NIL  256 (412)
                      ...+..++||||+++|+|.+++.....           ...+++..++.++.|++.||+|||++   +|+||||||+||+
T Consensus       120 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl  196 (333)
T 2i1m_A          120 THGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVL  196 (333)
T ss_dssp             CSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGCE
T ss_pred             ecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccceEE
Confidence            889999999999999999999875421           12479999999999999999999999   9999999999999


Q ss_pred             ecCCCcEEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccC
Q 042435          257 LNSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSS  333 (412)
Q Consensus       257 l~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~  333 (412)
                      ++.++.+||+|||+++........  .....+|+.|+|||.+.+..++.++||||||+++|||+| |..||...      
T Consensus       197 ~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~------  270 (333)
T 2i1m_A          197 LTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI------  270 (333)
T ss_dssp             EEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC------
T ss_pred             ECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCccc------
Confidence            999999999999999865443322  233457889999999988899999999999999999999 99998732      


Q ss_pred             CCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          334 SGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                       ..................+...   ...+.+++.+||+.||++|||+.|++++|+++.
T Consensus       271 -~~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~  325 (333)
T 2i1m_A          271 -LVNSKFYKLVKDGYQMAQPAFA---PKNIYSIMQACWALEPTHRPTFQQICSFLQEQA  325 (333)
T ss_dssp             -CSSHHHHHHHHHTCCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHhcCCCCCCCCCC---CHHHHHHHHHHhccChhhCcCHHHHHHHHHHHH
Confidence             1122233333333322222222   223788999999999999999999999998764

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=4.3e-41  Score=319.95  Aligned_cols=239  Identities=21%  Similarity=0.318  Sum_probs=193.4

Q ss_pred             hhcCcccceeeeecCceEEEEEEe------CCCcEEEEEec-----------------------cCCccccceEEEecCc
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL------PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQ  191 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~------~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~  191 (412)
                      ..++|++.+.||+|+||.||+|..      .+++.||+|.+                       +|+++......+...+
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~  100 (313)
T 1t46_A           21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (313)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence            456899999999999999999975      35789999964                       5777888888888889


Q ss_pred             eEEEEEEeccCCceeeeeccCcc---------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEE
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDE---------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNIL  256 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~---------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NIL  256 (412)
                      ..++||||+++|+|.+++.....               ...+++..+..++.|++.||+|||++   +++||||||+||+
T Consensus       101 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil  177 (313)
T 1t46_A          101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNIL  177 (313)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEE
T ss_pred             CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEE
Confidence            99999999999999999875432               12489999999999999999999999   9999999999999


Q ss_pred             ecCCCcEEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccC
Q 042435          257 LNSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSS  333 (412)
Q Consensus       257 l~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~  333 (412)
                      ++.++.+||+|||+++........  .....+|+.|+|||.+.+..++.++||||||+++|||+| |+.||...      
T Consensus       178 ~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~------  251 (313)
T 1t46_A          178 LTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM------  251 (313)
T ss_dssp             EETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC------
T ss_pred             EcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcc------
Confidence            999999999999999876544322  233457889999999988899999999999999999999 99998632      


Q ss_pred             CCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          334 SGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                       ..................+...   ...+.+++.+||+.||++|||+.|++++|+++.
T Consensus       252 -~~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~  306 (313)
T 1t46_A          252 -PVDSKFYKMIKEGFRMLSPEHA---PAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQI  306 (313)
T ss_dssp             -CSSHHHHHHHHHTCCCCCCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -cchhHHHHHhccCCCCCCcccC---CHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence             1122233333333332222222   223788999999999999999999999998765

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=2.3e-41  Score=324.60  Aligned_cols=232  Identities=21%  Similarity=0.271  Sum_probs=164.5

Q ss_pred             eeeeecCceEEEEEEeC-CCcEEEEEec-------------------cCCccccceEEEecCceEEEEEEeccCCceeee
Q 042435          149 YCIGTGGYDSVYKAELP-DGKVVALKKL-------------------HHSETEDSAFVVYSPQCMFFIYEYMERGSLFCV  208 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~gsL~~~  208 (412)
                      +.||+|+||.||+|... +++.||||.+                   .|+++.....++.+....++||||+++|+|.++
T Consensus        17 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~   96 (325)
T 3kn6_A           17 KPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFER   96 (325)
T ss_dssp             CCSEEETTEEEEEEEETTTCCEEEEEEEEGGGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHH
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEChhhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHHHH
Confidence            78999999999999874 6899999965                   288888888999999999999999999999999


Q ss_pred             eccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC---cEEEeecCCccccCCCCCCccccc
Q 042435          209 LRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL---EAFVADFGTVRLLDVDSSNRTLQA  285 (412)
Q Consensus       209 l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~---~~kl~DfGla~~~~~~~~~~~~~~  285 (412)
                      +....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++   .+||+|||+++.............
T Consensus        97 l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~  170 (325)
T 3kn6_A           97 IKKKK---HFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPC  170 (325)
T ss_dssp             HHHCS---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC---------
T ss_pred             HHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccccC
Confidence            87653   589999999999999999999999   999999999999997655   899999999987655444445567


Q ss_pred             ccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHH
Q 042435          286 GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVST  365 (412)
Q Consensus       286 gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (412)
                      ||+.|+|||++.+..++.++||||||+++|||++|+.||..................+.......+ ..........+.+
T Consensus       171 ~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~s~~~~~  249 (325)
T 3kn6_A          171 FTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFE-GEAWKNVSQEAKD  249 (325)
T ss_dssp             -------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCC-SHHHHTSCHHHHH
T ss_pred             CCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCC-cccccCCCHHHHH
Confidence            899999999999999999999999999999999999999743211000000111111111111111 1111222345889


Q ss_pred             HHHhcCcCCCCCCCCHHHHHHH
Q 042435          366 IALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       366 l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ++.+||+.||++|||++|++++
T Consensus       250 li~~~L~~dP~~Rpt~~ell~h  271 (325)
T 3kn6_A          250 LIQGLLTVDPNKRLKMSGLRYN  271 (325)
T ss_dssp             HHHHHHCCCTTTCCCTTTSTTC
T ss_pred             HHHHHCCCChhHCCCHHHHhcC
Confidence            9999999999999999999865

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=1.3e-40  Score=322.54  Aligned_cols=234  Identities=23%  Similarity=0.310  Sum_probs=178.4

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-------------------cCCccccceEEEecCceEEEEEEe
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ...++|++.+.||+|+||.||+|... +++.||||.+                   +|+++.....++...+..++||||
T Consensus        50 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~  129 (349)
T 2w4o_A           50 ALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLEL  129 (349)
T ss_dssp             CGGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------CHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             cccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEe
Confidence            34578999999999999999999875 5889999964                   467777777888889999999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC---CCcEEEeecCCccccCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS---NLEAFVADFGTVRLLDV  276 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~---~~~~kl~DfGla~~~~~  276 (412)
                      +++|+|.+++....   .+++..+..++.|++.||+|||+.   +|+||||||+|||++.   ++.+||+|||+++....
T Consensus       130 ~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~  203 (349)
T 2w4o_A          130 VTGGELFDRIVEKG---YYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEH  203 (349)
T ss_dssp             CCSCBHHHHHTTCS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC-------
T ss_pred             CCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCccccccCc
Confidence            99999999887654   589999999999999999999999   9999999999999975   88999999999986543


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .. ......||+.|+|||++.+..++.++|||||||++|||++|+.||....      ........+........ ....
T Consensus       204 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~------~~~~~~~~i~~~~~~~~-~~~~  275 (349)
T 2w4o_A          204 QV-LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDER------GDQFMFRRILNCEYYFI-SPWW  275 (349)
T ss_dssp             ----------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTT------CHHHHHHHHHTTCCCCC-TTTT
T ss_pred             cc-ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCc------ccHHHHHHHHhCCCccC-Cchh
Confidence            22 2234578999999999999899999999999999999999999986321      11111222222221111 0111


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ......+.+++.+||+.||++|||+.|++++
T Consensus       276 ~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  306 (349)
T 2w4o_A          276 DEVSLNAKDLVRKLIVLDPKKRLTTFQALQH  306 (349)
T ss_dssp             TTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             hhCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            1122347899999999999999999999985

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=8.7e-41  Score=324.60  Aligned_cols=186  Identities=19%  Similarity=0.238  Sum_probs=161.7

Q ss_pred             cccHHHHHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-------------------------CCccccceE
Q 042435          132 KILYENLIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-------------------------HSETEDSAF  185 (412)
Q Consensus       132 ~~~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-------------------------~~~~~~~~~  185 (412)
                      .+++.+-....++|++.++||+|+||.||+|.. .+++.||||.++                         |+++.....
T Consensus        24 ~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~  103 (360)
T 3llt_A           24 HFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYHG  103 (360)
T ss_dssp             SCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEE
T ss_pred             eeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeecccc
Confidence            445555556678999999999999999999987 578999999752                         677778888


Q ss_pred             EEecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC------
Q 042435          186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS------  259 (412)
Q Consensus       186 ~~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~------  259 (412)
                      .+...+..++||||+ +++|.+++...... .+++..+..++.|++.||+|||++   +|+||||||+|||++.      
T Consensus       104 ~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~-~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~  178 (360)
T 3llt_A          104 KFMYYDHMCLIFEPL-GPSLYEIITRNNYN-GFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYFEKS  178 (360)
T ss_dssp             EEEETTEEEEEECCC-CCBHHHHHHHTTTC-CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTTCCEE
T ss_pred             eeeECCeeEEEEcCC-CCCHHHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEcccccccc
Confidence            888889999999999 89999998765322 489999999999999999999999   9999999999999975      


Q ss_pred             -------------------CCcEEEeecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhC
Q 042435          260 -------------------NLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMG  320 (412)
Q Consensus       260 -------------------~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg  320 (412)
                                         ++.+||+|||+++.....   .....||+.|+|||++.+..++.++|||||||++|||+||
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g  255 (360)
T 3llt_A          179 LITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY---HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTG  255 (360)
T ss_dssp             EEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC---CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHS
T ss_pred             ccchhcccccccccccccCCCCEEEEeccCceecCCC---CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHC
Confidence                               789999999999864432   2345789999999999999999999999999999999999


Q ss_pred             CCCcc
Q 042435          321 THPGE  325 (412)
Q Consensus       321 ~~P~~  325 (412)
                      +.||.
T Consensus       256 ~~pf~  260 (360)
T 3llt_A          256 SLLFR  260 (360)
T ss_dssp             SCSCC
T ss_pred             CCCCC
Confidence            99996

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=3.2e-41  Score=324.37  Aligned_cols=248  Identities=22%  Similarity=0.334  Sum_probs=183.0

Q ss_pred             hcCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEE-----ecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVV-----YSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~-----~~~~~~~lv  196 (412)
                      .++|++.+.||+|+||.||+|+. +++.||||.+                    +|+++......+     ......++|
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv   90 (336)
T 3g2f_A           12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLV   90 (336)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEE
T ss_pred             hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccchhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEE
Confidence            46799999999999999999987 7899999974                    456666554321     123467899


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCC------CCCcEEeCCCCCCEEecCCCcEEEeecCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC------TPSIVHRDISSNNILLNSNLEAFVADFGT  270 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~------~~~ivHrDlkp~NILl~~~~~~kl~DfGl  270 (412)
                      |||+++|+|.+++....    .++..+..++.|++.||+|||+.+      .++|+||||||+|||++.++.+||+|||+
T Consensus        91 ~e~~~~g~L~~~l~~~~----~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~  166 (336)
T 3g2f_A           91 MEYYPNGSLXKYLSLHT----SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGL  166 (336)
T ss_dssp             ECCCTTCBHHHHHHHCC----BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTT
T ss_pred             EecCCCCcHHHHHhhcc----cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccc
Confidence            99999999999996553    689999999999999999999763      33899999999999999999999999999


Q ss_pred             ccccCCCC--------CCcccccccccccccccccC-------cccCcccccHHHHHHHHHHHhCCCCcccccccccCC-
Q 042435          271 VRLLDVDS--------SNRTLQAGTYGYIALELVYT-------MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSS-  334 (412)
Q Consensus       271 a~~~~~~~--------~~~~~~~gt~~y~aPE~~~~-------~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~-  334 (412)
                      ++......        .......||+.|+|||++.+       ..++.++|||||||++|||++|..|+.......... 
T Consensus       167 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~  246 (336)
T 3g2f_A          167 SMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQM  246 (336)
T ss_dssp             CEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCC
T ss_pred             eeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHH
Confidence            98764321        11234469999999999976       467789999999999999999988764321111000 


Q ss_pred             --------CCc-chhhHHh-hhccCCccch---hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          335 --------GPK-IMLIDIL-YQRLSPPINQ---KIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       335 --------~~~-~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                              .+. ....... .....+..+.   ........+.+++.+||+.||++|||+.|+++.|+++...
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~  319 (336)
T 3g2f_A          247 AFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMI  319 (336)
T ss_dssp             TTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             hhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHH
Confidence                    000 0001111 1111111111   1112334588999999999999999999999999887643

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=1.9e-40  Score=327.13  Aligned_cols=238  Identities=22%  Similarity=0.279  Sum_probs=177.9

Q ss_pred             hcCcccc-eeeeecCceEEEEEEeC-CCcEEEEEec-----------------cCCccccceEEEec----CceEEEEEE
Q 042435          142 TEYFHIR-YCIGTGGYDSVYKAELP-DGKVVALKKL-----------------HHSETEDSAFVVYS----PQCMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~-~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------~~~~~~~~~~~~~~----~~~~~lv~e  198 (412)
                      .++|.+. ++||+|+||+||+|... +|+.||||.+                 +|+++.....++..    .+..++|||
T Consensus        60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E  139 (400)
T 1nxk_A           60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVME  139 (400)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcchhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEE
Confidence            3567665 68999999999999774 6899999975                 46777776666543    667899999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC---CCcEEEeecCCccccC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS---NLEAFVADFGTVRLLD  275 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~---~~~~kl~DfGla~~~~  275 (412)
                      |+++|+|.+++..... ..+++..+..++.|++.||+|||++   +|+||||||+|||++.   ++.+||+|||+++...
T Consensus       140 ~~~gg~L~~~l~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~  215 (400)
T 1nxk_A          140 CLDGGELFSRIQDRGD-QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  215 (400)
T ss_dssp             CCCSEEHHHHHHCC----CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred             eCCCCcHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEecccccccC
Confidence            9999999999976532 2589999999999999999999998   9999999999999987   7899999999998654


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.......   ........+.......+. ..
T Consensus       216 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~---~~~~~~~~i~~~~~~~~~-~~  290 (400)
T 1nxk_A          216 SHN-SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA---ISPGMKTRIRMGQYEFPN-PE  290 (400)
T ss_dssp             ------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCS---SCCSHHHHHHHTCCCCCT-TT
T ss_pred             CCC-ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCcccc---ccHHHHHHHHcCcccCCC-cc
Confidence            322 2345578999999999999999999999999999999999999997432111   011111222222222111 01


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      .......+.+++.+||+.||++|||+.|++++-
T Consensus       291 ~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp  323 (400)
T 1nxk_A          291 WSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHP  323 (400)
T ss_dssp             TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSH
T ss_pred             cccCCHHHHHHHHHHCCCChhHCcCHHHHhcCc
Confidence            111223478999999999999999999999863

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=2.6e-41  Score=319.19  Aligned_cols=244  Identities=21%  Similarity=0.325  Sum_probs=184.6

Q ss_pred             hcCcccceeeeecCceEEEEEEe-----CCCcEEEEEec---------------------cCCccccceEEEec--CceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-----PDGKVVALKKL---------------------HHSETEDSAFVVYS--PQCM  193 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-----~~~~~vAvK~l---------------------~~~~~~~~~~~~~~--~~~~  193 (412)
                      .++|++.+.||+|+||.||+|++     .+++.||||++                     +|+++.....++..  ....
T Consensus         9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   88 (295)
T 3ugc_A            9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL   88 (295)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred             HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence            36789999999999999999984     36899999965                     46677666666644  3458


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ++||||+++|+|.+++.....  .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.
T Consensus        89 ~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~  163 (295)
T 3ugc_A           89 KLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKV  163 (295)
T ss_dssp             EEEEECCTTCBHHHHHHHCGG--GCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSCC-
T ss_pred             EEEEEeCCCCCHHHHHHhccc--ccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCccccc
Confidence            999999999999999976542  489999999999999999999998   999999999999999999999999999987


Q ss_pred             cCCCCC---CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccccc-----ccCCCCcc---hhhH
Q 042435          274 LDVDSS---NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSL-----SSSSGPKI---MLID  342 (412)
Q Consensus       274 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~-----~~~~~~~~---~~~~  342 (412)
                      ......   ......++..|+|||.+.+..++.++||||||+++|||+||..|+......     ........   ...+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (295)
T 3ugc_A          164 LPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE  243 (295)
T ss_dssp             ------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHH
T ss_pred             ccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHH
Confidence            644322   123345778899999999899999999999999999999999997632110     01111110   1112


Q ss_pred             HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      .+......+.+...   ...+.+++.+||+.||++|||+.|+++.|+++..
T Consensus       244 ~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~  291 (295)
T 3ugc_A          244 LLKNNGRLPRPDGC---PDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD  291 (295)
T ss_dssp             HHHTTCCCCCCTTC---CHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHhccCcCCCCcCc---CHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHH
Confidence            22222222222222   2348889999999999999999999999988753

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.8e-41  Score=330.75  Aligned_cols=239  Identities=22%  Similarity=0.291  Sum_probs=190.5

Q ss_pred             hcCcccceeeeecCceEEEEEEeC------CCcEEEEEec----------------------cCCccccceEEEecCceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKL----------------------HHSETEDSAFVVYSPQCM  193 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~  193 (412)
                      .++|++.+.||+|+||.||+|.+.      +++.||||++                      +|+++......+......
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~  149 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  149 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            367999999999999999999853      4678999975                      578888888888888899


Q ss_pred             EEEEEeccCCceeeeeccCcc----cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC---cEEEe
Q 042435          194 FFIYEYMERGSLFCVLRDDDE----AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL---EAFVA  266 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~---~~kl~  266 (412)
                      ++||||+++|+|.+++.....    ...+++.+++.++.|++.||+|||++   +|+||||||+|||++.++   .+||+
T Consensus       150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kL~  226 (367)
T 3l9p_A          150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIG  226 (367)
T ss_dssp             EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred             EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceEEEC
Confidence            999999999999999875431    23589999999999999999999999   999999999999998544   59999


Q ss_pred             ecCCccccCCC--CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHH
Q 042435          267 DFGTVRLLDVD--SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDI  343 (412)
Q Consensus       267 DfGla~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~  343 (412)
                      |||+++.....  ........||+.|+|||++.+..++.++|||||||++|||+| |..||...        ......+.
T Consensus       227 DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~--------~~~~~~~~  298 (367)
T 3l9p_A          227 DFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK--------SNQEVLEF  298 (367)
T ss_dssp             CCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--------CHHHHHHH
T ss_pred             CCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--------CHHHHHHH
Confidence            99999754322  122234567899999999998899999999999999999998 99998732        11122233


Q ss_pred             hhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          344 LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                      +........+...   ...+.+++.+||+.||++|||+.|++++|+.+...
T Consensus       299 i~~~~~~~~~~~~---~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~  346 (367)
T 3l9p_A          299 VTSGGRMDPPKNC---PGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD  346 (367)
T ss_dssp             HHTTCCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHcCCCCCCCccC---CHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence            3222222222222   22378899999999999999999999999887654

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=2.3e-40  Score=316.66  Aligned_cols=225  Identities=26%  Similarity=0.314  Sum_probs=186.6

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      .++|++.+.||+|+||.||+|+.. +|+.||+|.+                        +|+++......+.+.+..++|
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv   84 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   84 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence            367999999999999999999874 6999999964                        577888888888899999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++....
T Consensus        85 ~e~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~  158 (318)
T 1fot_A           85 MDYIEGGELFSLLRKSQ---RFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPD  158 (318)
T ss_dssp             ECCCCSCBHHHHHHHTS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSS
T ss_pred             EeCCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceecCC
Confidence            99999999999987643   589999999999999999999998   999999999999999999999999999986543


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .   .....||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  ...
T Consensus       159 ~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~-------~~~~~~~~i~~~~~~~p--~~~  226 (318)
T 1fot_A          159 V---TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS-------NTMKTYEKILNAELRFP--PFF  226 (318)
T ss_dssp             C---BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS-------SHHHHHHHHHHCCCCCC--TTS
T ss_pred             c---cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC-------CHHHHHHHHHhCCCCCC--CCC
Confidence            2   23457999999999999999999999999999999999999998632       11112223333332221  111


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                         ...+.+++.+||+.||++||     +++|++++
T Consensus       227 ---~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~h  259 (318)
T 1fot_A          227 ---NEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH  259 (318)
T ss_dssp             ---CHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred             ---CHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcC
Confidence               12378899999999999999     89999865

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=1.6e-40  Score=318.92  Aligned_cols=228  Identities=24%  Similarity=0.347  Sum_probs=180.2

Q ss_pred             hcCcccceeeeecCceEEEEEEe----CCCcEEEEEec-------------------------cCCccccceEEEecCce
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL----PDGKVVALKKL-------------------------HHSETEDSAFVVYSPQC  192 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~----~~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~  192 (412)
                      .++|++.+.||+|+||.||+|+.    .+|+.||+|.+                         +|+++......+...+.
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   95 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK   95 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence            46799999999999999999987    47899999965                         35566666667888889


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .++||||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~  169 (327)
T 3a62_A           96 LYLILEYLSGGELFMQLEREG---IFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCK  169 (327)
T ss_dssp             EEEEEECCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC-
T ss_pred             EEEEEeCCCCCcHHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCccc
Confidence            999999999999999886543   588999999999999999999999   99999999999999999999999999998


Q ss_pred             ccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          273 LLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       273 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      .............||+.|+|||++.+..++.++||||||+++|||++|+.||...       ........+.......+ 
T Consensus       170 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~-------~~~~~~~~i~~~~~~~p-  241 (327)
T 3a62_A          170 ESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGE-------NRKKTIDKILKCKLNLP-  241 (327)
T ss_dssp             ---------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS-------SHHHHHHHHHHTCCCCC-
T ss_pred             ccccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCC-------CHHHHHHHHHhCCCCCC-
Confidence            6543333334567999999999999989999999999999999999999998732       11112222333222221 


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                       ...   ...+.+++.+||+.||++||     ++.|++++
T Consensus       242 -~~~---~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~h  277 (327)
T 3a62_A          242 -PYL---TQEARDLLKKLLKRNAASRLGAGPGDAGEVQAH  277 (327)
T ss_dssp             -TTS---CHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHS
T ss_pred             -CCC---CHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcC
Confidence             111   12378899999999999999     78888775

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-40  Score=316.98  Aligned_cols=238  Identities=23%  Similarity=0.382  Sum_probs=180.0

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec-------------------cCCccccceEEEecCceEEEEEEeccCC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-------------------HHSETEDSAFVVYSPQCMFFIYEYMERG  203 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~g  203 (412)
                      ++|++.+.||+|+||.||+|.+ .++.||+|.+                   +|+++......+.  +..++||||+++|
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~~~~   84 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYAEGG   84 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSSTTHHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECCTTC
T ss_pred             hHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecChhHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcCCCC
Confidence            5688999999999999999988 4788999976                   4666666555444  4579999999999


Q ss_pred             ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCc-EEEeecCCccccCCCCCCcc
Q 042435          204 SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLE-AFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       204 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~-~kl~DfGla~~~~~~~~~~~  282 (412)
                      +|.+++........+++..++.++.|+++||+|||+.+..+|+||||||+||+++.++. +||+|||+++.....   ..
T Consensus        85 ~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~---~~  161 (307)
T 2eva_A           85 SLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH---MT  161 (307)
T ss_dssp             BHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------------
T ss_pred             CHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc---cc
Confidence            99999987654445889999999999999999999943348999999999999988876 799999999755322   22


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...||+.|+|||++.+..++.++||||||+++|||+||+.||....      ...............++.....   ...
T Consensus       162 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~---~~~  232 (307)
T 2eva_A          162 NNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIG------GPAFRIMWAVHNGTRPPLIKNL---PKP  232 (307)
T ss_dssp             ---CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTC------SSHHHHHHHHHTTCCCCCBTTC---CHH
T ss_pred             cCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhC------ccHHHHHHHHhcCCCCCccccc---CHH
Confidence            3468999999999999999999999999999999999999987321      1111111111122222222222   223


Q ss_pred             HHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCC
Q 042435          363 VSTIALACLRSKPKSRPTMQRISQELEGKTPMK  395 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  395 (412)
                      +.+++.+||+.||++|||++|+++.|+.+....
T Consensus       233 l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  265 (307)
T 2eva_A          233 IESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYF  265 (307)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhc
Confidence            788999999999999999999999998876543

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=8.9e-41  Score=334.72  Aligned_cols=240  Identities=24%  Similarity=0.358  Sum_probs=186.9

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEe
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ...++|++.+.||+|+||.||+|.+.++..||||.+                    +|+++.....++.. +..++||||
T Consensus       181 i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~  259 (452)
T 1fmk_A          181 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY  259 (452)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred             cChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehh
Confidence            345678999999999999999999988889999975                    46677766666654 678999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++|+|.+++..... ..+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.......
T Consensus       260 ~~~gsL~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~  335 (452)
T 1fmk_A          260 MSKGSLLDFLKGETG-KYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY  335 (452)
T ss_dssp             CTTCBHHHHHSHHHH-TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC-------
T ss_pred             hcCCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccceecCCCce
Confidence            999999999975322 2489999999999999999999999   999999999999999999999999999987643321


Q ss_pred             -CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          280 -NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       280 -~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                       ......+++.|+|||.+.+..++.++||||||+++|||+| |+.||....        .....+.+......+.+... 
T Consensus       336 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~--------~~~~~~~i~~~~~~~~~~~~-  406 (452)
T 1fmk_A          336 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--------NREVLDQVERGYRMPCPPEC-  406 (452)
T ss_dssp             -------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC--------HHHHHHHHHTTCCCCCCTTS-
T ss_pred             ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCC--------HHHHHHHHHcCCCCCCCCCC-
Confidence             2233457789999999998899999999999999999999 999986321        11122222222222222222 


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCC
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMK  395 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  395 (412)
                        ...+.+++.+||+.||++|||++++++.|+++....
T Consensus       407 --~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~  442 (452)
T 1fmk_A          407 --PESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST  442 (452)
T ss_dssp             --CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCS
T ss_pred             --CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccC
Confidence              224788999999999999999999999999986543

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=1.3e-40  Score=309.64  Aligned_cols=231  Identities=18%  Similarity=0.255  Sum_probs=184.5

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec-----------------------cCCccccceEEEecC--ceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-----------------------HHSETEDSAFVVYSP--QCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~--~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||+|.+. ++.||||.+                       +|+++.....++...  +..++||
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT   88 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred             HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence            57899999999999999999984 889999965                       466666667777766  7889999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCC--cEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS--IVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~--ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||+++|+|.+++..... ..+++..+..++.|++.||+|||++   +  ++||||||+||+++.++.++++|||++....
T Consensus        89 e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~  164 (271)
T 3kmu_A           89 HWMPYGSLYNVLHEGTN-FVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ  164 (271)
T ss_dssp             ECCTTCBHHHHHHSCSS-CCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS
T ss_pred             cccCCCcHHHHHhhccc-CCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEeccceeeec
Confidence            99999999999986542 2489999999999999999999998   7  9999999999999999999999888775432


Q ss_pred             CCCCCcccccccccccccccccCcccCc---ccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTE---KCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~---ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      .     ....||+.|+|||.+.+..++.   ++||||||+++|||++|+.||...       ...............+..
T Consensus       165 ~-----~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~-------~~~~~~~~~~~~~~~~~~  232 (271)
T 3kmu_A          165 S-----PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADL-------SNMEIGMKVALEGLRPTI  232 (271)
T ss_dssp             C-----TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTS-------CHHHHHHHHHHSCCCCCC
T ss_pred             c-----cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCcccc-------ChHHHHHHHHhcCCCCCC
Confidence            2     2346899999999998765544   799999999999999999998732       111112222323333222


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      +....   ..+.+++.+||+.||++|||++|+++.|+++..
T Consensus       233 ~~~~~---~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~  270 (271)
T 3kmu_A          233 PPGIS---PHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD  270 (271)
T ss_dssp             CTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred             CCCCC---HHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence            22222   237889999999999999999999999998753

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-40  Score=316.40  Aligned_cols=234  Identities=24%  Similarity=0.260  Sum_probs=180.8

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------------CCccccceEEEecC
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------------HSETEDSAFVVYSP  190 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------------~~~~~~~~~~~~~~  190 (412)
                      .+++|++.+.||+|+||+||+|.. .+++.||||.++                             |+++.....++...
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            367899999999999999999986 578999999763                             67777776666554


Q ss_pred             c-----eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEE
Q 042435          191 Q-----CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFV  265 (412)
Q Consensus       191 ~-----~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl  265 (412)
                      .     ..++||||+. |+|.+++...... .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||
T Consensus        87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~-~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl  161 (308)
T 3g33_A           87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPP-GLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKL  161 (308)
T ss_dssp             CSSSEEEEEEEEECCC-CBHHHHHHTCCTT-CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEE
T ss_pred             CCCCceeEEEEehhhh-cCHHHHHhhccCC-CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEE
Confidence            4     5899999996 6999988765432 389999999999999999999999   9999999999999999999999


Q ss_pred             eecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhh
Q 042435          266 ADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY  345 (412)
Q Consensus       266 ~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~  345 (412)
                      +|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.....       ......+..
T Consensus       162 ~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~-------~~~~~~i~~  233 (308)
T 3g33_A          162 ADFGLARIYSYQM-ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSE-------ADQLGKIFD  233 (308)
T ss_dssp             CSCSCTTTSTTCC-CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSH-------HHHHHHHHH
T ss_pred             eeCccccccCCCc-ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCH-------HHHHHHHHH
Confidence            9999998664332 23456789999999999999999999999999999999999999863211       000111110


Q ss_pred             h------------------ccC----CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 Q------------------RLS----PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ~------------------~~~----~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .                  ...    .+...........+.+++.+||+.||++|||+.|++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  297 (308)
T 3g33_A          234 LIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH  297 (308)
T ss_dssp             HHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence            0                  000    00000001112347889999999999999999999875

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=2.2e-40  Score=318.74  Aligned_cols=238  Identities=22%  Similarity=0.329  Sum_probs=190.1

Q ss_pred             hcCcccceeeeecCceEEEEEEeC--------CCcEEEEEec-----------------------cCCccccceEEEecC
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP--------DGKVVALKKL-----------------------HHSETEDSAFVVYSP  190 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~--------~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~  190 (412)
                      .++|++.+.||+|+||.||+|...        +++.||+|.+                       +|+++......+...
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  113 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  113 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence            468999999999999999999863        4778999975                       577777778888888


Q ss_pred             ceEEEEEEeccCCceeeeeccCcc-------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDE-------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL  257 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl  257 (412)
                      +..++||||+++|+|.+++.....             ...+++..++.++.|++.||+|||+.   +|+||||||+||++
T Consensus       114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll  190 (334)
T 2pvf_A          114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLV  190 (334)
T ss_dssp             SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEE
T ss_pred             CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccceEEE
Confidence            999999999999999999876431             12489999999999999999999999   99999999999999


Q ss_pred             cCCCcEEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCC
Q 042435          258 NSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSS  334 (412)
Q Consensus       258 ~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~  334 (412)
                      +.++.+||+|||+++........  .....+|+.|+|||++.+..++.++||||||+++|||+| |+.||...       
T Consensus       191 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~-------  263 (334)
T 2pvf_A          191 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI-------  263 (334)
T ss_dssp             CTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC-------
T ss_pred             cCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcC-------
Confidence            99999999999999866543221  233456789999999988889999999999999999999 99998632       


Q ss_pred             CCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          335 GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                       ........+........+...   ...+.+++.+||+.||++|||+.|+++.|+++..
T Consensus       264 -~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~  318 (334)
T 2pvf_A          264 -PVEELFKLLKEGHRMDKPANC---TNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILT  318 (334)
T ss_dssp             -CHHHHHHHHHHTCCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHhcCCCCCCCccC---CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence             111122222222222222222   2247889999999999999999999999998754

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.4e-40  Score=320.36  Aligned_cols=226  Identities=22%  Similarity=0.332  Sum_probs=182.8

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      .++|.+.+.||+|+||.||+|.. .+++.||+|.+                        +|+++.....++...+..++|
T Consensus         8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv   87 (336)
T 3h4j_B            8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV   87 (336)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            36799999999999999999986 67899999953                        578888888889999999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+ +|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||+++++.+||+|||+++....
T Consensus        88 ~E~~-~g~l~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~  160 (336)
T 3h4j_B           88 IEYA-GGELFDYIVEKK---RMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMTD  160 (336)
T ss_dssp             ECCC-CEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTTT
T ss_pred             EECC-CCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceeccC
Confidence            9999 689988876543   589999999999999999999999   999999999999999999999999999986544


Q ss_pred             CCCCcccccccccccccccccCccc-CcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVV-TEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~-s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      .. ......||+.|+|||++.+..+ +.++|||||||++|||++|+.||+......       ....+......  .+..
T Consensus       161 ~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~-------~~~~i~~~~~~--~p~~  230 (336)
T 3h4j_B          161 GN-FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPN-------LFKKVNSCVYV--MPDF  230 (336)
T ss_dssp             SB-TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTT-------CBCCCCSSCCC--CCTT
T ss_pred             Cc-ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHH-------HHHHHHcCCCC--Cccc
Confidence            32 2234579999999999988776 689999999999999999999997421100       00000000011  1111


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .   ...+.+++.+||+.||++|||++|++++
T Consensus       231 ~---s~~~~~li~~~L~~dP~~Rpt~~eil~h  259 (336)
T 3h4j_B          231 L---SPGAQSLIRRMIVADPMQRITIQEIRRD  259 (336)
T ss_dssp             S---CHHHHHHHHTTSCSSGGGSCCHHHHTTC
T ss_pred             C---CHHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence            1   1237789999999999999999999875

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=8.6e-41  Score=319.72  Aligned_cols=244  Identities=22%  Similarity=0.340  Sum_probs=177.9

Q ss_pred             HHHHhhcCcccceeeeecCceEEEEEEeCCC----cEEEEEec-----------------------cCCccccceEEEec
Q 042435          137 NLIDATEYFHIRYCIGTGGYDSVYKAELPDG----KVVALKKL-----------------------HHSETEDSAFVVYS  189 (412)
Q Consensus       137 ~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~----~~vAvK~l-----------------------~~~~~~~~~~~~~~  189 (412)
                      ++....++|++.+.||+|+||.||+|.....    ..||||.+                       +|+++.....++..
T Consensus        17 ~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   96 (323)
T 3qup_A           17 DVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLR   96 (323)
T ss_dssp             TTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEEC
T ss_pred             hcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeec
Confidence            3444567899999999999999999987543    27999965                       46677777777666


Q ss_pred             CceE------EEEEEeccCCceeeeeccCcc---cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC
Q 042435          190 PQCM------FFIYEYMERGSLFCVLRDDDE---AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN  260 (412)
Q Consensus       190 ~~~~------~lv~ey~~~gsL~~~l~~~~~---~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~  260 (412)
                      .+..      ++||||+++|+|.+++.....   ...+++..+..++.|++.||+|||++   +|+||||||+||+++.+
T Consensus        97 ~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~  173 (323)
T 3qup_A           97 SRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAED  173 (323)
T ss_dssp             C-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTT
T ss_pred             cccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCC
Confidence            5544      999999999999998864321   12589999999999999999999999   99999999999999999


Q ss_pred             CcEEEeecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCc
Q 042435          261 LEAFVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPK  337 (412)
Q Consensus       261 ~~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~  337 (412)
                      +.+||+|||+++.......  ......+++.|+|||.+.+..++.++||||||+++|||++ |+.||...       ...
T Consensus       174 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~-------~~~  246 (323)
T 3qup_A          174 MTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGI-------ENA  246 (323)
T ss_dssp             SCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-------CGG
T ss_pred             CCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCcccc-------ChH
Confidence            9999999999986644322  1233456789999999999899999999999999999999 89998732       111


Q ss_pred             chhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          338 IMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                       .....+........+...   ...+.+++.+||+.||++|||+.|+++.|+++...
T Consensus       247 -~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~  299 (323)
T 3qup_A          247 -EIYNYLIGGNRLKQPPEC---MEEVYDLMYQCWSADPKQRPSFTCLRMELENILGH  299 (323)
T ss_dssp             -GHHHHHHTTCCCCCCTTC---CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             -HHHHHHhcCCCCCCCCcc---CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence             122222222111111222   22478999999999999999999999999987643

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=3.2e-40  Score=319.75  Aligned_cols=225  Identities=19%  Similarity=0.252  Sum_probs=186.1

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      .++|++.+.||+|+||.||+|... +|+.||+|.+                        +|+++......+.+.+..++|
T Consensus        40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  119 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence            367999999999999999999874 6999999964                        467777777888889999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++....
T Consensus       120 ~e~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~  193 (350)
T 1rdq_E          120 MEYVAGGEMFSHLRRIG---RFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG  193 (350)
T ss_dssp             EECCTTCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             EcCCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceeccC
Confidence            99999999999987543   589999999999999999999999   999999999999999999999999999986543


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .   .....||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  ...
T Consensus       194 ~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-------~~~~~~~~i~~~~~~~p--~~~  261 (350)
T 1rdq_E          194 R---TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD-------QPIQIYEKIVSGKVRFP--SHF  261 (350)
T ss_dssp             C---BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHCCCCCC--TTC
T ss_pred             C---cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCC-------CHHHHHHHHHcCCCCCC--CCC
Confidence            2   23457999999999999999999999999999999999999998732       11112222333322221  111


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCC-----HHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPT-----MQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  387 (412)
                         ...+.+++.+||+.||++||+     ++|++++
T Consensus       262 ---~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h  294 (350)
T 1rdq_E          262 ---SSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNH  294 (350)
T ss_dssp             ---CHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred             ---CHHHHHHHHHHhhcCHHhccCCccCCHHHHHhC
Confidence               223788999999999999998     8888765

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=1.2e-40  Score=312.54  Aligned_cols=234  Identities=22%  Similarity=0.319  Sum_probs=175.2

Q ss_pred             hcCcccceeeeecCceEEEEEEeCC----CcEEEEEec----------------------cCCccccceEEEecCceEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPD----GKVVALKKL----------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~----~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      .++|++.+.||+|+||.||+|....    +..||+|.+                      +|+++.....++ ..+..++
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~~~~l   92 (281)
T 1mp8_A           14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI-TENPVWI   92 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-CSSSCEE
T ss_pred             hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEE-ccCccEE
Confidence            4679999999999999999997743    557999964                      467777766665 4567899


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||||+++|+|.+++....  ..+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|||+++...
T Consensus        93 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  167 (281)
T 1mp8_A           93 IMELCTLGELRSFLQVRK--YSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYME  167 (281)
T ss_dssp             EEECCTTEEHHHHHHHTT--TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC--------
T ss_pred             EEecCCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECccccccccC
Confidence            999999999999987543  2489999999999999999999999   99999999999999999999999999998764


Q ss_pred             CCCC-CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccc
Q 042435          276 VDSS-NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN  353 (412)
Q Consensus       276 ~~~~-~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (412)
                      .... ......+|+.|+|||.+.+..++.++||||||+++|||++ |..||...       .... ....+......+.+
T Consensus       168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~-------~~~~-~~~~i~~~~~~~~~  239 (281)
T 1mp8_A          168 DSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV-------KNND-VIGRIENGERLPMP  239 (281)
T ss_dssp             -----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTC-------CGGG-HHHHHHTTCCCCCC
T ss_pred             cccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcC-------CHHH-HHHHHHcCCCCCCC
Confidence            4322 1233456789999999988899999999999999999997 99998732       1111 22222222112222


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ...   ...+.+++.+||+.||++|||+.|+++.|+++.
T Consensus       240 ~~~---~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~  275 (281)
T 1mp8_A          240 PNC---PPTLYSLMTKCWAYDPSRRPRFTELKAQLSTIL  275 (281)
T ss_dssp             TTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCC---CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            222   223788999999999999999999999998764

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=4.8e-40  Score=309.11  Aligned_cols=231  Identities=29%  Similarity=0.413  Sum_probs=180.6

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------------------cCCccccceEEEecCce
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------------HHSETEDSAFVVYSPQC  192 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------------~~~~~~~~~~~~~~~~~  192 (412)
                      .++|++.+.||+|+||.||+|.. .+++.||+|.+                            +|+++......+.+.. 
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-   96 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-   96 (287)
T ss_dssp             STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred             hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence            36799999999999999999987 57999999976                            3455555555554443 


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCC--cEEeCCCCCCEEecCCCc-----EEE
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS--IVHRDISSNNILLNSNLE-----AFV  265 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~--ivHrDlkp~NILl~~~~~-----~kl  265 (412)
                       ++||||+++|+|.+++....  ..+++..+..++.|++.||+|||++   +  |+||||||+||+++.++.     +||
T Consensus        97 -~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~~kl  170 (287)
T 4f0f_A           97 -RMVMEFVPCGDLYHRLLDKA--HPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVCAKV  170 (287)
T ss_dssp             -EEEEECCTTCBHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCCEEE
T ss_pred             -eEEEEecCCCCHHHHHhccc--CCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCceeEEe
Confidence             79999999999988886543  2589999999999999999999998   7  999999999999987776     999


Q ss_pred             eecCCccccCCCCCCcccccccccccccccc--cCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcch-hhH
Q 042435          266 ADFGTVRLLDVDSSNRTLQAGTYGYIALELV--YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIM-LID  342 (412)
Q Consensus       266 ~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~--~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~-~~~  342 (412)
                      +|||+++....   ......||+.|+|||++  ....++.++||||||+++|||++|+.||....      ..... ...
T Consensus       171 ~Dfg~~~~~~~---~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~------~~~~~~~~~  241 (287)
T 4f0f_A          171 ADFGLSQQSVH---SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYS------YGKIKFINM  241 (287)
T ss_dssp             CCCTTCBCCSS---CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCC------CCHHHHHHH
T ss_pred             CCCCccccccc---cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCcccc------ccHHHHHHH
Confidence            99999975432   23445789999999998  45568899999999999999999999987321      11111 112


Q ss_pred             HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      .......+..+...   ...+.+++.+||+.||++|||++|+++.|+++
T Consensus       242 ~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          242 IREEGLRPTIPEDC---PPRLRNVIELCWSGDPKKRPHFSYIVKELSEL  287 (287)
T ss_dssp             HHHSCCCCCCCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred             HhccCCCCCCCccc---CHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence            22222222222222   22478999999999999999999999999864

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=1.2e-40  Score=313.81  Aligned_cols=239  Identities=22%  Similarity=0.270  Sum_probs=177.4

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ++|++.+.||+|+||.||+|...+|+.||+|++                       +|+++......+...+..++||||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence            578999999999999999999888999999965                       466777777778888999999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++ +|.+++.....  .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++.......
T Consensus        82 ~~~-~l~~~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  155 (288)
T 1ob3_A           82 LDQ-DLKKLLDVCEG--GLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR  155 (288)
T ss_dssp             CSE-EHHHHHHTSTT--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---
T ss_pred             cCC-CHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccccccCcccc
Confidence            975 88888765432  488999999999999999999999   999999999999999999999999999987654333


Q ss_pred             CcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccc----------c---CCCCcchhhHHhh
Q 042435          280 NRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLS----------S---SSGPKIMLIDILY  345 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~----------~---~~~~~~~~~~~~~  345 (412)
                      ......||+.|+|||++.+. .++.++|||||||++|||++|+.||.......          .   ...+........+
T Consensus       156 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (288)
T 1ob3_A          156 KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYD  235 (288)
T ss_dssp             ------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCC
T ss_pred             ccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhcccccc
Confidence            34455789999999998764 58999999999999999999999986321100          0   0000000000000


Q ss_pred             hccC----CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 QRLS----PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ~~~~----~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      +...    .+...........+.+++.+||+.||++|||+.|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  281 (288)
T 1ob3_A          236 PNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH  281 (288)
T ss_dssp             TTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             cccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence            0000    00000000112347789999999999999999999864

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=2.1e-40  Score=312.64  Aligned_cols=233  Identities=18%  Similarity=0.228  Sum_probs=179.4

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ++|++.+.||+|+||+||+|... +++.||+|++                       +|+++.....++.+++..++|||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            57999999999999999999874 6899999965                       46777777778888999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++ ++.+.+....  ..+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++......
T Consensus        82 ~~~~-~l~~~~~~~~--~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~  155 (292)
T 3o0g_A           82 FCDQ-DLKKYFDSCN--GDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV  155 (292)
T ss_dssp             CCSE-EHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCSCC
T ss_pred             cCCC-CHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecCCcc
Confidence            9975 5555554322  2589999999999999999999999   99999999999999999999999999998775554


Q ss_pred             CCcccccccccccccccccCcc-cCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhc----------
Q 042435          279 SNRTLQAGTYGYIALELVYTMV-VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQR----------  347 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~-~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~----------  347 (412)
                      .......||+.|+|||++.+.. ++.++|||||||++|||++|..|+......      ......+....          
T Consensus       156 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~------~~~~~~i~~~~~~~~~~~~~~  229 (292)
T 3o0g_A          156 RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDV------DDQLKRIFRLLGTPTEEQWPS  229 (292)
T ss_dssp             SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSH------HHHHHHHHHHHCCCCTTTCTT
T ss_pred             ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCH------HHHHHHHHHHhCCCChhhhhh
Confidence            4455567899999999997765 799999999999999999999886321100      00000000000          


Q ss_pred             --------cC------CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          348 --------LS------PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       348 --------~~------~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                              ..      .............+.+++.+||+.||++|||++|++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  283 (292)
T 3o0g_A          230 MTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH  283 (292)
T ss_dssp             GGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcC
Confidence                    00      00000001112347799999999999999999999875

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=7.2e-40  Score=320.71  Aligned_cols=228  Identities=21%  Similarity=0.314  Sum_probs=183.8

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||+|... +++.||+|.+                        +|+++......+.+.+..++||
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~   94 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV   94 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            57999999999999999999774 5899999954                        5788888888899999999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        95 e~~~gg~L~~~l~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~  168 (384)
T 4fr4_A           95 DLLLGGDLRYHLQQNV---HFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE  168 (384)
T ss_dssp             CCCTTEEHHHHHHTTC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred             ecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeeccCC
Confidence            9999999999987653   589999999999999999999999   9999999999999999999999999999876433


Q ss_pred             CCCcccccccccccccccccC---cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          278 SSNRTLQAGTYGYIALELVYT---MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~---~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                       .......||+.|+|||++..   ..++.++|||||||++|||++|+.||....     ..........+..... ..+.
T Consensus       169 -~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~-----~~~~~~~~~~~~~~~~-~~p~  241 (384)
T 4fr4_A          169 -TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRS-----STSSKEIVHTFETTVV-TYPS  241 (384)
T ss_dssp             -CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCT-----TSCHHHHHHHHHHCCC-CCCT
T ss_pred             -CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCC-----CccHHHHHHHHhhccc-CCCC
Confidence             23345679999999999864   458999999999999999999999996321     1111111121111111 1111


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCC-HHHHHH
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPT-MQRISQ  386 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs-~~evl~  386 (412)
                      ..   ...+.+++.+||+.||++||+ ++++.+
T Consensus       242 ~~---s~~~~~li~~lL~~dP~~R~s~~~~l~~  271 (384)
T 4fr4_A          242 AW---SQEMVSLLKKLLEPNPDQRFSQLSDVQN  271 (384)
T ss_dssp             TS---CHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred             cC---CHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence            21   223788999999999999998 777765

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=5.4e-40  Score=322.26  Aligned_cols=232  Identities=21%  Similarity=0.259  Sum_probs=186.4

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEe
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      .++|++.+.||+|+||.||+|... +|+.||+|.+                     +|+++......+...+..++||||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~  129 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF  129 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence            467999999999999999999774 6899999964                     578888888888899999999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC--CCcEEEeecCCccccCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS--NLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~--~~~~kl~DfGla~~~~~~  277 (412)
                      +++|+|.+++....  ..+++..+..++.|++.||+|||++   +|+||||||+|||++.  ++.+||+|||+++.....
T Consensus       130 ~~gg~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~  204 (387)
T 1kob_A          130 LSGGELFDRIAAED--YKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD  204 (387)
T ss_dssp             CCCCBHHHHTTCTT--CCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTT
T ss_pred             CCCCcHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecCCC
Confidence            99999999887543  2489999999999999999999999   9999999999999974  578999999999876543


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                      . ......||+.|+|||++.+..++.++|||||||++|||++|+.||....       .......+.......+. ....
T Consensus       205 ~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~-------~~~~~~~i~~~~~~~~~-~~~~  275 (387)
T 1kob_A          205 E-IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGED-------DLETLQNVKRCDWEFDE-DAFS  275 (387)
T ss_dssp             S-CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS-------HHHHHHHHHHCCCCCCS-STTT
T ss_pred             c-ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCC-------HHHHHHHHHhCCCCCCc-cccc
Confidence            2 2334579999999999999999999999999999999999999987321       11111222221111110 1111


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .....+.+++.+||+.||++|||+.|++++
T Consensus       276 ~~s~~~~~li~~~L~~dP~~Rpt~~ell~h  305 (387)
T 1kob_A          276 SVSPEAKDFIKNLLQKEPRKRLTVHDALEH  305 (387)
T ss_dssp             TSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             cCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence            112347899999999999999999999986

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=1.3e-40  Score=309.50  Aligned_cols=234  Identities=22%  Similarity=0.295  Sum_probs=188.7

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++|++.+.||+|+||.||+|...+++.||+|.+                    +|+++......+...+..++||||+++
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~   87 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEH   87 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTT
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCC
Confidence            578899999999999999999988999999965                    467777777778888899999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC-CCc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS-SNR  281 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~-~~~  281 (412)
                      ++|.+++.....  .+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|||+++...... ...
T Consensus        88 ~~L~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~  162 (267)
T 3t9t_A           88 GCLSDYLRTQRG--LFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSS  162 (267)
T ss_dssp             CBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHST
T ss_pred             CcHHHHHhhCcc--cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEccccccccccccccccc
Confidence            999999875432  489999999999999999999999   99999999999999999999999999998653321 111


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ....++..|+|||++.+..++.++||||||+++|||++ |+.||....        .....+.+........+...   .
T Consensus       163 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~--------~~~~~~~i~~~~~~~~~~~~---~  231 (267)
T 3t9t_A          163 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS--------NSEVVEDISTGFRLYKPRLA---S  231 (267)
T ss_dssp             TSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--------HHHHHHHHHTTCCCCCCTTS---C
T ss_pred             ccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCC--------HHHHHHHHhcCCcCCCCccC---c
Confidence            23456788999999988889999999999999999999 899986321        11112222222111111111   2


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ..+.+++.+||+.||++|||+.|++++|+++.
T Consensus       232 ~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~  263 (267)
T 3t9t_A          232 THVYQIMNHCWRERPEDRPAFSRLLRQLAEIA  263 (267)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            23788999999999999999999999998875

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=4.9e-40  Score=307.64  Aligned_cols=230  Identities=21%  Similarity=0.342  Sum_probs=164.8

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ..++|++.+.||+|+||.||+|.. .+|+.||+|.+                        +|+++......+...+..++
T Consensus         9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   88 (278)
T 3cok_A            9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYL   88 (278)
T ss_dssp             SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEE
T ss_pred             ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEE
Confidence            346799999999999999999987 57999999964                        57778788888888999999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||||+++++|.+++....  ..+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|||++....
T Consensus        89 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~  163 (278)
T 3cok_A           89 VLEMCHNGEMNRYLKNRV--KPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLK  163 (278)
T ss_dssp             EEECCTTEEHHHHHHTCS--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             EEecCCCCcHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceeecc
Confidence            999999999999987643  2589999999999999999999999   99999999999999999999999999998765


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ..........||+.|+|||.+.+..++.++||||||+++|||++|+.||.....       ..............  +..
T Consensus       164 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-------~~~~~~~~~~~~~~--~~~  234 (278)
T 3cok_A          164 MPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTV-------KNTLNKVVLADYEM--PSF  234 (278)
T ss_dssp             ----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSC-------C-----CCSSCCCC--CTT
T ss_pred             CCCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhH-------HHHHHHHhhcccCC--ccc
Confidence            443333445789999999999988899999999999999999999999873211       01111111111111  111


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .   ...+.+++.+||+.||++|||++|++++
T Consensus       235 ~---~~~~~~li~~~l~~dp~~Rps~~~~l~h  263 (278)
T 3cok_A          235 L---SIEAKDLIHQLLRRNPADRLSLSSVLDH  263 (278)
T ss_dssp             S---CHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             c---CHHHHHHHHHHcccCHhhCCCHHHHhcC
Confidence            1   1237789999999999999999999874

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=1.1e-40  Score=318.60  Aligned_cols=245  Identities=20%  Similarity=0.266  Sum_probs=193.3

Q ss_pred             HHHHHHhhcCcccceeeeecCceEEEEEEeC------CCcEEEEEec----------------------cCCccccceEE
Q 042435          135 YENLIDATEYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKL----------------------HHSETEDSAFV  186 (412)
Q Consensus       135 ~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l----------------------~~~~~~~~~~~  186 (412)
                      .+++....++|++.+.||+|+||.||+|...      +++.||+|.+                      +|+++......
T Consensus        17 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~   96 (322)
T 1p4o_A           17 PDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGV   96 (322)
T ss_dssp             CCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEE
T ss_pred             hhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEE
Confidence            3455566788999999999999999999764      3788999965                      46677777778


Q ss_pred             EecCceEEEEEEeccCCceeeeeccCcc-------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC
Q 042435          187 VYSPQCMFFIYEYMERGSLFCVLRDDDE-------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS  259 (412)
Q Consensus       187 ~~~~~~~~lv~ey~~~gsL~~~l~~~~~-------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~  259 (412)
                      +...+..++||||+++|+|.+++.....       ...+++..++.++.|++.||+|||++   +|+||||||+||+++.
T Consensus        97 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NIli~~  173 (322)
T 1p4o_A           97 VSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAE  173 (322)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECT
T ss_pred             EccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceEEEcC
Confidence            8888899999999999999999875431       13478999999999999999999999   9999999999999999


Q ss_pred             CCcEEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCC
Q 042435          260 NLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGP  336 (412)
Q Consensus       260 ~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~  336 (412)
                      ++.+||+|||+++........  .....+|+.|+|||++.+..++.++||||||+++|||+| |+.||...       . 
T Consensus       174 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~-------~-  245 (322)
T 1p4o_A          174 DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL-------S-  245 (322)
T ss_dssp             TCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-------C-
T ss_pred             CCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccC-------C-
Confidence            999999999999865433221  123456889999999998889999999999999999999 88998632       1 


Q ss_pred             cchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          337 KIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      .......+........+...   ...+.+++.+||+.||++|||+.|++++|++...
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~  299 (322)
T 1p4o_A          246 NEQVLRFVMEGGLLDKPDNC---PDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  299 (322)
T ss_dssp             HHHHHHHHHTTCCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHcCCcCCCCCCC---CHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence            11112222111111111221   2237889999999999999999999999998754

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=2e-40  Score=315.66  Aligned_cols=245  Identities=21%  Similarity=0.282  Sum_probs=192.1

Q ss_pred             HHHHHHhhcCcccceeeeecCceEEEEEEe------CCCcEEEEEec-----------------------cCCccccceE
Q 042435          135 YENLIDATEYFHIRYCIGTGGYDSVYKAEL------PDGKVVALKKL-----------------------HHSETEDSAF  185 (412)
Q Consensus       135 ~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~------~~~~~vAvK~l-----------------------~~~~~~~~~~  185 (412)
                      ..+.....++|++.+.||+|+||.||+|.+      .+++.||||.+                       +|+++.....
T Consensus        19 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~   98 (316)
T 2xir_A           19 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG   98 (316)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             ccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEE
Confidence            344555668899999999999999999974      35789999975                       3566666666


Q ss_pred             EEecC-ceEEEEEEeccCCceeeeeccCccc-------------ccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCC
Q 042435          186 VVYSP-QCMFFIYEYMERGSLFCVLRDDDEA-------------IELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDIS  251 (412)
Q Consensus       186 ~~~~~-~~~~lv~ey~~~gsL~~~l~~~~~~-------------~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlk  251 (412)
                      .+... ...++||||+++|+|.+++......             ..+++..+..++.|++.||+|||++   +|+|||||
T Consensus        99 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dik  175 (316)
T 2xir_A           99 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLA  175 (316)
T ss_dssp             EECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCCSCCS
T ss_pred             EEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---CcccccCc
Confidence            66654 4589999999999999998765421             1278999999999999999999999   99999999


Q ss_pred             CCCEEecCCCcEEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCccccc
Q 042435          252 SNNILLNSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLL  328 (412)
Q Consensus       252 p~NILl~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~  328 (412)
                      |+||+++.++.+||+|||+++........  .....||+.|+|||++.+..++.++||||||+++|||+| |+.||... 
T Consensus       176 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~-  254 (316)
T 2xir_A          176 ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV-  254 (316)
T ss_dssp             GGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC-
T ss_pred             cceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCccc-
Confidence            99999999999999999999866443322  234567889999999998899999999999999999998 99998632 


Q ss_pred             ccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          329 SLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                            .........+........+...   ...+.+++.+||+.||++|||+.|++++|+++.
T Consensus       255 ------~~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~  309 (316)
T 2xir_A          255 ------KIDEEFCRRLKEGTRMRAPDYT---TPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL  309 (316)
T ss_dssp             ------CCSHHHHHHHHHTCCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ------chhHHHHHHhccCccCCCCCCC---CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence                  1112222333322222222221   223788999999999999999999999998765

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=2.1e-40  Score=312.33  Aligned_cols=237  Identities=24%  Similarity=0.379  Sum_probs=174.7

Q ss_pred             hcCcccceeeeecCceEEEEEEeCCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .++|++.+.||+|+||.||+|...+  .||+|.+                       +|+++..... +...+..++|||
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~-~~~~~~~~lv~e   99 (289)
T 3og7_A           23 DGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMG-YSTAPQLAIVTQ   99 (289)
T ss_dssp             TTSCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEE-EECSSSCEEEEE
T ss_pred             ccceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEe-eccCCccEEEEE
Confidence            4679999999999999999998743  5999965                       3555555554 345667899999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++++|.+++....  ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......
T Consensus       100 ~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  174 (289)
T 3og7_A          100 WCEGSSLYHHLHASE--TKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWS  174 (289)
T ss_dssp             CCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC---------
T ss_pred             ecCCCcHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceecccccccc
Confidence            999999999886543  2589999999999999999999999   99999999999999999999999999997654321


Q ss_pred             --CCccccccccccccccccc---CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhc-cCCcc
Q 042435          279 --SNRTLQAGTYGYIALELVY---TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQR-LSPPI  352 (412)
Q Consensus       279 --~~~~~~~gt~~y~aPE~~~---~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  352 (412)
                        .......||+.|+|||.+.   +..++.++||||||+++|||++|+.||...       .......+.+... ..+..
T Consensus       175 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~-------~~~~~~~~~~~~~~~~~~~  247 (289)
T 3og7_A          175 GSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNI-------NNRDQIIEMVGRGSLSPDL  247 (289)
T ss_dssp             ---------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSC-------CCHHHHHHHHHHTSCCCCT
T ss_pred             ccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCcccc-------chHHHHHHHhcccccCcch
Confidence              2223457899999999986   567888999999999999999999998732       1112222222222 11111


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      ..........+.+++.+||+.||++|||+.|+++.|+++..
T Consensus       248 ~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          248 SKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR  288 (289)
T ss_dssp             TSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             hhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence            11111222348899999999999999999999999998764

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=4.1e-40  Score=344.67  Aligned_cols=229  Identities=21%  Similarity=0.299  Sum_probs=186.7

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEecc-------------------------CCccccceEEEecCceEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-------------------------HSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-------------------------~~~~~~~~~~~~~~~~~~  194 (412)
                      ..++|++.++||+|+||.||+|... +++.||||.++                         |+++......+.+.+..|
T Consensus       339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~  418 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY  418 (674)
T ss_dssp             -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred             cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence            3467999999999999999999874 68899999753                         455555666677888999


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      +||||+++|+|.+++....   .+++..+..++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+++..
T Consensus       419 lV~E~~~gg~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~~  492 (674)
T 3pfq_A          419 FVMEYVNGGDLMYHIQQVG---RFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEN  492 (674)
T ss_dssp             EEEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEEC
T ss_pred             EEEeCcCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeecc
Confidence            9999999999999987643   589999999999999999999999   9999999999999999999999999999865


Q ss_pred             CCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          275 DVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       275 ~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      ...........||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+  .
T Consensus       493 ~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~-------~~~~~~~~i~~~~~~~p--~  563 (674)
T 3pfq_A          493 IWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE-------DEDELFQSIMEHNVAYP--K  563 (674)
T ss_dssp             CCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHSSCCCCC--T
T ss_pred             ccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCC-------CHHHHHHHHHhCCCCCC--c
Confidence            44444455678999999999999999999999999999999999999999732       11222333333333222  1


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCH-----HHHHHH
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTM-----QRISQE  387 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~-----~evl~~  387 (412)
                      ..   ...+.+++.+||+.||++||++     +||.++
T Consensus       564 ~~---s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h  598 (674)
T 3pfq_A          564 SM---SKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH  598 (674)
T ss_dssp             TS---CHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSS
T ss_pred             cC---CHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcC
Confidence            22   2237889999999999999997     777653

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=4.4e-40  Score=308.09  Aligned_cols=236  Identities=24%  Similarity=0.359  Sum_probs=187.1

Q ss_pred             hcCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEecc
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      .++|++.+.||+|+||.||+|...+++.||+|.+                    +|+++......+. .+..++||||++
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~   90 (279)
T 1qpc_A           12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYME   90 (279)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECCT
T ss_pred             HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEecCC
Confidence            4679999999999999999999988889999965                    4566666555544 556899999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC-C
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS-N  280 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~-~  280 (412)
                      +++|.+++..... ..+++..+..++.|++.||+|||++   +++||||||+||++++++.+||+|||+++....... .
T Consensus        91 ~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  166 (279)
T 1qpc_A           91 NGSLVDFLKTPSG-IKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTA  166 (279)
T ss_dssp             TCBHHHHTTSHHH-HTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEEC
T ss_pred             CCCHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccccCccccc
Confidence            9999999875432 2589999999999999999999999   999999999999999999999999999987654321 1


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      .....++..|+|||.+.+..++.++||||||+++|||++ |+.||....        .......+........+...   
T Consensus       167 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~---  235 (279)
T 1qpc_A          167 REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMT--------NPEVIQNLERGYRMVRPDNC---  235 (279)
T ss_dssp             CTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCC--------HHHHHHHHHTTCCCCCCTTC---
T ss_pred             ccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccC--------HHHHHHHHhcccCCCCcccc---
Confidence            233456789999999988889999999999999999999 899986321        11122222222222111221   


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      ...+.+++.+||+.||++|||+.++++.|+++..
T Consensus       236 ~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~  269 (279)
T 1qpc_A          236 PEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT  269 (279)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHH
Confidence            2247889999999999999999999999987643

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.2e-40  Score=320.03  Aligned_cols=230  Identities=19%  Similarity=0.272  Sum_probs=177.7

Q ss_pred             hcCcccceeeeecCceEEEEEEeCCCcEEEEEecc-----------------------C--CccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLH-----------------------H--SETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~-----------------------~--~~~~~~~~~~~~~~~~~lv  196 (412)
                      .+.|++.+.||+|+||.||++...+++.||||+++                       |  +++......+...+..++|
T Consensus         8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv   87 (343)
T 3dbq_A            8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV   87 (343)
T ss_dssp             SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence            45699999999999999999999899999999652                       3  6677777778888999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      ||| .+|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++ ++.+||+|||+++....
T Consensus        88 ~e~-~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~  159 (343)
T 3dbq_A           88 MEC-GNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQP  159 (343)
T ss_dssp             ECC-CSEEHHHHHHHSC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC--
T ss_pred             EeC-CCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecccccccCc
Confidence            995 5789999987654   589999999999999999999999   999999999999997 57899999999987654


Q ss_pred             CCC--CcccccccccccccccccC-----------cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHH
Q 042435          277 DSS--NRTLQAGTYGYIALELVYT-----------MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDI  343 (412)
Q Consensus       277 ~~~--~~~~~~gt~~y~aPE~~~~-----------~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~  343 (412)
                      ...  ......||+.|+|||++.+           ..++.++|||||||++|||++|+.||....      .........
T Consensus       160 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~------~~~~~~~~~  233 (343)
T 3dbq_A          160 DTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII------NQISKLHAI  233 (343)
T ss_dssp             ----------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCC------SHHHHHHHH
T ss_pred             ccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhh------hHHHHHHHH
Confidence            332  2234579999999999864           678899999999999999999999987321      111112222


Q ss_pred             hhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          344 LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      .+.......+....   ..+.+++.+||+.||++|||+.|++++-
T Consensus       234 ~~~~~~~~~~~~~~---~~l~~li~~~L~~dp~~Rpt~~e~l~hp  275 (343)
T 3dbq_A          234 IDPNHEIEFPDIPE---KDLQDVLKCCLKRDPKQRISIPELLAHP  275 (343)
T ss_dssp             HCTTSCCCCCCCSC---HHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred             hcCCcccCCcccCC---HHHHHHHHHHcCCChhHCCCHHHHHhCc
Confidence            32222222212111   2377899999999999999999998764

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=8.8e-41  Score=314.17  Aligned_cols=239  Identities=23%  Similarity=0.305  Sum_probs=194.3

Q ss_pred             HHhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec--------------------cCCccccceEEEecCceEEEEE
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ....++|++.+.||+|+||.||+|... +++.||+|.+                    +|+++.....++...+..++||
T Consensus         9 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   88 (288)
T 3kfa_A            9 EMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT   88 (288)
T ss_dssp             BCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEE
T ss_pred             cccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEE
Confidence            345678999999999999999999875 4889999964                    5777777888888889999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++..... ..+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        89 e~~~~~~L~~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~  164 (288)
T 3kfa_A           89 EFMTYGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD  164 (288)
T ss_dssp             ECCTTEEHHHHHHHCCT-TTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSS
T ss_pred             EcCCCCcHHHHHHhccc-CCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccceeccCC
Confidence            99999999999875432 2589999999999999999999999   9999999999999999999999999999876543


Q ss_pred             CCC-cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          278 SSN-RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       278 ~~~-~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ... .....+|+.|+|||.+.+..++.++||||||+++|||++ |..||...        ......+.+........+..
T Consensus       165 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~--------~~~~~~~~~~~~~~~~~~~~  236 (288)
T 3kfa_A          165 TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI--------DLSQVYELLEKDYRMERPEG  236 (288)
T ss_dssp             SSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--------CGGGHHHHHHTTCCCCCCTT
T ss_pred             ccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--------CHHHHHHHHhccCCCCCCCC
Confidence            322 233457889999999998899999999999999999999 99998632        11222333333332222222


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ..   ..+.+++.+||+.||++|||+.|+++.|+.+.
T Consensus       237 ~~---~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~  270 (288)
T 3kfa_A          237 CP---EKVYELMRACWQWNPSDRPSFAEIHQAFETMF  270 (288)
T ss_dssp             CC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CC---HHHHHHHHHHhCCChhhCcCHHHHHHHHHHHH
Confidence            22   24789999999999999999999999998764

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=5.7e-40  Score=316.77  Aligned_cols=240  Identities=25%  Similarity=0.273  Sum_probs=186.1

Q ss_pred             HHHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec--------------------------cCCccccceEEEec
Q 042435          137 NLIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL--------------------------HHSETEDSAFVVYS  189 (412)
Q Consensus       137 ~l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l--------------------------~~~~~~~~~~~~~~  189 (412)
                      ++.+..++|++.+.||+|+||.||+|.. .+++.||+|.+                          +|+++.....++.+
T Consensus        20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~   99 (345)
T 3hko_A           20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED   99 (345)
T ss_dssp             CHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             hhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc
Confidence            4567788899999999999999999977 56889999954                          57888888888999


Q ss_pred             CceEEEEEEeccCCceeeeeccCc-------------------------------------ccccCCHHHHHHHHHHHHH
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDD-------------------------------------EAIELNWTRRMNIVKSVAH  232 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~-------------------------------------~~~~l~~~~~~~i~~~ia~  232 (412)
                      .+..++||||+++|+|.+++....                                     ....+++..+..++.|++.
T Consensus       100 ~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~  179 (345)
T 3hko_A          100 EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFS  179 (345)
T ss_dssp             SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence            999999999999999998885210                                     0112456778889999999


Q ss_pred             HHHHHHhCCCCCcEEeCCCCCCEEecCCC--cEEEeecCCccccCCCCC----CcccccccccccccccccC--cccCcc
Q 042435          233 ALSYLHHDCTPSIVHRDISSNNILLNSNL--EAFVADFGTVRLLDVDSS----NRTLQAGTYGYIALELVYT--MVVTEK  304 (412)
Q Consensus       233 gL~~LH~~~~~~ivHrDlkp~NILl~~~~--~~kl~DfGla~~~~~~~~----~~~~~~gt~~y~aPE~~~~--~~~s~k  304 (412)
                      ||+|||+.   +|+||||||+||+++.++  .+||+|||+++.......    ......||+.|+|||++.+  ..++.+
T Consensus       180 ~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~  256 (345)
T 3hko_A          180 ALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPK  256 (345)
T ss_dssp             HHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTH
T ss_pred             HHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcH
Confidence            99999999   999999999999998766  899999999986543221    2245579999999999865  678999


Q ss_pred             cccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHH
Q 042435          305 CVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI  384 (412)
Q Consensus       305 sDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev  384 (412)
                      +||||||+++|||++|+.||...       ........+.......+. .........+.+++.+||+.||++|||+.|+
T Consensus       257 ~DiwslG~il~el~~g~~pf~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~  328 (345)
T 3hko_A          257 CDAWSAGVLLHLLLMGAVPFPGV-------NDADTISQVLNKKLCFEN-PNYNVLSPLARDLLSNLLNRNVDERFDAMRA  328 (345)
T ss_dssp             HHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHCCCCTTS-GGGGGSCHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCC-------ChHHHHHHHHhcccccCC-cccccCCHHHHHHHHHHcCCChhHCCCHHHH
Confidence            99999999999999999998632       111222333333332221 1111122347899999999999999999999


Q ss_pred             HHH
Q 042435          385 SQE  387 (412)
Q Consensus       385 l~~  387 (412)
                      +++
T Consensus       329 l~h  331 (345)
T 3hko_A          329 LQH  331 (345)
T ss_dssp             HHS
T ss_pred             hcC
Confidence            885

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=3.2e-40  Score=318.00  Aligned_cols=244  Identities=24%  Similarity=0.338  Sum_probs=189.8

Q ss_pred             HHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecCc----eEE
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSPQ----CMF  194 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~----~~~  194 (412)
                      ....++|++.+.||+|+||.||+|.. +|+.||||.+                    +|+++......+...+    ..+
T Consensus        38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~  116 (342)
T 1b6c_B           38 RTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW  116 (342)
T ss_dssp             HHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEE
T ss_pred             ccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCchhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeE
Confidence            34457899999999999999999988 5899999963                    5777777777776665    789


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHH--------hCCCCCcEEeCCCCCCEEecCCCcEEEe
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH--------HDCTPSIVHRDISSNNILLNSNLEAFVA  266 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH--------~~~~~~ivHrDlkp~NILl~~~~~~kl~  266 (412)
                      +||||+++|+|.+++...    .+++..++.++.|++.||+|||        +.   +|+||||||+||+++.++.+||+
T Consensus       117 lv~e~~~~g~L~~~l~~~----~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~~~~kL~  189 (342)
T 1b6c_B          117 LVSDYHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCIA  189 (342)
T ss_dssp             EEECCCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTTSCEEEC
T ss_pred             EEEeecCCCcHHHHHhcc----CccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCCCCEEEE
Confidence            999999999999999654    4899999999999999999999        66   99999999999999999999999


Q ss_pred             ecCCccccCCCCCC----cccccccccccccccccCc------ccCcccccHHHHHHHHHHHhC----------CCCccc
Q 042435          267 DFGTVRLLDVDSSN----RTLQAGTYGYIALELVYTM------VVTEKCVIYSFGVVALEVLMG----------THPGEL  326 (412)
Q Consensus       267 DfGla~~~~~~~~~----~~~~~gt~~y~aPE~~~~~------~~s~ksDv~S~Gvil~elltg----------~~P~~~  326 (412)
                      |||+++........    .....||+.|+|||++.+.      .++.++||||||+++|||+||          +.||..
T Consensus       190 Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~  269 (342)
T 1b6c_B          190 DLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYD  269 (342)
T ss_dssp             CCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTT
T ss_pred             ECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccc
Confidence            99999876543321    2345789999999998765      344789999999999999999          667652


Q ss_pred             ccccccCCCCcchhhHHh-hhccCCccchh--hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          327 LLSLSSSSGPKIMLIDIL-YQRLSPPINQK--IIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      ...   .......+...+ .....+..+..  .......+.+++.+||+.||++|||+.|++++|+++.+
T Consensus       270 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~  336 (342)
T 1b6c_B          270 LVP---SDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ  336 (342)
T ss_dssp             TSC---SSCCHHHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cCc---CcccHHHHHHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHH
Confidence            210   000111112222 22222222221  12334458899999999999999999999999998764

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=1e-39  Score=318.17  Aligned_cols=238  Identities=24%  Similarity=0.328  Sum_probs=188.7

Q ss_pred             HHHHHHhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------------cCCccccc
Q 042435          135 YENLIDATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------------HHSETEDS  183 (412)
Q Consensus       135 ~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------------~~~~~~~~  183 (412)
                      +.......++|++.+.||+|+||.||+|... +|+.||||.+                              +|+++...
T Consensus        86 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~  165 (365)
T 2y7j_A           86 WAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITL  165 (365)
T ss_dssp             HHHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCE
T ss_pred             chhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence            3445566788999999999999999999885 7999999964                              46677777


Q ss_pred             eEEEecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcE
Q 042435          184 AFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEA  263 (412)
Q Consensus       184 ~~~~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~  263 (412)
                      ...+......++||||+++|+|.+++....   .+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+
T Consensus       166 ~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~---~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~i  239 (365)
T 2y7j_A          166 IDSYESSSFMFLVFDLMRKGELFDYLTEKV---ALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQI  239 (365)
T ss_dssp             EEEEEBSSEEEEEECCCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCE
T ss_pred             EEEEeeCCEEEEEEEeCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCE
Confidence            777888899999999999999999887543   589999999999999999999998   99999999999999999999


Q ss_pred             EEeecCCccccCCCCCCcccccccccccccccccC------cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCc
Q 042435          264 FVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT------MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPK  337 (412)
Q Consensus       264 kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~  337 (412)
                      ||+|||++....... ......||+.|+|||++.+      ..++.++|||||||++|||++|+.||...       ...
T Consensus       240 kl~DfG~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~-------~~~  311 (365)
T 2y7j_A          240 RLSDFGFSCHLEPGE-KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHR-------RQI  311 (365)
T ss_dssp             EECCCTTCEECCTTC-CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCS-------SHH
T ss_pred             EEEecCcccccCCCc-ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCC-------CHH
Confidence            999999998765432 2334579999999999863      35888999999999999999999998631       111


Q ss_pred             chhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          338 IMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .....+........ ..........+.+++.+||+.||++|||+.|++++
T Consensus       312 ~~~~~i~~~~~~~~-~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h  360 (365)
T 2y7j_A          312 LMLRMIMEGQYQFS-SPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQH  360 (365)
T ss_dssp             HHHHHHHHTCCCCC-HHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHHHHHhCCCCCC-CcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            11112222222111 11111122348899999999999999999999874

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=2.9e-40  Score=321.51  Aligned_cols=233  Identities=21%  Similarity=0.274  Sum_probs=175.9

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEec
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      .++|++.+.||+|+||.||++... +++.||||.+                    +|+++.....++.+.+..++||||+
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   98 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYA   98 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeC
Confidence            467999999999999999999875 7999999964                    5788888888889999999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCc--EEEeecCCccccCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLE--AFVADFGTVRLLDVDS  278 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~--~kl~DfGla~~~~~~~  278 (412)
                      ++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.  +||+|||+++......
T Consensus        99 ~~~~L~~~l~~~~---~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~  172 (361)
T 3uc3_A           99 SGGELYERICNAG---RFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHS  172 (361)
T ss_dssp             CSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC-------
T ss_pred             CCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCccccccccC
Confidence            9999999886543   589999999999999999999998   9999999999999987665  9999999997533222


Q ss_pred             CCcccccccccccccccccCcccCcc-cccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEK-CVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~k-sDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                       ......||+.|+|||++.+..++.+ +|||||||++|||++|+.||......   .........+.......+....  
T Consensus       173 -~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--  246 (361)
T 3uc3_A          173 -QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEP---RDYRKTIQRILSVKYSIPDDIR--  246 (361)
T ss_dssp             ---------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----C---CCHHHHHHHHHTTCCCCCTTSC--
T ss_pred             -CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccH---HHHHHHHHHHhcCCCCCCCcCC--
Confidence             2234579999999999988877655 89999999999999999999732110   0000111122222222111111  


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                       ....+.+++.+||+.||++|||+.|++++
T Consensus       247 -~s~~~~~li~~~L~~dP~~Rps~~ell~h  275 (361)
T 3uc3_A          247 -ISPECCHLISRIFVADPATRISIPEIKTH  275 (361)
T ss_dssp             -CCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             -CCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence             12237889999999999999999999986

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.2e-40  Score=316.78  Aligned_cols=238  Identities=27%  Similarity=0.374  Sum_probs=182.7

Q ss_pred             cCcccceeeeecCceEEEEEEeCC-----CcEEEEEec----------------------cCCccccceEEEecCceEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPD-----GKVVALKKL----------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~-----~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ++|.+.+.||+|+||.||+|....     +..||+|.+                      +|+++......+...+..++
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  123 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI  123 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence            457778999999999999997642     346999965                      46777777778888899999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||||+++|+|.+++....  ..+++..++.++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++...
T Consensus       124 v~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~  198 (333)
T 1mqb_A          124 ITEYMENGALDKFLREKD--GEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLE  198 (333)
T ss_dssp             EEECCTTEEHHHHHHHTT--TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC-----
T ss_pred             EEeCCCCCcHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchhhc
Confidence            999999999999987543  2589999999999999999999999   99999999999999999999999999998764


Q ss_pred             CCCCC---cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCc
Q 042435          276 VDSSN---RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPP  351 (412)
Q Consensus       276 ~~~~~---~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (412)
                      .....   .....+|+.|+|||.+.+..++.++||||||+++|||++ |+.||....        .......+......+
T Consensus       199 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~--------~~~~~~~~~~~~~~~  270 (333)
T 1mqb_A          199 DDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELS--------NHEVMKAINDGFRLP  270 (333)
T ss_dssp             ------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--------HHHHHHHHHTTCCCC
T ss_pred             cccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCC--------HHHHHHHHHCCCcCC
Confidence            43221   122346788999999998899999999999999999999 999986321        111222222222222


Q ss_pred             cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCC
Q 042435          352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKK  396 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  396 (412)
                      .+...   ...+.+++.+||+.||++||++.|+++.|+++.....
T Consensus       271 ~~~~~---~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~  312 (333)
T 1mqb_A          271 TPMDC---PSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPD  312 (333)
T ss_dssp             CCTTC---BHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGG
T ss_pred             CcccC---CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcch
Confidence            22222   2237889999999999999999999999988765443

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=2.2e-40  Score=313.60  Aligned_cols=241  Identities=20%  Similarity=0.300  Sum_probs=186.1

Q ss_pred             cCcccceeeeecCceEEEEEEe-----CCCcEEEEEec----------------------cCCccccceEEEecC--ceE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-----PDGKVVALKKL----------------------HHSETEDSAFVVYSP--QCM  193 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-----~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~--~~~  193 (412)
                      +.|++.+.||+|+||.||+|.+     .+++.||+|.+                      +|+++.....++...  +..
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            4588899999999999999984     46899999975                      456666666666655  668


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ++||||+++|+|.+++....  ..+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++.
T Consensus       101 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~  175 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKNK--NKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKA  175 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             EEEEEeCCCCcHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECccccccc
Confidence            99999999999999985443  2489999999999999999999999   999999999999999999999999999987


Q ss_pred             cCCCCC---CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccccc----ccCCCCcc---hhhHH
Q 042435          274 LDVDSS---NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSL----SSSSGPKI---MLIDI  343 (412)
Q Consensus       274 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~----~~~~~~~~---~~~~~  343 (412)
                      ......   ......||..|+|||.+.+..++.++||||||+++|||+||..|+......    ........   .....
T Consensus       176 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (302)
T 4e5w_A          176 IETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNT  255 (302)
T ss_dssp             CCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHH
T ss_pred             ccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHH
Confidence            654432   123456888899999999889999999999999999999999987532110    00001111   11112


Q ss_pred             hhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          344 LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      .......+.+...   ...+.+++.+||+.||++|||+.|+++.|+++
T Consensus       256 ~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  300 (302)
T 4e5w_A          256 LKEGKRLPCPPNC---PDEVYQLMRKCWEFQPSNRTSFQNLIEGFEAL  300 (302)
T ss_dssp             HHTTCCCCCCTTC---CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             HhccCCCCCCCCC---CHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            2222222222222   23488999999999999999999999999875

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=4.3e-40  Score=323.55  Aligned_cols=229  Identities=18%  Similarity=0.270  Sum_probs=178.5

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEecc-------------------------CCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLH-------------------------HSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~-------------------------~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||+|...+++.||||.++                         |+++.....++...+..++||
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~  135 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM  135 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence            4599999999999999999998889999999652                         366777777788888999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      | +.+++|.+++....   .+++..+..++.||+.||+|||++   +|+||||||+|||++ ++.+||+|||+++.....
T Consensus       136 E-~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~  207 (390)
T 2zmd_A          136 E-CGNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD  207 (390)
T ss_dssp             E-CCSEEHHHHHHHCS---SCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC---
T ss_pred             e-cCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCccccccCC
Confidence            9 56889999987654   588999999999999999999998   999999999999996 578999999999876543


Q ss_pred             CC--CcccccccccccccccccC-----------cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHh
Q 042435          278 SS--NRTLQAGTYGYIALELVYT-----------MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDIL  344 (412)
Q Consensus       278 ~~--~~~~~~gt~~y~aPE~~~~-----------~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~  344 (412)
                      ..  ......||+.|+|||++.+           ..++.++|||||||++|||++|+.||....      .....+..++
T Consensus       208 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~------~~~~~~~~~~  281 (390)
T 2zmd_A          208 TTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII------NQISKLHAII  281 (390)
T ss_dssp             ------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCC------CHHHHHHHHH
T ss_pred             CccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhh------HHHHHHHHHh
Confidence            22  1234579999999999865           368899999999999999999999986321      1111223333


Q ss_pred             hhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          345 YQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      ........+...   ...+.+++.+||+.||++|||+.|++++-
T Consensus       282 ~~~~~~~~~~~~---~~~~~~li~~~L~~dP~~Rps~~ell~hp  322 (390)
T 2zmd_A          282 DPNHEIEFPDIP---EKDLQDVLKCCLKRDPKQRISIPELLAHP  322 (390)
T ss_dssp             CTTSCCCCCCCS---CHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred             CccccCCCCccc---hHHHHHHHHHHcccChhhCCCHHHHhhCc
Confidence            332222221111   12378899999999999999999998763

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=4.7e-40  Score=315.23  Aligned_cols=239  Identities=18%  Similarity=0.219  Sum_probs=175.2

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ++|.+.+.||+|+||.||+|... +++.||+|.+                      +|+++.....++...+..++||||
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   81 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence            57999999999999999999875 7899999964                      466677777778888999999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      ++ |+|.+++.....  .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......
T Consensus        82 ~~-~~l~~~~~~~~~--~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~  155 (324)
T 3mtl_A           82 LD-KDLKQYLDDCGN--IINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPTK  155 (324)
T ss_dssp             CS-EEHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC-----
T ss_pred             cc-cCHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccCCcc
Confidence            97 588888765432  489999999999999999999999   999999999999999999999999999986654444


Q ss_pred             CcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccc-------------cCCCCcchh-hHHh
Q 042435          280 NRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS-------------SSSGPKIML-IDIL  344 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~-------------~~~~~~~~~-~~~~  344 (412)
                      ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.......             ....+.... ....
T Consensus       156 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  235 (324)
T 3mtl_A          156 TYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFK  235 (324)
T ss_dssp             -------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHH
T ss_pred             ccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhc
Confidence            4445578999999999876 568999999999999999999999996321000             000000000 0000


Q ss_pred             hhccCCcc----chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          345 YQRLSPPI----NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       345 ~~~~~~~~----~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ........    ..........+.+++.+||+.||++|||++|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  282 (324)
T 3mtl_A          236 TYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKH  282 (324)
T ss_dssp             HTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             ccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence            00000000    00000112347899999999999999999999884

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=1.4e-39  Score=322.84  Aligned_cols=233  Identities=22%  Similarity=0.252  Sum_probs=175.4

Q ss_pred             HhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------------cCCccccceEEEec
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------------HHSETEDSAFVVYS  189 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------------~~~~~~~~~~~~~~  189 (412)
                      ...++|.+.+.||+|+||.||+|.. .+++.||||.+                             +|+++.....++ .
T Consensus       132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~-~  210 (419)
T 3i6u_A          132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFF-D  210 (419)
T ss_dssp             HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEE-E
T ss_pred             hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEE-e
Confidence            4567899999999999999999976 46899999964                             355666555554 4


Q ss_pred             CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC---CcEEEe
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN---LEAFVA  266 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~---~~~kl~  266 (412)
                      .+..++||||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.+   ..+||+
T Consensus       211 ~~~~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl~  284 (419)
T 3i6u_A          211 AEDYYIVLELMEGGELFDKVVGNK---RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKIT  284 (419)
T ss_dssp             SSEEEEEEECCTTCBGGGGTSSSC---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEEC
T ss_pred             cCceEEEEEcCCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEEe
Confidence            556899999999999999887654   589999999999999999999999   99999999999999654   459999


Q ss_pred             ecCCccccCCCCCCcccccccccccccccccC---cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHH
Q 042435          267 DFGTVRLLDVDSSNRTLQAGTYGYIALELVYT---MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDI  343 (412)
Q Consensus       267 DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~  343 (412)
                      |||+++...... ......||+.|+|||++.+   ..++.++|||||||++|||+||+.||...       .......+.
T Consensus       285 DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~-------~~~~~~~~~  356 (419)
T 3i6u_A          285 DFGHSKILGETS-LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH-------RTQVSLKDQ  356 (419)
T ss_dssp             CSSTTTSCC------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCC-------SSSCCHHHH
T ss_pred             ecccceecCCCc-cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCC-------cchHHHHHH
Confidence            999998764332 2234579999999999853   56888999999999999999999998732       111122222


Q ss_pred             hhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          344 LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      +........+.........+.+++.+||+.||++|||+.|++++
T Consensus       357 i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  400 (419)
T 3i6u_A          357 ITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH  400 (419)
T ss_dssp             HHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HhcCCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence            22222111111111223458899999999999999999999975

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.5e-40  Score=316.58  Aligned_cols=235  Identities=23%  Similarity=0.374  Sum_probs=180.3

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCc----EEEEEec----------------------cCCccccceEEEecCceEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGK----VVALKKL----------------------HHSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~----~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~  194 (412)
                      .++|++.+.||+|+||.||+|.+. +++    .||+|.+                      +|+++.....++... ..+
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~   92 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQ   92 (327)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESS-SEE
T ss_pred             HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecC-Cce
Confidence            367999999999999999999863 444    3577754                      466777766666654 488


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      +|+||+++|+|.+++.....  .+++..++.++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++..
T Consensus        93 ~v~~~~~~g~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~  167 (327)
T 3lzb_A           93 LITQLMPFGCLLDYVREHKD--NIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLL  167 (327)
T ss_dssp             EEECCCSSCBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC----
T ss_pred             EEEEecCCCcHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcceeEc
Confidence            99999999999999876432  489999999999999999999999   9999999999999999999999999999876


Q ss_pred             CCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCc
Q 042435          275 DVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPP  351 (412)
Q Consensus       275 ~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (412)
                      ......  .....+|+.|+|||.+.+..++.++||||||+++|||++ |+.||...        ........+......+
T Consensus       168 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~--------~~~~~~~~~~~~~~~~  239 (327)
T 3lzb_A          168 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI--------PASEISSILEKGERLP  239 (327)
T ss_dssp             ------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC--------CGGGHHHHHHTTCCCC
T ss_pred             cCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCC--------CHHHHHHHHHcCCCCC
Confidence            443222  233456889999999999999999999999999999999 99998732        1222333333333222


Q ss_pred             cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      .+....   ..+.+++.+||+.||++|||+.|+++.|+++..
T Consensus       240 ~~~~~~---~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~  278 (327)
T 3lzb_A          240 QPPICT---IDVYMIMRKCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             CCTTBC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHT
T ss_pred             CCccCC---HHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHh
Confidence            222222   237889999999999999999999999988764

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=9.2e-40  Score=306.57  Aligned_cols=232  Identities=19%  Similarity=0.260  Sum_probs=185.2

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEecCceEEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ..++|++.+.||+|+||.||+|... +++.||+|.+                       +|+++......+...+..++|
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   83 (284)
T 3kk8_A            4 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV   83 (284)
T ss_dssp             TTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEE
Confidence            3578999999999999999999774 6899999964                       577777778888889999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCc---EEEeecCCccc
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLE---AFVADFGTVRL  273 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~---~kl~DfGla~~  273 (412)
                      |||+++|+|.+.+....   .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.   +||+|||++..
T Consensus        84 ~e~~~~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~  157 (284)
T 3kk8_A           84 FDLVTGGELFEDIVARE---FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIE  157 (284)
T ss_dssp             ECCCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEE
T ss_pred             EecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEE
Confidence            99999999988776543   589999999999999999999999   9999999999999976655   99999999976


Q ss_pred             cCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccc
Q 042435          274 LDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN  353 (412)
Q Consensus       274 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (412)
                      ..... ......||+.|+|||.+.+..++.++||||||+++|||++|+.||...       ........+.......+. 
T Consensus       158 ~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~-------~~~~~~~~~~~~~~~~~~-  228 (284)
T 3kk8_A          158 VNDSE-AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE-------DQHRLYAQIKAGAYDYPS-  228 (284)
T ss_dssp             CCSSC-BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHTCCCCCT-
T ss_pred             cccCc-cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCC-------chhHHHHHHHhccccCCc-
Confidence            54332 223457899999999999999999999999999999999999998632       111111222222221111 


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .........+.+++.+||+.||++|||+.|++++
T Consensus       229 ~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  262 (284)
T 3kk8_A          229 PEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV  262 (284)
T ss_dssp             TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             hhhcccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence            1111122347899999999999999999999885

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=1.7e-40  Score=316.32  Aligned_cols=236  Identities=22%  Similarity=0.313  Sum_probs=173.3

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCc----e
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQ----C  192 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~----~  192 (412)
                      .++|++.+.||+|+||.||+|.. .+++.||||.+                        +|+++......+....    .
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            46799999999999999999986 67899999975                        3555555555444332    3


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .++||||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++
T Consensus        91 ~~lv~e~~~g~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~  164 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIVHTEG---PMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIAR  164 (311)
T ss_dssp             EEEEEECCCEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC-
T ss_pred             cEEEEecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCcc
Confidence            499999999999999987543   589999999999999999999999   99999999999999999999999999998


Q ss_pred             ccCCCCC---CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          273 LLDVDSS---NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       273 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      .......   ......||+.|+|||++.+..++.++||||||+++|||+||+.||...       ...............
T Consensus       165 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~-------~~~~~~~~~~~~~~~  237 (311)
T 3ork_A          165 AIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD-------SPVSVAYQHVREDPI  237 (311)
T ss_dssp             -----------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS-------SHHHHHHHHHHCCCC
T ss_pred             cccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC-------ChHHHHHHHhcCCCC
Confidence            6644322   123356899999999999999999999999999999999999998732       111111222222211


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHH-HHHHhcC
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI-SQELEGK  391 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev-l~~L~~~  391 (412)
                      ++ ..........+.+++.+||+.||++||++.++ ...+...
T Consensus       238 ~~-~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~  279 (311)
T 3ork_A          238 PP-SARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV  279 (311)
T ss_dssp             CH-HHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred             Cc-ccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence            11 01111122347889999999999999965554 4555443

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=4.1e-40  Score=315.77  Aligned_cols=246  Identities=22%  Similarity=0.317  Sum_probs=188.1

Q ss_pred             cCcccceeeeecCceEEEEEEe-----CCCcEEEEEec---------------------cCCccccceEEEe--cCceEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-----PDGKVVALKKL---------------------HHSETEDSAFVVY--SPQCMF  194 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-----~~~~~vAvK~l---------------------~~~~~~~~~~~~~--~~~~~~  194 (412)
                      ++|++.+.||+|+||.||+|.+     .+++.||||++                     +|+++.....++.  .....+
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~  102 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR  102 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence            5789999999999999999984     46889999975                     4566666666555  456789


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      +||||+++|+|.+++.....  .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus       103 lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~  177 (327)
T 3lxl_A          103 LVMEYLPSGCLRDFLQRHRA--RLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLAKLL  177 (327)
T ss_dssp             EEEECCTTCBHHHHHHHHGG--GCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGCEEC
T ss_pred             EEEeecCCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEcccccceec
Confidence            99999999999999875432  489999999999999999999998   9999999999999999999999999999876


Q ss_pred             CCCCCC---cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccccc----ccCCCCc---chhhHHh
Q 042435          275 DVDSSN---RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSL----SSSSGPK---IMLIDIL  344 (412)
Q Consensus       275 ~~~~~~---~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~----~~~~~~~---~~~~~~~  344 (412)
                      ......   .....||+.|+|||++.+..++.++||||||+++|||++|+.||......    .......   ....+..
T Consensus       178 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (327)
T 3lxl_A          178 PLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELL  257 (327)
T ss_dssp             CTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHH
T ss_pred             ccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHh
Confidence            543321   23346788899999999888999999999999999999999998632210    0000011   1122222


Q ss_pred             hhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCC
Q 042435          345 YQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKK  396 (412)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  396 (412)
                      ......+.+...   ...+.+++.+||+.||++|||+.|++++|+.+.....
T Consensus       258 ~~~~~~~~~~~~---~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~  306 (327)
T 3lxl_A          258 EEGQRLPAPPAC---PAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSR  306 (327)
T ss_dssp             HTTCCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-----
T ss_pred             hcccCCCCCCcc---cHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence            222222222222   2347899999999999999999999999998876544

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=1.3e-39  Score=327.39  Aligned_cols=226  Identities=23%  Similarity=0.366  Sum_probs=186.6

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|.+.+.||+|+||.||+|... +|+.||||.+                        +|+++.....++...+..++||
T Consensus        16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~   95 (476)
T 2y94_A           16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM   95 (476)
T ss_dssp             TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            57999999999999999999875 7999999964                        5788888888889999999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        96 E~~~gg~L~~~l~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~  169 (476)
T 2y94_A           96 EYVSGGELFDYICKNG---RLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG  169 (476)
T ss_dssp             ECCSSEEHHHHTTSSS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEECCTT
T ss_pred             eCCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhcccc
Confidence            9999999999987653   589999999999999999999998   9999999999999999999999999999876543


Q ss_pred             CCCcccccccccccccccccCccc-CcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVV-TEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~-s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      . ......||+.|+|||++.+..+ +.++|||||||++|||++|+.||+..       ........+.......+  ...
T Consensus       170 ~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~-------~~~~~~~~i~~~~~~~p--~~~  239 (476)
T 2y94_A          170 E-FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD-------HVPTLFKKICDGIFYTP--QYL  239 (476)
T ss_dssp             C-CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCS-------SSHHHHHHHHTTCCCCC--TTC
T ss_pred             c-cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCC-------CHHHHHHHHhcCCcCCC--ccC
Confidence            2 2344579999999999988765 68999999999999999999999732       11112222222222211  111


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                         ...+.+++.+||+.||++|||+.|++++
T Consensus       240 ---s~~~~~Li~~~L~~dP~~Rpt~~eil~h  267 (476)
T 2y94_A          240 ---NPSVISLLKHMLQVDPMKRATIKDIREH  267 (476)
T ss_dssp             ---CHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             ---CHHHHHHHHHHcCCCchhCcCHHHHHhC
Confidence               1237889999999999999999999985

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=1.3e-39  Score=311.48  Aligned_cols=231  Identities=21%  Similarity=0.246  Sum_probs=184.3

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------------cCCccccceEEEecCceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------------HHSETEDSAFVVYSPQCM  193 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------------~~~~~~~~~~~~~~~~~~  193 (412)
                      .++|++.+.||+|+||.||+|... +|+.||+|.+                           +|+++......+...+..
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   90 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV   90 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence            467999999999999999999874 6899999965                           356666666778888999


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC----cEEEeecC
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL----EAFVADFG  269 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~----~~kl~DfG  269 (412)
                      ++||||+++++|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+||+++.++    .+||+|||
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg  164 (321)
T 2a2a_A           91 VLILELVSGGELFDFLAQKE---SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFG  164 (321)
T ss_dssp             EEEECCCCSCBHHHHHHTCS---CEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCT
T ss_pred             EEEEEcCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEccCc
Confidence            99999999999999987643   588999999999999999999999   999999999999999887    79999999


Q ss_pred             CccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          270 TVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       270 la~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      +++...... ......||+.|+|||++.+..++.++||||||+++|||++|+.||...       ........+......
T Consensus       165 ~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-------~~~~~~~~i~~~~~~  236 (321)
T 2a2a_A          165 LAHEIEDGV-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-------TKQETLANITSVSYD  236 (321)
T ss_dssp             TCEECCTTC-CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-------SHHHHHHHHHTTCCC
T ss_pred             cceecCccc-cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCC-------CHHHHHHHHHhcccc
Confidence            998765432 223456899999999999999999999999999999999999998632       111111111111111


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .+ ..........+.+++.+||+.||++|||+.|++++
T Consensus       237 ~~-~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~h  273 (321)
T 2a2a_A          237 FD-EEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRH  273 (321)
T ss_dssp             CC-HHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred             cC-hhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            11 01111122347899999999999999999999985

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=1.3e-39  Score=305.12  Aligned_cols=228  Identities=26%  Similarity=0.353  Sum_probs=182.8

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      +.++|++.+.||+|+||.||+|... +++.||+|.+                        +|+++......+...+..++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   86 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL   86 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence            3578999999999999999999764 5789999964                        57888888888889999999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||||+++|+|.+++....   .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++....
T Consensus        87 v~e~~~~~~l~~~l~~~~---~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~  160 (279)
T 3fdn_A           87 ILEYAPLGTVYRELQKLS---KFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAP  160 (279)
T ss_dssp             EECCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESCC-
T ss_pred             EEecCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEeccccccCC
Confidence            999999999998886543   589999999999999999999998   99999999999999999999999999986543


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ..  ......||+.|+|||.+.+..++.++||||||+++|||++|+.||...       ........+.......  +..
T Consensus       161 ~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-------~~~~~~~~~~~~~~~~--~~~  229 (279)
T 3fdn_A          161 SS--RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN-------TYQETYKRISRVEFTF--PDF  229 (279)
T ss_dssp             ---------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS-------SHHHHHHHHHHTCCCC--CTT
T ss_pred             cc--cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCC-------cHHHHHHHHHhCCCCC--CCc
Confidence            22  223457899999999999999999999999999999999999998732       1111111111111111  111


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      .   ...+.+++.+||+.||++|||+.|++++-
T Consensus       230 ~---~~~~~~li~~~l~~~p~~Rps~~e~l~h~  259 (279)
T 3fdn_A          230 V---TEGARDLISRLLKHNPSQRPMLREVLEHP  259 (279)
T ss_dssp             S---CHHHHHHHHHHCCSSGGGSCCHHHHHHCH
T ss_pred             C---CHHHHHHHHHHhccChhhCCCHHHHhhCc
Confidence            1   12377899999999999999999999864

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=4.6e-40  Score=314.34  Aligned_cols=235  Identities=19%  Similarity=0.229  Sum_probs=168.9

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .++|++.+.||+|+||.||+|... +|+.||+|.+                      +|+++.....++..++..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   83 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE   83 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence            467999999999999999999774 6899999965                      46777777778888899999999


Q ss_pred             eccCCceeeeeccCc---ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          199 YMERGSLFCVLRDDD---EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       199 y~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      |++ |+|.+++....   ....+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++...
T Consensus        84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~  159 (317)
T 2pmi_A           84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARAFG  159 (317)
T ss_dssp             CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred             ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence            998 69988876432   112489999999999999999999999   99999999999999999999999999998765


Q ss_pred             CCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCc---------
Q 042435          276 VDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPK---------  337 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~---------  337 (412)
                      ..........||+.|+|||++.+ ..++.++|||||||++|||++|+.||........        .....         
T Consensus       160 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  239 (317)
T 2pmi_A          160 IPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKL  239 (317)
T ss_dssp             SCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGC
T ss_pred             CCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhh
Confidence            44444445678999999999876 4689999999999999999999999863211000        00000         


Q ss_pred             ------------chhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          338 ------------IMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       338 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                                  ....+...+....       .....+.+++.+||+.||++|||+.|++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h  294 (317)
T 2pmi_A          240 PKYNPNIQQRPPRDLRQVLQPHTKE-------PLDGNLMDFLHGLLQLNPDMRLSAKQALHH  294 (317)
T ss_dssp             TTCCTTCCCCCCCCSHHHHGGGCSS-------CCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             hhcccccccccchhHHHhhcccccc-------cCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence                        0000000000000       012248899999999999999999999875

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.1e-39  Score=310.32  Aligned_cols=238  Identities=21%  Similarity=0.262  Sum_probs=177.5

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ++|++.+.||+|+||.||+|... +|+.||+|++                       +|+++......+...+..++|||
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE   82 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence            67999999999999999999875 5999999964                       57777778888888999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++++|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++......
T Consensus        83 ~~~~~~l~~~~~~~~---~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  156 (311)
T 4agu_A           83 YCDHTVLHELDRYQR---GVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTGPS  156 (311)
T ss_dssp             CCSEEHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC---
T ss_pred             eCCCchHHHHHhhhc---CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcc
Confidence            999999988876543   489999999999999999999999   99999999999999999999999999998765444


Q ss_pred             CCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcchhhHHh-----
Q 042435          279 SNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKIMLIDIL-----  344 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~~~~~~~-----  344 (412)
                      .......||+.|+|||++.+ ..++.++||||||+++|||++|+.||........        ..... ......     
T Consensus       157 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  235 (311)
T 4agu_A          157 DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIP-RHQQVFSTNQY  235 (311)
T ss_dssp             ---------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCH-HHHHHHHTCGG
T ss_pred             cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhccccc-ccccccccccc
Confidence            44455678999999999876 6689999999999999999999999863211000        00000 000000     


Q ss_pred             -hh-ccCCcc-----chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          345 -YQ-RLSPPI-----NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       345 -~~-~~~~~~-----~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                       .. ....+.     ..........+.+++.+||+.||++|||++|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  285 (311)
T 4agu_A          236 FSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH  285 (311)
T ss_dssp             GTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred             cccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence             00 000000     00001122347889999999999999999999976

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=4.5e-40  Score=323.11  Aligned_cols=177  Identities=28%  Similarity=0.397  Sum_probs=143.3

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecC--ceE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSP--QCM  193 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~--~~~  193 (412)
                      ..++|++.+.||+|+||.||+|.. .+|+.||||++                        .|+++.....++...  ...
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~   86 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV   86 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence            457899999999999999999976 57999999965                        277787777776543  478


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ++|||||+ |+|.+++...    .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.
T Consensus        87 ~lv~e~~~-~~L~~~~~~~----~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~  158 (388)
T 3oz6_A           87 YLVFDYME-TDLHAVIRAN----ILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSRS  158 (388)
T ss_dssp             EEEEECCS-EEHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEecccC-cCHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCccccc
Confidence            99999997 5888888653    489999999999999999999999   999999999999999999999999999986


Q ss_pred             cCCC---------------------CCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcc
Q 042435          274 LDVD---------------------SSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGE  325 (412)
Q Consensus       274 ~~~~---------------------~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~  325 (412)
                      ....                     ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~  232 (388)
T 3oz6_A          159 FVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFP  232 (388)
T ss_dssp             SSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             ccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCC
Confidence            5321                     111234579999999999876 678999999999999999999999996

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-39  Score=306.85  Aligned_cols=234  Identities=21%  Similarity=0.270  Sum_probs=184.9

Q ss_pred             cCcccce-eeeecCceEEEEEEeC---CCcEEEEEec----------------------cCCccccceEEEecCceEEEE
Q 042435          143 EYFHIRY-CIGTGGYDSVYKAELP---DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~-~lG~G~~g~Vy~~~~~---~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ++|.+.. .||+|+||.||+|.+.   +++.||+|.+                      +|+++......+ ..+..++|
T Consensus         9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv   87 (287)
T 1u59_A            9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLV   87 (287)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEE
T ss_pred             HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEE
Confidence            4566666 9999999999999763   5788999975                      456666666666 55678999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++++|.+++....  ..+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++....
T Consensus        88 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~  162 (287)
T 1u59_A           88 MEMAGGGPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGA  162 (287)
T ss_dssp             EECCTTEEHHHHHTTCT--TTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECTT
T ss_pred             EEeCCCCCHHHHHHhCC--ccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeeecc
Confidence            99999999999986543  2489999999999999999999999   999999999999999999999999999987644


Q ss_pred             CCCC---cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          277 DSSN---RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       277 ~~~~---~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ....   .....+|+.|+|||++.+..++.++||||||+++|||+| |+.||...       . .......+........
T Consensus       163 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~-------~-~~~~~~~i~~~~~~~~  234 (287)
T 1u59_A          163 DDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM-------K-GPEVMAFIEQGKRMEC  234 (287)
T ss_dssp             CSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC-------C-THHHHHHHHTTCCCCC
T ss_pred             CcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccC-------C-HHHHHHHHhcCCcCCC
Confidence            3221   223456889999999988889999999999999999999 99998732       1 1122222222222222


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      +...   ...+.+++.+||+.||++||++.|++++|+++..
T Consensus       235 ~~~~---~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~  272 (287)
T 1u59_A          235 PPEC---PPELYALMSDCWIYKWEDRPDFLTVEQRMRACYY  272 (287)
T ss_dssp             CTTC---CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCc---CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            2222   2348889999999999999999999999987743

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.3e-40  Score=321.47  Aligned_cols=233  Identities=25%  Similarity=0.360  Sum_probs=181.3

Q ss_pred             hcCcccceeeeecCceEEEEEEe----CCCcEEEEEecc--------------------------CCccccceEEEecCc
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL----PDGKVVALKKLH--------------------------HSETEDSAFVVYSPQ  191 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~----~~~~~vAvK~l~--------------------------~~~~~~~~~~~~~~~  191 (412)
                      .++|++.+.||+|+||.||+|+.    .+++.||||.++                          |+++......+...+
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  132 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  132 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence            36899999999999999999987    478999999753                          556666666777888


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                      ..++||||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||++
T Consensus       133 ~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~a  206 (355)
T 1vzo_A          133 KLHLILDYINGGELFTHLSQRE---RFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLS  206 (355)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEE
T ss_pred             eEEEEeecCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCCC
Confidence            9999999999999999987543   589999999999999999999999   9999999999999999999999999999


Q ss_pred             cccCCCCC-CcccccccccccccccccC--cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhcc
Q 042435          272 RLLDVDSS-NRTLQAGTYGYIALELVYT--MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRL  348 (412)
Q Consensus       272 ~~~~~~~~-~~~~~~gt~~y~aPE~~~~--~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~  348 (412)
                      +....... ......||+.|+|||++.+  ..++.++|||||||++|||++|+.||.....    ......+....... 
T Consensus       207 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~----~~~~~~~~~~~~~~-  281 (355)
T 1vzo_A          207 KEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGE----KNSQAEISRRILKS-  281 (355)
T ss_dssp             EECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTS----CCCHHHHHHHHHHC-
T ss_pred             eecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCc----cchHHHHHHHHhcc-
Confidence            86543221 2234579999999999985  3478899999999999999999999863210    00111111111111 


Q ss_pred             CCccchhhHHHHHHHHHHHHhcCcCCCCCCC-----CHHHHHHHH
Q 042435          349 SPPINQKIIQDIILVSTIALACLRSKPKSRP-----TMQRISQEL  388 (412)
Q Consensus       349 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~L  388 (412)
                      .++.+...   ...+.+++.+||+.||++||     +++|++++.
T Consensus       282 ~~~~~~~~---~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~  323 (355)
T 1vzo_A          282 EPPYPQEM---SALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHL  323 (355)
T ss_dssp             CCCCCTTS---CHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSG
T ss_pred             CCCCCccc---CHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCc
Confidence            11111211   22377899999999999999     999998875

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.2e-40  Score=320.51  Aligned_cols=235  Identities=23%  Similarity=0.315  Sum_probs=174.0

Q ss_pred             CcccceeeeecCceEEEEEEeC--C--CcEEEEEec----------------------cCCccccceEEEec-CceEEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP--D--GKVVALKKL----------------------HHSETEDSAFVVYS-PQCMFFI  196 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~--~--~~~vAvK~l----------------------~~~~~~~~~~~~~~-~~~~~lv  196 (412)
                      .|++.+.||+|+||.||+|.+.  +  +..||+|.+                      +|+++.....++.. .+..++|
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv  169 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV  169 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence            4677889999999999999763  2  246899965                      46777777776544 5678999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++|+|.++++....  .+++..+..++.|+++||+|||++   +|+||||||+|||++.++.+||+|||+++....
T Consensus       170 ~e~~~~g~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~  244 (373)
T 3c1x_A          170 LPYMKHGDLRNFIRNETH--NPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYD  244 (373)
T ss_dssp             EECCTTCBHHHHHHCTTC--CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred             EECCCCCCHHHHHhhccc--CCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeeccccccccc
Confidence            999999999999976432  478999999999999999999999   999999999999999999999999999986543


Q ss_pred             CCC----CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCc
Q 042435          277 DSS----NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPP  351 (412)
Q Consensus       277 ~~~----~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (412)
                      ...    ......+|+.|+|||.+.+..++.++||||||+++|||+| |..||...       .... ....+.......
T Consensus       245 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~-------~~~~-~~~~~~~~~~~~  316 (373)
T 3c1x_A          245 KEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV-------NTFD-ITVYLLQGRRLL  316 (373)
T ss_dssp             -------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS-------CSSC-HHHHHHTTCCCC
T ss_pred             cccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCC-------CHHH-HHHHHHcCCCCC
Confidence            221    1233457889999999999999999999999999999999 66776522       1111 122222211111


Q ss_pred             cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                      .+...   ...+.+++.+||+.||++|||+.|+++.|+++...
T Consensus       317 ~p~~~---~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~  356 (373)
T 3c1x_A          317 QPEYC---PDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  356 (373)
T ss_dssp             CCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             CCCCC---CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            11221   22378899999999999999999999999987543

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=6.5e-40  Score=319.31  Aligned_cols=236  Identities=13%  Similarity=0.095  Sum_probs=185.6

Q ss_pred             HHhhcCcccceeeeecCceEEEEEE------eCCCcEEEEEecc---------------------CCccccceEEEecCc
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAE------LPDGKVVALKKLH---------------------HSETEDSAFVVYSPQ  191 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~------~~~~~~vAvK~l~---------------------~~~~~~~~~~~~~~~  191 (412)
                      ....++|.+.+.||+|+||.||+|.      ..+++.||||.++                     |+++......+...+
T Consensus        61 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~  140 (365)
T 3e7e_A           61 QLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQN  140 (365)
T ss_dssp             ECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSS
T ss_pred             EECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCC
Confidence            3446789999999999999999993      4568999999763                     456666677788889


Q ss_pred             eEEEEEEeccCCceeeeeccCc--ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC----------
Q 042435          192 CMFFIYEYMERGSLFCVLRDDD--EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS----------  259 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~--~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~----------  259 (412)
                      ..++||||+++|+|.+++....  ....++|..++.++.|++.||+|||++   +|+||||||+|||++.          
T Consensus       141 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~~~~~~~~  217 (365)
T 3e7e_A          141 GSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDEDD  217 (365)
T ss_dssp             CEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGTCC-----
T ss_pred             CcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccccCcccccc
Confidence            9999999999999999997422  123599999999999999999999998   9999999999999988          


Q ss_pred             -CCcEEEeecCCccccCCC--CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCC
Q 042435          260 -NLEAFVADFGTVRLLDVD--SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGP  336 (412)
Q Consensus       260 -~~~~kl~DfGla~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~  336 (412)
                       ++.+||+|||+++.+...  ........||+.|+|||++.+..++.++|||||||++|||+||+.||......      
T Consensus       218 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~------  291 (365)
T 3e7e_A          218 LSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGG------  291 (365)
T ss_dssp             -CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETT------
T ss_pred             ccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCC------
Confidence             899999999999765422  22234567999999999999999999999999999999999999998632110      


Q ss_pred             cchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCC-CCHHHHHHHHhcCCC
Q 042435          337 KIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSR-PTMQRISQELEGKTP  393 (412)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~R-Ps~~evl~~L~~~~~  393 (412)
                      ...    .........   .   ...+.+++..|++.+|.+| |++.++.+.|++..+
T Consensus       292 ~~~----~~~~~~~~~---~---~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~  339 (365)
T 3e7e_A          292 ECK----PEGLFRRLP---H---LDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQ  339 (365)
T ss_dssp             EEE----ECSCCTTCS---S---HHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHH
T ss_pred             cee----echhccccC---c---HHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHH
Confidence            000    001111110   0   1125678889999999999 688888888877643

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=1.5e-39  Score=308.27  Aligned_cols=229  Identities=26%  Similarity=0.382  Sum_probs=186.7

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------------cCCccccceEEEecCceEEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .+.|++.+.||+|+||.||+|.. .+++.||+|.+                      +|+++......+...+..++|||
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e  100 (303)
T 3a7i_A           21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME  100 (303)
T ss_dssp             GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence            45689999999999999999976 56899999965                      45667777777888889999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++++|.+++...    .+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||++.......
T Consensus       101 ~~~~~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~  173 (303)
T 3a7i_A          101 YLGGGSALDLLEPG----PLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ  173 (303)
T ss_dssp             CCTTEEHHHHHTTS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTTB
T ss_pred             eCCCCcHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCccc
Confidence            99999999988653    489999999999999999999999   99999999999999999999999999998765544


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      .......||+.|+|||++.+..++.++||||||+++|||++|+.||....        .......+.....+......  
T Consensus       174 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~--  243 (303)
T 3a7i_A          174 IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELH--------PMKVLFLIPKNNPPTLEGNY--  243 (303)
T ss_dssp             CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC--------HHHHHHHHHHSCCCCCCSSC--
T ss_pred             cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcC--------HHHHHHHhhcCCCCCCcccc--
Confidence            44455678999999999999999999999999999999999999986321        11111122222221111111  


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                       ...+.+++.+||+.||++|||+.|++++.
T Consensus       244 -~~~l~~li~~~l~~dp~~Rps~~~ll~~~  272 (303)
T 3a7i_A          244 -SKPLKEFVEACLNKEPSFRPTAKELLKHK  272 (303)
T ss_dssp             -CHHHHHHHHHHCCSSGGGSCCHHHHTTCH
T ss_pred             -CHHHHHHHHHHcCCChhhCcCHHHHhhCh
Confidence             22378899999999999999999998864

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=8.7e-40  Score=306.39  Aligned_cols=234  Identities=22%  Similarity=0.344  Sum_probs=186.9

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------cCCccccceEEEec-------------
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------HHSETEDSAFVVYS-------------  189 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------~~~~~~~~~~~~~~-------------  189 (412)
                      ..++|++.+.||+|+||.||+|... +++.||+|.+                 +|+++......+..             
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~   88 (284)
T 2a19_B            9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSS   88 (284)
T ss_dssp             HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCSGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------
T ss_pred             hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEeccccHHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccccccc
Confidence            3467999999999999999999885 7999999965                 46677666555432             


Q ss_pred             ---CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEe
Q 042435          190 ---PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVA  266 (412)
Q Consensus       190 ---~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~  266 (412)
                         ....++||||+++|+|.+++..... ..+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+
T Consensus        89 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~  164 (284)
T 2a19_B           89 RSKTKCLFIQMEFCDKGTLEQWIEKRRG-EKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTKQVKIG  164 (284)
T ss_dssp             CCEEEEEEEEECCCCSCBHHHHHHHGGG-SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEEC
T ss_pred             ccCcceEEEEEeccCCCCHHHHHhhccC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCCCCEEEC
Confidence               4568999999999999999975432 2589999999999999999999999   99999999999999999999999


Q ss_pred             ecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhh
Q 042435          267 DFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ  346 (412)
Q Consensus       267 DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~  346 (412)
                      |||+++...... ......||+.|+|||.+.+..++.++||||||+++|||++|..|+.....         ........
T Consensus       165 Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~---------~~~~~~~~  234 (284)
T 2a19_B          165 DFGLVTSLKNDG-KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSK---------FFTDLRDG  234 (284)
T ss_dssp             CCTTCEESSCCS-CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHH---------HHHHHHTT
T ss_pred             cchhheeccccc-cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHH---------HHHHhhcc
Confidence            999998765432 22345689999999999998999999999999999999999998752210         11111111


Q ss_pred             ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCC
Q 042435          347 RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMK  395 (412)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  395 (412)
                      .....    .   ...+.+++.+||+.||++|||+.|++++|+.+....
T Consensus       235 ~~~~~----~---~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~  276 (284)
T 2a19_B          235 IISDI----F---DKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSP  276 (284)
T ss_dssp             CCCTT----S---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC--
T ss_pred             ccccc----C---CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCC
Confidence            11111    1   123678999999999999999999999999887654

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=9.1e-40  Score=313.62  Aligned_cols=242  Identities=20%  Similarity=0.276  Sum_probs=187.1

Q ss_pred             ccHHHHHHhhcCcccc-eeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEE
Q 042435          133 ILYENLIDATEYFHIR-YCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFV  186 (412)
Q Consensus       133 ~~~~~l~~~~~~f~~~-~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~  186 (412)
                      +.++......+.|.+. +.||+|+||.||+|... +++.||+|.+                        +|+++......
T Consensus        18 ~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~   97 (327)
T 3lm5_A           18 LYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEV   97 (327)
T ss_dssp             CCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEE
T ss_pred             hHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEE
Confidence            4455566667778887 89999999999999775 6999999965                        34677777778


Q ss_pred             EecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC---CCcE
Q 042435          187 VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS---NLEA  263 (412)
Q Consensus       187 ~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~---~~~~  263 (412)
                      +...+..++||||+++|+|.+++..... ..+++..+..++.|++.||+|||++   +|+||||||+||+++.   ++.+
T Consensus        98 ~~~~~~~~lv~e~~~~~~L~~~~~~~~~-~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~~~~  173 (327)
T 3lm5_A           98 YENTSEIILILEYAAGGEIFSLCLPELA-EMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLGDI  173 (327)
T ss_dssp             EECSSEEEEEEECCTTEEGGGGGSSCC--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTBCCE
T ss_pred             EEeCCeEEEEEEecCCCcHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCCCcE
Confidence            8889999999999999999998865422 2589999999999999999999999   9999999999999987   7899


Q ss_pred             EEeecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHH
Q 042435          264 FVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDI  343 (412)
Q Consensus       264 kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~  343 (412)
                      ||+|||+++...... ......||+.|+|||++.+..++.++||||||+++|||++|+.||...       ........+
T Consensus       174 kL~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-------~~~~~~~~i  245 (327)
T 3lm5_A          174 KIVDFGMSRKIGHAC-ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGE-------DNQETYLNI  245 (327)
T ss_dssp             EECCGGGCEEC----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHH
T ss_pred             EEeeCccccccCCcc-ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-------CchHHHHHH
Confidence            999999998764332 223457999999999999999999999999999999999999998632       111111122


Q ss_pred             hhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          344 LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .......+. .........+.+++.+||+.||++|||++|++++
T Consensus       246 ~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h  288 (327)
T 3lm5_A          246 SQVNVDYSE-ETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSH  288 (327)
T ss_dssp             HHTCCCCCT-TTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred             HhcccccCc-hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCC
Confidence            211111111 1111122347889999999999999999999876

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=3.2e-39  Score=301.49  Aligned_cols=231  Identities=21%  Similarity=0.247  Sum_probs=184.1

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .++|++.+.||+|+||.||+|... +++.||+|.+                      +|+++......+...+..++|||
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   85 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence            467999999999999999999875 7899999964                      46777777777888899999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++++|.+++....   .+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|||++.......
T Consensus        86 ~~~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~  159 (276)
T 2yex_A           86 YCSGGELFDRIEPDI---GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNN  159 (276)
T ss_dssp             CCTTEEGGGGSBTTT---BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred             ecCCCcHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCCCc
Confidence            999999999987543   589999999999999999999998   99999999999999999999999999998654322


Q ss_pred             --CCcccccccccccccccccCccc-CcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          279 --SNRTLQAGTYGYIALELVYTMVV-TEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       279 --~~~~~~~gt~~y~aPE~~~~~~~-s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                        .......||+.|+|||.+.+..+ +.++||||||+++|||++|+.||....      ........+.......+... 
T Consensus       160 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~-  232 (276)
T 2yex_A          160 RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS------DSCQEYSDWKEKKTYLNPWK-  232 (276)
T ss_dssp             EECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSC------TTSHHHHHHHTTCTTSTTGG-
T ss_pred             chhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCc------hHHHHHHHhhhcccccCchh-
Confidence              12234578999999999987665 779999999999999999999987321      11111222222111111111 


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                        .....+.+++.+||+.||++|||++|++++
T Consensus       233 --~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (276)
T 2yex_A          233 --KIDSAPLALLHKILVENPSARITIPDIKKD  262 (276)
T ss_dssp             --GSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             --hcCHHHHHHHHHHCCCCchhCCCHHHHhcC
Confidence              112247789999999999999999999875

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=1.3e-39  Score=318.26  Aligned_cols=227  Identities=21%  Similarity=0.222  Sum_probs=177.5

Q ss_pred             cceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEeccCCc
Q 042435          147 IRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEYMERGS  204 (412)
Q Consensus       147 ~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~gs  204 (412)
                      ..+.||+|+||.||+|.. .+|+.||+|.+                     +|+++......+...+..++||||+++|+
T Consensus        93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~  172 (373)
T 2x4f_A           93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGE  172 (373)
T ss_dssp             EEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCE
T ss_pred             cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCc
Confidence            357899999999999976 56999999964                     57888888888999999999999999999


Q ss_pred             eeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe--cCCCcEEEeecCCccccCCCCCCcc
Q 042435          205 LFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL--NSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       205 L~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl--~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |.+++....  ..+++..+..++.|++.||+|||+.   +|+||||||+|||+  +.++.+||+|||+++...... ...
T Consensus       173 L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~-~~~  246 (373)
T 2x4f_A          173 LFDRIIDES--YNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPRE-KLK  246 (373)
T ss_dssp             EHHHHHHTG--GGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTC-BCC
T ss_pred             HHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCcc-ccc
Confidence            998886543  2589999999999999999999999   99999999999999  567899999999998765432 223


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL  362 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (412)
                      ...||+.|+|||++.+..++.++|||||||++|||++|+.||...       ........+.......+. .........
T Consensus       247 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~-------~~~~~~~~i~~~~~~~~~-~~~~~~~~~  318 (373)
T 2x4f_A          247 VNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGD-------NDAETLNNILACRWDLED-EEFQDISEE  318 (373)
T ss_dssp             CCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCS-------SHHHHHHHHHHTCCCSCS-GGGTTSCHH
T ss_pred             cccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC-------CHHHHHHHHHhccCCCCh-hhhccCCHH
Confidence            446999999999999889999999999999999999999998632       111122233332222111 111112234


Q ss_pred             HHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          363 VSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       363 ~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      +.+++.+||+.||++|||+.|++++
T Consensus       319 ~~~li~~~L~~dp~~Rps~~e~l~h  343 (373)
T 2x4f_A          319 AKEFISKLLIKEKSWRISASEALKH  343 (373)
T ss_dssp             HHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             HHHHHHHHcCCChhhCCCHHHHhcC
Confidence            8899999999999999999999984

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=1.8e-39  Score=303.68  Aligned_cols=231  Identities=19%  Similarity=0.264  Sum_probs=184.7

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------cCCccccceEEEecCceEEEEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ..++|++.+.||+|+||.||+|... ++..||+|++                     +|+++......+...+..++|||
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   86 (277)
T 3f3z_A            7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVME   86 (277)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEe
Confidence            3467999999999999999999875 5779999964                     57788888888889999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe---cCCCcEEEeecCCccccC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL---NSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl---~~~~~~kl~DfGla~~~~  275 (412)
                      |+++++|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+||++   +.++.+||+|||++....
T Consensus        87 ~~~~~~L~~~~~~~~---~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~  160 (277)
T 3f3z_A           87 LCTGGELFERVVHKR---VFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFK  160 (277)
T ss_dssp             CCCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred             ccCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEecccceecc
Confidence            999999998886543   589999999999999999999999   99999999999999   788999999999998765


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ... ......||+.|+|||.+.+. ++.++||||||+++|||++|+.||...       ........+.......+ ...
T Consensus       161 ~~~-~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~-------~~~~~~~~~~~~~~~~~-~~~  230 (277)
T 3f3z_A          161 PGK-MMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAP-------TDSEVMLKIREGTFTFP-EKD  230 (277)
T ss_dssp             TTS-CBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHCCCCCC-HHH
T ss_pred             Ccc-chhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCC-------CHHHHHHHHHhCCCCCC-chh
Confidence            433 23345799999999998654 899999999999999999999998732       11111222222222221 111


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .......+.+++.+||+.||++|||+.|++++
T Consensus       231 ~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h  262 (277)
T 3f3z_A          231 WLNVSPQAESLIRRLLTKSPKQRITSLQALEH  262 (277)
T ss_dssp             HTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred             hhcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            11223358899999999999999999999864

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.9e-39  Score=306.44  Aligned_cols=235  Identities=24%  Similarity=0.321  Sum_probs=183.5

Q ss_pred             CcccceeeeecCceEEEEEEeC-C---CcEEEEEec----------------------cCCccccceEEEecCceE-EEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAELP-D---GKVVALKKL----------------------HHSETEDSAFVVYSPQCM-FFI  196 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~-~---~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~-~lv  196 (412)
                      .|+..++||+|+||.||+|.+. +   +..||+|.+                      +|+++......+...+.. ++|
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v  101 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL  101 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence            4666789999999999999753 2   337999964                      577777777777665554 999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+.+|+|.+++....  ..+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|||+++....
T Consensus       102 ~e~~~~~~L~~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~  176 (298)
T 3pls_A          102 LPYMCHGDLLQFIRSPQ--RNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDILD  176 (298)
T ss_dssp             ECCCTTCBHHHHHHCTT--CCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTTTT
T ss_pred             EecccCCCHHHHHhccc--cCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCcccccC
Confidence            99999999999997643  2589999999999999999999999   999999999999999999999999999986533


Q ss_pred             CC----CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          277 DS----SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       277 ~~----~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ..    .......+|+.|+|||.+.+..++.++||||||+++|||++|..|+...       .........+......+.
T Consensus       177 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~  249 (298)
T 3pls_A          177 REYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRH-------IDPFDLTHFLAQGRRLPQ  249 (298)
T ss_dssp             GGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTT-------SCGGGHHHHHHTTCCCCC
T ss_pred             CcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCcc-------CCHHHHHHHhhcCCCCCC
Confidence            21    1223456789999999999999999999999999999999966664311       111222333333222222


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      +....   ..+.+++.+||+.||++|||+.|+++.|+++..
T Consensus       250 ~~~~~---~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~  287 (298)
T 3pls_A          250 PEYCP---DSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVS  287 (298)
T ss_dssp             CTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             Cccch---HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence            22222   237889999999999999999999999988754

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.9e-39  Score=312.51  Aligned_cols=223  Identities=20%  Similarity=0.312  Sum_probs=183.5

Q ss_pred             HhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------------cCCccccceEEEec
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------------HHSETEDSAFVVYS  189 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------------~~~~~~~~~~~~~~  189 (412)
                      +..++|++.+.||+|+||.||+|.. .+++.||||.+                             +|+++.....++..
T Consensus        21 ~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~  100 (335)
T 3dls_A           21 EYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFEN  100 (335)
T ss_dssp             HHHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEEC
T ss_pred             ccccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEee
Confidence            3457899999999999999999975 57899999965                             35566666677888


Q ss_pred             CceEEEEEEeccCC-ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeec
Q 042435          190 PQCMFFIYEYMERG-SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADF  268 (412)
Q Consensus       190 ~~~~~lv~ey~~~g-sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~Df  268 (412)
                      .+..++||||+.+| +|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+||
T Consensus       101 ~~~~~lv~e~~~~g~~l~~~~~~~~---~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Df  174 (335)
T 3dls_A          101 QGFFQLVMEKHGSGLDLFAFIDRHP---RLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDF  174 (335)
T ss_dssp             SSEEEEEEECCTTSCBHHHHHHTCC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCC
T ss_pred             CCEEEEEEEeCCCCccHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeec
Confidence            89999999999877 9998887654   589999999999999999999999   9999999999999999999999999


Q ss_pred             CCccccCCCCCCcccccccccccccccccCccc-CcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhc
Q 042435          269 GTVRLLDVDSSNRTLQAGTYGYIALELVYTMVV-TEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQR  347 (412)
Q Consensus       269 Gla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~  347 (412)
                      |+++...... ......||+.|+|||++.+..+ +.++||||||+++|||++|+.||.....             .....
T Consensus       175 g~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-------------~~~~~  240 (335)
T 3dls_A          175 GSAAYLERGK-LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE-------------TVEAA  240 (335)
T ss_dssp             TTCEECCTTC-CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG-------------GTTTC
T ss_pred             ccceECCCCC-ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH-------------HHhhc
Confidence            9998765433 2334579999999999988776 7899999999999999999999874211             11111


Q ss_pred             cCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          348 LSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+.  ..   ...+.+++.+||+.||++|||+.|++++
T Consensus       241 ~~~~~--~~---~~~l~~li~~~L~~dP~~Rps~~ell~h  275 (335)
T 3dls_A          241 IHPPY--LV---SKELMSLVSGLLQPVPERRTTLEKLVTD  275 (335)
T ss_dssp             CCCSS--CC---CHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred             cCCCc--cc---CHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            11111  11   1237889999999999999999999987

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=5.5e-40  Score=314.36  Aligned_cols=242  Identities=24%  Similarity=0.352  Sum_probs=180.4

Q ss_pred             cccHHHHHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEec
Q 042435          132 KILYENLIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVYS  189 (412)
Q Consensus       132 ~~~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~~  189 (412)
                      .+++.++....++|++.+.||+|+||.||+|.. .+|+.||||.+                     +|+++......+..
T Consensus        13 ~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   92 (326)
T 2x7f_A           13 EIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIK   92 (326)
T ss_dssp             ---CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEE
T ss_pred             hccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEee
Confidence            345566677889999999999999999999987 57899999975                     46677666666554


Q ss_pred             ------CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcE
Q 042435          190 ------PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEA  263 (412)
Q Consensus       190 ------~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~  263 (412)
                            .+..++||||+++|+|.+++..... ..+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+
T Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~  168 (326)
T 2x7f_A           93 KNPPGMDDQLWLVMEFCGAGSVTDLIKNTKG-NTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEV  168 (326)
T ss_dssp             CC--CCCCEEEEEEECCTTEEHHHHHHHSGG-GCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCE
T ss_pred             ccCccccceEEEEEEcCCCCcHHHHHHhccc-CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCE
Confidence                  5688999999999999999876532 3589999999999999999999999   99999999999999999999


Q ss_pred             EEeecCCccccCCCCCCccccccccccccccccc-----CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcc
Q 042435          264 FVADFGTVRLLDVDSSNRTLQAGTYGYIALELVY-----TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKI  338 (412)
Q Consensus       264 kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~  338 (412)
                      ||+|||++..............||+.|+|||++.     +..++.++||||||+++|||++|+.||....       ...
T Consensus       169 kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-------~~~  241 (326)
T 2x7f_A          169 KLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMH-------PMR  241 (326)
T ss_dssp             EECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSC-------HHH
T ss_pred             EEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCc-------HHH
Confidence            9999999987654333334557899999999987     5668899999999999999999999986321       111


Q ss_pred             hhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          339 MLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+.............   ...+.+++.+||+.||++|||+.|++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~h  287 (326)
T 2x7f_A          242 ALFLIPRNPAPRLKSKKW---SKKFQSFIESCLVKNHSQRPATEQLMKH  287 (326)
T ss_dssp             HHHHHHHSCCCCCSCSCS---CHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             HHHHhhcCccccCCcccc---CHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            111111111111111111   1237889999999999999999999884

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=1.5e-39  Score=304.87  Aligned_cols=236  Identities=21%  Similarity=0.260  Sum_probs=182.5

Q ss_pred             hhcCcccceeeeecCceEEEEEEeCC----CcEEEEEec----------------------cCCccccceEEEecCceEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELPD----GKVVALKKL----------------------HHSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~~----~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~  194 (412)
                      ..++|.+.+.||+|+||.||+|.+.+    +..||+|.+                      +|+++.....++. .+..+
T Consensus        10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~   88 (281)
T 3cc6_A           10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIE-EEPTW   88 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEEC-SSSCE
T ss_pred             cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCCE
Confidence            35679999999999999999997642    346999975                      4566666666554 45678


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      +||||+++++|.+++....  ..+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|||+++..
T Consensus        89 ~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~  163 (281)
T 3cc6_A           89 IIMELYPYGELGHYLERNK--NSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYI  163 (281)
T ss_dssp             EEEECCTTCBHHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGGGCC
T ss_pred             EEEecCCCCCHHHHHHhcc--ccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCCccc
Confidence            9999999999999986543  2489999999999999999999999   9999999999999999999999999999866


Q ss_pred             CCCCC-CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          275 DVDSS-NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       275 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ..... ......+|+.|+|||.+.+..++.++||||||+++|||+| |+.||...        ........+......+.
T Consensus       164 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~--------~~~~~~~~~~~~~~~~~  235 (281)
T 3cc6_A          164 EDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWL--------ENKDVIGVLEKGDRLPK  235 (281)
T ss_dssp             ---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS--------CGGGHHHHHHHTCCCCC
T ss_pred             ccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccC--------ChHHHHHHHhcCCCCCC
Confidence            44322 2233457889999999988889999999999999999998 99998622        11112222222222222


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      +...   ...+.+++.+||+.||++|||+.|++++|+++..
T Consensus       236 ~~~~---~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~  273 (281)
T 3cc6_A          236 PDLC---PPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQ  273 (281)
T ss_dssp             CTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCC---CHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHH
Confidence            2222   2237889999999999999999999999987643

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=1.7e-39  Score=319.10  Aligned_cols=182  Identities=19%  Similarity=0.266  Sum_probs=157.6

Q ss_pred             hhcCcccceeeeec--CceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEecCceEE
Q 042435          141 ATEYFHIRYCIGTG--GYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       141 ~~~~f~~~~~lG~G--~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~  194 (412)
                      ..++|++.+.||+|  +||.||+|... +|+.||||++                       +|+++.....++...+..+
T Consensus        23 ~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~  102 (389)
T 3gni_B           23 EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW  102 (389)
T ss_dssp             CGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             CCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE
Confidence            34679999999999  99999999875 7999999964                       5788888888889999999


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      +||||+++|+|.+++..... ..+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||.+...
T Consensus       103 lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~  178 (389)
T 3gni_B          103 VVTSFMAYGSAKDLICTHFM-DGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSM  178 (389)
T ss_dssp             EEEECCTTCBHHHHHHHTCT-TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred             EEEEccCCCCHHHHHhhhcc-cCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccceee
Confidence            99999999999999876422 2489999999999999999999999   9999999999999999999999999988644


Q ss_pred             CCCC-------CCcccccccccccccccccC--cccCcccccHHHHHHHHHHHhCCCCccc
Q 042435          275 DVDS-------SNRTLQAGTYGYIALELVYT--MVVTEKCVIYSFGVVALEVLMGTHPGEL  326 (412)
Q Consensus       275 ~~~~-------~~~~~~~gt~~y~aPE~~~~--~~~s~ksDv~S~Gvil~elltg~~P~~~  326 (412)
                      ....       .......||+.|+|||++.+  ..++.++|||||||++|||++|+.||..
T Consensus       179 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  239 (389)
T 3gni_B          179 ISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKD  239 (389)
T ss_dssp             EETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             ccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCC
Confidence            2211       11233478999999999987  5799999999999999999999999963

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=2.2e-39  Score=330.70  Aligned_cols=233  Identities=19%  Similarity=0.264  Sum_probs=187.7

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      .++|++.+.||+|+||.||+|... +|+.||+|.+                        +|+++......+.+.+..++|
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV  262 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence            467999999999999999999874 7999999964                        577888888888899999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++|+|.+++..... ..+++..+..++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+++....
T Consensus       263 mEy~~gg~L~~~l~~~~~-~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~  338 (576)
T 2acx_A          263 LTLMNGGDLKFHIYHMGQ-AGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPE  338 (576)
T ss_dssp             ECCCCSCBHHHHHHSSSS-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             EEcCCCCcHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceeccc
Confidence            999999999998876532 2489999999999999999999999   999999999999999999999999999987654


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .. ......||+.|+|||++.+..++.++|||||||++|||++|+.||.....    ......+...+... ....+...
T Consensus       339 ~~-~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~----~~~~~~i~~~i~~~-~~~~p~~~  412 (576)
T 2acx_A          339 GQ-TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKK----KIKREEVERLVKEV-PEEYSERF  412 (576)
T ss_dssp             TC-CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSS----CCCHHHHHHHHHHC-CCCCCTTS
T ss_pred             Cc-cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCccccc----chhHHHHHHHhhcc-cccCCccC
Confidence            32 23345899999999999998999999999999999999999999973210    00111122222111 11111111


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                         ...+.+++.+||+.||++||     +++|++++
T Consensus       413 ---s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~H  445 (576)
T 2acx_A          413 ---SPQARSLCSQLLCKDPAERLGCRGGSAREVKEH  445 (576)
T ss_dssp             ---CHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTS
T ss_pred             ---CHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhC
Confidence               22478899999999999999     78998865

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=8.6e-40  Score=307.55  Aligned_cols=231  Identities=18%  Similarity=0.270  Sum_probs=182.4

Q ss_pred             hcCcccceeeeecCceEEEEEEeCC-C-------cEEEEEec---------------------cCCccccceEEEecCce
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPD-G-------KVVALKKL---------------------HHSETEDSAFVVYSPQC  192 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~-~-------~~vAvK~l---------------------~~~~~~~~~~~~~~~~~  192 (412)
                      .++|.+.+.||+|+||.||+|.... +       ..||+|.+                     +|+++......+..++.
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   86 (289)
T 4fvq_A            7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE   86 (289)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred             hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence            3578999999999999999997643 3       57999964                     57788888888888899


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCc--------EE
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLE--------AF  264 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~--------~k  264 (412)
                      .++||||+++|+|.+++.....  .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.        +|
T Consensus        87 ~~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~k  161 (289)
T 4fvq_A           87 NILVQEFVKFGSLDTYLKKNKN--CINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPFIK  161 (289)
T ss_dssp             CEEEEECCTTCBHHHHHHHTGG--GCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCEEE
T ss_pred             CEEEEECCCCCCHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCcccccccceee
Confidence            9999999999999999976542  489999999999999999999999   9999999999999988877        99


Q ss_pred             EeecCCccccCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHH
Q 042435          265 VADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDI  343 (412)
Q Consensus       265 l~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~  343 (412)
                      |+|||+++....    .....||+.|+|||++.+ ..++.++||||||+++|||++|..|+...       .........
T Consensus       162 l~Dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~-------~~~~~~~~~  230 (289)
T 4fvq_A          162 LSDPGISITVLP----KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSA-------LDSQRKLQF  230 (289)
T ss_dssp             ECCCCSCTTTSC----HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTT-------SCHHHHHHH
T ss_pred             eccCcccccccC----ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccc-------cchHHHHHH
Confidence            999999875422    233468899999999987 67899999999999999999965553311       111111122


Q ss_pred             hhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          344 LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      .......+  ...   ...+.+++.+||+.||++|||+.|++++|+++..
T Consensus       231 ~~~~~~~~--~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~  275 (289)
T 4fvq_A          231 YEDRHQLP--APK---AAELANLINNCMDYEPDHRPSFRAIIRDLNSLFT  275 (289)
T ss_dssp             HHTTCCCC--CCS---SCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred             hhccCCCC--CCC---CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            22111111  111   1127789999999999999999999999999875

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=3.5e-40  Score=336.97  Aligned_cols=239  Identities=24%  Similarity=0.370  Sum_probs=190.4

Q ss_pred             hhcCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEec
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      ..++|++.+.||+|+||.||+|.+.++..||||.+                    +|+++.....++.. +..++||||+
T Consensus       265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~~  343 (535)
T 2h8h_A          265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYM  343 (535)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCC
T ss_pred             chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeehh
Confidence            45678899999999999999999988889999975                    46677776666654 6789999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC-C
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS-S  279 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~-~  279 (412)
                      ++|+|.++++.... ..+++.+++.++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+++...... .
T Consensus       344 ~~gsL~~~l~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~  419 (535)
T 2h8h_A          344 SKGSLLDFLKGETG-KYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT  419 (535)
T ss_dssp             TTEEHHHHHSHHHH-TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHH
T ss_pred             cCCcHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccceecCCCcee
Confidence            99999999975322 2489999999999999999999999   99999999999999999999999999998654321 1


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      ......++..|+|||++.+..++.++|||||||++|||+| |+.||....        .....+.+......+.+...  
T Consensus       420 ~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~--------~~~~~~~i~~~~~~~~~~~~--  489 (535)
T 2h8h_A          420 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--------NREVLDQVERGYRMPCPPEC--  489 (535)
T ss_dssp             TTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCC--------HHHHHHHHHTTCCCCCCTTC--
T ss_pred             cccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--------HHHHHHHHHcCCCCCCCCCC--
Confidence            1123356789999999998899999999999999999999 999986321        11122222222222222222  


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCC
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMK  395 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  395 (412)
                       ...+.+++.+||+.||++|||+++|++.|+.+....
T Consensus       490 -~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~  525 (535)
T 2h8h_A          490 -PESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST  525 (535)
T ss_dssp             -CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCC
T ss_pred             -CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhcc
Confidence             224788999999999999999999999999986543

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=7.1e-40  Score=322.70  Aligned_cols=245  Identities=19%  Similarity=0.250  Sum_probs=189.1

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCc--eEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQ--CMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~--~~~lv  196 (412)
                      .++|.+.++||+|+||.||+|... +|+.||||.+                      +|+++.....++...+  ..++|
T Consensus         8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv   87 (396)
T 4eut_A            8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI   87 (396)
T ss_dssp             SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred             CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence            357999999999999999999875 5999999975                      4666776666666544  78999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe----cCCCcEEEeecCCcc
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL----NSNLEAFVADFGTVR  272 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl----~~~~~~kl~DfGla~  272 (412)
                      |||+++|+|.+++........+++..+..++.|++.||+|||+.   +|+||||||+|||+    +.++.+||+|||+++
T Consensus        88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~  164 (396)
T 4eut_A           88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR  164 (396)
T ss_dssp             ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGGCE
T ss_pred             EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCCce
Confidence            99999999999998765444599999999999999999999999   99999999999999    778889999999998


Q ss_pred             ccCCCCCCcccccccccccccccccC--------cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHh
Q 042435          273 LLDVDSSNRTLQAGTYGYIALELVYT--------MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDIL  344 (412)
Q Consensus       273 ~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~  344 (412)
                      ...... ......||+.|+|||++.+        ..++.++|||||||++|||+||+.||......   ......+..+.
T Consensus       165 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~---~~~~~~~~~~~  240 (396)
T 4eut_A          165 ELEDDE-QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGP---RRNKEVMYKII  240 (396)
T ss_dssp             ECCCGG-GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCT---TTCHHHHHHHH
T ss_pred             EccCCC-ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcc---cchHHHHHHHh
Confidence            764332 2234569999999999864        56788999999999999999999999632110   01111111111


Q ss_pred             hhccC--------------------CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          345 YQRLS--------------------PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       345 ~~~~~--------------------~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      .....                    +............+.+++.+||+.||++||++.|+++.++++..
T Consensus       241 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~  309 (396)
T 4eut_A          241 TGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH  309 (396)
T ss_dssp             HSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHT
T ss_pred             cCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhh
Confidence            11100                    00011112334458899999999999999999999999987654

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=2.5e-40  Score=309.60  Aligned_cols=238  Identities=24%  Similarity=0.317  Sum_probs=184.8

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEE--ecCceEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVV--YSPQCMFF  195 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~--~~~~~~~l  195 (412)
                      .++|++.+.||+|+||.||+|... +++.||+|.+                       +|+++......+  ......++
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence            468999999999999999999874 6899999965                       466666666654  34678999


Q ss_pred             EEEeccCCceeeeeccCcc-cccCCHHHHHHHHHHHHHHHHHHHhCCCCC-----cEEeCCCCCCEEecCCCcEEEeecC
Q 042435          196 IYEYMERGSLFCVLRDDDE-AIELNWTRRMNIVKSVAHALSYLHHDCTPS-----IVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~-----ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      ||||+++|+|.+++..... ...+++..+..++.|++.||+|||+.   +     ++||||||+||+++.++.+||+|||
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg  161 (279)
T 2w5a_A           85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLGDFG  161 (279)
T ss_dssp             EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEECCCC
T ss_pred             EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEEecCc
Confidence            9999999999999875432 23489999999999999999999998   6     9999999999999999999999999


Q ss_pred             CccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          270 TVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       270 la~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      +++.............||+.|+|||.+.+..++.++||||||+++|||++|+.||....        .......+.....
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--------~~~~~~~i~~~~~  233 (279)
T 2w5a_A          162 LARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFS--------QKELAGKIREGKF  233 (279)
T ss_dssp             HHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSS--------HHHHHHHHHHTCC
T ss_pred             hheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccC--------HHHHHHHHhhccc
Confidence            99876543322334578999999999998899999999999999999999999987321        1112222222211


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      ...+...   ...+.+++.+||+.||++|||+.|+++++....+
T Consensus       234 ~~~~~~~---~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~~  274 (279)
T 2w5a_A          234 RRIPYRY---SDELNEIITRMLNLKDYHRPSVEEILENPLILEH  274 (279)
T ss_dssp             CCCCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCGG
T ss_pred             ccCCccc---CHHHHHHHHHHcCCCcccCCCHHHHHhChhhhhh
Confidence            1221221   2237889999999999999999999988765443

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=1.1e-39  Score=328.42  Aligned_cols=241  Identities=16%  Similarity=0.222  Sum_probs=185.5

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEeccC--------------------CccccceEEEecCceEEEEEEec
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHH--------------------SETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~--------------------~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      .++|++.++||+|+||.||+|.. .+++.||||.++.                    ..+..........+..++||||+
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~~   85 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDLL   85 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEECC
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEECC
Confidence            46899999999999999999986 5799999996532                    22233344456778889999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe---cCCCcEEEeecCCccccCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL---NSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl---~~~~~~kl~DfGla~~~~~~  277 (412)
                       +++|.+++....  ..+++..++.|+.||+.||+|||++   +|+||||||+|||+   +.++.+||+|||+++.....
T Consensus        86 -g~sL~~ll~~~~--~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~  159 (483)
T 3sv0_A           86 -GPSLEDLFNFCS--RKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDT  159 (483)
T ss_dssp             -CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred             -CCCHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceeccCC
Confidence             999999987433  2599999999999999999999999   99999999999999   68899999999999876543


Q ss_pred             CCC-------cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCC
Q 042435          278 SSN-------RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP  350 (412)
Q Consensus       278 ~~~-------~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (412)
                      ...       .....||+.|+|||++.+..++.++|||||||++|||++|+.||.....    .........+.......
T Consensus       160 ~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~----~~~~~~~~~i~~~~~~~  235 (483)
T 3sv0_A          160 STHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKA----GTKKQKYEKISEKKVAT  235 (483)
T ss_dssp             TTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCC----SSHHHHHHHHHHHHHHS
T ss_pred             ccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccc----hhHHHHHHHHhhccccc
Confidence            221       1255799999999999999999999999999999999999999974211    00011111222221111


Q ss_pred             ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       351 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ............+.+++..||+.||++||++.+|++.|+++.
T Consensus       236 ~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~  277 (483)
T 3sv0_A          236 SIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLF  277 (483)
T ss_dssp             CHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHH
T ss_pred             cHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHH
Confidence            111111111234889999999999999999999999998763

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=6.4e-40  Score=311.85  Aligned_cols=244  Identities=19%  Similarity=0.227  Sum_probs=179.9

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ..++|++.+.||+|+||.||+|.. .+|+.||+|++                        +|+++......+...+..++
T Consensus        30 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l  109 (310)
T 2wqm_A           30 TLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNI  109 (310)
T ss_dssp             SGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             cccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEE
Confidence            346799999999999999999976 57999999965                        35667777777888899999


Q ss_pred             EEEeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          196 IYEYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      ||||+++|+|.+++.... ....+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++..
T Consensus       110 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~  186 (310)
T 2wqm_A          110 VLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFF  186 (310)
T ss_dssp             EEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC------
T ss_pred             EEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEeccceeee
Confidence            999999999999886432 123589999999999999999999999   9999999999999999999999999999876


Q ss_pred             CCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhh-ccCCccc
Q 042435          275 DVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ-RLSPPIN  353 (412)
Q Consensus       275 ~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  353 (412)
                      ...........|++.|+|||.+.+..++.++||||||+++|||++|+.||....      .........+.. .......
T Consensus       187 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~  260 (310)
T 2wqm_A          187 SSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK------MNLYSLCKKIEQCDYPPLPS  260 (310)
T ss_dssp             ------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---------CCHHHHHHHHHTTCSCCCCT
T ss_pred             cCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccc------hhHHHHHHHhhcccCCCCcc
Confidence            544333344578999999999999999999999999999999999999986321      111111111111 1111111


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCC
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKK  396 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  396 (412)
                      ..   ....+.+++.+||+.||++|||+.++++.|+++.+..+
T Consensus       261 ~~---~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~  300 (310)
T 2wqm_A          261 DH---YSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTA  300 (310)
T ss_dssp             TT---SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             cc---cCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhh
Confidence            11   12237889999999999999999999999998875433

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=1.3e-39  Score=331.23  Aligned_cols=233  Identities=21%  Similarity=0.307  Sum_probs=186.6

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|.+.+.||+|+||.||+|+.. +|+.||+|++                        +|+++......+.+.+..|+||
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm  264 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM  264 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence            67999999999999999999874 6999999965                        4677777777888899999999


Q ss_pred             EeccCCceeeeeccCcc-cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          198 EYMERGSLFCVLRDDDE-AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      ||+++|+|.+++..... ...+++..+..++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+++....
T Consensus       265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~  341 (543)
T 3c4z_A          265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVELKA  341 (543)
T ss_dssp             CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceeeeccC
Confidence            99999999998875432 23589999999999999999999999   999999999999999999999999999987655


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .........||+.|+|||++.+..++.++|||||||++|||+||+.||.....   ..........+.......+  ...
T Consensus       342 ~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~---~~~~~~~~~~i~~~~~~~p--~~~  416 (543)
T 3c4z_A          342 GQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGE---KVENKELKQRVLEQAVTYP--DKF  416 (543)
T ss_dssp             TCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTC---CCCHHHHHHHHHHCCCCCC--TTS
T ss_pred             CCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCcc---chhHHHHHHHHhhcccCCC--ccc
Confidence            44444456899999999999999999999999999999999999999973210   0000111122222222211  111


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCH-----HHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTM-----QRISQ  386 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~-----~evl~  386 (412)
                         ...+.+++.+||+.||++||++     +|+.+
T Consensus       417 ---s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~  448 (543)
T 3c4z_A          417 ---SPASKDFCEALLQKDPEKRLGFRDGSCDGLRT  448 (543)
T ss_dssp             ---CHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHT
T ss_pred             ---CHHHHHHHHHhccCCHhHCCCCcccCHHHHHc
Confidence               2237889999999999999975     66765

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=1.5e-39  Score=311.82  Aligned_cols=239  Identities=26%  Similarity=0.369  Sum_probs=187.1

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcE--EEEEec-----------------------cCCccccceEEEecCceEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKV--VALKKL-----------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~--vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ++|++.+.||+|+||.||+|... ++..  +|+|.+                       +|+++......+...+..++|
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  104 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA  104 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence            67899999999999999999764 5654  488854                       567777778888889999999


Q ss_pred             EEeccCCceeeeeccCc-------------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcE
Q 042435          197 YEYMERGSLFCVLRDDD-------------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEA  263 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~  263 (412)
                      |||+++|+|.+++....             ....+++..++.++.|++.||+|||++   +|+||||||+||+++.++.+
T Consensus       105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~  181 (327)
T 1fvr_A          105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVA  181 (327)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCE
T ss_pred             EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcCCCeE
Confidence            99999999999987653             123589999999999999999999999   99999999999999999999


Q ss_pred             EEeecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhH
Q 042435          264 FVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLID  342 (412)
Q Consensus       264 kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~  342 (412)
                      ||+|||+++...... ......+++.|+|||++.+..++.++||||||+++|||+| |+.||....        .....+
T Consensus       182 kL~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~--------~~~~~~  252 (327)
T 1fvr_A          182 KIADFGLSRGQEVYV-KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT--------CAELYE  252 (327)
T ss_dssp             EECCTTCEESSCEEC-CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC--------HHHHHH
T ss_pred             EEcccCcCccccccc-cccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCc--------HHHHHH
Confidence            999999987433221 1233457889999999988889999999999999999998 999986321        111222


Q ss_pred             HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCC
Q 042435          343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKK  396 (412)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  396 (412)
                      .+........+...   ...+.+++.+||+.||++|||+.|++++|+++....+
T Consensus       253 ~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~  303 (327)
T 1fvr_A          253 KLPQGYRLEKPLNC---DDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK  303 (327)
T ss_dssp             HGGGTCCCCCCTTB---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred             HhhcCCCCCCCCCC---CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhc
Confidence            22222222111121   2247889999999999999999999999987755443

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=1.3e-39  Score=307.05  Aligned_cols=233  Identities=20%  Similarity=0.267  Sum_probs=183.9

Q ss_pred             hcCcccce-eeeecCceEEEEEEe---CCCcEEEEEec-----------------------cCCccccceEEEecCceEE
Q 042435          142 TEYFHIRY-CIGTGGYDSVYKAEL---PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       142 ~~~f~~~~-~lG~G~~g~Vy~~~~---~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~  194 (412)
                      .++|.+.+ .||+|+||.||+|.+   .+++.||||.+                       +|+++.....++ ..+..+
T Consensus        15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~   93 (291)
T 1xbb_A           15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM   93 (291)
T ss_dssp             GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred             chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence            46788887 999999999999954   34788999965                       456666666666 567789


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      +||||+++++|.+++....   .+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|||+++..
T Consensus        94 lv~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~  167 (291)
T 1xbb_A           94 LVMEMAELGPLNKYLQQNR---HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKAL  167 (291)
T ss_dssp             EEEECCTTEEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred             EEEEeCCCCCHHHHHHhCc---CCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCcceee
Confidence            9999999999999987643   589999999999999999999999   9999999999999999999999999999876


Q ss_pred             CCCCCC---cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCC
Q 042435          275 DVDSSN---RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSP  350 (412)
Q Consensus       275 ~~~~~~---~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (412)
                      ......   .....+++.|+|||.+.+..++.++||||||+++|||+| |+.||....        .......+......
T Consensus       168 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~--------~~~~~~~~~~~~~~  239 (291)
T 1xbb_A          168 RADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK--------GSEVTAMLEKGERM  239 (291)
T ss_dssp             CTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC--------HHHHHHHHHTTCCC
T ss_pred             ccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCC--------HHHHHHHHHcCCCC
Confidence            543322   122346788999999988889999999999999999999 999987321        11122222222222


Q ss_pred             ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       351 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ..+...   ...+.+++.+||+.||++|||+.|+++.|+++-
T Consensus       240 ~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~  278 (291)
T 1xbb_A          240 GCPAGC---PREMYDLMNLCWTYDVENRPGFAAVELRLRNYY  278 (291)
T ss_dssp             CCCTTC---CHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             CCCCCC---CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            222222   224888999999999999999999999998763

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=1.8e-39  Score=304.35  Aligned_cols=226  Identities=22%  Similarity=0.285  Sum_probs=181.2

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      .+++|++.+.||+|+||.||+|... +++.||+|.+                        +|+++......+...+..++
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l   88 (289)
T 1x8b_A            9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI   88 (289)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred             ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence            3577999999999999999999875 7999999964                        57888888888888999999


Q ss_pred             EEEeccCCceeeeeccCcc-cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC---------------
Q 042435          196 IYEYMERGSLFCVLRDDDE-AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS---------------  259 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~-~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~---------------  259 (412)
                      ||||+++|+|.+++..... ...+++..+..++.|++.||+|||++   +|+||||||+||+++.               
T Consensus        89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~  165 (289)
T 1x8b_A           89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDEDD  165 (289)
T ss_dssp             EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC----------------
T ss_pred             EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCccccccccccc
Confidence            9999999999999976432 13589999999999999999999999   9999999999999984               


Q ss_pred             ----CCcEEEeecCCccccCCCCCCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccccCC
Q 042435          260 ----NLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSS  334 (412)
Q Consensus       260 ----~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~  334 (412)
                          ...+||+|||.+.......    ...||+.|+|||.+.+. .++.++||||||+++|||++|..|+...       
T Consensus       166 ~~~~~~~~kl~Dfg~~~~~~~~~----~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~-------  234 (289)
T 1x8b_A          166 WASNKVMFKIGDLGHVTRISSPQ----VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG-------  234 (289)
T ss_dssp             ----CCCEEECCCTTCEETTCSC----CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS-------
T ss_pred             ccCCceEEEEcccccccccCCcc----ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch-------
Confidence                4479999999998654332    23589999999999765 5678999999999999999998775421       


Q ss_pred             CCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          335 GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                         .....+..... +..+....   ..+.+++.+||+.||++|||+.|++++
T Consensus       235 ---~~~~~~~~~~~-~~~~~~~~---~~~~~li~~~l~~dp~~Rps~~~ll~h  280 (289)
T 1x8b_A          235 ---DQWHEIRQGRL-PRIPQVLS---QEFTELLKVMIHPDPERRPSAMALVKH  280 (289)
T ss_dssp             ---HHHHHHHTTCC-CCCSSCCC---HHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred             ---hHHHHHHcCCC-CCCCcccC---HHHHHHHHHHhCCCcccCCCHHHHhhC
Confidence               11122222221 11111111   237889999999999999999999875

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=9.9e-40  Score=316.16  Aligned_cols=227  Identities=22%  Similarity=0.306  Sum_probs=180.8

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      .+.|+..+.||+|+||.||+|.. .+|+.||||++                        +|+++......+...+..++|
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  132 (348)
T 1u5q_A           53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV  132 (348)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence            45688999999999999999976 57999999964                        467777778888889999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||++ |+|.+++....  ..+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++....
T Consensus       133 ~e~~~-g~l~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~  206 (348)
T 1u5q_A          133 MEYCL-GSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP  206 (348)
T ss_dssp             EECCS-EEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS
T ss_pred             EecCC-CCHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecCC
Confidence            99997 68877775432  2589999999999999999999999   999999999999999999999999999986543


Q ss_pred             CCCCccccccccccccccccc---CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccc
Q 042435          277 DSSNRTLQAGTYGYIALELVY---TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN  353 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~---~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (412)
                      .    ....||+.|+|||++.   ...++.++|||||||++|||++|+.||....       .......+..........
T Consensus       207 ~----~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~-------~~~~~~~~~~~~~~~~~~  275 (348)
T 1u5q_A          207 A----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN-------AMSALYHIAQNESPALQS  275 (348)
T ss_dssp             B----CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC-------HHHHHHHHHHSCCCCCCC
T ss_pred             C----CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-------hHHHHHHHHhcCCCCCCC
Confidence            2    2357899999999984   5678999999999999999999999986321       111112222221111111


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      ...   ...+.+++.+||+.||++|||++|++++.
T Consensus       276 ~~~---~~~l~~li~~~l~~dP~~Rps~~~ll~h~  307 (348)
T 1u5q_A          276 GHW---SEYFRNFVDSCLQKIPQDRPTSEVLLKHR  307 (348)
T ss_dssp             TTS---CHHHHHHHHHHTCSSGGGSCCHHHHTTCH
T ss_pred             CCC---CHHHHHHHHHHcccChhhCcCHHHHhhCh
Confidence            111   22377899999999999999999998764

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=1.2e-39  Score=310.38  Aligned_cols=243  Identities=21%  Similarity=0.323  Sum_probs=180.8

Q ss_pred             HHHHHhhcCcccceeeeecCceEEEEEEeC----CCcEEEEEec-----------------------cCCccccceEEEe
Q 042435          136 ENLIDATEYFHIRYCIGTGGYDSVYKAELP----DGKVVALKKL-----------------------HHSETEDSAFVVY  188 (412)
Q Consensus       136 ~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~----~~~~vAvK~l-----------------------~~~~~~~~~~~~~  188 (412)
                      .++....++|.+.+.||+|+||.||+|...    +++.||+|.+                       +|+++.....++.
T Consensus        27 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  106 (313)
T 3brb_A           27 EDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCI  106 (313)
T ss_dssp             TTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEE
T ss_pred             HhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEe
Confidence            444455678999999999999999999763    3458999965                       4666666666665


Q ss_pred             cCc-----eEEEEEEeccCCceeeeeccCc---ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC
Q 042435          189 SPQ-----CMFFIYEYMERGSLFCVLRDDD---EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN  260 (412)
Q Consensus       189 ~~~-----~~~lv~ey~~~gsL~~~l~~~~---~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~  260 (412)
                      ..+     ..++||||+++|+|.+++....   ....+++..++.++.|++.||.|||++   +|+||||||+||+++.+
T Consensus       107 ~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~  183 (313)
T 3brb_A          107 EMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDD  183 (313)
T ss_dssp             C-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTT
T ss_pred             eccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCC
Confidence            544     4599999999999999884321   223589999999999999999999998   99999999999999999


Q ss_pred             CcEEEeecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCc
Q 042435          261 LEAFVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPK  337 (412)
Q Consensus       261 ~~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~  337 (412)
                      +.+||+|||+++.......  ......+++.|+|||.+.+..++.++||||||+++|||++ |..||...       . .
T Consensus       184 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~-------~-~  255 (313)
T 3brb_A          184 MTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGV-------Q-N  255 (313)
T ss_dssp             SCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTC-------C-G
T ss_pred             CcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccC-------C-H
Confidence            9999999999986643321  1233457889999999999999999999999999999999 88888632       1 1


Q ss_pred             chhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          338 IMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ....+.+........+...   ...+.+++.+||+.||++|||+.+++++|+++.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~  307 (313)
T 3brb_A          256 HEMYDYLLHGHRLKQPEDC---LDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLL  307 (313)
T ss_dssp             GGHHHHHHTTCCCCCBTTC---CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCccc---cHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            1122222222222222222   224788999999999999999999999998864

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.1e-39  Score=308.49  Aligned_cols=239  Identities=21%  Similarity=0.256  Sum_probs=180.0

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      .++|++.+.||+|+||.||+|... +++.||+|.+                        +|+++.....++...+..++|
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD  112 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence            478999999999999999999874 6899999965                        466777777778888999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++++|.+++....   .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus       113 ~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  186 (309)
T 2h34_A          113 MRLINGVDLAAMLRRQG---PLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATTD  186 (309)
T ss_dssp             EECCCCEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC------
T ss_pred             EEecCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCccccc
Confidence            99999999999987543   589999999999999999999999   999999999999999999999999999976544


Q ss_pred             CC-CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          277 DS-SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       277 ~~-~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      .. .......||+.|+|||.+.+..++.++||||||+++|||++|+.||.....        ..+...+......+ ...
T Consensus       187 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--------~~~~~~~~~~~~~~-~~~  257 (309)
T 2h34_A          187 EKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQL--------SVMGAHINQAIPRP-STV  257 (309)
T ss_dssp             ----------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHH--------HHHHHHHHSCCCCG-GGT
T ss_pred             cccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchH--------HHHHHHhccCCCCc-ccc
Confidence            32 122345689999999999999999999999999999999999999873211        11112222211111 000


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCC-CHHHHHHHHhcCCCCC
Q 042435          356 IIQDIILVSTIALACLRSKPKSRP-TMQRISQELEGKTPMK  395 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RP-s~~evl~~L~~~~~~~  395 (412)
                      .......+.+++.+||+.||++|| +++++++.|+......
T Consensus       258 ~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~  298 (309)
T 2h34_A          258 RPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATA  298 (309)
T ss_dssp             STTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC--
T ss_pred             CCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhh
Confidence            111122377899999999999999 9999999999886543

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=2.1e-39  Score=305.98  Aligned_cols=228  Identities=21%  Similarity=0.347  Sum_probs=186.9

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      .++|.+.+.||+|+||.||+|... +++.||+|.+                        +|+++......+...+..++|
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   93 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV   93 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence            467899999999999999999875 5889999964                        477777888888889999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++++|.+++....   .+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|||+++....
T Consensus        94 ~e~~~~~~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~  167 (294)
T 2rku_A           94 LELCRRRSLLELHKRRK---ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEY  167 (294)
T ss_dssp             EECCTTCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             EecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceeccc
Confidence            99999999998876533   589999999999999999999999   999999999999999999999999999987654


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .........||+.|+|||.+.+..++.++||||||+++|||++|+.||....       .......+.......  +...
T Consensus       168 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~-------~~~~~~~~~~~~~~~--~~~~  238 (294)
T 2rku_A          168 DGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSC-------LKETYLRIKKNEYSI--PKHI  238 (294)
T ss_dssp             TTCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSS-------HHHHHHHHHTTCCCC--CTTS
T ss_pred             CccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-------HHHHHHHHhhccCCC--cccc
Confidence            4444455679999999999998889999999999999999999999987321       111111222221111  1111


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                         ...+.+++.+||+.||++|||++|++++
T Consensus       239 ---~~~~~~li~~~l~~~p~~Rps~~~ll~~  266 (294)
T 2rku_A          239 ---NPVAASLIQKMLQTDPTARPTINELLND  266 (294)
T ss_dssp             ---CHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             ---CHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence               1237789999999999999999999986

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.3e-40  Score=314.28  Aligned_cols=235  Identities=21%  Similarity=0.317  Sum_probs=169.0

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------------cCCccccceEEE--------ec
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------HHSETEDSAFVV--------YS  189 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~~~~~~~~~~~~--------~~  189 (412)
                      ...+|++.+.||+|+||.||+|.. .+++.||||++                      .|+++......+        ..
T Consensus        26 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~  105 (337)
T 3ll6_A           26 GELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG  105 (337)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred             cCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence            345799999999999999999986 47899999965                      377887776665        34


Q ss_pred             CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCC--cEEeCCCCCCEEecCCCcEEEee
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS--IVHRDISSNNILLNSNLEAFVAD  267 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~--ivHrDlkp~NILl~~~~~~kl~D  267 (412)
                      ....++||||+. |+|.+++........+++..+..++.|++.||+|||++   +  |+||||||+|||++.++.+||+|
T Consensus       106 ~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl~D  181 (337)
T 3ll6_A          106 QAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKLCD  181 (337)
T ss_dssp             SEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEBCC
T ss_pred             CceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEEec
Confidence            456899999995 79988886533333599999999999999999999998   7  99999999999999999999999


Q ss_pred             cCCccccCCCCCC------------cccccccccccccccc---cCcccCcccccHHHHHHHHHHHhCCCCccccccccc
Q 042435          268 FGTVRLLDVDSSN------------RTLQAGTYGYIALELV---YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS  332 (412)
Q Consensus       268 fGla~~~~~~~~~------------~~~~~gt~~y~aPE~~---~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~  332 (412)
                      ||+++........            .....||+.|+|||++   .+..++.++||||||+++|||+||+.||......  
T Consensus       182 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~--  259 (337)
T 3ll6_A          182 FGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL--  259 (337)
T ss_dssp             CTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC--------
T ss_pred             CccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH--
Confidence            9999876543211            1134589999999998   5667899999999999999999999998732110  


Q ss_pred             CCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          333 SSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                               +........+......   ..+.+++.+||+.||++|||+.|++++|+.+..
T Consensus       260 ---------~~~~~~~~~~~~~~~~---~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~  308 (337)
T 3ll6_A          260 ---------RIVNGKYSIPPHDTQY---TVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAA  308 (337)
T ss_dssp             ---------------CCCCTTCCSS---GGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ---------HhhcCcccCCcccccc---hHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence                     1111111111111111   126789999999999999999999999987754

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=9.8e-40  Score=312.10  Aligned_cols=239  Identities=19%  Similarity=0.255  Sum_probs=185.4

Q ss_pred             cccceeeeecCceEEEEEEeC-----CCcEEEEEec----------------------cCCccccceEEEec--CceEEE
Q 042435          145 FHIRYCIGTGGYDSVYKAELP-----DGKVVALKKL----------------------HHSETEDSAFVVYS--PQCMFF  195 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~-----~~~~vAvK~l----------------------~~~~~~~~~~~~~~--~~~~~l  195 (412)
                      |++.+.||+|+||.||++.+.     +++.||||++                      +|+++.....++..  ....++
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l  112 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL  112 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence            488999999999999998653     6889999975                      45666666666655  467899


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||||+++|+|.+++....    +++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus       113 v~e~~~~~~L~~~l~~~~----~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~  185 (318)
T 3lxp_A          113 VMEYVPLGSLRDYLPRHS----IGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVP  185 (318)
T ss_dssp             EECCCTTCBHHHHGGGSC----CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECC
T ss_pred             EEecccCCcHHHHHhhCC----CCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCcccccccc
Confidence            999999999999997653    89999999999999999999999   99999999999999999999999999998765


Q ss_pred             CCCCC---cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccccc----ccCCCC---cchhhHHhh
Q 042435          276 VDSSN---RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSL----SSSSGP---KIMLIDILY  345 (412)
Q Consensus       276 ~~~~~---~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~----~~~~~~---~~~~~~~~~  345 (412)
                      .....   .....+|..|+|||.+.+..++.++||||||+++|||+||+.||......    ......   .....+.+.
T Consensus       186 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (318)
T 3lxp_A          186 EGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLE  265 (318)
T ss_dssp             TTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             ccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHh
Confidence            43321   23346788899999999889999999999999999999999998632110    000000   011122222


Q ss_pred             hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      .....+.+...   ...+.+++.+||+.||++|||+.|+++.|+++.+
T Consensus       266 ~~~~~~~~~~~---~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~  310 (318)
T 3lxp_A          266 RGERLPRPDKC---PAEVYHLMKNCWETEASFRPTFENLIPILKTVHE  310 (318)
T ss_dssp             TTCCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cccCCCCCccc---cHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHH
Confidence            22222222222   2348899999999999999999999999988754

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=1.1e-39  Score=305.27  Aligned_cols=232  Identities=22%  Similarity=0.322  Sum_probs=178.3

Q ss_pred             hcCcccceeeeecCceEEEEEEeCCCcEEEEEec-------------------cCCccccceEEEec-CceEEEEEEecc
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-------------------HHSETEDSAFVVYS-PQCMFFIYEYME  201 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-------------------~~~~~~~~~~~~~~-~~~~~lv~ey~~  201 (412)
                      .++|++.+.||+|+||.||+|.. +|+.||||.+                   +|+++......+.. .+..++||||++
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   98 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMA   98 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCT
T ss_pred             hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecCC
Confidence            46799999999999999999988 5889999965                   45666666665544 347899999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCc
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR  281 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~  281 (412)
                      +|+|.+++..... ..+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|||+++.....   .
T Consensus        99 ~~~L~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~---~  171 (278)
T 1byg_A           99 KGSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST---Q  171 (278)
T ss_dssp             TEEHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC-----------
T ss_pred             CCCHHHHHHhccc-ccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeecccccccccc---c
Confidence            9999999875432 2388999999999999999999999   9999999999999999999999999998754332   2


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ....+++.|+|||.+.+..++.++||||||+++|||+| |+.||...        ........+........+...   .
T Consensus       172 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~--------~~~~~~~~~~~~~~~~~~~~~---~  240 (278)
T 1byg_A          172 DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI--------PLKDVVPRVEKGYKMDAPDGC---P  240 (278)
T ss_dssp             ----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS--------CGGGHHHHHTTTCCCCCCTTC---C
T ss_pred             cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCC--------CHHHHHHHHhcCCCCCCcccC---C
Confidence            23357889999999988889999999999999999998 99998632        111122222222222222222   2


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ..+.+++.+||+.||++|||+.|+++.|+++.
T Consensus       241 ~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~  272 (278)
T 1byg_A          241 PAVYEVMKNCWHLDAAMRPSFLQLREQLEHIK  272 (278)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCChhhCCCHHHHHHHHHHHH
Confidence            24788999999999999999999999998875

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=2.4e-39  Score=305.95  Aligned_cols=236  Identities=23%  Similarity=0.311  Sum_probs=181.1

Q ss_pred             hcCcccceeeeecCceEEEEEEeCC----CcEEEEEec----------------------cCCccccceEEEe-cCceEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPD----GKVVALKKL----------------------HHSETEDSAFVVY-SPQCMF  194 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~----~~~vAvK~l----------------------~~~~~~~~~~~~~-~~~~~~  194 (412)
                      ..+|++.+.||+|+||.||+|...+    ...+|+|.+                      +|+++.....++. ..+..+
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  103 (298)
T 3f66_A           24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL  103 (298)
T ss_dssp             GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred             ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence            3468888999999999999998643    236899964                      5677777777654 456789


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      +||||+++|+|.+++....  ..+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++..
T Consensus       104 ~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~  178 (298)
T 3f66_A          104 VVLPYMKHGDLRNFIRNET--HNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDM  178 (298)
T ss_dssp             EEEECCTTCBHHHHHHCTT--CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGGCCC
T ss_pred             EEEeCCCCCCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECcccccccc
Confidence            9999999999999997643  2489999999999999999999999   9999999999999999999999999999865


Q ss_pred             CCCC----CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhC-CCCcccccccccCCCCcchhhHHhhhccC
Q 042435          275 DVDS----SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMG-THPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       275 ~~~~----~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg-~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      ....    .......+|+.|+|||.+.+..++.++||||||+++|||++| ..||...       ............ ..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~-------~~~~~~~~~~~~-~~  250 (298)
T 3f66_A          179 YDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV-------NTFDITVYLLQG-RR  250 (298)
T ss_dssp             SCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTS-------CTTTHHHHHHTT-CC
T ss_pred             cccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccC-------CHHHHHHHHhcC-CC
Confidence            4322    122344678899999999988999999999999999999995 4555421       111111222221 11


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      ...+....   ..+.+++.+||+.||++|||+.|+++.|+++..
T Consensus       251 ~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~  291 (298)
T 3f66_A          251 LLQPEYCP---DPLYEVMLKCWHPKAEMRPSFSELVSRISAIFS  291 (298)
T ss_dssp             CCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCccCC---HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            11111111   237889999999999999999999999998754

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=3.1e-39  Score=302.82  Aligned_cols=230  Identities=21%  Similarity=0.265  Sum_probs=180.5

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------------cCCccccceEEEecCceEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------------HHSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------------~~~~~~~~~~~~~~~~~~~  194 (412)
                      ++|++.+.||+|+||.||+|... +++.||+|.+                           +|+++......+...+..+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            56999999999999999999875 6899999964                           3566666777788889999


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC----cEEEeecCC
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL----EAFVADFGT  270 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~----~~kl~DfGl  270 (412)
                      +||||+++++|.+++....   .+++..+..++.|++.||+|||+.   +++||||||+||+++.++    .+||+|||+
T Consensus        85 lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~  158 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEKE---SLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFGI  158 (283)
T ss_dssp             EEEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred             EEEeecCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEeccc
Confidence            9999999999999986533   589999999999999999999999   999999999999998776    899999999


Q ss_pred             ccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCC
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP  350 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (412)
                      ++...... ......||+.|+|||++.+..++.++||||||+++|||++|+.||....       .......+.......
T Consensus       159 ~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-------~~~~~~~~~~~~~~~  230 (283)
T 3bhy_A          159 AHKIEAGN-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGET-------KQETLTNISAVNYDF  230 (283)
T ss_dssp             CEECC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSS-------HHHHHHHHHTTCCCC
T ss_pred             ceeccCCC-cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcc-------hHHHHHHhHhcccCC
Confidence            98654332 2234468999999999998899999999999999999999999986321       111111111111111


Q ss_pred             ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       351 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      + ..........+.+++.+||+.||++|||+.|++++
T Consensus       231 ~-~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  266 (283)
T 3bhy_A          231 D-EEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEH  266 (283)
T ss_dssp             C-HHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHC
T ss_pred             c-chhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhC
Confidence            1 11111122347899999999999999999999974

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=2.4e-39  Score=308.69  Aligned_cols=244  Identities=20%  Similarity=0.316  Sum_probs=186.6

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEe----cCceEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVY----SPQCMFF  195 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~----~~~~~~l  195 (412)
                      .++|++.+.||+|+||.||++.. .+++.||||++                     +|+++......+.    .....++
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  107 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL  107 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence            46799999999999999999987 67999999964                     5777777766655    3457899


Q ss_pred             EEEeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          196 IYEYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      ||||+++|+|.+++.... ....+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++..
T Consensus       108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~  184 (317)
T 2buj_A          108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSMNQA  184 (317)
T ss_dssp             EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSCEES
T ss_pred             EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcchhc
Confidence            999999999999887531 123589999999999999999999999   9999999999999999999999999998764


Q ss_pred             CCCCCC---------cccccccccccccccccCcc---cCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhH
Q 042435          275 DVDSSN---------RTLQAGTYGYIALELVYTMV---VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLID  342 (412)
Q Consensus       275 ~~~~~~---------~~~~~gt~~y~aPE~~~~~~---~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~  342 (412)
                      ......         .....||+.|+|||.+.+..   ++.++||||||+++|||++|+.||......     . .....
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-----~-~~~~~  258 (317)
T 2buj_A          185 CIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQK-----G-DSVAL  258 (317)
T ss_dssp             CEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHT-----T-SCHHH
T ss_pred             ccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcc-----c-chhhH
Confidence            321111         12235799999999987543   788999999999999999999998632110     0 11112


Q ss_pred             HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCCC
Q 042435          343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKG  397 (412)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~~  397 (412)
                      ........+.....   ...+.+++.+||+.||++|||+.|++++|+.+.+...+
T Consensus       259 ~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~~  310 (317)
T 2buj_A          259 AVQNQLSIPQSPRH---SSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPG  310 (317)
T ss_dssp             HHHCC--CCCCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCCC
T ss_pred             HhhccCCCCccccC---CHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCCC
Confidence            22222222111111   22488999999999999999999999999999865543

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=3.2e-40  Score=322.30  Aligned_cols=234  Identities=12%  Similarity=0.035  Sum_probs=169.1

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEeccC--------------------------Cccccce-------EEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHH--------------------------SETEDSA-------FVV  187 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~--------------------------~~~~~~~-------~~~  187 (412)
                      ..+|.+.+.||+|+||.||+|... +|+.||||+++.                          +++....       .++
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~  140 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV  140 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence            456999999999999999999864 789999997643                          3322111       111


Q ss_pred             ecC-----------------ceEEEEEEeccCCceeeeeccCcccccCCHHHH------HHHHHHHHHHHHHHHhCCCCC
Q 042435          188 YSP-----------------QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRR------MNIVKSVAHALSYLHHDCTPS  244 (412)
Q Consensus       188 ~~~-----------------~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~------~~i~~~ia~gL~~LH~~~~~~  244 (412)
                      ...                 ...++||||++ |+|.+++.....  .+.+..+      ..++.|++.||+|||++   +
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~--~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~---~  214 (371)
T 3q60_A          141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF--VYVFRGDEGILALHILTAQLIRLAANLQSK---G  214 (371)
T ss_dssp             EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc--ccchhhhhhhhhHHHHHHHHHHHHHHHHHC---C
Confidence            111                 34899999998 899999976432  3566666      78889999999999999   9


Q ss_pred             cEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcccccccccccccccccC--cccCcccccHHHHHHHHHHHhCCC
Q 042435          245 IVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT--MVVTEKCVIYSFGVVALEVLMGTH  322 (412)
Q Consensus       245 ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~s~ksDv~S~Gvil~elltg~~  322 (412)
                      |+||||||+|||++.++.+||+|||+++....   ......+|+.|+|||++.+  ..++.++|||||||++|||+||+.
T Consensus       215 ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~  291 (371)
T 3q60_A          215 LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGT---RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFL  291 (371)
T ss_dssp             EEETTCSGGGEEECTTSCEEECCGGGEEETTC---EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSC
T ss_pred             CccCcCCHHHEEECCCCCEEEEecceeeecCC---CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999986532   1224467799999999987  779999999999999999999999


Q ss_pred             CcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          323 PGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       323 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ||..........................+....   ....+.+++.+||+.||++|||+.|++++
T Consensus       292 Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  353 (371)
T 3q60_A          292 PFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTP---LPDFVKTLIGRFLNFDRRRRLLPLEAMET  353 (371)
T ss_dssp             STTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSC---CCHHHHHHHHHHTCSSTTTCCCHHHHTTS
T ss_pred             CCCCcCcccccchhhhhhhhccccccchhhccC---CCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            997432111111110000000011111111111   12247889999999999999999999753

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.6e-39  Score=335.42  Aligned_cols=233  Identities=20%  Similarity=0.270  Sum_probs=180.4

Q ss_pred             cCcccce-eeeecCceEEEEEEeC---CCcEEEEEec----------------------cCCccccceEEEecCceEEEE
Q 042435          143 EYFHIRY-CIGTGGYDSVYKAELP---DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~-~lG~G~~g~Vy~~~~~---~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      +++.+.+ .||+|+||.||+|.+.   ++..||||.+                      +|+++.....++.. +..++|
T Consensus       335 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv  413 (613)
T 2ozo_A          335 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLV  413 (613)
T ss_dssp             TSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEE
T ss_pred             cceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEE
Confidence            3444444 7999999999999763   5678999975                      45666666676655 569999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++|+|.+++....  ..+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++....
T Consensus       414 ~E~~~~g~L~~~l~~~~--~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~  488 (613)
T 2ozo_A          414 MEMAGGGPLHKFLVGKR--EEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALGA  488 (613)
T ss_dssp             EECCTTCBHHHHHTTCT--TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-
T ss_pred             EEeCCCCcHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCcccccC
Confidence            99999999999987543  2589999999999999999999999   999999999999999999999999999987643


Q ss_pred             CCCC---cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          277 DSSN---RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       277 ~~~~---~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ....   .....+++.|+|||++.+..++.++|||||||++|||+| |+.||...       . .....+.+......+.
T Consensus       489 ~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~-------~-~~~~~~~i~~~~~~~~  560 (613)
T 2ozo_A          489 DDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM-------K-GPEVMAFIEQGKRMEC  560 (613)
T ss_dssp             -------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-------C-SHHHHHHHHTTCCCCC
T ss_pred             CCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC-------C-HHHHHHHHHcCCCCCC
Confidence            3221   122345689999999998899999999999999999998 99998732       1 1122333333222222


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      +...   ...+.+++.+||+.||++||++.++++.|+.+.
T Consensus       561 p~~~---~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~  597 (613)
T 2ozo_A          561 PPEC---PPELYALMSDCWIYKWEDRPDFLTVEQRMRACY  597 (613)
T ss_dssp             CTTC---CHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             CCcC---CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence            2222   234889999999999999999999999998753

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=3e-39  Score=304.56  Aligned_cols=232  Identities=23%  Similarity=0.318  Sum_probs=180.2

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEecc
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      +|....+||+|+||.||+|.. .+++.||+|.+                     +|+++......+...+..++||||++
T Consensus        23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  102 (295)
T 2clq_A           23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP  102 (295)
T ss_dssp             TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence            345556899999999999986 56889999964                     57777777778888899999999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC-CCcEEEeecCCccccCCCCCC
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS-NLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~-~~~~kl~DfGla~~~~~~~~~  280 (412)
                      +++|.+++........+++..+..++.|++.||+|||++   +++||||||+||+++. ++.+||+|||+++........
T Consensus       103 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~  179 (295)
T 2clq_A          103 GGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPC  179 (295)
T ss_dssp             EEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEESCC----
T ss_pred             CCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecccccccCCCCCc
Confidence            999999987654444577899999999999999999999   9999999999999987 899999999999876543333


Q ss_pred             cccccccccccccccccCcc--cCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          281 RTLQAGTYGYIALELVYTMV--VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~--~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      .....||+.|+|||++.+..  ++.++||||||+++|||++|+.||.....      ..............+..+...  
T Consensus       180 ~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~------~~~~~~~~~~~~~~~~~~~~~--  251 (295)
T 2clq_A          180 TETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGE------PQAAMFKVGMFKVHPEIPESM--  251 (295)
T ss_dssp             -CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSS------HHHHHHHHHHHCCCCCCCTTS--
T ss_pred             ccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCc------hhHHHHhhccccccccccccC--
Confidence            34557899999999987643  78999999999999999999999863210      001111111111222222222  


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                       ...+.+++.+||+.||++|||+.|++++
T Consensus       252 -~~~~~~li~~~l~~dp~~Rps~~~ll~~  279 (295)
T 2clq_A          252 -SAEAKAFILKCFEPDPDKRACANDLLVD  279 (295)
T ss_dssp             -CHHHHHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred             -CHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence             2237889999999999999999999864

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=2.2e-39  Score=312.02  Aligned_cols=228  Identities=22%  Similarity=0.359  Sum_probs=187.2

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      .++|.+.+.||+|+||.||++... +++.||+|.+                        +|+++......+.+.+..++|
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  119 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV  119 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            467999999999999999999875 5889999964                        577788888888889999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++++|.+++....   .+++.++..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++....
T Consensus       120 ~e~~~~~~L~~~~~~~~---~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  193 (335)
T 2owb_A          120 LELCRRRSLLELHKRRK---ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEY  193 (335)
T ss_dssp             ECCCTTCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             EecCCCCCHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceeccc
Confidence            99999999998876533   589999999999999999999999   999999999999999999999999999987654


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .........||+.|+|||++.+..++.++||||||+++|||++|+.||....       .......+.......+  ...
T Consensus       194 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-------~~~~~~~~~~~~~~~~--~~~  264 (335)
T 2owb_A          194 DGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSC-------LKETYLRIKKNEYSIP--KHI  264 (335)
T ss_dssp             TTCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSS-------HHHHHHHHHHTCCCCC--TTS
T ss_pred             CcccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCC-------HHHHHHHHhcCCCCCC--ccC
Confidence            4444455679999999999998889999999999999999999999987321       1111112222221111  111


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                         ...+.+++.+||+.||++|||+.|++++
T Consensus       265 ---~~~~~~li~~~l~~dp~~Rps~~ell~~  292 (335)
T 2owb_A          265 ---NPVAASLIQKMLQTDPTARPTINELLND  292 (335)
T ss_dssp             ---CHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             ---CHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence               1237789999999999999999999975

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=2.8e-39  Score=308.07  Aligned_cols=239  Identities=20%  Similarity=0.280  Sum_probs=177.8

Q ss_pred             hcCcccc-eeeeecCceEEEEEEe-CCCcEEEEEec----------------------cCCccccceEEEecCceEEEEE
Q 042435          142 TEYFHIR-YCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       142 ~~~f~~~-~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      .+.|++. +.||+|+||.||+|.. .+++.||||.+                      +|+++......+...+..++||
T Consensus        11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~   90 (316)
T 2ac3_A           11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVF   90 (316)
T ss_dssp             TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence            3567774 7899999999999976 47999999964                      4677777777888889999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCc---EEEeecCCcccc
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLE---AFVADFGTVRLL  274 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~---~kl~DfGla~~~  274 (412)
                      ||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.   +||+|||+++..
T Consensus        91 e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~  164 (316)
T 2ac3_A           91 EKMRGGSILSHIHKRR---HFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGI  164 (316)
T ss_dssp             ECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC--
T ss_pred             EcCCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCcccc
Confidence            9999999999987543   589999999999999999999999   9999999999999987765   999999998765


Q ss_pred             CCCCC-------CcccccccccccccccccC-----cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCC------
Q 042435          275 DVDSS-------NRTLQAGTYGYIALELVYT-----MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGP------  336 (412)
Q Consensus       275 ~~~~~-------~~~~~~gt~~y~aPE~~~~-----~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~------  336 (412)
                      .....       ......||+.|+|||++.+     ..++.++|||||||++|||++|+.||............      
T Consensus       165 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~  244 (316)
T 2ac3_A          165 KLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPA  244 (316)
T ss_dssp             -----------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHH
T ss_pred             ccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchh
Confidence            42211       1123469999999999875     56889999999999999999999999743111000000      


Q ss_pred             -cchh-hHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          337 -KIML-IDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       337 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                       ...+ ..+.......+ ..........+.+++.+||+.||++|||+.|++++
T Consensus       245 ~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  296 (316)
T 2ac3_A          245 CQNMLFESIQEGKYEFP-DKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQH  296 (316)
T ss_dssp             HHHHHHHHHHHCCCCCC-HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HHHHHHHHHhccCcccC-chhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence             0011 11111211111 11111122348899999999999999999999985

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=9.5e-39  Score=320.77  Aligned_cols=236  Identities=21%  Similarity=0.197  Sum_probs=174.1

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecC------c
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSP------Q  191 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~------~  191 (412)
                      .++|++.+.||+|+||.||+|.. .+|+.||||++                       +|+++.....++...      .
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            57899999999999999999976 46899999975                       477777777776543      4


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                      ..++||||+++ +|.+.+..     .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||++
T Consensus       141 ~~~lv~E~~~~-~l~~~~~~-----~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~a  211 (464)
T 3ttj_A          141 DVYLVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLA  211 (464)
T ss_dssp             EEEEEEECCSE-EHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCCC
T ss_pred             eEEEEEeCCCC-CHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEee
Confidence            67999999976 46555542     388999999999999999999999   9999999999999999999999999999


Q ss_pred             cccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCC-------C
Q 042435          272 RLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSG-------P  336 (412)
Q Consensus       272 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~-------~  336 (412)
                      +...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||........        ...       .
T Consensus       212 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~  290 (464)
T 3ttj_A          212 RTAGTSF-MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKL  290 (464)
T ss_dssp             -----CC-CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTS
T ss_pred             eecCCCc-ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHc
Confidence            8764332 23446799999999999999999999999999999999999999963211000        000       0


Q ss_pred             cchhhHHhhh---------------ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          337 KIMLIDILYQ---------------RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       337 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..........               ...+............+.+++.+||+.||++|||++|++++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H  356 (464)
T 3ttj_A          291 QPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  356 (464)
T ss_dssp             CHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             chhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            0000011110               00011111111123458899999999999999999999986

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.7e-39  Score=306.28  Aligned_cols=234  Identities=26%  Similarity=0.354  Sum_probs=181.5

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-------------------cCCccccceEEEecCceEEEEEEe
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ...++|++.+.||+|+||.||+|... +|+.||+|.+                   +|+++......+...+..++||||
T Consensus        26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  105 (314)
T 3com_A           26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEY  105 (314)
T ss_dssp             ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeec
Confidence            34567999999999999999999875 5899999964                   567777778888888999999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +++|+|.+++....  ..+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||++........
T Consensus       106 ~~~~~L~~~~~~~~--~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~  180 (314)
T 3com_A          106 CGAGSVSDIIRLRN--KTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMA  180 (314)
T ss_dssp             CTTEEHHHHHHHHT--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBS
T ss_pred             CCCCCHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhhhhcc
Confidence            99999999886322  2589999999999999999999999   999999999999999999999999999987654443


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQD  359 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (412)
                      ......||+.|+|||.+.+..++.++||||||+++|||++|+.||.....        ............+.. ......
T Consensus       181 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~  251 (314)
T 3com_A          181 KRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHP--------MRAIFMIPTNPPPTF-RKPELW  251 (314)
T ss_dssp             CBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCH--------HHHHHHHHHSCCCCC-SSGGGS
T ss_pred             ccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCCh--------HHHHHHHhcCCCccc-CCcccC
Confidence            44456789999999999998999999999999999999999999873211        001111111111110 001111


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+.+++.+||+.||++|||+.|++++
T Consensus       252 ~~~l~~li~~~l~~dp~~Rpt~~~ll~~  279 (314)
T 3com_A          252 SDNFTDFVKQCLVKSPEQRATATQLLQH  279 (314)
T ss_dssp             CHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            2347899999999999999999999874

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.7e-40  Score=317.67  Aligned_cols=240  Identities=15%  Similarity=0.172  Sum_probs=181.9

Q ss_pred             hcCcccceeeeecCceEEEEEEeCC---------CcEEEEEecc----------------CCcccc--------------
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPD---------GKVVALKKLH----------------HSETED--------------  182 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~---------~~~vAvK~l~----------------~~~~~~--------------  182 (412)
                      .++|++.+.||+|+||.||+|....         ++.||+|.++                |+++..              
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~  120 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIP  120 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETTSTHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCC
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEecccchHHHHHHHHHHhcccchhhhhhhhccCCccCcc
Confidence            3679999999999999999998753         7899999764                333222              


Q ss_pred             -ceEEEe-cCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC
Q 042435          183 -SAFVVY-SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN  260 (412)
Q Consensus       183 -~~~~~~-~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~  260 (412)
                       ....+. ..+..++||||+ +++|.+++..... ..+++..+..++.|++.||+|||++   +|+||||||+||+++.+
T Consensus       121 ~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~-~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIl~~~~  195 (352)
T 2jii_A          121 TCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPK-HVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAENIFVDPE  195 (352)
T ss_dssp             CCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGG-GCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGGGEEEETT
T ss_pred             chhhccccCCcEEEEEecCC-CcCHHHHHHhCCc-CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEEcCC
Confidence             222333 367899999999 9999999986522 3599999999999999999999999   99999999999999998


Q ss_pred             C--cEEEeecCCccccCCCCC-------CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccc
Q 042435          261 L--EAFVADFGTVRLLDVDSS-------NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS  331 (412)
Q Consensus       261 ~--~~kl~DfGla~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~  331 (412)
                      +  .+||+|||+++.......       ......||+.|+|||++.+..++.++||||||+++|||++|+.||....   
T Consensus       196 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~---  272 (352)
T 2jii_A          196 DQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCL---  272 (352)
T ss_dssp             EEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGT---
T ss_pred             CCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCC---
Confidence            8  999999999986643221       1233479999999999999899999999999999999999999997431   


Q ss_pred             cCCCCcchhhHHhh---hccCCccchhh---HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          332 SSSGPKIMLIDILY---QRLSPPINQKI---IQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       332 ~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                         .....+.....   .... ......   ......+.+++.+||+.||++|||++|+++.|+++..
T Consensus       273 ---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~  336 (352)
T 2jii_A          273 ---PNTEDIMKQKQKFVDKPG-PFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQ  336 (352)
T ss_dssp             ---TCHHHHHHHHHHHHHSCC-CEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred             ---cCHHHHHHHHHhccCChh-hhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHH
Confidence               01111111111   1111 000000   0012348889999999999999999999999988754

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=1.8e-39  Score=305.35  Aligned_cols=233  Identities=23%  Similarity=0.293  Sum_probs=172.7

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|++                       +|+++......+...+..++||
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~   85 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM   85 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence            46799999999999999999987 57999999965                       4677777788888899999999


Q ss_pred             EeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          198 EYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      ||++ |+|.+++.... ....+++..+..++.|++.||+|||+++  +++||||||+||+++.++.+||+|||+++....
T Consensus        86 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  162 (290)
T 3fme_A           86 ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLVD  162 (290)
T ss_dssp             ECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEBCCC--------
T ss_pred             ehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecCCcccccc
Confidence            9997 58877765421 1235999999999999999999999842  899999999999999999999999999986644


Q ss_pred             CCCCcccccccccccccccc----cCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          277 DSSNRTLQAGTYGYIALELV----YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~----~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      .. ......||+.|+|||.+    .+..++.++||||||+++|||+||+.||...      ...................
T Consensus       163 ~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~------~~~~~~~~~~~~~~~~~~~  235 (290)
T 3fme_A          163 DV-AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSW------GTPFQQLKQVVEEPSPQLP  235 (290)
T ss_dssp             --------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCC------SCHHHHHHHHHHSCCCCCC
T ss_pred             cc-cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCcccc------CchHHHHHHHhccCCCCcc
Confidence            32 22334789999999996    5667899999999999999999999998631      1111112222222222111


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...   ....+.+++.+||+.||++|||+.|++++
T Consensus       236 ~~~---~~~~~~~li~~~l~~~p~~Rpt~~e~l~h  267 (290)
T 3fme_A          236 ADK---FSAEFVDFTSQCLKKNSKERPTYPELMQH  267 (290)
T ss_dssp             TTT---SCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             ccc---CCHHHHHHHHHHhhcChhhCcCHHHHHhC
Confidence            111   12237889999999999999999999873

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=1.4e-39  Score=312.65  Aligned_cols=234  Identities=19%  Similarity=0.223  Sum_probs=174.1

Q ss_pred             HhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCceEEE
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ...++|++.+.||+|+||.||+|.. .+++.||||++                       +|+++.....++...+..++
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  110 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL  110 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence            4457899999999999999999975 57899999965                       46667777777888999999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe-----cCCCcEEEeecCC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL-----NSNLEAFVADFGT  270 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl-----~~~~~~kl~DfGl  270 (412)
                      ||||++ |+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||+     +.++.+||+|||+
T Consensus       111 v~e~~~-~~L~~~~~~~~---~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~  183 (329)
T 3gbz_A          111 IFEYAE-NDLKKYMDKNP---DVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGL  183 (329)
T ss_dssp             EEECCS-EEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCTTH
T ss_pred             EEecCC-CCHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcCCC
Confidence            999997 59998887654   489999999999999999999999   99999999999999     4556699999999


Q ss_pred             ccccCCCCCCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhh---
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ---  346 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~---  346 (412)
                      ++.............||+.|+|||++.+. .++.++|||||||++|||++|+.||......       .....+...   
T Consensus       184 a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-------~~~~~~~~~~~~  256 (329)
T 3gbz_A          184 ARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEI-------DQLFKIFEVLGL  256 (329)
T ss_dssp             HHHHC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-------HHHHHHHHHHCC
T ss_pred             ccccCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHH-------HHHHHHHHHhCC
Confidence            98765444444556789999999999874 4899999999999999999999998632110       001111000   


Q ss_pred             -----------------c---cCCccchhh--HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          347 -----------------R---LSPPINQKI--IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       347 -----------------~---~~~~~~~~~--~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                                       .   .........  ......+.+++.+||+.||++|||++|++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  319 (329)
T 3gbz_A          257 PDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEH  319 (329)
T ss_dssp             CCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             CchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhCC
Confidence                             0   000000000  0012347899999999999999999999874

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=5.4e-39  Score=319.62  Aligned_cols=176  Identities=20%  Similarity=0.213  Sum_probs=151.9

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc--------------------------CCccccceEEEecCceEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH--------------------------HSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~--------------------------~~~~~~~~~~~~~~~~~~  194 (412)
                      ..+|++.+.||+|+||.||+|.. .+++.||||.++                          |+++......+...+..+
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~  175 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHIC  175 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEE
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEE
Confidence            45799999999999999999976 468999999763                          335666666777889999


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCc--EEEeecCCcc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLE--AFVADFGTVR  272 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~--~kl~DfGla~  272 (412)
                      +||||+. ++|.+++..... ..+++..+..++.|++.||+|||++   +|+||||||+|||++.++.  +||+|||+++
T Consensus       176 lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~  250 (429)
T 3kvw_A          176 MTFELLS-MNLYELIKKNKF-QGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFGSSC  250 (429)
T ss_dssp             EEECCCC-CBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred             EEEeccC-CCHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeecccce
Confidence            9999996 689888876432 2489999999999999999999999   9999999999999998887  9999999997


Q ss_pred             ccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcc
Q 042435          273 LLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGE  325 (412)
Q Consensus       273 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~  325 (412)
                      .....   .....||+.|+|||++.+..++.++|||||||++|||+||+.||.
T Consensus       251 ~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~  300 (429)
T 3kvw_A          251 YEHQR---VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLP  300 (429)
T ss_dssp             ETTCC---CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ecCCc---ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCC
Confidence            64332   234578999999999999999999999999999999999999986

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=3.6e-39  Score=303.28  Aligned_cols=231  Identities=24%  Similarity=0.319  Sum_probs=176.2

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ++|.+.+.||+|+||.||+|.. .+++.||+|.+                      +|+++.....++...+..++||||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  101 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET  101 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence            5689999999999999999977 46899999964                      577777778888889999999999


Q ss_pred             ccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe---cCCCcEEEeecCCccccC
Q 042435          200 MERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL---NSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       200 ~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl---~~~~~~kl~DfGla~~~~  275 (412)
                      +++|+|.+++.... ....+++..+..++.|++.||+|||+.   +|+||||||+||++   +.++.+||+|||+++...
T Consensus       102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~  178 (285)
T 3is5_A          102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFK  178 (285)
T ss_dssp             CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC--
T ss_pred             CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeecceecC
Confidence            99999998886432 123589999999999999999999999   99999999999999   456889999999998654


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ... ......||+.|+|||.+. ..++.++||||||+++|||++|+.||....       .................  .
T Consensus       179 ~~~-~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~-------~~~~~~~~~~~~~~~~~--~  247 (285)
T 3is5_A          179 SDE-HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTS-------LEEVQQKATYKEPNYAV--E  247 (285)
T ss_dssp             ---------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSS-------HHHHHHHHHHCCCCCCC---
T ss_pred             Ccc-cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCC-------HHHHHhhhccCCccccc--c
Confidence            332 233457899999999875 568899999999999999999999987321       00111111111111100  0


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .......+.+++.+||+.||++|||+.|++++
T Consensus       248 ~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h  279 (285)
T 3is5_A          248 CRPLTPQAVDLLKQMLTKDPERRPSAAQVLHH  279 (285)
T ss_dssp             -CCCCHHHHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred             cCcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            00012237789999999999999999999864

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=7.6e-39  Score=323.64  Aligned_cols=230  Identities=22%  Similarity=0.297  Sum_probs=184.4

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEecCceEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      .++|++.+.||+|+||+||+|... +++.||||.+                       +|+++.....++......++||
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  100 (486)
T 3mwu_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (486)
T ss_dssp             HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence            467999999999999999999874 7999999964                       5888888888899999999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec---CCCcEEEeecCCcccc
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN---SNLEAFVADFGTVRLL  274 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~---~~~~~kl~DfGla~~~  274 (412)
                      ||+++|+|.+.+....   .+++..+..++.|++.||+|||++   +|+||||||+|||++   .++.+||+|||+++..
T Consensus       101 e~~~~~~L~~~~~~~~---~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~  174 (486)
T 3mwu_A          101 ELYTGGELFDEIIKRK---RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCF  174 (486)
T ss_dssp             CCCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTB
T ss_pred             EcCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCeEC
Confidence            9999999988886543   589999999999999999999999   999999999999995   4567999999999866


Q ss_pred             CCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          275 DVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       275 ~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      .... ......||+.|+|||++.+ .++.++||||+||++|||++|+.||...       ........+.......+. +
T Consensus       175 ~~~~-~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~-------~~~~~~~~i~~~~~~~~~-~  244 (486)
T 3mwu_A          175 QQNT-KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGK-------NEYDILKRVETGKYAFDL-P  244 (486)
T ss_dssp             CCC-----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHTCCCSCS-G
T ss_pred             CCCC-ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCC-------CHHHHHHHHHhCCCCCCC-c
Confidence            4432 2334579999999999875 5899999999999999999999998632       111112222222222211 1


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ........+.+++.+||+.||++|||+.|++++
T Consensus       245 ~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h  277 (486)
T 3mwu_A          245 QWRTISDDAKDLIRKMLTFHPSLRITATQCLEH  277 (486)
T ss_dssp             GGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred             ccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence            111222347899999999999999999999986

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=9e-39  Score=300.12  Aligned_cols=225  Identities=24%  Similarity=0.327  Sum_probs=183.9

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||+|... +++.||+|.+                        +|+++......+...+..++||
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   93 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML   93 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence            67999999999999999999875 5889999964                        4777777788888889999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++|+|.+++....   .+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|||++......
T Consensus        94 e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~  167 (284)
T 2vgo_A           94 EFAPRGELYKELQKHG---RFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL  167 (284)
T ss_dssp             CCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEECSSS
T ss_pred             EeCCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccCccc
Confidence            9999999999887543   589999999999999999999998   9999999999999999999999999998755432


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                        ......|++.|+|||.+.+..++.++||||||+++|||++|+.||....       .......+.......  +... 
T Consensus       168 --~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-------~~~~~~~~~~~~~~~--~~~~-  235 (284)
T 2vgo_A          168 --RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPS-------HTETHRRIVNVDLKF--PPFL-  235 (284)
T ss_dssp             --CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS-------HHHHHHHHHTTCCCC--CTTS-
T ss_pred             --ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCC-------HhHHHHHHhccccCC--CCcC-
Confidence              2234578999999999999999999999999999999999999987321       111111222222111  1111 


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                        ...+.+++.+||+.||++|||++|++++
T Consensus       236 --~~~~~~li~~~l~~~p~~Rps~~~ll~h  263 (284)
T 2vgo_A          236 --SDGSKDLISKLLRYHPPQRLPLKGVMEH  263 (284)
T ss_dssp             --CHHHHHHHHHHSCSSGGGSCCHHHHHTC
T ss_pred             --CHHHHHHHHHHhhcCHhhCCCHHHHhhC
Confidence              1237889999999999999999999874

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=4.4e-39  Score=305.36  Aligned_cols=230  Identities=20%  Similarity=0.279  Sum_probs=183.8

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEe
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      .++|.+.+.||+|+||.||+|... +|+.||+|.+                     +|+++.....++...+..++||||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   87 (304)
T 2jam_A            8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL   87 (304)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence            467999999999999999999874 7999999965                     466777777778888999999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe---cCCCcEEEeecCCccccCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL---NSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl---~~~~~~kl~DfGla~~~~~  276 (412)
                      +++|+|.+++....   .+++..+..++.|++.||+|||+.   +++||||||+||++   +.++.+||+|||+++....
T Consensus        88 ~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~  161 (304)
T 2jam_A           88 VSGGELFDRILERG---VYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQN  161 (304)
T ss_dssp             CCSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCC
T ss_pred             CCCccHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceecCC
Confidence            99999998886543   589999999999999999999999   99999999999999   7889999999999975432


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .  ......||+.|+|||.+.+..++.++||||||+++|||++|+.||...       ........+.......+. ...
T Consensus       162 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-------~~~~~~~~i~~~~~~~~~-~~~  231 (304)
T 2jam_A          162 G--IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEE-------TESKLFEKIKEGYYEFES-PFW  231 (304)
T ss_dssp             B--TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTS-------CHHHHHHHHHHCCCCCCT-TTT
T ss_pred             C--ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCC-------CHHHHHHHHHcCCCCCCc-ccc
Confidence            2  223456899999999999999999999999999999999999998632       111111122222111110 111


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ......+.+++.+||+.||++|||+.|++++
T Consensus       232 ~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h  262 (304)
T 2jam_A          232 DDISESAKDFICHLLEKDPNERYTCEKALSH  262 (304)
T ss_dssp             TTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             ccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            1112347899999999999999999999975

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=9.8e-39  Score=301.66  Aligned_cols=233  Identities=22%  Similarity=0.260  Sum_probs=185.7

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-------------------------------cCCccccceEEE
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-------------------------------HHSETEDSAFVV  187 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-------------------------------~~~~~~~~~~~~  187 (412)
                      ...++|++.+.||+|+||.||+|... +|+.||||.+                               .|+++......+
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~   93 (298)
T 1phk_A           14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY   93 (298)
T ss_dssp             -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence            34578999999999999999999874 6899999975                               377777778888


Q ss_pred             ecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEee
Q 042435          188 YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVAD  267 (412)
Q Consensus       188 ~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~D  267 (412)
                      ...+..++||||+++++|.+++....   .+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|
T Consensus        94 ~~~~~~~lv~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~d  167 (298)
T 1phk_A           94 ETNTFFFLVFDLMKKGELFDYLTEKV---TLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTD  167 (298)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECC
T ss_pred             ccCCeEEEEEeccCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEec
Confidence            88899999999999999999987543   589999999999999999999999   999999999999999999999999


Q ss_pred             cCCccccCCCCCCccccccccccccccccc------CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhh
Q 042435          268 FGTVRLLDVDSSNRTLQAGTYGYIALELVY------TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLI  341 (412)
Q Consensus       268 fGla~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~  341 (412)
                      ||++....... ......||+.|+|||++.      ...++.++||||||+++|||++|+.||....       ......
T Consensus       168 fg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~-------~~~~~~  239 (298)
T 1phk_A          168 FGFSCQLDPGE-KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK-------QMLMLR  239 (298)
T ss_dssp             CTTCEECCTTC-CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS-------HHHHHH
T ss_pred             ccchhhcCCCc-ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCcc-------HHHHHH
Confidence            99998765432 233457899999999885      4568899999999999999999999986321       111112


Q ss_pred             HHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          342 DILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .+.......+. .........+.+++.+||+.||++|||+.|++++
T Consensus       240 ~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  284 (298)
T 1phk_A          240 MIMSGNYQFGS-PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH  284 (298)
T ss_dssp             HHHHTCCCCCT-TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             HHhcCCcccCc-ccccccCHHHHHHHHHHccCCcccCCCHHHHHhC
Confidence            22222222111 1111222348899999999999999999999864

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.8e-39  Score=311.70  Aligned_cols=237  Identities=21%  Similarity=0.234  Sum_probs=179.4

Q ss_pred             HHhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEecc--------------------------CCccccceEEEecCc
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH--------------------------HSETEDSAFVVYSPQ  191 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~--------------------------~~~~~~~~~~~~~~~  191 (412)
                      ....++|++.+.||+|+||.||+|... +|+.||||.++                          |+++......+...+
T Consensus         6 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   85 (346)
T 1ua2_A            6 KSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS   85 (346)
T ss_dssp             -------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred             HHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCC
Confidence            344578999999999999999999875 58999999753                          566666667788888


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                      ..++||||+++ +|.+++....  ..+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||++
T Consensus        86 ~~~lv~e~~~~-~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a  159 (346)
T 1ua2_A           86 NISLVFDFMET-DLEVIIKDNS--LVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLA  159 (346)
T ss_dssp             CCEEEEECCSE-EHHHHHTTCC--SSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGG
T ss_pred             ceEEEEEcCCC-CHHHHHHhcC--cCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEecccc
Confidence            99999999975 8888776543  2488899999999999999999999   9999999999999999999999999999


Q ss_pred             cccCCCCCCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhc---
Q 042435          272 RLLDVDSSNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQR---  347 (412)
Q Consensus       272 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~---  347 (412)
                      +.............||+.|+|||++.+. .++.++|||||||++|||++|..||.....       ...+..+....   
T Consensus       160 ~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~-------~~~~~~i~~~~~~~  232 (346)
T 1ua2_A          160 KSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSD-------LDQLTRIFETLGTP  232 (346)
T ss_dssp             STTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH-------HHHHHHHHHHHCCC
T ss_pred             eeccCCcccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCH-------HHHHHHHHHHcCCC
Confidence            8765544444556789999999998754 588999999999999999999999863211       00011111100   


Q ss_pred             ------------------cCCccc--hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          348 ------------------LSPPIN--QKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       348 ------------------~~~~~~--~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                                        ..+..+  .........+.+++.+||+.||++|||+.|++++-
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~  293 (346)
T 1ua2_A          233 TEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMK  293 (346)
T ss_dssp             CTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSG
T ss_pred             ChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcCh
Confidence                              000000  00011123488999999999999999999999874

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=5.5e-39  Score=309.44  Aligned_cols=238  Identities=21%  Similarity=0.276  Sum_probs=160.8

Q ss_pred             hhcCcccc-eeeeecCceEEEEEEeC-CCcEEEEEec-----------------cCCccccceEEEec----CceEEEEE
Q 042435          141 ATEYFHIR-YCIGTGGYDSVYKAELP-DGKVVALKKL-----------------HHSETEDSAFVVYS----PQCMFFIY  197 (412)
Q Consensus       141 ~~~~f~~~-~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------~~~~~~~~~~~~~~----~~~~~lv~  197 (412)
                      ..++|.+. ++||+|+||.||+|... +|+.||||.+                 .|+++.....++..    ....++||
T Consensus        26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~  105 (336)
T 3fhr_A           26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLIIM  105 (336)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEEEE
Confidence            45678885 46999999999999875 6999999976                 45666666665544    45689999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC---CCcEEEeecCCcccc
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS---NLEAFVADFGTVRLL  274 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~---~~~~kl~DfGla~~~  274 (412)
                      ||+++|+|.+++..... ..+++.++..++.|++.||+|||++   +|+||||||+||+++.   ++.+||+|||+++..
T Consensus       106 e~~~gg~L~~~l~~~~~-~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~  181 (336)
T 3fhr_A          106 ECMEGGELFSRIQERGD-QAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKET  181 (336)
T ss_dssp             ECCTTEEHHHHHHTC-C-CCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC
T ss_pred             eccCCCCHHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEeccccceec
Confidence            99999999999976532 2589999999999999999999999   9999999999999976   455999999999865


Q ss_pred             CCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          275 DVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       275 ~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      ...  ......||+.|+|||++.+..++.++||||||+++|||++|+.||..........   .............+. .
T Consensus       182 ~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~---~~~~~~~~~~~~~~~-~  255 (336)
T 3fhr_A          182 TQN--ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISP---GMKRRIRLGQYGFPN-P  255 (336)
T ss_dssp             ------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC------------------------CCCT-T
T ss_pred             ccc--ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhh---hHHHhhhccccccCc-h
Confidence            432  2234568999999999988899999999999999999999999986332110000   000001111111100 0


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      ........+.+++.+||+.||++|||+.|++++-
T Consensus       256 ~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp  289 (336)
T 3fhr_A          256 EWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHP  289 (336)
T ss_dssp             TSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSH
T ss_pred             hhccCCHHHHHHHHHHCCCChhHCcCHHHHhcCc
Confidence            0011223478899999999999999999999853

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=7.3e-39  Score=306.40  Aligned_cols=231  Identities=23%  Similarity=0.260  Sum_probs=177.2

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEecc-----------------------------CCccccceEEEecCc
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLH-----------------------------HSETEDSAFVVYSPQ  191 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~-----------------------------~~~~~~~~~~~~~~~  191 (412)
                      .++|.+.+.||+|+||.||+|... +++.||||.++                             |+++.....++.. +
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~   87 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-E   87 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES-S
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC-C
Confidence            467999999999999999999774 68999999753                             4555555555544 4


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCc---EEEeec
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLE---AFVADF  268 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~---~kl~Df  268 (412)
                      ..++||||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.   +||+||
T Consensus        88 ~~~lv~e~~~~~~L~~~~~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Df  161 (322)
T 2ycf_A           88 DYYIVLELMEGGELFDKVVGNK---RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDF  161 (322)
T ss_dssp             SEEEEEECCTTEETHHHHSTTC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEECCC
T ss_pred             ceEEEEecCCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEccC
Confidence            4899999999999998887543   589999999999999999999999   9999999999999986654   999999


Q ss_pred             CCccccCCCCCCccccccccccccccccc---CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhh
Q 042435          269 GTVRLLDVDSSNRTLQAGTYGYIALELVY---TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY  345 (412)
Q Consensus       269 Gla~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~  345 (412)
                      |+++...... ......||+.|+|||++.   ...++.++||||||+++|||++|+.||...       .......+.+.
T Consensus       162 g~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-------~~~~~~~~~~~  233 (322)
T 2ycf_A          162 GHSKILGETS-LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH-------RTQVSLKDQIT  233 (322)
T ss_dssp             TTCEECCCCH-HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCST-------TCSSCHHHHHH
T ss_pred             ccceeccccc-ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCccc-------chHHHHHHHHH
Confidence            9998654321 123456899999999974   567889999999999999999999998732       11112222222


Q ss_pred             hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .......+.........+.+++.+||+.||++|||+.|++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h  275 (322)
T 2ycf_A          234 SGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH  275 (322)
T ss_dssp             HTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hCccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhhC
Confidence            221111111111223348899999999999999999999864

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=1.2e-39  Score=313.16  Aligned_cols=239  Identities=20%  Similarity=0.286  Sum_probs=177.9

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEecCceEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      .++|++.+.||+|+||.||+|... +|+.||+|++                       +|+++.....++...+..++||
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  103 (331)
T 4aaa_A           24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF  103 (331)
T ss_dssp             GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence            367999999999999999999875 5899999964                       5777888888888899999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++++|.+++....   .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus       104 e~~~~~~l~~~~~~~~---~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  177 (331)
T 4aaa_A          104 EFVDHTILDDLELFPN---GLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP  177 (331)
T ss_dssp             ECCSEEHHHHHHHSTT---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred             ecCCcchHHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeecCC
Confidence            9999998888765443   489999999999999999999999   9999999999999999999999999999876554


Q ss_pred             CCCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcchhhHHhhh--
Q 042435          278 SSNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKIMLIDILYQ--  346 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~~~~~~~~~--  346 (412)
                      ........||+.|+|||++.+. .++.++||||||+++|||++|+.||........        .... .........  
T Consensus       178 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  256 (331)
T 4aaa_A          178 GEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLI-PRHQELFNKNP  256 (331)
T ss_dssp             ------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCC-HHHHHHHHHCG
T ss_pred             ccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCC-hhhhhHhhhcc
Confidence            4444556789999999998775 789999999999999999999999863211000        0000 000000000  


Q ss_pred             --------ccCC--ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          347 --------RLSP--PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       347 --------~~~~--~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                              ....  +...........+.+++.+||+.||++|||+.|++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h  307 (331)
T 4aaa_A          257 VFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH  307 (331)
T ss_dssp             GGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred             ccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence                    0000  0000001122348899999999999999999999875

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=2.4e-39  Score=310.44  Aligned_cols=239  Identities=23%  Similarity=0.309  Sum_probs=185.6

Q ss_pred             hcCcccceeeeecCceEEEEEEe------CCCcEEEEEec----------------------cCCccccceEEEecCceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL------PDGKVVALKKL----------------------HHSETEDSAFVVYSPQCM  193 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~------~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~  193 (412)
                      .++|++.+.||+|+||.||+|.+      .+++.||||.+                      +|+++......+...+..
T Consensus        29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  108 (327)
T 2yfx_A           29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  108 (327)
T ss_dssp             GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence            46899999999999999999974      35779999975                      577788888888888899


Q ss_pred             EEEEEeccCCceeeeeccCcc----cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC---CCcEEEe
Q 042435          194 FFIYEYMERGSLFCVLRDDDE----AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS---NLEAFVA  266 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~---~~~~kl~  266 (412)
                      ++||||+++|+|.+++.....    ...+++..++.++.|++.||+|||++   +|+||||||+||+++.   +..+||+
T Consensus       109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~~kl~  185 (327)
T 2yfx_A          109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIG  185 (327)
T ss_dssp             EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred             EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcceEEEC
Confidence            999999999999999976531    13489999999999999999999999   9999999999999984   4569999


Q ss_pred             ecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHH
Q 042435          267 DFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDI  343 (412)
Q Consensus       267 DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~  343 (412)
                      |||+++.......  ......||+.|+|||.+.+..++.++||||||+++|||+| |+.||...        ......+.
T Consensus       186 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~--------~~~~~~~~  257 (327)
T 2yfx_A          186 DFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK--------SNQEVLEF  257 (327)
T ss_dssp             CCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--------CHHHHHHH
T ss_pred             ccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCc--------CHHHHHHH
Confidence            9999875533221  2234467899999999988899999999999999999998 99998632        11112222


Q ss_pred             hhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          344 LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                      +........+...   ...+.+++.+||+.||++|||+.|++++|+.+...
T Consensus       258 ~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~  305 (327)
T 2yfx_A          258 VTSGGRMDPPKNC---PGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD  305 (327)
T ss_dssp             HHTTCCCCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HhcCCCCCCCCCC---CHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence            2222121111222   22378899999999999999999999999877543

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=1.2e-38  Score=297.79  Aligned_cols=226  Identities=24%  Similarity=0.365  Sum_probs=175.8

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|.+.+.||+|+||.||+|... +|+.||||.+                        +|+++......+...+..++||
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   90 (276)
T 2h6d_A           11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM   90 (276)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence            57999999999999999999875 7999999964                        4677777788888899999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++++|.+++....   .+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|||++......
T Consensus        91 e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~  164 (276)
T 2h6d_A           91 EYVSGGELFDYICKHG---RVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG  164 (276)
T ss_dssp             ECCCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-
T ss_pred             eccCCCcHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccCCC
Confidence            9999999999987543   589999999999999999999999   9999999999999999999999999999865433


Q ss_pred             CCCcccccccccccccccccCccc-CcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVV-TEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~-s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      . ......||+.|+|||.+.+..+ +.++||||||+++|||++|+.||....        .....+.+...... .+...
T Consensus       165 ~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~--------~~~~~~~~~~~~~~-~~~~~  234 (276)
T 2h6d_A          165 E-FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH--------VPTLFKKIRGGVFY-IPEYL  234 (276)
T ss_dssp             -------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSS--------HHHHHHHHHHCCCC-CCTTS
T ss_pred             c-ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCc--------HHHHHHHhhcCccc-Cchhc
Confidence            2 2234468999999999987765 689999999999999999999986321        11112222221111 11111


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                         ...+.+++.+||+.||++|||+.|++++
T Consensus       235 ---~~~l~~li~~~l~~~p~~Rps~~~~l~h  262 (276)
T 2h6d_A          235 ---NRSVATLLMHMLQVDPLKRATIKDIREH  262 (276)
T ss_dssp             ---CHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             ---CHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence               1237789999999999999999999986

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=3.5e-39  Score=325.91  Aligned_cols=230  Identities=20%  Similarity=0.289  Sum_probs=186.1

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      .++|++.+.||+|+||.||+|... +|+.||||.+                        +|+++.....++...+..++|
T Consensus        25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  104 (484)
T 3nyv_A           25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV  104 (484)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            457999999999999999999875 7999999964                        577777888888889999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe---cCCCcEEEeecCCccc
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL---NSNLEAFVADFGTVRL  273 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl---~~~~~~kl~DfGla~~  273 (412)
                      |||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||+   +.++.+||+|||+++.
T Consensus       105 ~e~~~~~~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~  178 (484)
T 3nyv_A          105 GEVYTGGELFDEIISRK---RFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTH  178 (484)
T ss_dssp             ECCCCSCBHHHHHHTCS---CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHH
T ss_pred             EecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEE
Confidence            99999999998887654   589999999999999999999999   99999999999999   5678999999999987


Q ss_pred             cCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccc
Q 042435          274 LDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN  353 (412)
Q Consensus       274 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (412)
                      ..... ......||+.|+|||++.+ .++.++||||+||++|||++|+.||...       ........+.......+. 
T Consensus       179 ~~~~~-~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~-------~~~~~~~~i~~~~~~~~~-  248 (484)
T 3nyv_A          179 FEASK-KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGA-------NEYDILKKVEKGKYTFEL-  248 (484)
T ss_dssp             BCCCC-SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHCCCCCCS-
T ss_pred             ccccc-ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCC-------CHHHHHHHHHcCCCCCCC-
Confidence            65433 3344579999999999866 6899999999999999999999998732       111122222222222221 


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      +........+.+++.+||+.||++|||+.|++++
T Consensus       249 ~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h  282 (484)
T 3nyv_A          249 PQWKKVSESAKDLIRKMLTYVPSMRISARDALDH  282 (484)
T ss_dssp             GGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             cccccCCHHHHHHHHHHCCCChhHCcCHHHHhhC
Confidence            1111223347899999999999999999999875

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=1.7e-38  Score=304.55  Aligned_cols=235  Identities=15%  Similarity=0.163  Sum_probs=178.3

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-------------------CCccccceEEEec--CceEEEEEEec
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-------------------HSETEDSAFVVYS--PQCMFFIYEYM  200 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-------------------~~~~~~~~~~~~~--~~~~~lv~ey~  200 (412)
                      ++|++.+.||+|+||.||+|.. .+++.||||.++                   |+++.....++..  ....++||||+
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~  115 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHV  115 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEEECC
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEEecc
Confidence            6799999999999999999976 579999999763                   7777777777776  66789999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC-cEEEeecCCccccCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL-EAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~-~~kl~DfGla~~~~~~~~  279 (412)
                      ++++|.+++.      .+++..+..++.|++.||+|||++   +|+||||||+|||++.++ .+||+|||+++.......
T Consensus       116 ~~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~  186 (330)
T 3nsz_A          116 NNTDFKQLYQ------TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE  186 (330)
T ss_dssp             CCCCHHHHGG------GCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCC
T ss_pred             CchhHHHHHH------hCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCc
Confidence            9999988874      388899999999999999999999   999999999999999766 899999999987654332


Q ss_pred             CcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccc--------------------c-CCCCc
Q 042435          280 NRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS--------------------S-SSGPK  337 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~--------------------~-~~~~~  337 (412)
                       .....||..|+|||.+.+ ..++.++|||||||++|||++|+.||.......                    . .....
T Consensus       187 -~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  265 (330)
T 3nsz_A          187 -YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELD  265 (330)
T ss_dssp             -CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCC
T ss_pred             -cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccc
Confidence             334578999999999877 678999999999999999999999984211000                    0 00000


Q ss_pred             chhhHHhhhccCCcc-----chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          338 IMLIDILYQRLSPPI-----NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       338 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+..........     ..........+.+++.+||+.||++|||++|++++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~h  320 (330)
T 3nsz_A          266 PRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH  320 (330)
T ss_dssp             THHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             cchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence            000000000000000     00000012348899999999999999999999975

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=3e-39  Score=303.98  Aligned_cols=236  Identities=24%  Similarity=0.323  Sum_probs=177.5

Q ss_pred             hcCcccceeeeecCceEEEEEEeC--CCc--EEEEEec------------------------cCCccccceEEEecCceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP--DGK--VVALKKL------------------------HHSETEDSAFVVYSPQCM  193 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~--~~~--~vAvK~l------------------------~~~~~~~~~~~~~~~~~~  193 (412)
                      .++|++.+.||+|+||.||+|.+.  +++  .||+|.+                        +|+++......+... ..
T Consensus        17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-~~   95 (291)
T 1u46_A           17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP-PM   95 (291)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-SC
T ss_pred             hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccC-Cc
Confidence            357999999999999999999763  333  6899965                        356666666666554 48


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ++|+||+++|+|.+++....  ..+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|||+++.
T Consensus        96 ~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~  170 (291)
T 1u46_A           96 KMVTELAPLGSLLDRLRKHQ--GHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRA  170 (291)
T ss_dssp             EEEEECCTTCBHHHHHHHHG--GGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred             eeeEecccCCCHHHHHHhcc--CCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEcccccccc
Confidence            99999999999999887543  2589999999999999999999999   999999999999999999999999999987


Q ss_pred             cCCCCCC---cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          274 LDVDSSN---RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       274 ~~~~~~~---~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      .......   .....+|..|+|||.+.+..++.++||||||+++|||++ |+.||...       ........+......
T Consensus       171 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-------~~~~~~~~~~~~~~~  243 (291)
T 1u46_A          171 LPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL-------NGSQILHKIDKEGER  243 (291)
T ss_dssp             CCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC-------CHHHHHHHHHTSCCC
T ss_pred             ccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccC-------CHHHHHHHHHccCCC
Confidence            6543322   123457889999999988889999999999999999999 99998632       111111222222222


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      .+.....   ...+.+++.+||+.||++|||+.++++.|+++.+
T Consensus       244 ~~~~~~~---~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~  284 (291)
T 1u46_A          244 LPRPEDC---PQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQP  284 (291)
T ss_dssp             CCCCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-
T ss_pred             CCCCcCc---CHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCc
Confidence            2211222   2348889999999999999999999999998875

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=8.9e-39  Score=323.76  Aligned_cols=230  Identities=22%  Similarity=0.276  Sum_probs=181.0

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEecCceEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      .+.|++.+.||+|+||.||+|... +++.||+|.+                       +|+++.....++......++||
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  115 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM  115 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            457999999999999999999875 6899999964                       5788888888899999999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC---CCcEEEeecCCcccc
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS---NLEAFVADFGTVRLL  274 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~---~~~~kl~DfGla~~~  274 (412)
                      ||+++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.   ++.+||+|||+++..
T Consensus       116 e~~~~g~L~~~~~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~  189 (494)
T 3lij_A          116 ECYKGGELFDEIIHRM---KFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAVF  189 (494)
T ss_dssp             ECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC
T ss_pred             ecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCeEC
Confidence            9999999988876543   589999999999999999999999   9999999999999975   455999999999876


Q ss_pred             CCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          275 DVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       275 ~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      .... ......||+.|+|||++. ..++.++||||+||++|||++|+.||...       ........+.......+. .
T Consensus       190 ~~~~-~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~-------~~~~~~~~i~~~~~~~~~-~  259 (494)
T 3lij_A          190 ENQK-KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQ-------TDQEILRKVEKGKYTFDS-P  259 (494)
T ss_dssp             BTTB-CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHTCCCCCS-G
T ss_pred             CCCc-cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCC-------CHHHHHHHHHhCCCCCCc-h
Confidence            5432 233457999999999886 56899999999999999999999998732       111112222222222111 1


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ........+.+++.+||+.||++|||+.|++++
T Consensus       260 ~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h  292 (494)
T 3lij_A          260 EWKNVSEGAKDLIKQMLQFDSQRRISAQQALEH  292 (494)
T ss_dssp             GGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred             hcccCCHHHHHHHHHHCCCChhhCccHHHHhcC
Confidence            111222347899999999999999999999865

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=1.5e-39  Score=318.25  Aligned_cols=224  Identities=17%  Similarity=0.131  Sum_probs=169.1

Q ss_pred             HhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc---------------------------CCccccce-------
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH---------------------------HSETEDSA-------  184 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~---------------------------~~~~~~~~-------  184 (412)
                      ...++|++.+.||+|+||.||+|.. .+|+.||||.++                           |+++....       
T Consensus        70 ~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~  149 (377)
T 3byv_A           70 ERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPF  149 (377)
T ss_dssp             CCCEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCS
T ss_pred             CCCceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhh
Confidence            3457899999999999999999986 569999999864                           22222221       


Q ss_pred             EEEecCc-----------------eEEEEEEeccCCceeeeeccCcc----cccCCHHHHHHHHHHHHHHHHHHHhCCCC
Q 042435          185 FVVYSPQ-----------------CMFFIYEYMERGSLFCVLRDDDE----AIELNWTRRMNIVKSVAHALSYLHHDCTP  243 (412)
Q Consensus       185 ~~~~~~~-----------------~~~lv~ey~~~gsL~~~l~~~~~----~~~l~~~~~~~i~~~ia~gL~~LH~~~~~  243 (412)
                      .++...+                 ..++||||+ +|+|.+++.....    ...++|..++.++.|++.||+|||++   
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---  225 (377)
T 3byv_A          150 DLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---  225 (377)
T ss_dssp             EEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred             hhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---
Confidence            2222222                 378999999 6899999875421    12345688999999999999999999   


Q ss_pred             CcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcccccccccccccccccCc-----------ccCcccccHHHHH
Q 042435          244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM-----------VVTEKCVIYSFGV  312 (412)
Q Consensus       244 ~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~s~ksDv~S~Gv  312 (412)
                      +|+||||||+|||++.++.+||+|||+++....   ......| +.|+|||++.+.           .++.++|||||||
T Consensus       226 ~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~---~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~  301 (377)
T 3byv_A          226 GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA---RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGL  301 (377)
T ss_dssp             TEECSCCCGGGEEECTTCCEEECCGGGCEETTC---EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHH
T ss_pred             CeecCCCCHHHEEEcCCCCEEEEechhheecCC---cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHH
Confidence            999999999999999999999999999985322   2334567 999999999887           8999999999999


Q ss_pred             HHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          313 VALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       313 il~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ++|||+||+.||......       .....+. ... ...       ...+.+++.+||+.||++|||+.|++++
T Consensus       302 il~elltg~~Pf~~~~~~-------~~~~~~~-~~~-~~~-------~~~~~~li~~~L~~dp~~Rpt~~e~l~h  360 (377)
T 3byv_A          302 VIYWIWCADLPITKDAAL-------GGSEWIF-RSC-KNI-------PQPVRALLEGFLRYPKEDRLLPLQAMET  360 (377)
T ss_dssp             HHHHHHHSSCCC-------------CCSGGGG-SSC-CCC-------CHHHHHHHHHHTCSSGGGCCCHHHHHTS
T ss_pred             HHHHHHHCCCCCcccccc-------cchhhhh-hhc-cCC-------CHHHHHHHHHHcCCCchhCCCHHHHhhC
Confidence            999999999998632110       1111111 111 111       1237789999999999999999999863

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=1.6e-38  Score=299.39  Aligned_cols=226  Identities=21%  Similarity=0.293  Sum_probs=175.9

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEec----CceEEE
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYS----PQCMFF  195 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~----~~~~~l  195 (412)
                      .|.+.+.||+|+||.||+|.. .++..||+|.+                       +|+++......+..    ....++
T Consensus        27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  106 (290)
T 1t4h_A           27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL  106 (290)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence            477888999999999999976 46889999964                       46677666655433    466899


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCC--cEEeCCCCCCEEec-CCCcEEEeecCCcc
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS--IVHRDISSNNILLN-SNLEAFVADFGTVR  272 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~--ivHrDlkp~NILl~-~~~~~kl~DfGla~  272 (412)
                      ||||+++|+|.+++....   .+++..+..++.|++.||+|||+.   +  ++||||||+||+++ .++.+||+|||++.
T Consensus       107 v~e~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~  180 (290)
T 1t4h_A          107 VTELMTSGTLKTYLKRFK---VMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT  180 (290)
T ss_dssp             EEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred             EEEecCCCCHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCCcc
Confidence            999999999999987543   589999999999999999999998   6  99999999999997 78999999999997


Q ss_pred             ccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          273 LLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       273 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      .....  ......||+.|+|||.+. ..++.++||||||+++|||++|+.||...       ...............+..
T Consensus       181 ~~~~~--~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~-------~~~~~~~~~~~~~~~~~~  250 (290)
T 1t4h_A          181 LKRAS--FAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSEC-------QNAAQIYRRVTSGVKPAS  250 (290)
T ss_dssp             GCCTT--SBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTC-------SSHHHHHHHHTTTCCCGG
T ss_pred             ccccc--ccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCc-------CcHHHHHHHHhccCCccc
Confidence            54332  233457899999999876 45899999999999999999999998632       111111222222211111


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                        ........+.+++.+||+.||++|||+.|++++
T Consensus       251 --~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h  283 (290)
T 1t4h_A          251 --FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH  283 (290)
T ss_dssp             --GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             --cCCCCCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence              111112348899999999999999999999875

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=1.6e-38  Score=322.72  Aligned_cols=231  Identities=23%  Similarity=0.282  Sum_probs=182.9

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------------------cCCccccceE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------------------HHSETEDSAF  185 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------------------~~~~~~~~~~  185 (412)
                      ..++|.+.+.||+|+||+||+|... +++.||+|.+                                  +|+++.....
T Consensus        34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~  113 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD  113 (504)
T ss_dssp             GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            4578999999999999999999874 6889999965                                  3677777777


Q ss_pred             EEecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC---c
Q 042435          186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL---E  262 (412)
Q Consensus       186 ~~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~---~  262 (412)
                      ++......++||||+++|+|.+++....   .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++   .
T Consensus       114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~  187 (504)
T 3q5i_A          114 VFEDKKYFYLVTEFYEGGELFEQIINRH---KFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLN  187 (504)
T ss_dssp             EEECSSEEEEEEECCTTCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCCSS
T ss_pred             EEEcCCEEEEEEecCCCCcHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCCcc
Confidence            8888999999999999999998886543   589999999999999999999999   999999999999998765   6


Q ss_pred             EEEeecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhH
Q 042435          263 AFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLID  342 (412)
Q Consensus       263 ~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~  342 (412)
                      +||+|||+++...... ......||+.|+|||++. ..++.++||||+||++|||++|..||...       ........
T Consensus       188 ~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~-------~~~~~~~~  258 (504)
T 3q5i_A          188 IKIVDFGLSSFFSKDY-KLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQ-------NDQDIIKK  258 (504)
T ss_dssp             EEECCCTTCEECCTTS-CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHH
T ss_pred             EEEEECCCCEEcCCCC-ccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCC-------CHHHHHHH
Confidence            9999999998765432 234457999999999986 46899999999999999999999998732       11112222


Q ss_pred             HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      +.......+. .........+.+++.+||+.||++|||++|++++
T Consensus       259 i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h  302 (504)
T 3q5i_A          259 VEKGKYYFDF-NDWKNISDEAKELIKLMLTYDYNKRCTAEEALNS  302 (504)
T ss_dssp             HHHCCCCCCH-HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HHcCCCCCCc-cccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence            2222222111 1111223348899999999999999999999875

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=8.6e-39  Score=304.99  Aligned_cols=243  Identities=21%  Similarity=0.324  Sum_probs=181.2

Q ss_pred             HHHHHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEec-----------------------cCCccccceEEEecCce
Q 042435          136 ENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-----------------------HHSETEDSAFVVYSPQC  192 (412)
Q Consensus       136 ~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~  192 (412)
                      ++..-..++|++.+.||+|+||.||+|...+  .+|+|.+                       +|+++......+...+.
T Consensus        26 ~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  103 (319)
T 2y4i_B           26 QEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPH  103 (319)
T ss_dssp             GGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSC
T ss_pred             ccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCc
Confidence            3444456789999999999999999998854  4888865                       35566666677888889


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .++||||+++++|.+++....  ..+++..+..++.|++.||+|||++   +++||||||+||+++ ++.+||+|||+++
T Consensus       104 ~~iv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~  177 (319)
T 2y4i_B          104 LAIITSLCKGRTLYSVVRDAK--IVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFS  177 (319)
T ss_dssp             EEEECBCCCSEEHHHHTTSSC--CCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC
T ss_pred             eEEEeecccCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCcc
Confidence            999999999999999997653  2489999999999999999999999   999999999999998 6799999999987


Q ss_pred             ccCCC-----CCCcccccccccccccccccC---------cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcc
Q 042435          273 LLDVD-----SSNRTLQAGTYGYIALELVYT---------MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKI  338 (412)
Q Consensus       273 ~~~~~-----~~~~~~~~gt~~y~aPE~~~~---------~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~  338 (412)
                      .....     ........||+.|+|||.+.+         ..++.++||||||+++|||++|+.||....        ..
T Consensus       178 ~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~--------~~  249 (319)
T 2y4i_B          178 ISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQP--------AE  249 (319)
T ss_dssp             ----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCC--------HH
T ss_pred             ccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCC--------HH
Confidence            54321     122234468999999999864         357889999999999999999999987321        11


Q ss_pred             hhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCC
Q 042435          339 MLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKK  396 (412)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  396 (412)
                      .....+.....+.....  .....+.+++.+||+.||++|||+.|+++.|+++.....
T Consensus       250 ~~~~~~~~~~~~~~~~~--~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~  305 (319)
T 2y4i_B          250 AIIWQMGTGMKPNLSQI--GMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNR  305 (319)
T ss_dssp             HHHHHHHTTCCCCCCCS--SCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC-----
T ss_pred             HHHHHhccCCCCCCCcC--CCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhhc
Confidence            11111111111111100  011237789999999999999999999999999876543

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=4e-39  Score=308.84  Aligned_cols=243  Identities=21%  Similarity=0.326  Sum_probs=185.9

Q ss_pred             hcCcccceeeeecCceEEEEEEe-----CCCcEEEEEec---------------------cCCccccceEEEecC--ceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-----PDGKVVALKKL---------------------HHSETEDSAFVVYSP--QCM  193 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-----~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~--~~~  193 (412)
                      .++|++.+.||+|+||.||+|.+     .+++.||||++                     +|+++.....++...  ...
T Consensus        40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  119 (326)
T 2w1i_A           40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL  119 (326)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred             HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence            35689999999999999999984     46899999975                     356666666655544  368


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ++||||+++|+|.+++.....  .+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.
T Consensus       120 ~lv~e~~~~~~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~~~  194 (326)
T 2w1i_A          120 KLIMEYLPYGSLRDYLQKHKE--RIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKV  194 (326)
T ss_dssp             EEEECCCTTCBHHHHHHHSTT--SSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred             EEEEECCCCCCHHHHHHhccc--CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcchhh
Confidence            999999999999999976532  489999999999999999999998   999999999999999999999999999987


Q ss_pred             cCCCCCC---cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccc-c---ccCCCCcc----hhhH
Q 042435          274 LDVDSSN---RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLS-L---SSSSGPKI----MLID  342 (412)
Q Consensus       274 ~~~~~~~---~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~-~---~~~~~~~~----~~~~  342 (412)
                      .......   .....++..|+|||.+.+..++.++||||||+++|||+||..|+..... .   ........    .+.+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (326)
T 2w1i_A          195 LPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIE  274 (326)
T ss_dssp             CCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHH
T ss_pred             ccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHH
Confidence            6543321   1234567889999999888899999999999999999999999763210 0   00001101    1112


Q ss_pred             HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      .+......+.+...   ...+.+++.+||+.||++|||+.|+++.|+.+.
T Consensus       275 ~~~~~~~~~~~~~~---~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~  321 (326)
T 2w1i_A          275 LLKNNGRLPRPDGC---PDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR  321 (326)
T ss_dssp             HHHTTCCCCCCTTC---CHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HhhcCCCCCCCCcc---cHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            22222222222222   234888999999999999999999999998764

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=1.1e-38  Score=308.74  Aligned_cols=240  Identities=18%  Similarity=0.243  Sum_probs=175.9

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEec--------
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYS--------  189 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~--------  189 (412)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|++                       +|+++.....++..        
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            46799999999999999999987 57999999965                       35555555555544        


Q ss_pred             CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      .+..++||||+++ +|.+.+.....  .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||
T Consensus        96 ~~~~~lv~e~~~~-~l~~~l~~~~~--~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg  169 (351)
T 3mi9_A           96 KGSIYLVFDFCEH-DLAGLLSNVLV--KFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFG  169 (351)
T ss_dssp             -CEEEEEEECCSE-EHHHHHHCTTS--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred             CceEEEEEeccCC-CHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccch
Confidence            4568999999975 77776655432  489999999999999999999999   99999999999999999999999999


Q ss_pred             CccccCCCC----CCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccc-------------c
Q 042435          270 TVRLLDVDS----SNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSL-------------S  331 (412)
Q Consensus       270 la~~~~~~~----~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~-------------~  331 (412)
                      +++......    .......||+.|+|||++.+ ..++.++|||||||++|||+||+.||......             .
T Consensus       170 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~  249 (351)
T 3mi9_A          170 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSIT  249 (351)
T ss_dssp             TCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred             hcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCC
Confidence            998664321    22244578999999999876 45899999999999999999999998732110             0


Q ss_pred             cCCCCcchhhHHhhhc-cCCccchhhHH------HHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          332 SSSGPKIMLIDILYQR-LSPPINQKIIQ------DIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       332 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+.....+..... ...........      ....+.+++.+||+.||++|||++|++++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  312 (351)
T 3mi9_A          250 PEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  312 (351)
T ss_dssp             TTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             hhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence            0000000000000000 00000000000      12347899999999999999999999986

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=4.9e-39  Score=334.36  Aligned_cols=225  Identities=21%  Similarity=0.271  Sum_probs=177.2

Q ss_pred             eeeeecCceEEEEEEe---CCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAEL---PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~---~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      +.||+|+||.||+|.+   ..++.||||.+                       +|+++.....++. .+..++||||+++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~-~~~~~lv~E~~~~  453 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAEL  453 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEEECCTT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCCEEEEEEccCC
Confidence            4799999999999965   34688999965                       4667777766665 4568999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC---
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS---  279 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~---  279 (412)
                      |+|.+++....   .+++..+..++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+++.......   
T Consensus       454 g~L~~~l~~~~---~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~  527 (635)
T 4fl3_A          454 GPLNKYLQQNR---HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK  527 (635)
T ss_dssp             EEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC------
T ss_pred             CCHHHHHhhCC---CCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccc
Confidence            99999997543   589999999999999999999999   999999999999999999999999999987654322   


Q ss_pred             CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          280 NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      ......+|+.|+|||++.+..++.++|||||||++|||++ |+.||...        ......+.+......+.+.... 
T Consensus       528 ~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~--------~~~~~~~~i~~~~~~~~p~~~~-  598 (635)
T 4fl3_A          528 AQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM--------KGSEVTAMLEKGERMGCPAGCP-  598 (635)
T ss_dssp             -------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC--------CHHHHHHHHHTTCCCCCCTTCC-
T ss_pred             cccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--------CHHHHHHHHHcCCCCCCCCCCC-
Confidence            1233456789999999998899999999999999999998 99998732        1112233333332222222222 


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                        ..+.+++.+||+.||++|||+.+|++.|++.
T Consensus       599 --~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~  629 (635)
T 4fl3_A          599 --REMYDLMNLCWTYDVENRPGFAAVELRLRNY  629 (635)
T ss_dssp             --HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence              3488999999999999999999999999864

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=7.4e-39  Score=315.24  Aligned_cols=235  Identities=21%  Similarity=0.232  Sum_probs=174.6

Q ss_pred             hcCcccceeeeecCceEEEEEEeCCCcEEEEEec-----------------cCCccccceEEEecCc------eEEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-----------------HHSETEDSAFVVYSPQ------CMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-----------------~~~~~~~~~~~~~~~~------~~~lv~e  198 (412)
                      ..+|++.+.||+|+||.||+|+...+..||+|++                 +|+++.....++....      ..++|||
T Consensus        39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e  118 (394)
T 4e7w_A           39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLE  118 (394)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEE
T ss_pred             cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcchHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEee
Confidence            3469999999999999999999977777999964                 5778877777664332      3789999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec-CCCcEEEeecCCccccCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN-SNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~-~~~~~kl~DfGla~~~~~~  277 (412)
                      |++++.+............+++..+..++.|+++||+|||++   +|+||||||+|||++ .++.+||+|||+++.....
T Consensus       119 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~  195 (394)
T 4e7w_A          119 YVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAG  195 (394)
T ss_dssp             CCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred             ccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCC
Confidence            998643332222111123589999999999999999999999   999999999999999 7999999999999876443


Q ss_pred             CCCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhh-----------
Q 042435          278 SSNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY-----------  345 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~-----------  345 (412)
                      .. .....||+.|+|||++.+. .++.++|||||||++|||++|+.||......       ..+..+..           
T Consensus       196 ~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~-------~~l~~i~~~~g~p~~~~~~  267 (394)
T 4e7w_A          196 EP-NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGI-------DQLVEIIKVLGTPSREQIK  267 (394)
T ss_dssp             CC-CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-------HHHHHHHHHHCCCCHHHHH
T ss_pred             CC-CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-------HHHHHHHHHhCCCCHHHHH
Confidence            32 2345789999999998764 5899999999999999999999999732110       00111110           


Q ss_pred             ---hc-----c---CCccchh--hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 ---QR-----L---SPPINQK--IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ---~~-----~---~~~~~~~--~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                         +.     .   .+.....  .......+.+++.+||+.||++|||+.|++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  322 (394)
T 4e7w_A          268 TMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCH  322 (394)
T ss_dssp             HHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             hhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcC
Confidence               00     0   0000000  00012348899999999999999999999986

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=1.8e-38  Score=303.76  Aligned_cols=242  Identities=22%  Similarity=0.265  Sum_probs=184.4

Q ss_pred             HHhhcCcccceeeeecCceEEEEEEe--CCCcEEEEEec--------------------------cCCccccceEEEe--
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAEL--PDGKVVALKKL--------------------------HHSETEDSAFVVY--  188 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~~--~~~~~vAvK~l--------------------------~~~~~~~~~~~~~--  188 (412)
                      ..+.++|++.+.||+|+||.||+|..  .+|+.||+|.+                          +|+++.....++.  
T Consensus         7 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~   86 (326)
T 1blx_A            7 CRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS   86 (326)
T ss_dssp             CCGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEE
T ss_pred             cCchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeec
Confidence            34568899999999999999999987  46889999964                          3666666666655  


Q ss_pred             ---cCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEE
Q 042435          189 ---SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFV  265 (412)
Q Consensus       189 ---~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl  265 (412)
                         .....++||||++ |+|.+++...... .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||
T Consensus        87 ~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~-~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl  161 (326)
T 1blx_A           87 RTDRETKLTLVFEHVD-QDLTTYLDKVPEP-GVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKL  161 (326)
T ss_dssp             ECSSEEEEEEEEECCS-CBHHHHHHHSCTT-CSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEE
T ss_pred             ccCCCceEEEEEecCC-CCHHHHHHhcccC-CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEE
Confidence               5667899999997 6999988754322 489999999999999999999999   9999999999999999999999


Q ss_pred             eecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhh
Q 042435          266 ADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY  345 (412)
Q Consensus       266 ~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~  345 (412)
                      +|||+++...... ......||+.|+|||++.+..++.++||||||+++|||++|+.||......       .....+..
T Consensus       162 ~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-------~~~~~i~~  233 (326)
T 1blx_A          162 ADFGLARIYSFQM-ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV-------DQLGKILD  233 (326)
T ss_dssp             CSCCSCCCCCGGG-GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-------HHHHHHHH
T ss_pred             ecCcccccccCCC-CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHH-------HHHHHHHH
Confidence            9999998654322 223457899999999999989999999999999999999999998632110       00001100


Q ss_pred             h----------------------ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH--HhcCCC
Q 042435          346 Q----------------------RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE--LEGKTP  393 (412)
Q Consensus       346 ~----------------------~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~--L~~~~~  393 (412)
                      .                      ....+...........+.+++.+||+.||++|||+.|++++  +++...
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  305 (326)
T 1blx_A          234 VIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLER  305 (326)
T ss_dssp             HHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCC
T ss_pred             HcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcCccccccch
Confidence            0                      00000000001112347789999999999999999999965  444443

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=1.1e-38  Score=309.89  Aligned_cols=248  Identities=21%  Similarity=0.225  Sum_probs=178.4

Q ss_pred             ccHHHHHHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------------------cCCcc
Q 042435          133 ILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------------------HHSET  180 (412)
Q Consensus       133 ~~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------------------~~~~~  180 (412)
                      ....++....++|.+.+.||+|+||.||+|...+|+.||||++                                +|+++
T Consensus        12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i   91 (362)
T 3pg1_A           12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNI   91 (362)
T ss_dssp             HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTB
T ss_pred             HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCc
Confidence            3457888899999999999999999999999888999999965                                35566


Q ss_pred             ccceEEEe-----cCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCE
Q 042435          181 EDSAFVVY-----SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNI  255 (412)
Q Consensus       181 ~~~~~~~~-----~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NI  255 (412)
                      .....++.     .....++||||++ |+|.+++....  ..+++..+..++.|++.||+|||++   +|+||||||+||
T Consensus        92 v~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NI  165 (362)
T 3pg1_A           92 LGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR--IVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNI  165 (362)
T ss_dssp             CCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT--SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGE
T ss_pred             cceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHHE
Confidence            66555552     3346899999997 68888776543  2589999999999999999999999   999999999999


Q ss_pred             EecCCCcEEEeecCCccccCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc--
Q 042435          256 LLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--  332 (412)
Q Consensus       256 Ll~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--  332 (412)
                      +++.++.+||+|||+++...... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||........  
T Consensus       166 l~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~  244 (362)
T 3pg1_A          166 LLADNNDITICDFNLAREDTADA-NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLN  244 (362)
T ss_dssp             EECTTCCEEECCTTC----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH
T ss_pred             EEcCCCCEEEEecCccccccccc-ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence            99999999999999997543322 2334578999999999876 6789999999999999999999999873210000  


Q ss_pred             ------CCCC--------cchhhHHhhhccCCccc----hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          333 ------SSGP--------KIMLIDILYQRLSPPIN----QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       333 ------~~~~--------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                            ....        .....+...........    .........+.+++.+||+.||++|||+.|++++
T Consensus       245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  317 (362)
T 3pg1_A          245 KIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRH  317 (362)
T ss_dssp             HHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             HHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcC
Confidence                  0000        00000011011100000    0000112347899999999999999999999986

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=4.5e-38  Score=303.81  Aligned_cols=233  Identities=23%  Similarity=0.302  Sum_probs=182.4

Q ss_pred             hcCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------------------------cCCccccc
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------------------------HHSETEDS  183 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------------------------~~~~~~~~  183 (412)
                      .++|++.+.||+|+||.||+|.. +|+.||+|.+                                      +|+++...
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            46899999999999999999998 9999999964                                      35566666


Q ss_pred             eEEEecCceEEEEEEeccCCceeee------eccCcccccCCHHHHHHHHHHHHHHHHHHHh-CCCCCcEEeCCCCCCEE
Q 042435          184 AFVVYSPQCMFFIYEYMERGSLFCV------LRDDDEAIELNWTRRMNIVKSVAHALSYLHH-DCTPSIVHRDISSNNIL  256 (412)
Q Consensus       184 ~~~~~~~~~~~lv~ey~~~gsL~~~------l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~-~~~~~ivHrDlkp~NIL  256 (412)
                      ..++...+..++||||+++|+|.++      +.... ...+++..+..++.|++.||+|||+ .   +++||||||+||+
T Consensus       109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~Nil  184 (348)
T 2pml_X          109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNY-TCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPSNIL  184 (348)
T ss_dssp             SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSS-CCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGGGEE
T ss_pred             EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhcc-ccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChHhEE
Confidence            6778888999999999999999999      55421 2369999999999999999999998 7   9999999999999


Q ss_pred             ecCCCcEEEeecCCccccCCCCCCcccccccccccccccccCc-ccCc-ccccHHHHHHHHHHHhCCCCcccccccccCC
Q 042435          257 LNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM-VVTE-KCVIYSFGVVALEVLMGTHPGELLLSLSSSS  334 (412)
Q Consensus       257 l~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~s~-ksDv~S~Gvil~elltg~~P~~~~~~~~~~~  334 (412)
                      ++.++.+||+|||+++.....  ......||+.|+|||.+.+. .++. ++||||||+++|||++|+.||.....     
T Consensus       185 ~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----  257 (348)
T 2pml_X          185 MDKNGRVKLSDFGESEYMVDK--KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKIS-----  257 (348)
T ss_dssp             ECTTSCEEECCCTTCEECBTT--EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSC-----
T ss_pred             EcCCCcEEEeccccccccccc--cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCc-----
Confidence            999999999999999865433  33445789999999999877 6666 99999999999999999999873211     


Q ss_pred             CCcchhhHHhhhccCCccc--------------hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          335 GPKIMLIDILYQRLSPPIN--------------QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                       .......+.......+..              .........+.+++.+||+.||++|||+.|++++
T Consensus       258 -~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~h  323 (348)
T 2pml_X          258 -LVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKH  323 (348)
T ss_dssp             -SHHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             -HHHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence             011111111111111100              0001122347899999999999999999999874

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=4.7e-38  Score=301.77  Aligned_cols=238  Identities=17%  Similarity=0.240  Sum_probs=178.2

Q ss_pred             hcCcccceeeeecCceEEEEEEe--CCCcEEEEEeccC--------------------C------ccccceEEEecCceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL--PDGKVVALKKLHH--------------------S------ETEDSAFVVYSPQCM  193 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~--~~~~~vAvK~l~~--------------------~------~~~~~~~~~~~~~~~  193 (412)
                      .++|++.+.||+|+||.||+|..  .+++.||||.++.                    .      ++......+...+..
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~   92 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHI   92 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEE
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcE
Confidence            35799999999999999999976  3689999998642                    1      244455567778899


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC--------------
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS--------------  259 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~--------------  259 (412)
                      ++||||+ +++|.+++..... ..+++..+..++.|++.||+|||++   +|+||||||+||+++.              
T Consensus        93 ~lv~e~~-~~~l~~~l~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~  167 (339)
T 1z57_A           93 CIVFELL-GLSTYDFIKENGF-LPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKIKRD  167 (339)
T ss_dssp             EEEEECC-CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC----CE
T ss_pred             EEEEcCC-CCCHHHHHHhcCC-CCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCccccc
Confidence            9999999 8899998875532 2488999999999999999999999   9999999999999987              


Q ss_pred             -----CCcEEEeecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccccccc--
Q 042435          260 -----NLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--  332 (412)
Q Consensus       260 -----~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--  332 (412)
                           ++.+||+|||+++.....   .....||+.|+|||++.+..++.++|||||||++|||++|+.||........  
T Consensus       168 ~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~  244 (339)
T 1z57_A          168 ERTLINPDIKVVDFGSATYDDEH---HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLA  244 (339)
T ss_dssp             EEEESCCCEEECCCSSCEETTSC---CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHH
T ss_pred             cccccCCCceEeeCcccccCccc---cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHH
Confidence                 668999999999864332   2345789999999999999999999999999999999999999863211000  


Q ss_pred             ------CCCCcc----------------------hhhHHhhhccCCc--cchhhHHHHHHHHHHHHhcCcCCCCCCCCHH
Q 042435          333 ------SSGPKI----------------------MLIDILYQRLSPP--INQKIIQDIILVSTIALACLRSKPKSRPTMQ  382 (412)
Q Consensus       333 ------~~~~~~----------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~  382 (412)
                            ...+..                      ...........+.  ...........+.+++.+||+.||++|||+.
T Consensus       245 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~  324 (339)
T 1z57_A          245 MMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLR  324 (339)
T ss_dssp             HHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             HHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHH
Confidence                  000000                      0000000000000  0000112234588999999999999999999


Q ss_pred             HHHHH
Q 042435          383 RISQE  387 (412)
Q Consensus       383 evl~~  387 (412)
                      |++++
T Consensus       325 ell~h  329 (339)
T 1z57_A          325 EALKH  329 (339)
T ss_dssp             HHTTS
T ss_pred             HHhcC
Confidence            99865

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=1.9e-38  Score=315.96  Aligned_cols=178  Identities=24%  Similarity=0.293  Sum_probs=147.2

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecC-----c
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSP-----Q  191 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~-----~  191 (412)
                      ..++|++.+.||+|+||.||+|.. .+++.||||++                       +|+++.....++...     +
T Consensus        24 i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  103 (432)
T 3n9x_A           24 VPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD  103 (432)
T ss_dssp             CCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred             ecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence            357899999999999999999976 46889999975                       456666666665544     5


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                      ..|+||||++ |+|.+++....   .+++..+..++.||++||+|||+.   +|+||||||+|||++.++.+||+|||++
T Consensus       104 ~~~lv~e~~~-~~L~~~~~~~~---~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla  176 (432)
T 3n9x_A          104 ELYIVLEIAD-SDLKKLFKTPI---FLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLA  176 (432)
T ss_dssp             CEEEEEECCS-EEHHHHHHSSC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             eEEEEEecCC-cCHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCc
Confidence            7899999996 59999887643   589999999999999999999999   9999999999999999999999999999


Q ss_pred             cccCCCCC----------------------Ccccccccccccccccc-cCcccCcccccHHHHHHHHHHHhCCCCcc
Q 042435          272 RLLDVDSS----------------------NRTLQAGTYGYIALELV-YTMVVTEKCVIYSFGVVALEVLMGTHPGE  325 (412)
Q Consensus       272 ~~~~~~~~----------------------~~~~~~gt~~y~aPE~~-~~~~~s~ksDv~S~Gvil~elltg~~P~~  325 (412)
                      +.......                      ......||+.|+|||++ ....++.++|||||||++|||++|..||.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~  253 (432)
T 3n9x_A          177 RTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI  253 (432)
T ss_dssp             EEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred             ccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence            87643321                      12456789999999986 56679999999999999999999766654

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=2.3e-38  Score=310.38  Aligned_cols=181  Identities=20%  Similarity=0.236  Sum_probs=151.6

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEeccC---------------------Cc-----cccceEEEecCce
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHH---------------------SE-----TEDSAFVVYSPQC  192 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l~~---------------------~~-----~~~~~~~~~~~~~  192 (412)
                      ...++|++.+.||+|+||+||+|... +++.||||.++.                     ++     +......+...+.
T Consensus        51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~  130 (382)
T 2vx3_A           51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH  130 (382)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred             EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence            44678999999999999999999764 688999998742                     21     3444455677889


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec--CCCcEEEeecCC
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN--SNLEAFVADFGT  270 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~--~~~~~kl~DfGl  270 (412)
                      .++||||++ |+|.+++..... ..+++..+..++.|++.||+|||++ ..+|+||||||+|||++  .++.+||+|||+
T Consensus       131 ~~lv~e~~~-~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~  207 (382)
T 2vx3_A          131 LCLVFEMLS-YNLYDLLRNTNF-RGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGS  207 (382)
T ss_dssp             EEEEEECCC-CBHHHHHHHTTT-SCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTT
T ss_pred             eEEEEecCC-CCHHHHHhhcCc-CCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccC
Confidence            999999996 599998876532 2489999999999999999999953 33899999999999994  578899999999


Q ss_pred             ccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccc
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGEL  326 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~  326 (412)
                      ++.....   .....||+.|+|||++.+..++.++|||||||++|||+||+.||..
T Consensus       208 a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~  260 (382)
T 2vx3_A          208 SCQLGQR---IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSG  260 (382)
T ss_dssp             CEETTCC---CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             ceecccc---cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            9876432   2345789999999999999999999999999999999999999973

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=4.5e-38  Score=307.15  Aligned_cols=237  Identities=21%  Similarity=0.194  Sum_probs=170.7

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCc------
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQ------  191 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~------  191 (412)
                      .++|++.+.||+|+||.||+|.. .+++.||||++                       +|+++.....++...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            46899999999999999999976 46899999975                       4666666666665543      


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                      ..++||||+++ +|.+++..     .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||++
T Consensus       104 ~~~lv~e~~~~-~l~~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a  174 (371)
T 2xrw_A          104 DVYIVMELMDA-NLCQVIQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLA  174 (371)
T ss_dssp             EEEEEEECCSE-EHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC-
T ss_pred             ceEEEEEcCCC-CHHHHHhh-----ccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeecc
Confidence            78999999974 77777642     488999999999999999999999   9999999999999999999999999999


Q ss_pred             cccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccc------cC-CCCc-------
Q 042435          272 RLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS------SS-SGPK-------  337 (412)
Q Consensus       272 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~------~~-~~~~-------  337 (412)
                      +...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.......      .. ..+.       
T Consensus       175 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~  253 (371)
T 2xrw_A          175 RTAGTSF-MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKL  253 (371)
T ss_dssp             ----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTS
T ss_pred             ccccccc-ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHh
Confidence            8654322 2234578999999999999999999999999999999999999996321100      00 0000       


Q ss_pred             -chhhHHh---------------hhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          338 -IMLIDIL---------------YQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       338 -~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                       .......               .....+............+.+++.+||+.||++|||++|++++-
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp  320 (371)
T 2xrw_A          254 QPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHP  320 (371)
T ss_dssp             CHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSH
T ss_pred             hhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCc
Confidence             0000000               00001111111122244588999999999999999999999863

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=1.2e-38  Score=319.89  Aligned_cols=173  Identities=27%  Similarity=0.346  Sum_probs=134.8

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEec-----Cce
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYS-----PQC  192 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~-----~~~  192 (412)
                      .++|++.+.||+|+||.||+|.. .+++.||||++                       +|+++.....++..     ...
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence            46899999999999999999976 47899999965                       56777777766633     357


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .|+||||+ +|+|.+++....   .+++..+..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++
T Consensus       132 ~~lv~e~~-~~~L~~~~~~~~---~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla~  204 (458)
T 3rp9_A          132 LYVVLEIA-DSDFKKLFRTPV---YLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLAR  204 (458)
T ss_dssp             EEEEECCC-SEEHHHHHHSSC---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCB
T ss_pred             EEEEEecc-ccchhhhcccCC---CCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccch
Confidence            89999998 568988887653   589999999999999999999999   99999999999999999999999999998


Q ss_pred             ccCCCCC---------------------------Ccccccccccccccccc-cCcccCcccccHHHHHHHHHHHhCC
Q 042435          273 LLDVDSS---------------------------NRTLQAGTYGYIALELV-YTMVVTEKCVIYSFGVVALEVLMGT  321 (412)
Q Consensus       273 ~~~~~~~---------------------------~~~~~~gt~~y~aPE~~-~~~~~s~ksDv~S~Gvil~elltg~  321 (412)
                      .......                           ......||+.|+|||++ .+..++.++|||||||++|||+||.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~  281 (458)
T 3rp9_A          205 TVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMI  281 (458)
T ss_dssp             CTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTS
T ss_pred             hccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhc
Confidence            7642211                           12345789999999976 4667999999999999999999943

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=1.2e-38  Score=309.20  Aligned_cols=240  Identities=21%  Similarity=0.237  Sum_probs=168.8

Q ss_pred             HHHHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec--------------------cCCccccceEEEecCc---
Q 042435          136 ENLIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL--------------------HHSETEDSAFVVYSPQ---  191 (412)
Q Consensus       136 ~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~---  191 (412)
                      .......++|++.+.||+|+||.||+|.. .+|+.||||++                    +|+++......+...+   
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~   95 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERD   95 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSC
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhcccccc
Confidence            45567778999999999999999999987 46899999964                    5777777766654432   


Q ss_pred             ----eEEEEEEeccCCceeeeecc-CcccccCCHHHHHHHHHHHHHHHHHHH--hCCCCCcEEeCCCCCCEEecC-CCcE
Q 042435          192 ----CMFFIYEYMERGSLFCVLRD-DDEAIELNWTRRMNIVKSVAHALSYLH--HDCTPSIVHRDISSNNILLNS-NLEA  263 (412)
Q Consensus       192 ----~~~lv~ey~~~gsL~~~l~~-~~~~~~l~~~~~~~i~~~ia~gL~~LH--~~~~~~ivHrDlkp~NILl~~-~~~~  263 (412)
                          ..++||||+++ +|...+.. ......+++..+..++.|++.||.|||  +.   +|+||||||+|||++. ++.+
T Consensus        96 ~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~~~~  171 (360)
T 3e3p_A           96 RRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEADGTL  171 (360)
T ss_dssp             TTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTTTEE
T ss_pred             ccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCCCcE
Confidence                37899999986 55443332 112235889999999999999999999  66   9999999999999996 8999


Q ss_pred             EEeecCCccccCCCCCCcccccccccccccccccCcc-cCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhH
Q 042435          264 FVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMV-VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLID  342 (412)
Q Consensus       264 kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~  342 (412)
                      ||+|||+++....... .....||+.|+|||++.+.. ++.++|||||||++|||++|+.||.....       ......
T Consensus       172 kl~Dfg~a~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~-------~~~~~~  243 (360)
T 3e3p_A          172 KLCDFGSAKKLSPSEP-NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNS-------AGQLHE  243 (360)
T ss_dssp             EECCCTTCBCCCTTSC-CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-------HHHHHH
T ss_pred             EEeeCCCceecCCCCC-cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCCh-------HHHHHH
Confidence            9999999987654332 23456899999999986654 89999999999999999999999973211       001111


Q ss_pred             HhhhccCC---------------------ccc------hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          343 ILYQRLSP---------------------PIN------QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       343 ~~~~~~~~---------------------~~~------~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      +......+                     ...      .........+.+++.+||+.||++|||+.|++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  315 (360)
T 3e3p_A          244 IVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCH  315 (360)
T ss_dssp             HHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             HHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcC
Confidence            11000000                     000      0000123458899999999999999999999986

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=7.2e-39  Score=311.17  Aligned_cols=237  Identities=23%  Similarity=0.276  Sum_probs=182.0

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .++|++.+.||+|+||.||+|... +++.||+|.+                      +|+++......+...+..++|||
T Consensus        32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  111 (360)
T 3eqc_A           32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME  111 (360)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence            357999999999999999999875 6899999964                      56777788888888999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+++|+|.+++....   .+++..+..++.|++.||+|||+.+  +|+||||||+||+++.++.+||+|||+++..... 
T Consensus       112 ~~~~~~L~~~l~~~~---~~~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-  185 (360)
T 3eqc_A          112 HMDGGSLDQVLKKAG---RIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-  185 (360)
T ss_dssp             CCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH-
T ss_pred             CCCCCCHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHhC--CEEcCCccHHHEEECCCCCEEEEECCCCcccccc-
Confidence            999999999987543   5899999999999999999999832  7999999999999999999999999998754322 


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccc---------------------------
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS---------------------------  331 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~---------------------------  331 (412)
                       ......||+.|+|||++.+..++.++||||||+++|||++|+.||.......                           
T Consensus       186 -~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (360)
T 3eqc_A          186 -MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPL  264 (360)
T ss_dssp             -C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC---------------------
T ss_pred             -cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcc
Confidence             1233478999999999999999999999999999999999999986321000                           


Q ss_pred             ----cCCCCcchh---hHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          332 ----SSSGPKIML---IDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       332 ----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                          ....+....   .+.......+.....  .....+.+++.+||+.||++|||++|++++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  325 (360)
T 3eqc_A          265 NKFGMDSRPPMAIFELLDYIVNEPPPKLPSG--VFSLEFQDFVNKCLIKNPAERADLKQLMVH  325 (360)
T ss_dssp             ---------CCCHHHHHHHHHHSCCCCCCTT--TSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             cccccCCCCcccchhhhhHHhccCCCCCCcc--cccHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence                000000000   111111111111110  112247899999999999999999999875

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.8e-38  Score=309.57  Aligned_cols=236  Identities=22%  Similarity=0.258  Sum_probs=172.9

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecC------
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSP------  190 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~------  190 (412)
                      ..++|++.+.||+|+||.||+|.. .+|+.||||++                       +|+++.....++...      
T Consensus        23 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~  102 (367)
T 1cm8_A           23 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF  102 (367)
T ss_dssp             CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             ecceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence            356899999999999999999977 57999999976                       456666666666554      


Q ss_pred             ceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCC
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGT  270 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGl  270 (412)
                      ...++||||+ +++|.+++...    .+++..+..++.|+++||+|||++   +|+||||||+||+++.++.+||+|||+
T Consensus       103 ~~~~lv~e~~-~~~L~~~~~~~----~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~  174 (367)
T 1cm8_A          103 TDFYLVMPFM-GTDLGKLMKHE----KLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGL  174 (367)
T ss_dssp             CCCEEEEECC-SEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred             ceEEEEEecC-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeec
Confidence            3469999999 78999888653    489999999999999999999999   999999999999999999999999999


Q ss_pred             ccccCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcc---
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKI---  338 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~---  338 (412)
                      ++.....   .....+|+.|+|||++.+ ..++.++||||+||++|||++|+.||........        ...+..   
T Consensus       175 a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~  251 (367)
T 1cm8_A          175 ARQADSE---MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQ  251 (367)
T ss_dssp             CEECCSS---CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHH
T ss_pred             ccccccc---cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHH
Confidence            9875432   234578999999999877 6799999999999999999999999963211000        000000   


Q ss_pred             -----hhhHHhhhc--c-CCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          339 -----MLIDILYQR--L-SPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       339 -----~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                           .....+...  . ..............+.+++.+||+.||++|||++|++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h  308 (367)
T 1cm8_A          252 RLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH  308 (367)
T ss_dssp             TCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             HhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence                 000000000  0 000000001112347899999999999999999999986

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.5e-38  Score=310.27  Aligned_cols=237  Identities=22%  Similarity=0.231  Sum_probs=175.3

Q ss_pred             HHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------cCCccccceEEEe------------
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------HHSETEDSAFVVY------------  188 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------~~~~~~~~~~~~~------------  188 (412)
                      ....++|++.+.||+|+||.||+|.. .+|+.||||++                 +|+++......+.            
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~   82 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQP   82 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHTTCCCTTBCCEEEEEEEC----------
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcchHHHHHHHHHHcCCCCccchhheeeecCccccccccc
Confidence            34567899999999999999999976 67999999964                 5777777666553            


Q ss_pred             --------------------------cCceEEEEEEeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCC
Q 042435          189 --------------------------SPQCMFFIYEYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDC  241 (412)
Q Consensus       189 --------------------------~~~~~~lv~ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~  241 (412)
                                                .....++||||++ |+|.+.+.... ....+++..+..++.|+++||+|||+. 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-  160 (383)
T 3eb0_A           83 PDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSL-  160 (383)
T ss_dssp             ---------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             ccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence                                      2334889999998 58777765421 123589999999999999999999998 


Q ss_pred             CCCcEEeCCCCCCEEec-CCCcEEEeecCCccccCCCCCCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHh
Q 042435          242 TPSIVHRDISSNNILLN-SNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLM  319 (412)
Q Consensus       242 ~~~ivHrDlkp~NILl~-~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~ellt  319 (412)
                        +|+||||||+|||++ .++.+||+|||+++....... .....||+.|+|||.+.+. .++.++||||+||++|||++
T Consensus       161 --gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~  237 (383)
T 3eb0_A          161 --GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP-SVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELIL  237 (383)
T ss_dssp             --TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC-CCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHH
T ss_pred             --cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC-CcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHh
Confidence              999999999999998 688999999999987644332 2345789999999998765 48999999999999999999


Q ss_pred             CCCCcccccccccCCCCcchhhHHhhhccC------------------Ccc-chhh-----HHHHHHHHHHHHhcCcCCC
Q 042435          320 GTHPGELLLSLSSSSGPKIMLIDILYQRLS------------------PPI-NQKI-----IQDIILVSTIALACLRSKP  375 (412)
Q Consensus       320 g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~-~~~~-----~~~~~~~~~l~~~Cl~~dP  375 (412)
                      |+.||......       ..+..++...-.                  +.. ....     ......+.+++.+||+.||
T Consensus       238 g~~pf~~~~~~-------~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP  310 (383)
T 3eb0_A          238 GKPLFSGETSI-------DQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEP  310 (383)
T ss_dssp             SSCSSCCSSHH-------HHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSG
T ss_pred             CCCCCCCCChH-------HHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCCh
Confidence            99999732110       011111100000                  000 0000     0012237899999999999


Q ss_pred             CCCCCHHHHHHH
Q 042435          376 KSRPTMQRISQE  387 (412)
Q Consensus       376 ~~RPs~~evl~~  387 (412)
                      ++|||+.|++++
T Consensus       311 ~~R~t~~e~l~h  322 (383)
T 3eb0_A          311 DLRINPYEAMAH  322 (383)
T ss_dssp             GGSCCHHHHHTS
T ss_pred             hhCCCHHHHhcC
Confidence            999999999864

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=3.1e-38  Score=309.93  Aligned_cols=238  Identities=20%  Similarity=0.210  Sum_probs=175.4

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc----------------------------CCccccceEEEe----
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH----------------------------HSETEDSAFVVY----  188 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~----------------------------~~~~~~~~~~~~----  188 (412)
                      .++|++.+.||+|+||.||+|.. .+++.||||.++                            |+++......+.    
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~  115 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGV  115 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEET
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCC
Confidence            46799999999999999999976 568999999764                            334555555444    


Q ss_pred             cCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC-------
Q 042435          189 SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL-------  261 (412)
Q Consensus       189 ~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~-------  261 (412)
                      .....++||||+ +++|.+.+..... ..+++..+..++.|++.||+|||+++  +|+||||||+|||++.++       
T Consensus       116 ~~~~~~lv~e~~-~~~l~~~~~~~~~-~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~~~  191 (397)
T 1wak_A          116 NGTHICMVFEVL-GHHLLKWIIKSNY-QGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRLA  191 (397)
T ss_dssp             TEEEEEEEECCC-CCBHHHHHHHTTT-SCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHHHH
T ss_pred             CCceEEEEEecc-CccHHHHHHhccc-CCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhhhh
Confidence            566899999999 5566665544321 24899999999999999999999864  899999999999998765       


Q ss_pred             ------------------------------------------cEEEeecCCccccCCCCCCcccccccccccccccccCc
Q 042435          262 ------------------------------------------EAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM  299 (412)
Q Consensus       262 ------------------------------------------~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~  299 (412)
                                                                .+||+|||+++.....   .....||+.|+|||++.+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~---~~~~~gt~~y~aPE~~~~~  268 (397)
T 1wak_A          192 AEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH---FTEDIQTRQYRSLEVLIGS  268 (397)
T ss_dssp             HHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC---SCSCCSCGGGCCHHHHHTS
T ss_pred             hhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc---CccCCCCCcccCChhhcCC
Confidence                                                      7999999999865433   2334789999999999999


Q ss_pred             ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccC--------------------------C--c
Q 042435          300 VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS--------------------------P--P  351 (412)
Q Consensus       300 ~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~--~  351 (412)
                      .++.++|||||||++|||+||+.||......... ........+....-.                          .  +
T Consensus       269 ~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (397)
T 1wak_A          269 GYNTPADIWSTACMAFELATGDYLFEPHSGEEYT-RDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKP  347 (397)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSC-HHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCC
T ss_pred             CCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccC-chHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCC
Confidence            9999999999999999999999999632110000 000000000000000                          0  0


Q ss_pred             ---------cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          352 ---------INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       352 ---------~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                               ...........+.+++.+||+.||++|||++|++++
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  392 (397)
T 1wak_A          348 WGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRH  392 (397)
T ss_dssp             CCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTS
T ss_pred             cchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhC
Confidence                     000012334458899999999999999999999874

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=4.9e-39  Score=304.29  Aligned_cols=234  Identities=22%  Similarity=0.299  Sum_probs=179.9

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------cCCccccceEEEecCceEEEEE
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ...+.|++.+.||+|+||.||+|... +++.||+|.+                     +|+++......+...+..++||
T Consensus        16 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   95 (302)
T 2j7t_A           16 DPNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMI   95 (302)
T ss_dssp             CGGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEE
T ss_pred             CCccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEE
Confidence            34578999999999999999999885 5899999964                     5677777788888889999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++++|.+++....  ..+++..+..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||++......
T Consensus        96 e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  170 (302)
T 2j7t_A           96 EFCPGGAVDAIMLELD--RGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT  170 (302)
T ss_dssp             ECCTTEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH
T ss_pred             EeCCCCcHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCcccccc
Confidence            9999999998876532  2489999999999999999999999   9999999999999999999999999987543221


Q ss_pred             CCCcccccccccccccccc-----cCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          278 SSNRTLQAGTYGYIALELV-----YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~-----~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ........||+.|+|||++     ....++.++||||||+++|||++|+.||....       ................ 
T Consensus       171 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-------~~~~~~~~~~~~~~~~-  242 (302)
T 2j7t_A          171 LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELN-------PMRVLLKIAKSDPPTL-  242 (302)
T ss_dssp             HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSC-------HHHHHHHHHHSCCCCC-
T ss_pred             ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCC-------HHHHHHHHhccCCccc-
Confidence            1122334689999999998     36678899999999999999999999987321       1111111211111110 


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                       .........+.+++.+||+.||++|||+.|++++
T Consensus       243 -~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  276 (302)
T 2j7t_A          243 -LTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEH  276 (302)
T ss_dssp             -SSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTS
T ss_pred             -CCccccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence             0011112347889999999999999999999875

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=1e-38  Score=304.03  Aligned_cols=239  Identities=18%  Similarity=0.273  Sum_probs=179.8

Q ss_pred             ccHHHHHHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEecc-------------------------CCccccceEEE
Q 042435          133 ILYENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLH-------------------------HSETEDSAFVV  187 (412)
Q Consensus       133 ~~~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~-------------------------~~~~~~~~~~~  187 (412)
                      +.++.+....++|++.+.||+|+||.||++...+++.||||.++                         ++++......+
T Consensus        18 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~   97 (313)
T 3cek_A           18 LYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYE   97 (313)
T ss_dssp             --CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEE
T ss_pred             CCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEe
Confidence            33444445567899999999999999999999889999999752                         35666666778


Q ss_pred             ecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEee
Q 042435          188 YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVAD  267 (412)
Q Consensus       188 ~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~D  267 (412)
                      ...+..++||| +.+++|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+||++++ +.+||+|
T Consensus        98 ~~~~~~~lv~e-~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL~D  169 (313)
T 3cek_A           98 ITDQYIYMVME-CGNIDLNSWLKKKK---SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKLID  169 (313)
T ss_dssp             ECSSEEEEEEC-CCSEEHHHHHHHCS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEECC
T ss_pred             ecCCEEEEEEe-cCCCcHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEEee
Confidence            88889999999 55789999987653   589999999999999999999999   9999999999999964 8999999


Q ss_pred             cCCccccCCCCCC--cccccccccccccccccC-----------cccCcccccHHHHHHHHHHHhCCCCcccccccccCC
Q 042435          268 FGTVRLLDVDSSN--RTLQAGTYGYIALELVYT-----------MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSS  334 (412)
Q Consensus       268 fGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~-----------~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~  334 (412)
                      ||+++........  .....||+.|+|||.+.+           ..++.++||||||+++|||++|+.||....      
T Consensus       170 fg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~------  243 (313)
T 3cek_A          170 FGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII------  243 (313)
T ss_dssp             CSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCC------
T ss_pred             ccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHH------
Confidence            9999876443221  234568999999999865           468889999999999999999999986321      


Q ss_pred             CCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHH
Q 042435          335 GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQEL  388 (412)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L  388 (412)
                      ..................+....   ..+.+++.+||+.||++|||+.|++++-
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~ell~h~  294 (313)
T 3cek_A          244 NQISKLHAIIDPNHEIEFPDIPE---KDLQDVLKCCLKRDPKQRISIPELLAHP  294 (313)
T ss_dssp             SHHHHHHHHHCTTSCCCCCCCSC---HHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred             HHHHHHHHHHhcccccCCcccch---HHHHHHHHHHccCCcccCcCHHHHhcCc
Confidence            01111222232222222111111   2378899999999999999999999763

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=1.4e-38  Score=301.08  Aligned_cols=237  Identities=23%  Similarity=0.347  Sum_probs=173.7

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------------cCCccccceEEEecCceEEEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ..++|++.+.||+|+||.||+|.. .+++.||||.+                      +|+++......+...+..++||
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   92 (303)
T 2vwi_A           13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVM   92 (303)
T ss_dssp             CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEE
T ss_pred             chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEe
Confidence            357899999999999999999976 46899999964                      4666666677788888999999


Q ss_pred             EeccCCceeeeeccC-----cccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          198 EYMERGSLFCVLRDD-----DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       198 ey~~~gsL~~~l~~~-----~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      ||+++|+|.+++...     .....+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|||+++
T Consensus        93 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~  169 (303)
T 2vwi_A           93 KLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGVSA  169 (303)
T ss_dssp             ECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCHHHH
T ss_pred             hhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEeccchh
Confidence            999999999988641     1123589999999999999999999999   99999999999999999999999999987


Q ss_pred             ccCCCC-----CCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhh
Q 042435          273 LLDVDS-----SNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ  346 (412)
Q Consensus       273 ~~~~~~-----~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~  346 (412)
                      ......     .......||+.|+|||.+.+ ..++.++||||||+++|||++|+.||.....       ..........
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-------~~~~~~~~~~  242 (303)
T 2vwi_A          170 FLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPP-------MKVLMLTLQN  242 (303)
T ss_dssp             HCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCG-------GGHHHHHHTS
T ss_pred             eeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCch-------hhHHHHHhcc
Confidence            654321     11234568999999999875 5689999999999999999999999873211       1111111111


Q ss_pred             ccCCccc-----hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          347 RLSPPIN-----QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       347 ~~~~~~~-----~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .......     .........+.+++.+||+.||++|||+.|++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  288 (303)
T 2vwi_A          243 DPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRH  288 (303)
T ss_dssp             SCCCTTC-----CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred             CCCccccccccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence            1000000     0000111237889999999999999999999875

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=3.3e-38  Score=313.14  Aligned_cols=233  Identities=23%  Similarity=0.301  Sum_probs=172.8

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------cCCccccceEEEec------CceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------HHSETEDSAFVVYS------PQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------~~~~~~~~~~~~~~------~~~~~lv~e  198 (412)
                      .+|++.+.||+|+||.||+|... +|+.||||++                 +|+++.....++..      ....++|||
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e  133 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLD  133 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehh
Confidence            46889999999999999999875 6999999964                 56777776665532      224679999


Q ss_pred             eccCCceeeeeccC-cccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC-CcEEEeecCCccccCC
Q 042435          199 YMERGSLFCVLRDD-DEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN-LEAFVADFGTVRLLDV  276 (412)
Q Consensus       199 y~~~gsL~~~l~~~-~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~-~~~kl~DfGla~~~~~  276 (412)
                      |+++ +|.+.+... .....+++..+..++.|+++||+|||++   +|+||||||+|||++.+ +.+||+|||+++....
T Consensus       134 ~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~  209 (420)
T 1j1b_A          134 YVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR  209 (420)
T ss_dssp             CCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred             cccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchhhhhccc
Confidence            9975 665555421 1123589999999999999999999998   99999999999999955 6789999999987644


Q ss_pred             CCCCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhh----------
Q 042435          277 DSSNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY----------  345 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~----------  345 (412)
                      ... .....||+.|+|||++.+. .++.++|||||||++|||++|+.||......       ..+.+++.          
T Consensus       210 ~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~-------~~l~~i~~~lg~p~~~~~  281 (420)
T 1j1b_A          210 GEP-NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGV-------DQLVEIIKVLGTPTREQI  281 (420)
T ss_dssp             TCC-CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-------HHHHHHHHHHCSCCHHHH
T ss_pred             CCC-ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHH-------HHHHHHHHHhCCCCHHHH
Confidence            322 2345789999999998764 7899999999999999999999999632110       01111111          


Q ss_pred             ----hcc---C-Cccch-hh-----HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 ----QRL---S-PPINQ-KI-----IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ----~~~---~-~~~~~-~~-----~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                          +..   . +.... ..     ......+.+|+.+||+.||++|||+.|++++
T Consensus       282 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~h  337 (420)
T 1j1b_A          282 REMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH  337 (420)
T ss_dssp             HHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCC
Confidence                000   0 00000 00     0112348899999999999999999999875

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=3e-38  Score=307.95  Aligned_cols=236  Identities=21%  Similarity=0.236  Sum_probs=161.3

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecC------
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSP------  190 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~------  190 (412)
                      ..++|++.+.||+|+||.||+|.. .+|+.||||++                       +|+++.....++...      
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~  106 (367)
T 2fst_X           27 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF  106 (367)
T ss_dssp             EETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             CCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence            357899999999999999999975 57899999976                       356666666665443      


Q ss_pred             ceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCC
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGT  270 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGl  270 (412)
                      ...++|+||+ +++|.+++...    .+++..+..++.|+++||+|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus       107 ~~~~lv~e~~-~~~L~~~~~~~----~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~  178 (367)
T 2fst_X          107 NDVYLVTHLM-GADLNNIVKCQ----KLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGL  178 (367)
T ss_dssp             CCCEEEEECC-CEECC-----C----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC---
T ss_pred             CeEEEEeccc-CCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeeccc
Confidence            5679999999 68999988753    489999999999999999999998   999999999999999999999999999


Q ss_pred             ccccCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCC------
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSG------  335 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~------  335 (412)
                      ++.....   .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||........        ...      
T Consensus       179 a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~  255 (367)
T 2fst_X          179 ARHTADE---MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLK  255 (367)
T ss_dssp             ---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHT
T ss_pred             ccccccc---CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence            9865432   234578999999999876 6789999999999999999999999963211000        000      


Q ss_pred             --CcchhhHHhhhccCCc---cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          336 --PKIMLIDILYQRLSPP---INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       336 --~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                        ........+......+   ...........+.+++.+||+.||++|||+.|++++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h  312 (367)
T 2fst_X          256 KISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  312 (367)
T ss_dssp             TCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             HhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence              0000011111000000   000000112347899999999999999999999986

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=3.5e-38  Score=329.03  Aligned_cols=236  Identities=22%  Similarity=0.304  Sum_probs=184.0

Q ss_pred             HhhcCcccceeeeecCceEEEEEEeC----CCcEEEEEec----------------------cCCccccceEEEecCceE
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAELP----DGKVVALKKL----------------------HHSETEDSAFVVYSPQCM  193 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~~----~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~  193 (412)
                      ...++|++.+.||+|+||.||+|.+.    .+..||+|.+                      +|+++.....++ ..+..
T Consensus       387 i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~-~~~~~  465 (656)
T 2j0j_A          387 IQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI-TENPV  465 (656)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-CSSSC
T ss_pred             cccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEE-ecCce
Confidence            34567899999999999999999874    2567999964                      477777777766 45678


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ++||||+++|+|.+++....  ..+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.
T Consensus       466 ~lv~E~~~~g~L~~~l~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a~~  540 (656)
T 2j0j_A          466 WIIMELCTLGELRSFLQVRK--FSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRY  540 (656)
T ss_dssp             EEEEECCTTCBHHHHHHHTT--TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCCCS
T ss_pred             EEEEEcCCCCcHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCCee
Confidence            99999999999999987543  2489999999999999999999999   999999999999999999999999999987


Q ss_pred             cCCCCCC-cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCc
Q 042435          274 LDVDSSN-RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPP  351 (412)
Q Consensus       274 ~~~~~~~-~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (412)
                      ....... .....+|+.|+|||++.+..++.++||||||+++|||++ |..||....       . ......+......+
T Consensus       541 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~-------~-~~~~~~i~~~~~~~  612 (656)
T 2j0j_A          541 MEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK-------N-NDVIGRIENGERLP  612 (656)
T ss_dssp             CCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC-------H-HHHHHHHHHTCCCC
T ss_pred             cCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCC-------H-HHHHHHHHcCCCCC
Confidence            6443221 233456789999999988899999999999999999997 999987321       1 11122222222222


Q ss_pred             cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      .+...   ...+.+++.+||+.||++|||+.|+++.|+++.
T Consensus       613 ~~~~~---~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il  650 (656)
T 2j0j_A          613 MPPNC---PPTLYSLMTKCWAYDPSRRPRFTELKAQLSTIL  650 (656)
T ss_dssp             CCTTC---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCccc---cHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence            22222   224788999999999999999999999998764

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=6.8e-38  Score=305.00  Aligned_cols=235  Identities=23%  Similarity=0.268  Sum_probs=179.3

Q ss_pred             HHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------------cCCccccceEEEecC----
Q 042435          138 LIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------HHSETEDSAFVVYSP----  190 (412)
Q Consensus       138 l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~----  190 (412)
                      +....++|++.+.||+|+||.||+|.. .+++.||||++                      +|+++.....++...    
T Consensus        22 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~  101 (364)
T 3qyz_A           22 VFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQ  101 (364)
T ss_dssp             BCCCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTT
T ss_pred             eccccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccc
Confidence            334567899999999999999999976 46889999975                      466776666666543    


Q ss_pred             -ceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          191 -QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       191 -~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                       ...++||||++ |+|.+++...    .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||
T Consensus       102 ~~~~~iv~e~~~-~~L~~~l~~~----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg  173 (364)
T 3qyz_A          102 MKDVYIVQDLME-TDLYKLLKTQ----HLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFG  173 (364)
T ss_dssp             CCCEEEEEECCS-EEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCT
T ss_pred             cceEEEEEcccC-cCHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCc
Confidence             46899999997 5898888654    489999999999999999999999   99999999999999999999999999


Q ss_pred             CccccCCCCCC---cccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhh
Q 042435          270 TVRLLDVDSSN---RTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY  345 (412)
Q Consensus       270 la~~~~~~~~~---~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~  345 (412)
                      +++........   .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.....       ......+..
T Consensus       174 ~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-------~~~~~~i~~  246 (364)
T 3qyz_A          174 LARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHY-------LDQLNHILG  246 (364)
T ss_dssp             TCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSG-------GGHHHHHHH
T ss_pred             ceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCCh-------HHHHHHHHH
Confidence            99866433221   234579999999998754 4589999999999999999999999963211       011111110


Q ss_pred             h----------------------ccCCc----cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 Q----------------------RLSPP----INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ~----------------------~~~~~----~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .                      .....    ...........+.+++.+||+.||++|||+.|++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  314 (364)
T 3qyz_A          247 ILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  314 (364)
T ss_dssp             HHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             HhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            0                      00000    000001112347899999999999999999999986

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=4.4e-38  Score=297.19  Aligned_cols=230  Identities=22%  Similarity=0.376  Sum_probs=170.8

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec--------------------cCCccccceEEEec----------
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL--------------------HHSETEDSAFVVYS----------  189 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l--------------------~~~~~~~~~~~~~~----------  189 (412)
                      ..++|++.+.||+|+||.||+|.. .+++.||||.+                    +|+++......+..          
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (303)
T 1zy4_A            4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA   83 (303)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred             ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence            356799999999999999999987 47999999964                    46777666555432          


Q ss_pred             ---CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEe
Q 042435          190 ---PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVA  266 (412)
Q Consensus       190 ---~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~  266 (412)
                         ....++||||+++|+|.+++....  ..+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+
T Consensus        84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~kl~  158 (303)
T 1zy4_A           84 VKKKSTLFIQMEYCENGTLYDLIHSEN--LNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKIG  158 (303)
T ss_dssp             --CEEEEEEEEECCCSCBHHHHHHHSC--GGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEEC
T ss_pred             cccCCceEEEEecCCCCCHHHhhhccc--cccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEEEe
Confidence               467899999999999999997543  2478899999999999999999999   99999999999999999999999


Q ss_pred             ecCCccccCCCC--------------CCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccc
Q 042435          267 DFGTVRLLDVDS--------------SNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLS  331 (412)
Q Consensus       267 DfGla~~~~~~~--------------~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~  331 (412)
                      |||+++......              .......||+.|+|||++.+. .++.++||||||+++|||++   ||.....  
T Consensus       159 dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~--  233 (303)
T 1zy4_A          159 DFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGME--  233 (303)
T ss_dssp             CCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHH--
T ss_pred             eCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchh--
Confidence            999998654221              112345689999999998764 68999999999999999998   4431100  


Q ss_pred             cCCCCcchhhHHhhh--ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          332 SSSGPKIMLIDILYQ--RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       332 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                          .......+...  ..++....   .....+.+++.+||+.||++|||+.|++++
T Consensus       234 ----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~l~~dp~~Rps~~~ll~h  284 (303)
T 1zy4_A          234 ----RVNILKKLRSVSIEFPPDFDD---NKMKVEKKIIRLLIDHDPNKRPGARTLLNS  284 (303)
T ss_dssp             ----HHHHHHHHHSTTCCCCTTCCT---TTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             ----HHHHHHhccccccccCccccc---cchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence                00001111111  11111111   112337889999999999999999999975

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=7.3e-38  Score=299.42  Aligned_cols=223  Identities=24%  Similarity=0.308  Sum_probs=179.1

Q ss_pred             HHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------------CCccccceEEEe
Q 042435          139 IDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------------HSETEDSAFVVY  188 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------------~~~~~~~~~~~~  188 (412)
                      ....++|++.+.||+|+||.||+|.. .+++.||||.++                             |+++......+.
T Consensus        39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~  118 (320)
T 3a99_A           39 EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFE  118 (320)
T ss_dssp             -CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEE
T ss_pred             CCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEe
Confidence            34467899999999999999999976 578999999763                             355555566677


Q ss_pred             cCceEEEEEEeccC-CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec-CCCcEEEe
Q 042435          189 SPQCMFFIYEYMER-GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN-SNLEAFVA  266 (412)
Q Consensus       189 ~~~~~~lv~ey~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~-~~~~~kl~  266 (412)
                      ..+..++|+||+.+ ++|.+++....   .+++..+..++.|++.||+|||+.   +|+||||||+||+++ +++.+||+
T Consensus       119 ~~~~~~lv~e~~~~~~~L~~~l~~~~---~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~kL~  192 (320)
T 3a99_A          119 RPDSFVLILERPEPVQDLFDFITERG---ALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLI  192 (320)
T ss_dssp             CSSEEEEEEECCSSEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEEC
T ss_pred             cCCcEEEEEEcCCCCccHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCCCCEEEe
Confidence            88899999999976 89998887543   589999999999999999999998   999999999999999 78999999


Q ss_pred             ecCCccccCCCCCCcccccccccccccccccCccc-CcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhh
Q 042435          267 DFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVV-TEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY  345 (412)
Q Consensus       267 DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~  345 (412)
                      |||+++.....  ......||+.|+|||++.+..+ +.++||||||+++|||++|+.||....             +...
T Consensus       193 Dfg~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~-------------~~~~  257 (320)
T 3a99_A          193 DFGSGALLKDT--VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-------------EIIR  257 (320)
T ss_dssp             CCTTCEECCSS--CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------------HHHH
T ss_pred             eCccccccccc--cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh-------------hhhc
Confidence            99999876432  2234568999999999877665 678999999999999999999986321             1111


Q ss_pred             hccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .....+  ...   ...+.+++.+||+.||++|||++|++++
T Consensus       258 ~~~~~~--~~~---~~~~~~li~~~l~~dp~~Rps~~~ll~h  294 (320)
T 3a99_A          258 GQVFFR--QRV---SSECQHLIRWCLALRPSDRPTFEEIQNH  294 (320)
T ss_dssp             CCCCCS--SCC---CHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             cccccc--ccC---CHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            111111  111   1237789999999999999999999875

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.5e-38  Score=312.56  Aligned_cols=179  Identities=24%  Similarity=0.382  Sum_probs=136.0

Q ss_pred             cCccc-ceeeeecCceEEEEEEeC---CCcEEEEEec-------------------cCCccccceEEE--ecCceEEEEE
Q 042435          143 EYFHI-RYCIGTGGYDSVYKAELP---DGKVVALKKL-------------------HHSETEDSAFVV--YSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~-~~~lG~G~~g~Vy~~~~~---~~~~vAvK~l-------------------~~~~~~~~~~~~--~~~~~~~lv~  197 (412)
                      +.|++ .++||+|+||.||+|...   +++.||||++                   +|+++.....++  ......++||
T Consensus        20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~   99 (405)
T 3rgf_A           20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLF   99 (405)
T ss_dssp             HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEE
T ss_pred             hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEE
Confidence            34555 458999999999999875   5789999965                   577777777776  4477899999


Q ss_pred             EeccCCceeeeeccCc------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe----cCCCcEEEee
Q 042435          198 EYMERGSLFCVLRDDD------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL----NSNLEAFVAD  267 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl----~~~~~~kl~D  267 (412)
                      ||++ |+|.+++....      ....+++..+..++.|++.||+|||++   +|+||||||+|||+    +.++.+||+|
T Consensus       100 e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~D  175 (405)
T 3rgf_A          100 DYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIAD  175 (405)
T ss_dssp             ECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTCEEECC
T ss_pred             eCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCcEEEEE
Confidence            9996 58877775322      112489999999999999999999999   99999999999999    6788999999


Q ss_pred             cCCccccCCCC---CCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcc
Q 042435          268 FGTVRLLDVDS---SNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGE  325 (412)
Q Consensus       268 fGla~~~~~~~---~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~  325 (412)
                      ||+++......   .......||+.|+|||++.+. .++.++|||||||++|||++|+.||.
T Consensus       176 fg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~  237 (405)
T 3rgf_A          176 MGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFH  237 (405)
T ss_dssp             TTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred             CCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCC
Confidence            99998765332   122445789999999998874 58999999999999999999999996

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=5.7e-38  Score=312.71  Aligned_cols=231  Identities=21%  Similarity=0.272  Sum_probs=170.2

Q ss_pred             CcccceeeeecCceEEEEEEeCCCcEEEEEec-------------------cCCccccceEEEecCceEEEEEEeccCCc
Q 042435          144 YFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-------------------HHSETEDSAFVVYSPQCMFFIYEYMERGS  204 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~gs  204 (412)
                      .|...+.||+|+||+||.+...+|+.||||++                   +|+++......+.+.+..++||||+. |+
T Consensus        16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-gs   94 (434)
T 2rio_A           16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-LN   94 (434)
T ss_dssp             CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGGHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-EE
T ss_pred             eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-CC
Confidence            35556889999999998777778999999964                   58888888888888999999999995 69


Q ss_pred             eeeeeccCcccc-c---CCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC-------------CcEEEee
Q 042435          205 LFCVLRDDDEAI-E---LNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN-------------LEAFVAD  267 (412)
Q Consensus       205 L~~~l~~~~~~~-~---l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~-------------~~~kl~D  267 (412)
                      |.+++....... .   .++..++.++.|++.||+|||++   +|+||||||+|||++.+             +.+||+|
T Consensus        95 L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~D  171 (434)
T 2rio_A           95 LQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISD  171 (434)
T ss_dssp             HHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECC
T ss_pred             HHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCceEEEEcc
Confidence            999987654211 1   13334678999999999999999   99999999999999653             5899999


Q ss_pred             cCCccccCCCCCC----cccccccccccccccccC-------cccCcccccHHHHHHHHHHHh-CCCCcccccccccCCC
Q 042435          268 FGTVRLLDVDSSN----RTLQAGTYGYIALELVYT-------MVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSG  335 (412)
Q Consensus       268 fGla~~~~~~~~~----~~~~~gt~~y~aPE~~~~-------~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~  335 (412)
                      ||+++........    .....||+.|+|||++.+       ..++.++|||||||++|||+| |+.||....       
T Consensus       172 FG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~-------  244 (434)
T 2rio_A          172 FGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKY-------  244 (434)
T ss_dssp             CTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTT-------
T ss_pred             cccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCch-------
Confidence            9999876543221    234579999999999865       568999999999999999999 999986321       


Q ss_pred             CcchhhHHhhhccCCcc--chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          336 PKIMLIDILYQRLSPPI--NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       336 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .  ....+.......+.  ..........+.+++.+||+.||++|||+.|++++
T Consensus       245 ~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h  296 (434)
T 2rio_A          245 S--RESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRH  296 (434)
T ss_dssp             T--HHHHHHHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             h--hHHHHhcCCCCcccccccccccchHHHHHHHHHHhhCChhhCCCHHHHHhC
Confidence            0  11122222111110  01112233458899999999999999999999864

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=9.6e-38  Score=293.65  Aligned_cols=231  Identities=23%  Similarity=0.288  Sum_probs=181.3

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEecCceEEEE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ..++|++.+.||+|+||.||+|... +++.||+|.+                       +|+++......+...+..++|
T Consensus        20 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   99 (287)
T 2wei_A           20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV   99 (287)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEE
Confidence            3468999999999999999999875 7899999975                       466777777778888999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCC---CcEEEeecCCccc
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSN---LEAFVADFGTVRL  273 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~---~~~kl~DfGla~~  273 (412)
                      +||+++++|.+++....   .+++..+..++.|++.||+|||++   +++||||||+||+++.+   ..+||+|||+++.
T Consensus       100 ~e~~~~~~L~~~l~~~~---~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~  173 (287)
T 2wei_A          100 GELYTGGELFDEIIKRK---RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTC  173 (287)
T ss_dssp             ECCCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGGGT
T ss_pred             EEccCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCccee
Confidence            99999999988876543   589999999999999999999999   99999999999999754   4799999999986


Q ss_pred             cCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccc
Q 042435          274 LDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN  353 (412)
Q Consensus       274 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (412)
                      ..... ......||+.|+|||.+.+ .++.++||||||+++|||++|+.||....       .......+.......+. 
T Consensus       174 ~~~~~-~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~-------~~~~~~~~~~~~~~~~~-  243 (287)
T 2wei_A          174 FQQNT-KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKN-------EYDILKRVETGKYAFDL-  243 (287)
T ss_dssp             BCCCS-SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS-------HHHHHHHHHHCCCCCCS-
T ss_pred             ecCCC-ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCC-------HHHHHHHHHcCCCCCCc-
Confidence            54332 2233468999999998865 48899999999999999999999986321       11111122222211111 


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .........+.+++.+||+.||++|||+.|++++
T Consensus       244 ~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h  277 (287)
T 2wei_A          244 PQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH  277 (287)
T ss_dssp             GGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred             hhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcC
Confidence            1111122347899999999999999999999984

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=2.7e-37  Score=298.54  Aligned_cols=238  Identities=19%  Similarity=0.227  Sum_probs=174.2

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CC-cEEEEEeccCC--------------------c------cccceEEEecCceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DG-KVVALKKLHHS--------------------E------TEDSAFVVYSPQCM  193 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~-~~vAvK~l~~~--------------------~------~~~~~~~~~~~~~~  193 (412)
                      .++|++.+.||+|+||.||+|... ++ +.||+|.++..                    +      +......+...+..
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~   97 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHM   97 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEE
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeE
Confidence            468999999999999999999864 34 78999987431                    1      33334456677889


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe----------------
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL----------------  257 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl----------------  257 (412)
                      ++||||+ +++|.+++..... ..+++..+..++.|++.||+|||++   +|+||||||+|||+                
T Consensus        98 ~lv~e~~-~~~l~~~l~~~~~-~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~  172 (355)
T 2eu9_A           98 CIAFELL-GKNTFEFLKENNF-QPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEHKSCE  172 (355)
T ss_dssp             EEEEECC-CCBHHHHHHHTTT-CCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC-CCC
T ss_pred             EEEEecc-CCChHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeccccccccccccccc
Confidence            9999999 6677766654432 2489999999999999999999998   99999999999999                


Q ss_pred             ---cCCCcEEEeecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccc---
Q 042435          258 ---NSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS---  331 (412)
Q Consensus       258 ---~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~---  331 (412)
                         +.++.+||+|||+++.....   .....||+.|+|||++.+..++.++|||||||++|||++|+.||.......   
T Consensus       173 ~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~  249 (355)
T 2eu9_A          173 EKSVKNTSIRVADFGSATFDHEH---HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLV  249 (355)
T ss_dssp             EEEESCCCEEECCCTTCEETTSC---CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH
T ss_pred             ccccCCCcEEEeecCcccccccc---ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence               56789999999999864332   234578999999999999999999999999999999999999996321100   


Q ss_pred             ---c--CCCCcch----------------------hhHHhhhccCCc--cchhhHHHHHHHHHHHHhcCcCCCCCCCCHH
Q 042435          332 ---S--SSGPKIM----------------------LIDILYQRLSPP--INQKIIQDIILVSTIALACLRSKPKSRPTMQ  382 (412)
Q Consensus       332 ---~--~~~~~~~----------------------~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~  382 (412)
                         .  ...+...                      ..........+.  ...........+.+++.+||+.||++|||+.
T Consensus       250 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~  329 (355)
T 2eu9_A          250 MMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLA  329 (355)
T ss_dssp             HHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             HHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHH
Confidence               0  0000000                      000000000000  0000011233588999999999999999999


Q ss_pred             HHHHH
Q 042435          383 RISQE  387 (412)
Q Consensus       383 evl~~  387 (412)
                      |++++
T Consensus       330 e~l~h  334 (355)
T 2eu9_A          330 EALLH  334 (355)
T ss_dssp             HHTTS
T ss_pred             HHhcC
Confidence            99864

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=3e-37  Score=292.45  Aligned_cols=229  Identities=21%  Similarity=0.201  Sum_probs=175.1

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-------------------------cCCccccceEEE--ecCceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-------------------------HHSETEDSAFVV--YSPQCM  193 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-------------------------~~~~~~~~~~~~--~~~~~~  193 (412)
                      .++|++.+.||+|+||.||+|.. .+++.||+|.+                         +|+++.....++  ...+..
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            46899999999999999999987 46899999965                         466777766666  345678


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ++||||++++ |.+++..... ..+++..+..++.|++.||+|||++   +++||||||+||+++.++.+||+|||++..
T Consensus        84 ~lv~e~~~~~-l~~~~~~~~~-~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~  158 (305)
T 2wtk_C           84 YMVMEYCVCG-MQEMLDSVPE-KRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAEA  158 (305)
T ss_dssp             EEEEECCSEE-HHHHHHHSTT-CSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEehhccCC-HHHHHHhCcc-cccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeeccccccc
Confidence            9999999876 6666554322 2589999999999999999999999   999999999999999999999999999987


Q ss_pred             cCCCC--CCcccccccccccccccccCcc--cCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          274 LDVDS--SNRTLQAGTYGYIALELVYTMV--VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       274 ~~~~~--~~~~~~~gt~~y~aPE~~~~~~--~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      .....  .......||+.|+|||++.+..  ++.++||||||+++|||++|+.||....       .......+......
T Consensus       159 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-------~~~~~~~i~~~~~~  231 (305)
T 2wtk_C          159 LHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDN-------IYKLFENIGKGSYA  231 (305)
T ss_dssp             CCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSS-------HHHHHHHHHHCCCC
T ss_pred             cCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCch-------HHHHHHHHhcCCCC
Confidence            64322  2223456899999999987643  4789999999999999999999987321       11111111111111


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .  +...   ...+.+++.+||+.||++|||+.|++++
T Consensus       232 ~--~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~~  264 (305)
T 2wtk_C          232 I--PGDC---GPPLSDLLKGMLEYEPAKRFSIRQIRQH  264 (305)
T ss_dssp             C--CSSS---CHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             C--CCcc---CHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence            1  1111   2237789999999999999999999976

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.2e-38  Score=310.81  Aligned_cols=232  Identities=23%  Similarity=0.307  Sum_probs=171.9

Q ss_pred             hhcCcccceeeeecCceEEEEEEeCCCcEEEEEec-------------------cCCccccceEEEecCceEEEEEEecc
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-------------------HHSETEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-------------------~~~~~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      ...+|+..++||+|+||+||.....+|+.||||++                   +|+++......+.+.+..++||||++
T Consensus        22 ~~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~  101 (432)
T 3p23_A           22 GKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELCA  101 (432)
T ss_dssp             TTEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             ccEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECCC
Confidence            34568999999999999976666668999999964                   57888888888888899999999996


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec-----CCCcEEEeecCCccccCC
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN-----SNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~-----~~~~~kl~DfGla~~~~~  276 (412)
                       |+|.+++.....  ...+..+..++.|++.||+|||++   +|+||||||+|||++     ....+||+|||+++....
T Consensus       102 -g~L~~~l~~~~~--~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~  175 (432)
T 3p23_A          102 -ATLQEYVEQKDF--AHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAV  175 (432)
T ss_dssp             -EEHHHHHHSSSC--CCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC--
T ss_pred             -CCHHHHHHhcCC--CccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccC
Confidence             699998876542  244455678999999999999999   999999999999994     334688999999987654


Q ss_pred             CC---CCccccccccccccccccc---CcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          277 DS---SNRTLQAGTYGYIALELVY---TMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       277 ~~---~~~~~~~gt~~y~aPE~~~---~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      ..   .......||+.|+|||++.   ...++.++|||||||++|||+| |..||....        .. ..........
T Consensus       176 ~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~--------~~-~~~~~~~~~~  246 (432)
T 3p23_A          176 GRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSL--------QR-QANILLGACS  246 (432)
T ss_dssp             ----------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTT--------TH-HHHHHTTCCC
T ss_pred             CCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhh--------HH-HHHHHhccCC
Confidence            32   2234457999999999997   4567889999999999999999 999986211        11 1111111111


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .............+.+++.+||+.||++|||+.|++++
T Consensus       247 ~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~h  284 (432)
T 3p23_A          247 LDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLKH  284 (432)
T ss_dssp             CTTSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             ccccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHhC
Confidence            11101111223347789999999999999999999853

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=296.29  Aligned_cols=225  Identities=23%  Similarity=0.314  Sum_probs=173.8

Q ss_pred             HHHHhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-------------------------------cCCccccce
Q 042435          137 NLIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-------------------------------HHSETEDSA  184 (412)
Q Consensus       137 ~l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-------------------------------~~~~~~~~~  184 (412)
                      +.....++|++.+.||+|+||.||+|.. .+++.||||.+                               +|+++....
T Consensus        25 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~  104 (312)
T 2iwi_A           25 DREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL  104 (312)
T ss_dssp             --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred             chhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence            3344567899999999999999999976 56899999986                               356666666


Q ss_pred             EEEecCceEEEEEEe-ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec-CCCc
Q 042435          185 FVVYSPQCMFFIYEY-MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN-SNLE  262 (412)
Q Consensus       185 ~~~~~~~~~~lv~ey-~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~-~~~~  262 (412)
                      .++...+..++|+|| +++++|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+||+++ .++.
T Consensus       105 ~~~~~~~~~~~v~e~~~~~~~L~~~l~~~~---~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~  178 (312)
T 2iwi_A          105 DWFETQEGFMLVLERPLPAQDLFDYITEKG---PLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGC  178 (312)
T ss_dssp             EEC-----CEEEEECCSSEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTE
T ss_pred             EEEecCCeEEEEEEecCCCCCHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCe
Confidence            667777889999999 78999999987543   589999999999999999999999   999999999999999 8899


Q ss_pred             EEEeecCCccccCCCCCCcccccccccccccccccCcccC-cccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhh
Q 042435          263 AFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVT-EKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLI  341 (412)
Q Consensus       263 ~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s-~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~  341 (412)
                      +||+|||+++.....  ......||..|+|||++.+..+. .++||||||+++|||++|+.||....             
T Consensus       179 ~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-------------  243 (312)
T 2iwi_A          179 AKLIDFGSGALLHDE--PYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ-------------  243 (312)
T ss_dssp             EEECCCSSCEECCSS--CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------------
T ss_pred             EEEEEcchhhhcccC--cccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH-------------
Confidence            999999999876543  23345689999999998766654 58999999999999999999987321             


Q ss_pred             HHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          342 DILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      +........+  ...   ...+.+++.+||+.||++|||++|++++
T Consensus       244 ~~~~~~~~~~--~~~---~~~~~~li~~~l~~~p~~Rps~~e~l~~  284 (312)
T 2iwi_A          244 EILEAELHFP--AHV---SPDCCALIRRCLAPKPSSRPSLEEILLD  284 (312)
T ss_dssp             HHHHTCCCCC--TTS---CHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred             HHhhhccCCc--ccC---CHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            1111211111  111   1237789999999999999999999985

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=2.1e-37  Score=301.76  Aligned_cols=233  Identities=18%  Similarity=0.229  Sum_probs=175.7

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-------------------------------CCccccceEEEec
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-------------------------------HSETEDSAFVVYS  189 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-------------------------------~~~~~~~~~~~~~  189 (412)
                      .++|++.+.||+|+||.||+|.. .+++.||||.++                               |+++......+..
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~   97 (373)
T 1q8y_A           18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   97 (373)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence            35799999999999999999976 578999999874                               3455555555543


Q ss_pred             Cc----eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec------C
Q 042435          190 PQ----CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN------S  259 (412)
Q Consensus       190 ~~----~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~------~  259 (412)
                      .+    ..++||||+ +++|.+++..... ..+++..+..++.|++.||+|||+++  +|+||||||+|||++      .
T Consensus        98 ~~~~~~~~~lv~e~~-~~~L~~~~~~~~~-~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~~~~  173 (373)
T 1q8y_A           98 KGPNGVHVVMVFEVL-GENLLALIKKYEH-RGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPEN  173 (373)
T ss_dssp             EETTEEEEEEEECCC-CEEHHHHHHHTTT-SCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEETTTT
T ss_pred             cCCCCceEEEEEecC-CCCHHHHHHHhhc-cCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCCCcC
Confidence            32    789999999 8899998875432 24899999999999999999999853  899999999999994      4


Q ss_pred             CCcEEEeecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcch
Q 042435          260 NLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIM  339 (412)
Q Consensus       260 ~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~  339 (412)
                      .+.+||+|||+++.....   .....||+.|+|||++.+..++.++|||||||++|||+||+.||........ ......
T Consensus       174 ~~~~kl~Dfg~a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~-~~~~~~  249 (373)
T 1q8y_A          174 LIQIKIADLGNACWYDEH---YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSY-TKDDDH  249 (373)
T ss_dssp             EEEEEECCCTTCEETTBC---CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC----------CHHHH
T ss_pred             cceEEEcccccccccCCC---CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCccccc-CChHHH
Confidence            458999999999866432   2334789999999999999999999999999999999999999973211000 000000


Q ss_pred             hhHH------------------------------------------hhhccCCccchhhHHHHHHHHHHHHhcCcCCCCC
Q 042435          340 LIDI------------------------------------------LYQRLSPPINQKIIQDIILVSTIALACLRSKPKS  377 (412)
Q Consensus       340 ~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~  377 (412)
                      +..+                                          ......     ........+.+++.+||+.||++
T Consensus       250 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~li~~~L~~dP~~  324 (373)
T 1q8y_A          250 IAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYK-----FSKDEAKEISDFLSPMLQLDPRK  324 (373)
T ss_dssp             HHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTC-----CCHHHHHHHHHHHGGGGCSSTTT
T ss_pred             HHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhccc-----CCcchHHHHHHHHHHHhccCccc
Confidence            0111                                          001000     01233445889999999999999


Q ss_pred             CCCHHHHHHH
Q 042435          378 RPTMQRISQE  387 (412)
Q Consensus       378 RPs~~evl~~  387 (412)
                      |||++|++++
T Consensus       325 Rpt~~ell~h  334 (373)
T 1q8y_A          325 RADAGGLVNH  334 (373)
T ss_dssp             CBCHHHHHTC
T ss_pred             cCCHHHHhhC
Confidence            9999999985

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=296.59  Aligned_cols=238  Identities=20%  Similarity=0.234  Sum_probs=169.6

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------cCCccccceEEE------------
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------HHSETEDSAFVV------------  187 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------~~~~~~~~~~~~------------  187 (412)
                      .++|++.+.||+|+||.||+|... +++.||+|++                     +|+++.....++            
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   89 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG   89 (320)
T ss_dssp             TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred             CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence            367899999999999999999875 4899999964                     467776665554            


Q ss_pred             --ecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec-CCCcEE
Q 042435          188 --YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN-SNLEAF  264 (412)
Q Consensus       188 --~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~-~~~~~k  264 (412)
                        ......++||||++ |+|.+++...    .+++..+..++.|++.||+|||++   +|+||||||+||+++ +++.+|
T Consensus        90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~k  161 (320)
T 2i6l_A           90 SLTELNSVYIVQEYME-TDLANVLEQG----PLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVLK  161 (320)
T ss_dssp             -CCSCSEEEEEEECCS-EEHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEEE
T ss_pred             cccccCceeEEeeccC-CCHHHHhhcC----CccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeEE
Confidence              34467899999997 6999888653    488999999999999999999999   999999999999997 567999


Q ss_pred             EeecCCccccCCCC---CCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc--------
Q 042435          265 VADFGTVRLLDVDS---SNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------  332 (412)
Q Consensus       265 l~DfGla~~~~~~~---~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------  332 (412)
                      |+|||+++......   .......+|..|+|||.+.+ ..++.++||||||+++|||++|+.||........        
T Consensus       162 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~  241 (320)
T 2i6l_A          162 IGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESI  241 (320)
T ss_dssp             ECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHS
T ss_pred             EccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhc
Confidence            99999998764322   12234467899999998865 6789999999999999999999999973211000        


Q ss_pred             CCCCcchhhHH-------hhhccCCc---cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          333 SSGPKIMLIDI-------LYQRLSPP---INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       333 ~~~~~~~~~~~-------~~~~~~~~---~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .........+.       .......+   ...........+.+++.+||+.||++|||+.|++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (320)
T 2i6l_A          242 PVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH  306 (320)
T ss_dssp             CCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             CCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence            00000000000       00000000   000001112348899999999999999999999875

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=1.8e-37  Score=300.16  Aligned_cols=239  Identities=20%  Similarity=0.233  Sum_probs=176.2

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecC-----ce
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSP-----QC  192 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~-----~~  192 (412)
                      ..++|++.+.||+|+||.||+|... +|+.||||.+                      +|+++.....++...     ..
T Consensus         9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   88 (353)
T 2b9h_A            9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNE   88 (353)
T ss_dssp             SCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCC
T ss_pred             cccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccce
Confidence            3578999999999999999999874 6899999975                      356666655554432     67


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .++||||++ |+|.+++...    .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+++
T Consensus        89 ~~lv~e~~~-~~L~~~~~~~----~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~  160 (353)
T 2b9h_A           89 VYIIQELMQ-TDLHRVISTQ----MLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLAR  160 (353)
T ss_dssp             EEEEECCCS-EEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCE
T ss_pred             EEEEEeccC-ccHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEeccccc
Confidence            899999997 5888887653    489999999999999999999999   99999999999999999999999999998


Q ss_pred             ccCCCCCC----------cccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccc---------c
Q 042435          273 LLDVDSSN----------RTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS---------S  332 (412)
Q Consensus       273 ~~~~~~~~----------~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~---------~  332 (412)
                      ........          .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||.......         .
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~  240 (353)
T 2b9h_A          161 IIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIG  240 (353)
T ss_dssp             ECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHC
T ss_pred             ccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhC
Confidence            76432211          123468999999998754 678999999999999999999999986321100         0


Q ss_pred             --------CCCCcchhhHHhhhccCCc---cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          333 --------SSGPKIMLIDILYQRLSPP---INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       333 --------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                              .........+........+   ...........+.+++.+||+.||++|||+.|++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  306 (353)
T 2b9h_A          241 TPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEH  306 (353)
T ss_dssp             CCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             CCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence                    0000000111111100000   000001122347899999999999999999999985

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=1.4e-37  Score=303.56  Aligned_cols=235  Identities=22%  Similarity=0.250  Sum_probs=173.7

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCceE---
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCM---  193 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~---  193 (412)
                      ..++|.+.+.||+|+||.||+|.. .+|+.||||++                       +|+++.....++...+..   
T Consensus        40 l~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~  119 (371)
T 4exu_A           40 LPKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF  119 (371)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred             ccccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence            356899999999999999999976 46899999975                       466676667776665544   


Q ss_pred             ---EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCC
Q 042435          194 ---FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGT  270 (412)
Q Consensus       194 ---~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGl  270 (412)
                         ++||||+. ++|.+++..     .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||+
T Consensus       120 ~~~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~  190 (371)
T 4exu_A          120 YDFYLVMPFMQ-TDLQKIMGM-----EFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGL  190 (371)
T ss_dssp             CCCEEEEECCC-EEHHHHTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTC
T ss_pred             eeEEEEEcccc-ccHHHHhhc-----CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCc
Confidence               99999997 588776642     389999999999999999999999   999999999999999999999999999


Q ss_pred             ccccCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc----------------C
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS----------------S  333 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~----------------~  333 (412)
                      ++.....   .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||........                .
T Consensus       191 a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~  267 (371)
T 4exu_A          191 ARHADAE---MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQ  267 (371)
T ss_dssp             C-----------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHT
T ss_pred             ccccccC---cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHH
Confidence            9865432   234578999999999877 6789999999999999999999999973211000                0


Q ss_pred             CCCcchhhHHhhhccCCccc---hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          334 SGPKIMLIDILYQRLSPPIN---QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .................+..   .........+.+++.+||+.||++|||+.|++++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h  324 (371)
T 4exu_A          268 KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  324 (371)
T ss_dssp             TCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence            00000000111110000000   0001113358899999999999999999999986

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=6.5e-38  Score=300.36  Aligned_cols=233  Identities=21%  Similarity=0.223  Sum_probs=160.1

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEecCceEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      .++|++.+.||+|+||.||+|... +|+.||||.+                       +|+++......+...+..++||
T Consensus        21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~  100 (327)
T 3aln_A           21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM  100 (327)
T ss_dssp             SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence            367899999999999999999874 7899999965                       4677777788888899999999


Q ss_pred             EeccCCceeeeeccCc--ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          198 EYMERGSLFCVLRDDD--EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~--~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||+++ +|.+++....  ....+++..+..++.|++.||.|||+..  +|+||||||+||+++.++.+||+|||+++...
T Consensus       101 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~  177 (327)
T 3aln_A          101 ELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENL--KIIHRDIKPSNILLDRSGNIKLCDFGISGQLV  177 (327)
T ss_dssp             CCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHH--SCCCSCCCGGGEEEETTTEEEECCCSSSCC--
T ss_pred             eecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccC--CEeECCCCHHHEEEcCCCCEEEccCCCceecc
Confidence            99975 7777665311  1235899999999999999999999842  79999999999999999999999999998664


Q ss_pred             CCCCCcccccccccccccccc----cCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhh---cc
Q 042435          276 VDSSNRTLQAGTYGYIALELV----YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ---RL  348 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~----~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~---~~  348 (412)
                      ... ......||+.|+|||++    .+..++.++||||||+++|||++|+.||........      ........   .+
T Consensus       178 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~------~~~~~~~~~~~~~  250 (327)
T 3aln_A          178 DSI-AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFD------QLTQVVKGDPPQL  250 (327)
T ss_dssp             -----------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------------CCCCCSCCCCC
T ss_pred             ccc-ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHH------HHHHHhcCCCCCC
Confidence            332 22334689999999998    456789999999999999999999999874211100      00011110   01


Q ss_pred             CCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          349 SPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       349 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .......   ....+.+++.+||+.||++|||+.|++++
T Consensus       251 ~~~~~~~---~~~~l~~li~~~l~~dp~~Rps~~ell~h  286 (327)
T 3aln_A          251 SNSEERE---FSPSFINFVNLCLTKDESKRPKYKELLKH  286 (327)
T ss_dssp             CCCSSCC---CCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred             CCccccc---CCHHHHHHHHHHhhCChhhCcCHHHHHhC
Confidence            1100011   12237889999999999999999999764

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=4.6e-37  Score=297.77  Aligned_cols=234  Identities=21%  Similarity=0.240  Sum_probs=172.7

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCce-----
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQC-----  192 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~-----  192 (412)
                      .++|.+.+.||+|+||.||+|.. .+|+.||||.+                       +|+++.....++...+.     
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  102 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  102 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence            46799999999999999999977 46999999975                       45666666666655543     


Q ss_pred             -EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          193 -MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       193 -~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                       .++||||++ |+|.+++..     .+++..+..++.|++.||+|||++   +|+||||||+||+++.++.+||+|||++
T Consensus       103 ~~~lv~e~~~-~~l~~~~~~-----~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~  173 (353)
T 3coi_A          103 DFYLVMPFMQ-TDLQKIMGL-----KFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLA  173 (353)
T ss_dssp             CCEEEEECCS-EEGGGTTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTCT
T ss_pred             eEEEEecccc-CCHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeecccc
Confidence             499999997 588877643     389999999999999999999999   9999999999999999999999999999


Q ss_pred             cccCCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCC-------
Q 042435          272 RLLDVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSG-------  335 (412)
Q Consensus       272 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~-------  335 (412)
                      +.....   .....||+.|+|||++.+ ..++.++||||||+++|||++|+.||........        ...       
T Consensus       174 ~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~  250 (353)
T 3coi_A          174 RHADAE---MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQK  250 (353)
T ss_dssp             TC-----------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTT
T ss_pred             cCCCCC---ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHH
Confidence            865432   234578999999999876 6789999999999999999999999973211000        000       


Q ss_pred             -CcchhhHHhhhc---cCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          336 -PKIMLIDILYQR---LSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       336 -~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                       ............   ...............+.+++.+||+.||++|||+.|++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h  306 (353)
T 3coi_A          251 LNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH  306 (353)
T ss_dssp             CSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred             HhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence             000000000000   0000000011122348899999999999999999999976

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=1.9e-37  Score=295.32  Aligned_cols=231  Identities=19%  Similarity=0.245  Sum_probs=162.3

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEecCceEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      .++|++.+.||+|+||.||+|... +|+.||||.+                       +|+++......+...+..++||
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~  103 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM  103 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence            467899999999999999999874 7999999965                       4677777788888899999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHh-CCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH-DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~-~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      ||+ ++.+..+....  ...+++..+..++.|++.||+|||+ +   +++||||||+||+++.++.+||+|||+++....
T Consensus       104 e~~-~~~~~~l~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  177 (318)
T 2dyl_A          104 ELM-GTCAEKLKKRM--QGPIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQIKLCDFGISGRLVD  177 (318)
T ss_dssp             CCC-SEEHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred             ecc-CCcHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCEEEEECCCchhccC
Confidence            999 44444333321  1258999999999999999999998 5   899999999999999999999999999976543


Q ss_pred             CCCCccccccccccccccccc-----CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCc
Q 042435          277 DSSNRTLQAGTYGYIALELVY-----TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP  351 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~-----~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (412)
                      .. ......||+.|+|||++.     ...++.++||||||+++|||++|+.||....      ............. .+.
T Consensus       178 ~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~~~~~~~-~~~  249 (318)
T 2dyl_A          178 DK-AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCK------TDFEVLTKVLQEE-PPL  249 (318)
T ss_dssp             ----------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCC------SHHHHHHHHHHSC-CCC
T ss_pred             Cc-cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCC------ccHHHHHHHhccC-CCC
Confidence            32 223456899999999984     4568899999999999999999999987321      1111112222211 111


Q ss_pred             cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .+. .......+.+++.+||+.||.+|||+.|++++
T Consensus       250 ~~~-~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h  284 (318)
T 2dyl_A          250 LPG-HMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEH  284 (318)
T ss_dssp             CCS-SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred             CCc-cCCCCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence            110 00112237889999999999999999999874

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=4.3e-37  Score=304.46  Aligned_cols=223  Identities=17%  Similarity=0.122  Sum_probs=163.8

Q ss_pred             HhhcCcccceeeeecCceEEEEEEe-CCCcEEEEEeccCCccccc----------------------------------e
Q 042435          140 DATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHHSETEDS----------------------------------A  184 (412)
Q Consensus       140 ~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~~~~~~~----------------------------------~  184 (412)
                      ..+.+|...++||+|+||.||+|.. .+|+.||||+++.......                                  .
T Consensus        75 ~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~  154 (413)
T 3dzo_A           75 ERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPF  154 (413)
T ss_dssp             SCCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCC
T ss_pred             CCceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccch
Confidence            4455688889999999999999985 5799999998762211110                                  0


Q ss_pred             EEE------------e-----cCceEEEEEEeccCCceeeeeccC----cccccCCHHHHHHHHHHHHHHHHHHHhCCCC
Q 042435          185 FVV------------Y-----SPQCMFFIYEYMERGSLFCVLRDD----DEAIELNWTRRMNIVKSVAHALSYLHHDCTP  243 (412)
Q Consensus       185 ~~~------------~-----~~~~~~lv~ey~~~gsL~~~l~~~----~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~  243 (412)
                      ...            .     .....+++|+++ +++|.+++...    .....++|..++.++.|+++||+|||++   
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---  230 (413)
T 3dzo_A          155 DLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---  230 (413)
T ss_dssp             EEEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred             hhcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---
Confidence            000            0     012356777766 67998888421    1123588999999999999999999999   


Q ss_pred             CcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcccccccccccccccc----------cCcccCcccccHHHHHH
Q 042435          244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELV----------YTMVVTEKCVIYSFGVV  313 (412)
Q Consensus       244 ~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~s~ksDv~S~Gvi  313 (412)
                      +|+||||||+|||++.++.+||+|||+++.....   .....| +.|+|||++          ....++.++|||||||+
T Consensus       231 ~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~---~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvi  306 (413)
T 3dzo_A          231 GLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS---AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLA  306 (413)
T ss_dssp             TEECSCCCGGGEEECTTCCEEECCGGGCEETTEE---ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHH
T ss_pred             CcccCCcccceEEEecCCeEEEEeccceeecCCc---cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHH
Confidence            9999999999999999999999999998865432   334467 999999999          56668899999999999


Q ss_pred             HHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHH
Q 042435          314 ALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQ  386 (412)
Q Consensus       314 l~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  386 (412)
                      +|||+||+.||......       .....+....  ...       ...+.+++.+||+.||++|||+.|+++
T Consensus       307 l~elltg~~Pf~~~~~~-------~~~~~~~~~~--~~~-------~~~~~~li~~~l~~dP~~Rpt~~~~l~  363 (413)
T 3dzo_A          307 IYWIWCADLPNTDDAAL-------GGSEWIFRSC--KNI-------PQPVRALLEGFLRYPKEDRLLPLQAME  363 (413)
T ss_dssp             HHHHHHSSCCCCTTGGG-------SCSGGGGSSC--CCC-------CHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             HHHHHHCCCCCCCcchh-------hhHHHHHhhc--ccC-------CHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            99999999999733111       0111111110  111       123788999999999999999777654

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=1.1e-35  Score=281.40  Aligned_cols=216  Identities=23%  Similarity=0.324  Sum_probs=163.1

Q ss_pred             hcCcccc-eeeeecCceEEEEEEe-CCCcEEEEEec-----------------cCCccccceEEEec----CceEEEEEE
Q 042435          142 TEYFHIR-YCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------HHSETEDSAFVVYS----PQCMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~-~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------~~~~~~~~~~~~~~----~~~~~lv~e  198 (412)
                      .++|.+. +.||+|+||.||+|.. .+++.||+|.+                 +|+++......+..    ....++|||
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e   95 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVME   95 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEC
T ss_pred             ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecccHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEe
Confidence            3567776 7899999999999977 57899999975                 46777777666654    677899999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC---CCcEEEeecCCccccC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS---NLEAFVADFGTVRLLD  275 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~---~~~~kl~DfGla~~~~  275 (412)
                      |+++|+|.+++..... ..+++..+..++.|++.||+|||++   +|+||||||+||+++.   ++.+||+|||+++...
T Consensus        96 ~~~~~~L~~~l~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~  171 (299)
T 3m2w_A           96 CLDGGELFSRIQDRGD-QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  171 (299)
T ss_dssp             CCCSCBHHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECT
T ss_pred             ecCCCcHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEeccccccccc
Confidence            9999999999876432 2589999999999999999999999   9999999999999997   7899999999986432


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                                            +..++.++|||||||++|||+||+.||............   ...........+ ...
T Consensus       172 ----------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~---~~~~~~~~~~~~-~~~  225 (299)
T 3m2w_A          172 ----------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGM---KTRIRMGQYEFP-NPE  225 (299)
T ss_dssp             ----------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCS---CCSSCTTCCSSC-HHH
T ss_pred             ----------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHH---HHHHhhccccCC-chh
Confidence                                  234678999999999999999999999633211100000   000000011100 011


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .......+.+++.+||+.||++|||+.|++++
T Consensus       226 ~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h  257 (299)
T 3m2w_A          226 WSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  257 (299)
T ss_dssp             HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             cccCCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence            11123348899999999999999999999985

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.4e-35  Score=309.68  Aligned_cols=217  Identities=23%  Similarity=0.296  Sum_probs=170.5

Q ss_pred             hcCcccceeeeecCceEEEEEEeC--CCcEEEEEec----------------------cCCccccceEEEecCce-----
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP--DGKVVALKKL----------------------HHSETEDSAFVVYSPQC-----  192 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~--~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~-----  192 (412)
                      .++|++.+.||+|+||.||+|...  +|+.||||.+                      +|+++.....++...+.     
T Consensus        79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~  158 (681)
T 2pzi_A           79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV  158 (681)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence            368999999999999999999875  6899999965                      46777777766665444     


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .|+||||+++++|.+++..     .++|.+++.++.|++.||+|||++   +|+||||||+|||++.+ .+||+|||+++
T Consensus       159 ~~lv~E~~~g~~L~~~~~~-----~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a~  229 (681)
T 2pzi_A          159 GYIVMEYVGGQSLKRSKGQ-----KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVS  229 (681)
T ss_dssp             EEEEEECCCCEECC----C-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTCE
T ss_pred             eEEEEEeCCCCcHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccch
Confidence            7999999999999987754     489999999999999999999999   99999999999999876 89999999998


Q ss_pred             ccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          273 LLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       273 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      .....    ....||+.|+|||++.+.. +.++|||||||++|||++|..||......  .              +... 
T Consensus       230 ~~~~~----~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~--~--------------~~~~-  287 (681)
T 2pzi_A          230 RINSF----GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVD--G--------------LPED-  287 (681)
T ss_dssp             ETTCC----SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECS--S--------------CCTT-
T ss_pred             hcccC----CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCcccccc--c--------------cccc-
Confidence            75433    3457999999999987654 88999999999999999999887632100  0              0000 


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCC-HHHHHHHHhc
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPT-MQRISQELEG  390 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-~~evl~~L~~  390 (412)
                       .........+.+++.+||+.||++||+ ++++...|.+
T Consensus       288 -~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~  325 (681)
T 2pzi_A          288 -DPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTG  325 (681)
T ss_dssp             -CHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             -ccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHH
Confidence             011112234788999999999999995 6666665554

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=1.2e-36  Score=313.90  Aligned_cols=238  Identities=24%  Similarity=0.271  Sum_probs=172.7

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------------cCCccccceEEEec------Cce
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------HHSETEDSAFVVYS------PQC  192 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~~~~~~~~~~~~~~------~~~  192 (412)
                      .++|++.+.||+|+||.||+|.. .+|+.||||.+                      +|+++.....++..      .+.
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~   92 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL   92 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence            36899999999999999999977 46899999965                      45666655554433      677


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCc---EEEeecC
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLE---AFVADFG  269 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~---~kl~DfG  269 (412)
                      .++||||+++|+|.+++........+++..+..++.|++.||+|||+.   +|+||||||+||+++.++.   +||+|||
T Consensus        93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~DFG  169 (676)
T 3qa8_A           93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIIDLG  169 (676)
T ss_dssp             CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred             EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEcccc
Confidence            899999999999999998765444589999999999999999999998   9999999999999986654   9999999


Q ss_pred             CccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCccccccc---ccCC----CCcchhhH
Q 042435          270 TVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSL---SSSS----GPKIMLID  342 (412)
Q Consensus       270 la~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~---~~~~----~~~~~~~~  342 (412)
                      +++...... ......||+.|+|||.+.+..++.++||||||+++|||++|+.||......   ....    .......+
T Consensus       170 ~a~~~~~~~-~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~  248 (676)
T 3qa8_A          170 YAKELDQGE-LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYD  248 (676)
T ss_dssp             CCCBTTSCC-CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCC
T ss_pred             ccccccccc-ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhh
Confidence            998765433 223457999999999999999999999999999999999999998632100   0000    00000000


Q ss_pred             Hhhh-----ccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHH
Q 042435          343 ILYQ-----RLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQR  383 (412)
Q Consensus       343 ~~~~-----~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~e  383 (412)
                      ....     ...+............+.+++.+||+.||++|||+.|
T Consensus       249 ~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~e  294 (676)
T 3qa8_A          249 DLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQ  294 (676)
T ss_dssp             CCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTT
T ss_pred             hhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHH
Confidence            0000     0000000111122345889999999999999999977

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=5.3e-35  Score=275.31  Aligned_cols=211  Identities=13%  Similarity=0.025  Sum_probs=161.0

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||+|... +++.||||.+                        +|+++.....++...+..|+||
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  110 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA  110 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence            57999999999999999999875 5899999976                        4566666677788888999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+++++|.++++..     ....+..+++.|++.||+|||++   +|+||||||+|||++.++.+||+++|        
T Consensus       111 e~~~g~~L~~~l~~~-----~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~--------  174 (286)
T 3uqc_A          111 EWIRGGSLQEVADTS-----PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA--------  174 (286)
T ss_dssp             ECCCEEEHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC--------
T ss_pred             EecCCCCHHHHHhcC-----CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc--------
Confidence            999999999998543     34456788999999999999999   99999999999999999999998554        


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                                  |++|       ++.++|||||||++|||+||+.||.........    .............+ .....
T Consensus       175 ------------~~~~-------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~  230 (286)
T 3uqc_A          175 ------------TMPD-------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGL----APAERDTAGQPIEP-ADIDR  230 (286)
T ss_dssp             ------------CCTT-------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCS----EECCBCTTSCBCCH-HHHCT
T ss_pred             ------------ccCC-------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhh----HHHHHHhccCCCCh-hhccc
Confidence                        3332       578999999999999999999999743211100    00000001111100 00001


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                      .....+.+++.+||+.||++| |+.|+++.|+++...
T Consensus       231 ~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~  266 (286)
T 3uqc_A          231 DIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAV  266 (286)
T ss_dssp             TSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhcc
Confidence            112237899999999999999 999999999987654

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=4e-35  Score=282.20  Aligned_cols=221  Identities=17%  Similarity=0.108  Sum_probs=165.3

Q ss_pred             hcCcccceeeeecCceEEEEEEeCCCcEEEEEeccCCcc--------------------------------------ccc
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSET--------------------------------------EDS  183 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~--------------------------------------~~~  183 (412)
                      .++|++.+.||+|+||+||+|+. +|+.||||+++....                                      ...
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred             cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence            46789999999999999999988 789999998764321                                      111


Q ss_pred             eEEE-----------------e-------------cCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHH
Q 042435          184 AFVV-----------------Y-------------SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHA  233 (412)
Q Consensus       184 ~~~~-----------------~-------------~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~g  233 (412)
                      ..+.                 .             ..+..++||||+++|++.+.+...    .+++..+..++.|++.|
T Consensus        98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~----~~~~~~~~~i~~qi~~a  173 (336)
T 2vuw_A           98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTK----LSSLATAKSILHQLTAS  173 (336)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTT----CCCHHHHHHHHHHHHHH
T ss_pred             cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhc----CCCHHHHHHHHHHHHHH
Confidence            1110                 0             267899999999999877766542    48999999999999999


Q ss_pred             HHHHH-hCCCCCcEEeCCCCCCEEecCCC--------------------cEEEeecCCccccCCCCCCcccccccccccc
Q 042435          234 LSYLH-HDCTPSIVHRDISSNNILLNSNL--------------------EAFVADFGTVRLLDVDSSNRTLQAGTYGYIA  292 (412)
Q Consensus       234 L~~LH-~~~~~~ivHrDlkp~NILl~~~~--------------------~~kl~DfGla~~~~~~~~~~~~~~gt~~y~a  292 (412)
                      |+||| ++   +|+||||||+|||++.++                    .+||+|||+++.....     ...||+.|+|
T Consensus       174 L~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-----~~~gt~~y~a  245 (336)
T 2vuw_A          174 LAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-----IVVFCDVSMD  245 (336)
T ss_dssp             HHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-----EEECCCCTTC
T ss_pred             HHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-----cEEEeecccC
Confidence            99999 88   999999999999999876                    8999999999876432     3479999999


Q ss_pred             cccccCcccCcccccHHHHHH-HHHHHhCCCCcccccccccCCCCcchhhHHhhhcc-C-CccchhhHHHHHHHHHHHHh
Q 042435          293 LELVYTMVVTEKCVIYSFGVV-ALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRL-S-PPINQKIIQDIILVSTIALA  369 (412)
Q Consensus       293 PE~~~~~~~s~ksDv~S~Gvi-l~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~  369 (412)
                      ||++.+.. +.++||||++++ .+++++|..||....+..      ........... . .............+.+++.+
T Consensus       246 PE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~  318 (336)
T 2vuw_A          246 EDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLH------YLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRT  318 (336)
T ss_dssp             SGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHH------HHHHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHH
T ss_pred             hhhhcCCC-ccceehhhhhCCCCcccccccCCCcchhhhh------HHHHhhhhhhccCcccchhhhhhcCHHHHHHHHH
Confidence            99998766 889999998777 778899999986321110      00111111101 1 11112223344568999999


Q ss_pred             cCcCCCCCCCCHHHHH-HH
Q 042435          370 CLRSKPKSRPTMQRIS-QE  387 (412)
Q Consensus       370 Cl~~dP~~RPs~~evl-~~  387 (412)
                      ||+.|     |++|++ ++
T Consensus       319 ~L~~d-----sa~e~l~~H  332 (336)
T 2vuw_A          319 MLNFS-----SATDLLCQH  332 (336)
T ss_dssp             GGGSS-----SHHHHHHHC
T ss_pred             HhccC-----CHHHHHhcC
Confidence            99976     999988 54

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.94  E-value=9e-29  Score=253.73  Aligned_cols=165  Identities=16%  Similarity=0.073  Sum_probs=113.4

Q ss_pred             eeeecCceEEEEEE-eCCCcEEEEEec--------------------------------cCCccccceEEEecCceEEEE
Q 042435          150 CIGTGGYDSVYKAE-LPDGKVVALKKL--------------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       150 ~lG~G~~g~Vy~~~-~~~~~~vAvK~l--------------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ..+.|++|.+..++ ...|+.+|+|.+                                .|+++.+....+.+++..|||
T Consensus       241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV  320 (569)
T 4azs_A          241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV  320 (569)
T ss_dssp             C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred             ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence            35566677666653 345889999966                                355666677778889999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||++||+|.++|....   .++..   +|+.||+.||+|+|++   +||||||||+|||+++++.+||+|||+|+....
T Consensus       321 MEyv~G~~L~d~i~~~~---~l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~  391 (569)
T 4azs_A          321 MEKLPGRLLSDMLAAGE---EIDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQ  391 (569)
T ss_dssp             EECCCSEEHHHHHHTTC---CCCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCCTTEESCC-
T ss_pred             EecCCCCcHHHHHHhCC---CCCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeecccCeeCCC
Confidence            99999999999998654   35543   4899999999999999   999999999999999999999999999997766


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCc
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPG  324 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~  324 (412)
                      ........+||+.|||||++.+ .+..++|+||+|++++++.++..|+
T Consensus       392 ~~~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~~  438 (569)
T 4azs_A          392 DCSWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSNW  438 (569)
T ss_dssp             --CCSHHHHHHHHHHHHHHC------------------CCCCTTHHHH
T ss_pred             CCccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccchh
Confidence            5555566789999999999875 4567899999999988877665443

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.91  E-value=2.2e-25  Score=227.30  Aligned_cols=163  Identities=12%  Similarity=0.142  Sum_probs=127.6

Q ss_pred             ccceeeeecCceEEEEEEeCCCcEEEEEec-----------------------------cCCccccceEEEecCceEEEE
Q 042435          146 HIRYCIGTGGYDSVYKAELPDGKVVALKKL-----------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       146 ~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-----------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ...+.||+|+||.||+|.. .++.+|+|+.                             +|+++......+...+..++|
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV  417 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM  417 (540)
T ss_dssp             ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred             CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence            3456899999999999955 5788888852                             466666555555667778999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++|+|.+++..           +..++.|+++||+|||++   +|+||||||+|||++.  .+||+|||+++....
T Consensus       418 mE~~~ggsL~~~l~~-----------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~  481 (540)
T 3en9_A          418 MSYINGKLAKDVIED-----------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISNL  481 (540)
T ss_dssp             EECCCSEEHHHHSTT-----------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECCC
T ss_pred             EECCCCCCHHHHHHH-----------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECCC
Confidence            999999999998875           457899999999999999   9999999999999998  999999999997654


Q ss_pred             CCCC-------cccccccccccccccccC--cccCcccccHHHHHHHHHHHhCCCCcc
Q 042435          277 DSSN-------RTLQAGTYGYIALELVYT--MVVTEKCVIYSFGVVALEVLMGTHPGE  325 (412)
Q Consensus       277 ~~~~-------~~~~~gt~~y~aPE~~~~--~~~s~ksDv~S~Gvil~elltg~~P~~  325 (412)
                      ....       .....||+.|+|||++..  ..|+..+|+||..+-.++.+.++.+|.
T Consensus       482 ~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~  539 (540)
T 3en9_A          482 DEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV  539 (540)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred             ccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence            3211       134579999999999986  668888999999999998888776653

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.87  E-value=1.5e-22  Score=189.67  Aligned_cols=147  Identities=17%  Similarity=0.151  Sum_probs=112.3

Q ss_pred             HHHHHHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEeccCCcc----------------------------------
Q 042435          135 YENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSET----------------------------------  180 (412)
Q Consensus       135 ~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~----------------------------------  180 (412)
                      +..+......|.+.+.||+|+||.||+|...+|+.||+|.++....                                  
T Consensus        82 l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l  161 (282)
T 1zar_A           82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL  161 (282)
T ss_dssp             HHHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc
Confidence            3445556667888899999999999999888899999999853211                                  


Q ss_pred             --ccceEEEecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec
Q 042435          181 --EDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN  258 (412)
Q Consensus       181 --~~~~~~~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~  258 (412)
                        ..... +.+.+..++||||+++|+|.+ +..         .....++.|++.||+|||+.   +|+||||||+|||++
T Consensus       162 ~~~~v~~-~~~~~~~~lvmE~~~g~~L~~-l~~---------~~~~~i~~qi~~~l~~lH~~---giiHrDlkp~NILl~  227 (282)
T 1zar_A          162 QGLAVPK-VYAWEGNAVLMELIDAKELYR-VRV---------ENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVS  227 (282)
T ss_dssp             TTSSSCC-EEEEETTEEEEECCCCEEGGG-CCC---------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEE
T ss_pred             cCCCcCe-EEeccceEEEEEecCCCcHHH-cch---------hhHHHHHHHHHHHHHHHHHC---CCEeCCCCHHHEEEE
Confidence              11122 223456799999999999988 432         12346999999999999998   999999999999999


Q ss_pred             CCCcEEEeecCCccccCCCCCCcccccccccccccccccC----------cccCcccccHH
Q 042435          259 SNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT----------MVVTEKCVIYS  309 (412)
Q Consensus       259 ~~~~~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~----------~~~s~ksDv~S  309 (412)
                       ++.+||+|||+++.             +..|+|||++..          ..+...+|+|.
T Consensus       228 -~~~vkl~DFG~a~~-------------~~~~~a~e~l~rdv~~i~~~f~~~~~~~~~~~~  274 (282)
T 1zar_A          228 -EEGIWIIDFPQSVE-------------VGEEGWREILERDVRNIITYFSRTYRTEKDINS  274 (282)
T ss_dssp             -TTEEEECCCTTCEE-------------TTSTTHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred             -CCcEEEEECCCCeE-------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCChHH
Confidence             99999999999863             345788988753          34455566654

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.74  E-value=3.4e-18  Score=157.90  Aligned_cols=132  Identities=23%  Similarity=0.210  Sum_probs=92.5

Q ss_pred             HHHHHhhcCcccceeeeecCceEEEEEEe-CCCcE--EEEEeccCCccccc-------------------------eE--
Q 042435          136 ENLIDATEYFHIRYCIGTGGYDSVYKAEL-PDGKV--VALKKLHHSETEDS-------------------------AF--  185 (412)
Q Consensus       136 ~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~--vAvK~l~~~~~~~~-------------------------~~--  185 (412)
                      ..+.....-|++.+.||+|+||.||+|.. .+|+.  ||||.++.......                         ..  
T Consensus        40 ~~~~~~~~~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (258)
T 1zth_A           40 YKLSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEK  119 (258)
T ss_dssp             HHHHHTTSEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHH
T ss_pred             HHHHhCCCchhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHH
Confidence            33333333467889999999999999988 78989  99998643211000                         00  


Q ss_pred             ------------E----EecCceEEEEEEeccC-CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHH-hCCCCCcEE
Q 042435          186 ------------V----VYSPQCMFFIYEYMER-GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH-HDCTPSIVH  247 (412)
Q Consensus       186 ------------~----~~~~~~~~lv~ey~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH-~~~~~~ivH  247 (412)
                                  +    .......++||||+.+ |.+...+.....  ..++.....++.|++.||.||| +.   +|+|
T Consensus       120 E~~~l~~l~~~~i~~p~~~~~~~~~lVmE~~g~~g~~~~~L~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~~---givH  194 (258)
T 1zth_A          120 EFRNLERAKEAGVSVPQPYTYMKNVLLMEFIGEDELPAPTLVELGR--ELKELDVEGIFNDVVENVKRLYQEA---ELVH  194 (258)
T ss_dssp             HHHHHHHHHHTTCCCCCEEEEETTEEEEECCEETTEECCBHHHHGG--GGGGSCHHHHHHHHHHHHHHHHHTS---CEEC
T ss_pred             HHHHHHHHHhCCCCCCeEEEcCCCEEEEEecCCCCCccccHHHHhh--ccChHHHHHHHHHHHHHHHHHHHHC---CEEe
Confidence                        0    1112345899999952 544333332111  1234466789999999999999 87   9999


Q ss_pred             eCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          248 RDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       248 rDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      |||||+|||++.  .++|+|||+|...
T Consensus       195 rDlkp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          195 ADLSEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             SSCSTTSEEESS--SEEECCCTTCEET
T ss_pred             CCCCHHHEEEcC--cEEEEECcccccC
Confidence            999999999998  9999999999754

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.66  E-value=1.9e-16  Score=152.97  Aligned_cols=124  Identities=12%  Similarity=0.125  Sum_probs=91.4

Q ss_pred             HHHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEeccCCccc-----cceEE--------------------------
Q 042435          138 LIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETE-----DSAFV--------------------------  186 (412)
Q Consensus       138 l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~-----~~~~~--------------------------  186 (412)
                      +..-..-|++...||+|+||.||+|...+|+.||||.++.....     .....                          
T Consensus        90 L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~r  169 (397)
T 4gyi_A           90 HAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKA  169 (397)
T ss_dssp             HHHTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence            33333449999999999999999999999999999987532110     00000                          


Q ss_pred             ----------EecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEE
Q 042435          187 ----------VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNIL  256 (412)
Q Consensus       187 ----------~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NIL  256 (412)
                                .......+|||||+++++|.++....         ....++.|++.+|.|||++   +||||||||.|||
T Consensus       170 L~~~gv~vp~p~~~~~~~LVME~i~G~~L~~l~~~~---------~~~~l~~qll~~l~~lH~~---gIVHrDLKp~NIL  237 (397)
T 4gyi_A          170 LYEEGFPVPEPIAQSRHTIVMSLVDALPMRQVSSVP---------DPASLYADLIALILRLAKH---GLIHGDFNEFNIL  237 (397)
T ss_dssp             HHHTTCSCCCEEEEETTEEEEECCSCEEGGGCCCCS---------CHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEE
T ss_pred             HHhcCCCCCeeeeccCceEEEEecCCccHhhhcccH---------HHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEE
Confidence                      00111236999999988887654321         2345789999999999998   9999999999999


Q ss_pred             ecCCC----------cEEEeecCCccc
Q 042435          257 LNSNL----------EAFVADFGTVRL  273 (412)
Q Consensus       257 l~~~~----------~~kl~DfGla~~  273 (412)
                      +++++          .+.|+||+-+-.
T Consensus       238 l~~dgd~~d~~~~~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          238 IREEKDAEDPSSITLTPIIIXFPQMVS  264 (397)
T ss_dssp             EEEEECSSCTTSEEEEEEECCCTTCEE
T ss_pred             EeCCCCcccccccccceEEEEeCCccc
Confidence            98766          389999987653

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.96  E-value=2.2e-09  Score=98.50  Aligned_cols=127  Identities=13%  Similarity=0.036  Sum_probs=92.7

Q ss_pred             HHHHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEeccCC----------------------ccccceEEEecCceEE
Q 042435          137 NLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHS----------------------ETEDSAFVVYSPQCMF  194 (412)
Q Consensus       137 ~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~----------------------~~~~~~~~~~~~~~~~  194 (412)
                      .+....++|++...++.|+.+.||++... ++.+++|.....                      ............+..|
T Consensus         8 ~l~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~   86 (263)
T 3tm0_A            8 ELKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSN   86 (263)
T ss_dssp             HHHHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEE
T ss_pred             HHHHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceE
Confidence            34455677888888999999999999864 688999986531                      1111223345567889


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCC---------------------------------
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC---------------------------------  241 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~---------------------------------  241 (412)
                      +||||++|.+|.+.+..        ......++.+++++|+.||+..                                 
T Consensus        87 lv~e~i~G~~l~~~~~~--------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (263)
T 3tm0_A           87 LLMSEADGVLCSEEYED--------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENW  158 (263)
T ss_dssp             EEEECCSSEEHHHHCCT--------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGG
T ss_pred             EEEEecCCeehhhccCC--------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccc
Confidence            99999999888764321        1223467899999999999810                                 


Q ss_pred             -----------------------CCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          242 -----------------------TPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       242 -----------------------~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                                             .+.++|+|++|.||+++++....|+||+.+.
T Consensus       159 ~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          159 EEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             STTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             cccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence                                   1358999999999999876556799998764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.94  E-value=2.2e-10  Score=121.61  Aligned_cols=67  Identities=31%  Similarity=0.492  Sum_probs=59.6

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC-CCcCC-CCcccccCcCCCCCCCCCCcccc
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT-YLRDN-PPKSFVGNKGLCGHVQGFLSCFQ   71 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~-~~~~~-~~~~~~gn~~lcg~~~~~~~c~~   71 (412)
                      ..|++||||+| ++|.||. +.++++|+.||||+|+|+|+||. +.|.. +..+|.||++|||.+..  +|..
T Consensus       680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~--~C~~  750 (768)
T 3rgz_A          680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP--RCDP  750 (768)
T ss_dssp             TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC--CCCS
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc--CCCC
Confidence            46899999999 9999988 88999999999999999999998 56777 88999999999998864  7864

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.84  E-value=5.9e-09  Score=95.11  Aligned_cols=124  Identities=15%  Similarity=0.077  Sum_probs=84.9

Q ss_pred             HHHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEeccCCc--------------------cccceEEEecCceEEEEE
Q 042435          138 LIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSE--------------------TEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       138 l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~--------------------~~~~~~~~~~~~~~~lv~  197 (412)
                      +.+...++.+..+.+.|..+.||++...+|+.+++|......                    ..........++..++||
T Consensus        15 l~~~~~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~   94 (264)
T 1nd4_A           15 WVERLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLL   94 (264)
T ss_dssp             GTTTTTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCTTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEE
T ss_pred             HHHhcCCCceEecccCCCCceEEEEecCCCCeEEEEeCCcccchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEE
Confidence            334445566544444666799999988778889999754321                    111222344456689999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCC------------------------------------
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC------------------------------------  241 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~------------------------------------  241 (412)
                      ||++|.+|.  ...      .+   ...++.++++.|+.||+..                                    
T Consensus        95 e~i~G~~l~--~~~------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (264)
T 1nd4_A           95 GEVPGQDLL--SSH------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQ  163 (264)
T ss_dssp             ECCSSEETT--TSC------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGT
T ss_pred             EecCCcccC--cCc------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhcc
Confidence            999998874  211      11   1256778888888888642                                    


Q ss_pred             -------------------CCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          242 -------------------TPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       242 -------------------~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                                         ...++|+|++|.||+++++..+.|+||+.+.
T Consensus       164 ~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~  213 (264)
T 1nd4_A          164 GLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG  213 (264)
T ss_dssp             TCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             CccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence                               1139999999999999877666799999875

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.68  E-value=8.6e-08  Score=92.12  Aligned_cols=120  Identities=17%  Similarity=0.200  Sum_probs=86.0

Q ss_pred             ceeeeecCceEEEEEEeCCCcEEEEEecc--CCcc------------------------ccceEEEecC---ceEEEEEE
Q 042435          148 RYCIGTGGYDSVYKAELPDGKVVALKKLH--HSET------------------------EDSAFVVYSP---QCMFFIYE  198 (412)
Q Consensus       148 ~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~--~~~~------------------------~~~~~~~~~~---~~~~lv~e  198 (412)
                      .+.|+.|.++.||+....+ ..+++|+..  ....                        ......+.+.   +..++|||
T Consensus        43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme  121 (359)
T 3dxp_A           43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME  121 (359)
T ss_dssp             EEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred             EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence            4678999999999998754 678888775  2210                        0111123333   34789999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCC-------------------------------------
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC-------------------------------------  241 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~-------------------------------------  241 (412)
                      |+++..+.+...     ..++..++..++.++++.|+.||+..                                     
T Consensus       122 ~v~G~~l~~~~~-----~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (359)
T 3dxp_A          122 FVSGRVLWDQSL-----PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPA  196 (359)
T ss_dssp             CCCCBCCCCTTC-----TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHH
T ss_pred             ecCCeecCCCcc-----ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChH
Confidence            999887754211     13677888899999999999999731                                     


Q ss_pred             ------------------CCCcEEeCCCCCCEEecCCCc--EEEeecCCccc
Q 042435          242 ------------------TPSIVHRDISSNNILLNSNLE--AFVADFGTVRL  273 (412)
Q Consensus       242 ------------------~~~ivHrDlkp~NILl~~~~~--~kl~DfGla~~  273 (412)
                                        .+.++|+|+++.||+++.++.  +.|+||+.+..
T Consensus       197 ~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          197 MDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             HHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             HHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                              247999999999999987653  68999998864

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.42  E-value=7.7e-08  Score=90.26  Aligned_cols=166  Identities=21%  Similarity=0.174  Sum_probs=102.8

Q ss_pred             eeeeecCceEEEEEEeCCCcEEEEEeccCC--------------------ccccceEEEe--cCc---eEEEEEEeccCC
Q 042435          149 YCIGTGGYDSVYKAELPDGKVVALKKLHHS--------------------ETEDSAFVVY--SPQ---CMFFIYEYMERG  203 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~--------------------~~~~~~~~~~--~~~---~~~lv~ey~~~g  203 (412)
                      +.++.|....||+..    ..+++|.....                    .+........  ..+   ..|+||||++|.
T Consensus        26 ~~~~~G~~n~v~~v~----~~~vlR~~~~~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G~  101 (304)
T 3sg8_A           26 EISGEGNDCIAYEIN----RDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGV  101 (304)
T ss_dssp             CEEEECSSEEEEEST----TSEEEEEESSHHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCCE
T ss_pred             EecCCCCcceEEEEC----CEEEEEecCCcchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCCe
Confidence            568999999999864    45778864321                    1100011111  122   348899999988


Q ss_pred             ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCC------------------------------------------
Q 042435          204 SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC------------------------------------------  241 (412)
Q Consensus       204 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~------------------------------------------  241 (412)
                      +|.+...     ..++..++..++.++++.|+.||+..                                          
T Consensus       102 ~l~~~~~-----~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  176 (304)
T 3sg8_A          102 PLTPLLL-----NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDF  176 (304)
T ss_dssp             ECCHHHH-----HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             ECCcccc-----ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHH
Confidence            7754221     13677778888999999999988621                                          


Q ss_pred             -------------CCCcEEeCCCCCCEEecC--CCcEEEeecCCccccCCCCCCc--cc------------ccccccccc
Q 042435          242 -------------TPSIVHRDISSNNILLNS--NLEAFVADFGTVRLLDVDSSNR--TL------------QAGTYGYIA  292 (412)
Q Consensus       242 -------------~~~ivHrDlkp~NILl~~--~~~~kl~DfGla~~~~~~~~~~--~~------------~~gt~~y~a  292 (412)
                                   .+.++|+|++|.||++++  ...+.|+||+.+..-.....-.  ..            .....+...
T Consensus       177 ~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~  256 (304)
T 3sg8_A          177 YRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKD  256 (304)
T ss_dssp             HHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCSC
T ss_pred             HHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCCC
Confidence                         135799999999999987  4567899999886532210000  00            000001111


Q ss_pred             -cccccCcccCcccccHHHHHHHHHHHhCCCCcc
Q 042435          293 -LELVYTMVVTEKCVIYSFGVVALEVLMGTHPGE  325 (412)
Q Consensus       293 -PE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~  325 (412)
                       |+....  .....+.|+++.++|.+.+|..+|-
T Consensus       257 ~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~~  288 (304)
T 3sg8_A          257 IPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDWY  288 (304)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHHH
Confidence             222111  1123589999999999999987754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.25  E-value=3.4e-07  Score=86.27  Aligned_cols=65  Identities=28%  Similarity=0.365  Sum_probs=54.9

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCC-CcCC-CCcccccCcCCCCCCCCCCcc
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTY-LRDN-PPKSFVGNKGLCGHVQGFLSC   69 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~-~~~~-~~~~~~gn~~lcg~~~~~~~c   69 (412)
                      ..|++|||+.| ++|.+|. +.++++|+.||+|+|+|+|.+|.. .+.+ ....+.+|+.+||.|..  .|
T Consensus       244 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~--~C  312 (313)
T 1ogq_A          244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP--AC  312 (313)
T ss_dssp             TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS--CC
T ss_pred             CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC--CC
Confidence            46889999999 9999988 889999999999999999999983 3444 66778899999998753  46

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.51  E-value=0.00054  Score=63.95  Aligned_cols=117  Identities=16%  Similarity=0.121  Sum_probs=73.3

Q ss_pred             ceeeeecCceEEEEEEeCCCcEEEEEeccCC--------------------c--cccceEEE-ecCceEEEEEEeccCCc
Q 042435          148 RYCIGTGGYDSVYKAELPDGKVVALKKLHHS--------------------E--TEDSAFVV-YSPQCMFFIYEYMERGS  204 (412)
Q Consensus       148 ~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~--------------------~--~~~~~~~~-~~~~~~~lv~ey~~~gs  204 (412)
                      .+.++.|....||+.    |..+++|.-+..                    .  +....... ...+..++||||++|.+
T Consensus        24 v~~l~~G~~n~v~~v----g~~~VlR~~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~~   99 (306)
T 3tdw_A           24 VESLGEGFRNYAILV----NGDWVFRFPKSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQI   99 (306)
T ss_dssp             EEEEEECSSEEEEEE----TTTEEEEEESSHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSEE
T ss_pred             eeecCCCcceeEEEE----CCEEEEEecCCchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCeE
Confidence            356888999999998    566778864221                    0  11111122 23445789999999877


Q ss_pred             eeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhC--------------------------------------------
Q 042435          205 LFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHD--------------------------------------------  240 (412)
Q Consensus       205 L~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~--------------------------------------------  240 (412)
                      +.+....     .++..++..++.++++.|+.||+.                                            
T Consensus       100 l~~~~~~-----~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  174 (306)
T 3tdw_A          100 LGEDGMA-----VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTL  174 (306)
T ss_dssp             CHHHHHT-----TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred             Cchhhhh-----hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence            7542110     133444445555555555555542                                            


Q ss_pred             -------------CCCCcEEeCCCCCCEEecC---CCcE-EEeecCCccc
Q 042435          241 -------------CTPSIVHRDISSNNILLNS---NLEA-FVADFGTVRL  273 (412)
Q Consensus       241 -------------~~~~ivHrDlkp~NILl~~---~~~~-kl~DfGla~~  273 (412)
                                   ..+.++|+|++|.||+++.   ++.+ .|+||+.+..
T Consensus       175 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          175 RFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             HHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             HHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence                         2335699999999999987   4554 7999998763

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.41  E-value=4.1e-05  Score=80.98  Aligned_cols=40  Identities=28%  Similarity=0.490  Sum_probs=20.8

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++||||.| ++|.||. ++++++|+.||+|+|+|+|.||.
T Consensus       633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~  674 (768)
T 3rgz_A          633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD  674 (768)
T ss_dssp             CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence            3445555555 5555544 44555555555555555555554

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.39  E-value=0.00073  Score=61.50  Aligned_cols=126  Identities=18%  Similarity=0.158  Sum_probs=79.2

Q ss_pred             HHhhcCcccceeeeecCce-EEEEEEeC-CCcEEEEEeccCC-------------------ccccceEEEecCceEEEEE
Q 042435          139 IDATEYFHIRYCIGTGGYD-SVYKAELP-DGKVVALKKLHHS-------------------ETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       139 ~~~~~~f~~~~~lG~G~~g-~Vy~~~~~-~~~~vAvK~l~~~-------------------~~~~~~~~~~~~~~~~lv~  197 (412)
                      .....+|+. +.+..|..| .||+.... ++..+++|+-...                   -+.+....+...+..++||
T Consensus        21 ~~~l~g~~~-~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvm   99 (272)
T 4gkh_A           21 DADLYGYRW-ARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLT   99 (272)
T ss_dssp             HHHHTTCEE-EEEECSSSSCEEEEEECCTTCCCEEEEEEETHHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEE
T ss_pred             hccccCCeE-EEccCCCcCCeEEEEEecCCCeEEEEEECCCCCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEE
Confidence            333444544 345556655 69998764 4667888864211                   1222334456678899999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCC------------------------------------
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC------------------------------------  241 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~------------------------------------  241 (412)
                      |++++.++.+.....       ......+..+++..|+-||...                                    
T Consensus       100 e~l~G~~~~~~~~~~-------~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (272)
T 4gkh_A          100 TAIPGKTAFQVLEEY-------PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERN  172 (272)
T ss_dssp             ECCCSEEHHHHHHHC-------GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGT
T ss_pred             EeeCCccccccccCC-------HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhcccccc
Confidence            999987765433211       1122345555666666666421                                    


Q ss_pred             -------------------CCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          242 -------------------TPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       242 -------------------~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                                         .+.++|+|+.+.||+++++..+-|+||+.+.
T Consensus       173 ~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~  222 (272)
T 4gkh_A          173 GWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG  222 (272)
T ss_dssp             TCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             chHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence                               1137999999999999987767799998775

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.35  E-value=0.00057  Score=65.01  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=25.8

Q ss_pred             CCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          242 TPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       242 ~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .+.++|+|+.+.||+++++..+.|+||+.+.
T Consensus       221 ~~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~  251 (357)
T 3ats_A          221 EPVLLWGDARVGNVLYRDFQPVAVLDWEMVA  251 (357)
T ss_dssp             CCEEECSSCSGGGEEEETTEEEEECCGGGCE
T ss_pred             CceEEeCCCCCCeEEEeCCcEEEEEcccccc
Confidence            3579999999999999964457899998775

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.30  E-value=0.00024  Score=66.91  Aligned_cols=31  Identities=35%  Similarity=0.635  Sum_probs=27.6

Q ss_pred             CCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          242 TPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       242 ~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      ...++|+|+++.||+++.+..+.|+||+.+.
T Consensus       221 ~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             SCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             cCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            4589999999999999877889999999775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.27  E-value=0.00019  Score=62.07  Aligned_cols=40  Identities=10%  Similarity=0.095  Sum_probs=28.7

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|+|+.| ++|.+|. +.++++|+.||+|+|+|++..|.
T Consensus        55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~   96 (192)
T 1w8a_A           55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK   96 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred             CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH
Confidence            4677777777 7777665 66777777777777777776664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.11  E-value=0.00031  Score=66.61  Aligned_cols=40  Identities=13%  Similarity=-0.057  Sum_probs=29.8

Q ss_pred             echhhccCC-C-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISA-A-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~-~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|+.|+|+. | +++..|. +.++++|+.||||+|+|+|..|.
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~   74 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD   74 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH
Confidence            477788875 7 7776654 77788888888888888886664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.10  E-value=0.00036  Score=59.10  Aligned_cols=39  Identities=10%  Similarity=-0.020  Sum_probs=28.7

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      .|++|+|+.| +++..|. +.++++|+.||||+|+|++-.|
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~   71 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA   71 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh
Confidence            4677888888 7777766 6778888888888888875433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.09  E-value=0.00022  Score=76.27  Aligned_cols=54  Identities=20%  Similarity=0.166  Sum_probs=26.7

Q ss_pred             chhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCCCCcCC-CCcccccCcCCC
Q 042435            5 LAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPTYLRDN-PPKSFVGNKGLC   60 (412)
Q Consensus         5 ~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~~~~~~-~~~~~~gn~~lc   60 (412)
                      |+.||||.| +++..|.... ++|+.||||+|+|+|.+|.. +.+ ....+.+|+-.|
T Consensus       506 L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~-~~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          506 LRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDV-FVSLSVLDITHNKFIC  561 (844)
T ss_dssp             CSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCC-CSSCCEEEEEEECCCC
T ss_pred             hheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhH-hCCcCEEEecCCCccc
Confidence            444444444 4443333111 44555555555555555542 233 444566788777

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.02  E-value=0.00015  Score=62.83  Aligned_cols=58  Identities=9%  Similarity=0.090  Sum_probs=43.5

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCCC--cCC-CCcccccCcCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTYL--RDN-PPKSFVGNKGLC   60 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~~--~~~-~~~~~~gn~~lc   60 (412)
                      ..|++|+|+.| +++..|. +.++++|+.||+|+|+++|.+|..+  +.+ ..-.+.+|+--|
T Consensus        78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            46889999999 9998877 7889999999999999999888632  222 333444565444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.99  E-value=0.00043  Score=61.30  Aligned_cols=40  Identities=8%  Similarity=-0.086  Sum_probs=27.1

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|+|+.| +++..|. +.++++|+.||+|+|++++..|.
T Consensus        82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  123 (220)
T 2v70_A           82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND  123 (220)
T ss_dssp             TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT
T ss_pred             CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh
Confidence            4667777777 6666655 56677777777777777766664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.87  E-value=0.00074  Score=57.41  Aligned_cols=40  Identities=15%  Similarity=0.005  Sum_probs=31.9

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      .|++|+|+.| +++.+|. +.++++|+.||||+|+|++ +|..
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~   75 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTG   75 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTT
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChh
Confidence            4778888888 8887776 7788888888888888887 4543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.82  E-value=0.00077  Score=57.33  Aligned_cols=40  Identities=15%  Similarity=0.075  Sum_probs=29.6

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      ..|++|||+.| +++..|. +.++++|+.||||+|+|++-.|
T Consensus        57 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~   98 (174)
T 2r9u_A           57 VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR   98 (174)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCH
Confidence            45788888888 7775555 5778888888888888885433

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=96.77  E-value=0.0028  Score=61.28  Aligned_cols=31  Identities=19%  Similarity=0.303  Sum_probs=26.1

Q ss_pred             CCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       242 ~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      .+.++|+|+.|.||+++.+ .++++||..+..
T Consensus       226 ~~~L~HGDl~~~Nil~~~~-~~~lID~e~a~~  256 (397)
T 2olc_A          226 AETLIHGDLHTGSIFASEH-ETKVIDPEFAFY  256 (397)
T ss_dssp             CCEEECSCCSGGGEEECSS-CEEECCCTTCEE
T ss_pred             CCceeeCCCCcCcEEEeCC-CeEEEeCccccc
Confidence            3479999999999999865 489999987764

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=96.73  E-value=0.0018  Score=59.65  Aligned_cols=32  Identities=25%  Similarity=0.251  Sum_probs=27.6

Q ss_pred             cccceeeeecCceEEEEEEeCCCcEEEEEecc
Q 042435          145 FHIRYCIGTGGYDSVYKAELPDGKVVALKKLH  176 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~  176 (412)
                      ....+.+|.|..+.||+.+..||+.|.+|+-.
T Consensus        17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~   48 (288)
T 3f7w_A           17 VAAVAERGHSHRWHLYRVELADGTPLFVKALP   48 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTSCEEEEEECC
T ss_pred             eEEEEecCCCCCeEEEEEEECCCCEEEEEEeC
Confidence            44457799999999999999999999999754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.69  E-value=0.0011  Score=57.47  Aligned_cols=41  Identities=20%  Similarity=0.234  Sum_probs=31.3

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|||+.| +++..|. +.++++|+.||+|+|++++-.|.
T Consensus        54 ~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~   96 (193)
T 2wfh_A           54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR   96 (193)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHH
Confidence            35778888888 7776655 77888888888888888876664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.66  E-value=0.001  Score=58.77  Aligned_cols=41  Identities=10%  Similarity=-0.091  Sum_probs=30.5

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|||+.| +++..+. +.++++|+.||+++|++++..|.
T Consensus        80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~  122 (220)
T 2v9t_B           80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD  122 (220)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH
Confidence            45788888888 7744444 57788888888888888877665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.63  E-value=0.00046  Score=68.88  Aligned_cols=40  Identities=20%  Similarity=0.097  Sum_probs=27.2

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|||+.| ++|. |....+++|..||||+|+|+|..|.
T Consensus       169 ~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~  209 (487)
T 3oja_A          169 DTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFMGPE  209 (487)
T ss_dssp             TTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCEECGG
T ss_pred             CcccEEecCCCccccc-cccccCCCCCEEECCCCCCCCCCHh
Confidence            35677777777 6666 4444577777777777777775443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=96.58  E-value=0.00065  Score=63.52  Aligned_cols=42  Identities=26%  Similarity=0.506  Sum_probs=36.5

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      ..|++|+|+.| ++|.+|. +.++++|+.||+|+|.++|.+|..
T Consensus       101 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  144 (313)
T 1ogq_A          101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             CCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence            45889999999 9999987 788999999999999999999863

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.54  E-value=0.0012  Score=67.34  Aligned_cols=40  Identities=25%  Similarity=0.137  Sum_probs=26.5

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++||||.| +++.+|. +.++++|+.||||+|+|++-.|.
T Consensus       495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~  536 (635)
T 4g8a_A          495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF  536 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCG
T ss_pred             ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChh
Confidence            4666777777 7766665 56667777777777777665553

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=96.52  E-value=0.017  Score=53.95  Aligned_cols=120  Identities=15%  Similarity=0.166  Sum_probs=71.7

Q ss_pred             ceeeeecCceEEEEEEeCCCcEEEEEeccCC---------------------ccccceEEEecCceEEEEEEeccCCcee
Q 042435          148 RYCIGTGGYDSVYKAELPDGKVVALKKLHHS---------------------ETEDSAFVVYSPQCMFFIYEYMERGSLF  206 (412)
Q Consensus       148 ~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~---------------------~~~~~~~~~~~~~~~~lv~ey~~~gsL~  206 (412)
                      .+.|+.|....+|+... ++..+++|.....                     ...+........+..++||||+++..+.
T Consensus        41 ~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~~~~  119 (312)
T 3jr1_A           41 KEKLYSGEMNEIWLIND-EVQTVFVKINERSYRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKSKNK  119 (312)
T ss_dssp             EEEECCSSSSEEEEEES-SSCEEEEEEEEGGGHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCCCCC
T ss_pred             eEEeCCccceeeeEEEE-CCCeEEEEeCCcccHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCCCCC
Confidence            46789999999999987 5678888964321                     1112222344556789999999987653


Q ss_pred             e-----------eeccCcc-------------------cccCCHHHHH---HHHH----------------HHHHHH-HH
Q 042435          207 C-----------VLRDDDE-------------------AIELNWTRRM---NIVK----------------SVAHAL-SY  236 (412)
Q Consensus       207 ~-----------~l~~~~~-------------------~~~l~~~~~~---~i~~----------------~ia~gL-~~  236 (412)
                      .           .|+....                   ...-+|....   ++..                .+...+ ..
T Consensus       120 ~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~l~~~  199 (312)
T 3jr1_A          120 QSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIVADT  199 (312)
T ss_dssp             TTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            1           1111100                   0012565422   1111                111111 23


Q ss_pred             HHh-CCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          237 LHH-DCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       237 LH~-~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      |.. ...+.++|+|+.+.|++++.++ +.|.|+.
T Consensus       200 L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~  232 (312)
T 3jr1_A          200 LSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA  232 (312)
T ss_dssp             HTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred             hccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence            321 2356899999999999999876 8899973

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.44  E-value=0.0023  Score=54.13  Aligned_cols=41  Identities=15%  Similarity=0.005  Sum_probs=33.1

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|+|+.| +++..|. +.++++|+.||+|+|++++..|.
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~   94 (177)
T 2o6r_A           52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNG   94 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHH
Confidence            46889999999 8866655 67899999999999999976554

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=96.43  E-value=0.0063  Score=56.71  Aligned_cols=139  Identities=13%  Similarity=0.124  Sum_probs=76.5

Q ss_pred             ccHHHHHHhhcCccc-----ceeeeecCceEEEEEEeCCCcEEEEEeccCC-ccccc-----------------eEE---
Q 042435          133 ILYENLIDATEYFHI-----RYCIGTGGYDSVYKAELPDGKVVALKKLHHS-ETEDS-----------------AFV---  186 (412)
Q Consensus       133 ~~~~~l~~~~~~f~~-----~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~-~~~~~-----------------~~~---  186 (412)
                      ++.+++......|.+     .+.|+.|....+|+....+| .+++|..... .....                 ...   
T Consensus         7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~~~~~l~~e~~~l~~L~~~g~~vP~~~~~   85 (322)
T 2ppq_A            7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRVEKNDLPFFLGLMQHLAAKGLSCPLPLPR   85 (322)
T ss_dssp             CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC---CCHHHHHHHHHHHHHHTTCCCCCBCCB
T ss_pred             CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCCCCcccCC
Confidence            455666666666655     23566788899999988666 5778876541 10000                 000   


Q ss_pred             ------EecCceEEEEEEeccCCceeee--------------eccC----ccc-----ccCCHHHHHH------------
Q 042435          187 ------VYSPQCMFFIYEYMERGSLFCV--------------LRDD----DEA-----IELNWTRRMN------------  225 (412)
Q Consensus       187 ------~~~~~~~~lv~ey~~~gsL~~~--------------l~~~----~~~-----~~l~~~~~~~------------  225 (412)
                            ....+..+++++|++|..+...              ++..    ...     ....|.....            
T Consensus        86 ~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  165 (322)
T 2ppq_A           86 KDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKG  165 (322)
T ss_dssp             TTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTT
T ss_pred             CCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhhh
Confidence                  1113456899999988655321              1110    000     0012332111            


Q ss_pred             HHHHHHHHHHHHHhC----CCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          226 IVKSVAHALSYLHHD----CTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       226 i~~~ia~gL~~LH~~----~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      +...+...+++++..    ....++|+|+.+.||+++++....++||+.+.
T Consensus       166 l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          166 LREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             HHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             hHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            011244456666532    13479999999999999877556799998765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=96.42  E-value=0.0012  Score=62.22  Aligned_cols=42  Identities=7%  Similarity=-0.141  Sum_probs=37.5

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      ..|++|+|+.| +.|.+|. +.++++|+.|++++|++.|.+|..
T Consensus       229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~  272 (328)
T 4fcg_A          229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD  272 (328)
T ss_dssp             TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred             CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh
Confidence            46889999998 9999987 789999999999999999999974

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.39  E-value=0.0025  Score=53.74  Aligned_cols=58  Identities=10%  Similarity=0.014  Sum_probs=40.5

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCCC--cCC-CCcccccCcCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTYL--RDN-PPKSFVGNKGLC   60 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~~--~~~-~~~~~~gn~~lc   60 (412)
                      ..|++|||+.| +++..|. +.++++|+.||||+|+|++-.|..+  +.+ ..-.+.+|+--|
T Consensus        54 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           54 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             ccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            46889999999 8876666 5789999999999999987555321  122 334445665555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.25  E-value=0.0016  Score=66.19  Aligned_cols=37  Identities=16%  Similarity=0.145  Sum_probs=24.7

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      .|++||||.| ++ .||. +.++++|+.||||+|+|+| ||
T Consensus       464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp  502 (567)
T 1dce_A          464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD  502 (567)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG
T ss_pred             cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc
Confidence            4666777777 66 5655 6666777777777777766 56

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=96.23  E-value=0.0032  Score=58.56  Aligned_cols=43  Identities=23%  Similarity=0.354  Sum_probs=29.8

Q ss_pred             eechhhccCCC-ceeeCCC-CCCC---CCCCEEeCccccccccCCCCCc
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSS---PSFLKSDMSFNNLDGEIPTYLR   46 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~---~~l~~~~ls~N~l~G~iP~~~~   46 (412)
                      ..|++||||+| +++.+|+ +..+   ++|+.||+|+|+|+ .||..++
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~  271 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP  271 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc
Confidence            45777888888 7777654 4444   57888888888887 6776444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=96.21  E-value=0.0033  Score=56.49  Aligned_cols=40  Identities=10%  Similarity=0.011  Sum_probs=28.0

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      ..|++|+|+.| +++..|. +.++++|+.|++|+|+|++-.|
T Consensus       107 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  148 (251)
T 3m19_A          107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA  148 (251)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence            35777788877 7755555 5677777888888887775444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=96.20  E-value=0.0031  Score=59.28  Aligned_cols=42  Identities=17%  Similarity=0.049  Sum_probs=36.2

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCCC
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      ..|++|+|+.| ++|..+.+.++++|+.||+|+|++.|.+|..
T Consensus       206 ~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~  248 (328)
T 4fcg_A          206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI  248 (328)
T ss_dssp             TTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred             CCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHH
Confidence            46889999999 8875555889999999999999999999974

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=96.20  E-value=0.0039  Score=56.79  Aligned_cols=41  Identities=15%  Similarity=0.211  Sum_probs=29.7

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|+|+.| +++..|. +.++++|+.||+|+|++++..|.
T Consensus       133 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  175 (272)
T 3rfs_A          133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG  175 (272)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence            35778888888 7766655 57788888888888888865553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.19  E-value=0.0029  Score=59.79  Aligned_cols=45  Identities=20%  Similarity=0.199  Sum_probs=38.0

Q ss_pred             ceechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCCCcC
Q 042435            2 IVLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTYLRD   47 (412)
Q Consensus         2 ~~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~~~~   47 (412)
                      +..|+.|||+.| ++|.+|. +.++++|+.||||+|+|++ +|...|.
T Consensus        55 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~  101 (347)
T 2ifg_A           55 LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQ  101 (347)
T ss_dssp             CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTC
T ss_pred             ccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcc
Confidence            457999999999 9999987 7899999999999999996 5544343

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.16  E-value=0.0037  Score=53.93  Aligned_cols=37  Identities=14%  Similarity=0.099  Sum_probs=21.4

Q ss_pred             chhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCC
Q 042435            5 LAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         5 ~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      |++|+|+.| ++ .||. +.++++|+.||+|+|++++-.|
T Consensus        33 l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~   71 (193)
T 2wfh_A           33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSN   71 (193)
T ss_dssp             CCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCT
T ss_pred             CCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCH
Confidence            556666666 44 4443 5556666666666666665443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.13  E-value=0.0037  Score=55.14  Aligned_cols=40  Identities=10%  Similarity=0.101  Sum_probs=31.6

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|+.|+|+.| +++..|. +.++++|+.||+|+|++++-.|.
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~   74 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD   74 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH
Confidence            4778888888 7776664 77888888888888888887775

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=96.11  E-value=0.0037  Score=57.68  Aligned_cols=43  Identities=23%  Similarity=0.217  Sum_probs=30.3

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCCCc
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTYLR   46 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~~~   46 (412)
                      ..|++|+|+.| +++..|. +.++++|+.||+++|+|+ .+|...|
T Consensus       124 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~  168 (290)
T 1p9a_G          124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLL  168 (290)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTT
T ss_pred             CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccCHHHh
Confidence            35778888888 7765555 567888888888888887 4554333

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=96.10  E-value=0.0031  Score=56.01  Aligned_cols=41  Identities=17%  Similarity=0.129  Sum_probs=34.7

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      ..|++|||+.| +++..|. +..+++|+.||+|+|+|+ .||..
T Consensus        88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~  130 (229)
T 3e6j_A           88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRG  130 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTT
T ss_pred             CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcc
Confidence            46889999999 8876666 678999999999999999 78864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.00  E-value=0.0051  Score=53.43  Aligned_cols=41  Identities=12%  Similarity=0.112  Sum_probs=31.2

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|||+.| +++..+. +.++++|+.||+|+|++++..|.
T Consensus        76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  118 (208)
T 2o6s_A           76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG  118 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHh
Confidence            45788888888 7766555 67888888888888888865543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=95.92  E-value=0.0037  Score=55.15  Aligned_cols=41  Identities=12%  Similarity=0.050  Sum_probs=34.8

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|+|+.| +++..|. +.++++|+.||+|+|++++..|.
T Consensus        57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~   99 (220)
T 2v70_A           57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHK   99 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGG
T ss_pred             CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHh
Confidence            45889999999 8888874 88999999999999999887664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=95.91  E-value=0.0032  Score=51.58  Aligned_cols=37  Identities=11%  Similarity=-0.032  Sum_probs=29.0

Q ss_pred             echhhccCCC-ce-eeCCC-CCCCCCCCEEeCcccccccc
Q 042435            4 LLAFLSISAA-CS-GVVEE-EPSSPSFLKSDMSFNNLDGE   40 (412)
Q Consensus         4 ~~~~l~~~~~-~~-G~ip~-~~~~~~l~~~~ls~N~l~G~   40 (412)
                      .|+.|+++.| ++ |.+|. +.++++|+.|++++|++++.
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~   57 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI   57 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc
Confidence            4778888888 77 77776 57788888888888888775

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=95.91  E-value=0.031  Score=51.56  Aligned_cols=30  Identities=17%  Similarity=0.288  Sum_probs=25.1

Q ss_pred             CCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          243 PSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       243 ~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      +.++|+|+.+.||+ ..++.+.++||..+..
T Consensus       173 ~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          173 LAACHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             CEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             ceeeccCCCcCCEE-ECCCCEEEEecccccC
Confidence            35899999999999 5567789999988764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.90  E-value=0.0015  Score=59.60  Aligned_cols=38  Identities=21%  Similarity=0.159  Sum_probs=33.3

Q ss_pred             eechhhccCCC-cee--eCCC-CCCCCCCCEEeCcccccccc
Q 042435            3 VLLAFLSISAA-CSG--VVEE-EPSSPSFLKSDMSFNNLDGE   40 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G--~ip~-~~~~~~l~~~~ls~N~l~G~   40 (412)
                      ..|++||||.| ++|  .+|. +..+++|+.||||+|+|++.
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~  211 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE  211 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence            46899999999 988  6676 56899999999999999985

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=95.79  E-value=0.0042  Score=62.48  Aligned_cols=37  Identities=24%  Similarity=0.192  Sum_probs=18.2

Q ss_pred             chhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCC
Q 042435            5 LAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         5 ~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      |++|||+.| ++ .||+...+++|+.||+|+|+|+|.+|
T Consensus       453 L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~  490 (549)
T 2z81_A          453 LQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPD  490 (549)
T ss_dssp             CCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCT
T ss_pred             hcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCH
Confidence            444455555 44 34444444555555555555555444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=95.74  E-value=0.0074  Score=50.95  Aligned_cols=40  Identities=10%  Similarity=0.008  Sum_probs=32.7

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|+|+.| +++..|. +.++++|+.||+++|++++-.|.
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~   70 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG   70 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh
Confidence            5789999999 8876665 68899999999999999865443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=95.72  E-value=0.0047  Score=63.64  Aligned_cols=39  Identities=18%  Similarity=0.066  Sum_probs=26.1

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeC------ccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDM------SFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~l------s~N~l~G~iP~   43 (412)
                      .|+.|||+.| ++| ||. +.++++|+.||+      |+|+++|.+|.
T Consensus       514 ~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~  560 (636)
T 4eco_A          514 YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE  560 (636)
T ss_dssp             TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred             CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence            4667777777 666 655 566777777777      45666777775

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=95.70  E-value=0.0066  Score=53.81  Aligned_cols=41  Identities=15%  Similarity=0.017  Sum_probs=33.4

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|+|+.| +++..+. +.++++|+.||||+|+|++-.|.
T Consensus        64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~  106 (229)
T 3e6j_A           64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA  106 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence            46899999999 8554445 68999999999999999975553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=95.69  E-value=0.0047  Score=56.50  Aligned_cols=42  Identities=19%  Similarity=0.032  Sum_probs=33.4

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      ..|++|+|+.| +++..+. +.++++|+.||+++|.+++..|..
T Consensus       153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  196 (285)
T 1ozn_A          153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA  196 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH
Confidence            35788888888 7776665 778888888888888888887763

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=95.69  E-value=0.036  Score=48.54  Aligned_cols=102  Identities=22%  Similarity=0.114  Sum_probs=62.4

Q ss_pred             ceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCccc
Q 042435          204 SLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTL  283 (412)
Q Consensus       204 sL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~  283 (412)
                      +|.++|...+  .+++..+.+.++.|.+.+|.-+-.... + ..+=..|..|++..+|.+...+ ..+.           
T Consensus        34 SL~eIL~~~~--~PlsEEqaWALc~Qc~~~L~~~~~~~~-~-~~~i~~~~~i~l~~dG~V~f~~-~~s~-----------   97 (229)
T 2yle_A           34 SLEEILRLYN--QPINEEQAWAVCYQCCGSLRAAARRRQ-P-RHRVRSAAQIRVWRDGAVTLAP-AADD-----------   97 (229)
T ss_dssp             EHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHTTC-C-CCCCCSGGGEEEETTSCEEECC-C--------------
T ss_pred             cHHHHHHHcC--CCcCHHHHHHHHHHHHHHHHhhhhccc-C-CceecCCcceEEecCCceeccc-cccc-----------
Confidence            6777776544  369999999999999999876622101 1 1222345788898888887664 1110           


Q ss_pred             ccccccccccccccCcccCcccccHHHHHHHHHHHhCCCC
Q 042435          284 QAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP  323 (412)
Q Consensus       284 ~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P  323 (412)
                       .....+.|||... ...+.+.=|||+|+++|.-+-=..|
T Consensus        98 -~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~  135 (229)
T 2yle_A           98 -AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK  135 (229)
T ss_dssp             ----------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             -ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence             1122456888763 3445778899999999998864433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=95.66  E-value=0.0044  Score=51.85  Aligned_cols=36  Identities=11%  Similarity=0.015  Sum_probs=19.2

Q ss_pred             chhhccCCC-ce-eeCCC-CCCCCCCCEEeCcccccccc
Q 042435            5 LAFLSISAA-CS-GVVEE-EPSSPSFLKSDMSFNNLDGE   40 (412)
Q Consensus         5 ~~~l~~~~~-~~-G~ip~-~~~~~~l~~~~ls~N~l~G~   40 (412)
                      |+.|+|+.| ++ |.+|. +..+++|+.||+++|.+++.
T Consensus        26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~   64 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV   64 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC
T ss_pred             CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh
Confidence            455555555 54 55544 34555555555555555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=95.60  E-value=0.004  Score=64.22  Aligned_cols=42  Identities=10%  Similarity=0.037  Sum_probs=37.2

Q ss_pred             eechhhccCCC-ceee-----------------CCC-CC--CCCCCCEEeCccccccccCCCC
Q 042435            3 VLLAFLSISAA-CSGV-----------------VEE-EP--SSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~-----------------ip~-~~--~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      ..|++|||+.| ++|.                 ||+ +.  ++++|+.|++++|+++|.+|..
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~  268 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF  268 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH
Confidence            46899999999 9996                 877 78  8999999999999999999974

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.51  E-value=0.0049  Score=62.66  Aligned_cols=38  Identities=16%  Similarity=0.152  Sum_probs=30.8

Q ss_pred             chhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCCC
Q 042435            5 LAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         5 ~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      |++|+|+.| +++ ||.+.++++|+.||||+|+|+ .||..
T Consensus       443 L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~  481 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPA  481 (567)
T ss_dssp             CSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGG
T ss_pred             ceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchh
Confidence            677888888 776 677888888888888888888 78863

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=95.47  E-value=0.0073  Score=56.18  Aligned_cols=43  Identities=21%  Similarity=0.226  Sum_probs=31.0

Q ss_pred             eechhhccCCC-ceeeCC--CCCCCCCCCEEeCccccccccCCCCCc
Q 042435            3 VLLAFLSISAA-CSGVVE--EEPSSPSFLKSDMSFNNLDGEIPTYLR   46 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip--~~~~~~~l~~~~ls~N~l~G~iP~~~~   46 (412)
                      ..|++|||+.| ++|.+|  .+..+++|+.||+|+|+|+ .||..++
T Consensus       228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~  273 (312)
T 1wwl_A          228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP  273 (312)
T ss_dssp             CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred             CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence            36778888888 777664  3556778888888888887 7776444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=95.42  E-value=0.013  Score=57.29  Aligned_cols=41  Identities=15%  Similarity=0.092  Sum_probs=28.4

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|||+.| +++.+|. +.++++|+.||+|+|++++..|.
T Consensus       323 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  365 (455)
T 3v47_A          323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ  365 (455)
T ss_dssp             TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh
Confidence            35677777777 6666555 56777777777777777776665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=95.41  E-value=0.0048  Score=53.19  Aligned_cols=40  Identities=23%  Similarity=0.088  Sum_probs=21.9

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|+|+.| +++..|. +.++++|+.||+|+|++++..|.
T Consensus        89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~  130 (197)
T 4ezg_A           89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT  130 (197)
T ss_dssp             TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHH
T ss_pred             CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHH
Confidence            3555566655 5554433 55555666666666666554443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=95.35  E-value=0.01  Score=60.33  Aligned_cols=40  Identities=18%  Similarity=0.040  Sum_probs=25.4

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|+.||||.| +++.+|. +.++++|+.||||+|+|++..|.
T Consensus       519 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  560 (635)
T 4g8a_A          519 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  560 (635)
T ss_dssp             TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred             CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence            4666666666 6665554 55666666666666666666665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=95.33  E-value=0.012  Score=59.25  Aligned_cols=41  Identities=17%  Similarity=0.161  Sum_probs=28.1

Q ss_pred             eechhhccCCC-ce-eeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CS-GVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~-G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|+|+.| ++ |.+|. +.++++|+.||+|+|++++..|.
T Consensus       445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~  488 (570)
T 2z63_A          445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT  488 (570)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred             CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh
Confidence            35677777777 55 56665 66777777777777777776665

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=95.31  E-value=0.029  Score=52.92  Aligned_cols=31  Identities=23%  Similarity=0.455  Sum_probs=27.3

Q ss_pred             CCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          243 PSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       243 ~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ..++|+|+.+.||++++++.+.++||+.+..
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            4799999999999999878899999987753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=95.29  E-value=0.011  Score=57.92  Aligned_cols=41  Identities=15%  Similarity=-0.034  Sum_probs=29.8

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|+.|||+.| +++..|. +.++++|+.|++++|++++..|.
T Consensus       207 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  249 (440)
T 3zyj_A          207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN  249 (440)
T ss_dssp             SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh
Confidence            35777888888 7777665 67777777777777777776654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=95.24  E-value=0.012  Score=49.62  Aligned_cols=36  Identities=8%  Similarity=-0.028  Sum_probs=28.0

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCcccccccc
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGE   40 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~   40 (412)
                      .|++|||+.| +++. +.+.++++|+.||+|+|.+++-
T Consensus        43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~   79 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRI   79 (176)
T ss_dssp             CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEE
T ss_pred             CCCEEECCCCCCCcc-cccccCCCCCEEECCCCccccc
Confidence            5778888888 7765 6677888888888888888754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=95.23  E-value=0.011  Score=57.93  Aligned_cols=41  Identities=15%  Similarity=-0.084  Sum_probs=28.2

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|+.|||+.| +++..|. +.++++|+.|++++|++++..|.
T Consensus       218 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  260 (452)
T 3zyi_A          218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN  260 (452)
T ss_dssp             TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred             ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH
Confidence            35677777777 7776655 66677777777777777766654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=95.22  E-value=0.007  Score=61.67  Aligned_cols=41  Identities=22%  Similarity=0.075  Sum_probs=32.0

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|||+.| +++.+|. +.++++|+.||+|+|++++.+|.
T Consensus       473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  515 (606)
T 3vq2_A          473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS  515 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred             CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence            45778888888 8887766 67788888888888888887775

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=95.15  E-value=0.011  Score=53.84  Aligned_cols=59  Identities=14%  Similarity=-0.018  Sum_probs=43.7

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCCC--cCC-CCcccccCcCCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTYL--RDN-PPKSFVGNKGLCG   61 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~~--~~~-~~~~~~gn~~lcg   61 (412)
                      ..|++|+|+.| +++..|. +.++++|+.||+++|+++|..|..+  +.+ ..-.+.+|+-.|.
T Consensus       157 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence            46899999999 9877766 6899999999999999999776422  222 3344556765553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=95.09  E-value=0.01  Score=54.71  Aligned_cols=40  Identities=25%  Similarity=0.139  Sum_probs=32.2

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      ..|++|||+.| +++..|. +.++++|+.||+|+|.+++..|
T Consensus       175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  216 (306)
T 2z66_A          175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT  216 (306)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred             cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh
Confidence            35788889888 8887766 7788888888888888887555

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=95.09  E-value=0.016  Score=52.54  Aligned_cols=40  Identities=15%  Similarity=0.079  Sum_probs=28.4

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      ..|++|+|+.| +++..+. +.++++|+.|++++|.+++-.|
T Consensus       133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A          133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            35777888888 7665544 6777888888888888776444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=95.05  E-value=0.012  Score=48.05  Aligned_cols=40  Identities=23%  Similarity=0.293  Sum_probs=35.6

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|+|+.| +++. +.+.++++|+.||+|+|.+++.+|.
T Consensus        42 ~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~   82 (149)
T 2je0_A           42 EELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEV   82 (149)
T ss_dssp             TTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHH
T ss_pred             CCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHH
Confidence            46899999999 8776 7788999999999999999998886

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=95.05  E-value=0.0072  Score=64.52  Aligned_cols=42  Identities=7%  Similarity=0.074  Sum_probs=36.4

Q ss_pred             eechhhccCCC-cee-----------------eCCC-CC--CCCCCCEEeCccccccccCCCC
Q 042435            3 VLLAFLSISAA-CSG-----------------VVEE-EP--SSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G-----------------~ip~-~~--~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      ..|++|||+.| ++|                 .||+ +.  ++++|+.|+|++|+++|.+|..
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~  510 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF  510 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH
Confidence            46889999999 999                 4877 77  8999999999999999999963

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=95.05  E-value=0.015  Score=52.00  Aligned_cols=40  Identities=8%  Similarity=0.043  Sum_probs=31.4

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|+.|+|+.| +++..|. +.++++|+.||+|+|++++..|.
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   77 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG   77 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHh
Confidence            4678888888 8777765 77888888888888888886664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=95.02  E-value=0.01  Score=62.10  Aligned_cols=40  Identities=18%  Similarity=0.209  Sum_probs=29.9

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      ..|++|+|+.| ++ .||. +.++++|+.||||+|+|+ .||..
T Consensus       247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~  288 (727)
T 4b8c_D          247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAE  288 (727)
T ss_dssp             CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSS
T ss_pred             CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChh
Confidence            45777888888 77 6766 777788888888888887 77763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=95.00  E-value=0.017  Score=53.97  Aligned_cols=41  Identities=10%  Similarity=0.021  Sum_probs=33.9

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      .|++|+|+.| +++..+. +.++++|+.||+++|++++..|..
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA   95 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence            4788999999 8877764 788999999999999998877763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=94.96  E-value=0.011  Score=63.17  Aligned_cols=41  Identities=17%  Similarity=0.127  Sum_probs=32.1

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCcc------ccccccCCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSF------NNLDGEIPTY   44 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~------N~l~G~iP~~   44 (412)
                      ..|+.|||+.| ++| ||. +.++++|+.||||+      |+++|.+|..
T Consensus       753 ~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~  801 (876)
T 4ecn_A          753 PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG  801 (876)
T ss_dssp             TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred             CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence            45788888888 887 665 77888888888866      7788888864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=94.96  E-value=0.0092  Score=62.52  Aligned_cols=39  Identities=15%  Similarity=-0.019  Sum_probs=24.2

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      .|++|||+.| ++ .||. +.++++|+.|+||+|.|+ .||..
T Consensus       271 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~  311 (727)
T 4b8c_D          271 NLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWE  311 (727)
T ss_dssp             TCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSS
T ss_pred             CCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChh
Confidence            4666666666 55 5554 566666666666666664 56653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=94.89  E-value=0.014  Score=50.48  Aligned_cols=57  Identities=12%  Similarity=0.023  Sum_probs=41.8

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCCCcC---C-CCcccccCcCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTYLRD---N-PPKSFVGNKGLC   60 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~~~~---~-~~~~~~gn~~lc   60 (412)
                      ..|++|+|+.| +++..|. +.++++|+.||+++|++++..|. .+.   + ..-.+.+|+-.|
T Consensus       100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG-VFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSCCBCC
T ss_pred             cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH-HhccCCCccEEEecCCCeec
Confidence            46899999999 8877666 78899999999999999975543 232   2 334455676555

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=94.85  E-value=0.0069  Score=51.14  Aligned_cols=40  Identities=18%  Similarity=0.124  Sum_probs=34.0

Q ss_pred             eechhhccCCC-ceeeCCCC-CCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEEE-PSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~-~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|||+.| +++..|.+ .++++|+.||+|+|++ +.+|.
T Consensus        64 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~  105 (176)
T 1a9n_A           64 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGD  105 (176)
T ss_dssp             SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGG
T ss_pred             CCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC-Ccchh
Confidence            46899999999 88766664 8899999999999999 55775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=94.85  E-value=0.0087  Score=55.62  Aligned_cols=37  Identities=11%  Similarity=0.099  Sum_probs=22.4

Q ss_pred             echhhccCCC-ceeeCCC-C--CCCCCCCEEeCcccccccc
Q 042435            4 LLAFLSISAA-CSGVVEE-E--PSSPSFLKSDMSFNNLDGE   40 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~--~~~~~l~~~~ls~N~l~G~   40 (412)
                      .|++|+|+.| ++|.+|. +  .++++|+.||+|+|+++|.
T Consensus        96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  136 (312)
T 1wwl_A           96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR  136 (312)
T ss_dssp             CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS
T ss_pred             CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch
Confidence            4556666666 6666655 3  5566666666666666665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=94.84  E-value=0.0089  Score=55.71  Aligned_cols=39  Identities=21%  Similarity=0.100  Sum_probs=27.0

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCC
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      ..|++|+|+.| +++. |....+++|+.||+|+|++++-.|
T Consensus       169 ~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~l~~  208 (317)
T 3o53_A          169 DTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFMGP  208 (317)
T ss_dssp             TTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCEECG
T ss_pred             CcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCcchh
Confidence            35777888888 6655 454457778888888888876444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=94.79  E-value=0.018  Score=53.91  Aligned_cols=40  Identities=8%  Similarity=-0.011  Sum_probs=31.4

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|+|+.| +++..|. +.++++|+.||+++|++++..|.
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   96 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK   96 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh
Confidence            4678888888 7777664 77888888888888888877675

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=94.79  E-value=0.013  Score=55.47  Aligned_cols=45  Identities=13%  Similarity=-0.034  Sum_probs=38.4

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCCCcCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTYLRDN   48 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~~~~~   48 (412)
                      .|+.|+|+.| ++...+. +.++++|+.||||+|++.+.||...|.+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~   77 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN   77 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc
Confidence            5889999999 8855454 7899999999999999999999866655

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=94.70  E-value=0.0056  Score=62.38  Aligned_cols=42  Identities=21%  Similarity=0.107  Sum_probs=37.1

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      ..|++|+|+.| +++.+|. +.++++|+.||+|+|+++|.+|..
T Consensus       476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  519 (606)
T 3t6q_A          476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA  519 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGG
T ss_pred             CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhH
Confidence            46889999999 9998877 889999999999999999988863

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=94.57  E-value=0.011  Score=61.11  Aligned_cols=34  Identities=18%  Similarity=0.193  Sum_probs=18.0

Q ss_pred             echhhccCCC-ceeeCCC--CCCCCCCCEEeCcccccc
Q 042435            4 LLAFLSISAA-CSGVVEE--EPSSPSFLKSDMSFNNLD   38 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~--~~~~~~l~~~~ls~N~l~   38 (412)
                      .|++|||+.| ++ .||.  +.++++|+.||+|+|+|+
T Consensus       537 ~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~  573 (680)
T 1ziw_A          537 HLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLN  573 (680)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCC
Confidence            3555555555 44 3332  455555555555555555

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=94.52  E-value=0.013  Score=48.94  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=31.4

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccc
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDG   39 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G   39 (412)
                      ..|++|||+.| +++.+|. +.++++|+.||+|+|++++
T Consensus        71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  109 (168)
T 2ell_A           71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD  109 (168)
T ss_dssp             SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS
T ss_pred             CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc
Confidence            46889999999 8888877 4568999999999999987

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=94.51  E-value=0.027  Score=53.54  Aligned_cols=37  Identities=24%  Similarity=0.124  Sum_probs=19.4

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCcccccccc
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGE   40 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~   40 (412)
                      .|++|+|+.| +++..|. +.++++|+.||||+|+|++-
T Consensus        65 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~  103 (361)
T 2xot_A           65 NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL  103 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             ccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC
Confidence            3455555555 5544443 45555555555555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=94.46  E-value=0.031  Score=56.41  Aligned_cols=37  Identities=27%  Similarity=0.384  Sum_probs=17.7

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|+.|+|+.| ++|.+|. +.  ++|+.||+|+|+++ .||.
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~  467 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPK  467 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCT
T ss_pred             cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccCh
Confidence            3455555555 5554433 22  34555555555554 4444

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=94.45  E-value=0.093  Score=51.16  Aligned_cols=29  Identities=17%  Similarity=0.212  Sum_probs=22.9

Q ss_pred             eeeeecCceEEEEEEeCC--------CcEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAELPD--------GKVVALKKLHH  177 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~--------~~~vAvK~l~~  177 (412)
                      +.|+.|....||++...+        ++.+++|+...
T Consensus        79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~  115 (429)
T 1nw1_A           79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFN  115 (429)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECS
T ss_pred             EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCC
Confidence            568888899999998753        57888998744

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=94.42  E-value=0.023  Score=55.42  Aligned_cols=41  Identities=7%  Similarity=-0.023  Sum_probs=32.1

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      .|++|||+.| +++.+|. +.++++|+.||+|+|.+++.+|..
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~   73 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN   73 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc
Confidence            4778888888 8877765 778888888888888888887753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=94.42  E-value=0.02  Score=58.15  Aligned_cols=41  Identities=12%  Similarity=0.026  Sum_probs=33.8

Q ss_pred             eechhhccCCC-ceee-CCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGV-VEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~-ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|+|+.| ++|. +|. +.++++|+.||+|+|++++..|.
T Consensus       448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  491 (606)
T 3vq2_A          448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG  491 (606)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred             CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence            46888999999 8884 566 78889999999999999988876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.39  E-value=0.014  Score=59.64  Aligned_cols=57  Identities=14%  Similarity=0.086  Sum_probs=31.2

Q ss_pred             chhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCCCCcCC-CCcccccCcCCCCCC
Q 042435            5 LAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPTYLRDN-PPKSFVGNKGLCGHV   63 (412)
Q Consensus         5 ~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~~~~~~-~~~~~~gn~~lcg~~   63 (412)
                      |++|||+.| +++.  ++..+++|..||+|+|.++|..+...+.. ....+.+|..+|+.+
T Consensus       326 L~~L~L~~N~l~~~--~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          326 LENLYLDHNSIVTL--KLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             CSEEECCSSCCCCC--CCCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCTT
T ss_pred             CCEEECCCCCCCCc--ChhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhccccccccCCcc
Confidence            444444444 3332  13445566666666666666544333444 555677888888754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=94.36  E-value=0.025  Score=51.95  Aligned_cols=40  Identities=15%  Similarity=0.032  Sum_probs=34.1

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      ..|++|+|+.| +++..|. +.++++|+.|++++|+|++-.|
T Consensus       100 ~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~  141 (290)
T 1p9a_G          100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP  141 (290)
T ss_dssp             TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence            46899999999 8877766 8899999999999999996444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=94.29  E-value=0.019  Score=57.17  Aligned_cols=40  Identities=18%  Similarity=0.131  Sum_probs=21.9

Q ss_pred             echhhccCCC-cee--eCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSG--VVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G--~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|+.|+|+.| +++  .+|. +.++++|+.||+|+|.+++.+|.
T Consensus       349 ~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~  392 (520)
T 2z7x_B          349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK  392 (520)
T ss_dssp             SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred             CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc
Confidence            3555566665 554  3433 45555555566666665555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=94.24  E-value=0.02  Score=60.99  Aligned_cols=40  Identities=10%  Similarity=0.086  Sum_probs=20.5

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|||++| +++.+|. +.++++|+.||+|+|++++.+|.
T Consensus        74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~  115 (844)
T 3j0a_A           74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK  115 (844)
T ss_dssp             TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCST
T ss_pred             CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccccc
Confidence            3455555555 5555444 44555555555555555554443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=94.23  E-value=0.024  Score=55.84  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=28.9

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|+|+.| +++ +|++.++++|+.||+|+|+++| +|.
T Consensus       132 ~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l~~-lp~  170 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLKK-LPD  170 (454)
T ss_dssp             TCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSC-CCC
T ss_pred             CCCEEECcCCCCCC-CcccCCCCCCCEEECCCCcCcc-cCC
Confidence            4677788877 776 7777778888888888888876 664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=94.15  E-value=0.035  Score=52.64  Aligned_cols=41  Identities=12%  Similarity=-0.076  Sum_probs=35.2

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|||+.| +++..|. +.++++|+.|+||+|++++..|.
T Consensus        88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~  130 (361)
T 2xot_A           88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN  130 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH
Confidence            46889999999 8887765 78899999999999999987775

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=94.12  E-value=0.03  Score=56.55  Aligned_cols=38  Identities=16%  Similarity=-0.042  Sum_probs=18.7

Q ss_pred             chhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCC
Q 042435            5 LAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         5 ~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      |++|||+.| +++..|. +.++++|+.||+|+|++++-.|
T Consensus        54 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~   93 (562)
T 3a79_B           54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF   93 (562)
T ss_dssp             CCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT
T ss_pred             cCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH
Confidence            445555555 4444432 4455555555555555554444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=94.11  E-value=0.038  Score=50.31  Aligned_cols=41  Identities=7%  Similarity=0.039  Sum_probs=34.0

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|+|+.| +++..+. +.++++|+.||+++|++++-.|.
T Consensus       129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  171 (285)
T 1ozn_A          129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (285)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence            46889999999 8876665 78899999999999999865543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=94.11  E-value=0.022  Score=56.09  Aligned_cols=41  Identities=20%  Similarity=0.111  Sum_probs=32.7

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|+.|||+.| +++..+. +.++++|+.|++++|++++..|.
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  290 (477)
T 2id5_A          248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY  290 (477)
T ss_dssp             TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred             cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence            35788888888 8877765 77888888888888888887775

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.10  E-value=0.018  Score=57.29  Aligned_cols=39  Identities=15%  Similarity=0.043  Sum_probs=32.6

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      .|++|||+.| +++.+|. +.++++|+.||||+|.++|.+|
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~   75 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD   75 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc
Confidence            5888999999 8887665 7888899999999999988776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=94.08  E-value=0.0096  Score=58.69  Aligned_cols=39  Identities=23%  Similarity=0.221  Sum_probs=30.9

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCccccccc--cCCCC
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDG--EIPTY   44 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G--~iP~~   44 (412)
                      ..|++|+|+.| ++ .||.  .+++|+.||+++|+++|  .+|..
T Consensus       337 ~~L~~L~L~~N~l~-~lp~--~l~~L~~L~L~~N~l~~l~~ip~~  378 (454)
T 1jl5_A          337 PRLERLIASFNHLA-EVPE--LPQNLKQLHVEYNPLREFPDIPES  378 (454)
T ss_dssp             TTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred             CcCCEEECCCCccc-cccc--hhhhccEEECCCCCCCcCCCChHH
Confidence            35788888888 76 4766  47889999999999999  88864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=94.04  E-value=0.019  Score=49.28  Aligned_cols=41  Identities=22%  Similarity=0.247  Sum_probs=34.4

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|+|+.| +++.+|. +.++++|+.||+|+|.+-+.+|.
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~  154 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP  154 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG
T ss_pred             CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh
Confidence            46889999999 8887755 88899999999999996677774

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=94.00  E-value=0.025  Score=57.54  Aligned_cols=42  Identities=12%  Similarity=0.038  Sum_probs=34.0

Q ss_pred             eechhhccCCC-ceee-CC--C-CCCCCCCCEEeCccccccccCCCC
Q 042435            3 VLLAFLSISAA-CSGV-VE--E-EPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~-ip--~-~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      ..|++|+|+.| ++|. +|  . +.++++|+.||+|+|++++..|..
T Consensus       449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  495 (606)
T 3t6q_A          449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA  495 (606)
T ss_dssp             TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred             CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence            46889999999 7763 33  3 678999999999999999988863

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=93.98  E-value=0.033  Score=56.55  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=24.0

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|||+.| ++| ||.+.+  +|+.||+|+|+|+| ||.
T Consensus       100 ~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N~l~~-lp~  137 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-LPELPA--SLKHLDVDNNQLTM-LPE  137 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSCCSC-CCC
T ss_pred             CCCCEEEccCCCCCC-cchhhc--CCCEEECCCCcCCC-CCC
Confidence            34667777777 666 655433  67777777777766 665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=93.96  E-value=0.023  Score=52.62  Aligned_cols=41  Identities=7%  Similarity=-0.089  Sum_probs=27.7

Q ss_pred             eechhhccCCC-ceeeCCC-----CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-----EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-----~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|||+.| +++.+|.     +..+++|+.|++|+|++++..|.
T Consensus       117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  163 (310)
T 4glp_A          117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCE  163 (310)
T ss_dssp             BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTT
T ss_pred             CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHH
Confidence            45777777777 7765552     23577777777777777666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=93.92  E-value=0.034  Score=56.42  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=31.5

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|||+.| ++ .||  ..+++|+.||+|+|+|+| ||.
T Consensus        81 ~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~  117 (571)
T 3cvr_A           81 QITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE  117 (571)
T ss_dssp             TCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC
T ss_pred             CCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch
Confidence            5889999999 77 688  567899999999999999 887

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=93.79  E-value=0.036  Score=51.03  Aligned_cols=42  Identities=17%  Similarity=0.131  Sum_probs=35.4

Q ss_pred             eechhhccCCC-cee-eCCC-CCCCCCCCEEeCccccccccCCCC
Q 042435            3 VLLAFLSISAA-CSG-VVEE-EPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G-~ip~-~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      ..|++|+|+.| +++ .+|. +.++++|+.||+|+|++++..|..
T Consensus       150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  194 (306)
T 2z66_A          150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA  194 (306)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH
Confidence            46889999999 887 4566 789999999999999999987763

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=93.70  E-value=0.018  Score=57.40  Aligned_cols=39  Identities=23%  Similarity=0.089  Sum_probs=21.7

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|||+.| +++..|. +.++++|+.||+|+|+++ .||.
T Consensus        46 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~   86 (520)
T 2z7x_B           46 KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISC   86 (520)
T ss_dssp             TCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEEC
T ss_pred             cccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCc
Confidence            4555666666 5555543 555555666666655555 3553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=93.64  E-value=0.032  Score=56.06  Aligned_cols=59  Identities=19%  Similarity=0.095  Sum_probs=45.0

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCCC--cCC-CCcccccCcCCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTYL--RDN-PPKSFVGNKGLCG   61 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~~--~~~-~~~~~~gn~~lcg   61 (412)
                      ..|++|||+.| +++.+|. +.++++|+.||+++|++++..|..+  +.+ ..-.+.+|+--|.
T Consensus       470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            46899999999 9999876 8899999999999999999877532  222 3344556765553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=93.56  E-value=0.037  Score=51.66  Aligned_cols=40  Identities=10%  Similarity=0.013  Sum_probs=26.2

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|+.|+|+.| +++..|. +.++++|+.||+++|++++..|.
T Consensus       194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  235 (332)
T 2ft3_A          194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG  235 (332)
T ss_dssp             SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT
T ss_pred             CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh
Confidence            4666777777 6666544 66677777777777777665553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=93.44  E-value=0.0075  Score=51.99  Aligned_cols=39  Identities=13%  Similarity=0.152  Sum_probs=31.5

Q ss_pred             echhhccCCC-ceeeCCC-------CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-------EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-------~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .++.|+++.+ ++|.+|.       +.++++|+.||+|+|++++ +|.
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~   65 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-ISS   65 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CCC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-ccc
Confidence            4677888888 8898875       5567889999999999988 773

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=93.43  E-value=0.058  Score=52.77  Aligned_cols=40  Identities=5%  Similarity=-0.065  Sum_probs=28.0

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|||+.| +++..|. +.++++|+.||||+|++++..|.
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~  117 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG  117 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh
Confidence            4667777777 7776655 67777777777777777766554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=93.41  E-value=0.048  Score=52.14  Aligned_cols=41  Identities=15%  Similarity=0.102  Sum_probs=32.0

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|+|+.| +++..|. +.++++|+.||+++|++++..|.
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  111 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH  111 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH
Confidence            35788888888 7777664 77888888888888888876665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=93.38  E-value=0.034  Score=55.72  Aligned_cols=38  Identities=21%  Similarity=0.136  Sum_probs=17.8

Q ss_pred             chhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCC
Q 042435            5 LAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         5 ~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      |++|||+.| +++..|. +.++++|+.||+|+|++++..|
T Consensus        52 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   91 (549)
T 2z81_A           52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS   91 (549)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred             ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH
Confidence            444444444 4444433 4444445555555555444433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=93.35  E-value=0.059  Score=52.49  Aligned_cols=40  Identities=18%  Similarity=0.161  Sum_probs=31.7

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|+|+.| ++ .+|.+.++++|+.||+|+|++++..|.
T Consensus       185 ~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~  225 (440)
T 3zyj_A          185 SNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPG  225 (440)
T ss_dssp             SSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCEECTT
T ss_pred             cccCeecCCCCcCc-cccccCCCcccCEEECCCCccCccChh
Confidence            46788888888 65 667788888888888888888887775

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=93.31  E-value=0.032  Score=50.46  Aligned_cols=36  Identities=6%  Similarity=-0.039  Sum_probs=20.5

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCcccccccc
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGE   40 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~   40 (412)
                      .|++|+|+.| ++ .+|.+..+++|+.|++|+|++++-
T Consensus        42 ~L~~L~l~~n~i~-~l~~l~~l~~L~~L~L~~N~i~~~   78 (263)
T 1xeu_A           42 GVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQISDL   78 (263)
T ss_dssp             TCSEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCC
T ss_pred             cCcEEECcCCCcc-cchHHhhCCCCCEEECCCCccCCC
Confidence            3556666666 43 345555566666666666666553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=93.30  E-value=0.049  Score=49.31  Aligned_cols=40  Identities=15%  Similarity=-0.056  Sum_probs=32.2

Q ss_pred             echhhccCCC-ceeeCC-CCCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVE-EEPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip-~~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|||+.| +++..| .+.++++|+.||+|+|++++-.|.
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~   70 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG   70 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHH
Confidence            4788999998 888776 478888999999999998875553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.27  E-value=0.064  Score=54.60  Aligned_cols=41  Identities=15%  Similarity=0.102  Sum_probs=30.1

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|||+.| +++..|. +.++++|+.||||+|.+++..|.
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  117 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH  117 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH
Confidence            35777888888 7777763 77778888888888888775554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=93.18  E-value=0.035  Score=50.25  Aligned_cols=34  Identities=21%  Similarity=0.202  Sum_probs=20.1

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCccccccc
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDG   39 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G   39 (412)
                      .|++|+|+.| +++ +|.+.. ++|+.|++|+|++++
T Consensus        86 ~L~~L~L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~  120 (263)
T 1xeu_A           86 KLEELSVNRNRLKN-LNGIPS-ACLSRLFLDNNELRD  120 (263)
T ss_dssp             SCCEEECCSSCCSC-CTTCCC-SSCCEEECCSSCCSB
T ss_pred             CCCEEECCCCccCC-cCcccc-CcccEEEccCCccCC
Confidence            4666666666 554 444433 566666666666655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=93.17  E-value=0.048  Score=49.35  Aligned_cols=53  Identities=15%  Similarity=0.058  Sum_probs=36.5

Q ss_pred             hhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCCCCcCC----CCcccccCcCCC
Q 042435            7 FLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPTYLRDN----PPKSFVGNKGLC   60 (412)
Q Consensus         7 ~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~~~~~~----~~~~~~gn~~lc   60 (412)
                      +|||+.| +++..|......+|+.||+++|++++- |...+..    ..-.+.+|+--|
T Consensus       181 ~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          181 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             EEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCC-CTTTTTTCCSCCEEECCSSCBCC
T ss_pred             eeecCCCcccccCccccCCCcccEEECCCCceeec-CHhHhcccccccEEEccCCcccc
Confidence            7889999 887777755556899999999999864 4433332    334455676655

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=93.15  E-value=0.016  Score=54.38  Aligned_cols=40  Identities=15%  Similarity=0.086  Sum_probs=31.9

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|+|+.| +++ +|.+..+++|+.|++++|.+++..|.
T Consensus       265 ~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          265 TKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             TTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred             CCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCcCCCcChh
Confidence            35788889888 666 46677888899999999988887775

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=93.12  E-value=0.032  Score=57.11  Aligned_cols=38  Identities=11%  Similarity=0.110  Sum_probs=23.8

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCC
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      .|+.|+|+.| +++. +.+.++++|+.||||+|.|++..|
T Consensus       132 ~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A          132 QLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             TCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             ccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh
Confidence            4666666666 5553 456666666666666666666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=93.10  E-value=0.018  Score=53.59  Aligned_cols=39  Identities=15%  Similarity=0.043  Sum_probs=32.9

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      .|++|||+.| +++..|. +.++++|+.||+|+|++++..|
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~   75 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD   75 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh
Confidence            5888999999 8887765 7888999999999999988766

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=93.09  E-value=0.033  Score=50.66  Aligned_cols=40  Identities=13%  Similarity=0.041  Sum_probs=32.8

Q ss_pred             eechhhccCCC-ceee--CCCCCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGV--VEEEPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~--ip~~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++||||.| +++.  +..+..+ +|+.|+|++|.+++.+|.
T Consensus       196 ~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          196 PNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             TTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSS
T ss_pred             CCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCc
Confidence            46899999999 8774  3335455 999999999999999995

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=93.04  E-value=0.074  Score=49.51  Aligned_cols=42  Identities=19%  Similarity=0.121  Sum_probs=28.9

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTYL   45 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~~   45 (412)
                      ..|++|+|+.| +++..|. +.++++|+.||+|+|+++ .+|...
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~  119 (330)
T 1xku_A           76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM  119 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC
T ss_pred             CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhh
Confidence            34677777777 7766655 677777777777777776 566543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=92.72  E-value=0.066  Score=48.34  Aligned_cols=41  Identities=12%  Similarity=0.012  Sum_probs=33.6

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|+|+.| +++..+. +.++++|+.|++++|++++..|.
T Consensus        85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  127 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR  127 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHH
Confidence            46889999999 7766655 67899999999999999886664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=92.61  E-value=0.024  Score=58.12  Aligned_cols=38  Identities=18%  Similarity=0.023  Sum_probs=18.0

Q ss_pred             chhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            5 LAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         5 ~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      |++|+|+.| ++ .||. +.++++|..|||++|.|+|.+|.
T Consensus       263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            444444444 44 3333 44445555555555555554443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=92.47  E-value=0.03  Score=49.56  Aligned_cols=40  Identities=10%  Similarity=-0.037  Sum_probs=29.5

Q ss_pred             eechhhccCCC-ceeeC-CC-CCCCCCCCEEeCcc-ccccccCC
Q 042435            3 VLLAFLSISAA-CSGVV-EE-EPSSPSFLKSDMSF-NNLDGEIP   42 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~i-p~-~~~~~~l~~~~ls~-N~l~G~iP   42 (412)
                      ..|++|+|+.| .-+.| |. +.++++|+.|++++ |++++--|
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            45788999988 34445 43 67888999999998 88886444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=92.47  E-value=0.066  Score=50.41  Aligned_cols=40  Identities=8%  Similarity=0.028  Sum_probs=31.2

Q ss_pred             echhhccCCC-ceeeCC-CCCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVE-EEPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip-~~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|||+.| +++..+ .+.++++|+.||+++|++++..|.
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED   94 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh
Confidence            4778888888 777665 377888888888888888876664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=92.23  E-value=0.085  Score=49.71  Aligned_cols=44  Identities=18%  Similarity=0.185  Sum_probs=27.2

Q ss_pred             echhhccCCC-ceeeCCC--CCCCCCCCEEeCccccccccCCCCCcCC
Q 042435            4 LLAFLSISAA-CSGVVEE--EPSSPSFLKSDMSFNNLDGEIPTYLRDN   48 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~--~~~~~~l~~~~ls~N~l~G~iP~~~~~~   48 (412)
                      .|+.|+++.+ .-+.||+  +.++++|+.||+|+|+|+ .||...+.+
T Consensus       178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~  224 (350)
T 4ay9_X          178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLEN  224 (350)
T ss_dssp             EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTT
T ss_pred             chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhhcc
Confidence            4566666653 5556654  567777777777777776 456543433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=92.18  E-value=0.088  Score=54.27  Aligned_cols=41  Identities=15%  Similarity=0.160  Sum_probs=34.8

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      .|+.|+|+.| +++..|. +.++++|+.||+|+|.++|.+|..
T Consensus       382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  424 (680)
T 1ziw_A          382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ  424 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred             cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence            5778888888 8888876 788999999999999999998863

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=91.93  E-value=0.086  Score=51.83  Aligned_cols=36  Identities=22%  Similarity=0.164  Sum_probs=22.7

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCC
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      .|+.|+|+.| +++.  ++.++++|+.||+|+|+|+| +|
T Consensus       192 ~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip  228 (457)
T 3bz5_A          192 LLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID  228 (457)
T ss_dssp             TCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC
T ss_pred             CCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC
Confidence            4566666666 5553  35566666666666666666 55

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=91.93  E-value=0.13  Score=48.44  Aligned_cols=40  Identities=25%  Similarity=0.317  Sum_probs=32.7

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|+|+.| +++..|. +.++++|+.||+|+|++++ +|.
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~  117 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSS  117 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCH
T ss_pred             CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCH
Confidence            45888999999 8887766 7888999999999999985 554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=91.87  E-value=0.097  Score=51.41  Aligned_cols=40  Identities=13%  Similarity=0.135  Sum_probs=29.6

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|||+.| +++..|. +.++++|+.|||++|++++..|.
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~   74 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG   74 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh
Confidence            4677788887 7777655 67777788888888877777665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=91.80  E-value=0.033  Score=47.80  Aligned_cols=39  Identities=10%  Similarity=0.083  Sum_probs=34.2

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|+|+.| +++ +|.+.++++|+.||+++|+++ .+|.
T Consensus        48 ~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l~-~l~~   87 (198)
T 1ds9_A           48 KACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIK-KIEN   87 (198)
T ss_dssp             TTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEEC-SCSS
T ss_pred             CCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCcc-cccc
Confidence            46899999999 877 788888999999999999998 6886

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=91.76  E-value=0.066  Score=52.63  Aligned_cols=40  Identities=13%  Similarity=0.096  Sum_probs=21.2

Q ss_pred             echhhccCCC-ceeeCCC-CCCCC-------CCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSP-------SFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~-------~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|+|+.| ++|..+. +.++.       +|+.+|+|+|.+.|++|.
T Consensus       234 ~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~  282 (457)
T 3bz5_A          234 QLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA  282 (457)
T ss_dssp             TCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC
T ss_pred             CCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc
Confidence            4566666666 6554332 33333       445555555555555553

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=91.69  E-value=0.1  Score=50.62  Aligned_cols=78  Identities=10%  Similarity=-0.012  Sum_probs=47.2

Q ss_pred             CCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCccccc--ccccccccccccCc---ccCcccccHHHHHHHHH
Q 042435          242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA--GTYGYIALELVYTM---VVTEKCVIYSFGVVALE  316 (412)
Q Consensus       242 ~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~~~~--gt~~y~aPE~~~~~---~~s~ksDv~S~Gvil~e  316 (412)
                      .+.++|+|++|.||+++.+. ++++||+.+..-..... .....  -...|.+|+.....   ......++.+....+|+
T Consensus       231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~D-la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFD-IGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTWN  308 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHH-HHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHHH
T ss_pred             CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHH-HHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHH
Confidence            45899999999999998776 99999998874321100 00000  11345666544311   11223455677778888


Q ss_pred             HHhCC
Q 042435          317 VLMGT  321 (412)
Q Consensus       317 lltg~  321 (412)
                      .++++
T Consensus       309 ~y~~~  313 (420)
T 2pyw_A          309 LFNKR  313 (420)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=91.59  E-value=0.067  Score=49.08  Aligned_cols=39  Identities=10%  Similarity=0.092  Sum_probs=30.4

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCC
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      ..|++|+|+.| +++. +.+.++++|+.||+|+|.+++..|
T Consensus       134 ~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          134 PQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             TTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh
Confidence            35788888888 6664 667788888888888888887655

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=91.42  E-value=0.13  Score=49.12  Aligned_cols=39  Identities=13%  Similarity=0.096  Sum_probs=21.5

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|+|+.| +++..|. +.++++|+.||+++|+++ .+|.
T Consensus        94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~  134 (390)
T 3o6n_A           94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR  134 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCH
Confidence            3555666655 5555444 455556666666666555 3443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=91.40  E-value=0.069  Score=54.55  Aligned_cols=37  Identities=16%  Similarity=0.090  Sum_probs=25.4

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCcccccccc
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGE   40 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~   40 (412)
                      ..|+.|+|+.| +++ +|.+.++++|+.|+||+|+|++.
T Consensus       109 ~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l  146 (605)
T 1m9s_A          109 KKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI  146 (605)
T ss_dssp             TTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC
T ss_pred             CCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc
Confidence            35677777777 554 45566777777777777777764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=91.22  E-value=0.071  Score=48.90  Aligned_cols=37  Identities=16%  Similarity=0.090  Sum_probs=32.2

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCcccccccc
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGE   40 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~   40 (412)
                      ..|++|+|+.| +++ +|.+.++++|+.|++|+|++++.
T Consensus       112 ~~L~~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~~  149 (291)
T 1h6t_A          112 KKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI  149 (291)
T ss_dssp             TTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCC
T ss_pred             CCCCEEECCCCcCCC-ChhhcCCCCCCEEEccCCcCCcc
Confidence            46899999999 776 57788899999999999999885

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=90.68  E-value=0.083  Score=48.86  Aligned_cols=36  Identities=14%  Similarity=0.136  Sum_probs=29.3

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCccccccc
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDG   39 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G   39 (412)
                      ..|++|+|+.| +++ +|.+.++++|+.||+|+|++++
T Consensus        85 ~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~  121 (308)
T 1h6u_A           85 TKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQITD  121 (308)
T ss_dssp             CSCCEEECCSCCCSC-CGGGTTCTTCCEEECTTSCCCC
T ss_pred             CCCCEEEccCCcCCC-chhhcCCCCCCEEECCCCCCCC
Confidence            46888899988 665 5677888888889999988887

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=90.46  E-value=0.033  Score=51.88  Aligned_cols=40  Identities=10%  Similarity=-0.003  Sum_probs=32.9

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCcccccccc-CCC
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGE-IPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~-iP~   43 (412)
                      .|+.|+++.| ++|.+|.+.++++|+.||+|+|++++. +|.
T Consensus        71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~  112 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG  112 (336)
T ss_dssp             TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH
T ss_pred             cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH
Confidence            4778888888 888887777888899999999988876 664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=90.43  E-value=0.087  Score=51.73  Aligned_cols=36  Identities=14%  Similarity=0.098  Sum_probs=23.4

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCcccccccc
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGE   40 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~   40 (412)
                      .|+.|+|+.| ++|..| +..+++|+.|++++|.++|.
T Consensus       310 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          310 NLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             TCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc
Confidence            4667777777 666554 55666666666666666664

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=90.32  E-value=0.28  Score=45.66  Aligned_cols=32  Identities=31%  Similarity=0.432  Sum_probs=27.5

Q ss_pred             CCCcEEeCCCCCCEEecCC----CcEEEeecCCccc
Q 042435          242 TPSIVHRDISSNNILLNSN----LEAFVADFGTVRL  273 (412)
Q Consensus       242 ~~~ivHrDlkp~NILl~~~----~~~kl~DfGla~~  273 (412)
                      ...++|+|+.+.||+++.+    ..+.|+||+.+..
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            4579999999999999874    6789999998864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=90.01  E-value=0.18  Score=51.66  Aligned_cols=32  Identities=19%  Similarity=0.049  Sum_probs=16.8

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCcccccc
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLD   38 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~   38 (412)
                      .|++|+|+.| +++ ||  ..+++|..||+|+|+|+
T Consensus       222 ~L~~L~Ls~N~L~~-lp--~~l~~L~~L~Ls~N~L~  254 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP--VLPSELKELMVSGNRLT  254 (622)
T ss_dssp             TCCEEECCSSCCSC-CC--CCCTTCCEEECCSSCCS
T ss_pred             CCCEEEccCCccCc-CC--CCCCcCcEEECCCCCCC
Confidence            3555666666 554 44  23345555555555555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=89.78  E-value=0.13  Score=47.45  Aligned_cols=36  Identities=6%  Similarity=0.035  Sum_probs=23.1

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCccccccc
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDG   39 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G   39 (412)
                      ..|++|+|+.| +++. |.+.++++|+.|++|+|++++
T Consensus       129 ~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~  165 (308)
T 1h6u_A          129 SNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSD  165 (308)
T ss_dssp             TTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCC
T ss_pred             CCCCEEECCCCccCcC-ccccCCCCccEEEccCCcCCC
Confidence            34667777777 5543 336666777777777777765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=89.40  E-value=0.12  Score=50.79  Aligned_cols=38  Identities=18%  Similarity=0.216  Sum_probs=24.3

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCC
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      .|+.|+|+.| +++..| +..+++|+.|++++|++++..|
T Consensus       266 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~  304 (466)
T 1o6v_A          266 KLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP  304 (466)
T ss_dssp             TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG
T ss_pred             CCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh
Confidence            4667777777 665433 6666677777777777766443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=89.25  E-value=0.15  Score=40.67  Aligned_cols=51  Identities=20%  Similarity=0.243  Sum_probs=33.8

Q ss_pred             hhccCCC-ce-eeCCC-CCCCCCCCEEeCccccccccCCCCCcCC-C---CcccccCcCCC
Q 042435            7 FLSISAA-CS-GVVEE-EPSSPSFLKSDMSFNNLDGEIPTYLRDN-P---PKSFVGNKGLC   60 (412)
Q Consensus         7 ~l~~~~~-~~-G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~~~~~-~---~~~~~gn~~lc   60 (412)
                      .+|.|.+ ++ -.||. +.  ++|+.||||+|+|+. ||...|.. +   ...+.+|+-.|
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTA-LPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSS-CCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCc-cChhhhhhccccCEEEecCCCeec
Confidence            4566666 65 35564 43  469999999999985 77655544 2   33456787776

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=89.03  E-value=0.17  Score=44.51  Aligned_cols=39  Identities=10%  Similarity=0.107  Sum_probs=32.8

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCcccc-ccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNN-LDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~-l~G~iP~   43 (412)
                      .|++|+|+.| +++..|. +.++++|+.||+++|+ +++ ||.
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-i~~   73 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-LES   73 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-ECT
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-eCH
Confidence            4789999999 9888774 8899999999999998 654 554

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=88.66  E-value=0.46  Score=45.68  Aligned_cols=29  Identities=28%  Similarity=0.440  Sum_probs=24.4

Q ss_pred             cEEeCCCCCCEEe------cCCCcEEEeecCCccc
Q 042435          245 IVHRDISSNNILL------NSNLEAFVADFGTVRL  273 (412)
Q Consensus       245 ivHrDlkp~NILl------~~~~~~kl~DfGla~~  273 (412)
                      ++|+|+.+.||++      +++..++++||-+|..
T Consensus       246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~  280 (401)
T 3g15_A          246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY  280 (401)
T ss_dssp             EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred             eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence            5799999999999      4567799999988763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=87.90  E-value=0.14  Score=47.55  Aligned_cols=40  Identities=8%  Similarity=0.040  Sum_probs=23.9

Q ss_pred             echhhccCCC-ceee-CCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGV-VEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~-ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|||+.| +++. +|. +.++++|+.|++++|++++.+|.
T Consensus        94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~  136 (336)
T 2ast_B           94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN  136 (336)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH
T ss_pred             CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH
Confidence            4566666666 5554 444 45566666666666666665554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=87.88  E-value=0.39  Score=38.25  Aligned_cols=36  Identities=8%  Similarity=0.044  Sum_probs=29.1

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccc
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDG   39 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G   39 (412)
                      .|++|||+.| ++..-+. +..+++|..|+|++|-+.-
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            5889999999 7764444 6789999999999998753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=87.87  E-value=0.13  Score=48.01  Aligned_cols=37  Identities=14%  Similarity=0.171  Sum_probs=31.4

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCcccccccc
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGE   40 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~   40 (412)
                      ..|++|+|+.| +++ ++.+..+++|+.|++|+|++++.
T Consensus       243 ~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~  280 (347)
T 4fmz_A          243 SQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISDI  280 (347)
T ss_dssp             TTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCccCCC
Confidence            46889999999 665 57788899999999999999874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=87.83  E-value=0.056  Score=51.62  Aligned_cols=43  Identities=14%  Similarity=0.137  Sum_probs=35.1

Q ss_pred             eechhhccCCC-ceee----CCC-C--CCCCCCCEEeCccccccc----cCCCCC
Q 042435            3 VLLAFLSISAA-CSGV----VEE-E--PSSPSFLKSDMSFNNLDG----EIPTYL   45 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~----ip~-~--~~~~~l~~~~ls~N~l~G----~iP~~~   45 (412)
                      ..|++|||+.| +++.    +|. +  .++++|+.||||+|.+++    .+|..+
T Consensus       244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l  298 (386)
T 2ca6_A          244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  298 (386)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence            36899999999 8876    544 5  458999999999999999    588743

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=87.61  E-value=0.38  Score=44.47  Aligned_cols=30  Identities=27%  Similarity=0.350  Sum_probs=25.4

Q ss_pred             CCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       242 ~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ...++|+|+++.||+++ + .+.++||+.+..
T Consensus       194 ~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          194 TVLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             CCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             CeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            34689999999999999 4 899999987753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=86.90  E-value=0.092  Score=50.05  Aligned_cols=40  Identities=13%  Similarity=0.147  Sum_probs=31.2

Q ss_pred             echhhccCCC-ce--e---eCC-CCCCCCCCCEEeCcccccc----ccCCC
Q 042435            4 LLAFLSISAA-CS--G---VVE-EEPSSPSFLKSDMSFNNLD----GEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~--G---~ip-~~~~~~~l~~~~ls~N~l~----G~iP~   43 (412)
                      .|++|+|+.| ++  |   .+| .+.++++|+.||||+|.++    +.+|.
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            5788889888 66  4   446 5778888899999999887    66775

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=86.61  E-value=0.67  Score=29.16  Aligned_cols=9  Identities=22%  Similarity=0.604  Sum_probs=3.3

Q ss_pred             HHHHHhhcc
Q 042435           99 GFILLLKGK  107 (412)
Q Consensus        99 ~~~~~~~~~  107 (412)
                      ++++++|+|
T Consensus        30 ~~~~~~RRr   38 (44)
T 2ks1_B           30 GIGLFMRRR   38 (44)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHhhhh
Confidence            333333333

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=84.79  E-value=0.16  Score=48.00  Aligned_cols=33  Identities=27%  Similarity=0.216  Sum_probs=14.7

Q ss_pred             hccCCC-ceeeCCCC-CCCCCCCEEeCcccccccc
Q 042435            8 LSISAA-CSGVVEEE-PSSPSFLKSDMSFNNLDGE   40 (412)
Q Consensus         8 l~~~~~-~~G~ip~~-~~~~~l~~~~ls~N~l~G~   40 (412)
                      ++|+.| ++|.+|.+ ....+|+.||+|+|++++.
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~   37 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSI   37 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChH
Confidence            344444 55544442 2223355555555554443

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=84.77  E-value=0.63  Score=43.94  Aligned_cols=29  Identities=24%  Similarity=0.315  Sum_probs=24.3

Q ss_pred             CCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          243 PSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       243 ~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      ..++|+|+.+.|||++++. +.++||..+.
T Consensus       212 ~~l~HgDl~~~Nil~~~~~-~~lID~e~a~  240 (369)
T 3c5i_A          212 IVFCHNDLQENNIINTNKC-LRLIDFEYSG  240 (369)
T ss_dssp             EEEECSCCCGGGEEECC-C-EEECCCTTCE
T ss_pred             eEEEeCCCCcccEEecCCc-EEEEEecCCC
Confidence            4689999999999998654 8999998775

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=83.53  E-value=0.98  Score=44.27  Aligned_cols=27  Identities=11%  Similarity=-0.012  Sum_probs=20.1

Q ss_pred             eeeeecCceEEEEEEeCC-CcEEEEEec
Q 042435          149 YCIGTGGYDSVYKAELPD-GKVVALKKL  175 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~-~~~vAvK~l  175 (412)
                      +.|+.|-...+|+....+ +..+++|..
T Consensus       114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~  141 (458)
T 2qg7_A          114 QIINGGITNILIKVKDMSKQAKYLIRLY  141 (458)
T ss_dssp             EEECC--CEEEEEEEETTTTEEEEEEEE
T ss_pred             EEcCCCeEeEEEEEEECCCCceEEEEEC
Confidence            568889899999998865 477888875

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=83.19  E-value=0.71  Score=29.01  Aligned_cols=6  Identities=0%  Similarity=0.174  Sum_probs=2.3

Q ss_pred             HHHHhh
Q 042435          100 FILLLK  105 (412)
Q Consensus       100 ~~~~~~  105 (412)
                      +++++|
T Consensus        31 ~~~~RR   36 (44)
T 2l2t_A           31 AVYVRR   36 (44)
T ss_dssp             HHHHHT
T ss_pred             HHHhhh
Confidence            333343

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=82.57  E-value=0.14  Score=48.39  Aligned_cols=40  Identities=18%  Similarity=0.116  Sum_probs=30.8

Q ss_pred             echhhccCCC-ceeeCC----C-CCCCC-CCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVE----E-EPSSP-SFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip----~-~~~~~-~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++||||.| +++..+    . +.+++ +|+.||+|+|++++..|.
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~   69 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD   69 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH
Confidence            3788999998 766654    3 56677 789999999998887664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=80.95  E-value=0.17  Score=49.17  Aligned_cols=41  Identities=10%  Similarity=-0.046  Sum_probs=30.1

Q ss_pred             eechhhccCCC-ceeeCCC-CC-----CCCCCCEEeCccccccc----cCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EP-----SSPSFLKSDMSFNNLDG----EIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~-----~~~~l~~~~ls~N~l~G----~iP~   43 (412)
                      ..|++|||+.| +++..+. +.     ..++|+.||+++|++++    .+|.
T Consensus       341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence            46888999999 7665422 32     26789999999999987    7775

>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}

Probab=80.14  E-value=2.8  Score=36.50  Aligned_cols=108  Identities=11%  Similarity=0.058  Sum_probs=71.0

Q ss_pred             EEecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHH-HHHhCCCCCcEEeCCCCCCEEecCCCcEE
Q 042435          186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALS-YLHHDCTPSIVHRDISSNNILLNSNLEAF  264 (412)
Q Consensus       186 ~~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~-~LH~~~~~~ivHrDlkp~NILl~~~~~~k  264 (412)
                      +..+.+.+.+.|+--+++.=+..+      ..++...+++++..++.-.. +++     .-+|--|.|+||++|.++.++
T Consensus        56 I~~~eD~~~i~y~~~~~~~~f~~i------~~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~NL~f~~~~~p~  124 (219)
T 4ano_A           56 IDVSEDEVKVVIKPPSSFLTFAAI------RKTTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPENLMFNRALEPF  124 (219)
T ss_dssp             EEECSSEEEEEEECCTTCEEHHHH------HTSCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGGEEECTTCCEE
T ss_pred             EEEeCCEEEEEEEcCcccCcHHHH------HhcCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCceEEEeCCCcEE
Confidence            345566666666654333222222      24778889999988877666 555     458999999999999999999


Q ss_pred             EeecCCccccCCCCCCcccccccccccccccccCcccCccccc-HHHHHHHHHHHhCCCCcccc
Q 042435          265 VADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVI-YSFGVVALEVLMGTHPGELL  327 (412)
Q Consensus       265 l~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv-~S~Gvil~elltg~~P~~~~  327 (412)
                      +.-.|+-..+                 +|.-.     + ..|. -++=+++..++.++..|+..
T Consensus       125 i~hRGi~~~l-----------------pP~e~-----~-ee~fl~qyKali~all~~K~~Fe~l  165 (219)
T 4ano_A          125 FLHVGVKESL-----------------PPDEW-----D-DERLLREVKATVLALTEGEYRFDEY  165 (219)
T ss_dssp             ESCCEETTTB-----------------SSCSC-----C-HHHHHHHHHHHHHHHTTCSSCHHHH
T ss_pred             EEEcCCcccC-----------------CCCCC-----C-HHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            9988764432                 23211     1 1232 25677888888898887743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	412
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-44
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	8e-44
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	7e-41
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-40
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	3e-39
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	4e-39
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-38
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	3e-38
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	7e-38
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	8e-38
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	9e-37
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-36
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-36
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-36
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	5e-36
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	6e-36
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	6e-36
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	4e-35
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-34
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	3e-34
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	4e-34
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	8e-34
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	1e-33
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-33
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	4e-33
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-32
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-32
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-32
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	8e-32
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	8e-32
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	1e-31
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	3e-31
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	4e-31
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	7e-31
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	4e-30
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	6e-30
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	9e-30
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	8e-29
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	7e-28
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-27
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	3e-27
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	5e-27
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-26
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	5e-26
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	4e-25
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	7e-25
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	4e-24
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-23
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-23
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	4e-23
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	5e-23
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-22
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-22
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	3e-22
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	7e-22
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-21
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	3e-19
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	7e-19
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	7e-16
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	5e-14
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-13
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-13
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	3e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (388), Expect = 2e-44
 Identities = 55/273 (20%), Positives = 110/273 (40%), Gaps = 42/273 (15%)

Query: 145 FHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSA-------------------- 184
             +   IG+G + +VYK +      VA+K L+ +                          
Sbjct: 10  ITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67

Query: 185 --FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCT 242
                 +   +  + ++ E  SL+  L   +   +    + ++I +  A  + YLH    
Sbjct: 68  LFMGYSTAPQLAIVTQWCEGSSLYHHLHIIET--KFEMIKLIDIARQTAQGMDYLHA--- 122

Query: 243 PSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ--AGTYGYIALELVYTM- 299
            SI+HRD+ SNNI L+ +L   + DFG   +    S +   +  +G+  ++A E++    
Sbjct: 123 KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQD 182

Query: 300 --VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII 357
               + +  +Y+FG+V  E++ G  P        S+   +  +I ++ +    P   K+ 
Sbjct: 183 KNPYSFQSDVYAFGIVLYELMTGQLP-------YSNINNRDQIIFMVGRGYLSPDLSKVR 235

Query: 358 QDII-LVSTIALACLRSKPKSRPTMQRISQELE 389
            +    +  +   CL+ K   RP   +I   +E
Sbjct: 236 SNCPKAMKRLMAECLKKKRDERPLFPQILASIE 268

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (383), Expect = 8e-44
 Identities = 54/267 (20%), Positives = 102/267 (38%), Gaps = 34/267 (12%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV---------------- 186
           E   +   +G G +  V+         VA+K L        AF+                
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVR 72

Query: 187 ---VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
              V + + ++ I EYME GSL   L+     I+L   + +++   +A  ++++      
Sbjct: 73  LYAVVTQEPIYIITEYMENGSLVDFLK-TPSGIKLTINKLLDMAAQIAEGMAFIEERN-- 129

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-RTLQAGTYGYIALELVYTMVVT 302
             +HRD+ + NIL++  L   +ADFG  RL++ +    R        + A E +     T
Sbjct: 130 -YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFT 188

Query: 303 EKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL 362
            K  ++SFG++  E++                     +I  L +           +++  
Sbjct: 189 IKSDVWSFGILLTEIVTHGRI-------PYPGMTNPEVIQNLERGYRMVRPDNCPEELY- 240

Query: 363 VSTIALACLRSKPKSRPTMQRISQELE 389
              +   C + +P+ RPT   +   LE
Sbjct: 241 --QLMRLCWKERPEDRPTFDYLRSVLE 265

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (364), Expect = 7e-41
 Identities = 57/267 (21%), Positives = 102/267 (38%), Gaps = 34/267 (12%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFV---------------- 186
           E   +   +G G +  V+         VA+K L        AF+                
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQ 76

Query: 187 ---VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
              V S + ++ + EYM +GSL   L+ +         + +++   +A  ++Y+      
Sbjct: 77  LYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYL-RLPQLVDMAAQIASGMAYVERMN-- 133

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLL-DVDSSNRTLQAGTYGYIALELVYTMVVT 302
             VHRD+ + NIL+  NL   VADFG  RL+ D + + R        + A E       T
Sbjct: 134 -YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT 192

Query: 303 EKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL 362
            K  ++SFG++  E+                      ++D + +    P   +  + +  
Sbjct: 193 IKSDVWSFGILLTELTTKGRV-------PYPGMVNREVLDQVERGYRMPCPPECPESLH- 244

Query: 363 VSTIALACLRSKPKSRPTMQRISQELE 389
              +   C R +P+ RPT + +   LE
Sbjct: 245 --DLMCQCWRKEPEERPTFEYLQAFLE 269

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (360), Expect = 2e-40
 Identities = 56/269 (20%), Positives = 103/269 (38%), Gaps = 40/269 (14%)

Query: 145 FHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDS-------------------- 183
           + + Y IGTG Y    K     DGK++  K+L +    ++                    
Sbjct: 6   YEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNI 65

Query: 184 -----AFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIE-LNWTRRMNIVKSVAHALSYL 237
                  +  +   ++ + EY E G L  V+    +  + L+    + ++  +  AL   
Sbjct: 66  VRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKEC 125

Query: 238 H--HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALEL 295
           H   D   +++HRD+   N+ L+      + DFG  R+L+ D+S      GT  Y++ E 
Sbjct: 126 HRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQ 185

Query: 296 VYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK 355
           +  M   EK  I+S G +  E+     P        ++   K +   I   +    I  +
Sbjct: 186 MNRMSYNEKSDIWSLGCLLYELCALMPP-------FTAFSQKELAGKIREGKF-RRIPYR 237

Query: 356 IIQDIILVSTIALACLRSKPKSRPTMQRI 384
              ++     I    L  K   RP+++ I
Sbjct: 238 YSDELN---EIITRMLNLKDYHRPSVEEI 263

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (351), Expect = 3e-39
 Identities = 47/273 (17%), Positives = 95/273 (34%), Gaps = 37/273 (13%)

Query: 138 LIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF------------ 185
           +ID +E   ++  IG+G +  V+     +   VA+K +      +  F            
Sbjct: 1   VIDPSELTFVQ-EIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSH 59

Query: 186 --------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL 237
                   V      +  ++E+ME G L   LR             + +   V   +   
Sbjct: 60  PKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFA--AETLLGMCLDVCEGM--- 114

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ-AGTYGYIALELV 296
            +     ++HRD+++ N L+  N    V+DFG  R +  D    +        + + E+ 
Sbjct: 115 AYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVF 174

Query: 297 YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI 356
                + K  ++SFGV+  EV                +     +++ +         +  
Sbjct: 175 SFSRYSSKSDVWSFGVLMWEVFSEGKI-------PYENRSNSEVVEDISTGFRLYKPRLA 227

Query: 357 IQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              +     I   C + +P+ RP   R+ ++L 
Sbjct: 228 STHVY---QIMNHCWKERPEDRPAFSRLLRQLA 257

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  139 bits (352), Expect = 4e-39
 Identities = 60/289 (20%), Positives = 109/289 (37%), Gaps = 42/289 (14%)

Query: 145 FHIRYCIGTGGYDSVYKAELPD-GKVVALKKLHHSETEDSAF------------------ 185
             +++ +G G Y  VY+         VA+K L     E   F                  
Sbjct: 19  ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQL 78

Query: 186 --VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
             V       + I E+M  G+L   LR+ +   E++    + +   ++ A+ YL      
Sbjct: 79  LGVCTREPPFYIITEFMTYGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLEK---K 134

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA-GTYGYIALELVYTMVVT 302
           + +HRD+++ N L+  N    VADFG  RL+  D+      A     + A E +     +
Sbjct: 135 NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFS 194

Query: 303 EKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL 362
            K  +++FGV+  E+          + LS        + ++L +       +   + +  
Sbjct: 195 IKSDVWAFGVLLWEIATYGMSPYPGIDLSQ-------VYELLEKDYRMERPEGCPEKVY- 246

Query: 363 VSTIALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPEMRNQEM 411
              +  AC +  P  RP+   I Q  E         +E SI +   +E+
Sbjct: 247 --ELMRACWQWNPSDRPSFAEIHQAFE------TMFQESSISDEVEKEL 287

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (346), Expect = 2e-38
 Identities = 50/287 (17%), Positives = 100/287 (34%), Gaps = 53/287 (18%)

Query: 145 FHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDS--------------------A 184
             +   IG G +  V   +   G  VA+K + +  T  +                     
Sbjct: 9   LKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLG 67

Query: 185 FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPS 244
            +V     ++ + EYM +GSL   LR    ++ L     +     V  A+ YL      +
Sbjct: 68  VIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSV-LGGDCLLKFSLDVCEAMEYLEG---NN 123

Query: 245 IVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEK 304
            VHRD+++ N+L++ +  A V+DFG  +     SS +        + A E +     + K
Sbjct: 124 FVHRDLAARNVLVSEDNVAKVSDFGLTKEA---SSTQDTGKLPVKWTAPEALREKKFSTK 180

Query: 305 CVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVS 364
             ++SFG++  E+          + L         ++  + +             +    
Sbjct: 181 SDVWSFGILLWEIYSFGRVPYPRIPLKD-------VVPRVEKGYKMDAPDGCPPAVY--- 230

Query: 365 TIALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPEMRNQEM 411
            +   C       RP+  ++ ++LE                ++  E+
Sbjct: 231 EVMKNCWHLDAAMRPSFLQLREQLE---------------HIKTHEL 262

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (344), Expect = 3e-38
 Identities = 56/273 (20%), Positives = 99/273 (36%), Gaps = 39/273 (14%)

Query: 139 IDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAF------------- 185
           ID  +   ++  +GTG +  V   +      VA+K +      +  F             
Sbjct: 1   IDPKDLTFLK-ELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHE 59

Query: 186 -------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
                  V    + +F I EYM  G L   LR+          + + + K V  A+ YL 
Sbjct: 60  KLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRH--RFQTQQLLEMCKDVCEAMEYLE 117

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL-DVDSSNRTLQAGTYGYIALELVY 297
                  +HRD+++ N L+N      V+DFG  R + D + ++         +   E++ 
Sbjct: 118 SKQ---FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLM 174

Query: 298 TMVVTEKCVIYSFGVVALEVL-MGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI 356
               + K  I++FGV+  E+  +G  P E                + + Q L        
Sbjct: 175 YSKFSSKSDIWAFGVLMWEIYSLGKMPYERF--------TNSETAEHIAQGLRLYRPHLA 226

Query: 357 IQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            + +    TI  +C   K   RPT + +   + 
Sbjct: 227 SEKVY---TIMYSCWHEKADERPTFKILLSNIL 256

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (344), Expect = 7e-38
 Identities = 59/289 (20%), Positives = 104/289 (35%), Gaps = 54/289 (18%)

Query: 150 CIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSAFVV---------------------- 187
            IG G +  V++ +   G+ VA+K     E                              
Sbjct: 10  SIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNK 68

Query: 188 --YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC---- 241
              +   ++ + +Y E GSLF  L        +     + +  S A  L++LH +     
Sbjct: 69  DNGTWTQLWLVSDYHEHGSLFDYLNRYT----VTVEGMIKLALSTASGLAHLHMEIVGTQ 124

Query: 242 -TPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN----RTLQAGTYGYIALELV 296
             P+I HRD+ S NIL+  N    +AD G     D  +         + GT  Y+A E++
Sbjct: 125 GKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVL 184

Query: 297 YTMV------VTEKCVIYSFGVVALEVLMGTHPGELLLSLS--------SSSGPKIMLID 342
              +        ++  IY+ G+V  E+      G +             S    + M   
Sbjct: 185 DDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKV 244

Query: 343 ILYQRLSPPINQKI--IQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           +  Q+L P I  +    + + +++ I   C  +   +R T  RI + L 
Sbjct: 245 VCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLS 293

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (344), Expect = 8e-38
 Identities = 51/294 (17%), Positives = 95/294 (32%), Gaps = 58/294 (19%)

Query: 143 EYFHIRYCIGTGGYDSVYKAEL------PDGKVVALKKLHHSETEDSAF----------- 185
                   +G G +  V +A             VA+K L  S                  
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82

Query: 186 ------------VVYSPQCMFFIYEYMERGSLFCVLRD---------------DDEAIEL 218
                                 I EY   G L   LR                +D+ + L
Sbjct: 83  LGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELAL 142

Query: 219 NWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS 278
           +    ++    VA  +++L      + +HRD+++ NILL       + DFG  R +  DS
Sbjct: 143 DLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNILLTHGRITKICDFGLARDIKNDS 199

Query: 279 SN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGP 336
           +   +        ++A E ++  V T +  ++S+G+   E+          + + S    
Sbjct: 200 NYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDS---- 255

Query: 337 KIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEG 390
                 ++ +       +    ++     I   C  + P  RPT ++I Q +E 
Sbjct: 256 --KFYKMIKEGFRMLSPEHAPAEMY---DIMKTCWDADPLKRPTFKQIVQLIEK 304

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  133 bits (336), Expect = 9e-37
 Identities = 52/296 (17%), Positives = 96/296 (32%), Gaps = 64/296 (21%)

Query: 145 FHIRYCIGTGGYDSVYKAELP------DGKVVALKKLHHSETEDSA-------------- 184
                 IG G +  V++A  P         +VA+K L    + D                
Sbjct: 15  IEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFD 74

Query: 185 --------FVVYSPQCMFFIYEYMERGSLFCVLRD---------------------DDEA 215
                    V    + M  ++EYM  G L   LR                          
Sbjct: 75  NPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGP 134

Query: 216 IELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD 275
             L+   ++ I + VA  ++YL        VHRD+++ N L+  N+   +ADFG  R + 
Sbjct: 135 PPLSCAEQLCIARQVAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSRNIY 191

Query: 276 VDSSNR--TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSS 333
                +     A    ++  E ++    T +  ++++GVV  E+          ++    
Sbjct: 192 SADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEE- 250

Query: 334 SGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                 +I  +         +    ++     +   C    P  RP+   I + L+
Sbjct: 251 ------VIYYVRDGNILACPENCPLELY---NLMRLCWSKLPADRPSFCSIHRILQ 297

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (333), Expect = 1e-36
 Identities = 62/266 (23%), Positives = 105/266 (39%), Gaps = 47/266 (17%)

Query: 145 FHIRYCIGTGGYDSVYKAELP-DGKVVALKKLHHSETEDSAF------------------ 185
           F I   +G G + +VY A       ++ALK L  ++ E +                    
Sbjct: 8   FEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPN 67

Query: 186 ------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH 239
                   +    ++ I EY   G+++  L+   +    +  R    +  +A+ALSY H 
Sbjct: 68  ILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK---FDEQRTATYITELANALSYCHS 124

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM 299
                ++HRDI   N+LL S  E  +ADFG        SS RT   GT  Y+  E++   
Sbjct: 125 ---KRVIHRDIKPENLLLGSAGELKIADFGWSV--HAPSSRRTTLCGTLDYLPPEMIEGR 179

Query: 300 VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN-QKIIQ 358
           +  EK  ++S GV+  E L+G  P         ++  +     I     + P    +  +
Sbjct: 180 MHDEKVDLWSLGVLCYEFLVGKPP-------FEANTYQETYKRISRVEFTFPDFVTEGAR 232

Query: 359 DIILVSTIALACLRSKPKSRPTMQRI 384
           D+I         L+  P  RP ++ +
Sbjct: 233 DLI------SRLLKHNPSQRPMLREV 252

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (337), Expect = 1e-36
 Identities = 61/299 (20%), Positives = 103/299 (34%), Gaps = 62/299 (20%)

Query: 141 ATEYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETE----------------DS 183
             + F     +G G    V+K    P G V+A K +H                     +S
Sbjct: 4   KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNS 63

Query: 184 AFVV------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL 237
            ++V      YS   +    E+M+ GSL  VL+       +       +  +V   L+YL
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGR---IPEQILGKVSIAVIKGLTYL 120

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVY 297
                  I+HRD+  +NIL+NS  E  + DFG    L    S      GT  Y++ E + 
Sbjct: 121 REKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLI--DSMANSFVGTRSYMSPERLQ 176

Query: 298 TMVVTEKCVIYSFGVVALEVLMGTHP------------------GELLLSLSSSSGPKIM 339
               + +  I+S G+  +E+ +G +P                  G+   +      P   
Sbjct: 177 GTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRP 236

Query: 340 LIDILYQRLSPPINQKIIQDIILVSTIAL--------------ACLRSKPKSRPTMQRI 384
           L         P    +++  I+      L               CL   P  R  ++++
Sbjct: 237 LSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQL 295

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (333), Expect = 2e-36
 Identities = 51/267 (19%), Positives = 92/267 (34%), Gaps = 44/267 (16%)

Query: 151 IGTGGYDSVYKAEL---PDGKVVALKKLHHSETEDSA---------------------FV 186
           +G G + SV +           VA+K L     +                          
Sbjct: 17  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIG 76

Query: 187 VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIV 246
           V   + +  + E    G L   L    E  E+  +    ++  V+  + YL      + V
Sbjct: 77  VCQAEALMLVMEMAGGGPLHKFLVGKRE--EIPVSNVAELLHQVSMGMKYLEE---KNFV 131

Query: 247 HRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ---AGTYGYIALELVYTMVVTE 303
           HRD+++ N+LL +   A ++DFG  + L  D S  T +        + A E +     + 
Sbjct: 132 HRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSS 191

Query: 304 KCVIYSFGVVALEVL-MGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIIL 362
           +  ++S+GV   E L  G  P           GP++M    + Q        +   ++  
Sbjct: 192 RSDVWSYGVTMWEALSYGQKP------YKKMKGPEVM--AFIEQGKRMECPPECPPELY- 242

Query: 363 VSTIALACLRSKPKSRPTMQRISQELE 389
              +   C   K + RP    + Q + 
Sbjct: 243 --ALMSDCWIYKWEDRPDFLTVEQRMR 267

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 5e-36
 Identities = 48/270 (17%), Positives = 89/270 (32%), Gaps = 45/270 (16%)

Query: 144 YFHIRYCIGTGGYDSVYKAELPD-GKVVALKKLHHSETEDSA------------------ 184
           +      IG G + +VYK    +    VA  +L   +   S                   
Sbjct: 10  FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPN 69

Query: 185 ---------FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALS 235
                      V   +C+  + E M  G+L   L+       +      +  + +   L 
Sbjct: 70  IVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKV---MKIKVLRSWCRQILKGLQ 126

Query: 236 YLHHDCTPSIVHRDISSNNILLNS-NLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE 294
           +LH    P I+HRD+  +NI +        + D G   L     +      GT  ++A E
Sbjct: 127 FLHTRT-PPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAV--IGTPEFMAPE 183

Query: 295 LVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ 354
            +Y     E   +Y+FG+  LE+    +P       S       +   +         ++
Sbjct: 184 -MYEEKYDESVDVYAFGMCMLEMATSEYP------YSECQNAAQIYRRVTSGVKPASFDK 236

Query: 355 KIIQDIILVSTIALACLRSKPKSRPTMQRI 384
             I ++     I   C+R     R +++ +
Sbjct: 237 VAIPEVK---EIIEGCIRQNKDERYSIKDL 263

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  131 bits (331), Expect = 6e-36
 Identities = 67/295 (22%), Positives = 105/295 (35%), Gaps = 55/295 (18%)

Query: 135 YENLIDATEYFH---------IRYCIGTGGYDSVYKAELP----DGKVVALKKLHHSETE 181
           +E+  +A   F          I   IG G +  V    L         VA+K L    TE
Sbjct: 9   FEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTE 68

Query: 182 DSA----------------------FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELN 219
                                     VV     +  I E+ME GSL   LR +D      
Sbjct: 69  KQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQF--T 126

Query: 220 WTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS 279
             + + +++ +A  + YL        VHRD+++ NIL+NSNL   V+DFG  R L+ D+S
Sbjct: 127 VIQLVGMLRGIAAGMKYLADMN---YVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTS 183

Query: 280 NRTL-----QAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSS 334
           + T            + A E +     T    ++S+G+V  EV+                
Sbjct: 184 DPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGER-------PYWD 236

Query: 335 GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                +I+ + Q    P        +     + L C +     RP   +I   L+
Sbjct: 237 MTNQDVINAIEQDYRLPPPMDCPSALH---QLMLDCWQKDRNHRPKFGQIVNTLD 288

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (330), Expect = 6e-36
 Identities = 57/291 (19%), Positives = 112/291 (38%), Gaps = 46/291 (15%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF------------- 185
           D  + +     IG G   +VY A ++  G+ VA+++++  +                   
Sbjct: 17  DPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKN 76

Query: 186 --------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL 237
                          ++ + EY+  GSL  V+ +       +  +   + +    AL +L
Sbjct: 77  PNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCM----DEGQIAAVCRECLQALEFL 132

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVY 297
           H +    ++HRDI S+NILL  +    + DFG    +  + S R+   GT  ++A E+V 
Sbjct: 133 HSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVT 189

Query: 298 TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII 357
                 K  I+S G++A+E++ G  P        + +  + + +            +K+ 
Sbjct: 190 RKAYGPKVDIWSLGIMAIEMIEGEPP------YLNENPLRALYLIATNGTPELQNPEKLS 243

Query: 358 QDIILVSTIALACLRSKPKSRPTMQ--------RISQELEGKTPMKKGLKE 400
                       CL    + R + +        +I++ L   TP+    KE
Sbjct: 244 AIFR---DFLNRCLDMDVEKRGSAKELLQHQFLKIAKPLSSLTPLIAAAKE 291

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (324), Expect = 4e-35
 Identities = 50/280 (17%), Positives = 102/280 (36%), Gaps = 44/280 (15%)

Query: 135 YENL---IDATEYFHIRYCIGTGGYDSVYKAELPD-GKVVALKKLHHSETEDSA------ 184
           YE++   ++  +++ I   +G G +  VYKA+  +   + A K +     E+        
Sbjct: 1   YEHVTRDLNPEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEI 60

Query: 185 ---------------FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS 229
                             Y    ++ + E+   G++  V+ + +    L  ++   + K 
Sbjct: 61  DILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERP--LTESQIQVVCKQ 118

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYG 289
              AL+YLH      I+HRD+ + NIL   + +  +ADFG           R    GT  
Sbjct: 119 TLDALNYLHD---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPY 175

Query: 290 YIALELVYTMV-----VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDIL 344
           ++A E+V            K  ++S G+  +E+     P          +  +++L    
Sbjct: 176 WMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPP------HHELNPMRVLLKIAK 229

Query: 345 YQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
            +  +     +   +          CL     +R T  ++
Sbjct: 230 SEPPTLAQPSRWSSNFK---DFLKKCLEKNVDARWTTSQL 266

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 1e-34
 Identities = 49/298 (16%), Positives = 89/298 (29%), Gaps = 63/298 (21%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPD------GKVVALKKLHH--SETEDSAF--------- 185
           E       +G+G +  V  A             VA+K L      +E  A          
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 96

Query: 186 ------------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIE---------------- 217
                              ++ I+EY   G L   LR   E                   
Sbjct: 97  LGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEE 156

Query: 218 ----LNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL 273
               L +   +     VA  + +L      S VHRD+++ N+L+       + DFG  R 
Sbjct: 157 DLNVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLAARNVLVTHGKVVKICDFGLARD 213

Query: 274 LDVDSSNRTLQ--AGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS 331
           +  DS+            ++A E ++  + T K  ++S+G++  E+              
Sbjct: 214 IMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVN------PY 267

Query: 332 SSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                      ++             ++I     I  +C     + RP+   ++  L 
Sbjct: 268 PGIPVDANFYKLIQNGFKMDQPFYATEEIY---IIMQSCWAFDSRKRPSFPNLTSFLG 322

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 3e-34
 Identities = 48/268 (17%), Positives = 93/268 (34%), Gaps = 46/268 (17%)

Query: 151 IGTGGYDSVYKAELPD---GKVVALKKLHHSETEDSA----------------------F 185
           +G+G + +V K         K VA+K L +   + +                        
Sbjct: 15  LGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMI 74

Query: 186 VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
            +   +    + E  E G L   L+ +     +     + +V  V+  + YL      + 
Sbjct: 75  GICEAESWMLVMEMAELGPLNKYLQQNRH---VKDKNIIELVHQVSMGMKYLEE---SNF 128

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ---AGTYGYIALELVYTMVVT 302
           VHRD+++ N+LL +   A ++DFG  + L  D +    Q        + A E +     +
Sbjct: 129 VHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFS 188

Query: 303 EKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDII 361
            K  ++SFGV+  E    G  P           G ++    +L +           +++ 
Sbjct: 189 SKSDVWSFGVLMWEAFSYGQKP------YRGMKGSEVT--AMLEKGERMGCPAGCPREMY 240

Query: 362 LVSTIALACLRSKPKSRPTMQRISQELE 389
               +   C     ++RP    +   L 
Sbjct: 241 ---DLMNLCWTYDVENRPGFAAVELRLR 265

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 4e-34
 Identities = 58/279 (20%), Positives = 92/279 (32%), Gaps = 41/279 (14%)

Query: 145 FHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSA------------------- 184
           + +   +G G Y  V  A      + VA+K +      D                     
Sbjct: 7   WDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVV 66

Query: 185 ---FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC 241
                       +   EY   G LF  +  D   I +           +   + YLH   
Sbjct: 67  KFYGHRREGNIQYLFLEYCSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGVVYLHG-- 121

Query: 242 TPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ--AGTYGYIALELVYTM 299
              I HRDI   N+LL+      ++DFG   +   ++  R L    GT  Y+A EL+   
Sbjct: 122 -IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRR 180

Query: 300 -VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ 358
               E   ++S G+V   +L G  P          S       D   ++      +KI  
Sbjct: 181 EFHAEPVDVWSCGIVLTAMLAGELP------WDQPSDSCQEYSDWKEKKTYLNPWKKIDS 234

Query: 359 DIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKG 397
             +    +    L   P +R T+  I ++     P+KKG
Sbjct: 235 APL---ALLHKILVENPSARITIPDIKKDRWYNKPLKKG 270

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  125 bits (316), Expect = 8e-34
 Identities = 50/275 (18%), Positives = 96/275 (34%), Gaps = 48/275 (17%)

Query: 140 DATEYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSAF------------- 185
           D  + F     IG G + +VY A  + + +VVA+KK+ +S  + +               
Sbjct: 12  DPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQK 71

Query: 186 -----------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHAL 234
                              + + EY    +   +         L       +       L
Sbjct: 72  LRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKP---LQEVEIAAVTHGALQGL 128

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE 294
           +YLH     +++HRD+ + NILL+      + DFG+  ++   +S      GT  ++A E
Sbjct: 129 AYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANS----FVGTPYWMAPE 181

Query: 295 LVYTM---VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP 351
           ++  M       K  ++S G+  +E+     P         +      L  I        
Sbjct: 182 VILAMDEGQYDGKVDVWSLGITCIELAERKPPLF-------NMNAMSALYHIAQNESPAL 234

Query: 352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQ 386
            +    +          +CL+  P+ RPT + + +
Sbjct: 235 QSGHWSEYFR---NFVDSCLQKIPQDRPTSEVLLK 266

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 1e-33
 Identities = 65/290 (22%), Positives = 106/290 (36%), Gaps = 45/290 (15%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPDG-----KVVALKKLHHSETEDSA------------- 184
                +  IG G +  VYK  L          VA+K L    TE                
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF 66

Query: 185 ---------FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALS 235
                     V+   + M  I EYME G+L   LR+ D   E +  + + +++ +A  + 
Sbjct: 67  SHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKD--GEFSVLQLVGMLRGIAAGM- 123

Query: 236 YLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN---RTLQAGTYGYIA 292
              +    + VHRD+++ NIL+NSNL   V+DFG  R+L+ D       +       + A
Sbjct: 124 --KYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTA 181

Query: 293 LELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI 352
            E +     T    ++SFG+V  EV+         LS          ++  +      P 
Sbjct: 182 PEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE-------VMKAINDGFRLPT 234

Query: 353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEIS 402
                  I     + + C + +   RP    I   L+        LK ++
Sbjct: 235 PMDCPSAIY---QLMMQCWQQERARRPKFADIVSILDKLIRAPDSLKTLA 281

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 2e-33
 Identities = 56/301 (18%), Positives = 104/301 (34%), Gaps = 53/301 (17%)

Query: 145 FHIRYCIGTGGYDSVYKAELPDG---KVVALKKLHHSETEDSA----------------- 184
              +  IG G +  V KA +         A+K++    ++D                   
Sbjct: 12  IKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHP 71

Query: 185 ------FVVYSPQCMFFIYEYMERGSLFCVLR-------------DDDEAIELNWTRRMN 225
                         ++   EY   G+L   LR              +  A  L+  + ++
Sbjct: 72  NIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLH 131

Query: 226 IVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA 285
               VA  + YL        +HRD+++ NIL+  N  A +ADFG  R  +     +T+  
Sbjct: 132 FAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVAKIADFGLSRGQE-VYVKKTMGR 187

Query: 286 GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY 345
               ++A+E +   V T    ++S+GV+  E++         ++ +        L + L 
Sbjct: 188 LPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE-------LYEKLP 240

Query: 346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEISIPE 405
           Q            ++     +   C R KP  RP+  +I   L      +K     ++ E
Sbjct: 241 QGYRLEKPLNCDDEVY---DLMRQCWREKPYERPSFAQILVSLNRMLEERKTYVNTTLYE 297

Query: 406 M 406
            
Sbjct: 298 K 298

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 4e-33
 Identities = 54/280 (19%), Positives = 107/280 (38%), Gaps = 44/280 (15%)

Query: 138 LIDATEYFHIRYCIGTGGYDSVYKAE-LPDGKV----VALKKLHHSETEDSA-------- 184
           ++  TE+  I+  +G+G + +VYK   +P+G+     VA+K+L  + +  +         
Sbjct: 5   ILKETEFKKIK-VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAY 63

Query: 185 -------------FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
                          +     +  I + M  G L   +R+  + I       +N    +A
Sbjct: 64  VMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNI--GSQYLLNWCVQIA 121

Query: 232 HALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ--AGTYG 289
             ++YL       +VHRD+++ N+L+ +     + DFG  +LL  +      +       
Sbjct: 122 KGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIK 178

Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS 349
           ++ALE +   + T +  ++S+GV   E++                 P   +  IL +   
Sbjct: 179 WMALESILHRIYTHQSDVWSYGVTVWELMTFGSK-------PYDGIPASEISSILEKGER 231

Query: 350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            P       D+     I + C      SRP  + +  E  
Sbjct: 232 LPQPPICTIDVY---MIMVKCWMIDADSRPKFRELIIEFS 268

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 2e-32
 Identities = 53/297 (17%), Positives = 103/297 (34%), Gaps = 52/297 (17%)

Query: 143 EYFHIRYCIGTGGYDSVYKAEL------PDGKVVALKKLHHSETEDSA------------ 184
           E   +   +G G +  VY+              VA+K ++ + +                
Sbjct: 20  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE 79

Query: 185 ----------FVVYSPQCMFFIYEYMERGSLFCVLR-------DDDEAIELNWTRRMNIV 227
                      VV   Q    I E M RG L   LR       ++      + ++ + + 
Sbjct: 80  FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMA 139

Query: 228 KSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQA-- 285
             +A  ++YL+ +     VHRD+++ N ++  +    + DFG  R +      R      
Sbjct: 140 GEIADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGL 196

Query: 286 GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY 345
               +++ E +   V T    ++SFGVV  E+          LS          ++  + 
Sbjct: 197 LPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ-------VLRFVM 249

Query: 346 QRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKKGLKEIS 402
           +             +     +   C +  PK RP+   I   ++ +  M+ G +E+S
Sbjct: 250 EGGLLDKPDNCPDMLF---ELMRMCWQYNPKMRPSFLEIISSIKEE--MEPGFREVS 301

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 2e-32
 Identities = 49/292 (16%), Positives = 88/292 (30%), Gaps = 57/292 (19%)

Query: 143 EYFHIRYCIGTGGYDSVYKA------ELPDGKVVALKKLHHSETEDSA------------ 184
           +   +   +G G +  V +A      +    + VA+K L    T                
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 72

Query: 185 ------------FVVYSPQCMFFIYEYMERGSLFCVLR-------------DDDEAIELN 219
                               +  I E+ + G+L   LR             +D     L 
Sbjct: 73  IGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLT 132

Query: 220 WTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS 279
               +     VA  + +L        +HRD+++ NILL+      + DFG  R +  D  
Sbjct: 133 LEHLICYSFQVAKGMEFLAS---RKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 189

Query: 280 N--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPK 337
              +        ++A E ++  V T +  ++SFGV+  E+                    
Sbjct: 190 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGAS------PYPGVKID 243

Query: 338 IMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                 L +            ++       L C   +P  RPT   + + L 
Sbjct: 244 EEFCRRLKEGTRMRAPDYTTPEMY---QTMLDCWHGEPSQRPTFSELVEHLG 292

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 2e-32
 Identities = 50/277 (18%), Positives = 89/277 (32%), Gaps = 46/277 (16%)

Query: 144 YFHIRYCIGTGGYDSVYKAELPDGK----VVALKKLHHSETEDSA--------------- 184
             H    IG G +  VY   L D        A+K L+                       
Sbjct: 28  IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 87

Query: 185 --------FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSY 236
                     + S      +  YM+ G L   +R++     +       +  +       
Sbjct: 88  PNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKG----- 142

Query: 237 LHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS----SNRTLQAGTYGYIA 292
           +    +   VHRD+++ N +L+      VADFG  R +         N+T       ++A
Sbjct: 143 MKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 202

Query: 293 LELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI 352
           LE + T   T K  ++SFGV+  E++    P    ++          +   L Q      
Sbjct: 203 LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD-------ITVYLLQGRRLLQ 255

Query: 353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
            +     +     + L C   K + RP+   +   + 
Sbjct: 256 PEYCPDPLY---EVMLKCWHPKAEMRPSFSELVSRIS 289

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 8e-32
 Identities = 50/275 (18%), Positives = 90/275 (32%), Gaps = 47/275 (17%)

Query: 145 FHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF------------------ 185
           F     +G G + +V  A EL   +  A+K L                            
Sbjct: 10  FKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF 69

Query: 186 ------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH 239
                      + ++F   Y + G L   +R        + T        +  AL YLH 
Sbjct: 70  FVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGS---FDETCTRFYTAEIVSALEYLHG 126

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ--AGTYGYIALELVY 297
                I+HRD+   NILLN ++   + DFGT ++L  +S         GT  Y++ EL+ 
Sbjct: 127 ---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLT 183

Query: 298 TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN-QKI 356
                +   +++ G +  +++ G  P         +    ++   I+      P      
Sbjct: 184 EKSACKSSDLWALGCIIYQLVAGLPPFR-------AGNEYLIFQKIIKLEYDFPEKFFPK 236

Query: 357 IQDIILVSTIALACLRSKPKSRPTMQRISQELEGK 391
            +D++         L      R   + +      K
Sbjct: 237 ARDLV------EKLLVLDATKRLGCEEMEGYGPLK 265

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (300), Expect = 8e-32
 Identities = 54/275 (19%), Positives = 86/275 (31%), Gaps = 44/275 (16%)

Query: 145 FHIRYCIGTGGYDSVYKAELP----DGKVVALKKLHHSETEDSAFV-------------- 186
             +   +G G +  V + E          VA+K L          +              
Sbjct: 10  LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD 69

Query: 187 ---------VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL 237
                    V     M  + E    GSL   LR       L    R      VA  + YL
Sbjct: 70  HRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSR--YAVQVAEGMGYL 127

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ---AGTYGYIALE 294
                   +HRD+++ N+LL +     + DFG +R L  +  +  +Q      + + A E
Sbjct: 128 ESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPE 184

Query: 295 LVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ 354
            + T   +     + FGV   E+                     +L  I  +    P  +
Sbjct: 185 SLKTRTFSHASDTWMFGVTLWEMFTYGQE------PWIGLNGSQILHKIDKEGERLPRPE 238

Query: 355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              QDI     + + C   KP+ RPT   +   L 
Sbjct: 239 DCPQDIY---NVMVQCWAHKPEDRPTFVALRDFLL 270

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (300), Expect = 1e-31
 Identities = 49/293 (16%), Positives = 97/293 (33%), Gaps = 59/293 (20%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELP--------DGKVVALKKLHHSETEDSA---------- 184
           +   +   +G G +  V  AE              VA+K L    TE             
Sbjct: 13  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 72

Query: 185 -------------FVVYSPQCMFFIYEYMERGSLFCVLR-------------DDDEAIEL 218
                                ++ I EY  +G+L   L+               +   +L
Sbjct: 73  KMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 132

Query: 219 NWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS 278
           +    ++    VA  + YL        +HRD+++ N+L+  +    +ADFG  R +    
Sbjct: 133 SSKDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 189

Query: 279 SNRTLQA--GTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGP 336
             +          ++A E ++  + T +  ++SFGV+  E+                  P
Sbjct: 190 YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGS-------PYPGVP 242

Query: 337 KIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
              L  +L +            ++     +   C  + P  RPT +++ ++L+
Sbjct: 243 VEELFKLLKEGHRMDKPSNCTNELY---MMMRDCWHAVPSQRPTFKQLVEDLD 292

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 3e-31
 Identities = 57/292 (19%), Positives = 106/292 (36%), Gaps = 47/292 (16%)

Query: 143 EYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF---------------- 185
           E + I   +G G +  V++  E    K    K +    T+                    
Sbjct: 5   EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNIL 64

Query: 186 ----VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC 241
                  S + +  I+E++    +F  +     A ELN    ++ V  V  AL +LH   
Sbjct: 65  HLHESFESMEELVMIFEFISGLDIFERINT--SAFELNEREIVSYVHQVCEALQFLHS-- 120

Query: 242 TPSIVHRDISSNNILLNSNLEAFV--ADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM 299
             +I H DI   NI+  +   + +   +FG  R L    + R L      Y A E+    
Sbjct: 121 -HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLF-TAPEYYAPEVHQHD 178

Query: 300 VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP--INQKII 357
           VV+    ++S G +   +L G +P         +   + ++ +I+    +      ++I 
Sbjct: 179 VVSTATDMWSLGTLVYVLLSGINPFL-------AETNQQIIENIMNAEYTFDEEAFKEIS 231

Query: 358 QDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP-MKKGLKEISIPEMRN 408
            + +         L  + KSR T     Q      P +K+ ++ +S   +R 
Sbjct: 232 IEAM---DFVDRLLVKERKSRMTASEALQH-----PWLKQKIERVSTKVIRT 275

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (295), Expect = 4e-31
 Identities = 50/274 (18%), Positives = 92/274 (33%), Gaps = 43/274 (15%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPD----GKVVALKKLHHSETEDSA-------------- 184
           E   +  CIG G +  V++            VA+K   +  ++                 
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 66

Query: 185 -------FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL 237
                    V +   ++ I E    G L            L+    +     ++ AL+YL
Sbjct: 67  HPHIVKLIGVITENPVWIIMELCTLGELRSF--LQVRKYSLDLASLILYAYQLSTALAYL 124

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ-AGTYGYIALELV 296
                   VHRDI++ N+L++SN    + DFG  R ++  +  +  +      ++A E +
Sbjct: 125 ES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESI 181

Query: 297 YTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK 355
                T    ++ FGV   E+LM G  P +              +I  +      P+   
Sbjct: 182 NFRRFTSASDVWMFGVCMWEILMHGVKPFQ--------GVKNNDVIGRIENGERLPMPPN 233

Query: 356 IIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
               +    ++   C    P  RP    +  +L 
Sbjct: 234 CPPTLY---SLMTKCWAYDPSRRPRFTELKAQLS 264

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  119 bits (298), Expect = 7e-31
 Identities = 57/290 (19%), Positives = 104/290 (35%), Gaps = 45/290 (15%)

Query: 123 VFSVWNYD----GKILYENLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHH 177
           VF +W        +I +++++D   ++ I   +GTG +  V++  E   G   A K +  
Sbjct: 5   VFDIWKQYYPQPVEIKHDHVLD---HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMT 61

Query: 178 SETEDSAF---------------------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAI 216
               D                               M  IYE+M  G LF  + D  E  
Sbjct: 62  PHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVAD--EHN 119

Query: 217 ELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS--NLEAFVADFGTVRLL 274
           +++    +  ++ V   L ++H +     VH D+   NI+  +  + E  + DFG    L
Sbjct: 120 KMSEDEAVEYMRQVCKGLCHMHENN---YVHLDLKPENIMFTTKRSNELKLIDFGLTAHL 176

Query: 275 DVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSS 334
           D   S +    GT  + A E+     V     ++S GV++  +L G  P         + 
Sbjct: 177 DPKQSVKVTT-GTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFG-----GEND 230

Query: 335 GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
              +  +      +       I +D           L + P +R T+ + 
Sbjct: 231 DETLRNVKSCDWNMDDSAFSGISEDGK---DFIRKLLLADPNTRMTIHQA 277

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  115 bits (290), Expect = 4e-30
 Identities = 59/303 (19%), Positives = 107/303 (35%), Gaps = 43/303 (14%)

Query: 135 YENLIDATEYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSAF-------- 185
           ++   D  + +  R  +GTG +  V  AE     K+VA+K +     E            
Sbjct: 1   WKQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAV 60

Query: 186 --------------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVA 231
                         +  S   ++ I + +  G LF  + +              ++  V 
Sbjct: 61  LHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGF---YTERDASRLIFQVL 117

Query: 232 HALSYLHHDCTPSIVHRDISSNNILL---NSNLEAFVADFGTVRLLDVDSSNRTLQAGTY 288
            A+ YLH      IVHRD+   N+L    + + +  ++DFG  ++ D  S   T   GT 
Sbjct: 118 DAVKYLHDLG---IVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTA-CGTP 173

Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRL 348
           GY+A E++     ++    +S GV+A  +L G  P         +       I       
Sbjct: 174 GYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFY-----DENDAKLFEQILKAEYEF 228

Query: 349 SPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE--LEGKTPMKKGLKEISIPEM 406
             P    I              +   P+ R T ++  Q   + G T + K + +    ++
Sbjct: 229 DSPYWDDISDSAK---DFIRHLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQSVSEQI 285

Query: 407 RNQ 409
           +  
Sbjct: 286 KKN 288

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  116 bits (291), Expect = 6e-30
 Identities = 47/266 (17%), Positives = 89/266 (33%), Gaps = 38/266 (14%)

Query: 143 EYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF---------------- 185
           +Y+ I   +G+G +  V++  E   G+V   K ++     D                   
Sbjct: 29  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKL 88

Query: 186 -----VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHD 240
                       M  I E++  G LF  +  +D   +++    +N ++     L ++H  
Sbjct: 89  INLHDAFEDKYEMVLILEFLSGGELFDRIAAED--YKMSEAEVINYMRQACEGLKHMHE- 145

Query: 241 CTPSIVHRDISSNNILLNSNLEAFV--ADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
              SIVH DI   NI+  +   + V   DFG    L+       +   T  + A E+V  
Sbjct: 146 --HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLN-PDEIVKVTTATAEFAAPEIVDR 202

Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ 358
             V     +++ GV+   +L G  P              +  +              +  
Sbjct: 203 EPVGFYTDMWAIGVLGYVLLSGLSPFA-----GEDDLETLQNVKRCDWEFDEDAFSSVSP 257

Query: 359 DIILVSTIALACLRSKPKSRPTMQRI 384
           +           L+ +P+ R T+   
Sbjct: 258 EAK---DFIKNLLQKEPRKRLTVHDA 280

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 9e-30
 Identities = 50/264 (18%), Positives = 95/264 (35%), Gaps = 44/264 (16%)

Query: 145 FHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSAF------------------ 185
           F +   +G G +  V+ AE     +  A+K L                            
Sbjct: 4   FILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHP 63

Query: 186 -------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLH 238
                     + + +FF+ EY+  G L   ++   +    + +R       +   L +LH
Sbjct: 64  FLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHK---FDLSRATFYAAEIILGLQFLH 120

Query: 239 HDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYT 298
                 IV+RD+  +NILL+ +    +ADFG  +   +  +      GT  YIA E++  
Sbjct: 121 S---KGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLG 177

Query: 299 MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ 358
                    +SFGV+  E+L+G  P             ++     +     P   +K  +
Sbjct: 178 QKYNHSVDWWSFGVLLYEMLIGQSP------FHGQDEEELFHSIRMDNPFYPRWLEKEAK 231

Query: 359 DIILVSTIALACLRSKPKSRPTMQ 382
           D++      +     +P+ R  ++
Sbjct: 232 DLL------VKLFVREPEKRLGVR 249

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  113 bits (284), Expect = 8e-29
 Identities = 49/272 (18%), Positives = 86/272 (31%), Gaps = 46/272 (16%)

Query: 145 FHIRYCIGTGGYDSVYKAELPD-GKVVALKKLHHSETEDSAF------------------ 185
           F +   IG GG+  VY     D GK+ A+K L     +                      
Sbjct: 6   FSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGD 65

Query: 186 ---------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSY 236
                      ++P  + FI + M  G L   L       E            +   L +
Sbjct: 66  CPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSE---ADMRFYAAEIILGLEH 122

Query: 237 LHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE-L 295
           +H+     +V+RD+   NILL+ +    ++D G     D          GT+GY+A E L
Sbjct: 123 MHN---RFVVYRDLKPANILLDEHGHVRISDLGLAC--DFSKKKPHASVGTHGYMAPEVL 177

Query: 296 VYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK 355
              +        +S G +  ++L G  P                 ID +   ++  +   
Sbjct: 178 QKGVAYDSSADWFSLGCMLFKLLRGHSP------FRQHKTKDKHEIDRMTLTMAVELPDS 231

Query: 356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE 387
              ++    ++    L+     R        +
Sbjct: 232 FSPELR---SLLEGLLQRDVNRRLGCLGRGAQ 260

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 7e-28
 Identities = 54/269 (20%), Positives = 97/269 (36%), Gaps = 38/269 (14%)

Query: 143 EYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLH-----------HSETEDSAFVV--- 187
           +Y      +G G    V +       +  ALK L            H        +V   
Sbjct: 12  DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIV 71

Query: 188 -------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHD 240
                     +C+  + E ++ G LF  ++D  +           I+KS+  A+ YLH  
Sbjct: 72  DVYENLYAGRKCLLIVMECLDGGELFSRIQDRGD-QAFTEREASEIMKSIGEAIQYLHS- 129

Query: 241 CTPSIVHRDISSNNILLNSNLE---AFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVY 297
              +I HRD+   N+L  S        + DFG  +     +S  T    T  Y+A E++ 
Sbjct: 130 --INIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPC-YTPYYVAPEVLG 186

Query: 298 TMVVTEKCVIYSFGVVALEVLMGTHP--GELLLSLSSSSGPKIMLIDILYQRLSPPINQK 355
                + C ++S GV+   +L G  P      L++S     +I +    +         +
Sbjct: 187 PEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSE 246

Query: 356 IIQDIILVSTIALACLRSKPKSRPTMQRI 384
            ++ +I         L+++P  R T+   
Sbjct: 247 EVKMLI------RNLLKTEPTQRMTITEF 269

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  108 bits (271), Expect = 1e-27
 Identities = 35/276 (12%), Positives = 81/276 (29%), Gaps = 41/276 (14%)

Query: 145 FHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSA------------------- 184
           + +   IG+G +  +Y    +  G+ VA+K                              
Sbjct: 9   YRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTI 68

Query: 185 -FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
            +          + E +             +    +    + +   +   + Y+H     
Sbjct: 69  RWCGAEGDYNVMVMELLGPSLEDLFNFCSRK---FSLKTVLLLADQMISRIEYIHS---K 122

Query: 244 SIVHRDISSNNILLNS---NLEAFVADFGTVRLLDVDSSN-------RTLQAGTYGYIAL 293
           + +HRD+  +N L+         ++ DFG  +      ++            GT  Y ++
Sbjct: 123 NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASI 182

Query: 294 ELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN 353
                +  + +  + S G V +   +    G L      ++  +     I  +++S PI 
Sbjct: 183 NTHLGIEQSRRDDLESLGYVLMYFNL----GSLPWQGLKAATKRQKYERISEKKMSTPIE 238

Query: 354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
                     +T    C   +   +P    + Q   
Sbjct: 239 VLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFR 274

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  107 bits (267), Expect = 3e-27
 Identities = 54/282 (19%), Positives = 105/282 (37%), Gaps = 49/282 (17%)

Query: 142 TEYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSAFVV------------- 187
           ++ + +   +G GG   V+ A  L   + VA+K L      D +F +             
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 188 ---------------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAH 232
                           +    + + EY++  +L  ++  +     +   R + ++     
Sbjct: 66  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP---MTPKRAIEVIADACQ 122

Query: 233 ALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ---AGTYG 289
           AL++ H      I+HRD+   NI++++     V DFG  R +    ++ T      GT  
Sbjct: 123 ALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQ 179

Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS 349
           Y++ E      V  +  +YS G V  EVL G  P       +  S   +    +    + 
Sbjct: 180 YLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPP------FTGDSPVSVAYQHVREDPIP 233

Query: 350 P-PINQKIIQDIILVSTIALACLRSKPKSRP-TMQRISQELE 389
           P   ++ +  D+     + L  L   P++R  T   +  +L 
Sbjct: 234 PSARHEGLSADLD---AVVLKALAKNPENRYQTAAEMRADLV 272

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  106 bits (266), Expect = 5e-27
 Identities = 50/280 (17%), Positives = 95/280 (33%), Gaps = 53/280 (18%)

Query: 143 EYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSA----------------- 184
           E +  +  +G G    V +    P  K  A+K +  +     +                 
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 62

Query: 185 --------------FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
                             +    F +++ M++G LF  L    E + L+      I++++
Sbjct: 63  LRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLT---EKVTLSEKETRKIMRAL 119

Query: 231 AHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGY 290
              +  LH      IVHRD+   NILL+ ++   + DFG    LD          GT  Y
Sbjct: 120 LEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQLD-PGEKLREVCGTPSY 175

Query: 291 IALELVYTMVV------TEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDIL 344
           +A E++   +        ++  ++S GV+   +L G+ P              + +I   
Sbjct: 176 LAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFW-----HRKQMLMLRMIMSG 230

Query: 345 YQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
             +   P        +     +    L  +P+ R T +  
Sbjct: 231 NYQFGSPEWDDYSDTVK---DLVSRFLVVQPQKRYTAEEA 267

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (263), Expect = 3e-26
 Identities = 57/269 (21%), Positives = 89/269 (33%), Gaps = 48/269 (17%)

Query: 145 FHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSAF------------------ 185
           F I   +GTG +  V+      +G+  A+K L                            
Sbjct: 6   FQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPF 65

Query: 186 ------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH 239
                      Q +F I +Y+E G LF +LR                V         L +
Sbjct: 66  IIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEV------CLALEY 119

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM 299
             +  I++RD+   NILL+ N    + DFG  + +           GT  YIA E+V T 
Sbjct: 120 LHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVP---DVTYTLCGTPDYIAPEVVSTK 176

Query: 300 VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS-PPINQKIIQ 358
              +    +SFG++  E+L G  P          S        IL   L  PP   + ++
Sbjct: 177 PYNKSIDWWSFGILIYEMLAGYTPFY-------DSNTMKTYEKILNAELRFPPFFNEDVK 229

Query: 359 DIILVSTIALACLRSKPKSRPTMQRISQE 387
           D++         +      R    +   E
Sbjct: 230 DLL------SRLITRDLSQRLGNLQNGTE 252

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  104 bits (259), Expect = 5e-26
 Identities = 34/278 (12%), Positives = 80/278 (28%), Gaps = 43/278 (15%)

Query: 145 FHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSA------------------- 184
           + +   IG G +  +++   L + + VA+K                              
Sbjct: 7   YKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNV 66

Query: 185 -FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
            +          + + +       +     +    +        K +   +  +H     
Sbjct: 67  YYFGQEGLHNVLVIDLLGPSLEDLLDLCGRK---FSVKTVAMAAKQMLARVQSIHE---K 120

Query: 244 SIVHRDISSNNILLNSNLE-----AFVADFGTVRLLDVDSSNRTLQ-------AGTYGYI 291
           S+V+RDI  +N L+           +V DFG V+      + + +        +GT  Y+
Sbjct: 121 SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYM 180

Query: 292 ALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP 351
           ++        + +  + + G V +  L G+ P         ++  K     I  ++ S P
Sbjct: 181 SINTHLGREQSRRDDLEALGHVFMYFLRGSLP----WQGLKAATNKQKYERIGEKKQSTP 236

Query: 352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE 389
           + +                      + P    +     
Sbjct: 237 LRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFS 274

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 4e-25
 Identities = 47/265 (17%), Positives = 82/265 (30%), Gaps = 45/265 (16%)

Query: 145 FHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSAFV----------------- 186
           F     +G G +  V        G+  A+K L          V                 
Sbjct: 7   FDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPF 66

Query: 187 -------VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH 239
                    +   + F+ EY   G LF  L  +         R       +  AL    +
Sbjct: 67  LTALKYAFQTHDRLCFVMEYANGGELFFHLSRERV---FTEERARFYGAEIVSAL---EY 120

Query: 240 DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM 299
             +  +V+RDI   N++L+ +    + DFG  +    D +      GT  Y+A E++   
Sbjct: 121 LHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDN 180

Query: 300 VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN-QKIIQ 358
                   +  GVV  E++ G  P         +   + +   IL + +  P       +
Sbjct: 181 DYGRAVDWWGLGVVMYEMMCGRLPFY-------NQDHERLFELILMEEIRFPRTLSPEAK 233

Query: 359 DIILVSTIALACLRSKPKSRPTMQR 383
            ++         L+  PK R     
Sbjct: 234 SLL------AGLLKKDPKQRLGGGP 252

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (251), Expect = 7e-25
 Identities = 50/274 (18%), Positives = 90/274 (32%), Gaps = 47/274 (17%)

Query: 143 EYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF---------------- 185
           +Y+     +G+G +  V K  E   G   A K +    T+ S                  
Sbjct: 10  DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE 69

Query: 186 -----------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHAL 234
                      V  +   +  I E +  G LF      D   E          + +   L
Sbjct: 70  IQHPNVITLHEVYENKTDVILILELVAGGELF------DFLAEKESLTEEEATEFLKQIL 123

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSN----LEAFVADFGTVRLLDVDSSNRTLQAGTYGY 290
           + +++  +  I H D+   NI+L           + DFG    +D   +      GT  +
Sbjct: 124 NGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID-FGNEFKNIFGTPEF 182

Query: 291 IALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP 350
           +A E+V    +  +  ++S GV+   +L G  P   L      +   +  ++  ++    
Sbjct: 183 VAPEIVNYEPLGLEADMWSIGVITYILLSGASP--FLGDTKQETLANVSAVNYEFEDEYF 240

Query: 351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
                + +D I         L   PK R T+Q  
Sbjct: 241 SNTSALAKDFI------RRLLVKDPKKRMTIQDS 268

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 99.2 bits (246), Expect = 4e-24
 Identities = 50/282 (17%), Positives = 97/282 (34%), Gaps = 45/282 (15%)

Query: 143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETEDSA------------------ 184
           E +H    IG G Y  VYKA+   G+  ALKK+   + ++                    
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN 61

Query: 185 ----FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHD 240
               + V   +    +        L  +L   +  +E    +       +   L+ + + 
Sbjct: 62  IVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSF-----LLQLLNGIAYC 116

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE-LVYTM 299
               ++HRD+   N+L+N   E  +ADFG  R   +     T +  T  Y A + L+ + 
Sbjct: 117 HDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSK 176

Query: 300 VVTEKCVIYSFGVVALEVLMGTHP-------------GELLLSLSSSSGPKIMLIDILYQ 346
             +    I+S G +  E++ GT                 +L + +S + P +  +     
Sbjct: 177 KYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDP 236

Query: 347 RLSPPINQKIIQDIILVSTIAL----ACLRSKPKSRPTMQRI 384
             +          +  +    +      L+  P  R T ++ 
Sbjct: 237 NFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQA 278

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.1 bits (241), Expect = 1e-23
 Identities = 58/273 (21%), Positives = 94/273 (34%), Gaps = 59/273 (21%)

Query: 145 FHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF------------------ 185
           + +   +G+GG+ SVY    + D   VA+K +      D                     
Sbjct: 6   YQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVS 65

Query: 186 -----------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHAL 234
                          P     I E  E          +  A  L      +    V  A+
Sbjct: 66  SGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGA--LQEELARSFFWQVLEAV 123

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSN-LEAFVADFGTVRLLDVDSSNRTLQAGTYGYIAL 293
            + H+     ++HRDI   NIL++ N  E  + DFG+  LL    +  T   GT  Y   
Sbjct: 124 RHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGSGALL--KDTVYTDFDGTRVYSPP 178

Query: 294 ELV-YTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILY-QRLSPP 351
           E + Y         ++S G++  +++ G  P E           +I+   + + QR+S  
Sbjct: 179 EWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFE--------HDEEIIRGQVFFRQRVSSE 230

Query: 352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRI 384
                 Q +I        CL  +P  RPT + I
Sbjct: 231 -----CQHLI------RWCLALRPSDRPTFEEI 252

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (242), Expect = 2e-23
 Identities = 53/278 (19%), Positives = 98/278 (35%), Gaps = 50/278 (17%)

Query: 151 IGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSA--------------------FVV-- 187
           +G G + +VYKA      ++VA+KK+      ++                      ++  
Sbjct: 6   LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGL 65

Query: 188 ----YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTP 243
                    +  ++++ME      +    D ++ L  +     +      L YLH     
Sbjct: 66  LDAFGHKSNISLVFDFMETDLEVII---KDNSLVLTPSHIKAYMLMTLQGLEYLHQHW-- 120

Query: 244 SIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTM-VVT 302
            I+HRD+  NN+LL+ N    +ADFG  +     +   T Q  T  Y A EL++   +  
Sbjct: 121 -ILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYG 179

Query: 303 EKCVIYSFGVVALEVLMGTHP-------------GELLLSLSSSSGPKIM-LIDILYQRL 348
               +++ G +  E+L+                  E L + +    P +  L D +  + 
Sbjct: 180 VGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKS 239

Query: 349 SPPINQKIIQDIILVSTIAL--ACLRSKPKSRPTMQRI 384
            P I    I        + L        P +R T  + 
Sbjct: 240 FPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQA 277

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.6 bits (242), Expect = 4e-23
 Identities = 49/263 (18%), Positives = 92/263 (34%), Gaps = 36/263 (13%)

Query: 151 IGTGGYDSVYKAELPD-GKVVALKKLHHSETE-----------DSAFVV----------- 187
           IG G +  VY+A+L D G++VA+KK+   +             D   +V           
Sbjct: 28  IGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGE 87

Query: 188 -YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIV 246
                 +  + +Y+                 L        +  +  +L+Y+H      I 
Sbjct: 88  KKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS---FGIC 144

Query: 247 HRDISSNNILLNSNLEAF-VADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKC 305
           HRDI   N+LL+ +     + DFG+ + L     N +     Y      +      T   
Sbjct: 145 HRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSI 204

Query: 306 VIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVST 365
            ++S G V  E+L+G                   L++I+ + L  P  ++I +     + 
Sbjct: 205 DVWSAGCVLAELLLGQPI-------FPGDSGVDQLVEII-KVLGTPTREQIREMNPNYTE 256

Query: 366 IALACLRSKPKSRPTMQRISQEL 388
                +++ P ++    R   E 
Sbjct: 257 FKFPQIKAHPWTKVFRPRTPPEA 279

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.5 bits (239), Expect = 5e-23
 Identities = 49/290 (16%), Positives = 86/290 (29%), Gaps = 50/290 (17%)

Query: 141 ATEYFHIRYCIGTGGYDSVYKAE--LPDGKVVALKKLHHSETEDS--------------- 183
           A + +     IG G Y  V+KA      G+ VALK++     E+                
Sbjct: 5   ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHL 64

Query: 184 -------------AFVVYSPQCMFFIYEYMERGSLFCV-LRDDDEAIELNWTRRMNIVKS 229
                           V        +    E          D      +      +++  
Sbjct: 65  ETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQ 124

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYG 289
           +   L +LH      +VHRD+   NIL+ S+ +  +ADFG  R+     +  +    T  
Sbjct: 125 LLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTS-VVVTLW 180

Query: 290 YIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP---------GELLLSLSSSSGPKIML 340
           Y A E++          ++S G +  E+                  +L +    G +   
Sbjct: 181 YRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWP 240

Query: 341 IDILYQRLSPPINQKIIQDIILVSTIALA------CLRSKPKSRPTMQRI 384
            D+   R +         +  +     L       CL   P  R +    
Sbjct: 241 RDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSA 290

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.3 bits (236), Expect = 1e-22
 Identities = 58/275 (21%), Positives = 91/275 (33%), Gaps = 53/275 (19%)

Query: 145 FHIRYCIGTGGYDSVYKAEL----PDGKVVALKKLHHSETEDSA---------------- 184
           F +   +GTG Y  V+          GK+ A+K L  +     A                
Sbjct: 26  FELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHI 85

Query: 185 ----FVV------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHAL 234
               F+V       +   +  I +Y+  G LF  L   +   E      +         +
Sbjct: 86  RQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYV------GEIV 139

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGT-VRLLDVDSSNRTLQAGTYGYIAL 293
             L H     I++RDI   NILL+SN    + DFG     +  ++       GT  Y+A 
Sbjct: 140 LALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAP 199

Query: 294 ELVYTMV--VTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP 351
           ++V        +    +S GV+  E+L G  P                 I     +  PP
Sbjct: 200 DIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFT-----VDGEKNSQAEISRRILKSEPP 254

Query: 352 INQKI---IQDIILVSTIALACLRSKPKSRPTMQR 383
             Q++    +D+I         L   PK R     
Sbjct: 255 YPQEMSALAKDLI------QRLLMKDPKKRLGCGP 283

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (234), Expect = 2e-22
 Identities = 47/282 (16%), Positives = 90/282 (31%), Gaps = 47/282 (16%)

Query: 145 FHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSAF------------------ 185
           F     IG G Y  VYKA     G+VVALKK+      +                     
Sbjct: 4   FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 63

Query: 186 -----VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHD 240
                V+++   ++ ++E++ +     +         +      + +  +   L++ H  
Sbjct: 64  VKLLDVIHTENKLYLVFEFLHQDLKKFMDASALT--GIPLPLIKSYLFQLLQGLAFCHSH 121

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVY-TM 299
               ++HRD+   N+L+N+     +ADFG  R   V     T +  T  Y A E++    
Sbjct: 122 R---VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK 178

Query: 300 VVTEKCVIYSFGVVALEVLMGTHP-------------GELLLSLSSSSGPKIMLIDILYQ 346
             +    I+S G +  E++                     L +      P +  +     
Sbjct: 179 YYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKP 238

Query: 347 RLSPPINQKIIQDIILVSTIAL----ACLRSKPKSRPTMQRI 384
                  Q   + +  +           L   P  R + +  
Sbjct: 239 SFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAA 280

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (234), Expect = 3e-22
 Identities = 53/298 (17%), Positives = 101/298 (33%), Gaps = 57/298 (19%)

Query: 137 NLIDATEYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSA----------- 184
            + D    +     IG G Y  V  A +  +   VA+KK+   E +              
Sbjct: 2   QVFDVGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILL 61

Query: 185 -----FVV----------YSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKS 229
                 ++                 ++  ++    L+ +L+       L+       +  
Sbjct: 62  RFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQ----HLSNDHICYFLYQ 117

Query: 230 VAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ---AG 286
           +   L Y+H     +++HRD+  +N+LLN+  +  + DFG  R+ D D  +         
Sbjct: 118 ILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVA 174

Query: 287 TYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHP-------------GELLLSLSS 332
           T  Y A E++      T+   I+S G +  E+L                    +L S S 
Sbjct: 175 TRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQ 234

Query: 333 SSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALA------CLRSKPKSRPTMQRI 384
                I+ +      LS P   K+  + +  +  + A       L   P  R  +++ 
Sbjct: 235 EDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQA 292

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (229), Expect = 7e-22
 Identities = 41/283 (14%), Positives = 98/283 (34%), Gaps = 49/283 (17%)

Query: 145 FHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSA------------------- 184
           +     IG G Y +V+KA+     ++VALK++   + ++                     
Sbjct: 4   YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNI 63

Query: 185 ----FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHD 240
                V++S + +  ++E+ ++         +             +   +   L  L   
Sbjct: 64  VRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCN------GDLDPEIVKSFLFQLLKGLGFC 117

Query: 241 CTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVY-TM 299
            + +++HRD+   N+L+N N E  +A+FG  R   +     + +  T  Y   ++++   
Sbjct: 118 HSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAK 177

Query: 300 VVTEKCVIYSFGVVALEVLMGTHP--------------GELLLSLSSSSGPKIMLIDILY 345
           + +    ++S G +  E+     P                LL + +    P +  +    
Sbjct: 178 LYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYK 237

Query: 346 QRLSPPINQKIIQDIILVSTIAL----ACLRSKPKSRPTMQRI 384
                P    ++  +  ++          L+  P  R + +  
Sbjct: 238 PYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEA 280

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.9 bits (227), Expect = 2e-21
 Identities = 46/304 (15%), Positives = 93/304 (30%), Gaps = 63/304 (20%)

Query: 138 LIDATEYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKK---------------------- 174
             D    +     IG G +  V+KA     G+ VALKK                      
Sbjct: 5   FCDEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQ 64

Query: 175 ---------LHHSETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMN 225
                    L       ++        ++ ++++ E      +         L       
Sbjct: 65  LLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSN------VLVKFTLSE 118

Query: 226 IVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS----NR 281
           I + +   L+ L++     I+HRD+ + N+L+  +    +ADFG  R   +  +      
Sbjct: 119 IKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRY 178

Query: 282 TLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHP-------------GELL 327
           T +  T  Y   EL+           ++  G +  E+   +                +L 
Sbjct: 179 TNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLC 238

Query: 328 LSLSSSSGPKIMLIDILYQRLSPPINQKIIQDII---LVSTIAL----ACLRSKPKSRPT 380
            S++    P +   ++  +       ++ ++D +   +    AL      L   P  R  
Sbjct: 239 GSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRID 298

Query: 381 MQRI 384
               
Sbjct: 299 SDDA 302

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.0 bits (212), Expect = 3e-19
 Identities = 41/269 (15%), Positives = 83/269 (30%), Gaps = 48/269 (17%)

Query: 143 EYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSAFV--------------- 186
           + F     +GTG +  V   +    G   A+K L   +      +               
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 187 ---------VYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL 237
                          ++ + EY+  G +F  LR        +          +     YL
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGR---FSEPHARFYAAQIVLTFEYL 157

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVY 297
           H      +++RD+   N+L++      V DFG                GT   +A E++ 
Sbjct: 158 HSLD---LIYRDLKPENLLIDQQGYIQVTDFG---FAKRVKGRTWTLCGTPEALAPEIIL 211

Query: 298 TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN-QKI 356
           +    +    ++ GV+  E+  G  P         +  P  +   I+  ++  P +    
Sbjct: 212 SKGYNKAVDWWALGVLIYEMAAGYPP-------FFADQPIQIYEKIVSGKVRFPSHFSSD 264

Query: 357 IQDIILVSTIALACLRSKPKSRPTMQRIS 385
           ++D++         L+     R    +  
Sbjct: 265 LKDLL------RNLLQVDLTKRFGNLKNG 287

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 84.5 bits (208), Expect = 7e-19
 Identities = 32/223 (14%), Positives = 73/223 (32%), Gaps = 37/223 (16%)

Query: 125 SVWNYDG-KILYENLIDATEYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETED 182
             W+Y+   + + N  D    + +   +G G Y  V++A  + + + V +K L   + + 
Sbjct: 20  EYWDYESHVVEWGNQDD----YQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKK 75

Query: 183 ---------------------SAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWT 221
                                        +    ++E++       + +       L   
Sbjct: 76  IKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ------TLTDY 129

Query: 222 RRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS-NLEAFVADFGTVRLLDVDSSN 280
                +  +  AL Y H      I+HRD+  +N++++  + +  + D+G           
Sbjct: 130 DIRFYMYEILKALDYCHSMG---IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEY 186

Query: 281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
               A  Y      LV   +      ++S G +   ++    P
Sbjct: 187 NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEP 229

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.1 bits (186), Expect = 7e-16
 Identities = 40/209 (19%), Positives = 71/209 (33%), Gaps = 40/209 (19%)

Query: 145 FHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSAF------------------ 185
           +     IG+G    V  A +    + VA+KKL       +                    
Sbjct: 19  YQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNI 78

Query: 186 -----------VVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHAL 234
                       +   Q ++ + E M+      +  + D        R   ++  +   +
Sbjct: 79  ISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHE------RMSYLLYQMLCGI 132

Query: 235 SYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALE 294
            +LH      I+HRD+  +NI++ S+    + DFG  R     S   T    T  Y A E
Sbjct: 133 KHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAG-TSFMMTPYVVTRYYRAPE 188

Query: 295 LVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
           ++  M   E   I+S G +  E++     
Sbjct: 189 VILGMGYKENVDIWSVGCIMGEMVRHKIL 217

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.4 bits (171), Expect = 5e-14
 Identities = 33/216 (15%), Positives = 64/216 (29%), Gaps = 39/216 (18%)

Query: 145 FHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSA------------------- 184
           + +   +G G + +V+ A+ + +   VA+K +   +    A                   
Sbjct: 15  YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKE 74

Query: 185 --------------FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSV 230
                         F    P  +  +  +   G     L    E   +       I K +
Sbjct: 75  DSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQL 134

Query: 231 AHALSYLHHDCTPSIVHRDISSNNILLNSN-LEAFVADFGTVRLLDVDSSNRTLQ--AGT 287
              L Y+H  C   I+H DI   N+L+        +       L +    +        T
Sbjct: 135 LLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQT 192

Query: 288 YGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP 323
             Y + E++          I+S   +  E++ G   
Sbjct: 193 REYRSPEVLLGAPWGCGADIWSTACLIFELITGDFL 228

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 1e-13
 Identities = 48/286 (16%), Positives = 86/286 (30%), Gaps = 49/286 (17%)

Query: 143 EYFHIRYCIGTGGYDSVYKA-ELPDGKVVALKKLHHSETEDSA----------------- 184
             +     +G+G Y +V  A +   G  VA+KKL+     +                   
Sbjct: 18  AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHE 77

Query: 185 -------FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYL 237
                            F   Y+    +   L    +  +L   R   +V  +   L Y+
Sbjct: 78  NVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYI 137

Query: 238 HHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVY 297
           H        HRD+   N+ +N + E  + DFG  R    DS         +      ++ 
Sbjct: 138 HAAGII---HRDLKPGNLAVNEDCELKILDFGLARQ--ADSEMTGYVVTRWYRAPEVILN 192

Query: 298 TMVVTEKCVIYSFGVVALEVLMGTHP-------------GELLLSLSSSSGPKIMLIDIL 344
            M  T+   I+S G +  E++ G                 ++  +  +    ++   +  
Sbjct: 193 WMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAK 252

Query: 345 YQRLSPPINQKIIQDIILVSTIALA------CLRSKPKSRPTMQRI 384
                 P  +K     IL +   LA       L    + R T    
Sbjct: 253 NYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEA 298

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (165), Expect = 3e-13
 Identities = 47/295 (15%), Positives = 82/295 (27%), Gaps = 49/295 (16%)

Query: 134 LYENLIDATEYFHIRYCIGTGGYDSVYKAE-LPDGKVVALKKLHHSETEDSA-------- 184
           L + + +  E +     +G+G Y SV  A     G  VA+KKL                 
Sbjct: 9   LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYREL 68

Query: 185 ----------------FVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVK 228
                               +     F   Y+    +   L +  +  +L       ++ 
Sbjct: 69  RLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIY 128

Query: 229 SVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQAGTY 288
            +   L Y+H        HRD+  +N+ +N + E  + DFG  R    D       A  +
Sbjct: 129 QILRGLKYIHSADII---HRDLKPSNLAVNEDCELKILDFGLAR--HTDDEMTGYVATRW 183

Query: 289 GYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP---------------GELLLSLSSS 333
                 ++  M   +   I+S G +  E+L G                            
Sbjct: 184 YRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELL 243

Query: 334 SGPKIMLIDILYQRLSPPINQKIIQDIILVSTIAL----ACLRSKPKSRPTMQRI 384
                       Q L+           I  + +A+      L      R T  + 
Sbjct: 244 KKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQA 298

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 62.9 bits (152), Expect = 3e-12
 Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 29/159 (18%)

Query: 151 IGTGGYDSVYKAELPDGKVVALKKLHHSETE-----------DSAFVVYSPQCMFFIYEY 199
           +G G   +V+           +K      T            D  F V + +     +  
Sbjct: 8   MGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRA 67

Query: 200 M--------------ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSI 245
           +              E  ++   L D  E   +       ++  +   ++  +H     I
Sbjct: 68  LQKLQGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRG---I 124

Query: 246 VHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRTLQ 284
           VH D+S  N+L+ S    ++ DF     +  +     L+
Sbjct: 125 VHGDLSQYNVLV-SEEGIWIIDFPQSVEVGEEGWREILE 162

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 15  SGVVEEEPSSPSFLKS-DMSFNNLDGEIPT--YLRDNPPKSFVGNKGLCG 61
            G + +  +   FL S ++SFNNL GEIP    L+     ++  NK LCG
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	412
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.87
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.78
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.84
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.19
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.05
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	96.84
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.5
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	96.47
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.28
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	95.96
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	95.85
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	95.59
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	95.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	95.38
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	94.76
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	94.72
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	94.39
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	93.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	93.01
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	92.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	92.26
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	92.17
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	91.79
d2ifga3	156	High affinity nerve growth factor receptor, N-term	91.65
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	91.08
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	90.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	90.75
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	90.54
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	89.25
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	88.82
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	88.17
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	88.12
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	87.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	86.56
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	85.84
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	82.15
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	80.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	80.29

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-51  Score=379.73  Aligned_cols=235  Identities=20%  Similarity=0.269  Sum_probs=184.3

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++|++.+.||+|+||+||+|++.+++.||||++                    +|+|+....+++..++..++||||+++
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~   84 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEH   84 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecCC
Confidence            578899999999999999999999999999965                    688999999999999999999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC-c
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN-R  281 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~-~  281 (412)
                      |+|.+++....  ..++|..++.++.|+|+||+|||++   +|+||||||+|||+++++.+||+|||+++........ .
T Consensus        85 g~L~~~l~~~~--~~~~~~~~~~i~~qia~gl~~lH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~  159 (263)
T d1sm2a_          85 GCLSDYLRTQR--GLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSS  159 (263)
T ss_dssp             CBHHHHHHTTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCTTCSGGGEEECGGGCEEECSCC-------------
T ss_pred             CcHHHHhhccc--cCCCHHHHHHHHHHHHHHHHhhhcc---ceeecccchhheeecCCCCeEecccchheeccCCCceee
Confidence            99999887653  2589999999999999999999998   9999999999999999999999999999876544322 2


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDII  361 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (412)
                      ....||+.|+|||++.+..++.++|||||||++|||+|+..|+..       ......+.+.+........+....   .
T Consensus       160 ~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~-------~~~~~~~~~~i~~~~~~~~p~~~~---~  229 (263)
T d1sm2a_         160 TGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE-------NRSNSEVVEDISTGFRLYKPRLAS---T  229 (263)
T ss_dssp             -----CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTC-------SCCHHHHHHHHHHTCCCCCCTTSC---H
T ss_pred             cceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCC-------CCCHHHHHHHHHhcCCCCCccccC---H
Confidence            345789999999999999999999999999999999996544331       111122233333333332222222   2


Q ss_pred             HHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          362 LVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       362 ~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      .+.+++.+||+.||++||||+||+++|+++.
T Consensus       230 ~l~~li~~cl~~~p~~Rps~~~il~~L~~i~  260 (263)
T d1sm2a_         230 HVYQIMNHCWKERPEDRPAFSRLLRQLAEIA  260 (263)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCHhHCcCHHHHHHHHHHHH
Confidence            4789999999999999999999999999864

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.4e-51  Score=383.90  Aligned_cols=246  Identities=27%  Similarity=0.390  Sum_probs=187.3

Q ss_pred             ccHHHHHHhhc---------CcccceeeeecCceEEEEEEeCC-C---cEEEEEe----------------------ccC
Q 042435          133 ILYENLIDATE---------YFHIRYCIGTGGYDSVYKAELPD-G---KVVALKK----------------------LHH  177 (412)
Q Consensus       133 ~~~~~l~~~~~---------~f~~~~~lG~G~~g~Vy~~~~~~-~---~~vAvK~----------------------l~~  177 (412)
                      ++|+++.+++.         +|++.++||+|+||+||+|.++. +   ..||||.                      ++|
T Consensus         7 ~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~H   86 (299)
T d1jpaa_           7 FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDH   86 (299)
T ss_dssp             GGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCC
Confidence            45555555544         45667899999999999998742 3   3689995                      368


Q ss_pred             CccccceEEEecCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe
Q 042435          178 SETEDSAFVVYSPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL  257 (412)
Q Consensus       178 ~~~~~~~~~~~~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl  257 (412)
                      +|+....+++..++..++|||||++|+|.+++.....  .++|.+++.++.||++||+|||++   +|+||||||+|||+
T Consensus        87 pnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~~--~l~~~~~~~i~~qia~gl~yLH~~---~iiHrDlKp~NILl  161 (299)
T d1jpaa_          87 PNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDG--QFTVIQLVGMLRGIAAGMKYLADM---NYVHRDLAARNILV  161 (299)
T ss_dssp             TTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTTTT--CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEE
T ss_pred             CCCccEEEEEeeCCEEEEEEEecCCCcceeeeccccC--CCCHHHHHHHHHHHHHHHHHHhhC---CCccCccccceEEE
Confidence            9999999999999999999999999999998876432  489999999999999999999998   99999999999999


Q ss_pred             cCCCcEEEeecCCccccCCCCCCc-----ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccc
Q 042435          258 NSNLEAFVADFGTVRLLDVDSSNR-----TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLS  331 (412)
Q Consensus       258 ~~~~~~kl~DfGla~~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~  331 (412)
                      +.++++||+|||+++.........     ....||+.|+|||.+.+..++.++|||||||++|||+| |+.||...    
T Consensus       162 ~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~----  237 (299)
T d1jpaa_         162 NSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDM----  237 (299)
T ss_dssp             CTTCCEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC----
T ss_pred             CCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCC----
Confidence            999999999999998765432211     22457899999999999999999999999999999998 89998732    


Q ss_pred             cCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          332 SSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                          ....+...+......+.+...   ...+.+++.+||+.||++||||.||++.|+++...
T Consensus       238 ----~~~~~~~~i~~~~~~~~~~~~---~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~~  293 (299)
T d1jpaa_         238 ----TNQDVINAIEQDYRLPPPMDC---PSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRN  293 (299)
T ss_dssp             ----CHHHHHHHHHTTCCCCCCTTC---CHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             ----CHHHHHHHHHcCCCCCCCccc---hHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcC
Confidence                111223333333333322222   23478899999999999999999999999987543

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-50  Score=376.51  Aligned_cols=235  Identities=23%  Similarity=0.337  Sum_probs=190.0

Q ss_pred             hcCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEecc
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      .++|++.+.||+|+||+||+|.+++++.||||++                    +|+|+.+..+++. .+..++||||++
T Consensus        12 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~-~~~~~iv~Ey~~   90 (272)
T d1qpca_          12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYME   90 (272)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECCT
T ss_pred             HHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeec-cCCeEEEEEeCC
Confidence            4578899999999999999999988899999965                    5788888877664 456799999999


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC-C
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS-N  280 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~-~  280 (412)
                      +|+|.+++..... ..++|..+++|+.||++||+|||++   +|+||||||+|||+++++.+||+|||+|+....... .
T Consensus        91 ~g~L~~~~~~~~~-~~l~~~~~~~i~~qi~~gl~~lH~~---~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~  166 (272)
T d1qpca_          91 NGSLVDFLKTPSG-IKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTA  166 (272)
T ss_dssp             TCBHHHHTTSHHH-HTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEEC
T ss_pred             CCcHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccchhheeeecccceeeccccceEEccCCcccc
Confidence            9999987765432 3599999999999999999999998   999999999999999999999999999997754332 2


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      .....||+.|+|||++.+..++.++|||||||++|||+||..|+...       .........+.....+..+....+  
T Consensus       167 ~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~-------~~~~~~~~~i~~~~~~~~p~~~~~--  237 (272)
T d1qpca_         167 REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPG-------MTNPEVIQNLERGYRMVRPDNCPE--  237 (272)
T ss_dssp             CTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTT-------CCHHHHHHHHHTTCCCCCCTTCCH--
T ss_pred             ccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCC-------CCHHHHHHHHHhcCCCCCcccChH--
Confidence            34457899999999999899999999999999999999976664411       111122233333333332232222  


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                       .+.+++.+||+.||++||||+||++.|++.
T Consensus       238 -~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~  267 (272)
T d1qpca_         238 -ELYQLMRLCWKERPEDRPTFDYLRSVLEDF  267 (272)
T ss_dssp             -HHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHcCCCHhHCcCHHHHHHHhhhh
Confidence             378899999999999999999999999864

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-50  Score=377.45  Aligned_cols=237  Identities=23%  Similarity=0.342  Sum_probs=184.0

Q ss_pred             hcCcccceeeeecCceEEEEEEeCCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .++|++.+.||+|+||+||+|++++  .||||++                       +|+|+.....++. .+..++|||
T Consensus         7 ~~~~~~~~~lG~G~fg~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~-~~~~~lv~E   83 (276)
T d1uwha_           7 DGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQLAIVTQ   83 (276)
T ss_dssp             TTCCCCCSEEEECSSCEEEEEESSS--EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred             cccEEEEEEEeeCCCcEEEEEEECC--EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEe-ccEEEEEEe
Confidence            4678899999999999999998753  5999965                       5788887776654 456899999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      ||++|+|.+++.....  .++|..++.++.||++||+|||++   +|+||||||+|||++.++.+||+|||+|+......
T Consensus        84 y~~~g~L~~~l~~~~~--~~~~~~~~~i~~qi~~gl~yLH~~---~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~  158 (276)
T d1uwha_          84 WCEGSSLYHHLHIIET--KFEMIKLIDIARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWS  158 (276)
T ss_dssp             CCCEEEHHHHHHTSCC--CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTSSEEECCCCCSCC-----
T ss_pred             cCCCCCHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHhcC---CEeccccCHHHEEEcCCCCEEEccccceeeccccC
Confidence            9999999999975432  589999999999999999999998   99999999999999999999999999998765432


Q ss_pred             C--CcccccccccccccccccC---cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCc-c
Q 042435          279 S--NRTLQAGTYGYIALELVYT---MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP-I  352 (412)
Q Consensus       279 ~--~~~~~~gt~~y~aPE~~~~---~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  352 (412)
                      .  ......||+.|||||++.+   ..++.++|||||||++|||+||+.||...       .....+...+......+ .
T Consensus       159 ~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~-------~~~~~~~~~~~~~~~~p~~  231 (276)
T d1uwha_         159 GSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNI-------NNRDQIIFMVGRGYLSPDL  231 (276)
T ss_dssp             -------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTC-------CCHHHHHHHHHHTSCCCCG
T ss_pred             CcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCC-------ChHHHHHHHHhcCCCCCcc
Confidence            2  2345679999999999864   35899999999999999999999999732       12222333333322221 1


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      ..........+.+++.+||+.||++||||+||+++|+.+..
T Consensus       232 ~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~  272 (276)
T d1uwha_         232 SKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLAR  272 (276)
T ss_dssp             GGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             hhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            11111222348899999999999999999999999987753

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-50  Score=372.81  Aligned_cols=231  Identities=23%  Similarity=0.265  Sum_probs=187.7

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------------cCCccccceEEEecCceEEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .++|++.+.||+|+||+||+|.. .+|+.||||++                      +|+|+......+.+++..|+|||
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmE   83 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   83 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEe
Confidence            46799999999999999999987 46999999954                      68888888888999999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      ||++|+|.+++....   .+++.++..++.|+++||+|||++   +|+||||||+|||+++++.+||+|||+|+......
T Consensus        84 y~~gg~L~~~l~~~~---~l~e~~~~~i~~qi~~al~ylH~~---~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~  157 (271)
T d1nvra_          84 YCSGGELFDRIEPDI---GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNN  157 (271)
T ss_dssp             CCTTEEGGGGSBTTT---BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred             ccCCCcHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHHHHc---CCccCcccHHHEEECCCCCEEEccchhheeeccCC
Confidence            999999999997654   599999999999999999999999   99999999999999999999999999998764432


Q ss_pred             --CCcccccccccccccccccCccc-CcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          279 --SNRTLQAGTYGYIALELVYTMVV-TEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       279 --~~~~~~~gt~~y~aPE~~~~~~~-s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                        .......||+.|+|||++.+..+ +.++|||||||++|||+||+.||...      ......................
T Consensus       158 ~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~------~~~~~~~~~~~~~~~~~~~~~~  231 (271)
T d1nvra_         158 RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP------SDSCQEYSDWKEKKTYLNPWKK  231 (271)
T ss_dssp             EECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSS------STTSHHHHHHHTTCTTSTTGGG
T ss_pred             ccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCC------ChHHHHHHHHhcCCCCCCcccc
Confidence              22345679999999999988776 57899999999999999999999632      1111112222222222111111


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .   ...+.+++.+||+.||++|||++|++++
T Consensus       232 ~---s~~~~~li~~~L~~dP~~R~t~~eil~h  260 (271)
T d1nvra_         232 I---DSAPLALLHKILVENPSARITIPDIKKD  260 (271)
T ss_dssp             S---CHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred             C---CHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence            1   2347789999999999999999999764

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.9e-51  Score=380.38  Aligned_cols=239  Identities=22%  Similarity=0.279  Sum_probs=198.3

Q ss_pred             hhcCcccceeeeecCceEEEEEEeC-CCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEe
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ..++|++.+.||+|+||+||+|.+. +|+.||||++                    +|+|+....+.+.+++..++||||
T Consensus        15 ~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~   94 (287)
T d1opja_          15 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF   94 (287)
T ss_dssp             CGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred             cHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeec
Confidence            3467899999999999999999875 5889999965                    688999999999999999999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      |++|+|.+++..... ..++|..++.++.|+++||+|||++   +|+||||||+|||+++++.+||+|||+++.......
T Consensus        95 ~~~g~l~~~l~~~~~-~~~~~~~~~~i~~qi~~gL~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~  170 (287)
T d1opja_          95 MTYGNLLDYLRECNR-QEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY  170 (287)
T ss_dssp             CTTCBHHHHHHHSCT-TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSS
T ss_pred             ccCcchHHHhhhccc-cchHHHHHHHHHHHHHHHHHHHHHC---CcccCccccCeEEECCCCcEEEccccceeecCCCCc
Confidence            999999999865432 2589999999999999999999998   999999999999999999999999999997654433


Q ss_pred             C-cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          280 N-RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       280 ~-~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                      . .....||+.|+|||++.+..++.++|||||||++|||++|..|+...       .....+.+.+.....++.+....+
T Consensus       171 ~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~  243 (287)
T d1opja_         171 TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPG-------IDLSQVYELLEKDYRMERPEGCPE  243 (287)
T ss_dssp             EEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTT-------CCHHHHHHHHHTTCCCCCCTTCCH
T ss_pred             eeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCc-------chHHHHHHHHhcCCCCCCCccchH
Confidence            2 23446889999999999999999999999999999999987776421       122223344444444443333333


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                         .+.+++.+||+.||++|||++||++.|+.+..
T Consensus       244 ---~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~~  275 (287)
T d1opja_         244 ---KVYELMRACWQWNPSDRPSFAEIHQAFETMFQ  275 (287)
T ss_dssp             ---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTS
T ss_pred             ---HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence               48899999999999999999999999998754

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-49  Score=367.54  Aligned_cols=233  Identities=24%  Similarity=0.298  Sum_probs=194.9

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++|++.+.||+|+||+||+|++++++.||||.+                    +|+|+.+..+++.+++..++||||+++
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~   83 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMAN   83 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCTT
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccCC
Confidence            689999999999999999999998999999964                    688999999999999999999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC-Cc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS-NR  281 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~-~~  281 (412)
                      |+|.+++.....  .+++..+.+++.|+++||+|||++   +|+||||||+||++++++.+||+|||+++....... ..
T Consensus        84 g~l~~~~~~~~~--~~~~~~~~~i~~qi~~gl~~LH~~---~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~  158 (258)
T d1k2pa_          84 GCLLNYLREMRH--RFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSS  158 (258)
T ss_dssp             EEHHHHHHSGGG--CCCHHHHHHHHHHHHHHHHHHHHT---TBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCC
T ss_pred             CcHHHhhhcccc--CCcHHHHHHHHHHHHHHHHHHhhc---CcccccccceeEEEcCCCcEEECcchhheeccCCCceee
Confidence            999988765543  589999999999999999999998   999999999999999999999999999987654432 23


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDI  360 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (412)
                      ....||+.|+|||.+.+..++.++|||||||++|||+| |+.||...       . ...+...+......+.+....   
T Consensus       159 ~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~-------~-~~~~~~~i~~~~~~~~p~~~~---  227 (258)
T d1k2pa_         159 VGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERF-------T-NSETAEHIAQGLRLYRPHLAS---  227 (258)
T ss_dssp             CCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTS-------C-HHHHHHHHHTTCCCCCCTTCC---
T ss_pred             cccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCC-------C-HHHHHHHHHhCCCCCCccccc---
Confidence            34578999999999999999999999999999999998 89998732       1 112222233333333223222   


Q ss_pred             HHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          361 ILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       361 ~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      ..+.+++.+||+.||++|||++|++++|.++
T Consensus       228 ~~l~~li~~cl~~dP~~RPt~~eil~~L~di  258 (258)
T d1k2pa_         228 EKVYTIMYSCWHEKADERPTFKILLSNILDV  258 (258)
T ss_dssp             HHHHHHHHHTTCSSGGGSCCHHHHHHHHHCC
T ss_pred             HHHHHHHHHHccCCHhHCcCHHHHHHHhhCC
Confidence            2488999999999999999999999999764

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-49  Score=367.84  Aligned_cols=225  Identities=26%  Similarity=0.363  Sum_probs=188.5

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||+||+|+.+ +|+.||+|.+                        +|+++.+...++.+++..++||
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence            57999999999999999999874 6899999953                        6889999999999999999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      |||++|+|.+++....   .+++..+..++.||++||+|||++   +|+||||||+|||++.++.+||+|||+|+.....
T Consensus        86 Ey~~~g~L~~~l~~~~---~l~e~~~~~i~~qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~  159 (263)
T d2j4za1          86 EYAPLGTVYRELQKLS---KFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS  159 (263)
T ss_dssp             ECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCC
T ss_pred             eecCCCcHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHHC---CeeeeeeccccceecCCCCEeecccceeeecCCC
Confidence            9999999999987543   589999999999999999999999   9999999999999999999999999999865433


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                        ......||+.|+|||++.+..++.++|||||||++|||+||+.||...       ........+.......  +....
T Consensus       160 --~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~-------~~~~~~~~i~~~~~~~--p~~~s  228 (263)
T d2j4za1         160 --RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN-------TYQETYKRISRVEFTF--PDFVT  228 (263)
T ss_dssp             --CCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS-------SHHHHHHHHHTTCCCC--CTTSC
T ss_pred             --cccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCC-------CHHHHHHHHHcCCCCC--CccCC
Confidence              234567999999999999999999999999999999999999999732       1111222222222221  12222


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                         ..+.+++.+||+.||++|||++|++++
T Consensus       229 ---~~~~~li~~~L~~dp~~R~t~~eil~h  255 (263)
T d2j4za1         229 ---EGARDLISRLLKHNPSQRPMLREVLEH  255 (263)
T ss_dssp             ---HHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred             ---HHHHHHHHHHccCCHhHCcCHHHHHcC
Confidence               237889999999999999999999864

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-49  Score=373.26  Aligned_cols=228  Identities=24%  Similarity=0.334  Sum_probs=190.6

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEec
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      ++|++.+.||+|+||+||+|.. .+|+.||||++                     +|+|+......+.+++..|+|||||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~   99 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEec
Confidence            4699999999999999999976 57999999964                     6888988888899999999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++|+|.+++...    .+++.++..++.|++.||+|||++   +|+||||||+|||++.++++||+|||+++........
T Consensus       100 ~gg~L~~~~~~~----~l~~~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~  172 (293)
T d1yhwa1         100 AGGSLTDVVTET----CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK  172 (293)
T ss_dssp             TTCBHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCC
T ss_pred             CCCcHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCcHHHeEECCCCcEeeccchhheeecccccc
Confidence            999999887653    489999999999999999999999   9999999999999999999999999999987665555


Q ss_pred             cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhcc-CCccchhhHHH
Q 042435          281 RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRL-SPPINQKIIQD  359 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (412)
                      .....||+.|+|||++.+..++.++|||||||++|||+||+.||...       .....+..+..... ..+.+...   
T Consensus       173 ~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~-------~~~~~~~~~~~~~~~~~~~~~~~---  242 (293)
T d1yhwa1         173 RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE-------NPLRALYLIATNGTPELQNPEKL---  242 (293)
T ss_dssp             BCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTS-------CHHHHHHHHHHHCSCCCSSGGGS---
T ss_pred             ccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCC-------CHHHHHHHHHhCCCCCCCCcccC---
Confidence            56678999999999999999999999999999999999999999632       11111222222211 11111222   


Q ss_pred             HHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          360 IILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       360 ~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...+.+++.+||+.||++|||++|++++
T Consensus       243 s~~~~~li~~~L~~dP~~R~s~~eil~H  270 (293)
T d1yhwa1         243 SAIFRDFLNRCLDMDVEKRGSAKELLQH  270 (293)
T ss_dssp             CHHHHHHHHHHTCSSTTTSCCHHHHTTC
T ss_pred             CHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            2347899999999999999999999874

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-49  Score=379.75  Aligned_cols=235  Identities=21%  Similarity=0.319  Sum_probs=193.6

Q ss_pred             hcCcccceeeeecCceEEEEEEeCC------CcEEEEEec-----------------------cCCccccceEEEecCce
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPD------GKVVALKKL-----------------------HHSETEDSAFVVYSPQC  192 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~------~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~  192 (412)
                      .++|++.++||+|+||+||+|++..      ...||+|.+                       +|+++......+.+.+.
T Consensus        36 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~  115 (325)
T d1rjba_          36 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGP  115 (325)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCe
Confidence            3679999999999999999997642      236899953                       58899999999999999


Q ss_pred             EEEEEEeccCCceeeeeccCcc--------------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCC
Q 042435          193 MFFIYEYMERGSLFCVLRDDDE--------------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISS  252 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~--------------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp  252 (412)
                      .++|||||++|+|.++++....                    ...++|..++.++.|+++||+|||++   +|+||||||
T Consensus       116 ~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~---~IiHRDlKp  192 (325)
T d1rjba_         116 IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLAA  192 (325)
T ss_dssp             CEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTCSG
T ss_pred             EEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCch
Confidence            9999999999999999875431                    13489999999999999999999998   999999999


Q ss_pred             CCEEecCCCcEEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccc
Q 042435          253 NNILLNSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLS  329 (412)
Q Consensus       253 ~NILl~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~  329 (412)
                      +|||++.++.+||+|||+|+........  .....||+.|||||++.+..++.++|||||||++|||+| |+.||...  
T Consensus       193 ~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~--  270 (325)
T d1rjba_         193 RNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI--  270 (325)
T ss_dssp             GGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC--
T ss_pred             hccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCC--
Confidence            9999999999999999999876554332  234568999999999999999999999999999999998 89998732  


Q ss_pred             cccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHh
Q 042435          330 LSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELE  389 (412)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~  389 (412)
                           .....+..++.....++.+....+   .+.+|+.+||+.||++|||++||+++|.
T Consensus       271 -----~~~~~~~~~~~~~~~~~~p~~~~~---~l~~li~~cl~~dP~~RPt~~ei~~~L~  322 (325)
T d1rjba_         271 -----PVDANFYKLIQNGFKMDQPFYATE---EIYIIMQSCWAFDSRKRPSFPNLTSFLG  322 (325)
T ss_dssp             -----CCSHHHHHHHHTTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             -----CHHHHHHHHHhcCCCCCCCCcCCH---HHHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence                 222334455555444433333323   3889999999999999999999999995

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-50  Score=373.82  Aligned_cols=234  Identities=25%  Similarity=0.353  Sum_probs=175.1

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEec--CceEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYS--PQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~--~~~~~lv  196 (412)
                      ++|++.+.||+|+||+||+|+. .+|+.||||.+                       +|+++.+....+.+  .+..|+|
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            6799999999999999999976 57999999964                       57888877776654  4568999


Q ss_pred             EEeccCCceeeeeccCc-ccccCCHHHHHHHHHHHHHHHHHHHhCC--CCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          197 YEYMERGSLFCVLRDDD-EAIELNWTRRMNIVKSVAHALSYLHHDC--TPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~-~~~~l~~~~~~~i~~~ia~gL~~LH~~~--~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ||||++|+|.+++.... ....+++..++.++.|++.||+|||+..  ..+|+||||||+|||++.++.+||+|||+++.
T Consensus        84 mEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~  163 (269)
T d2java1          84 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARI  163 (269)
T ss_dssp             EECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHH
T ss_pred             EecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceee
Confidence            99999999999986542 2235999999999999999999999862  12599999999999999999999999999998


Q ss_pred             cCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccc
Q 042435          274 LDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPIN  353 (412)
Q Consensus       274 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (412)
                      ............||+.|+|||++.+..++.++|||||||++|||+||+.||...       ........+...... +.+
T Consensus       164 ~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~-------~~~~~~~~i~~~~~~-~~~  235 (269)
T d2java1         164 LNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF-------SQKELAGKIREGKFR-RIP  235 (269)
T ss_dssp             C-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS-------SHHHHHHHHHHTCCC-CCC
T ss_pred             cccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCC-------CHHHHHHHHHcCCCC-CCC
Confidence            765544445678999999999999999999999999999999999999998732       111112222222222 222


Q ss_pred             hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          354 QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       354 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....   ..+.+++.+||+.||++|||++|++++
T Consensus       236 ~~~s---~~l~~li~~~L~~dp~~Rps~~ell~h  266 (269)
T d2java1         236 YRYS---DELNEIITRMLNLKDYHRPSVEEILEN  266 (269)
T ss_dssp             TTSC---HHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             cccC---HHHHHHHHHHcCCChhHCcCHHHHHhC
Confidence            2222   237889999999999999999999864

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-49  Score=372.38  Aligned_cols=238  Identities=26%  Similarity=0.344  Sum_probs=187.3

Q ss_pred             cCcccceeeeecCceEEEEEEeCCC-----cEEEEEec----------------------cCCccccceEEEecCceEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDG-----KVVALKKL----------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~-----~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      +.|+..++||+|+||+||+|.++++     ..||||++                      +|+|+....+++.+.+..++
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~   86 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI   86 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEE
Confidence            4688899999999999999987532     47999964                      68899999999999999999


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ||||+.+|++.+++....  ..++|.+++.++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++...
T Consensus        87 v~e~~~~~~l~~~~~~~~--~~~~~~~~~~i~~~i~~gl~~lH~~---~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~  161 (283)
T d1mqba_          87 ITEYMENGALDKFLREKD--GEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLE  161 (283)
T ss_dssp             EEECCTTEEHHHHHHHTT--TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC-----
T ss_pred             EEEecccCcchhhhhccc--ccccHHHHHHHHHHHHHhhhhcccc---ccccCccccceEEECCCCeEEEcccchhhccc
Confidence            999999999988776543  2599999999999999999999998   99999999999999999999999999998765


Q ss_pred             CCCC---CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          276 VDSS---NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       276 ~~~~---~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ....   ......||+.|+|||++.+..++.++|||||||++|||+||..|+...       .....+.+.+.....++.
T Consensus       162 ~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~-------~~~~~~~~~i~~~~~~~~  234 (283)
T d1mqba_         162 DDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWE-------LSNHEVMKAINDGFRLPT  234 (283)
T ss_dssp             ------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTT-------CCHHHHHHHHHTTCCCCC
T ss_pred             CCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCcccc-------CCHHHHHHHHhccCCCCC
Confidence            4322   123346899999999999999999999999999999999976665421       122223344444444443


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMK  395 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~  395 (412)
                      +....   ..+.+++.+||+.||++||||.||++.|+++.+.+
T Consensus       235 ~~~~~---~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~p  274 (283)
T d1mqba_         235 PMDCP---SAIYQLMMQCWQQERARRPKFADIVSILDKLIRAP  274 (283)
T ss_dssp             CTTCB---HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred             chhhH---HHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhCc
Confidence            33322   34889999999999999999999999998876543

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-49  Score=367.12  Aligned_cols=232  Identities=21%  Similarity=0.289  Sum_probs=187.4

Q ss_pred             cCccccee-eeecCceEEEEEEeC---CCcEEEEEec----------------------cCCccccceEEEecCceEEEE
Q 042435          143 EYFHIRYC-IGTGGYDSVYKAELP---DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~-lG~G~~g~Vy~~~~~---~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ++|.+.+. ||+|+||+||+|.++   ++..||||.+                      +|+|+....+++.+ +..++|
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~lv   86 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLV   86 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEE
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEEEE
Confidence            45667774 999999999999764   3558999964                      68888888887754 568999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      ||||++|+|.+++.....  .+++.++..++.|+++||+|||++   +|+||||||+|||++.++.+||+|||+++....
T Consensus        87 mE~~~~g~L~~~l~~~~~--~l~~~~~~~i~~qi~~gL~ylH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~  161 (285)
T d1u59a_          87 MEMAGGGPLHKFLVGKRE--EIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALGA  161 (285)
T ss_dssp             EECCTTEEHHHHHTTCTT--TSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECTT
T ss_pred             EEeCCCCcHHHHhhcccc--CCCHHHHHHHHHHHHHHHHHHHhC---CeecCcCchhheeeccCCceeeccchhhhcccc
Confidence            999999999998765432  589999999999999999999998   999999999999999999999999999987754


Q ss_pred             CCCC---cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          277 DSSN---RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       277 ~~~~---~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      ....   .....||+.|+|||++.+..++.++|||||||++|||+| |+.||...       . ...+...+.....++.
T Consensus       162 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~-------~-~~~~~~~i~~~~~~~~  233 (285)
T d1u59a_         162 DDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKM-------K-GPEVMAFIEQGKRMEC  233 (285)
T ss_dssp             CSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC-------C-THHHHHHHHTTCCCCC
T ss_pred             cccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCC-------C-HHHHHHHHHcCCCCCC
Confidence            3322   234568999999999999999999999999999999998 89998732       1 1122333333333333


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      +....   ..+.+++.+||+.||++||||.+|.+.|+..
T Consensus       234 p~~~~---~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~  269 (285)
T d1u59a_         234 PPECP---PELYALMSDCWIYKWEDRPDFLTVEQRMRAC  269 (285)
T ss_dssp             CTTCC---HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCcCC---HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence            33322   2478999999999999999999999998764

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-49  Score=370.33  Aligned_cols=230  Identities=23%  Similarity=0.310  Sum_probs=187.1

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEec
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      +.|++.+.||+|+||+||+|+. .+|+.||||++                     +|+|+.+...++.+++..++|||||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~   91 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC   91 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecC
Confidence            5689999999999999999987 46899999964                     6888888888999999999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++|+|.+++....  ..+++.++..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+|+........
T Consensus        92 ~~g~L~~~~~~~~--~~l~e~~~~~i~~qi~~gL~ylH~~---~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~  166 (288)
T d2jfla1          92 AGGAVDAVMLELE--RPLTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQR  166 (288)
T ss_dssp             TTEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHH
T ss_pred             CCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CEEEeecChhheeECCCCCEEEEechhhhccCCCccc
Confidence            9999999876432  2589999999999999999999999   9999999999999999999999999999765433222


Q ss_pred             ccccccccccccccccc-----CcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCC-ccch
Q 042435          281 RTLQAGTYGYIALELVY-----TMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSP-PINQ  354 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~-----~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  354 (412)
                      .....||+.|+|||++.     ...++.++|||||||++|||+||+.||...       .....+..+....... ..+.
T Consensus       167 ~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~-------~~~~~~~~i~~~~~~~~~~~~  239 (288)
T d2jfla1         167 RDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHEL-------NPMRVLLKIAKSEPPTLAQPS  239 (288)
T ss_dssp             HTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTS-------CGGGHHHHHHHSCCCCCSSGG
T ss_pred             ccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCC-------CHHHHHHHHHcCCCCCCCccc
Confidence            34567999999999984     456889999999999999999999999732       2222233333322111 1111


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                         .....+.+++.+||+.||++|||++|++++
T Consensus       240 ---~~s~~~~~li~~~L~~dp~~R~t~~ell~h  269 (288)
T d2jfla1         240 ---RWSSNFKDFLKKCLEKNVDARWTTSQLLQH  269 (288)
T ss_dssp             ---GSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             ---cCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence               222347899999999999999999999875

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-49  Score=370.50  Aligned_cols=237  Identities=21%  Similarity=0.272  Sum_probs=182.8

Q ss_pred             cCcccceeeeecCceEEEEEEeC------CCcEEEEEec-----------------------cCCccccceEEEec-Cce
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKL-----------------------HHSETEDSAFVVYS-PQC  192 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l-----------------------~~~~~~~~~~~~~~-~~~  192 (412)
                      ++|++.+.||+|+||.||+|.+.      +++.||||++                       +|+++......+.. ++.
T Consensus        13 ~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~   92 (299)
T d1ywna1          13 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP   92 (299)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSC
T ss_pred             HHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCe
Confidence            67999999999999999999763      3578999976                       34555555555554 456


Q ss_pred             EEEEEEeccCCceeeeeccCcc-------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC
Q 042435          193 MFFIYEYMERGSLFCVLRDDDE-------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS  259 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~  259 (412)
                      .++|||||++|+|.++++....             ...++|.+++.++.||++||+|||++   +|+||||||+|||+++
T Consensus        93 ~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~ivHrDlKp~NILl~~  169 (299)
T d1ywna1          93 LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSE  169 (299)
T ss_dssp             CEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECG
T ss_pred             EEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhC---CCcCCcCCccceeECC
Confidence            8999999999999999875431             22489999999999999999999999   9999999999999999


Q ss_pred             CCcEEEeecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCC-CCcccccccccCCCC
Q 042435          260 NLEAFVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGT-HPGELLLSLSSSSGP  336 (412)
Q Consensus       260 ~~~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~-~P~~~~~~~~~~~~~  336 (412)
                      ++.+||+|||+|+.......  ......||+.|+|||++.+..++.++|||||||++|||+||. .||...       ..
T Consensus       170 ~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~-------~~  242 (299)
T d1ywna1         170 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV-------KI  242 (299)
T ss_dssp             GGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC-------CC
T ss_pred             CCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCC-------CH
Confidence            99999999999987654332  234567999999999999999999999999999999999975 566521       22


Q ss_pred             cchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          337 KIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ...+...+.....++.+.....   .+.+++.+||+.||++|||++|++++|+++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~---~l~~li~~cl~~dP~~Rpt~~eil~~L~~il  295 (299)
T d1ywna1         243 DEEFCRRLKEGTRMRAPDYTTP---EMYQTMLDCWHGEPSQRPTFSELVEHLGNLL  295 (299)
T ss_dssp             SHHHHHHHHHTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCCccCCH---HHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence            2233444444444433333222   3789999999999999999999999998763

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-49  Score=365.52  Aligned_cols=225  Identities=21%  Similarity=0.267  Sum_probs=182.3

Q ss_pred             eeeeecCceEEEEEEeC---CCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          149 YCIGTGGYDSVYKAELP---DGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~---~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++||+|+||+||+|.++   .++.||||++                       +|+|+....+++.. +..++||||+++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcCCC
Confidence            57999999999999764   3568999964                       68888888887754 567899999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCc-
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNR-  281 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~-  281 (412)
                      |+|.++++...   .++|..++.++.||++||+|||++   +|+||||||+|||++.++.+||+|||+++......... 
T Consensus        92 g~L~~~l~~~~---~l~~~~~~~i~~qi~~gl~ylH~~---~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~  165 (277)
T d1xbba_          92 GPLNKYLQQNR---HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK  165 (277)
T ss_dssp             EEHHHHHHHCT---TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEE
T ss_pred             CcHHHHHhhcc---CCCHHHHHHHHHHHHHHHhhHHhC---CcccCCCcchhhcccccCcccccchhhhhhccccccccc
Confidence            99999987654   599999999999999999999998   99999999999999999999999999998765443222 


Q ss_pred             --ccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          282 --TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       282 --~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                        ....||+.|+|||.+.+..++.++|||||||++|||+| |+.||...        ....+...+.....++.+...+ 
T Consensus       166 ~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~--------~~~~~~~~i~~~~~~~~p~~~~-  236 (277)
T d1xbba_         166 AQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGM--------KGSEVTAMLEKGERMGCPAGCP-  236 (277)
T ss_dssp             C----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTC--------CHHHHHHHHHTTCCCCCCTTCC-
T ss_pred             cccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCC--------CHHHHHHHHHcCCCCCCCcccC-
Confidence              33568999999999999999999999999999999998 89998732        1122333333333333333322 


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                        ..+.+++.+||+.||++|||++||.+.|+..
T Consensus       237 --~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~  267 (277)
T d1xbba_         237 --REMYDLMNLCWTYDVENRPGFAAVELRLRNY  267 (277)
T ss_dssp             --HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHcCCCHhHCcCHHHHHHHhhCH
Confidence              3478999999999999999999999988753

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-48  Score=365.79  Aligned_cols=237  Identities=24%  Similarity=0.342  Sum_probs=187.6

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEeccC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEYMER  202 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey~~~  202 (412)
                      ++|++.+.||+|+||+||+|.+++++.||||++                    +|+++......+. .+..++||||+++
T Consensus        17 ~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv~Ey~~~   95 (285)
T d1fmka3          17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYMSK   95 (285)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEECCCTT
T ss_pred             HHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEEEEecCC
Confidence            579999999999999999999988889999965                    5788888887774 5568999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC-CCc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS-SNR  281 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~-~~~  281 (412)
                      |+|..++...... .++|.+++.++.||+.||+|||++   +|+||||||+|||+|.++++||+|||+++...... ...
T Consensus        96 g~l~~~~~~~~~~-~l~~~~~~~i~~~i~~gl~~LH~~---~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~  171 (285)
T d1fmka3          96 GSLLDFLKGETGK-YLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTAR  171 (285)
T ss_dssp             CBHHHHHSHHHHT-TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC----------
T ss_pred             Cchhhhhhhcccc-cchHHHHHHHHHHHHHHHHHHhhh---heecccccceEEEECCCCcEEEcccchhhhccCCCceee
Confidence            9999887754322 499999999999999999999998   99999999999999999999999999998764433 223


Q ss_pred             ccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHH
Q 042435          282 TLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDII  361 (412)
Q Consensus       282 ~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (412)
                      ....||+.|+|||++....++.++|||||||++|||+||..|+...       .....+...+......+.+....+   
T Consensus       172 ~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~-------~~~~~~~~~i~~~~~~~~~~~~~~---  241 (285)
T d1fmka3         172 QGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPG-------MVNREVLDQVERGYRMPCPPECPE---  241 (285)
T ss_dssp             ----CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTT-------CCHHHHHHHHHTTCCCCCCTTSCH---
T ss_pred             ccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCC-------CCHHHHHHHHHhcCCCCCCcccCH---
Confidence            4457899999999999999999999999999999999977775421       112223333333333333333323   


Q ss_pred             HHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          362 LVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       362 ~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                      .+.+++.+||+.||++||||++|++.|++.-..
T Consensus       242 ~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~  274 (285)
T d1fmka3         242 SLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS  274 (285)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcC
Confidence            488999999999999999999999999986543

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-48  Score=368.98  Aligned_cols=244  Identities=22%  Similarity=0.283  Sum_probs=194.8

Q ss_pred             HHHHHHhhcCcccceeeeecCceEEEEEEeC------CCcEEEEEec----------------------cCCccccceEE
Q 042435          135 YENLIDATEYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKL----------------------HHSETEDSAFV  186 (412)
Q Consensus       135 ~~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l----------------------~~~~~~~~~~~  186 (412)
                      +.+++...++|++.+.||+|+||+||+|+++      +++.||||++                      +|+++......
T Consensus         5 ~~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~   84 (301)
T d1lufa_           5 LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGV   84 (301)
T ss_dssp             HHHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             hhhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceee
Confidence            3445556788999999999999999999863      4678999975                      47888888888


Q ss_pred             EecCceEEEEEEeccCCceeeeeccCc---------------------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCc
Q 042435          187 VYSPQCMFFIYEYMERGSLFCVLRDDD---------------------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSI  245 (412)
Q Consensus       187 ~~~~~~~~lv~ey~~~gsL~~~l~~~~---------------------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~i  245 (412)
                      +...+..+++|||+++|+|.++++...                     ....++|..++.++.|++.||+|||++   +|
T Consensus        85 ~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~---~i  161 (301)
T d1lufa_          85 CAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KF  161 (301)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TC
T ss_pred             eccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccC---Ce
Confidence            999999999999999999999886422                     123489999999999999999999998   99


Q ss_pred             EEeCCCCCCEEecCCCcEEEeecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCC-C
Q 042435          246 VHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGT-H  322 (412)
Q Consensus       246 vHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~-~  322 (412)
                      +||||||+|||+|.++.+||+|||+++.......  ......||+.|+|||.+.+..++.++|||||||++|||++|. .
T Consensus       162 vHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~  241 (301)
T d1lufa_         162 VHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQ  241 (301)
T ss_dssp             CCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             EeeEEcccceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCC
Confidence            9999999999999999999999999986543322  223457889999999999999999999999999999999986 4


Q ss_pred             CcccccccccCCCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          323 PGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       323 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ||...       ... .+...+.....++.+.....   .+.+|+.+||+.||++||||.||++.|+++.
T Consensus       242 p~~~~-------~~~-e~~~~v~~~~~~~~p~~~~~---~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~  300 (301)
T d1lufa_         242 PYYGM-------AHE-EVIYYVRDGNILACPENCPL---ELYNLMRLCWSKLPADRPSFCSIHRILQRMC  300 (301)
T ss_dssp             TTTTS-------CHH-HHHHHHHTTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             CCCCC-------CHH-HHHHHHHcCCCCCCCccchH---HHHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence            66521       111 22222322222322222222   4789999999999999999999999999875

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-48  Score=365.23  Aligned_cols=227  Identities=22%  Similarity=0.328  Sum_probs=185.7

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||+||+|.. .+|+.||||.+                        +|+++......+.+++..|+||
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            5799999999999999999987 57999999954                        6888988888899999999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      |||++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||+++++.+||+|||+|+.+...
T Consensus        88 Ey~~gg~L~~~~~~~~---~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~  161 (288)
T d1uu3a_          88 SYAKNGELLKYIRKIG---SFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE  161 (288)
T ss_dssp             CCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECC--
T ss_pred             EccCCCCHHHhhhccC---CCCHHHHHHHHHHHHHHHHhhccc---cEEcCcCCccccccCCCceEEecccccceecccC
Confidence            9999999999877544   589999999999999999999999   9999999999999999999999999999977543


Q ss_pred             CC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          278 SS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       278 ~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ..  ......||+.|+|||++.+..++.++|||||||++|||+||+.||...       ........+.......  +..
T Consensus       162 ~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~-------~~~~~~~~i~~~~~~~--p~~  232 (288)
T d1uu3a_         162 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG-------NEYLIFQKIIKLEYDF--PEK  232 (288)
T ss_dssp             --------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHTTCCCC--CTT
T ss_pred             CcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCc-------CHHHHHHHHHcCCCCC--Ccc
Confidence            22  234457999999999999999999999999999999999999999732       1111222233222221  122


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .   ...+.+++.+||+.||++|||++|++++
T Consensus       233 ~---s~~~~~li~~~L~~dP~~R~t~~e~~~~  261 (288)
T d1uu3a_         233 F---FPKARDLVEKLLVLDATKRLGCEEMEGY  261 (288)
T ss_dssp             C---CHHHHHHHHTTSCSSGGGSTTSGGGTCH
T ss_pred             C---CHHHHHHHHHHccCCHhHCcCHHHHcCC
Confidence            2   2237899999999999999999997543

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-48  Score=357.39  Aligned_cols=227  Identities=22%  Similarity=0.301  Sum_probs=177.6

Q ss_pred             cccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEec----CceEEEE
Q 042435          145 FHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVYS----PQCMFFI  196 (412)
Q Consensus       145 f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~~----~~~~~lv  196 (412)
                      |+..++||+|+||+||+|... +++.||+|++                       +|+|+.+....+.+    ....++|
T Consensus        11 ~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~iv   90 (270)
T d1t4ha_          11 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV   90 (270)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEE
Confidence            356678999999999999874 6889999954                       67888887776543    4568999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec-CCCcEEEeecCCccccC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN-SNLEAFVADFGTVRLLD  275 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~-~~~~~kl~DfGla~~~~  275 (412)
                      |||+++|+|.+++....   .+++..+..++.||++||+|||++ .++|+||||||+|||++ +++.+||+|||+++...
T Consensus        91 mE~~~~g~L~~~l~~~~---~~~~~~~~~~~~qi~~gl~yLH~~-~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~  166 (270)
T d1t4ha_          91 TELMTSGTLKTYLKRFK---VMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR  166 (270)
T ss_dssp             EECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCC
T ss_pred             EeCCCCCcHHHHHhccc---cccHHHHHHHHHHHHHHHHHHHHC-CCCEEeCCcChhhceeeCCCCCEEEeecCcceecc
Confidence            99999999999987543   589999999999999999999998 22399999999999996 57899999999998643


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ..  ......||+.|+|||++.+ .++.++|||||||++|||+||+.||...       .....+...+.....+...  
T Consensus       167 ~~--~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~-------~~~~~~~~~i~~~~~~~~~--  234 (270)
T d1t4ha_         167 AS--FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC-------QNAAQIYRRVTSGVKPASF--  234 (270)
T ss_dssp             TT--SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC-------SSHHHHHHHHTTTCCCGGG--
T ss_pred             CC--ccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCc-------ccHHHHHHHHHcCCCCccc--
Confidence            32  2345689999999998865 5999999999999999999999998622       1111222222222222111  


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .......+.+++.+||+.||++|||++|++++
T Consensus       235 ~~~~~~~~~~li~~~l~~dp~~R~s~~ell~H  266 (270)
T d1t4ha_         235 DKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH  266 (270)
T ss_dssp             GGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             CccCCHHHHHHHHHHccCCHhHCcCHHHHhCC
Confidence            11112347899999999999999999999874

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.6e-48  Score=368.56  Aligned_cols=231  Identities=23%  Similarity=0.289  Sum_probs=177.4

Q ss_pred             hcCcccceeeeecCceEEEEEEeC-CCcEEEEEec----------------------cCCccccceEEEecCceEEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .+.|++.+.||+|+||+||+|... +|+.||||.+                      +|+++.....++.+++..|+|||
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE   87 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQ   87 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            466999999999999999999874 6899999964                      67888888888999999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec---CCCcEEEeecCCccccC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN---SNLEAFVADFGTVRLLD  275 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~---~~~~~kl~DfGla~~~~  275 (412)
                      ||++|+|.+++....   .+++.....++.|++.||+|||++   +|+||||||+|||+.   +++.+||+|||+++...
T Consensus        88 ~~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~  161 (307)
T d1a06a_          88 LVSGGELFDRIVEKG---FYTERDASRLIFQVLDAVKYLHDL---GIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMED  161 (307)
T ss_dssp             CCCSCBHHHHHHTCS---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCC-------
T ss_pred             ccCCCcHHHhhhccc---CCCHHHHHHHHHHHHHHHHhhhhc---eeeeEEecccceeecccCCCceEEEeccceeEEcc
Confidence            999999999997654   599999999999999999999999   999999999999994   57899999999998664


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ... ......||+.|+|||++.+..++.++|||||||++|||+||+.||...       ........+.......+. ..
T Consensus       162 ~~~-~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~-------~~~~~~~~i~~~~~~~~~-~~  232 (307)
T d1a06a_         162 PGS-VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE-------NDAKLFEQILKAEYEFDS-PY  232 (307)
T ss_dssp             ------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS-------SHHHHHHHHHTTCCCCCT-TT
T ss_pred             CCC-eeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCC-------CHHHHHHHHhccCCCCCC-cc
Confidence            432 233457999999999999999999999999999999999999999732       111122222222222111 11


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .......+.+++.+||+.||++|||++|++++
T Consensus       233 ~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  264 (307)
T d1a06a_         233 WDDISDSAKDFIRHLMEKDPEKRFTCEQALQH  264 (307)
T ss_dssp             TTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred             ccCCCHHHHHHHHHHccCCHhHCcCHHHHhcC
Confidence            11122347899999999999999999999986

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.1e-48  Score=366.68  Aligned_cols=225  Identities=21%  Similarity=0.299  Sum_probs=183.6

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      +.|+..+.||+|+||+||+|.. .+|+.||||++                        +|+|+.....++.+++..++||
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~   94 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEE
Confidence            4589999999999999999976 57899999964                        5888988888999999999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      |||++|+|..++....   .+++.++..++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+++.....
T Consensus        95 E~~~~g~l~~~~~~~~---~l~e~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~  168 (309)
T d1u5ra_          95 EYCLGSASDLLEVHKK---PLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA  168 (309)
T ss_dssp             ECCSEEHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB
T ss_pred             EecCCCchHHHHHhCC---CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEECCCCCEEEeecccccccCCC
Confidence            9999999876655433   599999999999999999999999   9999999999999999999999999999865432


Q ss_pred             CCCcccccccccccccccccC---cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          278 SSNRTLQAGTYGYIALELVYT---MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~---~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                          ....||+.|+|||++.+   ..|+.++|||||||++|||++|+.||...       .....+..+...........
T Consensus       169 ----~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~-------~~~~~~~~i~~~~~~~~~~~  237 (309)
T d1u5ra_         169 ----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM-------NAMSALYHIAQNESPALQSG  237 (309)
T ss_dssp             ----CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-------CHHHHHHHHHHSCCCCCSCT
T ss_pred             ----CccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCC-------CHHHHHHHHHhCCCCCCCCC
Confidence                34579999999999864   46899999999999999999999998632       11112223333222222112


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..   ...+.+++.+||+.||++|||++|++++
T Consensus       238 ~~---s~~~~~li~~~L~~dP~~Rpt~~ell~H  267 (309)
T d1u5ra_         238 HW---SEYFRNFVDSCLQKIPQDRPTSEVLLKH  267 (309)
T ss_dssp             TS---CHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred             CC---CHHHHHHHHHHCcCChhHCcCHHHHHhC
Confidence            12   2247899999999999999999999874

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-48  Score=370.66  Aligned_cols=236  Identities=23%  Similarity=0.293  Sum_probs=185.1

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------------cCCccccceEEEecCceEEEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      .++|++.+.||+|+||+||+|.. .+|+.||+|++                      +|+|+.+...++.+++..++|||
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmE   84 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   84 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            57899999999999999999986 57899999964                      58888888899999999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHh-CCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH-DCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~-~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||++|+|.+++....   .+++..+..++.|++.||+|||+ +   +|+||||||+|||++.++.+||+|||+|+.....
T Consensus        85 y~~gg~L~~~l~~~~---~l~~~~~~~~~~qil~aL~yLH~~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~  158 (322)
T d1s9ja_          85 HMDGGSLDQVLKKAG---RIPEQILGKVSIAVIKGLTYLREKH---KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  158 (322)
T ss_dssp             CCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHHH---CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH
T ss_pred             cCCCCcHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHHHHhC---CEEccccCHHHeeECCCCCEEEeeCCCccccCCC
Confidence            999999999987543   58999999999999999999997 5   8999999999999999999999999999865432


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccc------c---C---------------
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS------S---S---------------  333 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~------~---~---------------  333 (412)
                      .  .....||+.|+|||++.+..++.++||||+||++|||++|+.||.......      .   .               
T Consensus       159 ~--~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (322)
T d1s9ja_         159 M--ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRP  236 (322)
T ss_dssp             T--C---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC---------------------
T ss_pred             c--cccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCccccccccc
Confidence            2  234589999999999999999999999999999999999999996321000      0   0               


Q ss_pred             -------CCCcchhhHH---hhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          334 -------SGPKIMLIDI---LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       334 -------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                             ..+.....+.   ......+..+..  .....+.+++.+||..||++|||++|+++|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~dli~~~L~~dP~~R~ta~e~L~H  298 (322)
T d1s9ja_         237 LSSYGMDSRPPMAIFELLDYIVNEPPPKLPSG--VFSLEFQDFVNKCLIKNPAERADLKQLMVH  298 (322)
T ss_dssp             ---------CCCCHHHHHHHHHTSCCCCCCBT--TBCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             ccccccccccchhHHHHHhhhhccCCccCccc--cCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence                   0000000000   001111111000  012347889999999999999999999885

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-47  Score=356.98  Aligned_cols=231  Identities=22%  Similarity=0.270  Sum_probs=188.3

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------------cCCccccceEEEecCceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------------HHSETEDSAFVVYSPQCM  193 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------------~~~~~~~~~~~~~~~~~~  193 (412)
                      .+.|++.+.||+|+||+||+|.. .+|+.||||.+                           +|+|+.+...++.+.+..
T Consensus         9 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~   88 (293)
T d1jksa_           9 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV   88 (293)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence            36799999999999999999987 57999999954                           578888888889999999


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC----cEEEeecC
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL----EAFVADFG  269 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~----~~kl~DfG  269 (412)
                      ++|||||++|+|.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++    .+|++|||
T Consensus        89 ~iv~E~~~gg~L~~~i~~~~---~l~~~~~~~~~~qi~~al~yLH~~---~ivHrDiKp~Nill~~~~~~~~~vkl~DfG  162 (293)
T d1jksa_          89 ILILELVAGGELFDFLAEKE---SLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFG  162 (293)
T ss_dssp             EEEEECCCSCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSSSSCCEEECCCT
T ss_pred             EEEEEcCCCccccchhcccc---ccchhHHHHHHHHHHHHHHhhhhc---ceeecccccceEEEecCCCcccceEecchh
Confidence            99999999999999987543   599999999999999999999999   999999999999998766    59999999


Q ss_pred             CccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          270 TVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       270 la~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      +++...... ......||+.|+|||++.+..++.++|||||||++|||+||+.||...       ........+......
T Consensus       163 ~a~~~~~~~-~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~-------~~~~~~~~i~~~~~~  234 (293)
T d1jksa_         163 LAHKIDFGN-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-------TKQETLANVSAVNYE  234 (293)
T ss_dssp             TCEECTTSC-BCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHTTCCC
T ss_pred             hhhhcCCCc-cccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCC-------CHHHHHHHHHhcCCC
Confidence            998765432 233457899999999999999999999999999999999999998732       111112222222222


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .+ ..........+.+++.+||+.||++|||++|++++
T Consensus       235 ~~-~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  271 (293)
T d1jksa_         235 FE-DEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH  271 (293)
T ss_dssp             CC-HHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CC-chhcCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            11 11111223347899999999999999999999875

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=3.8e-47  Score=365.20  Aligned_cols=232  Identities=21%  Similarity=0.255  Sum_probs=189.9

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEe
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      .++|++.+.||+|+||.||+|.. .+|+.||||++                     +|+++.....++.+.+..++||||
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~  104 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  104 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            35899999999999999999986 57999999964                     688999999999999999999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec--CCCcEEEeecCCccccCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN--SNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~--~~~~~kl~DfGla~~~~~~  277 (412)
                      |++|+|.+++.....  .+++..+..++.||+.||+|||++   +|+||||||+|||++  .++.+||+|||+++.+...
T Consensus       105 ~~gg~L~~~l~~~~~--~l~e~~~~~i~~qi~~aL~ylH~~---~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~  179 (350)
T d1koaa2         105 MSGGELFEKVADEHN--KMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK  179 (350)
T ss_dssp             CCSCBHHHHHTCTTS--CBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTT
T ss_pred             CCCCCHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHhc---CCeeeeechhHeeeccCCCCeEEEeecchheecccc
Confidence            999999998865432  489999999999999999999999   999999999999995  4678999999999876543


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                      . ......||+.|+|||++.+..++.++|||||||++|||+||+.||...       .....+..+.......+. ....
T Consensus       180 ~-~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~-------~~~~~~~~i~~~~~~~~~-~~~~  250 (350)
T d1koaa2         180 Q-SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE-------NDDETLRNVKSCDWNMDD-SAFS  250 (350)
T ss_dssp             S-CEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHTCCCSCC-GGGG
T ss_pred             c-ccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCC-------CHHHHHHHHHhCCCCCCc-cccc
Confidence            3 234568999999999999999999999999999999999999998632       111222333332222211 1111


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .....+.+++.+||+.||++|||++|++++
T Consensus       251 ~~s~~~~~li~~~L~~dP~~R~t~~eil~h  280 (350)
T d1koaa2         251 GISEDGKDFIRKLLLADPNTRMTIHQALEH  280 (350)
T ss_dssp             GCCHHHHHHHHHHCCSSGGGSCCHHHHHHS
T ss_pred             CCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            122347899999999999999999999986

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-47  Score=353.64  Aligned_cols=231  Identities=22%  Similarity=0.324  Sum_probs=182.5

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec-------------------cCCccccceEEEec-CceEEEEEEeccC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-------------------HHSETEDSAFVVYS-PQCMFFIYEYMER  202 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-------------------~~~~~~~~~~~~~~-~~~~~lv~ey~~~  202 (412)
                      ++|++.+.||+|+||.||+|++ .|+.||||++                   +|+|+....+.+.+ .+..++||||+++
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~   85 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAK   85 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCTT
T ss_pred             HHeEEeEEEecCCCeEEEEEEE-CCeEEEEEEECcHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccCC
Confidence            5688899999999999999998 5788999965                   58888888887755 4568999999999


Q ss_pred             CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCCcc
Q 042435          203 GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSNRT  282 (412)
Q Consensus       203 gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~~~  282 (412)
                      |+|.+++..... ..++|..+++++.||+.||+|||+.   +|+||||||+|||++.++.+|++|||+++.....   ..
T Consensus        86 g~L~~~l~~~~~-~~l~~~~~~~i~~~i~~al~ylH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~---~~  158 (262)
T d1byga_          86 GSLVDYLRSRGR-SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST---QD  158 (262)
T ss_dssp             EEHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC------------
T ss_pred             CCHHHHHHhcCC-CCCCHHHHHHHHHHHHhhccccccC---ceeccccchHhheecCCCCEeecccccceecCCC---Cc
Confidence            999999975432 2589999999999999999999998   9999999999999999999999999999865432   23


Q ss_pred             cccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccchhhHHHHH
Q 042435          283 LQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQDII  361 (412)
Q Consensus       283 ~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (412)
                      ...+|..|+|||++.+..++.++|||||||++|||+| |+.||...        ....+...+.....++.+....   .
T Consensus       159 ~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~--------~~~~~~~~i~~~~~~~~~~~~~---~  227 (262)
T d1byga_         159 TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI--------PLKDVVPRVEKGYKMDAPDGCP---P  227 (262)
T ss_dssp             ---CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS--------CGGGHHHHHTTTCCCCCCTTCC---H
T ss_pred             cccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCC--------CHHHHHHHHHcCCCCCCCccCC---H
Confidence            3467899999999999999999999999999999998 67776521        1222333333333333333322   2


Q ss_pred             HHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          362 LVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       362 ~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      .+.+++.+||+.||++||||.|++++|++++
T Consensus       228 ~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~  258 (262)
T d1byga_         228 AVYEVMKNCWHLDAAMRPSFLQLREQLEHIK  258 (262)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccCHhHCcCHHHHHHHHHHHH
Confidence            4789999999999999999999999998764

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-47  Score=360.25  Aligned_cols=228  Identities=22%  Similarity=0.305  Sum_probs=191.0

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      .++|++.+.||+|+||.||+|+. .+|+.||||++                        +|+++......+.+.+..|+|
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv   83 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccc
Confidence            35799999999999999999976 57999999964                        588888889999999999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      ||||++|+|.+++....   .++......++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+|+....
T Consensus        84 ~ey~~gg~L~~~~~~~~---~~~e~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~  157 (337)
T d1o6la_          84 MEYANGGELFFHLSRER---VFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS  157 (337)
T ss_dssp             EECCTTCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred             eeccCCCchhhhhhccc---CCcHHHHHHHHHHHhhhhhhhhhc---CccccccCHHHeEecCCCCEEEeeccccccccc
Confidence            99999999999887654   588899999999999999999999   999999999999999999999999999997655


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      ........+||+.|+|||++.+..++.++||||+||++|||++|+.||...       ........+.......+  ...
T Consensus       158 ~~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~-------~~~~~~~~i~~~~~~~p--~~~  228 (337)
T d1o6la_         158 DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-------DHERLFELILMEEIRFP--RTL  228 (337)
T ss_dssp             TTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHCCCCCC--TTS
T ss_pred             CCcccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCc-------CHHHHHHHHhcCCCCCC--ccC
Confidence            555556678999999999999999999999999999999999999998732       11112222222222221  222


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCC-----HHHHHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPT-----MQRISQE  387 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  387 (412)
                      .   ..+.+++.+||+.||++||+     ++|+++|
T Consensus       229 s---~~~~dli~~~L~~dP~~R~~~~~~~~~eil~H  261 (337)
T d1o6la_         229 S---PEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             C---HHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             C---HHHHHHHHhhccCCchhhcccccccHHHHHcC
Confidence            2   23788999999999999994     8888875

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-47  Score=358.36  Aligned_cols=246  Identities=24%  Similarity=0.336  Sum_probs=188.3

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec--------------------cCCccccceEEEecCc----eEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL--------------------HHSETEDSAFVVYSPQ----CMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~----~~~lv~e  198 (412)
                      .+|.+.+.||+|+||.||+|++ +|+.||||++                    +|+|+.....++...+    .+++|||
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~E   81 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD   81 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEe
Confidence            4577889999999999999997 6899999964                    5788888888776543    6899999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhC-----CCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHD-----CTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~-----~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ||++|+|.++++..    .++|.++++++.|+|.||+|+|+.     ..++|+||||||+|||++.++.+||+|||+++.
T Consensus        82 y~~~g~L~~~l~~~----~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~  157 (303)
T d1vjya_          82 YHEHGSLFDYLNRY----TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR  157 (303)
T ss_dssp             CCTTCBHHHHHHHC----CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             cccCCCHHHHHhcC----CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCcccc
Confidence            99999999999764    499999999999999999999974     135999999999999999999999999999987


Q ss_pred             cCCCCC----CcccccccccccccccccCc------ccCcccccHHHHHHHHHHHhCCCCccccccccc-------CCCC
Q 042435          274 LDVDSS----NRTLQAGTYGYIALELVYTM------VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS-------SSGP  336 (412)
Q Consensus       274 ~~~~~~----~~~~~~gt~~y~aPE~~~~~------~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~-------~~~~  336 (412)
                      ......    ......||+.|+|||++.+.      .++.++|||||||++|||+||..|+........       ....
T Consensus       158 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~  237 (303)
T d1vjya_         158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS  237 (303)
T ss_dssp             EETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred             ccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccch
Confidence            654332    22346799999999998754      367899999999999999999988753221110       0000


Q ss_pred             cchhh-HHhhhccCCccchh--hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          337 KIMLI-DILYQRLSPPINQK--IIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       337 ~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      ..... ........++.+..  ..+....+.+++.+||+.||++|||+.||+++|+++..
T Consensus       238 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~  297 (303)
T d1vjya_         238 VEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ  297 (303)
T ss_dssp             HHHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHH
Confidence            01111 12222333322221  22334458899999999999999999999999987753

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-47  Score=360.33  Aligned_cols=239  Identities=26%  Similarity=0.359  Sum_probs=190.8

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCc--EEEEEec-----------------------cCCccccceEEEecCceEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGK--VVALKKL-----------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~--~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ++|++.++||+|+||+||+|.+. +|.  .||||++                       +|+|+....+.+.+++..++|
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV   89 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   89 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence            67889999999999999999875 344  5778853                       588999999999999999999


Q ss_pred             EEeccCCceeeeeccCc-------------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcE
Q 042435          197 YEYMERGSLFCVLRDDD-------------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEA  263 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~  263 (412)
                      |||+++|+|.++++...             ....++|.+++.++.||++||.|||++   +|+||||||+|||++.++.+
T Consensus        90 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~---~iiHrDlkp~NIL~~~~~~~  166 (309)
T d1fvra_          90 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVA  166 (309)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCE
T ss_pred             EEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcC---CccccccccceEEEcCCCce
Confidence            99999999999997542             224699999999999999999999999   99999999999999999999


Q ss_pred             EEeecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCC-CcccccccccCCCCcchhhH
Q 042435          264 FVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTH-PGELLLSLSSSSGPKIMLID  342 (412)
Q Consensus       264 kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~-P~~~~~~~~~~~~~~~~~~~  342 (412)
                      ||+|||+++....... .....||..|+|||.+.+..++.++|||||||++|||++|.. ||...        ....+.+
T Consensus       167 kl~DfG~a~~~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~--------~~~~~~~  237 (309)
T d1fvra_         167 KIADFGLSRGQEVYVK-KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM--------TCAELYE  237 (309)
T ss_dssp             EECCTTCEESSCEECC-C----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC--------CHHHHHH
T ss_pred             EEcccccccccccccc-ccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCC--------CHHHHHH
Confidence            9999999986543322 234468999999999999999999999999999999999765 55421        1122233


Q ss_pred             HhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCCCC
Q 042435          343 ILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPMKK  396 (412)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~  396 (412)
                      .+.....++.+....+   .+.+++.+||+.||++||||+||+++|+++....+
T Consensus       238 ~i~~~~~~~~~~~~~~---~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~~~  288 (309)
T d1fvra_         238 KLPQGYRLEKPLNCDD---EVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK  288 (309)
T ss_dssp             HGGGTCCCCCCTTBCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred             HHHhcCCCCCCccCCH---HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCc
Confidence            3333333333333222   48899999999999999999999999988765443

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-47  Score=354.72  Aligned_cols=233  Identities=22%  Similarity=0.316  Sum_probs=178.0

Q ss_pred             cCcccceeeeecCceEEEEEEeCC----CcEEEEEec----------------------cCCccccceEEEecCceEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPD----GKVVALKKL----------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~----~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ++|++.+.||+|+||.||+|.+..    +..||||.+                      +|+|+....+.+. .+..++|
T Consensus         7 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~iv   85 (273)
T d1mp8a_           7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWII   85 (273)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEE
T ss_pred             HHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEEEE
Confidence            579999999999999999997743    457899954                      6888888888775 5678999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      |||+++|+|.+++....  ..+++..++.++.|+++||+|||++   +|+||||||+||+++.++.+||+|||+++....
T Consensus        86 ~E~~~~g~l~~~~~~~~--~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~  160 (273)
T d1mp8a_          86 MELCTLGELRSFLQVRK--YSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED  160 (273)
T ss_dssp             EECCTTEEHHHHHHHTT--TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC---------
T ss_pred             EEeccCCcHHhhhhccC--CCCCHHHHHHHHHHHHHHhhhhccc---CeeccccchhheeecCCCcEEEccchhheeccC
Confidence            99999999998876543  2589999999999999999999999   999999999999999999999999999987654


Q ss_pred             CCC-CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCccch
Q 042435          277 DSS-NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQ  354 (412)
Q Consensus       277 ~~~-~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (412)
                      ... ......||+.|+|||++.+..++.++|||||||++|||+| |..||...       .... +...+......+.+.
T Consensus       161 ~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~-------~~~~-~~~~i~~~~~~~~~~  232 (273)
T d1mp8a_         161 STYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGV-------KNND-VIGRIENGERLPMPP  232 (273)
T ss_dssp             ----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTC-------CGGG-HHHHHHTTCCCCCCT
T ss_pred             CcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCC-------CHHH-HHHHHHcCCCCCCCC
Confidence            332 2344568999999999999999999999999999999998 88898732       1112 222222222222223


Q ss_pred             hhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          355 KIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       355 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      ...   ..+.+++.+||+.||++|||+.||+++|+.+.
T Consensus       233 ~~~---~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~  267 (273)
T d1mp8a_         233 NCP---PTLYSLMTKCWAYDPSRRPRFTELKAQLSTIL  267 (273)
T ss_dssp             TCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCC---HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            322   34889999999999999999999999998764

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=9.1e-47  Score=362.80  Aligned_cols=232  Identities=21%  Similarity=0.264  Sum_probs=189.3

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec---------------------cCCccccceEEEecCceEEEEEEe
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL---------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l---------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      .++|++.+.||+|+||.||+|.. .+|+.||||.+                     +|+++.....++.+++..|+||||
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~  107 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF  107 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            35799999999999999999976 57999999964                     688999999999999999999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec--CCCcEEEeecCCccccCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN--SNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~--~~~~~kl~DfGla~~~~~~  277 (412)
                      |++|+|.+++....  ..+++.++..++.||+.||+|||++   +|+||||||+|||++  .++.+||+|||+|+.....
T Consensus       108 ~~gg~L~~~~~~~~--~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~  182 (352)
T d1koba_         108 LSGGELFDRIAAED--YKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD  182 (352)
T ss_dssp             CCCCBHHHHTTCTT--CCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTT
T ss_pred             CCCChHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccccccccccccCCCeEEEeecccceecCCC
Confidence            99999988776543  2489999999999999999999999   999999999999997  6789999999999877544


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                      . ......||+.|+|||++.+..++.++||||+||++|||+||+.||...       .....+..+.......+. ....
T Consensus       183 ~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~-------~~~~~~~~i~~~~~~~~~-~~~~  253 (352)
T d1koba_         183 E-IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE-------DDLETLQNVKRCDWEFDE-DAFS  253 (352)
T ss_dssp             S-CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS-------SHHHHHHHHHHCCCCCCS-STTT
T ss_pred             C-ceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCC-------CHHHHHHHHHhCCCCCCc-cccc
Confidence            3 234457999999999999999999999999999999999999999732       111122222222222111 1111


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .....+.+++.+||+.||.+|||+.|++++
T Consensus       254 ~~s~~~~~li~~~L~~dp~~R~s~~eil~H  283 (352)
T d1koba_         254 SVSPEAKDFIKNLLQKEPRKRLTVHDALEH  283 (352)
T ss_dssp             TSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred             CCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            122347899999999999999999999886

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-47  Score=357.59  Aligned_cols=237  Identities=22%  Similarity=0.311  Sum_probs=189.6

Q ss_pred             hcCcccceeeeecCceEEEEEEeCC--------CcEEEEEec-----------------------cCCccccceEEEecC
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELPD--------GKVVALKKL-----------------------HHSETEDSAFVVYSP  190 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~~--------~~~vAvK~l-----------------------~~~~~~~~~~~~~~~  190 (412)
                      .++|++.+.||+|+||.||+|+...        +..||||++                       +|+++.....++.++
T Consensus        12 ~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~   91 (299)
T d1fgka_          12 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   91 (299)
T ss_dssp             GGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccC
Confidence            3578899999999999999997532        357999965                       588999999999999


Q ss_pred             ceEEEEEEeccCCceeeeeccCcc-------------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDE-------------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL  257 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl  257 (412)
                      +..++||||+++|+|.+++.....             ...+++.+++.++.|++.||+|||++   +|+||||||+|||+
T Consensus        92 ~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~---~ivHrDiKp~NiLl  168 (299)
T d1fgka_          92 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLV  168 (299)
T ss_dssp             SSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred             CeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhC---CEEeeeecccceee
Confidence            999999999999999999975431             23589999999999999999999999   99999999999999


Q ss_pred             cCCCcEEEeecCCccccCCCCC--CcccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCC
Q 042435          258 NSNLEAFVADFGTVRLLDVDSS--NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSS  334 (412)
Q Consensus       258 ~~~~~~kl~DfGla~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~  334 (412)
                      +.++.+||+|||+++.......  ......||+.|+|||.+.+..++.++|||||||++|||+| |..||...       
T Consensus       169 ~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~-------  241 (299)
T d1fgka_         169 TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV-------  241 (299)
T ss_dssp             CTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC-------
T ss_pred             cCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCC-------
Confidence            9999999999999987654332  2244578999999999999999999999999999999998 68887622       


Q ss_pred             CCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          335 GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                       ....+.+.+.....++.+....+   .+.+++.+||+.||++|||+.||++.|+++.
T Consensus       242 -~~~~~~~~i~~~~~~~~p~~~~~---~l~~li~~cl~~dP~~Rps~~eil~~L~~i~  295 (299)
T d1fgka_         242 -PVEELFKLLKEGHRMDKPSNCTN---ELYMMMRDCWHAVPSQRPTFKQLVEDLDRIV  295 (299)
T ss_dssp             -CHHHHHHHHHTTCCCCCCSSCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHcCCCCCCCccchH---HHHHHHHHHccCCHhHCcCHHHHHHHHHHHh
Confidence             11223344444443333333223   3889999999999999999999999998764

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-47  Score=359.62  Aligned_cols=226  Identities=23%  Similarity=0.357  Sum_probs=189.5

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec-------------------------cCCccccceEEEecCceEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-------------------------HHSETEDSAFVVYSPQCMFFI  196 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-------------------------~~~~~~~~~~~~~~~~~~~lv  196 (412)
                      ++|++.+.||+|+||+||+|.. .+|+.||||++                         +|+++......+.+++..|+|
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            6799999999999999999977 47999999964                         578888888899999999999


Q ss_pred             EEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCC
Q 042435          197 YEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDV  276 (412)
Q Consensus       197 ~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~  276 (412)
                      ||||++|+|.+++....   .++...+..++.||+.||+|||++   +|+||||||+|||+++++.+||+|||+++....
T Consensus        82 mEy~~~g~L~~~i~~~~---~~~e~~~~~~~~qi~~al~ylH~~---~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~  155 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCH---KFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENML  155 (320)
T ss_dssp             EECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred             EeecCCCcHHHHhhccC---CCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCcccceeecCCCceeccccchhhhccc
Confidence            99999999999997544   588999999999999999999999   999999999999999999999999999987765


Q ss_pred             CCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          277 DSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       277 ~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                      .........||+.|+|||++.+..++.++|||||||++|||+||+.||...       ........+.....  ..+...
T Consensus       156 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~-------~~~~~~~~i~~~~~--~~p~~~  226 (320)
T d1xjda_         156 GDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ-------DEEELFHSIRMDNP--FYPRWL  226 (320)
T ss_dssp             TTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHCCC--CCCTTS
T ss_pred             ccccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCC-------CHHHHHHHHHcCCC--CCCccC
Confidence            555556678999999999999999999999999999999999999999732       11112222222222  112222


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHH-HHHH
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQ-RISQ  386 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~-evl~  386 (412)
                      .   ..+.+++.+||+.||++|||+. |+++
T Consensus       227 s---~~~~dli~~~L~~dP~~R~s~~~~l~~  254 (320)
T d1xjda_         227 E---KEAKDLLVKLFVREPEKRLGVRGDIRQ  254 (320)
T ss_dssp             C---HHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             C---HHHHHHHHHhcccCCCCCcCHHHHHHh
Confidence            2   2378999999999999999995 6754

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-46  Score=364.21  Aligned_cols=226  Identities=20%  Similarity=0.283  Sum_probs=185.1

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec---------------------------cCCccccceEEEecCceEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL---------------------------HHSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l---------------------------~~~~~~~~~~~~~~~~~~~  194 (412)
                      ++|++.++||+|+||.||+|+.. +|+.||||.+                           +|+++.....++.+.+..|
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~   83 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS   83 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEE
Confidence            68999999999999999999874 6999999964                           4788888888899999999


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      +|||||++|+|.+++....   .+++..+..++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+|+..
T Consensus        84 ivmE~~~gg~L~~~l~~~~---~~~e~~~~~~~~qi~~aL~ylH~~---~iiHrDlKP~NILl~~~g~iKl~DFGla~~~  157 (364)
T d1omwa3          84 FILDLMNGGDLHYHLSQHG---VFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDF  157 (364)
T ss_dssp             EEECCCCSCBHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSSSCEEECCCTTCEEC
T ss_pred             EEEEecCCCcHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHC---CccceeeccceeEEcCCCcEEEeeeceeeec
Confidence            9999999999999987543   588999999999999999999999   9999999999999999999999999999876


Q ss_pred             CCCCCCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccC--Cc
Q 042435          275 DVDSSNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS--PP  351 (412)
Q Consensus       275 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  351 (412)
                      ....  .....||+.|+|||++.. ..++.++|||||||++|||+||+.||....       . .....+......  ..
T Consensus       158 ~~~~--~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~-------~-~~~~~~~~~~~~~~~~  227 (364)
T d1omwa3         158 SKKK--PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHK-------T-KDKHEIDRMTLTMAVE  227 (364)
T ss_dssp             SSSC--CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSC-------S-SCHHHHHHHSSSCCCC
T ss_pred             CCCc--ccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCC-------H-HHHHHHHHhcccCCCC
Confidence            5432  334579999999999874 568999999999999999999999997321       1 111122222111  11


Q ss_pred             cchhhHHHHHHHHHHHHhcCcCCCCCCCC-----HHHHHHH
Q 042435          352 INQKIIQDIILVSTIALACLRSKPKSRPT-----MQRISQE  387 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~evl~~  387 (412)
                      .+...   ...+.+++.+||+.||++|||     ++|+++|
T Consensus       228 ~~~~~---s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~H  265 (364)
T d1omwa3         228 LPDSF---SPELRSLLEGLLQRDVNRRLGCLGRGAQEVKES  265 (364)
T ss_dssp             CCSSS---CHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHTS
T ss_pred             CCCCC---CHHHHHHHHHHcccCHHHhCCCcccCHHHHHcC
Confidence            11222   223789999999999999999     6888764

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-47  Score=358.68  Aligned_cols=233  Identities=23%  Similarity=0.375  Sum_probs=185.6

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCc----EEEEEec----------------------cCCccccceEEEecCceEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGK----VVALKKL----------------------HHSETEDSAFVVYSPQCMFF  195 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~----~vAvK~l----------------------~~~~~~~~~~~~~~~~~~~l  195 (412)
                      ++|++.++||+|+||+||+|.+. +|+    .||+|++                      +|+|+....+++.++ ..++
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~~   87 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   87 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeeE
Confidence            46999999999999999999774 444    6899854                      688888888888764 5678


Q ss_pred             EEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccC
Q 042435          196 IYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLD  275 (412)
Q Consensus       196 v~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~  275 (412)
                      ++||+.+|+|.+++....  ..+++..+++++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+++...
T Consensus        88 v~e~~~~~~l~~~~~~~~--~~~~~~~~~~i~~qi~~gl~yLH~~---~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~  162 (317)
T d1xkka_          88 ITQLMPFGCLLDYVREHK--DNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLLG  162 (317)
T ss_dssp             EEECCTTCBHHHHHHHTS--SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCCSHHHHTT
T ss_pred             EEEeccCCcccccccccc--cCCCHHHHHHHHHHHHHHHHHHHHc---CcccCcchhhcceeCCCCCeEeeccccceecc
Confidence            899999999988776543  2589999999999999999999998   99999999999999999999999999998765


Q ss_pred             CCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCCcc
Q 042435          276 VDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSPPI  352 (412)
Q Consensus       276 ~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (412)
                      .....  .....||+.|+|||++.+..++.++|||||||++|||+| |+.||+..        ....+...+.....++.
T Consensus       163 ~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~--------~~~~~~~~i~~~~~~~~  234 (317)
T d1xkka_         163 AEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI--------PASEISSILEKGERLPQ  234 (317)
T ss_dssp             TTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTS--------CGGGHHHHHHHTCCCCC
T ss_pred             cccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCC--------CHHHHHHHHHcCCCCCC
Confidence            44332  234468999999999999999999999999999999999 78888632        12223444444443333


Q ss_pred             chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          353 NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       353 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      +....   ..+.+++.+||+.||++|||+.|++++|+.+.
T Consensus       235 p~~~~---~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~  271 (317)
T d1xkka_         235 PPICT---IDVYMIMVKCWMIDADSRPKFRELIIEFSKMA  271 (317)
T ss_dssp             CTTBC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CcccC---HHHHHHHHHhCCCChhhCcCHHHHHHHHHHHH
Confidence            33322   24789999999999999999999999987653

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-47  Score=353.76  Aligned_cols=233  Identities=24%  Similarity=0.305  Sum_probs=181.3

Q ss_pred             cCcccceeeeecCceEEEEEEeC--CC--cEEEEEec------------------------cCCccccceEEEecCceEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP--DG--KVVALKKL------------------------HHSETEDSAFVVYSPQCMF  194 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~--~~--~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~  194 (412)
                      ++|++.+.||+|+||+||+|++.  ++  ..||||++                        +|+|+....+++.+ +..+
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~~   86 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPMK   86 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cchh
Confidence            56899999999999999999763  22  37899954                        68888888888865 5678


Q ss_pred             EEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcccc
Q 042435          195 FIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLL  274 (412)
Q Consensus       195 lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~  274 (412)
                      +||||+++|++.+++....  ..+++..++.++.|++.||+|||++   +|+||||||+||+++.++++||+|||+++..
T Consensus        87 lv~e~~~~~~l~~~~~~~~--~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDikp~NIll~~~~~vkl~DfGl~~~~  161 (273)
T d1u46a_          87 MVTELAPLGSLLDRLRKHQ--GHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRAL  161 (273)
T ss_dssp             EEEECCTTCBHHHHHHHHG--GGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEEC
T ss_pred             eeeeeecCcchhhhhhccc--CCCCHHHHHHHHHHHHHHHHHhhhC---CEeeeeecHHHhccccccceeeccchhhhhc
Confidence            9999999999998776543  2599999999999999999999998   9999999999999999999999999999976


Q ss_pred             CCCCCC---cccccccccccccccccCcccCcccccHHHHHHHHHHHh-CCCCcccccccccCCCCcchhhHHhhhccCC
Q 042435          275 DVDSSN---RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLM-GTHPGELLLSLSSSSGPKIMLIDILYQRLSP  350 (412)
Q Consensus       275 ~~~~~~---~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~ellt-g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (412)
                      ......   .....|+..|+|||++.+..++.++|||||||++|||+| |+.||...       ........+......+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~-------~~~~~~~~i~~~~~~~  234 (273)
T d1u46a_         162 PQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL-------NGSQILHKIDKEGERL  234 (273)
T ss_dssp             CC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC-------CHHHHHHHHHTSCCCC
T ss_pred             ccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCc-------CHHHHHHHHHhCCCCC
Confidence            544332   233467889999999999999999999999999999998 89998732       1112223333333333


Q ss_pred             ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          351 PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       351 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      +.+.....   .+.+++.+||+.||++||||.||.+.|++.
T Consensus       235 ~~~~~~~~---~l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         235 PRPEDCPQ---DIYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             CCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CCcccccH---HHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            33332222   378999999999999999999999999864

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-46  Score=357.04  Aligned_cols=238  Identities=21%  Similarity=0.285  Sum_probs=195.3

Q ss_pred             hcCcccceeeeecCceEEEEEEe------CCCcEEEEEec-----------------------cCCccccceEEEecCce
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL------PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQC  192 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~------~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~  192 (412)
                      .++|++.+.||+|+||.||+|.+      .+++.||||++                       +|+++....+.+.+++.
T Consensus        22 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~  101 (311)
T d1t46a_          22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP  101 (311)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCE
Confidence            46899999999999999999975      34679999965                       48889989999999999


Q ss_pred             EEEEEEeccCCceeeeeccCc---------------ccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEe
Q 042435          193 MFFIYEYMERGSLFCVLRDDD---------------EAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILL  257 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~---------------~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl  257 (412)
                      .++|||||++|+|.++++...               ....+++..+..++.||++||+|||++   +++||||||+||++
T Consensus       102 ~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~---~ivHrDLKp~NIl~  178 (311)
T d1t46a_         102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNILL  178 (311)
T ss_dssp             CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred             EEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---Ceeecccccccccc
Confidence            999999999999999986542               123589999999999999999999999   99999999999999


Q ss_pred             cCCCcEEEeecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCC-cccccccccCC
Q 042435          258 NSNLEAFVADFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHP-GELLLSLSSSS  334 (412)
Q Consensus       258 ~~~~~~kl~DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P-~~~~~~~~~~~  334 (412)
                      +.++.+|++|||+++........  .....||+.|+|||++.+..++.++|||||||++|||+|+..| |..       .
T Consensus       179 ~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~-------~  251 (311)
T d1t46a_         179 THGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPG-------M  251 (311)
T ss_dssp             ETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTT-------C
T ss_pred             cccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCC-------C
Confidence            99999999999999876544322  2345789999999999999999999999999999999995544 431       1


Q ss_pred             CCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          335 GPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      .....+..++.....+..+.....   .+.+|+.+||+.||++||||+||+++|+++.
T Consensus       252 ~~~~~~~~~i~~~~~~~~~~~~~~---~l~~Li~~cl~~dP~~RPs~~~il~~L~~~i  306 (311)
T d1t46a_         252 PVDSKFYKMIKEGFRMLSPEHAPA---EMYDIMKTCWDADPLKRPTFKQIVQLIEKQI  306 (311)
T ss_dssp             CSSHHHHHHHHHTCCCCCCTTSCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCCCcccccH---HHHHHHHHHcCCChhHCcCHHHHHHHHHHhh
Confidence            222334455555555444333323   3889999999999999999999999998653

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=2.1e-46  Score=348.84  Aligned_cols=230  Identities=23%  Similarity=0.281  Sum_probs=188.4

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec-------------------------------cCCccccceEEEecC
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-------------------------------HHSETEDSAFVVYSP  190 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-------------------------------~~~~~~~~~~~~~~~  190 (412)
                      ++|++.+.||+|+||+||+|+. .+|+.||||++                               .|+++.....++.++
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            6899999999999999999976 57999999975                               378888888889999


Q ss_pred             ceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCC
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGT  270 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGl  270 (412)
                      +..|+|||||++|+|.++++...   .+++.++..++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~~~---~l~e~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~  156 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTEKV---TLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFGF  156 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             cceEEEEEcCCCchHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHc---CCcccccccceEEEcCCCCeEEccchh
Confidence            99999999999999999997543   599999999999999999999999   999999999999999999999999999


Q ss_pred             ccccCCCCCCcccccccccccccccccC------cccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHh
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYT------MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDIL  344 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~  344 (412)
                      ++....... .....||+.|+|||.+.+      ..++.++||||+||++|||+||+.||...       ........+.
T Consensus       157 a~~~~~~~~-~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~-------~~~~~~~~i~  228 (277)
T d1phka_         157 SCQLDPGEK-LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHR-------KQMLMLRMIM  228 (277)
T ss_dssp             CEECCTTCC-BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHH
T ss_pred             eeEccCCCc-eeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCC-------CHHHHHHHHH
Confidence            987755432 344579999999999853      34688999999999999999999999732       1112222233


Q ss_pred             hhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          345 YQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ......+. .........+.+++.+||+.||++|||++|++++
T Consensus       229 ~~~~~~~~-~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h  270 (277)
T d1phka_         229 SGNYQFGS-PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH  270 (277)
T ss_dssp             HTCCCCCT-TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             hCCCCCCC-cccccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            33222211 1111223348899999999999999999999765

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-46  Score=353.39  Aligned_cols=224  Identities=26%  Similarity=0.317  Sum_probs=187.5

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||+||+|+. .+|+.||||++                        +|+++.....++.+++..|+||
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence            5799999999999999999987 56999999964                        6889999999999999999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      |||++|+|..++....   .+++.....++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+|+.....
T Consensus        84 E~~~gg~l~~~~~~~~---~~~~~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~  157 (316)
T d1fota_          84 DYIEGGELFSLLRKSQ---RFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV  157 (316)
T ss_dssp             CCCCSCBHHHHHHHTS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSSC
T ss_pred             eecCCccccccccccc---cccccHHHHHHHHHHHhhhhhccC---cEEccccCchheeEcCCCCEEEecCccceEeccc
Confidence            9999999998887654   578889999999999999999998   9999999999999999999999999999876433


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                         .....||+.|+|||++.+..++.++|||||||++|||+||+.||...       ........+.......+  ....
T Consensus       158 ---~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~-------~~~~~~~~i~~~~~~~p--~~~s  225 (316)
T d1fota_         158 ---TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS-------NTMKTYEKILNAELRFP--PFFN  225 (316)
T ss_dssp             ---BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS-------SHHHHHHHHHHCCCCCC--TTSC
T ss_pred             ---cccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCc-------CHHHHHHHHHcCCCCCC--CCCC
Confidence               23468999999999999999999999999999999999999999732       11122223333322221  2222


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                         ..+.+++.+||+.||.+||     |++|+++|
T Consensus       226 ---~~~~~li~~~L~~dp~~R~~~~r~t~~~il~H  257 (316)
T d1fota_         226 ---EDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH  257 (316)
T ss_dssp             ---HHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred             ---HHHHHHHHHHhhhCHHhccccchhhHHHHHcC
Confidence               2378899999999999996     89999875

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-46  Score=355.88  Aligned_cols=237  Identities=23%  Similarity=0.289  Sum_probs=183.9

Q ss_pred             hcCcccce-eeeecCceEEEEEEe-CCCcEEEEEec-----------------cCCccccceEEEec----CceEEEEEE
Q 042435          142 TEYFHIRY-CIGTGGYDSVYKAEL-PDGKVVALKKL-----------------HHSETEDSAFVVYS----PQCMFFIYE  198 (412)
Q Consensus       142 ~~~f~~~~-~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------~~~~~~~~~~~~~~----~~~~~lv~e  198 (412)
                      .++|++.. +||+|+||+||+|.. .+++.||||++                 +|+++.....++.+    ....|+|||
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~ivmE   89 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVME   89 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCcHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEEEEEE
Confidence            46788764 699999999999976 57999999965                 57888887776543    467899999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC---CCcEEEeecCCccccC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS---NLEAFVADFGTVRLLD  275 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~---~~~~kl~DfGla~~~~  275 (412)
                      ||++|+|.+++..... ..+++.++..++.|++.||+|||++   +|+||||||+|||++.   ++.+||+|||+++...
T Consensus        90 y~~gg~L~~~i~~~~~-~~l~e~~~~~i~~qi~~al~ylH~~---~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~  165 (335)
T d2ozaa1          90 CLDGGELFSRIQDRGD-QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  165 (335)
T ss_dssp             CCCSEEHHHHHHSCSC-CCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSTTCCEEECCCTTCEECC
T ss_pred             CCCCCcHHHHHHhcCC-CCcCHHHHHHHHHHHHHHHHHHHHc---CCccccccccccccccccccccccccccceeeecc
Confidence            9999999999976432 2589999999999999999999999   9999999999999975   5679999999998765


Q ss_pred             CCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchh
Q 042435          276 VDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQK  355 (412)
Q Consensus       276 ~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (412)
                      ... ......||+.|+|||++.+..++.++|||||||++|||+||+.||.........   ......+.......+. ..
T Consensus       166 ~~~-~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~---~~~~~~i~~~~~~~~~-~~  240 (335)
T d2ozaa1         166 SHN-SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAIS---PGMKTRIRMGQYEFPN-PE  240 (335)
T ss_dssp             CCC-CCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC-----------CCCSCSSSCCT-TH
T ss_pred             CCC-ccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHH---HHHHHHHhcCCCCCCC-cc
Confidence            433 234567999999999999999999999999999999999999999742111000   0000001111111111 11


Q ss_pred             hHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          356 IIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       356 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .......+.+++.+||+.||++|||+.|++++
T Consensus       241 ~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  272 (335)
T d2ozaa1         241 WSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH  272 (335)
T ss_dssp             HHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             cccCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence            12233458899999999999999999999985

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-46  Score=352.38  Aligned_cols=232  Identities=22%  Similarity=0.299  Sum_probs=183.6

Q ss_pred             ceeeeecCceEEEEEEeCCC----cEEEEEec----------------------cCCccccceEEEec-CceEEEEEEec
Q 042435          148 RYCIGTGGYDSVYKAELPDG----KVVALKKL----------------------HHSETEDSAFVVYS-PQCMFFIYEYM  200 (412)
Q Consensus       148 ~~~lG~G~~g~Vy~~~~~~~----~~vAvK~l----------------------~~~~~~~~~~~~~~-~~~~~lv~ey~  200 (412)
                      .++||+|+||+||+|.+.++    ..||||++                      +|+|+....+.+.. +...++|||||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            47899999999999987442    36899964                      68888888877664 56899999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      ++|+|.+++.....  .+++..+++++.|+++||.|||+.   +|+||||||+|||+++++.+||+|||+++........
T Consensus       112 ~~g~l~~~~~~~~~--~~~~~~~~~i~~qia~gL~~lH~~---~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~  186 (311)
T d1r0pa_         112 KHGDLRNFIRNETH--NPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFD  186 (311)
T ss_dssp             TTCBHHHHHHCTTC--CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCC
T ss_pred             ecCchhhhhccccc--cchHHHHHHHHHHHHHhhhhhccc---CcccCCccHHhEeECCCCCEEEecccchhhccccccc
Confidence            99999998876543  478899999999999999999998   9999999999999999999999999999876543222


Q ss_pred             ----cccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhh
Q 042435          281 ----RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKI  356 (412)
Q Consensus       281 ----~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (412)
                          .....||+.|+|||.+.+..++.++||||||+++|||+||..||....       ........+.....+..+...
T Consensus       187 ~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~-------~~~~~~~~i~~g~~~~~p~~~  259 (311)
T d1r0pa_         187 SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV-------NTFDITVYLLQGRRLLQPEYC  259 (311)
T ss_dssp             CTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC-------------CHHHHHTTCCCCCCTTC
T ss_pred             cceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCC-------CHHHHHHHHHcCCCCCCcccC
Confidence                233568999999999999999999999999999999999888876321       111112222222222222222


Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCCC
Q 042435          357 IQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTPM  394 (412)
Q Consensus       357 ~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~  394 (412)
                      .   ..+.+++.+||+.||++||||.||+++|+++...
T Consensus       260 ~---~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~  294 (311)
T d1r0pa_         260 P---DPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  294 (311)
T ss_dssp             C---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             c---HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence            2   2478999999999999999999999999988643

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.4e-46  Score=349.03  Aligned_cols=236  Identities=22%  Similarity=0.310  Sum_probs=179.7

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecC----ce
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSP----QC  192 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~----~~  192 (412)
                      .++|++.+.||+|+||+||+|.. .+|+.||||.+                        +|+++.....++...    ..
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            46799999999999999999976 57999999975                        466666666555433    34


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .|+||||+++|+|.+++....   .+++.++..++.|++.||+|||++   +|+||||||+|||++.++..+++|||.++
T Consensus        86 ~~lvmE~~~g~~L~~~~~~~~---~l~~~~~~~i~~qi~~al~~lH~~---~iiHrDiKP~NIll~~~~~~~l~d~~~~~  159 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHTEG---PMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIAR  159 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTSCEEECCCTTCE
T ss_pred             EEEEEECCCCCEehhhhcccC---CCCHHHHHHHHHHHHHHHHHHHhC---CccCccccCcccccCccccceeehhhhhh
Confidence            899999999999998876543   599999999999999999999998   99999999999999999999999999987


Q ss_pred             ccCCCC---CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          273 LLDVDS---SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       273 ~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      ......   .......||+.|+|||++.+..++.++|||||||++|||+||+.||...       .........+.....
T Consensus       160 ~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~-------~~~~~~~~~~~~~~~  232 (277)
T d1o6ya_         160 AIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD-------SPVSVAYQHVREDPI  232 (277)
T ss_dssp             ECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS-------SHHHHHHHHHHCCCC
T ss_pred             hhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCc-------CHHHHHHHHHhcCCC
Confidence            654332   2234557999999999999999999999999999999999999999732       111122222222222


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCC-CHHHHHHHHhcC
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRP-TMQRISQELEGK  391 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-s~~evl~~L~~~  391 (412)
                      ++. .........+.+++.+||+.||++|| |++++.+.|.++
T Consensus       233 ~~~-~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~  274 (277)
T d1o6ya_         233 PPS-ARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV  274 (277)
T ss_dssp             CGG-GTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred             CCc-hhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHH
Confidence            111 11111223478899999999999999 899999988765

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-46  Score=351.78  Aligned_cols=238  Identities=21%  Similarity=0.270  Sum_probs=191.4

Q ss_pred             hcCcccceeeeecCceEEEEEEeC------CCcEEEEEec----------------------cCCccccceEEEecCceE
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAELP------DGKVVALKKL----------------------HHSETEDSAFVVYSPQCM  193 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~~------~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~~~  193 (412)
                      .++|++.+.||+|+||+||+|.+.      +++.||||++                      +|+++....+++...+..
T Consensus        19 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~   98 (308)
T d1p4oa_          19 REKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPT   98 (308)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSC
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCce
Confidence            467889999999999999999763      3678999975                      577888888889999999


Q ss_pred             EEEEEeccCCceeeeeccCcc-------cccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEe
Q 042435          194 FFIYEYMERGSLFCVLRDDDE-------AIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVA  266 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~-------~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~  266 (412)
                      ++||||+++|+|.+++.....       ...++|..+.+++.|+++||.|||++   +|+||||||+|||+++++++||+
T Consensus        99 ~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~---~ivHrDlk~~NiLld~~~~~Kl~  175 (308)
T d1p4oa_          99 LVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAEDFTVKIG  175 (308)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTTCCEEEC
T ss_pred             eEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeeceEcCCceeecCCceEEEe
Confidence            999999999999998865421       13479999999999999999999998   99999999999999999999999


Q ss_pred             ecCCccccCCCCCC--cccccccccccccccccCcccCcccccHHHHHHHHHHHhCC-CCcccccccccCCCCcchhhHH
Q 042435          267 DFGTVRLLDVDSSN--RTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGT-HPGELLLSLSSSSGPKIMLIDI  343 (412)
Q Consensus       267 DfGla~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~-~P~~~~~~~~~~~~~~~~~~~~  343 (412)
                      |||+++........  .....||+.|+|||.+.+..++.++||||||+++|||+||. .||...       ........+
T Consensus       176 DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~-------~~~~~~~~i  248 (308)
T d1p4oa_         176 DFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL-------SNEQVLRFV  248 (308)
T ss_dssp             CTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS-------CHHHHHHHH
T ss_pred             ecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCC-------CHHHHHHHH
Confidence            99999876543322  23346899999999999999999999999999999999985 665421       111122222


Q ss_pred             hhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCCC
Q 042435          344 LYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKTP  393 (412)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~  393 (412)
                      .+.. .++.+....   ..+.+++.+||+.||++||||+||+++|++..+
T Consensus       249 ~~~~-~~~~p~~~~---~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~  294 (308)
T d1p4oa_         249 MEGG-LLDKPDNCP---DMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  294 (308)
T ss_dssp             HTTC-CCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             HhCC-CCCCcccch---HHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            2222 222222222   248899999999999999999999999988754

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-45  Score=353.70  Aligned_cols=224  Identities=19%  Similarity=0.255  Sum_probs=187.5

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec------------------------cCCccccceEEEecCceEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL------------------------HHSETEDSAFVVYSPQCMFFIY  197 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l------------------------~~~~~~~~~~~~~~~~~~~lv~  197 (412)
                      ++|++.+.||+|+||.||+|+. .+|+.||||.+                        +|+++......+...+..++||
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence            5799999999999999999987 57999999964                        6788888888899999999999


Q ss_pred             EeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCC
Q 042435          198 EYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVD  277 (412)
Q Consensus       198 ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~  277 (412)
                      ||+.+|+|.+++....   .+++..+..++.||+.||.|||++   +|+||||||+|||++.++.+||+|||+|+.....
T Consensus       121 e~~~~g~l~~~l~~~~---~l~e~~~~~i~~qi~~aL~yLH~~---~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~  194 (350)
T d1rdqe_         121 EYVAGGEMFSHLRRIG---RFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR  194 (350)
T ss_dssp             ECCTTCBHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred             ccccccchhhhHhhcC---CCCHHHHHHHHHHHHHHHHHHHhC---CEecCcCCHHHcccCCCCCEEeeeceeeeecccc
Confidence            9999999998886543   589999999999999999999999   9999999999999999999999999999876533


Q ss_pred             CCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhH
Q 042435          278 SSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKII  357 (412)
Q Consensus       278 ~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (412)
                         .....||+.|||||++.+..++.++|||||||++|||+||+.||...       ........+.......+  ....
T Consensus       195 ---~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~-------~~~~~~~~i~~~~~~~p--~~~s  262 (350)
T d1rdqe_         195 ---TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD-------QPIQIYEKIVSGKVRFP--SHFS  262 (350)
T ss_dssp             ---BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-------SHHHHHHHHHHCCCCCC--TTCC
T ss_pred             ---cccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCc-------CHHHHHHHHhcCCCCCC--ccCC
Confidence               23457999999999999999999999999999999999999999732       11122223333322221  2222


Q ss_pred             HHHHHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          358 QDIILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       358 ~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                         ..+.+++.+||+.||.+|+     |++|+++|
T Consensus       263 ---~~~~~li~~~L~~dP~kR~~~~r~t~~ell~H  294 (350)
T d1rdqe_         263 ---SDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNH  294 (350)
T ss_dssp             ---HHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred             ---HHHHHHHHHHhhhCHHhccccccccHHHHHcC
Confidence               2378899999999999994     89999864

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-45  Score=350.23  Aligned_cols=232  Identities=22%  Similarity=0.236  Sum_probs=189.6

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec--------------------cCCccccceEEEecCceEEEEEEec
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL--------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l--------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      .++|++.+.||+|+||+||+|.. .+|+.||||.+                    +|+++.....++.+.+..|+|||||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~~   83 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFI   83 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEecC
Confidence            46799999999999999999977 46899999954                    6889999999999999999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC--CCcEEEeecCCccccCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS--NLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~--~~~~kl~DfGla~~~~~~~  278 (412)
                      ++|+|.+++....  ..+++.++..++.||+.||+|||++   +|+||||||+|||++.  ...+||+|||+++......
T Consensus        84 ~gg~L~~~i~~~~--~~l~e~~~~~i~~qi~~al~yLH~~---~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~  158 (321)
T d1tkia_          84 SGLDIFERINTSA--FELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD  158 (321)
T ss_dssp             CCCBHHHHHTSSS--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC
T ss_pred             CCCcHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHHc---CCCcccccccceeecCCCceEEEEcccchhhccccCC
Confidence            9999999987653  2489999999999999999999999   9999999999999974  4589999999998764332


Q ss_pred             CCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCccchhhHH
Q 042435          279 SNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPPINQKIIQ  358 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (412)
                       ......||+.|+|||...+..++.++||||+||++|||++|+.||...       ........+.......+. .....
T Consensus       159 -~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~-------~~~~~~~~i~~~~~~~~~-~~~~~  229 (321)
T d1tkia_         159 -NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE-------TNQQIIENIMNAEYTFDE-EAFKE  229 (321)
T ss_dssp             -EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS-------SHHHHHHHHHHTCCCCCH-HHHTT
T ss_pred             -cccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCC-------CHHHHHHHHHhCCCCCCh-hhccC
Confidence             234457899999999999999999999999999999999999998732       111222333333332221 11111


Q ss_pred             HHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          359 DIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       359 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+.+++.+||..||++|||++|++++
T Consensus       230 ~s~~~~~li~~~L~~dp~~R~s~~eil~h  258 (321)
T d1tkia_         230 ISIEAMDFVDRLLVKERKSRMTASEALQH  258 (321)
T ss_dssp             SCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            23347899999999999999999999985

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-45  Score=344.76  Aligned_cols=234  Identities=21%  Similarity=0.250  Sum_probs=178.0

Q ss_pred             ceeeeecCceEEEEEEe-CCCcEEEEEec--------------------------cCCccccceEEEecCceEEEEEEec
Q 042435          148 RYCIGTGGYDSVYKAEL-PDGKVVALKKL--------------------------HHSETEDSAFVVYSPQCMFFIYEYM  200 (412)
Q Consensus       148 ~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l--------------------------~~~~~~~~~~~~~~~~~~~lv~ey~  200 (412)
                      .++||+|+||+||+|.. .+|+.||||++                          +|+++.....++..++..++||||+
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~   82 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   82 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhh
Confidence            57899999999999987 46999999965                          4677888888899999999999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSSN  280 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~~  280 (412)
                      +++++..+.....   .+++..+..++.||+.||+|||++   +|+||||||+|||++.++.+||+|||+++........
T Consensus        83 ~~~~~~~~~~~~~---~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~  156 (299)
T d1ua2a_          83 ETDLEVIIKDNSL---VLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRA  156 (299)
T ss_dssp             SEEHHHHHTTCCS---SCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCC
T ss_pred             cchHHhhhhhccc---CCCHHHHHHHHHHHHHHHHHhhcc---ceecccCCcceEEecCCCccccccCccccccCCCccc
Confidence            9887776654332   588899999999999999999999   9999999999999999999999999999877655545


Q ss_pred             cccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccc-------------cCCCCcc-hhhHHh-
Q 042435          281 RTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLS-------------SSSGPKI-MLIDIL-  344 (412)
Q Consensus       281 ~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~-------------~~~~~~~-~~~~~~-  344 (412)
                      .....||+.|+|||++... .++.++|||||||++|||+||+.||.......             ....+.. ...... 
T Consensus       157 ~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  236 (299)
T d1ua2a_         157 YTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVT  236 (299)
T ss_dssp             CCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCC
T ss_pred             ccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhh
Confidence            5556899999999998654 57999999999999999999999986321100             0000000 000000 


Q ss_pred             hhccCC-ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          345 YQRLSP-PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       345 ~~~~~~-~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...... +...........+.+++.+||+.||++|||++|+++|
T Consensus       237 ~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~H  280 (299)
T d1ua2a_         237 FKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM  280 (299)
T ss_dssp             CCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred             hccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhCC
Confidence            000000 0000000112348899999999999999999999875

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-45  Score=337.52  Aligned_cols=219  Identities=24%  Similarity=0.316  Sum_probs=177.7

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-----------------------------CCccccceEEEecCce
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-----------------------------HSETEDSAFVVYSPQC  192 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-----------------------------~~~~~~~~~~~~~~~~  192 (412)
                      ++|++.+.||+|+||+||+|.. .+|+.||||+++                             |+|+......+.+++.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            5799999999999999999976 579999999642                             5677777778888999


Q ss_pred             EEEEEEeccC-CceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC-CCcEEEeecCC
Q 042435          193 MFFIYEYMER-GSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS-NLEAFVADFGT  270 (412)
Q Consensus       193 ~~lv~ey~~~-gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~-~~~~kl~DfGl  270 (412)
                      .++||||+.+ +++.+++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++. ++.+||+|||+
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~~---~l~e~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NIll~~~~~~vkl~DFG~  157 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITERG---ALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFGS  157 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHHC---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred             EEEEEEeccCcchHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHC---CCccccCcccceEEecCCCeEEECcccc
Confidence            9999999976 56666665433   589999999999999999999999   9999999999999985 47999999999


Q ss_pred             ccccCCCCCCcccccccccccccccccCccc-CcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIALELVYTMVV-TEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      ++.....  ......||+.|+|||++.+..+ +.++||||+||++|||+||+.||....             ++......
T Consensus       158 a~~~~~~--~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~-------------~i~~~~~~  222 (273)
T d1xwsa_         158 GALLKDT--VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-------------EIIRGQVF  222 (273)
T ss_dssp             CEECCSS--CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------------HHHHCCCC
T ss_pred             ceecccc--cccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCch-------------HHhhcccC
Confidence            9865432  2345679999999999987665 567999999999999999999987321             11221111


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      .+  ....   ..+.+++.+||+.||++|||++|++++
T Consensus       223 ~~--~~~s---~~~~~li~~~L~~dp~~R~s~~eil~h  255 (273)
T d1xwsa_         223 FR--QRVS---SECQHLIRWCLALRPSDRPTFEEIQNH  255 (273)
T ss_dssp             CS--SCCC---HHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred             CC--CCCC---HHHHHHHHHHccCCHhHCcCHHHHhcC
Confidence            11  1111   237889999999999999999999875

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-45  Score=341.70  Aligned_cols=244  Identities=19%  Similarity=0.253  Sum_probs=183.6

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ++|++.+.||+|+||+||+|.. .+|+.||||++                       +|+++.+....+.+++..++|||
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            6899999999999999999976 57999999964                       57788888888999999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+.++ +.+++..... ..+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+|+......
T Consensus        82 ~~~~~-~~~~~~~~~~-~~l~e~~~~~~~~qil~~L~yLH~~---~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~  156 (298)
T d1gz8a_          82 FLHQD-LKKFMDASAL-TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV  156 (298)
T ss_dssp             CCSEE-HHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCS
T ss_pred             ecCCc-hhhhhhhhcc-cCCCHHHHHHHHHHHHHHHHHhhcC---CEEccccCchheeecccCcceeccCCcceeccCCc
Confidence            99764 4444432221 2589999999999999999999999   99999999999999999999999999998776555


Q ss_pred             CCcccccccccccccccccCcc-cCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcchhhHHh-----
Q 042435          279 SNRTLQAGTYGYIALELVYTMV-VTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKIMLIDIL-----  344 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~-~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~~~~~~~-----  344 (412)
                      .......||+.|+|||.+.... ++.++|||||||++|||++|+.||........        ....+.......     
T Consensus       157 ~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  236 (298)
T d1gz8a_         157 RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDY  236 (298)
T ss_dssp             BCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred             ccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhcccccccccc
Confidence            5555668999999999877655 57899999999999999999999963210000        000000000000     


Q ss_pred             hhccC----CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH--HhcC
Q 042435          345 YQRLS----PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE--LEGK  391 (412)
Q Consensus       345 ~~~~~----~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~--L~~~  391 (412)
                      .....    .............+.+++.+||+.||++|||++|++++  ++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H~ff~~~  289 (298)
T d1gz8a_         237 KPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDV  289 (298)
T ss_dssp             CTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTC
T ss_pred             ccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCCHhhccC
Confidence            00000    00000001112347889999999999999999999987  5544

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-44  Score=339.72  Aligned_cols=246  Identities=20%  Similarity=0.258  Sum_probs=179.8

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CC-CcEEEEEec--------------------------cCCccccceEEEe----
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PD-GKVVALKKL--------------------------HHSETEDSAFVVY----  188 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~-~~~vAvK~l--------------------------~~~~~~~~~~~~~----  188 (412)
                      ..++|++.+.||+|+||+||+|.. .+ ++.||||++                          +|+++.+...++.    
T Consensus         5 ~~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~   84 (305)
T d1blxa_           5 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   84 (305)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             CcCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccc
Confidence            357899999999999999999986 34 678999964                          3667766665553    


Q ss_pred             -cCceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEee
Q 042435          189 -SPQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVAD  267 (412)
Q Consensus       189 -~~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~D  267 (412)
                       .....+++|||++++++........  ..+++.....++.|++.||+|||++   +|+||||||+|||++.++.+||+|
T Consensus        85 ~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~qi~~aL~yLH~~---~ivHrDiKp~NILi~~~~~~kl~d  159 (305)
T d1blxa_          85 DRETKLTLVFEHVDQDLTTYLDKVPE--PGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLAD  159 (305)
T ss_dssp             SSEEEEEEEEECCSCBHHHHHHHSCT--TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECS
T ss_pred             ccCceEEEEEEeccCCchhhhhhccC--CCCCHHHHHHHHHHHHHHHHHHHhC---CEEecCCCccEEEEcCCCCeeecc
Confidence             2357899999998877654433322  2489999999999999999999999   999999999999999999999999


Q ss_pred             cCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccc-------------cCC
Q 042435          268 FGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS-------------SSS  334 (412)
Q Consensus       268 fGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~-------------~~~  334 (412)
                      ||+++..... .......||+.|+|||++.+..++.++||||+||++|||+||+.||.......             ...
T Consensus       160 fg~~~~~~~~-~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~  238 (305)
T d1blxa_         160 FGLARIYSFQ-MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEED  238 (305)
T ss_dssp             CCSCCCCCGG-GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGG
T ss_pred             hhhhhhhccc-ccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhc
Confidence            9998865332 22345679999999999999999999999999999999999999996321000             000


Q ss_pred             CC-cch-hhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH--HhcCC
Q 042435          335 GP-KIM-LIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE--LEGKT  392 (412)
Q Consensus       335 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~--L~~~~  392 (412)
                      .+ ... ...........+...........+.+|+.+||+.||++|||++|++++  ++++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~Hpff~~i~  300 (305)
T d1blxa_         239 WPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLE  300 (305)
T ss_dssp             SCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCC
T ss_pred             ccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhcCch
Confidence            00 000 000000000000000001112237789999999999999999999886  55543

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.3e-44  Score=337.12  Aligned_cols=239  Identities=21%  Similarity=0.237  Sum_probs=178.7

Q ss_pred             cCcccceeeeecCceEEEEEEeCCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEEe
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELPDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYEY  199 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~ey  199 (412)
                      ++|++.+.||+|+||+||+|+.++|+.||||++                       +|+++......+...+..++++||
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            689999999999999999999999999999965                       577777778888999999999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~~  279 (412)
                      +.++.+..+.....   .++...+..++.||+.||+|||++   +|+||||||+|||++.++.+|++|||.+........
T Consensus        82 ~~~~~~~~~~~~~~---~l~~~~~~~i~~qi~~~L~~LH~~---~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~  155 (286)
T d1ob3a_          82 LDQDLKKLLDVCEG---GLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR  155 (286)
T ss_dssp             CSEEHHHHHHTSTT---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---
T ss_pred             ehhhhHHHHHhhcC---CcchhhhHHHHHHHHHHHHHhccC---cEEecCCCCceeeEcCCCCEEecccccceecccCcc
Confidence            98877766655443   599999999999999999999998   999999999999999999999999999987655444


Q ss_pred             CcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccc----------cCC-CCcchhhHHh--h
Q 042435          280 NRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLS----------SSS-GPKIMLIDIL--Y  345 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~----------~~~-~~~~~~~~~~--~  345 (412)
                      ......|++.|+|||.+.+. .++.++|||||||++|||++|+.||.......          ... ..........  .
T Consensus       156 ~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  235 (286)
T d1ob3a_         156 KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYD  235 (286)
T ss_dssp             ------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCC
T ss_pred             ccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhcc
Confidence            44555789999999998754 56899999999999999999999996321100          000 0000000000  0


Q ss_pred             hcc----CCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 QRL----SPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ~~~----~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...    ..+...........+.+++.+||+.||++|||++|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~H  281 (286)
T d1ob3a_         236 PNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH  281 (286)
T ss_dssp             TTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             cccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            000    000000000112247899999999999999999999864

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.7e-43  Score=333.19  Aligned_cols=239  Identities=16%  Similarity=0.224  Sum_probs=177.5

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEecc-------------------CCc-cccceEEEecCceEEEEEEecc
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH-------------------HSE-TEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~-------------------~~~-~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      ++|++.+.||+|+||.||+|.. .+|+.||||.++                   |.+ +..........+..++||||+ 
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~~-   85 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL-   85 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTSCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEECC-
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccCHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEEc-
Confidence            5699999999999999999976 568999999653                   333 223334456778889999999 


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEec---CCCcEEEeecCCccccCCCC
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLN---SNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~---~~~~~kl~DfGla~~~~~~~  278 (412)
                      +|+|.+.+....  ..+++..+..++.|++.||+|||++   +|+||||||+|||++   .+..+|++|||+|+......
T Consensus        86 ~~~l~~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~  160 (299)
T d1ckia_          86 GPSLEDLFNFCS--RKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDAR  160 (299)
T ss_dssp             CCBHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTT
T ss_pred             CCchhhhhhhcc--CCCcHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHhhccccccCCCceeeeeccCcceeccccc
Confidence            456665554332  2589999999999999999999999   999999999999985   45679999999998765432


Q ss_pred             C-------CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccCCc
Q 042435          279 S-------NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLSPP  351 (412)
Q Consensus       279 ~-------~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (412)
                      .       ......||+.|+|||.+.+..++.++|||||||++|||+||+.||.......    ...............+
T Consensus       161 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~----~~~~~~~~~~~~~~~~  236 (299)
T d1ckia_         161 THQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAAT----KRQKYERISEKKMSTP  236 (299)
T ss_dssp             TCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-----------HHHHHHHHHHSC
T ss_pred             cccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHH----HHHHHHHhhcccCCCC
Confidence            2       1234579999999999999999999999999999999999999997431110    0111111111111111


Q ss_pred             cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcC
Q 042435          352 INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGK  391 (412)
Q Consensus       352 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~  391 (412)
                      ...........+.+++.+||+.||++||+++++.+.|++.
T Consensus       237 ~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~  276 (299)
T d1ckia_         237 IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNL  276 (299)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHH
T ss_pred             hhHhccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHH
Confidence            1111111223478899999999999999999998888765

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1e-42  Score=326.81  Aligned_cols=240  Identities=15%  Similarity=0.153  Sum_probs=182.7

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEecc--------------------CCccccceEEEecCceEEEEEEecc
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLH--------------------HSETEDSAFVVYSPQCMFFIYEYME  201 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~--------------------~~~~~~~~~~~~~~~~~~lv~ey~~  201 (412)
                      ++|++.+.||+|+||+||+|+. .+|+.||||.++                    ++++.........+...++||||+ 
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~~-   83 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-   83 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEECC-
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccCcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEec-
Confidence            5799999999999999999986 468999999752                    234444555677788999999999 


Q ss_pred             CCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecC-----CCcEEEeecCCccccCC
Q 042435          202 RGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNS-----NLEAFVADFGTVRLLDV  276 (412)
Q Consensus       202 ~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~-----~~~~kl~DfGla~~~~~  276 (412)
                      +|+|.+++.....  .+++.++..++.|++.||+|||+.   +|+||||||+|||++.     ++.+||+|||+|+....
T Consensus        84 ~~~l~~~~~~~~~--~~~~~~~~~i~~q~~~~l~~lH~~---giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~  158 (293)
T d1csna_          84 GPSLEDLLDLCGR--KFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRD  158 (293)
T ss_dssp             CCBHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBC
T ss_pred             CCCHHHHHHhhcc--chhhHHHHHHHHHHHHHHHHHHHC---CceeccCCccceeecCcccccCCceEEcccceeEEccc
Confidence            6899888765432  589999999999999999999998   9999999999999964     57899999999987643


Q ss_pred             CCC-------CcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhhccC
Q 042435          277 DSS-------NRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQRLS  349 (412)
Q Consensus       277 ~~~-------~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (412)
                      ...       ......||+.|||||++.+..++.++|||||||++|||+||+.||......    ........+......
T Consensus       159 ~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~----~~~~~~~~i~~~~~~  234 (293)
T d1csna_         159 PVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAA----TNKQKYERIGEKKQS  234 (293)
T ss_dssp             TTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSC----CHHHHHHHHHHHHHH
T ss_pred             CccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccch----hHHHHHHHHHhccCC
Confidence            221       123457999999999999999999999999999999999999999732100    000111111111111


Q ss_pred             CccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHHHhcCC
Q 042435          350 PPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQELEGKT  392 (412)
Q Consensus       350 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~  392 (412)
                      .+........+..+.+++..|++.+|++||+++.+.+.|+++.
T Consensus       235 ~~~~~l~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~~  277 (293)
T d1csna_         235 TPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVL  277 (293)
T ss_dssp             SCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHH
T ss_pred             CChHHhcCCCCHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence            1111100111234788999999999999999999988887653

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-42  Score=333.99  Aligned_cols=244  Identities=19%  Similarity=0.234  Sum_probs=174.5

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------cCCccccceEEEec------CceEEEEEEe
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------HHSETEDSAFVVYS------PQCMFFIYEY  199 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------~~~~~~~~~~~~~~------~~~~~lv~ey  199 (412)
                      +|+..++||+|+||+||+|+. .+|+.||||++                 +|+++.....++..      ....++||||
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey  100 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDY  100 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEEC
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEec
Confidence            588889999999999999987 46999999965                 56777776666532      3357999999


Q ss_pred             ccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC-cEEEeecCCccccCCCC
Q 042435          200 MERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL-EAFVADFGTVRLLDVDS  278 (412)
Q Consensus       200 ~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~-~~kl~DfGla~~~~~~~  278 (412)
                      |+++.+..+.........+++.++..++.|++.||+|||++   +|+||||||+|||++.++ .+||+|||+++......
T Consensus       101 ~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~---~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~  177 (350)
T d1q5ka_         101 VPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGE  177 (350)
T ss_dssp             CSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTS
T ss_pred             cCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhc---CCcccCCCcceEEEecCCCceeEecccchhhccCCc
Confidence            98764443332222233699999999999999999999998   999999999999999764 89999999998765433


Q ss_pred             CCcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCcchhhHHhh----
Q 042435          279 SNRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPKIMLIDILY----  345 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~~~~~~~~~----  345 (412)
                      . .....||+.|+|||.+.+ ..++.++||||+||++|||++|+.||........        .............    
T Consensus       178 ~-~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~  256 (350)
T d1q5ka_         178 P-NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTE  256 (350)
T ss_dssp             C-CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---C
T ss_pred             c-cccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhh
Confidence            2 234579999999998765 5689999999999999999999999963211000        0000000000000    


Q ss_pred             ---hccCCcc-c-hhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH--HhcC
Q 042435          346 ---QRLSPPI-N-QKIIQDIILVSTIALACLRSKPKSRPTMQRISQE--LEGK  391 (412)
Q Consensus       346 ---~~~~~~~-~-~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~--L~~~  391 (412)
                         +...... . .........+.+|+.+||+.||++|||+.|++++  ++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~  309 (350)
T d1q5ka_         257 FKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDEL  309 (350)
T ss_dssp             CCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGG
T ss_pred             ccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccc
Confidence               0000000 0 0000112237889999999999999999999975  4444

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-42  Score=327.11  Aligned_cols=240  Identities=17%  Similarity=0.183  Sum_probs=172.8

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEec--------
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYS--------  189 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~--------  189 (412)
                      .++|++.+.||+|+||+||+|.. .+|+.||||++                       +|+++.....++..        
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            47899999999999999999986 57999999975                       35555555444432        


Q ss_pred             CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecC
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFG  269 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfG  269 (412)
                      .+..++||||++++.+........   .++...+..++.|++.||.|||++   +|+||||||+|||++.++.+|++|||
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~~~---~~~~~~~~~i~~qil~~l~~lH~~---~ivHrDlKp~NILl~~~~~~kl~dfg  162 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNVLV---KFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFG  162 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCTTC---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCT
T ss_pred             CceEEEEEeccCCCccchhhhccc---ccccHHHHHHHHHHHHHHHHhccC---CEEecCcCchheeecCCCcEEeeecc
Confidence            456899999998877664443332   578889999999999999999999   99999999999999999999999999


Q ss_pred             CccccCCCC----CCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccc---------cCC-
Q 042435          270 TVRLLDVDS----SNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLS---------SSS-  334 (412)
Q Consensus       270 la~~~~~~~----~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~---------~~~-  334 (412)
                      +++......    .......||+.|+|||++.+. .++.++|||||||++|||++|+.||+......         ... 
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~  242 (318)
T d3blha1         163 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSIT  242 (318)
T ss_dssp             TCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred             eeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCC
Confidence            998665322    122345799999999998765 68999999999999999999999996321000         000 


Q ss_pred             ------CCcchhhHHhhhccC-Cccchhh---HHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          335 ------GPKIMLIDILYQRLS-PPINQKI---IQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       335 ------~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                            ............... .......   ......+.+|+.+||+.||++|||++|+++|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~H  305 (318)
T d3blha1         243 PEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  305 (318)
T ss_dssp             TTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             hhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcC
Confidence                  000000000000000 0000000   0112246789999999999999999999977

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-42  Score=324.89  Aligned_cols=229  Identities=27%  Similarity=0.366  Sum_probs=180.0

Q ss_pred             cCcccceeeeecCceEEEEEEe----CCCcEEEEEecc-------------------------C-CccccceEEEecCce
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL----PDGKVVALKKLH-------------------------H-SETEDSAFVVYSPQC  192 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~----~~~~~vAvK~l~-------------------------~-~~~~~~~~~~~~~~~  192 (412)
                      ++|++.+.||+|+||+||+|+.    .+|+.||||.++                         | +++......+.+...
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            6699999999999999999975    258999999652                         3 567677777888999


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .+++|||+.+|+|.+++....   .+.......++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~~---~~~e~~~~~~~~Qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~vkL~DFG~a~  177 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQRE---RFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSK  177 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEE
T ss_pred             eeeeeecccccHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHhhcC---CEEeccCCccceeecCCCCEEEeeccchh
Confidence            999999999999999887654   467788889999999999999999   99999999999999999999999999998


Q ss_pred             ccCCCCC-CcccccccccccccccccCc--ccCcccccHHHHHHHHHHHhCCCCcccccccccCCCCcchhhHHhhh--c
Q 042435          273 LLDVDSS-NRTLQAGTYGYIALELVYTM--VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSSSGPKIMLIDILYQ--R  347 (412)
Q Consensus       273 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~--~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~~~~~~~~~~~~~~--~  347 (412)
                      ....... ......|++.|+|||.+.+.  .++.++|||||||+||||+||+.||...       ........+...  .
T Consensus       178 ~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~-------~~~~~~~~i~~~~~~  250 (322)
T d1vzoa_         178 EFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVD-------GEKNSQAEISRRILK  250 (322)
T ss_dssp             ECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCT-------TSCCCHHHHHHHHHH
T ss_pred             hhcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCC-------CHHHHHHHHHHhccc
Confidence            6643322 23456799999999998754  4678999999999999999999999732       111112222211  1


Q ss_pred             cCCccchhhHHHHHHHHHHHHhcCcCCCCCCC-----CHHHHHHH
Q 042435          348 LSPPINQKIIQDIILVSTIALACLRSKPKSRP-----TMQRISQE  387 (412)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~evl~~  387 (412)
                      ..++.+..   ....+.+++.+||+.||++||     |++|+++|
T Consensus       251 ~~~~~~~~---~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~H  292 (322)
T d1vzoa_         251 SEPPYPQE---MSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH  292 (322)
T ss_dssp             CCCCCCTT---SCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred             CCCCCccc---CCHHHHHHHHHHcccCHHHcCCCCcccHHHHHcC
Confidence            11121222   223488899999999999999     48898874

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-41  Score=319.65  Aligned_cols=239  Identities=17%  Similarity=0.225  Sum_probs=183.1

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCceEEEEEE
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQCMFFIYE  198 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~~~~lv~e  198 (412)
                      ++|++.+.||+|+||+||+|+. .+|+.||||++                       +|+++......+...+..++|+|
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            5799999999999999999986 57899999965                       46677777778889999999999


Q ss_pred             eccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccccCCCC
Q 042435          199 YMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRLLDVDS  278 (412)
Q Consensus       199 y~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~~~~~~  278 (412)
                      |+.+++|..++....   .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||.++......
T Consensus        82 ~~~~~~l~~~~~~~~---~~~~~~~~~~~~q~~~aL~~lH~~---~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~  155 (292)
T d1unla_          82 FCDQDLKKYFDSCNG---DLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV  155 (292)
T ss_dssp             CCSEEHHHHHHHTTT---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSCC
T ss_pred             ecccccccccccccc---ccchhHHHHHHHHHHHHHHHhhcC---CEeeecccCcccccccCCceeeeecchhhcccCCC
Confidence            999999888776554   588999999999999999999999   99999999999999999999999999999876655


Q ss_pred             CCcccccccccccccccccCcc-cCcccccHHHHHHHHHHHhCCCCcccccccc----------cC-CCCc-chhhHHhh
Q 042435          279 SNRTLQAGTYGYIALELVYTMV-VTEKCVIYSFGVVALEVLMGTHPGELLLSLS----------SS-SGPK-IMLIDILY  345 (412)
Q Consensus       279 ~~~~~~~gt~~y~aPE~~~~~~-~s~ksDv~S~Gvil~elltg~~P~~~~~~~~----------~~-~~~~-~~~~~~~~  345 (412)
                      .......+++.|+|||.+.... ++.++||||+||++|||++|+.||.......          .. .... ........
T Consensus       156 ~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (292)
T d1unla_         156 RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPD  235 (292)
T ss_dssp             SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTT
T ss_pred             ccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhccc
Confidence            5555567889999999987655 6899999999999999999999974211000          00 0000 00000000


Q ss_pred             hc------cCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          346 QR------LSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       346 ~~------~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ..      ...............+.+++.+||+.||++|||++|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~H  283 (292)
T d1unla_         236 YKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH  283 (292)
T ss_dssp             CCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             ccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            00      0000000011112347789999999999999999999875

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-42  Score=328.43  Aligned_cols=240  Identities=21%  Similarity=0.233  Sum_probs=172.4

Q ss_pred             hhcCcccceeeeecCceEEEEEEe-CCCcEEEEEec----------------------cCCccccceEEEecCc----eE
Q 042435          141 ATEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL----------------------HHSETEDSAFVVYSPQ----CM  193 (412)
Q Consensus       141 ~~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l----------------------~~~~~~~~~~~~~~~~----~~  193 (412)
                      .+++|++.+.||+|+||+||+|.. .+|+.||||++                      +|+++.....++....    ..
T Consensus         6 i~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~   85 (345)
T d1pmea_           6 VGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD   85 (345)
T ss_dssp             CCTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred             cCCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccce
Confidence            346799999999999999999975 68999999976                      4566666666654432    23


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      +++++|+.+|+|.+++...    .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+||+|||+++.
T Consensus        86 ~~l~~~~~~g~L~~~l~~~----~l~~~~i~~i~~qil~al~yLH~~---~iiHRDIKp~NILl~~~~~~kl~DfG~a~~  158 (345)
T d1pmea_          86 VYLVTHLMGADLYKLLKTQ----HLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARV  158 (345)
T ss_dssp             EEEEEECCCEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             EEEEEeecCCchhhhhhcC----CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCcceEEECCCCCEEEcccCceee
Confidence            4555667799999998654    489999999999999999999999   999999999999999999999999999986


Q ss_pred             cCCCCC---CcccccccccccccccccC-cccCcccccHHHHHHHHHHHhCCCCcccccccc--------cCCCCcc---
Q 042435          274 LDVDSS---NRTLQAGTYGYIALELVYT-MVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS--------SSSGPKI---  338 (412)
Q Consensus       274 ~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~--------~~~~~~~---  338 (412)
                      ......   ......||+.|+|||++.. ..++.++||||+||++|||++|+.||.......        .......   
T Consensus       159 ~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~  238 (345)
T d1pmea_         159 ADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLN  238 (345)
T ss_dssp             CCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHH
T ss_pred             ccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhh
Confidence            544322   2244579999999999854 567899999999999999999999996321000        0000000   


Q ss_pred             -----hhhHHhhhcc--CC-ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          339 -----MLIDILYQRL--SP-PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       339 -----~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                           ..........  .. +...........+.+++.+||+.||++|||++|++++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~h  295 (345)
T d1pmea_         239 CIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH  295 (345)
T ss_dssp             TCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                 0000000000  00 0000000111247899999999999999999999987

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-41  Score=326.23  Aligned_cols=240  Identities=22%  Similarity=0.251  Sum_probs=172.6

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEecCc------
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYSPQ------  191 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~~~------  191 (412)
                      .++|++.+.||+|+||+||+|.. .+|+.||||++                       +|+++.....++...+      
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            46899999999999999999976 56999999975                       4666666666665543      


Q ss_pred             eEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCc
Q 042435          192 CMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTV  271 (412)
Q Consensus       192 ~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla  271 (412)
                      ..++||||+ +.+|..+.+..    .+++..+..++.|++.||+|||++   +|+||||||+|||++.++.+|++|||++
T Consensus        97 ~~~lv~e~~-~~~l~~~~~~~----~l~~~~~~~~~~qi~~aL~~LH~~---~IiHrDiKp~NIL~~~~~~~kl~Dfg~a  168 (346)
T d1cm8a_          97 DFYLVMPFM-GTDLGKLMKHE----KLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLA  168 (346)
T ss_dssp             CCEEEEECC-SEEHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             eEEEEEecc-cccHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHhC---CCcccccCcchhhcccccccccccccce
Confidence            579999999 55676665433    499999999999999999999999   9999999999999999999999999999


Q ss_pred             cccCCCCCCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccccc--------CCCCc-----
Q 042435          272 RLLDVDSSNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS--------SSGPK-----  337 (412)
Q Consensus       272 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~--------~~~~~-----  337 (412)
                      +.....   .....||+.|+|||++.+. .++.++||||+||++|||++|+.||........        ...+.     
T Consensus       169 ~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (346)
T d1cm8a_         169 RQADSE---MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQR  245 (346)
T ss_dssp             EECCSS---CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHT
T ss_pred             eccCCc---cccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhh
Confidence            876433   3446799999999998764 578999999999999999999999863211000        00000     


Q ss_pred             --chhhHHhhhcc---CC-ccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH--HhcCC
Q 042435          338 --IMLIDILYQRL---SP-PINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE--LEGKT  392 (412)
Q Consensus       338 --~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~--L~~~~  392 (412)
                        ...........   .. ............+.+|+.+||..||++|||+.|++++  ++.+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~  308 (346)
T d1cm8a_         246 LQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLH  308 (346)
T ss_dssp             CSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC
T ss_pred             hcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCC
Confidence              00000000000   00 0000001112247789999999999999999999987  66554

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=4.4e-41  Score=320.76  Aligned_cols=235  Identities=15%  Similarity=0.160  Sum_probs=175.2

Q ss_pred             cCcccceeeeecCceEEEEEEe-CCCcEEEEEec-------------------cCCccccceEEEe--cCceEEEEEEec
Q 042435          143 EYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-------------------HHSETEDSAFVVY--SPQCMFFIYEYM  200 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-------------------~~~~~~~~~~~~~--~~~~~~lv~ey~  200 (412)
                      ++|++.++||+|+||+||+|+. .+|+.||||++                   .|+++......+.  .....++|||||
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~  114 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHV  114 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEEECC
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEEeec
Confidence            5799999999999999999977 57999999975                   2677777666665  345799999999


Q ss_pred             cCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCC-cEEEeecCCccccCCCCC
Q 042435          201 ERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNL-EAFVADFGTVRLLDVDSS  279 (412)
Q Consensus       201 ~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~-~~kl~DfGla~~~~~~~~  279 (412)
                      ++|+|..+.+      .++...+..++.||+.||+|||++   +|+||||||+|||++.++ .+||+|||+++...... 
T Consensus       115 ~~~~L~~~~~------~l~e~~i~~i~~qil~aL~~LH~~---gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~-  184 (328)
T d3bqca1         115 NNTDFKQLYQ------TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ-  184 (328)
T ss_dssp             CSCBGGGTTT------SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTC-
T ss_pred             CCCcHHHHhc------CCCHHHHHHHHHHHHHHHHHHhhc---ccccccccccceEEcCCCCeeeecccccceeccCCC-
Confidence            9999976642      488999999999999999999999   999999999999998654 68999999998765433 


Q ss_pred             CcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCccccccccc---------------------CCCCc
Q 042435          280 NRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLSS---------------------SSGPK  337 (412)
Q Consensus       280 ~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~---------------------~~~~~  337 (412)
                      ......+|+.|+|||.+.+. .++.++||||+||++|||++|+.||........                     .....
T Consensus       185 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~  264 (328)
T d3bqca1         185 EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELD  264 (328)
T ss_dssp             CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCC
T ss_pred             cccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccC
Confidence            23445789999999998765 479999999999999999999999863210000                     00000


Q ss_pred             chhhHHhhhccCCcc-----chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          338 IMLIDILYQRLSPPI-----NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       338 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ....+..........     ..........+.+|+.+||..||++|||++|+++|
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~H  319 (328)
T d3bqca1         265 PRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH  319 (328)
T ss_dssp             GGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             cccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            000000000000000     00001112347899999999999999999999874

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-40  Score=318.35  Aligned_cols=235  Identities=21%  Similarity=0.191  Sum_probs=168.4

Q ss_pred             cCcccceeeeecCceEEEEEEeC-CCcEEEEEec-----------------------cCCccccceEEEe------cCce
Q 042435          143 EYFHIRYCIGTGGYDSVYKAELP-DGKVVALKKL-----------------------HHSETEDSAFVVY------SPQC  192 (412)
Q Consensus       143 ~~f~~~~~lG~G~~g~Vy~~~~~-~~~~vAvK~l-----------------------~~~~~~~~~~~~~------~~~~  192 (412)
                      ++|++.++||+|+||+||+|... +|+.||||++                       +|+++.....++.      ....
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            67999999999999999999864 6999999975                       4677777666664      3468


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .|+|||||.++.+. .+..     .+++..+..++.|++.||+|||+.   +|+||||||+|||++.++..|++|||+++
T Consensus        97 ~~iv~Ey~~~~l~~-~~~~-----~~~~~~i~~~~~qil~gl~~LH~~---giiHrDlKP~Nil~~~~~~~kl~df~~~~  167 (355)
T d2b1pa1          97 VYLVMELMDANLCQ-VIQM-----ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLAR  167 (355)
T ss_dssp             EEEEEECCSEEHHH-HHTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC--
T ss_pred             eEEEEeccchHHHH-hhhc-----CCCHHHHHHHHHHHHHHHHHhhhc---ccccccCCccccccccccceeeechhhhh
Confidence            89999999765444 3322     488999999999999999999999   99999999999999999999999999988


Q ss_pred             ccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccc-----------------cC--
Q 042435          273 LLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLS-----------------SS--  333 (412)
Q Consensus       273 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~-----------------~~--  333 (412)
                      ...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.......                 ..  
T Consensus       168 ~~~~~~-~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~  246 (355)
T d2b1pa1         168 TAGTSF-MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQ  246 (355)
T ss_dssp             --------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSC
T ss_pred             cccccc-ccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhh
Confidence            654332 2344578999999999999999999999999999999999999985221000                 00  


Q ss_pred             -----------CCCcchhhHHhhhccCCccchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          334 -----------SGPKIMLIDILYQRLSPPINQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       334 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                                 .............................+.+++.+|++.||++|||++|+++|
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~H  311 (355)
T d2b1pa1         247 PTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH  311 (355)
T ss_dssp             HHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             hhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence                       000000011111111111112222334558899999999999999999999976

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-40  Score=317.50  Aligned_cols=236  Identities=21%  Similarity=0.201  Sum_probs=171.1

Q ss_pred             hcCcccceeeeecCceEEEEEEe-CCCcEEEEEec-----------------------cCCccccceEEEec-----Cce
Q 042435          142 TEYFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKL-----------------------HHSETEDSAFVVYS-----PQC  192 (412)
Q Consensus       142 ~~~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l-----------------------~~~~~~~~~~~~~~-----~~~  192 (412)
                      +++|++.+.||+|+||+||+|+. .+|+.||||++                       +|+++.....++..     ...
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            56799999999999999999976 57999999976                       35555555555532     234


Q ss_pred             EEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          193 MFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       193 ~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .+++++|+.+|+|.+++...    .+++..+..++.||+.||+|||++   +|+||||||+|||++.++.+|++|||++.
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~----~l~e~~~~~i~~qil~aL~~LH~~---giiHrDiKp~NILi~~~~~~kl~dfg~a~  169 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQ----KLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLAR  169 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCC----
T ss_pred             eEEEEEeecCCchhhhcccc----cccHHHHHHHHHHHHHHHHHHHhC---CCcccccCCccccccccccccccccchhc
Confidence            46677888899999988654    499999999999999999999999   99999999999999999999999999987


Q ss_pred             ccCCCCCCcccccccccccccccccCc-ccCcccccHHHHHHHHHHHhCCCCcccccccc---------c-------CCC
Q 042435          273 LLDVDSSNRTLQAGTYGYIALELVYTM-VVTEKCVIYSFGVVALEVLMGTHPGELLLSLS---------S-------SSG  335 (412)
Q Consensus       273 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~---------~-------~~~  335 (412)
                      ....   ......||+.|+|||...+. .++.++|||||||++|||++|+.||.......         .       ...
T Consensus       170 ~~~~---~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~  246 (348)
T d2gfsa1         170 HTDD---EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKI  246 (348)
T ss_dssp             CCTG---GGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTC
T ss_pred             ccCc---ccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhc
Confidence            5432   22345789999999987665 46889999999999999999999986321000         0       000


Q ss_pred             CcchhhHHhhhccCCcc---chhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHHH
Q 042435          336 PKIMLIDILYQRLSPPI---NQKIIQDIILVSTIALACLRSKPKSRPTMQRISQE  387 (412)
Q Consensus       336 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~  387 (412)
                      ...............+.   ..........+.+|+.+||+.||++|||++|++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~H  301 (348)
T d2gfsa1         247 SSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH  301 (348)
T ss_dssp             CCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             cchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcC
Confidence            00000000000000000   00000112347889999999999999999999985

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-36  Score=292.32  Aligned_cols=238  Identities=18%  Similarity=0.192  Sum_probs=166.2

Q ss_pred             CcccceeeeecCceEEEEEEe-CCCcEEEEEeccCC-------------------------------ccccceEEE--ec
Q 042435          144 YFHIRYCIGTGGYDSVYKAEL-PDGKVVALKKLHHS-------------------------------ETEDSAFVV--YS  189 (412)
Q Consensus       144 ~f~~~~~lG~G~~g~Vy~~~~-~~~~~vAvK~l~~~-------------------------------~~~~~~~~~--~~  189 (412)
                      +|++.++||+|+||+||+|+. .+|+.||||+++..                               ++......+  ..
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~   93 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKG   93 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEE
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeecc
Confidence            499999999999999999976 57999999987532                               222222222  23


Q ss_pred             CceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHh-CCCCCcEEeCCCCCCEEecCCC------c
Q 042435          190 PQCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHH-DCTPSIVHRDISSNNILLNSNL------E  262 (412)
Q Consensus       190 ~~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~-~~~~~ivHrDlkp~NILl~~~~------~  262 (412)
                      ....+++++++..+..............+++..+..++.|++.||+|||+ .   +|+||||||+|||++.++      .
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~---~IvHrDlKp~NIll~~~~~~~~~~~  170 (362)
T d1q8ya_          94 PNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC---GIIHTDIKPENVLMEIVDSPENLIQ  170 (362)
T ss_dssp             TTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT---CEECSCCSGGGEEEEEEETTTTEEE
T ss_pred             ccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhc---CcccccCChhHeeeeccCcccccce
Confidence            45667777777665543333222233458889999999999999999998 5   899999999999997654      4


Q ss_pred             EEEeecCCccccCCCCCCcccccccccccccccccCcccCcccccHHHHHHHHHHHhCCCCcccccccccC---------
Q 042435          263 AFVADFGTVRLLDVDSSNRTLQAGTYGYIALELVYTMVVTEKCVIYSFGVVALEVLMGTHPGELLLSLSSS---------  333 (412)
Q Consensus       263 ~kl~DfGla~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~s~ksDv~S~Gvil~elltg~~P~~~~~~~~~~---------  333 (412)
                      ++++|||.+......   .....||+.|+|||++.+..++.++||||+||+++||++|+.||.........         
T Consensus       171 ~kl~dfg~s~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~  247 (362)
T d1q8ya_         171 IKIADLGNACWYDEH---YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQI  247 (362)
T ss_dssp             EEECCCTTCEETTBC---CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHH
T ss_pred             eeEeecccccccccc---cccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHH
Confidence            899999999765332   23457999999999999999999999999999999999999998632110000         


Q ss_pred             -----CCCcchhh------HHhh-----hccCC----c-------cchhhHHHHHHHHHHHHhcCcCCCCCCCCHHHHHH
Q 042435          334 -----SGPKIMLI------DILY-----QRLSP----P-------INQKIIQDIILVSTIALACLRSKPKSRPTMQRISQ  386 (412)
Q Consensus       334 -----~~~~~~~~------~~~~-----~~~~~----~-------~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~  386 (412)
                           ..+.....      ....     .....    +       ...........+.+++.+|+..||.+|||++|+++
T Consensus       248 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~  327 (362)
T d1q8ya_         248 IELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVN  327 (362)
T ss_dssp             HHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHT
T ss_pred             HHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence                 00000000      0000     00000    0       00011233456889999999999999999999998


Q ss_pred             H
Q 042435          387 E  387 (412)
Q Consensus       387 ~  387 (412)
                      |
T Consensus       328 H  328 (362)
T d1q8ya_         328 H  328 (362)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.87  E-value=3.3e-23  Score=180.75  Aligned_cols=146  Identities=15%  Similarity=0.171  Sum_probs=100.3

Q ss_pred             ccceeeeecCceEEEEEEeCCCcEEEEEeccCCccc-----cceE--------------------------E----EecC
Q 042435          146 HIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSETE-----DSAF--------------------------V----VYSP  190 (412)
Q Consensus       146 ~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~~~-----~~~~--------------------------~----~~~~  190 (412)
                      .+.+.||+|+||+||+|...+|+.||||.++.....     ....                          .    ....
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~   82 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW   82 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             hhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEe
Confidence            467899999999999999889999999976532110     0000                          0    0011


Q ss_pred             ceEEEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCCCCCcEEeCCCCCCEEecCCCcEEEeecCC
Q 042435          191 QCMFFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDCTPSIVHRDISSNNILLNSNLEAFVADFGT  270 (412)
Q Consensus       191 ~~~~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~~~~ivHrDlkp~NILl~~~~~~kl~DfGl  270 (412)
                      ...+++|||++++.+.+          ++......++.|++.+++|||++   +|+||||||+|||++++ .++|+|||.
T Consensus        83 ~~~~lvme~~~~~~~~~----------l~~~~~~~i~~ql~~~l~~lH~~---giiHrDiKP~NILv~~~-~~~liDFG~  148 (191)
T d1zara2          83 EGNAVLMELIDAKELYR----------VRVENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVSEE-GIWIIDFPQ  148 (191)
T ss_dssp             ETTEEEEECCCCEEGGG----------CCCSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEETT-EEEECCCTT
T ss_pred             cCCEEEEEeeccccccc----------hhhHHHHHHHHHHHHHHHHHhhC---CEEEccCChhheeeeCC-CEEEEECCC
Confidence            22368999998754432          33444567899999999999998   99999999999999864 599999999


Q ss_pred             ccccCCCCCCccccccccccccc------ccccCcccCcccccHHHHHHH
Q 042435          271 VRLLDVDSSNRTLQAGTYGYIAL------ELVYTMVVTEKCVIYSFGVVA  314 (412)
Q Consensus       271 a~~~~~~~~~~~~~~gt~~y~aP------E~~~~~~~s~ksDv~S~Gvil  314 (412)
                      |+........        .|...      +. ....|+.++|+||..--+
T Consensus       149 a~~~~~~~~~--------~~l~rd~~~~~~~-f~r~y~~~~d~~s~~~~~  189 (191)
T d1zara2         149 SVEVGEEGWR--------EILERDVRNIITY-FSRTYRTEKDINSAIDRI  189 (191)
T ss_dssp             CEETTSTTHH--------HHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHH
T ss_pred             cccCCCCCcH--------HHHHHHHHHHHHH-HcCCCCCcccHHHHHHHH
Confidence            9765322110        11111      11 135678899999975433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.78  E-value=8.5e-10  Score=101.80  Aligned_cols=65  Identities=28%  Similarity=0.362  Sum_probs=56.4

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC-CCcCC-CCcccccCcCCCCCCCCCCcc
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT-YLRDN-PPKSFVGNKGLCGHVQGFLSC   69 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~-~~~~~-~~~~~~gn~~lcg~~~~~~~c   69 (412)
                      ..|++|||+.| ++|.||+ +.++++|+.||||+|+|+|+||. +-+.+ ....+.||+.|||.|+  ++|
T Consensus       244 ~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~pl--p~c  312 (313)
T d1ogqa_         244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL--PAC  312 (313)
T ss_dssp             TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTS--SCC
T ss_pred             cccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCC--CCC
Confidence            46889999999 9999998 89999999999999999999998 33445 7788899999999875  466

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.84  E-value=4e-05  Score=67.47  Aligned_cols=128  Identities=13%  Similarity=0.055  Sum_probs=80.4

Q ss_pred             HHHHHhhcCcccceeeeecCceEEEEEEeCCCcEEEEEeccCCc----------------------cccceEEEecCceE
Q 042435          136 ENLIDATEYFHIRYCIGTGGYDSVYKAELPDGKVVALKKLHHSE----------------------TEDSAFVVYSPQCM  193 (412)
Q Consensus       136 ~~l~~~~~~f~~~~~lG~G~~g~Vy~~~~~~~~~vAvK~l~~~~----------------------~~~~~~~~~~~~~~  193 (412)
                      .++....+.|+..+..+.++.+.||+... +++.+.+|+.....                      ..........++..
T Consensus         7 ~~l~~~~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~   85 (263)
T d1j7la_           7 PELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWS   85 (263)
T ss_dssp             HHHHHHHTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEE
T ss_pred             HHHHHhhhceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCce
Confidence            46666667777666554455678999876 55666778653211                      11112234456778


Q ss_pred             EEEEEeccCCceeeeeccCcccccCCHHHHHHHHHHHHHHHHHHHhCC--------------------------------
Q 042435          194 FFIYEYMERGSLFCVLRDDDEAIELNWTRRMNIVKSVAHALSYLHHDC--------------------------------  241 (412)
Q Consensus       194 ~lv~ey~~~gsL~~~l~~~~~~~~l~~~~~~~i~~~ia~gL~~LH~~~--------------------------------  241 (412)
                      ++||+++++.++.+.....        .....++.++++.++.||+..                                
T Consensus        86 ~lv~~~l~G~~~~~~~~~~--------~~~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (263)
T d1j7la_          86 NLLMSEADGVLCSEEYEDE--------QSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCEN  157 (263)
T ss_dssp             EEEEECCSSEEHHHHTTTC--------SCHHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGG
T ss_pred             EEEEEeccccccccccccc--------ccHHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhc
Confidence            9999999887765432211        112224455555555555421                                


Q ss_pred             ------------------------CCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          242 ------------------------TPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       242 ------------------------~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                                              .+.++|+|+.|.||+++++...-|+||+.+.
T Consensus       158 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         158 WEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             GSTTCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             ccccccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhcc
Confidence                                    1137899999999999987666799998775

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.19  E-value=0.00029  Score=61.33  Aligned_cols=29  Identities=21%  Similarity=0.265  Sum_probs=25.1

Q ss_pred             CcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          244 SIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       244 ~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      .++|+|+.|.||+++++..+-|+||+.+.
T Consensus       176 ~liHgD~~~~Nvl~~~~~~~~iID~~~~~  204 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENGRFSGFIDCGRLG  204 (255)
T ss_dssp             EEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             eEEeCCCCCcceEEeCCceEEEEEchhcc
Confidence            47999999999999987667899998765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00021  Score=57.75  Aligned_cols=58  Identities=21%  Similarity=0.229  Sum_probs=39.8

Q ss_pred             ceechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCCCcCC-C--CcccccCcCCC
Q 042435            2 IVLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTYLRDN-P--PKSFVGNKGLC   60 (412)
Q Consensus         2 ~~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~~~~~-~--~~~~~gn~~lc   60 (412)
                      +..|+.|+|+.| +++..|. +.++++|+.||||+|+|+ .+|...|.. +  .-...+|+--|
T Consensus        55 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          55 LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             ccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCcccC
Confidence            346788888888 7776666 677888888888888887 677655544 2  23344665544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00034  Score=61.61  Aligned_cols=57  Identities=21%  Similarity=0.154  Sum_probs=45.1

Q ss_pred             eechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCCCcCC---CCcccccCcCCC
Q 042435            3 VLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTYLRDN---PPKSFVGNKGLC   60 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~~~~~---~~~~~~gn~~lc   60 (412)
                      ..|+.|+++.| +++..|. +..+++|+.||||+|+|+ .||.+++..   ..-...|||--|
T Consensus       148 ~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            35788999999 9987776 788999999999999999 899866544   334455777666

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.50  E-value=0.00098  Score=55.45  Aligned_cols=36  Identities=11%  Similarity=0.154  Sum_probs=19.8

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccc
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDG   39 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G   39 (412)
                      .|+.|+|+.| +++.++. +..+++|+.|++|+|++++
T Consensus        55 ~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~   92 (192)
T d1w8aa_          55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE   92 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE
T ss_pred             eEeeeeccccccccccccccccccccceeeeccccccc
Confidence            4555555555 5555544 4455555555555555553

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=96.47  E-value=0.0017  Score=60.43  Aligned_cols=30  Identities=20%  Similarity=0.306  Sum_probs=25.6

Q ss_pred             CCcEEeCCCCCCEEecCCCcEEEeecCCccc
Q 042435          243 PSIVHRDISSNNILLNSNLEAFVADFGTVRL  273 (412)
Q Consensus       243 ~~ivHrDlkp~NILl~~~~~~kl~DfGla~~  273 (412)
                      ..++|+|+.|.|||++++ .++|+||..+..
T Consensus       223 ~~LiHGDl~~gNIlv~~~-~~~vID~E~a~~  252 (392)
T d2pula1         223 ETLIHGDLHTGSIFASEH-ETKVIDPEFAFY  252 (392)
T ss_dssp             CEEECSCCCGGGEEECSS-CEEECCCTTCEE
T ss_pred             cceeccCCcCCceeEcCC-ceEEechhhccc
Confidence            368999999999999876 489999988764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.28  E-value=0.00089  Score=60.13  Aligned_cols=43  Identities=14%  Similarity=0.064  Sum_probs=38.8

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCCCC
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPTYL   45 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~~~   45 (412)
                      ..|+.|+++.| ++|.+|.+..+++|+.||+|+|+|+|.||..+
T Consensus       221 ~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l  264 (313)
T d1ogqa_         221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             SCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred             ccccccccccccccccccccccccccccccCccCeecccCChHH
Confidence            45788999999 99999999899999999999999999999853

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.96  E-value=0.0013  Score=50.73  Aligned_cols=35  Identities=17%  Similarity=0.131  Sum_probs=20.0

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccc
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDG   39 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G   39 (412)
                      .|++||||+| ++ .+|+ +..+++|+.||+|+|.+++
T Consensus        21 ~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~   57 (124)
T d1dcea3          21 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN   57 (124)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             CCCEEECCCCccC-cchhhhhhhhcccccccccccccc
Confidence            4556666666 54 3433 5556666666666666653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.85  E-value=0.0018  Score=49.80  Aligned_cols=37  Identities=19%  Similarity=0.200  Sum_probs=32.1

Q ss_pred             hhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCCC
Q 042435            6 AFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         6 ~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      ++||||+| ++ .+|.+.+++.|+.||+|+|.++ .+|..
T Consensus         1 R~L~Ls~n~l~-~l~~l~~l~~L~~L~ls~N~l~-~lp~~   38 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLR-ALPPA   38 (124)
T ss_dssp             SEEECTTSCCS-SCCCGGGGTTCCEEECCSSCCC-CCCGG
T ss_pred             CEEEcCCCCCC-CCcccccCCCCCEEECCCCccC-cchhh
Confidence            47999999 87 6677889999999999999998 58863

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.59  E-value=0.0034  Score=51.97  Aligned_cols=40  Identities=18%  Similarity=0.219  Sum_probs=31.4

Q ss_pred             echhhccCCC-ceeeCCC--CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE--EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~--~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .+++|+|+.| +++.++.  +.++++|+.|++++|++++..|.
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~   72 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN   72 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccc
Confidence            4778888888 8877744  56788888888888888877765

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.51  E-value=0.02  Score=50.98  Aligned_cols=31  Identities=16%  Similarity=0.267  Sum_probs=27.0

Q ss_pred             CCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          242 TPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       242 ~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      ..+++|+|+.+.||+++++...-|.||+.+.
T Consensus       182 ~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         182 PAGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             CEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             ccccccCCcchhhhhcccccceeEecccccc
Confidence            3479999999999999988777899999774

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0037  Score=50.41  Aligned_cols=35  Identities=9%  Similarity=-0.009  Sum_probs=22.6

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCccccccc
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDG   39 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G   39 (412)
                      .|++||||.| ++ .++.+..+++|+.|++|+|.++.
T Consensus        42 ~L~~L~Ls~N~i~-~l~~~~~l~~L~~L~ls~N~i~~   77 (162)
T d1a9na_          42 QFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNNRICR   77 (162)
T ss_dssp             CCSEEECCSSCCC-EECCCCCCSSCCEEECCSSCCCE
T ss_pred             cCCEEECCCCCCC-ccCCcccCcchhhhhcccccccC
Confidence            4666777777 54 34556666677777777777665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0064  Score=53.45  Aligned_cols=41  Identities=20%  Similarity=0.059  Sum_probs=32.0

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTY   44 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~   44 (412)
                      .|+.|+|+.| +++..|. +.++++|..+++++|++++-.|..
T Consensus       154 ~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~  196 (284)
T d1ozna_         154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA  196 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             chhhcccccCcccccchhhhccccccchhhhhhccccccChhH
Confidence            4778888888 7776665 678888888888888888877753

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=94.72  E-value=0.03  Score=50.16  Aligned_cols=29  Identities=28%  Similarity=0.391  Sum_probs=23.9

Q ss_pred             CCCcEEeCCCCCCEEecCCCcEEEeecCCcc
Q 042435          242 TPSIVHRDISSNNILLNSNLEAFVADFGTVR  272 (412)
Q Consensus       242 ~~~ivHrDlkp~NILl~~~~~~kl~DfGla~  272 (412)
                      ..+++|+|+.+.|||++++  ..++||+-+.
T Consensus       191 p~~liHgDlh~~NvL~~~~--~~~IDFdd~~  219 (325)
T d1zyla1         191 TVLRLHGDCHAGNILWRDG--PMFVDLDDAR  219 (325)
T ss_dssp             CCEECCSSCSGGGEEESSS--EEECCCTTCC
T ss_pred             CceeecCCCCcccEEEeCC--ceEEechhcc
Confidence            3478999999999999753  4689998775

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.0072  Score=52.63  Aligned_cols=39  Identities=8%  Similarity=0.008  Sum_probs=32.1

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|||+.| +++..+. +.++++|+.|+|++|+|+ .||.
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~   72 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV   72 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc
Confidence            4789999999 8876655 788999999999999997 4664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.017  Score=49.10  Aligned_cols=45  Identities=13%  Similarity=-0.034  Sum_probs=36.4

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCCCCcCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPTYLRDN   48 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~~~~~~   48 (412)
                      .+++|||+.| ++...+. +.++++|+.||+|+|.+...+|...|.+
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~   76 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN   76 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEES
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccc
Confidence            5889999999 7754443 7899999999999999999888754443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=93.01  E-value=0.0055  Score=51.07  Aligned_cols=39  Identities=10%  Similarity=0.077  Sum_probs=28.9

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|++|||+.| ++ .|+.+.++++|+.||+|+|.++ .||.
T Consensus        48 ~~L~~L~Ls~n~I~-~i~~l~~l~~L~~L~Ls~N~i~-~i~~   87 (198)
T d1m9la_          48 KACKHLALSTNNIE-KISSLSGMENLRILSLGRNLIK-KIEN   87 (198)
T ss_dssp             TTCCEEECSEEEES-CCCCHHHHTTCCEEECCEEEEC-SCSS
T ss_pred             cccceeECcccCCC-CcccccCCccccChhhcccccc-cccc
Confidence            45778888888 55 5666777888888888888876 4664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=92.93  E-value=0.017  Score=48.21  Aligned_cols=34  Identities=15%  Similarity=0.097  Sum_probs=18.1

Q ss_pred             chhhccCCC-ceeeCCCCCCCCCCCEEeCccccccc
Q 042435            5 LAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDG   39 (412)
Q Consensus         5 ~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G   39 (412)
                      |+.|+++.| ++. ++.+..+++|+.||+|+|++++
T Consensus        48 L~~L~l~~~~i~~-l~~l~~l~~L~~L~L~~n~i~~   82 (210)
T d1h6ta2          48 IDQIIANNSDIKS-VQGIQYLPNVTKLFLNGNKLTD   82 (210)
T ss_dssp             CCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCC
T ss_pred             ccEEECcCCCCCC-chhHhhCCCCCEEeCCCccccC
Confidence            455555555 332 3334555556666666666555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.26  E-value=0.039  Score=48.56  Aligned_cols=33  Identities=15%  Similarity=0.042  Sum_probs=15.5

Q ss_pred             chhhccCCC-ceeeCCC-CCCCCCCCEEeCcccccc
Q 042435            5 LAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLD   38 (412)
Q Consensus         5 ~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~   38 (412)
                      |++|+|+.| ++ .||+ +.++++|+.|+||+|+++
T Consensus       221 L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         221 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            444555555 43 2332 444555555555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.044  Score=47.75  Aligned_cols=40  Identities=8%  Similarity=0.039  Sum_probs=30.8

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|+.|+++.| +++..+. +.+++.|+.|++++|+|++-.|.
T Consensus       130 ~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_         130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccchhhhccccccccChhHhccccchhhcccccCcccccchh
Confidence            4678888888 8765555 67888899999999998875553

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=91.79  E-value=0.026  Score=51.17  Aligned_cols=36  Identities=11%  Similarity=0.086  Sum_probs=21.2

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCccccccc
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDG   39 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G   39 (412)
                      ..|++|||+.| +++ +|++.++++|+.|++++|.+++
T Consensus        66 ~nL~~L~Ls~N~l~~-l~~l~~L~~L~~L~L~~n~i~~  102 (384)
T d2omza2          66 NNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIAD  102 (384)
T ss_dssp             TTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCC
T ss_pred             CCCCEEeCcCCcCCC-CccccCCccccccccccccccc
Confidence            34566666666 554 3345566666666666666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.65  E-value=0.069  Score=42.14  Aligned_cols=41  Identities=12%  Similarity=-0.070  Sum_probs=31.8

Q ss_pred             eechhhccCCC--ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            3 VLLAFLSISAA--CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         3 ~~~~~l~~~~~--~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      ..|+.|+|+.|  ++..-+. +.++++|+.|++|+|+|+.--|.
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~   74 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD   74 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccc
Confidence            46788999766  6654444 88999999999999999875453

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.08  E-value=0.29  Score=44.62  Aligned_cols=27  Identities=19%  Similarity=0.193  Sum_probs=19.7

Q ss_pred             eeeeecCceEEEEEEeCCC--------cEEEEEec
Q 042435          149 YCIGTGGYDSVYKAELPDG--------KVVALKKL  175 (412)
Q Consensus       149 ~~lG~G~~g~Vy~~~~~~~--------~~vAvK~l  175 (412)
                      +.|+.|-.-.+|++..+++        +.|.++..
T Consensus        48 ~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~   82 (395)
T d1nw1a_          48 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVY   82 (395)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEE
T ss_pred             EEcCCccccceEEEEeCCCCccccCCCCcEEEEec
Confidence            5688899999999987543        45666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.86  E-value=0.033  Score=44.46  Aligned_cols=38  Identities=16%  Similarity=0.157  Sum_probs=31.9

Q ss_pred             ceechhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccc
Q 042435            2 IVLLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDG   39 (412)
Q Consensus         2 ~~~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G   39 (412)
                      +..|++|+|+.| ++...|. +.++++|+.|++++|+++.
T Consensus        62 l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~  101 (162)
T d1a9na_          62 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE  101 (162)
T ss_dssp             CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC
T ss_pred             CcchhhhhcccccccCCCccccccccccccceeccccccc
Confidence            457899999999 8776666 4679999999999999974

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=90.75  E-value=0.061  Score=47.68  Aligned_cols=36  Identities=25%  Similarity=0.243  Sum_probs=30.1

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|+.||||.+ ++ .+|++  +++|+.||+|+|+|+ ++|.
T Consensus        39 ~l~~LdLs~~~L~-~lp~~--~~~L~~L~Ls~N~l~-~lp~   75 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL--PPHLESLVASCNSLT-ELPE   75 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC--CTTCSEEECCSSCCS-SCCC
T ss_pred             CCCEEEeCCCCCC-CCCCC--CCCCCEEECCCCCCc-cccc
Confidence            3789999999 76 57874  568999999999998 8886

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.54  E-value=0.014  Score=46.67  Aligned_cols=37  Identities=19%  Similarity=0.173  Sum_probs=28.0

Q ss_pred             eechhhccCCC-ceee--CCC-CCCCCCCCEEeCccccccc
Q 042435            3 VLLAFLSISAA-CSGV--VEE-EPSSPSFLKSDMSFNNLDG   39 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~--ip~-~~~~~~l~~~~ls~N~l~G   39 (412)
                      ..|++||||.| ++..  ++. +..+++|+.||+|+|.++-
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~  105 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  105 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc
Confidence            36889999999 6542  223 4568899999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.25  E-value=0.11  Score=45.39  Aligned_cols=40  Identities=10%  Similarity=0.040  Sum_probs=33.4

Q ss_pred             echhhccCCC-ceeeCCC-CCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEE-EPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~-~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|||++| ++.-.+. +.+++.|+.+|+++|.++.-.|.
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~   73 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG   73 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchh
Confidence            4789999999 7766554 78999999999999999976564

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=88.82  E-value=0.074  Score=43.62  Aligned_cols=38  Identities=13%  Similarity=0.121  Sum_probs=29.2

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCC
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      .|++|++++| ++ .++.+..+++|+.||+|+|++++.-|
T Consensus        41 ~l~~L~l~~~~i~-~l~~l~~l~nL~~L~Ls~N~l~~~~~   79 (199)
T d2omxa2          41 QVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQLTDITP   79 (199)
T ss_dssp             TCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG
T ss_pred             CCCEEECCCCCCC-CccccccCCCcCcCccccccccCccc
Confidence            4678888888 44 46667788899999999999987433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=88.17  E-value=0.086  Score=43.18  Aligned_cols=36  Identities=11%  Similarity=0.086  Sum_probs=30.7

Q ss_pred             eechhhccCCC-ceeeCCCCCCCCCCCEEeCccccccc
Q 042435            3 VLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDG   39 (412)
Q Consensus         3 ~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G   39 (412)
                      ..|++|||+.| +++. +++.++++|+.|++++|.+..
T Consensus        62 ~nL~~L~Ls~N~l~~~-~~l~~l~~L~~L~l~~n~~~~   98 (199)
T d2omxa2          62 NNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIAD   98 (199)
T ss_dssp             TTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC
T ss_pred             CCcCcCccccccccCc-ccccCCccccccccccccccc
Confidence            46899999999 8874 448899999999999998865

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=88.12  E-value=0.13  Score=45.43  Aligned_cols=36  Identities=28%  Similarity=0.342  Sum_probs=28.1

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|++|+|+.| ++ .||+  .+++|+.|++++|+|+ .||.
T Consensus       285 ~L~~L~Ls~N~l~-~lp~--~~~~L~~L~L~~N~L~-~l~~  321 (353)
T d1jl5a_         285 SLEELNVSNNKLI-ELPA--LPPRLERLIASFNHLA-EVPE  321 (353)
T ss_dssp             TCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCS-CCCC
T ss_pred             CCCEEECCCCccC-cccc--ccCCCCEEECCCCcCC-cccc
Confidence            5888999888 66 5665  3578888999999987 6885

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.92  E-value=0.18  Score=42.21  Aligned_cols=39  Identities=13%  Similarity=0.114  Sum_probs=27.2

Q ss_pred             hccCCC-ceeeCCC--CCCCCCCCEEeCccccccccCCCCCcCC
Q 042435            8 LSISAA-CSGVVEE--EPSSPSFLKSDMSFNNLDGEIPTYLRDN   48 (412)
Q Consensus         8 l~~~~~-~~G~ip~--~~~~~~l~~~~ls~N~l~G~iP~~~~~~   48 (412)
                      ++++.| ++ .||.  +.++++|+.||+|+|+++ .+|...|.+
T Consensus       182 ~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~  223 (242)
T d1xwdc1         182 NLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLEN  223 (242)
T ss_dssp             ECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTT
T ss_pred             ccccccccc-cccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcC
Confidence            345555 54 4644  678889999999999988 677654544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=86.56  E-value=0.094  Score=47.18  Aligned_cols=37  Identities=14%  Similarity=0.181  Sum_probs=27.2

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCC
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      .|++|||+.| +++. +++.++++|+.|++++|++++ +|
T Consensus       308 ~l~~L~ls~n~l~~l-~~l~~l~~L~~L~L~~n~l~~-l~  345 (384)
T d2omza2         308 NLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVSD-VS  345 (384)
T ss_dssp             TCSEEECCSSCCSCC-GGGGGCTTCCEEECCSSCCCC-CG
T ss_pred             ccCeEECCCCCCCCC-cccccCCCCCEEECCCCCCCC-Ch
Confidence            4677888888 7764 346777888888888888875 44

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=85.84  E-value=0.18  Score=41.99  Aligned_cols=38  Identities=13%  Similarity=0.141  Sum_probs=32.2

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCC
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIP   42 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP   42 (412)
                      .|+.|+++.| ++ .++.+..+++|+.|++|+|++++..|
T Consensus        42 ~L~~L~l~~~~i~-~l~~l~~l~~L~~L~ls~n~i~~~~~   80 (227)
T d1h6ua2          42 GITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQITDLAP   80 (227)
T ss_dssp             TCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG
T ss_pred             CcCEEECCCCCCC-cchhHhcCCCCcEeecCCceeecccc
Confidence            5788999999 76 46778899999999999999988655

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=82.15  E-value=0.26  Score=40.86  Aligned_cols=38  Identities=21%  Similarity=0.229  Sum_probs=30.0

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCC
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      .|+.|+++.| +++ ++++.++++|+.||+|+|.+++ +|.
T Consensus       152 ~L~~L~l~~n~~~~-~~~l~~l~~L~~L~Ls~n~l~~-l~~  190 (227)
T d1h6ua2         152 NLQYLSIGNAQVSD-LTPLANLSKLTTLKADDNKISD-ISP  190 (227)
T ss_dssp             TCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCC-CGG
T ss_pred             cccccccccccccc-chhhcccccceecccCCCccCC-Chh
Confidence            4788999988 543 4458889999999999999986 553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=80.65  E-value=0.049  Score=44.93  Aligned_cols=35  Identities=20%  Similarity=0.032  Sum_probs=26.8

Q ss_pred             echhhccCCC-ceeeCCCCCCCCCCCEEeCccccccc
Q 042435            4 LLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDG   39 (412)
Q Consensus         4 ~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G   39 (412)
                      .|++|+++.| ++. ++.+.++++|+.||+|+|+++.
T Consensus        94 ~L~~L~l~~N~i~~-l~~~~~l~~L~~L~L~~N~i~~  129 (198)
T d1m9la_          94 TLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HCCEEECSEEECCC-HHHHHHHHHSSEEEESEEECCC
T ss_pred             cccccccccccccc-cccccccccccccccccchhcc
Confidence            4778888888 653 4556678888888888888864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=80.29  E-value=0.41  Score=39.22  Aligned_cols=40  Identities=5%  Similarity=0.013  Sum_probs=33.4

Q ss_pred             ceechhhccCCC-ceeeCCCCCCCCCCCEEeCccccccccCCC
Q 042435            2 IVLLAFLSISAA-CSGVVEEEPSSPSFLKSDMSFNNLDGEIPT   43 (412)
Q Consensus         2 ~~~~~~l~~~~~-~~G~ip~~~~~~~l~~~~ls~N~l~G~iP~   43 (412)
                      +..|++|+|+.| +++ +|++.++++|+.|++++|++++ +|.
T Consensus        67 l~~L~~L~L~~n~i~~-l~~~~~l~~L~~L~l~~n~i~~-l~~  107 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTD-IKPLANLKNLGWLFLDENKVKD-LSS  107 (210)
T ss_dssp             CTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCC-GGG
T ss_pred             CCCCCEEeCCCccccC-ccccccCccccccccccccccc-ccc
Confidence            346899999999 887 5567889999999999999986 554