BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042437
         (191 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2E5V|A Chain A, Crystal Structure Of L-Aspartate Oxidase From
           Hyperthermophilic Archaeon Sulfolobus Tokodaii
 pdb|2E5V|B Chain B, Crystal Structure Of L-Aspartate Oxidase From
           Hyperthermophilic Archaeon Sulfolobus Tokodaii
          Length = 472

 Score = 32.3 bits (72), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 10/65 (15%)

Query: 25  IWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRG--------SNEVYLMDLRGRVLFTILR 76
           +++ +  ++G G  + NENGE    + NYD RG        S  +Y+  L+G  +F  L 
Sbjct: 222 VFLLTETLRGEGAQIINENGERF--LFNYDKRGELAPRDILSRAIYIEMLKGHKVFIDLS 279

Query: 77  KVWLF 81
           K+  F
Sbjct: 280 KIEDF 284


>pdb|2BMO|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase
 pdb|2BMQ|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
           Complex With Nitrobenzene
 pdb|2BMR|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
           Complex With 3-Nitrotoluene
          Length = 447

 Score = 28.9 bits (63), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 14/109 (12%)

Query: 38  TVFNEN----GEIVYRIDNYDNRGSNEVYLM---------DLRGRVLFTILRKVWLFGGW 84
           T+F  N    G   +R+ N  +  + EV+           DL+ RV   + R +   G W
Sbjct: 297 TIFPNNSFLTGSAAFRVWNPIDENTTEVWTYAFVEKDMPEDLKRRVADAVQRSIGPAGFW 356

Query: 85  KGYRGDNGDKLNKERPRFQVSKKGQITLLSSSSNA-ETSCYKLEAGKSA 132
           +    +N + +++   ++Q S   QI  L    +     CY    GKSA
Sbjct: 357 ESDDNENMETMSQNGKKYQSSNIDQIASLGFGKDVYGDECYPGVVGKSA 405


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,031,614
Number of Sequences: 62578
Number of extensions: 187908
Number of successful extensions: 398
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 5
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)