BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042437
(191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUM1|LOR11_ARATH Protein LURP-one-related 11 OS=Arabidopsis thaliana GN=At3g14260
PE=2 SV=1
Length = 230
Score = 157 bits (396), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 95/206 (46%), Positives = 124/206 (60%), Gaps = 21/206 (10%)
Query: 1 MAKVHPLPIVEVA------EYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYD 54
M K+HP A Y+T+++ESFTIWMKSLV NGCTVF+ G I+YR+DNY+
Sbjct: 23 MVKIHPDLTTSGAGEETSSPYLTTEQESFTIWMKSLVFNTNGCTVFDSKGNIIYRVDNYN 82
Query: 55 NRGSNEVYLMDLRGRVLFTILR-KVWLFGGWKGYRG-----DNGDKLNKERPR---FQVS 105
++ EVYLMDL G VLFT+ R K LF W+GYR ++ KL R + FQV
Sbjct: 83 SKSCREVYLMDLSGHVLFTLRRQKFGLFKTWEGYRSSSATVESTTKLEYFRVKNNVFQVP 142
Query: 106 KKGQITLL----SSSSNAETSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGD 161
K + S N E CYK+ S+ I D + G ++AE +RKQS N G+ LGD
Sbjct: 143 NKDSSSSYRVNAGSCRNDEQYCYKMVTRGSSLAIED-NCGKLLAEVKRKQSIN-GLKLGD 200
Query: 162 DVLTLVVEPQVDHSFIMALVTVYGLM 187
DVLT++VE QVDHSFI+ LV + L+
Sbjct: 201 DVLTMMVESQVDHSFIIGLVLAHSLI 226
>sp|Q9SH27|LOR4_ARATH Protein LURP-one-related 4 OS=Arabidopsis thaliana GN=At1g63410
PE=3 SV=1
Length = 215
Score = 153 bits (386), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 87/193 (45%), Positives = 126/193 (65%), Gaps = 10/193 (5%)
Query: 1 MAKVHPLPIVEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNE 60
MA+V P + + Y++++RE+FT+WMKSLV Q NG TV+N NGEI YR++NYD + SNE
Sbjct: 1 MARVFPQAAIS-SPYMSTERETFTVWMKSLVYQTNGLTVYNSNGEITYRVENYD-KCSNE 58
Query: 61 VYLMDLRGRVLFTIL-RKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQIT----LLSS 115
V++MDL G +LFTI +K+WLFG W YR +E K+ I +
Sbjct: 59 VHIMDLHGNILFTIRKKKLWLFGSWYVYRECGSFTSTEEVKPCARIKRSSIRDGDWEVRD 118
Query: 116 SSNAETSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHS 175
+N + + K AF+I+D G+++A+ + KQSSN G+ LG+DVLTL V+P+VDHS
Sbjct: 119 ETNEVFWILRFDP-KFAFQIIDI-HGNIIAQVKPKQSSN-GITLGEDVLTLEVKPRVDHS 175
Query: 176 FIMALVTVYGLMR 188
++ LVTVYGL++
Sbjct: 176 LVVTLVTVYGLIK 188
>sp|Q67XV7|LOR3_ARATH Protein LURP-one-related 3 OS=Arabidopsis thaliana GN=At1g53890
PE=2 SV=2
Length = 217
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 126/214 (58%), Gaps = 32/214 (14%)
Query: 1 MAKVHP---LPIV------EVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRID 51
M K++P P+ ++ Y+T+++E FTIWMKSLV GCTVF+ G ++YR+D
Sbjct: 13 MVKIYPHLAFPVDMDVVQDKILPYLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVD 72
Query: 52 NYDNRG-SNEVYLMDLRGRVLFTI-LRKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQ 109
NYD++ SNEVY MDL G++LFT+ +K+ F W+GY N RF++ K +
Sbjct: 73 NYDSKSWSNEVYFMDLNGKILFTLRQKKLGFFKSWEGY--------NSTGTRFRLRKIFK 124
Query: 110 ITLLSSSSNA------------ETSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSGV 157
I SSS+ + SCYK+ S F I D S G ++AE + K S SG+
Sbjct: 125 ILPRESSSSYKVVMGSRIVDGDQQSCYKIVNRGSVFAIKDGS-GRLMAEVKNKLSDISGL 183
Query: 158 LLGDDVLTLVVEPQVDHSFIMALVTVYGLMRHRL 191
LGDDVLT++VEPQ+DHS IM +V Y L + +L
Sbjct: 184 DLGDDVLTMMVEPQLDHSLIMGIVIAYKLTKCKL 217
>sp|Q8LG32|LOR2_ARATH Protein LURP-one-related 2 OS=Arabidopsis thaliana GN=At1g53870
PE=2 SV=2
Length = 217
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 126/214 (58%), Gaps = 32/214 (14%)
Query: 1 MAKVHP---LPIV------EVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRID 51
M K++P P+ ++ Y+T+++E FTIWMKSLV GCTVF+ G ++YR+D
Sbjct: 13 MVKIYPHLAFPVDMDVVQDKILPYLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVD 72
Query: 52 NYDNRG-SNEVYLMDLRGRVLFTI-LRKVWLFGGWKGYRGDNGDKLNKERPRFQVSKKGQ 109
NYD++ SNEVY MDL G++LFT+ +K+ F W+GY N RF++ K +
Sbjct: 73 NYDSKSWSNEVYFMDLNGKILFTLRQKKLGFFKSWEGY--------NSTGTRFRLRKIFK 124
Query: 110 ITLLSSSSNA------------ETSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSGV 157
I SSS+ + SCYK+ S F I D S G ++AE + K S SG+
Sbjct: 125 ILPRESSSSYKVVMGSRIVDGDQQSCYKIVNRGSVFAIKDGS-GRLMAEVKNKLSDISGL 183
Query: 158 LLGDDVLTLVVEPQVDHSFIMALVTVYGLMRHRL 191
LGDDVLT++VEPQ+DHS IM +V Y L + +L
Sbjct: 184 DLGDDVLTMMVEPQLDHSLIMGIVIAYKLTKCKL 217
>sp|Q9ZVI6|LOR8_ARATH Protein LURP-one-related 8 OS=Arabidopsis thaliana GN=At2g38640
PE=2 SV=1
Length = 196
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 96/197 (48%), Gaps = 15/197 (7%)
Query: 1 MAKVHPLPIVEVAEYVTSKRES--FTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGS 58
M KVHP E + + + T+W KSL+ +G TV+N NGE+V+R+DNY N
Sbjct: 1 MTKVHPKFPSTCEESLCDSKAAVVLTVWKKSLLFNCDGFTVYNANGELVFRVDNYMNCPR 60
Query: 59 NEVYLMDLRGRVLFTILRKVWLFGG-WKGYRGDNGDKLNKERPRFQVSKKGQIT----LL 113
+ + LMD G L +I RK G W Y G+ + P F K I L
Sbjct: 61 DNIVLMDASGFPLLSIRRKKLSLGDCWMVYDGE-----TERDPIFTARKNVSIISNRKSL 115
Query: 114 SSSSNAETSCYKLEA--GKSAFKIVDCSRG-DVVAEARRKQSSNSGVLLGDDVLTLVVEP 170
+ S +T Y++E G+ + KI+D R AE +RK++ GV G DV L+VE
Sbjct: 116 AWVSAKKTVLYEIEGSYGQRSCKILDERRNKKKTAEIKRKETVIGGVAFGKDVYKLIVES 175
Query: 171 QVDHSFIMALVTVYGLM 187
+++ MAL + M
Sbjct: 176 EMEPRVAMALTIILDQM 192
>sp|Q9SSC7|LOR5_ARATH Protein LURP-one-related 5 OS=Arabidopsis thaliana GN=At1g80120
PE=1 SV=1
Length = 210
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 13/180 (7%)
Query: 14 EYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNY---DNRGSNEVYLMDLRGRV 70
E++ + S T+ SL G+G TV++ G +V+R+D+Y + R ++EV LMD GR
Sbjct: 10 EFIHGEERSLTVRKTSLFFAGDGFTVYDCKGSLVFRVDSYGGPNTRDTDEVVLMDAHGRC 69
Query: 71 LFTILRKVWLFGG-WKGYRGDNGDKLNKERPRFQVSKKGQITLLSSS----SNAETSCYK 125
L T+ RK W+GY G+ D ++P F V + I S + + + S Y
Sbjct: 70 LLTLRRKRPSLRRRWEGYLGERSDG---QKPIFGVRRSSIIGRNSVTVEVYGDYQCSEYL 126
Query: 126 LEA--GKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFIMALVTV 183
+E G +V+ VAE RRK +++ V+LG DV +L V+P D +F M LV V
Sbjct: 127 IEGSFGARNCTVVEAETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPGFDGAFAMGLVLV 186
>sp|A0MFL4|LOR17_ARATH Protein LURP-one-related 17 OS=Arabidopsis thaliana GN=At5g41590
PE=2 SV=2
Length = 221
Score = 80.5 bits (197), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 16/182 (8%)
Query: 22 SFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILR--KVW 79
+ T+W KSL++ G TV + NG+++YR+DNY E+ LMD G L + R K+
Sbjct: 38 TLTVWRKSLLVSCEGFTVIDSNGDLIYRVDNYARTRPEELILMDKDGNSLLLMHRTKKIT 97
Query: 80 LFGGWKGYRGDN--GDKLNKERPRFQVSKKGQITLLSSSSNAETSCYKLEAGK------- 130
L W Y ++ G+ + P + + K ++ +LS+ S+ Y K
Sbjct: 98 LVDSWGIYEANDTKGETKIPKCPTWYMRKNLKMNILSTKSDILAYVYSGSFDKKNSYIIK 157
Query: 131 -----SAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFIMALVTVYG 185
+ KIV V E +RK+ GV G DV LVV P D MALV +
Sbjct: 158 GSYRCKSCKIVHVPLNKTVVEIKRKEVRTKGVRFGSDVFDLVVNPGFDTGLAMALVLLLD 217
Query: 186 LM 187
M
Sbjct: 218 QM 219
>sp|Q9LVZ8|LOR12_ARATH Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810
PE=2 SV=1
Length = 220
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 93/177 (52%), Gaps = 12/177 (6%)
Query: 15 YVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNY--DNRGSNEVYLMDLRGRVLF 72
Y+ + + T+ SL G+G ++ G+I++R+D+Y D R ++E+ LMD G+ L
Sbjct: 25 YLYQEDKPLTVCKTSLFYTGDGFAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDATGKCLL 84
Query: 73 TILRK-VWLFGGWKGYRGDNGDKLNKERPRFQVSKK---GQITLLSSSSNAETSCYKLEA 128
T+ RK L W+G+ G+ + ++P F V + G+ T+ + Y ++
Sbjct: 85 TVKRKRPTLHQRWEGFLGERSEG---QKPIFSVRRSSIIGRCTMEVEVYDGTGEEYIIDG 141
Query: 129 --GKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFIMALVTV 183
+ + I D + VAE +RK +++ V+LG DV TL ++P D +F M LV V
Sbjct: 142 DFSQRSCLIYDTKKC-TVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAMGLVVV 197
>sp|Q9ZUF7|LOR6_ARATH Protein LURP-one-related 6 OS=Arabidopsis thaliana GN=At2g05910
PE=2 SV=1
Length = 191
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 27/184 (14%)
Query: 15 YVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGS-NEVYLMDLRGRVLFT 73
Y +S E + + V+ G G V + +IV++ID G+ E+ L D G L
Sbjct: 9 YCSSMEEVMVVRRRPHVVNGGGFVVTDYKEKIVFKIDGCGVLGTKGELVLRDSDGNDLLL 68
Query: 74 ILRK------VWLFGGWKGYRGDNGDKLNKERPRFQV--SKKGQITLLSS--SSNAETSC 123
I +K + + WKGY + D +P F + K ++ SS S +C
Sbjct: 69 IHKKGGVVQALSIHNKWKGY---SYDYQGSPKPVFTLRDPKHSCFSITSSIRISVGPGNC 125
Query: 124 YKLEAGKSAFKIVDC----SRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFIMA 179
Y + K F DC S+G+V+A+ + S D+ +V +P VD +F+
Sbjct: 126 Y-FDV-KGYFPDRDCSIVDSKGNVIAQVKEWIGSR-------DIYKVVTKPSVDKAFVFG 176
Query: 180 LVTV 183
++ V
Sbjct: 177 VIAV 180
>sp|Q9LQ36|LOR1_ARATH Protein LURP-one-related 1 OS=Arabidopsis thaliana GN=At1g33840
PE=2 SV=2
Length = 224
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 77/180 (42%), Gaps = 12/180 (6%)
Query: 13 AEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLF 72
+Y + I K L + + N G +++++ + + LMD G +
Sbjct: 30 PKYCSLHPVDLAIVRKVLKITDGNFVITNAEGNLLFKVKDPFFSLHEKRILMDGFGTKVL 89
Query: 73 TILRKVW-LFGGWKGYRGDNGDKLN-----KERPRFQVSKKGQITLLSSSSNAETSCYKL 126
T+ K+ + W +RG + ++++ K Q++ K + L+ + + Y+L
Sbjct: 90 TLKGKIMTMHDRWLVFRGGSTEEVDLLYTVKRSNMVQITTKLDV-FLADNIEQKKCDYRL 148
Query: 127 EA---GKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFIMALVTV 183
E S F V D++ R++ + VL G D L V P VD++FI +L+ +
Sbjct: 149 EGVWLETSCF--VYAGDSDIILAQMREKKTMQSVLFGKDNFCLTVNPNVDYAFIASLIVI 206
>sp|Q9SF24|LOR10_ARATH Protein LURP-one-related 10 OS=Arabidopsis thaliana GN=At3g11740
PE=2 SV=2
Length = 194
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 28 KSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILR-KVWLFGGWKG 86
K + + V + NG +++++ S++ L+D + T+ KV L W
Sbjct: 21 KVMTLTDGNFAVTDVNGNLLFKVKEPLFSISDKRILLDAYDTPILTLRENKVSLHDRWLV 80
Query: 87 YRGDNGDKLN-----KERPRFQVSKKGQITLLSSSSNAETSCYKLEAG---KSAFKIVDC 138
YRG + D+ + K Q+ K L+ + + + ++ +S +V
Sbjct: 81 YRGKSTDQSDLLYTLKRSSMIQIMKPKLDIFLAHNKEMKICDFHVKGSWIDRSC--VVYA 138
Query: 139 SRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFIMALVTV 183
+ D + K+ + +L+G ++ V P VD +FI++L+ +
Sbjct: 139 GKSDAIVAQMHKKHTAQSILIGKSNFSVTVYPNVDFAFIVSLIVI 183
>sp|Q9LZX1|LOR15_ARATH Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750
PE=1 SV=1
Length = 217
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 79/182 (43%), Gaps = 8/182 (4%)
Query: 9 IVEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRG 68
+V +Y I K + + + + NG +++++ ++ L+D G
Sbjct: 26 VVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSG 85
Query: 69 RVLFTILRK-VWLFGGWKGYRG---DNGDKLNKERPRFQVSKKGQITLLSSSSNAETSC- 123
+ T+ K V + W+ +RG D D L + + K ++ + + E C
Sbjct: 86 TPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCD 145
Query: 124 YKLEAG--KSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFIMALV 181
++++ + + + +VA+ RK + S V LG D ++ V P VD++FI +LV
Sbjct: 146 FRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQS-VFLGKDNFSVTVYPNVDYAFIASLV 204
Query: 182 TV 183
+
Sbjct: 205 VI 206
>sp|A0RMJ2|MOAA_CAMFF Cyclic pyranopterin monophosphate synthase OS=Campylobacter fetus
subsp. fetus (strain 82-40) GN=moaA PE=3 SV=1
Length = 322
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 95 LNKERPRFQVSKKGQITLLSSSSNAETSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSN 154
LNK++ +SKK I ++ S N+ +S ++LE G F I+D + D + R + S
Sbjct: 201 LNKDQILDIISKKYNIKEITKSPNSPSSLFELEDG-YKFGIIDPHKHDFCSTCNRLRLSA 259
Query: 155 SGVLL 159
G+L+
Sbjct: 260 EGLLI 264
>sp|A0MFH4|LOR16_ARATH Protein LURP-one-related 16 OS=Arabidopsis thaliana GN=At5g20640
PE=2 SV=2
Length = 215
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 78/189 (41%), Gaps = 29/189 (15%)
Query: 8 PIVEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLR 67
P+V +V S + ++ + +GC V G+++ R N N++ L+
Sbjct: 32 PMVNGGGFVVSNSKQVVVF------RVDGCGVLGTKGKLLLR-----NGDGNDLLLIRKM 80
Query: 68 GRVLFTILRKVWLFGGWKGYRGDN-------------GDKLNKERPRFQVSKKGQITLLS 114
G ++ + + W+G+ DN D + ++ G+ +S
Sbjct: 81 GGIVQAL---NMVHNKWEGFGYDNEGTERLVFTLKDPKDSCLVQNSSIKILVHGKPPKIS 137
Query: 115 SSSNAETSCYKLEAGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDH 174
S+ N K + A I+D S G +A+ R ++ V D+ ++V+P VD
Sbjct: 138 STRNNYVE-IKGSFAERACNIMD-SDGKAIAKVRIEKEMEEMVGNKKDLYHVIVKPNVDQ 195
Query: 175 SFIMALVTV 183
SFI+ L+ +
Sbjct: 196 SFIVGLIAI 204
>sp|Q972D2|NADB_SULTO L-aspartate oxidase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=nadB PE=1 SV=1
Length = 472
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 25 IWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRG--------SNEVYLMDLRGRVLFTILR 76
+++ + ++G G + NENGE + NYD RG S +Y+ L+G +F L
Sbjct: 222 VFLLTETLRGEGAQIINENGERF--LFNYDKRGELAPRDILSRAIYIEMLKGHKVFIDLS 279
Query: 77 KVWLF 81
K+ F
Sbjct: 280 KIEDF 284
>sp|Q9LSQ1|LOR13_ARATH Protein LURP-one-related 13 OS=Arabidopsis thaliana GN=At3g16900
PE=3 SV=1
Length = 185
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 81/199 (40%), Gaps = 32/199 (16%)
Query: 1 MAKVHP------LPIVEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYD 54
MAK P LP+V +E+V + TI G TV + G V+++
Sbjct: 1 MAKQDPTSSNTMLPLVG-SEFVRPQPLDLTI---------TGDTVKDATGNKVFKVKTPL 50
Query: 55 NRGSNEVYLMDLRGRVLFTILRKVWL-FGGWKGYRG-DNGDKLNKERPRFQVSKKGQI-T 111
N+ L+D + T+ KV W+ YRG D DK+ + V K ++
Sbjct: 51 FGLHNKRILVDPNDSPIVTMKMKVTSKHDRWQVYRGSDLDDKIFTVKRSSTVQLKTRVEV 110
Query: 112 LLSSSSNAETSCYKLEAG---KSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVV 168
L + E+SC G K A I ++A+ V G + L +
Sbjct: 111 FLKHNQTRESSCDFTIKGRFMKRACTIYVADSTKIIAQ----------VYEGHERLVATI 160
Query: 169 EPQVDHSFIMALVTVYGLM 187
P VD++FI+ L+ ++ L+
Sbjct: 161 YPNVDYAFIVTLIFIFDLI 179
>sp|P35136|SERA_BACSU D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis (strain
168) GN=serA PE=3 SV=3
Length = 525
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 130 KSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFI 177
K ++++C+RG ++ EA ++ +G + G + VEP VD+ +
Sbjct: 219 KKGVRLINCARGGIIDEAALLEALENGHVAGAALDVFEVEPPVDNKLV 266
>sp|A0Q0Y1|RIMM_CLONN Ribosome maturation factor RimM OS=Clostridium novyi (strain NT)
GN=rimM PE=3 SV=1
Length = 162
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 36 GCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKV 78
GCTV++EN + + ID + GSN+VY + +L ++ V
Sbjct: 100 GCTVYDENEKQLGNIDEIIHTGSNDVYWIKGPNELLIPAIKSV 142
>sp|O31740|RIMM_BACSU Ribosome maturation factor RimM OS=Bacillus subtilis (strain 168)
GN=rimM PE=3 SV=1
Length = 174
Score = 30.4 bits (67), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 36 GCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGR 69
GC VF E GE++ ++ G+N+V+++ +G+
Sbjct: 108 GCEVFTEEGELIGKVKEILTPGANDVWVIGRKGK 141
>sp|Q74MJ4|RL18_NANEQ 50S ribosomal protein L18P OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rpl18p PE=3 SV=1
Length = 195
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 21 ESFTIWMKSLVMQGNG---CTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRK 77
E T++ K L + +G V N I+ ++ YD +G RV+FTI
Sbjct: 16 EGKTVYRKRLKLLLSGKPRLVVRRFNSNILAQLVEYDPKGD----------RVIFTIHSN 65
Query: 78 VWLFGGWKGYRGD 90
V GWKG+RG+
Sbjct: 66 VLKKYGWKGHRGN 78
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,549,825
Number of Sequences: 539616
Number of extensions: 2682627
Number of successful extensions: 6337
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6308
Number of HSP's gapped (non-prelim): 25
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)