Query 042437
Match_columns 191
No_of_seqs 103 out of 466
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:10:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04525 Tub_2: Tubby C 2; In 100.0 1.9E-42 4.1E-47 277.4 18.3 170 9-183 2-187 (187)
2 COG4894 Uncharacterized conser 100.0 3.4E-37 7.3E-42 232.5 7.7 152 20-190 5-159 (159)
3 PF03803 Scramblase: Scramblas 99.6 5.2E-13 1.1E-17 109.2 18.3 164 14-188 16-218 (221)
4 COG4894 Uncharacterized conser 98.4 9.3E-07 2E-11 67.6 5.8 70 15-86 24-94 (159)
5 KOG0621 Phospholipid scramblas 97.5 0.0026 5.7E-08 54.5 12.6 149 34-187 98-277 (292)
6 PF04525 Tub_2: Tubby C 2; In 97.5 0.00038 8.2E-09 55.6 7.0 71 17-88 35-112 (187)
7 PF03803 Scramblase: Scramblas 96.6 0.0073 1.6E-07 49.2 6.5 82 20-109 86-178 (221)
8 TIGR03066 Gem_osc_para_1 Gemma 84.1 3.8 8.2E-05 30.3 5.6 73 2-76 25-110 (111)
9 PF09008 Head_binding: Head bi 73.5 13 0.00028 27.3 5.6 55 15-75 50-104 (114)
10 PF13860 FlgD_ig: FlgD Ig-like 73.2 7.9 0.00017 26.4 4.3 16 60-75 28-43 (81)
11 KOG0621 Phospholipid scramblas 62.8 29 0.00064 29.9 6.6 45 35-79 188-238 (292)
12 PRK12816 flgG flagellar basal 56.0 17 0.00036 30.7 3.9 43 30-73 95-138 (264)
13 KOG3950 Gamma/delta sarcoglyca 54.0 12 0.00025 31.6 2.5 22 58-79 138-159 (292)
14 PRK15393 NUDIX hydrolase YfcD; 53.1 36 0.00078 26.7 5.2 54 35-88 10-71 (180)
15 PF04790 Sarcoglycan_1: Sarcog 52.6 31 0.00068 29.2 5.0 22 57-78 116-138 (264)
16 COG5436 Predicted integral mem 52.1 53 0.0012 25.8 5.7 18 60-77 92-109 (182)
17 PRK12640 flgF flagellar basal 51.1 19 0.00042 30.0 3.5 43 30-73 80-123 (246)
18 PRK12691 flgG flagellar basal 50.5 30 0.00064 29.0 4.6 43 30-73 95-138 (262)
19 TIGR03784 marine_sortase sorta 48.4 30 0.00066 27.3 4.1 23 57-79 111-134 (174)
20 PF09000 Cytotoxic: Cytotoxic; 48.1 56 0.0012 22.9 4.8 51 23-77 17-69 (85)
21 PRK12818 flgG flagellar basal 47.7 27 0.0006 29.2 3.9 43 30-73 95-138 (256)
22 PRK12817 flgG flagellar basal 47.3 29 0.00062 29.1 4.0 43 30-73 91-134 (260)
23 PF02974 Inh: Protease inhibit 47.0 1E+02 0.0022 21.8 6.4 29 58-88 61-89 (99)
24 TIGR02488 flgG_G_neg flagellar 46.9 24 0.00053 29.5 3.5 43 30-73 93-136 (259)
25 PRK12694 flgG flagellar basal 46.3 27 0.00058 29.3 3.6 43 30-73 95-138 (260)
26 cd05828 Sortase_D_4 Sortase D 44.9 33 0.00072 25.3 3.6 32 57-88 64-96 (127)
27 cd06166 Sortase_D_5 Sortase D 44.7 37 0.0008 25.0 3.8 22 57-78 67-88 (126)
28 TIGR02150 IPP_isom_1 isopenten 44.4 36 0.00079 25.9 3.9 51 37-87 1-60 (158)
29 PF15529 Toxin_49: Putative to 44.3 24 0.00052 25.0 2.6 19 35-53 30-48 (89)
30 COG4998 Predicted endonuclease 43.5 43 0.00093 26.6 4.1 38 129-174 21-59 (209)
31 PRK12693 flgG flagellar basal 41.8 39 0.00085 28.2 4.0 43 30-73 95-138 (261)
32 PF08269 Cache_2: Cache domain 41.4 5.2 0.00011 27.8 -1.2 43 30-72 51-94 (95)
33 PRK06655 flgD flagellar basal 38.3 48 0.001 27.3 3.9 44 32-76 102-145 (225)
34 PRK00122 rimM 16S rRNA-process 37.5 1E+02 0.0022 24.0 5.5 7 67-73 114-120 (172)
35 PF12396 DUF3659: Protein of u 37.1 93 0.002 20.5 4.4 40 36-75 12-57 (64)
36 PHA00458 single-stranded DNA-b 36.6 24 0.00052 29.2 1.8 60 14-73 73-140 (233)
37 TIGR02273 16S_RimM 16S rRNA pr 34.9 97 0.0021 23.9 5.0 15 62-76 104-118 (165)
38 cd03676 Nudix_hydrolase_3 Memb 34.1 1.4E+02 0.003 23.1 5.8 55 34-88 4-70 (180)
39 PRK12692 flgG flagellar basal 34.0 47 0.001 28.0 3.3 42 30-72 95-137 (262)
40 PRK12641 flgF flagellar basal 33.0 56 0.0012 27.3 3.6 41 31-73 79-120 (252)
41 PRK14591 rimM 16S rRNA-process 31.8 1.3E+02 0.0028 23.4 5.3 8 65-72 112-119 (169)
42 PRK12813 flgD flagellar basal 31.8 85 0.0018 25.9 4.4 17 59-75 126-142 (223)
43 PRK13828 rimM 16S rRNA-process 31.7 1.4E+02 0.0031 23.0 5.4 16 37-52 88-103 (161)
44 smart00634 BID_1 Bacterial Ig- 31.6 1.3E+02 0.0028 20.6 4.8 14 62-75 56-69 (92)
45 PF12690 BsuPI: Intracellular 31.2 36 0.00078 23.4 1.8 15 36-50 27-41 (82)
46 COG4786 FlgG Flagellar basal b 31.0 58 0.0013 27.7 3.3 38 35-73 101-138 (265)
47 PRK12643 flgF flagellar basal 30.4 46 0.001 27.2 2.6 40 31-72 81-121 (209)
48 PF12098 DUF3574: Protein of u 29.9 39 0.00085 24.6 1.9 34 32-66 34-67 (104)
49 PF11141 DUF2914: Protein of u 29.3 88 0.0019 20.5 3.4 21 56-76 43-63 (66)
50 PRK14592 rimM 16S rRNA-process 29.1 1.6E+02 0.0035 22.7 5.4 13 38-50 101-113 (165)
51 PLN02552 isopentenyl-diphospha 29.1 1.1E+02 0.0024 25.6 4.7 54 35-88 23-90 (247)
52 PRK12690 flgF flagellar basal 28.5 70 0.0015 26.5 3.4 42 30-73 81-123 (238)
53 COG1021 EntE Peptide arylation 27.2 36 0.00078 31.1 1.5 51 36-86 345-396 (542)
54 COG4787 FlgF Flagellar basal b 26.5 64 0.0014 26.8 2.7 54 17-72 67-121 (251)
55 cd05830 Sortase_D_5 Sortase D 26.0 1.1E+02 0.0024 22.8 3.8 23 57-79 68-90 (137)
56 PF00384 Molybdopterin: Molybd 26.0 70 0.0015 28.0 3.1 44 141-188 141-185 (432)
57 PRK12812 flgD flagellar basal 25.8 2.5E+02 0.0053 23.8 6.2 45 32-76 116-160 (259)
58 PF08829 AlphaC_N: Alpha C pro 24.8 24 0.00053 28.0 0.0 31 36-66 92-122 (194)
59 PRK12819 flgG flagellar basal 24.5 1E+02 0.0023 25.7 3.8 38 35-73 99-136 (257)
60 PF11906 DUF3426: Protein of u 24.3 51 0.0011 24.7 1.7 31 43-73 65-103 (149)
61 PF02974 Inh: Protease inhibit 24.3 2.6E+02 0.0056 19.7 6.4 41 29-72 56-96 (99)
62 cd00004 Sortase Sortases are c 24.3 1.3E+02 0.0028 21.9 3.9 23 57-79 67-89 (128)
63 PRK05842 flgD flagellar basal 24.1 1.3E+02 0.0028 26.0 4.2 18 58-75 167-184 (295)
64 cd08072 MPN_archaeal Mov34/MPN 23.9 1.5E+02 0.0033 21.5 4.1 41 5-47 68-112 (117)
65 cd02769 MopB_DMSOR-BSOR-TMAOR 23.9 53 0.0011 30.9 2.0 25 162-186 226-251 (609)
66 PRK06655 flgD flagellar basal 23.8 2.9E+02 0.0064 22.7 6.2 18 36-53 129-146 (225)
67 PRK10523 lipoprotein involved 23.4 1.3E+02 0.0029 25.0 4.1 36 30-71 91-127 (234)
68 PF06891 P2_Phage_GpR: P2 phag 22.9 2.8E+02 0.0061 20.7 5.5 24 160-184 49-76 (135)
69 PF05593 RHS_repeat: RHS Repea 22.9 1.6E+02 0.0035 16.7 4.2 30 40-72 1-30 (38)
70 PF07680 DoxA: TQO small subun 22.8 73 0.0016 24.2 2.2 31 49-79 37-69 (133)
71 PF06903 VirK: VirK protein; 22.1 3.1E+02 0.0068 19.8 5.7 30 23-53 49-79 (100)
72 cd06165 Sortase_A_1 Sortase A 22.0 1.4E+02 0.003 21.8 3.6 23 57-79 66-88 (127)
73 PF04170 NlpE: NlpE N-terminal 21.7 1.8E+02 0.0039 19.9 4.0 12 16-27 10-21 (87)
74 PRK14590 rimM 16S rRNA-process 21.6 2.7E+02 0.0059 21.7 5.4 14 62-75 121-134 (171)
75 PF13511 DUF4124: Domain of un 21.3 76 0.0016 19.9 1.8 16 36-51 15-30 (60)
76 PRK12634 flgD flagellar basal 21.0 2.1E+02 0.0045 23.5 4.8 19 58-76 123-141 (221)
77 PF06357 Omega-toxin: Omega-at 20.4 91 0.002 18.1 1.8 11 41-51 27-37 (37)
78 PF11191 DUF2782: Protein of u 20.2 1.2E+02 0.0025 21.8 2.8 31 58-88 70-104 (105)
No 1
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=100.00 E-value=1.9e-42 Score=277.35 Aligned_cols=170 Identities=36% Similarity=0.552 Sum_probs=104.2
Q ss_pred CCCccccccCcceEEEEEEeeeeEeCCCeEEEeCCCCEEEEEEe-cCCCCCceEEEEcCCCCeEEEEEeeee-ecceeEE
Q 042437 9 IVEVAEYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDN-YDNRGSNEVYLMDLRGRVLFTILRKVW-LFGGWKG 86 (191)
Q Consensus 9 ~~~~~~~~~~~~~~l~vk~k~~s~~~~~f~I~D~~G~~vf~V~g-~~~s~~~k~~l~D~~G~~L~~i~~k~~-~~~~~~v 86 (191)
+...++||+++|++|+||+|.+++++|+|+|+|++|+++|+|+| +.+++++++.|+|++|+||++|++|.+ ++++|++
T Consensus 2 ~vv~~~~~~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~~l~~~w~i 81 (187)
T PF04525_consen 2 VVVDAQYCSPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRKLFSLRPTWEI 81 (187)
T ss_dssp -SS-GGGB-SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE--------EEEE
T ss_pred cEECHHHcCCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEeeecccceEEEE
Confidence 35667999999999999999999999999999999999999999 899999999999999999999999999 9999999
Q ss_pred EecCCCCCCCCCCceEEEEeceeE------EEe-cCCC-----CCCceeEEE-e-cCCceeEEEeCCCCeEEEEEEeeec
Q 042437 87 YRGDNGDKLNKERPRFQVSKKGQI------TLL-SSSS-----NAETSCYKL-E-AGKSAFKIVDCSRGDVVAEARRKQS 152 (191)
Q Consensus 87 ~~~~~g~~~~~~~~~f~vkk~~~~------~~~-~~~~-----~~~~~~~~v-G-~~~~~~~I~~~~~g~~VA~V~rk~~ 152 (191)
|+ |++.+..+++|+||+++.+ .+| .++. ..+.++|+| | |++++|+|++. +|++||+|+||+.
T Consensus 82 ~~---~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~-~g~~VA~i~rk~~ 157 (187)
T PF04525_consen 82 YR---GGGSEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDS-GGRVVAEISRKYS 157 (187)
T ss_dssp EE---TT---GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT--EEEEC-C--EEEEEEE---
T ss_pred EE---CCCCccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEc-CCCEEEEEecccc
Confidence 99 4433345689999999422 123 3232 357789999 9 99999999974 6899999998888
Q ss_pred cCcceeeeeeeEEEEEeCCCCHHHHHHHHHH
Q 042437 153 SNSGVLLGDDVLTLVVEPQVDHSFIMALVTV 183 (191)
Q Consensus 153 ~~~~~~~~~dtY~l~V~pgvD~ali~alvi~ 183 (191)
. +..+.|+|+|.|+|+||+|++|++|||||
T Consensus 158 ~-k~~~~~~dty~l~V~pg~D~~lv~alvvi 187 (187)
T PF04525_consen 158 S-KKWFSGRDTYTLTVAPGVDQALVVALVVI 187 (187)
T ss_dssp --------B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred e-eeEEecCcEEEEEEcCCCCHHHheeEEeC
Confidence 5 78888999999999999999999999987
No 2
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.4e-37 Score=232.54 Aligned_cols=152 Identities=19% Similarity=0.274 Sum_probs=141.8
Q ss_pred ceEEEEEEeeeeEeCCCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEEEEeeee-ecceeEEEecCCCCCCCCC
Q 042437 20 RESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKVW-LFGGWKGYRGDNGDKLNKE 98 (191)
Q Consensus 20 ~~~l~vk~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~i~~k~~-~~~~~~v~~~~~g~~~~~~ 98 (191)
..+|.|+||++++ ||+|.|+|.+|+.+|+|+|+.+++++.+.+.|++|.+|.+|++|++ ++|+|+|-. |+ +
T Consensus 5 ~~tl~mkQk~~~~-gd~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d---~~----g 76 (159)
T COG4894 5 MITLFMKQKMFSF-GDAFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLLSLLPRYEISD---GG----G 76 (159)
T ss_pred hHhHhhhhhhhhc-ccceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHhhccceeEEEc---CC----C
Confidence 4678999999999 5999999999999999999999999999999999999999999999 999999988 33 3
Q ss_pred CceEEEEeceeEEEecCCCCCCceeEEE-e-cCCceeEEEeCCCCeEEEEEEeeeccCcceeeeeeeEEEEEeCCCCHHH
Q 042437 99 RPRFQVSKKGQITLLSSSSNAETSCYKL-E-AGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSF 176 (191)
Q Consensus 99 ~~~f~vkk~~~~~~~~~~~~~~~~~~~v-G-~~~~~~~I~~~~~g~~VA~V~rk~~~~~~~~~~~dtY~l~V~pgvD~al 176 (191)
..|.++|+++| ++.++..++.+|++ | +|+.+|++.++ ++++|+|+|||+. |+|||.|+|+|+.|.++
T Consensus 77 -~~~~vrKK~tf--~Rdk~e~d~~~~eihGNi~d~efkl~dg--~~~~aeVsKkwf~------~rdTY~l~vapde~a~l 145 (159)
T COG4894 77 -TVCEVRKKVTF--SRDKFEIDGLNWEIHGNIWDDEFKLTDG--ENVRAEVSKKWFS------WRDTYHLQVAPDEDALL 145 (159)
T ss_pred -CEEEEEEEEEE--EeeeEEEcCCCeEEecceeceEEEEecC--CceehhheeeeEe------ccceEEEEEcCchhhHH
Confidence 49999999998 78888888888999 9 99999999986 7799999999998 99999999999999999
Q ss_pred HHHHHHHHHhhhcc
Q 042437 177 IMALVTVYGLMRHR 190 (191)
Q Consensus 177 i~alvi~lD~i~~~ 190 (191)
|+++|||||++.++
T Consensus 146 ii~i~VaLD~v~~~ 159 (159)
T COG4894 146 IIAIAVALDMVLYN 159 (159)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999763
No 3
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=99.56 E-value=5.2e-13 Score=109.21 Aligned_cols=164 Identities=15% Similarity=0.156 Sum_probs=121.8
Q ss_pred ccccCcceEEEEEEeeeeE-------eCCCeEEEeCCCCEEEEEEecCC---------CCCceEEEEcCCCCeEEEEEee
Q 042437 14 EYVTSKRESFTIWMKSLVM-------QGNGCTVFNENGEIVYRIDNYDN---------RGSNEVYLMDLRGRVLFTILRK 77 (191)
Q Consensus 14 ~~~~~~~~~l~vk~k~~s~-------~~~~f~I~D~~G~~vf~V~g~~~---------s~~~k~~l~D~~G~~L~~i~~k 77 (191)
++-..-+. +.|+|+.-.+ ..+.|.|+|.+|+.+|.+....- ...-++.|+|+.|++++++++.
T Consensus 16 e~L~~~~~-l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp 94 (221)
T PF03803_consen 16 EYLAGLDQ-LLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERP 94 (221)
T ss_pred HHHhCCCE-EEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcC
Confidence 45444444 4577777542 24799999999999999865521 1244678999999999999987
Q ss_pred ee-ec------ceeEEEecCCCCCCCCCCceEEEEeceeEEEecCCCC----CCceeEEE-e--c-----CCceeEEEeC
Q 042437 78 VW-LF------GGWKGYRGDNGDKLNKERPRFQVSKKGQITLLSSSSN----AETSCYKL-E--A-----GKSAFKIVDC 138 (191)
Q Consensus 78 ~~-~~------~~~~v~~~~~g~~~~~~~~~f~vkk~~~~~~~~~~~~----~~~~~~~v-G--~-----~~~~~~I~~~ 138 (191)
.- .. .+.+|+.+ .++++.+|++++++ +.+++. .+..-+.| | + .+.+|.|++.
T Consensus 95 ~~c~~C~~~~~~~~~V~~p-------~g~~iG~I~q~~~~--~~~~f~I~d~~~~~~~~I~gp~~~~~~~~~~~F~I~~~ 165 (221)
T PF03803_consen 95 FKCCSCCPCCLQEMEVESP-------PGNLIGSIRQPFSC--CRPNFDIFDANGNPIFTIKGPCCCCSCCCDWEFEIKDP 165 (221)
T ss_pred CcceecccccceeEEEecC-------CCcEEEEEEEcCcc--cceEEEEEECCCceEEEEeCCcceeccccceeeeeecc
Confidence 53 33 56666553 46799999998865 444432 24556778 7 3 5789999987
Q ss_pred CCCeEEEEEEeeeccC-cceeeeeeeEEEEEeCCCCH---HHHHHHHHHHHhhh
Q 042437 139 SRGDVVAEARRKQSSN-SGVLLGDDVLTLVVEPQVDH---SFIMALVTVYGLMR 188 (191)
Q Consensus 139 ~~g~~VA~V~rk~~~~-~~~~~~~dtY~l~V~pgvD~---ali~alvi~lD~i~ 188 (191)
+|+.||+|+|+|... ...+...|.|.|+..+..|. |+++|.++.||.+.
T Consensus 166 -~~~~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~ 218 (221)
T PF03803_consen 166 -NGQEVGSITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYMY 218 (221)
T ss_pred -cCcEEEEEEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhhh
Confidence 579999999999853 33455789999999999876 69999999999875
No 4
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=9.3e-07 Score=67.58 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=63.9
Q ss_pred cccCcceEEEEEEeeeeEeCCCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEEEEeeee-ecceeEE
Q 042437 15 YVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKVW-LFGGWKG 86 (191)
Q Consensus 15 ~~~~~~~~l~vk~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~i~~k~~-~~~~~~v 86 (191)
|=...+.++.|.-+.++. ||.|+|+|+.|.+++.++.+.+++..+..|-|++|+ ++.+++|.. +++.|++
T Consensus 24 ~d~dgE~af~VeGs~f~i-~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~-~~~vrKK~tf~Rdk~e~ 94 (159)
T COG4894 24 YDRDGEEAFKVEGSFFSI-GDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT-VCEVRKKVTFSRDKFEI 94 (159)
T ss_pred ECCCCcEEEEEeeeEEee-CceEEEEecCCCChHHHHHHHhhccceeEEEcCCCC-EEEEEEEEEEEeeeEEE
Confidence 345779999999988998 689999999999999999999999999999999999 888888887 8999987
No 5
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=97.51 E-value=0.0026 Score=54.45 Aligned_cols=149 Identities=14% Similarity=0.081 Sum_probs=94.9
Q ss_pred CCCeEEEeCCCCEEEEEEecC--C-------CCCceEEEEcCCCCeEEEEEeeee-ecc------eeEEEecCCCCCCCC
Q 042437 34 GNGCTVFNENGEIVYRIDNYD--N-------RGSNEVYLMDLRGRVLFTILRKVW-LFG------GWKGYRGDNGDKLNK 97 (191)
Q Consensus 34 ~~~f~I~D~~G~~vf~V~g~~--~-------s~~~k~~l~D~~G~~L~~i~~k~~-~~~------~~~v~~~~~g~~~~~ 97 (191)
.+.|.|.|.+|+.+|.+-... + ...-...++|.-|++++++++... ... ..++-. +...
T Consensus 98 ~NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~~c~~~~~~~~~v-----~~p~ 172 (292)
T KOG0621|consen 98 ANRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSSACALCLAQEIEI-----QSPP 172 (292)
T ss_pred CcEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEeccccccccccccccccEEEE-----EcCC
Confidence 388999999999999653221 1 235678899999999999999875 332 111111 1112
Q ss_pred CCceEEEEecee-----EEEecCCCC----CCceeEEE-e-cCCceeEEEeCCCCeEEEEEEeeeccC-cceeeeeeeEE
Q 042437 98 ERPRFQVSKKGQ-----ITLLSSSSN----AETSCYKL-E-AGKSAFKIVDCSRGDVVAEARRKQSSN-SGVLLGDDVLT 165 (191)
Q Consensus 98 ~~~~f~vkk~~~-----~~~~~~~~~----~~~~~~~v-G-~~~~~~~I~~~~~g~~VA~V~rk~~~~-~~~~~~~dtY~ 165 (191)
...+-+|...+. +.+.....+ .+++.... + +-+..+.+...++|..|++|.|+|... .+.+-+.|+|.
T Consensus 173 ~~~lG~v~q~~~~~~~~f~i~~~~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE~fTDad~f~ 252 (292)
T KOG0621|consen 173 MGLLGKVLQTWGCVNPNFHLWDRDGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVREAFTDADTFV 252 (292)
T ss_pred CceEEEEEEeeccccceEEEEcccceeEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhhhheeccceee
Confidence 334444444331 111221111 24454445 5 667777777665789999999999853 56667889999
Q ss_pred EEEeCCCCH---HHHHHHHHHHHhh
Q 042437 166 LVVEPQVDH---SFIMALVTVYGLM 187 (191)
Q Consensus 166 l~V~pgvD~---ali~alvi~lD~i 187 (191)
|...-..|. ++++|.+.-||.+
T Consensus 253 v~FPldLdvk~kavllga~flID~~ 277 (292)
T KOG0621|consen 253 VHFPLDLDVKLKALLLGSTFLIDYM 277 (292)
T ss_pred EecCCcCCHHHHhhhhhheeeEEEE
Confidence 998877775 5777777777644
No 6
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=97.50 E-value=0.00038 Score=55.59 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=43.2
Q ss_pred cCcceEEEEEE-eeeeEeCCCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCC----eEEEEEeee-e-ecceeEEEe
Q 042437 17 TSKRESFTIWM-KSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGR----VLFTILRKV-W-LFGGWKGYR 88 (191)
Q Consensus 17 ~~~~~~l~vk~-k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~----~L~~i~~k~-~-~~~~~~v~~ 88 (191)
.+....|+|+. +.+++. +...++|.+|+++++++.+.+++.++..++++++. ++++|+++. + .++...+|.
T Consensus 35 ~~G~~vf~V~g~~~~s~~-~~~~l~D~~G~~L~~i~~k~~~l~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~ 112 (187)
T PF04525_consen 35 ENGNVVFRVDGGKFFSIG-KKRTLMDASGNPLFTIRRKLFSLRPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFL 112 (187)
T ss_dssp TTS-EEEEEE--SCTTBT-TEEEEE-TTS-EEEEEE--------EEEEEETT---GGGEEEEEE----------EEEEE
T ss_pred CCCCEEEEEEEecccCCC-CEEEEECCCCCEEEEEEeeecccceEEEEEECCCCccCceEEEEEEecccCCCcceeEEE
Confidence 35678999999 788884 79999999999999999999999999999999998 599999993 3 566666666
No 7
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=96.55 E-value=0.0073 Score=49.17 Aligned_cols=82 Identities=17% Similarity=0.089 Sum_probs=57.0
Q ss_pred ceEEEEEEeeeeEeC------CCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEEEEeeee-----ecceeEEEe
Q 042437 20 RESFTIWMKSLVMQG------NGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKVW-----LFGGWKGYR 88 (191)
Q Consensus 20 ~~~l~vk~k~~s~~~------~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~i~~k~~-----~~~~~~v~~ 88 (191)
...++++ |.+.+.. ...+|.+.+|+.+.+|......++.++.|+|++|++++.|+.... ..-.|+|+.
T Consensus 86 ~~vl~i~-Rp~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~~~~~~~I~gp~~~~~~~~~~~F~I~~ 164 (221)
T PF03803_consen 86 REVLTIE-RPFKCCSCCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDANGNPIFTIKGPCCCCSCCCDWEFEIKD 164 (221)
T ss_pred CEEEEEE-cCCcceecccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECCCceEEEEeCCcceeccccceeeeeec
Confidence 4456665 4455432 567788888999988888766678888899999988888877643 233455554
Q ss_pred cCCCCCCCCCCceEEEEecee
Q 042437 89 GDNGDKLNKERPRFQVSKKGQ 109 (191)
Q Consensus 89 ~~~g~~~~~~~~~f~vkk~~~ 109 (191)
. +++.+.+|+|+|.
T Consensus 165 ~-------~~~~vg~I~k~w~ 178 (221)
T PF03803_consen 165 P-------NGQEVGSITKKWS 178 (221)
T ss_pred c-------cCcEEEEEEEecC
Confidence 2 2468888888874
No 8
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=84.10 E-value=3.8 Score=30.26 Aligned_cols=73 Identities=12% Similarity=0.035 Sum_probs=41.1
Q ss_pred ccccCCCCCCcc--ccccCcceEEEEEEeee-eEeCCCeEEEeCCCCEEEEEEe--cC--------CCCCceEEEEcCCC
Q 042437 2 AKVHPLPIVEVA--EYVTSKRESFTIWMKSL-VMQGNGCTVFNENGEIVYRIDN--YD--------NRGSNEVYLMDLRG 68 (191)
Q Consensus 2 ~~~~~~~~~~~~--~~~~~~~~~l~vk~k~~-s~~~~~f~I~D~~G~~vf~V~g--~~--------~s~~~k~~l~D~~G 68 (191)
++||++....++ +|-......+++..+.- .--.+.|++.+. .+-+++.. .- .--.+++.+.|++|
T Consensus 25 GkW~~~~~~~~~~leF~~dGKL~v~~gnng~~~~~~Gty~L~G~--kLtL~~~p~g~t~k~~Vtv~~l~~~~Lvl~d~dg 102 (111)
T TIGR03066 25 GKWETSKTKDDVVIEFAKDGKLVVTIGEKGKEVKADGTYKLDGN--KLTLTLKAGGKEKKETLTVKKLTDDELVGKDPDG 102 (111)
T ss_pred EEEEEeeeCCceEEEEcCCCeEEEecCCCCcEeccCceEEEECC--EEEEEEcCCCccccceEEEEEecCCeEEEEcCCC
Confidence 589996555555 67777777777766542 111134443322 22222111 11 11367889999999
Q ss_pred CeEEEEEe
Q 042437 69 RVLFTILR 76 (191)
Q Consensus 69 ~~L~~i~~ 76 (191)
+++...|-
T Consensus 103 ~~~~~~rv 110 (111)
T TIGR03066 103 KKDTLKRV 110 (111)
T ss_pred CEeEEEEc
Confidence 98876553
No 9
>PF09008 Head_binding: Head binding; InterPro: IPR009093 This entry represents the N-terminal domain of the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tailspike protein of Salmonella bacteriophage P22 is a viral adhesion protein that mediates attachment of the viral protein to host cell-surface lipopolysaccharide. The tailspike protein displays both receptor binding and destroying properties, inactivating the receptor by endoglycosidase activity. The N-terminal, head-binding domain mediates the non-covalent attachment of the six homotrimeric tailspike molecules to the DNA injection apparatus []. The N-terminal domain of the P22 tailspike protein shows significant sequence similarity to the N-terminal domain of the Shigella phage Sf6 tailspike protein [].; GO: 0009405 pathogenesis; PDB: 2XC1_C 1LKT_D 2VFQ_A 2VFO_A 2VFN_A 2VFP_A 2VKY_B 2VFM_A 2VNL_A 2VBK_A ....
Probab=73.54 E-value=13 Score=27.33 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=31.6
Q ss_pred cccCcceEEEEEEeeeeEeCCCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEEEE
Q 042437 15 YVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTIL 75 (191)
Q Consensus 15 ~~~~~~~~l~vk~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~i~ 75 (191)
|..++.-.+..-.+.+.+..++|.+++ |+.+.-|... ++.+.++|++|..+|.+-
T Consensus 50 yl~ne~G~~~~i~QPi~iN~gg~~~y~--gq~a~~vt~~----~hSMAv~d~~g~q~Fy~p 104 (114)
T PF09008_consen 50 YLENEDGSHVQIAQPIIINKGGFPVYN--GQIAKFVTVP----GHSMAVYDANGQQQFYFP 104 (114)
T ss_dssp EEE-TTS-EEEE-SSEEE-TTS-EEET--TEE--EEESS----SEEEEEE-TTS-EEEEES
T ss_pred EEEcCCCCEeeccCCEEEccCCceEEc--cceeEEEEcc----CceEEEEeCCCcEEEeec
Confidence 444443333344567778778999995 4566666555 456899999999999763
No 10
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=73.22 E-value=7.9 Score=26.36 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=8.3
Q ss_pred eEEEEcCCCCeEEEEE
Q 042437 60 EVYLMDLRGRVLFTIL 75 (191)
Q Consensus 60 k~~l~D~~G~~L~~i~ 75 (191)
++.|+|++|+.|.++.
T Consensus 28 ~v~I~d~~G~~V~t~~ 43 (81)
T PF13860_consen 28 TVTIYDSNGQVVRTIS 43 (81)
T ss_dssp EEEEEETTS-EEEEEE
T ss_pred EEEEEcCCCCEEEEEE
Confidence 5555555555555543
No 11
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=62.81 E-value=29 Score=29.87 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=34.6
Q ss_pred CCeEEEeCCCCEEEEEEecCC------CCCceEEEEcCCCCeEEEEEeeee
Q 042437 35 NGCTVFNENGEIVYRIDNYDN------RGSNEVYLMDLRGRVLFTILRKVW 79 (191)
Q Consensus 35 ~~f~I~D~~G~~vf~V~g~~~------s~~~k~~l~D~~G~~L~~i~~k~~ 79 (191)
-.|.|.|..++.+|+|+|..+ +......++..+|..+..|-++..
T Consensus 188 ~~f~i~~~~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~ 238 (292)
T KOG0621|consen 188 PNFHLWDRDGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWA 238 (292)
T ss_pred ceEEEEcccceeEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeeccc
Confidence 578999988999999999822 335556777778888888888764
No 12
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=56.03 E-value=17 Score=30.68 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=31.9
Q ss_pred eeEeCCC-eEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEE
Q 042437 30 LVMQGNG-CTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFT 73 (191)
Q Consensus 30 ~s~~~~~-f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~ 73 (191)
+.+.|++ |.|.+.+|..+|+=+|. |++...-.|.+++|.+|+.
T Consensus 95 lAI~G~GFF~V~~~~G~~~YTR~G~-F~~d~~G~Lvt~~G~~vl~ 138 (264)
T PRK12816 95 VAIEGEGFFKILMPDGTYAYTRDGS-FKIDANGQLVTSNGYRLLP 138 (264)
T ss_pred EEECCCcEEEEEcCCCCeEEeeCCC-eeECCCCCEECCCCCEecc
Confidence 4455654 67878889888998887 4555555689999999984
No 13
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=53.98 E-value=12 Score=31.59 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=15.4
Q ss_pred CceEEEEcCCCCeEEEEEeeee
Q 042437 58 SNEVYLMDLRGRVLFTILRKVW 79 (191)
Q Consensus 58 ~~k~~l~D~~G~~L~~i~~k~~ 79 (191)
.+++.+.|.+|++||+..+.-.
T Consensus 138 ~~~Fev~~~dgk~LFsad~dEv 159 (292)
T KOG3950|consen 138 CKRFEVNDVDGKLLFSADEDEV 159 (292)
T ss_pred hceeEEecCCCcEEEEecccee
Confidence 5667777777777777766554
No 14
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=53.09 E-value=36 Score=26.68 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=34.8
Q ss_pred CCeEEEeCCCCEEEEEEec------CCCCCceEEEEcCCCCeEEEEEeeee--ecceeEEEe
Q 042437 35 NGCTVFNENGEIVYRIDNY------DNRGSNEVYLMDLRGRVLFTILRKVW--LFGGWKGYR 88 (191)
Q Consensus 35 ~~f~I~D~~G~~vf~V~g~------~~s~~~k~~l~D~~G~~L~~i~~k~~--~~~~~~v~~ 88 (191)
.-+.|+|++|+++-.+.-. .....--..|+|.+|+.|+.=|...- +.+.|+..-
T Consensus 10 e~~~~~d~~~~~~g~~~~~~~~~~~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~p 71 (180)
T PRK15393 10 EWVDIVNENNEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATA 71 (180)
T ss_pred eEEEEECCCCCEeeEEEHHHHhhCCCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccC
Confidence 4589999999999987211 22334567778999988874332222 345566555
No 15
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=52.63 E-value=31 Score=29.21 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=13.6
Q ss_pred CCceEEEEcC-CCCeEEEEEeee
Q 042437 57 GSNEVYLMDL-RGRVLFTILRKV 78 (191)
Q Consensus 57 ~~~k~~l~D~-~G~~L~~i~~k~ 78 (191)
..+.+.|.|+ +|++||+-.+..
T Consensus 116 ~~~~F~V~d~~~g~~lFsad~~~ 138 (264)
T PF04790_consen 116 QSNRFEVKDPRDGKTLFSADRPE 138 (264)
T ss_pred ecCeEEEEcCCCCceEEEecCCc
Confidence 3556666676 667766665543
No 16
>COG5436 Predicted integral membrane protein [Function unknown]
Probab=52.08 E-value=53 Score=25.85 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=8.9
Q ss_pred eEEEEcCCCCeEEEEEee
Q 042437 60 EVYLMDLRGRVLFTILRK 77 (191)
Q Consensus 60 k~~l~D~~G~~L~~i~~k 77 (191)
.+.++|++|+.+++|+.+
T Consensus 92 Svsiyds~~nn~fS~ND~ 109 (182)
T COG5436 92 SVSIYDSNGNNFFSINDR 109 (182)
T ss_pred EEEEEcCCCCceEEeccc
Confidence 344555555555555443
No 17
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=51.12 E-value=19 Score=30.04 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=29.8
Q ss_pred eeEeCCC-eEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEE
Q 042437 30 LVMQGNG-CTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFT 73 (191)
Q Consensus 30 ~s~~~~~-f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~ 73 (191)
+.+.|++ |.|.+.+|+..|+=+|. |.+...-.|.+++|.+|+.
T Consensus 80 lAI~G~GFF~V~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vlg 123 (246)
T PRK12640 80 VALQGDGWLAVQAPDGSEAYTRNGS-LQVDANGQLRTANGLPVLG 123 (246)
T ss_pred EEECCCcEEEEEcCCCCEEEEeCCC-eeECCCCCEEcCCCCCccC
Confidence 4445544 77777888888887777 4554555578888888774
No 18
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=50.49 E-value=30 Score=29.01 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=31.2
Q ss_pred eeEeCCC-eEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEE
Q 042437 30 LVMQGNG-CTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFT 73 (191)
Q Consensus 30 ~s~~~~~-f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~ 73 (191)
+.+.|++ |.|.+.+|..+|+=+|. |.+...-.|.+++|.+|+.
T Consensus 95 lAI~G~GfF~V~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vl~ 138 (262)
T PRK12691 95 LAIQGRGYFQIQLPDGETAYTRAGA-FNRSADGQIVTSDGYPVQP 138 (262)
T ss_pred EEEcCCcEEEEEcCCCCEEEeeCCC-eeECCCCCEECCCCCEeEe
Confidence 4455644 67777888888998887 4555555688999999984
No 19
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=48.45 E-value=30 Score=27.33 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=15.6
Q ss_pred CCceEEEEcCCCCeE-EEEEeeee
Q 042437 57 GSNEVYLMDLRGRVL-FTILRKVW 79 (191)
Q Consensus 57 ~~~k~~l~D~~G~~L-~~i~~k~~ 79 (191)
.++++.|.+.+|+.. +.+.....
T Consensus 111 ~GD~I~v~~~~g~~~~Y~V~~~~i 134 (174)
T TIGR03784 111 PGDVIRLQTPDGQWQSYQVTATRV 134 (174)
T ss_pred CCCEEEEEECCCeEEEEEEeEEEE
Confidence 477777777777754 66666554
No 20
>PF09000 Cytotoxic: Cytotoxic; InterPro: IPR009105 Colicins are plasmid-encoded protein antibiotics, or bacteriocins, produced by strains of Escherichia coli that kill closely related bacteria. Colicins are classified according to the cell-surface receptor they bind to, colicin E3 binding to the BtuB receptor involved in vitamin B12 uptake. The lethal action of colicin E3 arises from its ability to inactivate the ribosome by site-specific RNase cleavage of the 16S ribosomal RNA, which is carried out by the catalytic, or ribonuclease domain. Colicin E3 is comprised of three domains, each domain being involved in a different stage of infection: receptor binding, translocation and cytotoxicity. Colicin E3 is a Y-shaped molecule with the receptor-binding middle domain forming the stalk, the N-terminal translocation domain forming the two globular heads (IPR003058 from INTERPRO), and the C-terminal catalytic domain forming the two globular arms. To neutralise the toxic effects of colicin E3, the host cell produces an immunity protein, which binds to the C-terminal end of the ribonuclease domain and effectively suppresses its activity. This entry represents the ribonuclease domain (also called catalytic or cytotoxic domain) found in various colicins. This domain confers cytotoxic activity to proteins, enabling the formation of nucleolytic breaks in 16S ribosomal RNA. The structure of the domain reveals a highly twisted central beta-sheet elaborated with a short N-terminal alpha-helix [, ]. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0043022 ribosome binding, 0009405 pathogenesis; PDB: 2B5U_C 1JCH_A 1E44_B 2XFZ_Y.
Probab=48.08 E-value=56 Score=22.92 Aligned_cols=51 Identities=24% Similarity=0.235 Sum_probs=31.4
Q ss_pred EEEEEeeeeEeCCC--eEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEEEEee
Q 042437 23 FTIWMKSLVMQGNG--CTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRK 77 (191)
Q Consensus 23 l~vk~k~~s~~~~~--f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~i~~k 77 (191)
-..++|.-...|+. -.=+|..|..+|.-|.. +.++.++|..|+.|-.+...
T Consensus 17 ~~~k~ktp~~gg~~~r~rw~~~kG~kiYewDsq----HG~lEvy~~~GkHLGe~Dp~ 69 (85)
T PF09000_consen 17 KKAKPKTPVQGGGGKRKRWKDKKGRKIYEWDSQ----HGELEVYNKRGKHLGEFDPK 69 (85)
T ss_dssp EEE---SB-SSSSSB--EEEETTTTEEEEEETT----TTEEEEEETT-BEEEEE-TT
T ss_pred hhccccCccccCCccccceEcCCCCEEEEEcCC----CCeEEEEcCCCcCcccccCC
Confidence 44555544443322 23357889989988876 78999999999999886544
No 21
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=47.69 E-value=27 Score=29.22 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=28.4
Q ss_pred eeEeCCC-eEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEE
Q 042437 30 LVMQGNG-CTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFT 73 (191)
Q Consensus 30 ~s~~~~~-f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~ 73 (191)
+.+.|++ |.|.+.+|+..|+=+|.+ .+...-.|.+++|.+|+-
T Consensus 95 lAI~G~GFF~V~~~~G~~~YTR~G~F-~~d~~G~Lvt~~G~~vlg 138 (256)
T PRK12818 95 FAIQGRGFFTVERNAGNNYYTRDGHF-HVDTQGYLVNDSGYYVLG 138 (256)
T ss_pred EEECCCceEEEEcCCCCeEEeeCCCe-eECCCCCEEcCCCCEEec
Confidence 4445544 777777888778877774 443444577888887773
No 22
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=47.30 E-value=29 Score=29.11 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=29.9
Q ss_pred eeEeCCC-eEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEE
Q 042437 30 LVMQGNG-CTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFT 73 (191)
Q Consensus 30 ~s~~~~~-f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~ 73 (191)
+.+.|++ |.|.+.+|..+|+=+|.+ .+...-.|.+++|.+|+.
T Consensus 91 ~Ai~G~GfF~V~~~~G~~~yTR~G~F-~~d~~G~Lvt~~G~~vl~ 134 (260)
T PRK12817 91 LAIDGEGFFRVIMADGTYAYTRAGNF-NIDSNGMLVDDNGNRLEI 134 (260)
T ss_pred EEECCCcEEEEEcCCCCeEEEeCCce-eECCCCCEEcCCCCEEEe
Confidence 4445544 677778888888888874 444444588888888884
No 23
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=46.97 E-value=1e+02 Score=21.83 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCeEEEEEeeeeecceeEEEe
Q 042437 58 SNEVYLMDLRGRVLFTILRKVWLFGGWKGYR 88 (191)
Q Consensus 58 ~~k~~l~D~~G~~L~~i~~k~~~~~~~~v~~ 88 (191)
++.+.|+|++|+.|..+.+.- -+.|+...
T Consensus 61 gd~l~L~d~~G~~v~~f~~~~--~g~~~g~~ 89 (99)
T PF02974_consen 61 GDGLVLTDADGSVVAFFYRSG--DGRFEGQT 89 (99)
T ss_dssp TTEEEEE-TTS-EEEEEEEEC--TTEEEEEE
T ss_pred CCEEEEECCCCCEEEEEEccC--CeeEEeEc
Confidence 578999999999999987765 45777777
No 24
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=46.89 E-value=24 Score=29.49 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=30.7
Q ss_pred eeEeCCC-eEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEE
Q 042437 30 LVMQGNG-CTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFT 73 (191)
Q Consensus 30 ~s~~~~~-f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~ 73 (191)
+.+.|++ |.|.+.+|..+|+=+|. |++...-.|.+++|.+|+.
T Consensus 93 ~AI~G~GfF~V~~~~g~~~yTR~G~-F~~d~~G~Lvt~~G~~Vl~ 136 (259)
T TIGR02488 93 LAIEGEGFFQVLMPDGTTAYTRDGA-FKINAEGQLVTSNGYPLQP 136 (259)
T ss_pred EEEcCCcEEEEEcCCCCeEEeeCCc-eEECCCCCEECCCCCEecC
Confidence 4455555 57777788888887776 4555555688899999884
No 25
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=46.27 E-value=27 Score=29.33 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=31.5
Q ss_pred eeEeCCC-eEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEE
Q 042437 30 LVMQGNG-CTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFT 73 (191)
Q Consensus 30 ~s~~~~~-f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~ 73 (191)
+.+.|++ |.|.+.+|...|+=+|. |.+...-.|.+++|.+|+.
T Consensus 95 ~AI~G~GfF~V~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~Vl~ 138 (260)
T PRK12694 95 VAINGQGFFQVLMPDGTTAYTRDGS-FQTNAQGQLVTSSGYPLQP 138 (260)
T ss_pred EEEcCCcEEEEEcCCCCeEEeeCCC-ceECCCCCEECCCCCEecc
Confidence 4555655 57777888888988887 4555555688899999886
No 26
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=44.93 E-value=33 Score=25.28 Aligned_cols=32 Identities=9% Similarity=-0.009 Sum_probs=18.9
Q ss_pred CCceEEEEcCCCCeEEEEEeeee-ecceeEEEe
Q 042437 57 GSNEVYLMDLRGRVLFTILRKVW-LFGGWKGYR 88 (191)
Q Consensus 57 ~~~k~~l~D~~G~~L~~i~~k~~-~~~~~~v~~ 88 (191)
.++++.+.+..+.-.+.|.++.. -...++++.
T Consensus 64 ~Gd~i~v~~~~~~~~Y~V~~~~~v~~~~~~~~~ 96 (127)
T cd05828 64 PGDIITLQTLGGTYTYRVTSTRIVDADDTSVLA 96 (127)
T ss_pred CCCEEEEEECCEEEEEEEeeEEEECccccEEcc
Confidence 46777777776556666665554 344455444
No 27
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=44.66 E-value=37 Score=24.99 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=11.8
Q ss_pred CCceEEEEcCCCCeEEEEEeee
Q 042437 57 GSNEVYLMDLRGRVLFTILRKV 78 (191)
Q Consensus 57 ~~~k~~l~D~~G~~L~~i~~k~ 78 (191)
.++++.+.|..+.--+++....
T Consensus 67 ~Gd~v~v~~~~~~~~Y~V~~~~ 88 (126)
T cd06166 67 KGDEIKVTTKNGTYKYKITSIF 88 (126)
T ss_pred CCCEEEEEECCEEEEEEEEEEE
Confidence 3566666666554455554443
No 28
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=44.45 E-value=36 Score=25.94 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=36.4
Q ss_pred eEEEeCCCCEEEEEEecCCCC-------CceEEEEcCCCCeEEEEEeee-e-ecceeEEE
Q 042437 37 CTVFNENGEIVYRIDNYDNRG-------SNEVYLMDLRGRVLFTILRKV-W-LFGGWKGY 87 (191)
Q Consensus 37 f~I~D~~G~~vf~V~g~~~s~-------~~k~~l~D~~G~~L~~i~~k~-~-~~~~~~v~ 87 (191)
+.|+|++|+++-++..+.... .-...|.|.+|+.|+.-|... . +.+.|++-
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~~~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~ 60 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVHLQETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNS 60 (158)
T ss_pred CEEECCCCCEeeeeeHHHhhhcCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCcccc
Confidence 368999999999987664431 234678999999888654443 3 67888853
No 29
>PF15529 Toxin_49: Putative toxin 49
Probab=44.31 E-value=24 Score=24.99 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=14.6
Q ss_pred CCeEEEeCCCCEEEEEEec
Q 042437 35 NGCTVFNENGEIVYRIDNY 53 (191)
Q Consensus 35 ~~f~I~D~~G~~vf~V~g~ 53 (191)
.+|++||++|.++-++++.
T Consensus 30 t~Y~tY~~~G~~~kr~r~~ 48 (89)
T PF15529_consen 30 TSYTTYDEDGMIVKRYRGS 48 (89)
T ss_pred cceeEEcCCCcEeEEeecc
Confidence 5899999999955555444
No 30
>COG4998 Predicted endonuclease (RecB family) [DNA replication, recombination, and repair]
Probab=43.55 E-value=43 Score=26.63 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=29.2
Q ss_pred CCceeEEEeCCCCeEEEEEEeeeccCcceeeeeeeEEEEEeCCC-CH
Q 042437 129 GKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDDVLTLVVEPQV-DH 174 (191)
Q Consensus 129 ~~~~~~I~~~~~g~~VA~V~rk~~~~~~~~~~~dtY~l~V~pgv-D~ 174 (191)
-.++|.|+++ |..|++|.----. +..+|.++|..|+ |.
T Consensus 21 vArn~~ve~e--gveVgEiDIVAek------~GerYavEVKAG~vdi 59 (209)
T COG4998 21 VARNMPVEDE--GVEVGEIDIVAEK------GGERYAVEVKAGMVDI 59 (209)
T ss_pred EeecceeecC--CeEEEEEEEEEec------CCcEEEEEEeccccch
Confidence 4578889885 8999999754333 6789999999984 53
No 31
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=41.82 E-value=39 Score=28.22 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=30.7
Q ss_pred eeEeCCC-eEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEE
Q 042437 30 LVMQGNG-CTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFT 73 (191)
Q Consensus 30 ~s~~~~~-f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~ 73 (191)
+.+.|++ |.|.+.+|...|+=+|. |.+...-.|.+++|.+|+.
T Consensus 95 ~Ai~G~GfF~v~~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vl~ 138 (261)
T PRK12693 95 VAIEGQGFFQVQLPDGTIAYTRDGS-FKLDQDGQLVTSGGYPLQP 138 (261)
T ss_pred EEECCCcEEEEEcCCCCeEEeeCCC-eeECCCCCEECCCCCEEee
Confidence 4555655 56777788878887777 4554555688899999884
No 32
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=41.35 E-value=5.2 Score=27.82 Aligned_cols=43 Identities=26% Similarity=0.411 Sum_probs=21.4
Q ss_pred eeEeCCC-eEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEE
Q 042437 30 LVMQGNG-CTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLF 72 (191)
Q Consensus 30 ~s~~~~~-f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~ 72 (191)
+.|.+++ |-|+|.+|..+..-...-+-+.+-..+.|++|.+++
T Consensus 51 ~r~~~~gY~fi~d~~g~~l~hp~~p~~~G~n~~~~~D~~G~~~i 94 (95)
T PF08269_consen 51 LRYGGDGYFFIYDMDGVVLAHPSNPELEGKNLSDLKDPNGKYLI 94 (95)
T ss_dssp --SBTTB--EEE-TTSBEEEESS-GGGTT-B-TT-B-TT--BHH
T ss_pred cccCCCCeEEEEeCCCeEEEcCCCcccCCcccccCCCCCCCEEe
Confidence 4444433 889999998877654333445666678899998764
No 33
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=38.32 E-value=48 Score=27.35 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=25.6
Q ss_pred EeCCCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEEEEe
Q 042437 32 MQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILR 76 (191)
Q Consensus 32 ~~~~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~i~~ 76 (191)
+.++.+.+.+ .+..-++++=..-.-.-++.|+|++|+.+.++.-
T Consensus 102 ~~~~~~~~~~-~~~~~~~~~l~~~a~~vti~I~D~~G~~Vrt~~l 145 (225)
T PRK06655 102 VPGDTVLVGT-GGTTPFGVELPSAADNVTVTITDSAGQVVRTIDL 145 (225)
T ss_pred EecceEEecC-CCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEec
Confidence 3445555433 3455555543222334668888888888877644
No 34
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=37.50 E-value=1e+02 Score=24.03 Aligned_cols=7 Identities=29% Similarity=0.178 Sum_probs=2.6
Q ss_pred CCCeEEE
Q 042437 67 RGRVLFT 73 (191)
Q Consensus 67 ~G~~L~~ 73 (191)
+|+.|.+
T Consensus 114 ~g~~lG~ 120 (172)
T PRK00122 114 DGEELGK 120 (172)
T ss_pred CCcEEEE
Confidence 3333333
No 35
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=37.15 E-value=93 Score=20.53 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=26.6
Q ss_pred CeEEEeCCCCEEEEE-EecCC-----CCCceEEEEcCCCCeEEEEE
Q 042437 36 GCTVFNENGEIVYRI-DNYDN-----RGSNEVYLMDLRGRVLFTIL 75 (191)
Q Consensus 36 ~f~I~D~~G~~vf~V-~g~~~-----s~~~k~~l~D~~G~~L~~i~ 75 (191)
+=.|.|.+|+++-+| +|.+. ..-.+=.|.|.+|+.|-...
T Consensus 12 ~G~V~d~~G~~vG~vveGd~k~L~G~~vd~~G~I~d~~G~viGkae 57 (64)
T PF12396_consen 12 DGNVVDDDGNVVGRVVEGDPKKLVGKKVDEDGDILDKDGNVIGKAE 57 (64)
T ss_pred CCeEECCCCCEEEEEecCCHHHhcCCcCCCCCCEECCCCCEEEEEE
Confidence 446889999999995 66432 22344467777888777543
No 36
>PHA00458 single-stranded DNA-binding protein
Probab=36.59 E-value=24 Score=29.21 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=36.1
Q ss_pred ccccCcceEEEEEEeeeeEeCCCeEEEeCCCCEEEEEEecCCC--------CCceEEEEcCCCCeEEE
Q 042437 14 EYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNR--------GSNEVYLMDLRGRVLFT 73 (191)
Q Consensus 14 ~~~~~~~~~l~vk~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s--------~~~k~~l~D~~G~~L~~ 73 (191)
+|-.+-+....=|+......++.--..+.+|++.|+.+.+..- ....+.|.|+.|.+|-.
T Consensus 73 ~~e~np~kv~rgKK~lk~~egdmpf~eNedG~v~F~FK~~aS~~dkktGe~~~i~l~v~DskGK~l~~ 140 (233)
T PHA00458 73 EYEANPPKVQRGKKPLKPYEGDMPFFDNGDGTVTFKFKCYASYKDKKTGENKPIVLRVVDSKGKRIED 140 (233)
T ss_pred HHhhCcchhccCCCcccccccCCCcccCCCceEEEEEEeeeecccccCCcccccceeEEcCCCcCcCc
Confidence 4444444433333333334444333456789999999987531 23347799999988864
No 37
>TIGR02273 16S_RimM 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide.
Probab=34.91 E-value=97 Score=23.90 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=7.2
Q ss_pred EEEcCCCCeEEEEEe
Q 042437 62 YLMDLRGRVLFTILR 76 (191)
Q Consensus 62 ~l~D~~G~~L~~i~~ 76 (191)
.++|.+|+.|.+|..
T Consensus 104 ~V~d~~~~~lG~V~~ 118 (165)
T TIGR02273 104 EVVTEEGEELGKVVE 118 (165)
T ss_pred EEEcCCCcEEEEEEE
Confidence 344455555555444
No 38
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=34.08 E-value=1.4e+02 Score=23.08 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=34.9
Q ss_pred CCCeEEEeCCCCEEEEEEecCCC----CCceEE----EEcCC--CCeEEEEEeeee--ecceeEEEe
Q 042437 34 GNGCTVFNENGEIVYRIDNYDNR----GSNEVY----LMDLR--GRVLFTILRKVW--LFGGWKGYR 88 (191)
Q Consensus 34 ~~~f~I~D~~G~~vf~V~g~~~s----~~~k~~----l~D~~--G~~L~~i~~k~~--~~~~~~v~~ 88 (191)
..-|.|+|++|+++..++-.... .+.-+. +.|.+ |+.+++-|...- +.+.|...-
T Consensus 4 ~E~~~v~d~~~~~~~~~~r~~~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~ 70 (180)
T cd03676 4 NELYAVYGPFGEPLFEIERAASRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLV 70 (180)
T ss_pred CcceeeECCCCCEeEEEEecccccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeec
Confidence 45689999999999887544332 234444 33665 666665555443 678887665
No 39
>PRK12692 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=34.01 E-value=47 Score=27.95 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=29.7
Q ss_pred eeEeCCC-eEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEE
Q 042437 30 LVMQGNG-CTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLF 72 (191)
Q Consensus 30 ~s~~~~~-f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~ 72 (191)
+.+.|++ |.|.+.+|...|+=+|.+ .+...-.|.+++|.+|+
T Consensus 95 ~AI~G~GFF~V~~~~G~~~yTR~G~F-~~d~~G~Lvt~~G~~Vl 137 (262)
T PRK12692 95 LAVNGRGYFQVTSPNGEIQYTRAGSF-NKNAAGQLVTMEGYAVD 137 (262)
T ss_pred EEEcCCceEEEECCCCCeEEEeCCCc-eECCCCCEEcCCCCCcc
Confidence 4555644 667778888788877774 44444468889999886
No 40
>PRK12641 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=33.00 E-value=56 Score=27.32 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=24.3
Q ss_pred eEeCC-CeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEE
Q 042437 31 VMQGN-GCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFT 73 (191)
Q Consensus 31 s~~~~-~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~ 73 (191)
.+.|+ -|.|.+.+|...|+=+|.+ ++...-.|. ++|.+|+.
T Consensus 79 AI~G~GFF~V~~~~G~~~YTR~G~F-~~d~~G~L~-~~G~~Vl~ 120 (252)
T PRK12641 79 FIKDNGWLTIKDTNGQEAYTKNGHL-KINSKRKLT-VQNNEVIG 120 (252)
T ss_pred EEcCCcEEEEEcCCCCeEEeeCCCe-eECCCCCEE-eCCcEecc
Confidence 33443 3777788888888877774 322222233 66777664
No 41
>PRK14591 rimM 16S rRNA-processing protein RimM; Provisional
Probab=31.77 E-value=1.3e+02 Score=23.43 Aligned_cols=8 Identities=0% Similarity=0.052 Sum_probs=3.0
Q ss_pred cCCCCeEE
Q 042437 65 DLRGRVLF 72 (191)
Q Consensus 65 D~~G~~L~ 72 (191)
|.+|++|.
T Consensus 112 d~~g~~lG 119 (169)
T PRK14591 112 NINNDSFG 119 (169)
T ss_pred eCCCCEEE
Confidence 33333333
No 42
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=31.76 E-value=85 Score=25.92 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=11.4
Q ss_pred ceEEEEcCCCCeEEEEE
Q 042437 59 NEVYLMDLRGRVLFTIL 75 (191)
Q Consensus 59 ~k~~l~D~~G~~L~~i~ 75 (191)
-++.|+|++|+.+-++.
T Consensus 126 v~v~I~D~~G~vV~t~~ 142 (223)
T PRK12813 126 AELVVRDAAGAEVARET 142 (223)
T ss_pred EEEEEEcCCCCEEEEEe
Confidence 45677777777776654
No 43
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=31.69 E-value=1.4e+02 Score=23.01 Aligned_cols=16 Identities=13% Similarity=0.356 Sum_probs=7.2
Q ss_pred eEEEeCCCCEEEEEEe
Q 042437 37 CTVFNENGEIVYRIDN 52 (191)
Q Consensus 37 f~I~D~~G~~vf~V~g 52 (191)
|.|.|++|+.+-+|..
T Consensus 88 ~~V~d~~g~~lG~V~~ 103 (161)
T PRK13828 88 LAAVDTGGALLGRVKA 103 (161)
T ss_pred CEEEeCCCCEEEEEEE
Confidence 4444444444444444
No 44
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=31.57 E-value=1.3e+02 Score=20.57 Aligned_cols=14 Identities=21% Similarity=0.164 Sum_probs=7.6
Q ss_pred EEEcCCCCeEEEEE
Q 042437 62 YLMDLRGRVLFTIL 75 (191)
Q Consensus 62 ~l~D~~G~~L~~i~ 75 (191)
...|.+|+-++.++
T Consensus 56 ~~Td~~G~a~~~l~ 69 (92)
T smart00634 56 ATTDANGIATVTLT 69 (92)
T ss_pred eeeCCCCEEEEEEE
Confidence 34555565555554
No 45
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=31.15 E-value=36 Score=23.42 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=9.6
Q ss_pred CeEEEeCCCCEEEEE
Q 042437 36 GCTVFNENGEIVYRI 50 (191)
Q Consensus 36 ~f~I~D~~G~~vf~V 50 (191)
||.|+|.+|+.|++-
T Consensus 27 D~~v~d~~g~~vwrw 41 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRW 41 (82)
T ss_dssp EEEEE-TT--EEEET
T ss_pred EEEEECCCCCEEEEe
Confidence 577888899988876
No 46
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion]
Probab=30.97 E-value=58 Score=27.69 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=29.7
Q ss_pred CCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEE
Q 042437 35 NGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFT 73 (191)
Q Consensus 35 ~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~ 73 (191)
+-|.|...+|+..|+=+|. |+....-.|...+|-||+.
T Consensus 101 gfF~I~~~dG~~~YTR~G~-F~~d~~G~LVT~~G~~vl~ 138 (265)
T COG4786 101 GFFQIQTPDGTIAYTRDGS-FTVDEEGQLVTSNGYPVLD 138 (265)
T ss_pred ceEEEEcCCCCEEEeeCCc-eeECCCCCEEeCCCCCccC
Confidence 3478888899999999998 5666666777777777775
No 47
>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=30.35 E-value=46 Score=27.16 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=22.0
Q ss_pred eEeCCC-eEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEE
Q 042437 31 VMQGNG-CTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLF 72 (191)
Q Consensus 31 s~~~~~-f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~ 72 (191)
.+.|++ |.|.+.+|+..|+=+|.+ .+...-.| +++|.+|+
T Consensus 81 AI~G~GFF~V~~~~G~~~YTR~G~F-~~d~~G~L-t~~G~~Vl 121 (209)
T PRK12643 81 ALQQDGYLAVQLPDGSEAYTRNGNI-QISANGQM-TVQGYPLM 121 (209)
T ss_pred EECCCcEEEEEcCCCCeEEeeCCCc-eECCCCCC-cCCCcCcc
Confidence 334444 566666776667766663 33222234 66666666
No 48
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=29.91 E-value=39 Score=24.56 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=23.9
Q ss_pred EeCCCeEEEeCCCCEEEEEEecCCCCCceEEEEcC
Q 042437 32 MQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDL 66 (191)
Q Consensus 32 ~~~~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~ 66 (191)
|+ +++||.|+.|+=.-+.+|...+-+.|+.+.-.
T Consensus 34 Fp-dGlTv~Da~GqW~~~~~g~~~rE~Skvv~i~~ 67 (104)
T PF12098_consen 34 FP-DGLTVLDAYGQWRDRATGRLIRERSKVVIIVH 67 (104)
T ss_pred CC-CCceEEeccceEecCCCCcEeecccEEEEEEe
Confidence 54 89999999998777777776555555544433
No 49
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=29.32 E-value=88 Score=20.53 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=17.7
Q ss_pred CCCceEEEEcCCCCeEEEEEe
Q 042437 56 RGSNEVYLMDLRGRVLFTILR 76 (191)
Q Consensus 56 s~~~k~~l~D~~G~~L~~i~~ 76 (191)
.+..++.++|.+|++|..++=
T Consensus 43 ~G~WrV~V~~~~G~~l~~~~F 63 (66)
T PF11141_consen 43 PGDWRVEVVDEDGQVLGSLRF 63 (66)
T ss_pred CcCEEEEEEcCCCCEEEEEEE
Confidence 467899999999999988753
No 50
>PRK14592 rimM 16S rRNA-processing protein RimM; Provisional
Probab=29.14 E-value=1.6e+02 Score=22.74 Aligned_cols=13 Identities=31% Similarity=0.110 Sum_probs=4.8
Q ss_pred EEEeCCCCEEEEE
Q 042437 38 TVFNENGEIVYRI 50 (191)
Q Consensus 38 ~I~D~~G~~vf~V 50 (191)
+|+|++|+.+-+|
T Consensus 101 ~V~~~~g~~lG~V 113 (165)
T PRK14592 101 EVKLEDNTIYGYI 113 (165)
T ss_pred EEEcCCCCEEEEE
Confidence 3333333333333
No 51
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=29.07 E-value=1.1e+02 Score=25.58 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=39.4
Q ss_pred CCeEEEeCCCCEEEEEEecCC------------CCCceEEEEcCCCCeEEEEEeeee--ecceeEEEe
Q 042437 35 NGCTVFNENGEIVYRIDNYDN------------RGSNEVYLMDLRGRVLFTILRKVW--LFGGWKGYR 88 (191)
Q Consensus 35 ~~f~I~D~~G~~vf~V~g~~~------------s~~~k~~l~D~~G~~L~~i~~k~~--~~~~~~v~~ 88 (191)
+...|+|++++++-+..-+.. ...=...|.|.+|+.|++-|...- +.+.|++--
T Consensus 23 e~v~lvDe~d~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~ 90 (247)
T PLN02552 23 DECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTC 90 (247)
T ss_pred CeEEEEcCCCCEEeeeEHhhhhccccccCCCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceeccc
Confidence 689999999999998865321 123346788999999998776542 677887654
No 52
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=28.53 E-value=70 Score=26.54 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=26.1
Q ss_pred eeEeCCC-eEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEE
Q 042437 30 LVMQGNG-CTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFT 73 (191)
Q Consensus 30 ~s~~~~~-f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~ 73 (191)
+.+.|++ |.|.+.+|. .|+=+|. |.+...-.|.+++|.+|+-
T Consensus 81 lAI~G~GFF~V~~~~G~-~yTR~G~-F~~d~~G~Lvt~~G~~vlg 123 (238)
T PRK12690 81 FAIEGEGFFMVETPQGE-RLTRAGS-FTPNAEGELVDPDGNRLLD 123 (238)
T ss_pred EEECCCcEEEEEcCCCC-EEeeCCC-eEECCCCCEEcCCCCEeEC
Confidence 4445544 677777774 4777775 3444444577777877763
No 53
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.16 E-value=36 Score=31.11 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=40.8
Q ss_pred CeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEEEEeeee-ecceeEE
Q 042437 36 GCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKVW-LFGGWKG 86 (191)
Q Consensus 36 ~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~i~~k~~-~~~~~~v 86 (191)
+||=.|..-+.++.-+|+.+|-.+++.|.|++|+|+..=..-.+ .++.|.+
T Consensus 345 nyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~G~LltRGPYTi 396 (542)
T COG1021 345 NYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTRGPYTI 396 (542)
T ss_pred cccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCCcceeeecCCeee
Confidence 57777888899999999999999999999999999986544444 4555543
No 54
>COG4787 FlgF Flagellar basal body rod protein [Cell motility and secretion]
Probab=26.47 E-value=64 Score=26.81 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=33.8
Q ss_pred cCcceEEEEEEeeeeEeCCC-eEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEE
Q 042437 17 TSKRESFTIWMKSLVMQGNG-CTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLF 72 (191)
Q Consensus 17 ~~~~~~l~vk~k~~s~~~~~-f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~ 72 (191)
++....++=|.--..+.+|+ +.|.|.+|...|+=.|.+ .+..+. ++.-+|.|++
T Consensus 67 spG~l~~TgR~LDvaiq~DGwlaVq~~dG~EaYTRnG~~-qI~a~g-~lTiqg~pVi 121 (251)
T COG4787 67 SPGSLDYTGRPLDVAIQGDGWLAVQDADGSEAYTRNGNI-QIDATG-QLTIQGHPVI 121 (251)
T ss_pred CCccccccCCcceEEEccCceEEEEcCCCcchheecCce-EECccc-ceecCCCeee
Confidence 45555555554445555555 689999999999988874 332222 4555666655
No 55
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=26.02 E-value=1.1e+02 Score=22.80 Aligned_cols=23 Identities=4% Similarity=0.108 Sum_probs=14.1
Q ss_pred CCceEEEEcCCCCeEEEEEeeee
Q 042437 57 GSNEVYLMDLRGRVLFTILRKVW 79 (191)
Q Consensus 57 ~~~k~~l~D~~G~~L~~i~~k~~ 79 (191)
-++++.+.|..|.--++|.....
T Consensus 68 ~Gd~i~v~~~~~~~~Y~V~~~~~ 90 (137)
T cd05830 68 PGDKIVVETADGWYTYVVRSSEI 90 (137)
T ss_pred CCCEEEEEECCeEEEEEEeEEEE
Confidence 46677777766665566655543
No 56
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=26.02 E-value=70 Score=27.96 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=27.9
Q ss_pred CeEEEEEEeeeccCcceeeeeeeEEEEEeCCCCHHHHHHHH-HHHHhhh
Q 042437 141 GDVVAEARRKQSSNSGVLLGDDVLTLVVEPQVDHSFIMALV-TVYGLMR 188 (191)
Q Consensus 141 g~~VA~V~rk~~~~~~~~~~~dtY~l~V~pgvD~ali~alv-i~lD~i~ 188 (191)
|..+..|.-.... ......+.|.|.||.|.+|++|++ .++++..
T Consensus 141 g~k~v~vdP~~t~----~a~~ad~~i~i~PGtD~al~~a~~~~ii~~~~ 185 (432)
T PF00384_consen 141 GAKLVVVDPRRTP----TAAKADEWIPIRPGTDAALALAMAHVIIDEGL 185 (432)
T ss_dssp TSEEEEEESSB-H----HGGGTSEEEEE-TTTHHHHHHHHHHHHHHTTT
T ss_pred CcceEEEEeccch----hhhhccccccccccccHHhhcccccceeeccc
Confidence 3445555544432 113567789999999999999988 6666543
No 57
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=25.81 E-value=2.5e+02 Score=23.79 Aligned_cols=45 Identities=9% Similarity=0.114 Sum_probs=26.6
Q ss_pred EeCCCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEEEEe
Q 042437 32 MQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILR 76 (191)
Q Consensus 32 ~~~~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~i~~ 76 (191)
+.++.+.+.|..+..-|+++=..-.-.-++.|+|++|+++-++.-
T Consensus 116 v~~~~~~l~~~~~~~~~~~~l~~~a~~v~v~I~D~~G~~V~t~~l 160 (259)
T PRK12812 116 VSDNAVKLTGADELIALKLYFPEDSDEGTLEIYDSNNKLVEKIDF 160 (259)
T ss_pred EecceeeeccCcceeEEEEecCCcCceEEEEEEeCCCCEEEEEec
Confidence 445556554443444555542222235678899999999877743
No 58
>PF08829 AlphaC_N: Alpha C protein N terminal; InterPro: IPR014933 The alpha C protein (ACP) is found in Streptococcus and acts as an invasin which plays a role in the internalisation and translocation of the organism across human epithelial surfaces. Group B Streptococcus is the leading cause of diseases including bacterial pneumonia, sepsis and meningitis. The N-terminal of ACP is associated with virulence and forms a beta sandwich and a three helix bundle [, , ]. ; PDB: 1YWM_A 2O0I_1.
Probab=24.81 E-value=24 Score=28.02 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=19.4
Q ss_pred CeEEEeCCCCEEEEEEecCCCCCceEEEEcC
Q 042437 36 GCTVFNENGEIVYRIDNYDNRGSNEVYLMDL 66 (191)
Q Consensus 36 ~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~ 66 (191)
.|+|.|++|++.++-||..--..=-+.++|+
T Consensus 92 tY~ild~~G~P~~k~DGQvdIvsvnlt~Yds 122 (194)
T PF08829_consen 92 TYNILDEDGNPHVKSDGQVDIVSVNLTFYDS 122 (194)
T ss_dssp EEEEEETTSSB-B-TTSSB-EEEEEEEEE--
T ss_pred EEEeecCCCCcccCCCCcEEEEEEEEEEeCc
Confidence 5888999999998888886544445566654
No 59
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=24.47 E-value=1e+02 Score=25.69 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=25.2
Q ss_pred CCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEE
Q 042437 35 NGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFT 73 (191)
Q Consensus 35 ~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~ 73 (191)
+.|-+...+|...|+=+|. |++...-.|.+++|.+|+-
T Consensus 99 ~gFf~v~~~G~~~yTR~G~-F~~d~~G~Lvt~~G~~vlg 136 (257)
T PRK12819 99 SSFFVTSKNGETFLTRDGS-FTLNSDRYLQTASGAFVMG 136 (257)
T ss_pred CEEEEEcCCCCeeEeeCCC-eeECCCCCEEcCCCCEEec
Confidence 4555666778777887776 3444445577778877774
No 60
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=24.30 E-value=51 Score=24.71 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=25.0
Q ss_pred CCCEEEEEEecCCC--------CCceEEEEcCCCCeEEE
Q 042437 43 NGEIVYRIDNYDNR--------GSNEVYLMDLRGRVLFT 73 (191)
Q Consensus 43 ~G~~vf~V~g~~~s--------~~~k~~l~D~~G~~L~~ 73 (191)
+|..++.|+|.... -.=++.++|.+|++|.+
T Consensus 65 ~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~ 103 (149)
T PF11906_consen 65 DGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLAR 103 (149)
T ss_pred CCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEE
Confidence 68899999998642 14578999999999975
No 61
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=24.29 E-value=2.6e+02 Score=19.67 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=27.4
Q ss_pred eeeEeCCCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEE
Q 042437 29 SLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLF 72 (191)
Q Consensus 29 ~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~ 72 (191)
.+...+++..++|.+|+.+-+..... .+.+.-.-++|.||.
T Consensus 56 ~W~~~gd~l~L~d~~G~~v~~f~~~~---~g~~~g~~~~g~~~~ 96 (99)
T PF02974_consen 56 GWRPTGDGLVLTDADGSVVAFFYRSG---DGRFEGQTPDGQPLS 96 (99)
T ss_dssp EEEEETTEEEEE-TTS-EEEEEEEEC---TTEEEEEECCCEEEE
T ss_pred ceeEcCCEEEEECCCCCEEEEEEccC---CeeEEeEcCCCCEEE
Confidence 36678899999999999998876553 334555566675553
No 62
>cd00004 Sortase Sortases are cysteine transpeptidases, found in gram-positive bacteria, that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The different classes are called Sortase A or SrtA (subfamily 1), B or SrtB (subfamily 2), C or SrtC (subfamily3), D or SrtD (subfamilies 4 and 5), and E or SrtE. In two different sortase subfamilies, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one s
Probab=24.28 E-value=1.3e+02 Score=21.86 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=15.9
Q ss_pred CCceEEEEcCCCCeEEEEEeeee
Q 042437 57 GSNEVYLMDLRGRVLFTILRKVW 79 (191)
Q Consensus 57 ~~~k~~l~D~~G~~L~~i~~k~~ 79 (191)
.++++.|.|..+.-.++|.....
T Consensus 67 ~Gd~v~v~~~~~~~~Y~V~~~~~ 89 (128)
T cd00004 67 KGDKIYLTDGGKTYVYKVTSILT 89 (128)
T ss_pred CCCEEEEEECCEEEEEEEEEEEE
Confidence 46778888876666677766544
No 63
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=24.12 E-value=1.3e+02 Score=26.05 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=13.1
Q ss_pred CceEEEEcCCCCeEEEEE
Q 042437 58 SNEVYLMDLRGRVLFTIL 75 (191)
Q Consensus 58 ~~k~~l~D~~G~~L~~i~ 75 (191)
.-++.|+|++|+.+-++.
T Consensus 167 ~v~I~I~Da~G~vVrTi~ 184 (295)
T PRK05842 167 VPAIQILNENNELVKTIP 184 (295)
T ss_pred eEEEEEEcCCCCEEEEEe
Confidence 356788888888887764
No 64
>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme. This family contains only archaeal MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=23.90 E-value=1.5e+02 Score=21.53 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=21.4
Q ss_pred cCCCCCCcc----ccccCcceEEEEEEeeeeEeCCCeEEEeCCCCEE
Q 042437 5 HPLPIVEVA----EYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIV 47 (191)
Q Consensus 5 ~~~~~~~~~----~~~~~~~~~l~vk~k~~s~~~~~f~I~D~~G~~v 47 (191)
||++.+.++ .+|......+.|- .+.+..+.|.-+|.+|+.+
T Consensus 68 HP~~~~~PS~~D~~~~~~~~~~~lIv--s~~~~~~~~~a~~~~g~~~ 112 (117)
T cd08072 68 HPSGSPRPSDADLSFFSKTGLVHIIV--GYPYDEDDWRAYDSDGEPV 112 (117)
T ss_pred CCCCCCCCCHHHHHhhhcCCCEEEEE--ECcCCCCCEEEEecCCCEE
Confidence 666655555 3444322333332 2222346788888887654
No 65
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=23.88 E-value=53 Score=30.89 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.2
Q ss_pred eeEEEEEeCCCCHHHHHHHH-HHHHh
Q 042437 162 DVLTLVVEPQVDHSFIMALV-TVYGL 186 (191)
Q Consensus 162 dtY~l~V~pgvD~ali~alv-i~lD~ 186 (191)
|...|.|.||.|.+|++||+ ++|++
T Consensus 226 dd~~l~irPGTD~ALalam~~~ii~e 251 (609)
T cd02769 226 GAEWIAIRPGTDVALMLALAHTLVTE 251 (609)
T ss_pred cCcEeccCCCcHHHHHHHHHHHHHHc
Confidence 45679999999999999998 45443
No 66
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=23.80 E-value=2.9e+02 Score=22.68 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.7
Q ss_pred CeEEEeCCCCEEEEEEec
Q 042437 36 GCTVFNENGEIVYRIDNY 53 (191)
Q Consensus 36 ~f~I~D~~G~~vf~V~g~ 53 (191)
..+|+|++|++|.+++..
T Consensus 129 ti~I~D~~G~~Vrt~~lg 146 (225)
T PRK06655 129 TVTITDSAGQVVRTIDLG 146 (225)
T ss_pred EEEEEcCCCCEEEEEecC
Confidence 489999999999998764
No 67
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=23.38 E-value=1.3e+02 Score=25.03 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=0.0
Q ss_pred eeEeCCCeEEEeCCCCE-EEEEEecCCCCCceEEEEcCCCCeE
Q 042437 30 LVMQGNGCTVFNENGEI-VYRIDNYDNRGSNEVYLMDLRGRVL 71 (191)
Q Consensus 30 ~s~~~~~f~I~D~~G~~-vf~V~g~~~s~~~k~~l~D~~G~~L 71 (191)
|...++.++..|++|+. -|+|.+.. +.++|.+|+++
T Consensus 91 w~~~~~~i~L~~~~g~~~yF~v~e~~------L~mLD~~G~~i 127 (234)
T PRK10523 91 WARTADKLVLTDSKGEKSYYRAKGDA------LEMLDREGNPI 127 (234)
T ss_pred EEecCCEEEEecCCCCEeEEEECCCE------EEEecCCCCcc
No 68
>PF06891 P2_Phage_GpR: P2 phage tail completion protein R (GpR); InterPro: IPR009678 This family consists of P2 phage tail completion protein R (GpR) and similar sequences from related phage. GpR is thought to be a tail completion protein which is essential for stable head joining []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.89 E-value=2.8e+02 Score=20.74 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=17.1
Q ss_pred eeeeEEEEEe----CCCCHHHHHHHHHHH
Q 042437 160 GDDVLTLVVE----PQVDHSFIMALVTVY 184 (191)
Q Consensus 160 ~~dtY~l~V~----pgvD~ali~alvi~l 184 (191)
+.-.|.+.|. || |+..+++.++++
T Consensus 49 ~~~~Y~~~i~i~df~~-~~d~l~~~v~~W 76 (135)
T PF06891_consen 49 AEYRYTAVISIEDFPG-DPDLLMAPVLAW 76 (135)
T ss_pred EEEEEEEEEEEEECCC-CHHHHHHHHHHH
Confidence 3556666554 77 899988888875
No 69
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=22.86 E-value=1.6e+02 Score=16.72 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=15.1
Q ss_pred EeCCCCEEEEEEecCCCCCceEEEEcCCCCeEE
Q 042437 40 FNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLF 72 (191)
Q Consensus 40 ~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~ 72 (191)
||++|+++=.++... .....-+|+.|+++-
T Consensus 1 YD~~G~l~~~~d~~G---~~~~y~YD~~g~l~~ 30 (38)
T PF05593_consen 1 YDANGRLTSVTDPDG---RTTRYTYDAAGRLTS 30 (38)
T ss_pred CCCCCCEEEEEcCCC---CEEEEEECCCCCEEE
Confidence 356666665554322 222355666666543
No 70
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=22.75 E-value=73 Score=24.24 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=22.6
Q ss_pred EEEecCC--CCCceEEEEcCCCCeEEEEEeeee
Q 042437 49 RIDNYDN--RGSNEVYLMDLRGRVLFTILRKVW 79 (191)
Q Consensus 49 ~V~g~~~--s~~~k~~l~D~~G~~L~~i~~k~~ 79 (191)
|++|-.- |.--...|+|++|+.+++-.++.+
T Consensus 37 r~~G~D~Ygsfl~~i~l~d~~g~vv~~~~~~~L 69 (133)
T PF07680_consen 37 RVEGPDVYGSFLIGIQLKDSTGHVVLNWDQEKL 69 (133)
T ss_pred EcCCCccCCceeeEEEEECCCCCEEEEeCHHHh
Confidence 3444433 556788999999999999877654
No 71
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=22.06 E-value=3.1e+02 Score=19.77 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=15.7
Q ss_pred EEEEEe-eeeEeCCCeEEEeCCCCEEEEEEec
Q 042437 23 FTIWMK-SLVMQGNGCTVFNENGEIVYRIDNY 53 (191)
Q Consensus 23 l~vk~k-~~s~~~~~f~I~D~~G~~vf~V~g~ 53 (191)
|.|... .++|+..+|+|-+. |++++..--+
T Consensus 49 yrI~~D~tlaFSd~HfTv~~~-g~Pi~qf~rY 79 (100)
T PF06903_consen 49 YRITPDGTLAFSDTHFTVDND-GKPIQQFIRY 79 (100)
T ss_pred EEEeCCCeEEEecceEEECCC-CCceEeEEEE
Confidence 334333 56666666665543 6665555444
No 72
>cd06165 Sortase_A_1 Sortase A (SrtA) or subfamily-1 sortases are cysteine transpeptidases found in gram-positive bacteria that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal (usually a pentapeptide motif), and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. This group contains a subset of Class A (subfamily-1) sortases, excluding SrtA from Staphylococcus aureus. Sortase A cleaves between threonine and glycine of the LPXTG motif in a wide range of protein substrates. It affects the ability of a pathogen to establish successful infection. Sortase A contains an N-terminal region that functions as both a signal peptide for secretion and a stop-tra
Probab=22.02 E-value=1.4e+02 Score=21.78 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=14.1
Q ss_pred CCceEEEEcCCCCeEEEEEeeee
Q 042437 57 GSNEVYLMDLRGRVLFTILRKVW 79 (191)
Q Consensus 57 ~~~k~~l~D~~G~~L~~i~~k~~ 79 (191)
.++++.|.+..+.--+.|.....
T Consensus 66 ~Gd~I~l~~~~~~~~Y~V~~~~~ 88 (127)
T cd06165 66 VGDKIYLTDKDNVYEYKVTSKKI 88 (127)
T ss_pred CCCEEEEEECCEEEEEEEeeEEE
Confidence 36677777766666666655543
No 73
>PF04170 NlpE: NlpE N-terminal domain; InterPro: IPR007298 This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway []. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. NlpE from Escherichia coli and Salmonella typhi is also known to confer copper tolerance in copper-sensitive strains of E. coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes [].; PDB: 3LHN_A 2Z4I_B 2Z4H_A.
Probab=21.68 E-value=1.8e+02 Score=19.93 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=7.2
Q ss_pred ccCcceEEEEEE
Q 042437 16 VTSKRESFTIWM 27 (191)
Q Consensus 16 ~~~~~~~l~vk~ 27 (191)
|.--.++|++++
T Consensus 10 C~GI~t~L~L~~ 21 (87)
T PF04170_consen 10 CPGIKTTLTLNA 21 (87)
T ss_dssp SSEEEEEEEE-T
T ss_pred CCCeEEEEEECC
Confidence 566677777753
No 74
>PRK14590 rimM 16S rRNA-processing protein RimM; Provisional
Probab=21.59 E-value=2.7e+02 Score=21.69 Aligned_cols=14 Identities=7% Similarity=0.161 Sum_probs=7.1
Q ss_pred EEEcCCCCeEEEEE
Q 042437 62 YLMDLRGRVLFTIL 75 (191)
Q Consensus 62 ~l~D~~G~~L~~i~ 75 (191)
.+++...+.|+.|.
T Consensus 121 ~v~~~~a~dllvV~ 134 (171)
T PRK14590 121 DVQDNPAHPILVFI 134 (171)
T ss_pred EEecCCCceEEEEE
Confidence 34445555555553
No 75
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=21.34 E-value=76 Score=19.86 Aligned_cols=16 Identities=25% Similarity=0.273 Sum_probs=11.3
Q ss_pred CeEEEeCCCCEEEEEE
Q 042437 36 GCTVFNENGEIVYRID 51 (191)
Q Consensus 36 ~f~I~D~~G~~vf~V~ 51 (191)
=|.=.|++|++.|.=.
T Consensus 15 vYk~~D~~G~v~ysd~ 30 (60)
T PF13511_consen 15 VYKWVDENGVVHYSDT 30 (60)
T ss_pred EEEEECCCCCEEECcc
Confidence 3555688888888654
No 76
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=20.95 E-value=2.1e+02 Score=23.52 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=14.9
Q ss_pred CceEEEEcCCCCeEEEEEe
Q 042437 58 SNEVYLMDLRGRVLFTILR 76 (191)
Q Consensus 58 ~~k~~l~D~~G~~L~~i~~ 76 (191)
.-.+.|+|++|+.+-++.-
T Consensus 123 ~v~i~I~d~~G~~V~t~~l 141 (221)
T PRK12634 123 FVNFEITDANGAFVKQISV 141 (221)
T ss_pred eEEEEEEcCCCCEEEEEec
Confidence 4468889999999888754
No 77
>PF06357 Omega-toxin: Omega-atracotoxin; InterPro: IPR009415 This family consists of several Hadronyche versuta (Blue mountains funnel-web spider) specific omega-atracotoxin proteins. Omega-Atracotoxin-Hv1a is an insect-specific neurotoxin whose phylogenetic specificity derives from its ability to antagonise insect, but not vertebrate, voltage-gated calcium channels. Two spatially proximal residues, Asn(27) and Arg(35), form a contiguous molecular surface that is essential for toxin activity. It has been proposed that this surface of the beta-hairpin is a key site for interaction of the toxin with insect calcium channels [].; GO: 0019855 calcium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AXH_A 1HVW_A.
Probab=20.41 E-value=91 Score=18.10 Aligned_cols=11 Identities=64% Similarity=0.839 Sum_probs=7.0
Q ss_pred eCCCCEEEEEE
Q 042437 41 NENGEIVYRID 51 (191)
Q Consensus 41 D~~G~~vf~V~ 51 (191)
++||+.|+|.|
T Consensus 27 NeNGntV~RCd 37 (37)
T PF06357_consen 27 NENGNTVKRCD 37 (37)
T ss_dssp -SSS-EEEEE-
T ss_pred ccCCceeeccC
Confidence 68999998875
No 78
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=20.23 E-value=1.2e+02 Score=21.75 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=19.1
Q ss_pred CceEEEEcCCCCeEEEEEee----eeecceeEEEe
Q 042437 58 SNEVYLMDLRGRVLFTILRK----VWLFGGWKGYR 88 (191)
Q Consensus 58 ~~k~~l~D~~G~~L~~i~~k----~~~~~~~~v~~ 88 (191)
+....++|.+|.--+.=+.. .+.-+.|.||+
T Consensus 70 G~~Yyl~d~dg~g~~~~~~~~~~~~~~~p~W~i~~ 104 (105)
T PF11191_consen 70 GPPYYLVDPDGDGNFSRSDANSDSDVSPPQWVIFS 104 (105)
T ss_pred CCCEEEECCCCCCcccccccccCCCCCCcEEEEee
Confidence 47888888888655543333 12566776653
Done!