Query 042437
Match_columns 191
No_of_seqs 103 out of 466
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 10:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 3.5E-40 1.2E-44 268.6 18.5 172 14-190 31-213 (217)
2 1zxu_A AT5G01750 protein; PFAM 98.1 1.7E-05 5.7E-10 63.7 9.3 87 17-107 59-151 (217)
3 2v2f_A Penicillin binding prot 48.5 10 0.00035 19.2 1.8 14 61-74 7-20 (26)
4 1hzt_A Isopentenyl diphosphate 39.5 19 0.00066 26.6 2.8 52 35-86 4-64 (190)
5 3c12_A FLGD, flagellar protein 39.1 24 0.00081 25.4 3.2 18 58-75 40-57 (138)
6 3u88_M Histone-lysine N-methyl 38.8 20 0.00067 22.9 2.3 19 166-184 28-46 (75)
7 2dho_A Isopentenyl-diphosphate 34.9 42 0.0014 26.3 4.2 53 34-86 26-91 (235)
8 4he6_A Peptidase family U32; u 33.4 45 0.0016 21.9 3.7 33 41-74 16-50 (89)
9 2pny_A Isopentenyl-diphosphate 31.8 44 0.0015 26.4 4.0 53 34-86 37-102 (246)
10 1q27_A Putative nudix hydrolas 31.3 31 0.0011 24.8 2.8 51 35-85 7-65 (171)
11 2ln7_A LPXTG-SITE transpeptida 30.9 11 0.00037 27.7 0.1 22 57-78 78-99 (147)
12 2h1z_A Hybrid atracotoxin; bet 30.1 38 0.0013 19.2 2.2 12 41-52 28-39 (39)
13 3osv_A Flagellar basal-BODY RO 27.8 63 0.0022 23.1 3.9 17 59-75 39-55 (138)
14 3h9n_A Ribosome maturation fac 26.5 1.1E+02 0.0039 22.8 5.2 26 62-87 104-131 (177)
15 2vnl_A Bifunctional tail prote 24.6 85 0.0029 23.3 4.0 55 15-75 49-103 (151)
16 3fn5_A Sortase A; sortase-fold 24.1 20 0.00068 27.5 0.5 20 34-53 102-121 (187)
17 2kw8_A LPXTG-SITE transpeptida 23.0 20 0.00068 26.5 0.3 20 58-77 92-111 (158)
18 3oe3_A Putative periplasmic pr 22.5 1.6E+02 0.0056 20.0 5.0 39 29-73 46-84 (98)
19 2fkb_A Putative nudix hydrolas 20.7 1.6E+02 0.0053 21.0 5.0 53 34-86 9-69 (180)
20 3dzw_A Agglutinin; lectin, man 20.5 2E+02 0.0068 19.2 5.4 16 35-52 29-44 (109)
21 3isy_A Bsupi, intracellular pr 20.4 1.2E+02 0.0043 21.4 4.1 17 60-76 45-61 (120)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=3.5e-40 Score=268.61 Aligned_cols=172 Identities=18% Similarity=0.341 Sum_probs=131.4
Q ss_pred ccccCcceEEEEEEeeeeEeCCCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEEEEeeee-ecceeEEEecCCC
Q 042437 14 EYVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTILRKVW-LFGGWKGYRGDNG 92 (191)
Q Consensus 14 ~~~~~~~~~l~vk~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~i~~k~~-~~~~~~v~~~~~g 92 (191)
+||++++++|+||||.+++++++|+|+|++|+++|+|+++.++++.++.|+|++|++|++|++|.+ ++++|++|+ |
T Consensus 31 ~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~rk~~~~~~~~~v~~---~ 107 (217)
T 1zxu_A 31 KYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFR---G 107 (217)
T ss_dssp GGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC------CEEEEEE---T
T ss_pred cccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCEEEEEEccccccCcEEEEEc---C
Confidence 899999999999999999998899999999999999999999999999999999999999999999 999999999 4
Q ss_pred CCCCCCCceEEEEeceeEEEecCCC--------CCCceeEEE-e-cCCceeEEEeCCCCeEEEEEEeeeccCcceeeeee
Q 042437 93 DKLNKERPRFQVSKKGQITLLSSSS--------NAETSCYKL-E-AGKSAFKIVDCSRGDVVAEARRKQSSNSGVLLGDD 162 (191)
Q Consensus 93 ~~~~~~~~~f~vkk~~~~~~~~~~~--------~~~~~~~~v-G-~~~~~~~I~~~~~g~~VA~V~rk~~~~~~~~~~~d 162 (191)
+..+.++++|+||++..++ +++++ ..+..+|+| | |++++|+|+++++|++||+|+|++.. .++++++|
T Consensus 108 ~~~~~~~~i~~vrk~~~~~-~~~~~~V~~~~~~~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~kk~~~-~~~~~~~D 185 (217)
T 1zxu_A 108 GSTDQRDLLYTVKRSSMLQ-LKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTV-QSVFLGKD 185 (217)
T ss_dssp TCCCGGGEEEEEEC--------CCEEEEETTCCC-CCCSEEEESCTTTTCCEEEETTTCCEEEEEEEC---------CBC
T ss_pred CCCCCCcEEEEEEEecccc-CCCeEEEEECCCCCCCceEEEEEEeEeCCEEEEEECCCCEEEEEEEeeeec-cccccCCc
Confidence 4333346899999983222 22222 224678999 9 99999999997337999999999754 88889999
Q ss_pred eEEEEEeCCCCHHHHHHHHHHHHhhhcc
Q 042437 163 VLTLVVEPQVDHSFIMALVTVYGLMRHR 190 (191)
Q Consensus 163 tY~l~V~pgvD~ali~alvi~lD~i~~~ 190 (191)
+|.|+|.|++|.+|+||+|++||++.++
T Consensus 186 ~y~l~V~p~~D~aliialvv~iD~~~~~ 213 (217)
T 1zxu_A 186 NFSVTVYPNVDYAFIASLVVILDDVNRE 213 (217)
T ss_dssp SEEEEECTTSBHHHHHHHHHHHHHHHC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999764
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=98.08 E-value=1.7e-05 Score=63.68 Aligned_cols=87 Identities=13% Similarity=0.149 Sum_probs=61.1
Q ss_pred cCcceEEEEEEeeeeEeCCCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCC----eEEEEEeee-e-ecceeEEEecC
Q 042437 17 TSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGR----VLFTILRKV-W-LFGGWKGYRGD 90 (191)
Q Consensus 17 ~~~~~~l~vk~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~----~L~~i~~k~-~-~~~~~~v~~~~ 90 (191)
.+....|+|..+.++++ +.+.|+|.+|++++++..+.+++..+..++++.+. +|++|+++. + +++.|+|+.+
T Consensus 59 ~~G~~vf~V~~~~~~~~-~~~~l~D~~G~~l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~- 136 (217)
T 1zxu_A 59 VNGNLLFKVKEPVFGLH-DKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLG- 136 (217)
T ss_dssp TTSCEEEEEECSSTTCC-SEEEEECTTSCEEEEEEC------CEEEEEETTCCCGGGEEEEEEC-------CCEEEEET-
T ss_pred CCCCEEEEEEccccCCC-CEEEEECCCCCEEEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEEC-
Confidence 45688999999877774 79999999999999999999999999999998875 799999984 5 8999999983
Q ss_pred CCCCCCCCCceEEEEec
Q 042437 91 NGDKLNKERPRFQVSKK 107 (191)
Q Consensus 91 ~g~~~~~~~~~f~vkk~ 107 (191)
+...++...++|+-.
T Consensus 137 --~~~~~~~~~~~I~G~ 151 (217)
T 1zxu_A 137 --HNKDEKRCDFRVKGS 151 (217)
T ss_dssp --TCCC-CCCSEEEESC
T ss_pred --CCCCCCceEEEEEEe
Confidence 222233466777644
No 3
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=48.52 E-value=10 Score=19.23 Aligned_cols=14 Identities=7% Similarity=0.261 Sum_probs=10.7
Q ss_pred EEEEcCCCCeEEEE
Q 042437 61 VYLMDLRGRVLFTI 74 (191)
Q Consensus 61 ~~l~D~~G~~L~~i 74 (191)
-.|+|.+|+++.++
T Consensus 7 s~IYD~~g~~i~~l 20 (26)
T 2v2f_A 7 SKIYDNKNQLIADL 20 (26)
T ss_pred CEEEeCCCCEeeec
Confidence 46788888888776
No 4
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=39.53 E-value=19 Score=26.65 Aligned_cols=52 Identities=17% Similarity=0.281 Sum_probs=18.2
Q ss_pred CCeEEEeCCCCEEEEEEecCCC-------CCceEEEEcCCCCeEEEEEeee-e-ecceeEE
Q 042437 35 NGCTVFNENGEIVYRIDNYDNR-------GSNEVYLMDLRGRVLFTILRKV-W-LFGGWKG 86 (191)
Q Consensus 35 ~~f~I~D~~G~~vf~V~g~~~s-------~~~k~~l~D~~G~~L~~i~~k~-~-~~~~~~v 86 (191)
.-+.|+|.+|+++..+.-.... ..-...+.+.+|+.|+.-|... - +.+.|+.
T Consensus 4 E~~~v~d~~~~~~g~~~r~~~~~~~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~ 64 (190)
T 1hzt_A 4 EHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTN 64 (190)
T ss_dssp ---------------------------CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEE
T ss_pred eEEEEECCCCCEeeeEEHhhhcccCCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccC
Confidence 3578999999999877555433 1224467888898777544332 2 5678876
No 5
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=39.09 E-value=24 Score=25.42 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=12.2
Q ss_pred CceEEEEcCCCCeEEEEE
Q 042437 58 SNEVYLMDLRGRVLFTIL 75 (191)
Q Consensus 58 ~~k~~l~D~~G~~L~~i~ 75 (191)
.-++.|+|++|+.+-++.
T Consensus 40 ~v~v~I~d~~G~~V~t~~ 57 (138)
T 3c12_A 40 FVNFEITDANGTFVKQLS 57 (138)
T ss_dssp EEEEEEECSSCCEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEE
Confidence 345677777777777765
No 6
>3u88_M Histone-lysine N-methyltransferase MLL; menin, MEN1, MLL, JUND, ledgf, TPR, transcription; HET: CHD 0BR GGB; 3.00A {Homo sapiens}
Probab=38.85 E-value=20 Score=22.92 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.6
Q ss_pred EEEeCCCCHHHHHHHHHHH
Q 042437 166 LVVEPQVDHSFIMALVTVY 184 (191)
Q Consensus 166 l~V~pgvD~ali~alvi~l 184 (191)
|-|.||+|.+|.+..+|--
T Consensus 28 lgvgpGFDAALqvSa~Ig~ 46 (75)
T 3u88_M 28 LRVGPGFDAALQVSAAIGT 46 (75)
T ss_dssp CEECCCCCHHHHHHHHHHH
T ss_pred HccCcChhHHHHHHHHHHH
Confidence 5789999999988777653
No 7
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=34.88 E-value=42 Score=26.30 Aligned_cols=53 Identities=13% Similarity=0.227 Sum_probs=35.0
Q ss_pred CCCeEEEeCCCCEEEEEEecCCC---------CC--ceEEEEcCCCCeEEEEEeee-e-ecceeEE
Q 042437 34 GNGCTVFNENGEIVYRIDNYDNR---------GS--NEVYLMDLRGRVLFTILRKV-W-LFGGWKG 86 (191)
Q Consensus 34 ~~~f~I~D~~G~~vf~V~g~~~s---------~~--~k~~l~D~~G~~L~~i~~k~-~-~~~~~~v 86 (191)
.+-+.|+|++|+++.++.-+... .+ -...+.|.+|+.|++-|... . +.+.|+.
T Consensus 26 ~E~~~lvd~~~~~~G~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~ 91 (235)
T 2dho_A 26 AEMCILIDENDNKIGAETKKNCHLNENIEKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTN 91 (235)
T ss_dssp CCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEES
T ss_pred CcEEEEEcCCCCEEEEEEhHHhccccccCCCceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEe
Confidence 35699999999999998554321 11 13357899999888644332 2 5667874
No 8
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=33.38 E-value=45 Score=21.89 Aligned_cols=33 Identities=18% Similarity=0.105 Sum_probs=23.2
Q ss_pred eCC-CCEEEEEEecCCCCCceEEEEcCCC-CeEEEE
Q 042437 41 NEN-GEIVYRIDNYDNRGSNEVYLMDLRG-RVLFTI 74 (191)
Q Consensus 41 D~~-G~~vf~V~g~~~s~~~k~~l~D~~G-~~L~~i 74 (191)
|.+ |.....++++ |+.++.+.++-+.| +.-++|
T Consensus 16 ~~~~g~~~ie~rN~-f~~GD~iEi~~P~g~~~~~~v 50 (89)
T 4he6_A 16 DPETGIATVQQRNH-FRPGDEVEFFGPEIENFTQVI 50 (89)
T ss_dssp ETTTTEEEEEESSC-BCTTCEEEEESTTSCCEEEEC
T ss_pred eCCCCEEEEEEcCC-cCCCCEEEEEcCCCCcEEEEe
Confidence 444 6677777777 57788999999988 443444
No 9
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=31.83 E-value=44 Score=26.40 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=34.7
Q ss_pred CCCeEEEeCCCCEEEEEEecCCC--------C-C--ceEEEEcCCCCeEEEEEeee-e-ecceeEE
Q 042437 34 GNGCTVFNENGEIVYRIDNYDNR--------G-S--NEVYLMDLRGRVLFTILRKV-W-LFGGWKG 86 (191)
Q Consensus 34 ~~~f~I~D~~G~~vf~V~g~~~s--------~-~--~k~~l~D~~G~~L~~i~~k~-~-~~~~~~v 86 (191)
.+-+.|+|++|+++.++.-+... . + -...+.|.+|+.|++-|... . +.+.|..
T Consensus 37 ~E~~~lvd~~~~~iG~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~ 102 (246)
T 2pny_A 37 EEMLIVVDENDKVIGADTKRNCHLNENIEKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTD 102 (246)
T ss_dssp TCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCC
T ss_pred cceEEEEcCCCCEEEEEEhHHhccccccCCCcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEe
Confidence 35699999999999998655211 1 1 13357899998887644332 2 4567863
No 10
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=31.28 E-value=31 Score=24.77 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=32.6
Q ss_pred CCeEEEeCCCCEEEEEEecCC------CCCceEEEEcCCCCeEEEEEeeee--ecceeE
Q 042437 35 NGCTVFNENGEIVYRIDNYDN------RGSNEVYLMDLRGRVLFTILRKVW--LFGGWK 85 (191)
Q Consensus 35 ~~f~I~D~~G~~vf~V~g~~~------s~~~k~~l~D~~G~~L~~i~~k~~--~~~~~~ 85 (191)
.-+.|+|.+|+++..+.-... ...-...+.+.+|+.|+.-+...- +.+.|+
T Consensus 7 E~~~~~d~~~~~~g~~~r~~~~l~~~~~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~ 65 (171)
T 1q27_A 7 ERLDLVNERDEVVGQILRTDPALRWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALD 65 (171)
T ss_dssp SEEEEESSSSCEEEEEESSCTTSCTTSCEEEEEEEEETTTEEEECCSCCSSSCCCCSCC
T ss_pred eeeeeecCCCCEeceEEhhhhccccccceEEEEEEECCCCeEEEEEecCCCCCCCCccc
Confidence 458999999999998765543 112234567888876664332322 456786
No 11
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=30.92 E-value=11 Score=27.69 Aligned_cols=22 Identities=9% Similarity=-0.008 Sum_probs=13.0
Q ss_pred CCceEEEEcCCCCeEEEEEeee
Q 042437 57 GSNEVYLMDLRGRVLFTILRKV 78 (191)
Q Consensus 57 ~~~k~~l~D~~G~~L~~i~~k~ 78 (191)
.++++.|.+..+.-.+.+.+..
T Consensus 78 ~GD~i~v~~~~~~~~Y~V~~~~ 99 (147)
T 2ln7_A 78 EKDTLVLEYDNKTYTYEIQKIW 99 (147)
T ss_dssp TTCEEEEEETTEEEEEEEEEEE
T ss_pred CCCEEEEEECCcEEEEEEEeEE
Confidence 4666666666665555555544
No 12
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=30.10 E-value=38 Score=19.16 Aligned_cols=12 Identities=50% Similarity=0.703 Sum_probs=10.0
Q ss_pred eCCCCEEEEEEe
Q 042437 41 NENGEIVYRIDN 52 (191)
Q Consensus 41 D~~G~~vf~V~g 52 (191)
++||+.|+|.+.
T Consensus 28 NeNGntV~rC~~ 39 (39)
T 2h1z_A 28 NENGHTVYYCRA 39 (39)
T ss_dssp CSSCCEEEEEEC
T ss_pred ccCCCEEEeecC
Confidence 689999999863
No 13
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=27.85 E-value=63 Score=23.09 Aligned_cols=17 Identities=29% Similarity=0.194 Sum_probs=10.0
Q ss_pred ceEEEEcCCCCeEEEEE
Q 042437 59 NEVYLMDLRGRVLFTIL 75 (191)
Q Consensus 59 ~k~~l~D~~G~~L~~i~ 75 (191)
-++.|+|++|+.+-++.
T Consensus 39 v~v~I~d~~G~~V~t~~ 55 (138)
T 3osv_A 39 VWVNVYDDKGTVVNRIN 55 (138)
T ss_dssp EEEEEECTTSCEEEEEE
T ss_pred EEEEEEcCCCCEEEEEE
Confidence 34556666666666653
No 14
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=26.46 E-value=1.1e+02 Score=22.82 Aligned_cols=26 Identities=12% Similarity=-0.052 Sum_probs=13.5
Q ss_pred EEEcCCCCeEEEEEeee-e-ecceeEEE
Q 042437 62 YLMDLRGRVLFTILRKV-W-LFGGWKGY 87 (191)
Q Consensus 62 ~l~D~~G~~L~~i~~k~-~-~~~~~~v~ 87 (191)
.++|.+|+.|.+|..=. . -.+-|+|-
T Consensus 104 ~V~~~~g~~lG~V~~v~~~gandvl~V~ 131 (177)
T 3h9n_A 104 TVVNLEGYTMGTVTEMMETGSNDVLVVK 131 (177)
T ss_dssp EEEETTCCEEEEEEEEEESSSCEEEEEE
T ss_pred EEEeCCCCEEEEEEEEeeCCCcEEEEEE
Confidence 44566666666665533 2 34445543
No 15
>2vnl_A Bifunctional tail protein, PIIGCN4; chimera, hydrolase, late protein, viral protein, phage P22 tailspike protein, mutant Y108WDEL; 1.80A {Enterobacteria phage P22} PDB: 2vky_B
Probab=24.62 E-value=85 Score=23.27 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=36.0
Q ss_pred cccCcceEEEEEEeeeeEeCCCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEEEE
Q 042437 15 YVTSKRESFTIWMKSLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFTIL 75 (191)
Q Consensus 15 ~~~~~~~~l~vk~k~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~i~ 75 (191)
|.+++....+-......+...+|-| .+|+++-.+... ++.+.++|.+|..++.+-
T Consensus 49 y~~n~~g~~~qv~qPivin~ag~fv--~ng~l~~~vt~~----ghsmavYd~~Gaq~f~iP 103 (151)
T 2vnl_A 49 YIENEDGSHVQITQPLIINAAGKIV--YNGQLVKIVTVQ----GHSMAIYDANGSQVDYIA 103 (151)
T ss_dssp EEECTTSCEEEECSSEEECTTSCEE--ETTEECCEECCS----SCEEEEECTTSCEEEEES
T ss_pred EEecCCCceeeeecceeeecCCcee--eCCEEEEEeccC----CCcceEEecCCCceeeec
Confidence 5555555555555667776666666 367774444333 667899999999988763
No 16
>3fn5_A Sortase A; sortase-fold, hydrolase; HET: EPE; 1.50A {Streptococcus pyogenes serotype M1} PDB: 3fn6_A 3fn7_A
Probab=24.09 E-value=20 Score=27.53 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=12.3
Q ss_pred CCCeEEEeCCCCEEEEEEec
Q 042437 34 GNGCTVFNENGEIVYRIDNY 53 (191)
Q Consensus 34 ~~~f~I~D~~G~~vf~V~g~ 53 (191)
||.+.|.+.++...|+|+..
T Consensus 102 GD~I~v~~~~~~~~Y~V~~~ 121 (187)
T 3fn5_A 102 GMSIYLTDKEKIYEYIIKDV 121 (187)
T ss_dssp TCEEEEECSSEEEEEEEEEE
T ss_pred CCEEEEEECCeEEEEEEeeE
Confidence 45566666666666666654
No 17
>2kw8_A LPXTG-SITE transpeptidase family protein; sortase, SRTA, protein binding; NMR {Bacillus anthracis}
Probab=22.99 E-value=20 Score=26.47 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=11.2
Q ss_pred CceEEEEcCCCCeEEEEEee
Q 042437 58 SNEVYLMDLRGRVLFTILRK 77 (191)
Q Consensus 58 ~~k~~l~D~~G~~L~~i~~k 77 (191)
++.+.|.+..+.-.++|...
T Consensus 92 Gd~i~v~~~~~~~~Y~V~~~ 111 (158)
T 2kw8_A 92 GDKIYLYDNENEYEYAVTGV 111 (158)
T ss_dssp TCEEEEECSSEEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEEE
Confidence 56666666655545555443
No 18
>3oe3_A Putative periplasmic protein; beta barrel, hydrolase inhibitor; 1.51A {Salmonella enterica}
Probab=22.46 E-value=1.6e+02 Score=20.03 Aligned_cols=39 Identities=8% Similarity=0.105 Sum_probs=20.7
Q ss_pred eeeEeCCCeEEEeCCCCEEEEEEecCCCCCceEEEEcCCCCeEEE
Q 042437 29 SLVMQGNGCTVFNENGEIVYRIDNYDNRGSNEVYLMDLRGRVLFT 73 (191)
Q Consensus 29 ~~s~~~~~f~I~D~~G~~vf~V~g~~~s~~~k~~l~D~~G~~L~~ 73 (191)
..|=||-.|.--|.+|...++-+| ++-.|.|..|+|++.
T Consensus 46 v~SASGarY~~~~~~~~y~lwtKG------~eA~L~~~~g~~i~~ 84 (98)
T 3oe3_A 46 MKMASGANYEAIDKNYTYKLYTKG------KTAELVEGDDKPVLS 84 (98)
T ss_dssp EEC--CEEEEESSTTCCCEEEEET------TEEEEEETTTEEEEE
T ss_pred EEecCcceEEccCCCCcEEEEEeC------CcEEEEECCCCEEEc
Confidence 344444445444445555555444 456677777777764
No 19
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=20.67 E-value=1.6e+02 Score=21.02 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=34.0
Q ss_pred CCCeEEEeCCCCEEEEEEecCC------CCCceEEEEcCCCCeEEEEEeeee--ecceeEE
Q 042437 34 GNGCTVFNENGEIVYRIDNYDN------RGSNEVYLMDLRGRVLFTILRKVW--LFGGWKG 86 (191)
Q Consensus 34 ~~~f~I~D~~G~~vf~V~g~~~------s~~~k~~l~D~~G~~L~~i~~k~~--~~~~~~v 86 (191)
..-+.|+|.+|+++....-+.. ...-...+.|.+|+.|+.-|...- +.+.|+.
T Consensus 9 ~E~~~i~d~~~~~~g~~~r~~~~~~~~~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l 69 (180)
T 2fkb_A 9 TEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDA 69 (180)
T ss_dssp CCEEEEECTTSCEEEEEEHHHHHHHTCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEES
T ss_pred CeeEEEECCCCCEeeEEEHHHhhccCceeeEEEEEEECCCCEEEEEECCCCCccCCCcEEe
Confidence 3568999999999998864422 112345667889998874333221 3567864
No 20
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=20.47 E-value=2e+02 Score=19.19 Aligned_cols=16 Identities=6% Similarity=0.028 Sum_probs=7.6
Q ss_pred CCeEEEeCCCCEEEEEEe
Q 042437 35 NGCTVFNENGEIVYRIDN 52 (191)
Q Consensus 35 ~~f~I~D~~G~~vf~V~g 52 (191)
+++.+++. + .++.+.+
T Consensus 29 GnLvly~~-~-~~vW~sn 44 (109)
T 3dzw_A 29 CNLVLYDV-D-KPIWATN 44 (109)
T ss_dssp SCEEEEET-T-EEEEECC
T ss_pred CcEEEEeC-C-EEEEECC
Confidence 45566654 2 3444443
No 21
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=20.40 E-value=1.2e+02 Score=21.38 Aligned_cols=17 Identities=12% Similarity=0.215 Sum_probs=11.8
Q ss_pred eEEEEcCCCCeEEEEEe
Q 042437 60 EVYLMDLRGRVLFTILR 76 (191)
Q Consensus 60 k~~l~D~~G~~L~~i~~ 76 (191)
.+.|+|.+|++|..-..
T Consensus 45 Df~v~d~~G~~VwrwS~ 61 (120)
T 3isy_A 45 ELVVYDSEHKERYRYSK 61 (120)
T ss_dssp EEEEECTTCCEEEETTT
T ss_pred EEEEECCCCCEEEEccc
Confidence 67778877877775433
Done!