Query 042438
Match_columns 89
No_of_seqs 116 out of 1125
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 10:23:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042438.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042438hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 3.9E-36 1.4E-40 185.2 5.0 74 2-77 1-74 (77)
2 3p57_A Myocyte-specific enhanc 100.0 1.8E-35 6.3E-40 186.7 5.0 75 2-78 1-75 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 3.7E-34 1.3E-38 183.7 3.4 78 1-83 16-93 (100)
4 1hbx_A SRF, serum response fac 100.0 5.8E-34 2E-38 180.5 1.0 70 1-72 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 1.7E-33 5.6E-38 181.5 1.7 77 1-79 9-90 (103)
6 2ky6_A Mediator of RNA polymer 43.6 34 0.0012 23.1 4.2 40 36-75 116-161 (166)
7 2lja_A Putative thiol-disulfid 42.8 46 0.0016 19.7 4.5 40 44-83 111-150 (152)
8 3ia1_A THIO-disulfide isomeras 33.5 75 0.0026 18.8 4.4 35 44-78 112-146 (154)
9 3hcz_A Possible thiol-disulfid 33.3 52 0.0018 19.1 3.6 32 44-75 114-145 (148)
10 2l5o_A Putative thioredoxin; s 32.8 77 0.0026 18.6 5.1 33 44-76 109-141 (153)
11 2lx9_A Ferrous iron transport 29.4 80 0.0027 18.1 3.8 33 25-57 19-51 (83)
12 1m2d_A [2Fe-2S] ferredoxin; th 29.3 23 0.0008 21.3 1.5 26 45-72 65-90 (110)
13 2fgo_A Ferredoxin; allochromat 28.1 41 0.0014 18.4 2.3 28 50-77 54-81 (82)
14 2phn_A F420-0:gamma-glutamyl l 25.5 13 0.00044 26.6 -0.3 23 35-57 139-161 (254)
15 3rmq_A Uncharacterized protein 25.1 15 0.00051 23.4 -0.0 15 33-47 30-44 (116)
16 2k4y_A FEOA-like protein; GFT 24.4 1.1E+02 0.0036 17.5 3.8 32 26-57 25-56 (86)
17 2k5l_A FEOA; structure, NESG, 23.9 1E+02 0.0036 17.2 4.0 32 26-57 22-53 (81)
18 2lrn_A Thiol:disulfide interch 23.8 1.2E+02 0.004 18.0 4.0 30 44-73 112-141 (152)
19 1xvq_A Thiol peroxidase; thior 23.0 1.4E+02 0.0048 18.4 4.6 34 44-77 131-169 (175)
20 3raz_A Thioredoxin-related pro 21.9 1.3E+02 0.0045 17.7 4.8 38 44-81 108-145 (151)
21 3id6_A NOP5, PRE mRNA splicing 21.7 90 0.0031 22.3 3.5 41 40-81 8-49 (268)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=3.9e-36 Score=185.18 Aligned_cols=74 Identities=54% Similarity=0.895 Sum_probs=69.2
Q ss_pred CcccceeEEecCCCccchhhhhhhhhHHHhhHhhhccccccEEEEEeCCCCCceeeecCCCCHHHHHHHHHhhhCC
Q 042438 2 GRGKVELKRIENKTNRQVTFSKRKNGILKKAFELSVLCDAEIALVIFSPSGKAYHYASDHHTMDKIIARYRREVGQ 77 (89)
Q Consensus 2 gR~ki~ik~I~~~~~R~~tf~KRk~GL~KKa~ELs~LC~~~v~~iv~~~~g~~~~~~~~~~~~~~vl~ry~~~~~~ 77 (89)
||+||+|++|+|+++|++||+||++||+|||+|||+||||+||||||+++|++++|++ +++++||+||+..+++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s--~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCC--CCHHHHHHHHHhccCC
Confidence 8999999999999999999999999999999999999999999999999999999987 5799999999987653
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=1.8e-35 Score=186.73 Aligned_cols=75 Identities=53% Similarity=0.874 Sum_probs=71.5
Q ss_pred CcccceeEEecCCCccchhhhhhhhhHHHhhHhhhccccccEEEEEeCCCCCceeeecCCCCHHHHHHHHHhhhCCC
Q 042438 2 GRGKVELKRIENKTNRQVTFSKRKNGILKKAFELSVLCDAEIALVIFSPSGKAYHYASDHHTMDKIIARYRREVGQL 78 (89)
Q Consensus 2 gR~ki~ik~I~~~~~R~~tf~KRk~GL~KKa~ELs~LC~~~v~~iv~~~~g~~~~~~~~~~~~~~vl~ry~~~~~~~ 78 (89)
||+||+|++|+|+.+|++||+||++||||||+|||+||||+||||||+|+|++++|++ +++++||+||++.++..
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s--~~~~~il~rY~~~~~~~ 75 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEYNEPH 75 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHCCSCC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC--CCHHHHHHHHHhcCccc
Confidence 8999999999999999999999999999999999999999999999999999999987 68999999999976544
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=3.7e-34 Score=183.68 Aligned_cols=78 Identities=42% Similarity=0.632 Sum_probs=70.4
Q ss_pred CCcccceeEEecCCCccchhhhhhhhhHHHhhHhhhccccccEEEEEeCCCCCceeeecCCCCHHHHHHHHHhhhCCCCC
Q 042438 1 MGRGKVELKRIENKTNRQVTFSKRKNGILKKAFELSVLCDAEIALVIFSPSGKAYHYASDHHTMDKIIARYRREVGQLNS 80 (89)
Q Consensus 1 MgR~ki~ik~I~~~~~R~~tf~KRk~GL~KKa~ELs~LC~~~v~~iv~~~~g~~~~~~~~~~~~~~vl~ry~~~~~~~l~ 80 (89)
|||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||+|+|++|+|++| ++.+|+++|.. .++|
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sp--s~~~il~r~~G---~~lw 90 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP--KFEPIVTQQEG---RNLI 90 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECT--TTTHHHHSHHH---HHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCC--CHHHHHHHhhC---CcHH
Confidence 899999999999999999999999999999999999999999999999999999999985 56799887754 3555
Q ss_pred ccc
Q 042438 81 ADQ 83 (89)
Q Consensus 81 ~~~ 83 (89)
...
T Consensus 91 ~~c 93 (100)
T 1mnm_A 91 QAC 93 (100)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.97 E-value=5.8e-34 Score=180.49 Aligned_cols=70 Identities=40% Similarity=0.666 Sum_probs=66.4
Q ss_pred CCcccceeEEecCCCccchhhhhhhhhHHHhhHhhhccccccEEEEEeCCCCCceeeecCCCCHHHHHHHHH
Q 042438 1 MGRGKVELKRIENKTNRQVTFSKRKNGILKKAFELSVLCDAEIALVIFSPSGKAYHYASDHHTMDKIIARYR 72 (89)
Q Consensus 1 MgR~ki~ik~I~~~~~R~~tf~KRk~GL~KKa~ELs~LC~~~v~~iv~~~~g~~~~~~~~~~~~~~vl~ry~ 72 (89)
|||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||+|+|++|+|++ ++++++|++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s--~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEEC--GGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecC--CCHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999988 56788888664
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.97 E-value=1.7e-33 Score=181.51 Aligned_cols=77 Identities=36% Similarity=0.585 Sum_probs=69.5
Q ss_pred CCcccceeEEecCCCccchhhhhhhhhHHHhhHhhhccccccEEEEEeCCCCCceeeecCCCCHHHHHHH-----HHhhh
Q 042438 1 MGRGKVELKRIENKTNRQVTFSKRKNGILKKAFELSVLCDAEIALVIFSPSGKAYHYASDHHTMDKIIAR-----YRREV 75 (89)
Q Consensus 1 MgR~ki~ik~I~~~~~R~~tf~KRk~GL~KKa~ELs~LC~~~v~~iv~~~~g~~~~~~~~~~~~~~vl~r-----y~~~~ 75 (89)
|||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||+|+|++|+|++ ++++++|++ |...+
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s--~~~~~vi~~~~Gk~l~~~c 86 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSETGKALIQTC 86 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEEC--GGGGGGTSSHHHHHHHHHT
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecC--ccHHHHHHhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988 467888886 55555
Q ss_pred CCCC
Q 042438 76 GQLN 79 (89)
Q Consensus 76 ~~~l 79 (89)
....
T Consensus 87 ~~~~ 90 (103)
T 1k6o_B 87 LNSP 90 (103)
T ss_dssp TCC-
T ss_pred hcCC
Confidence 4443
No 6
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=43.58 E-value=34 Score=23.06 Aligned_cols=40 Identities=10% Similarity=0.301 Sum_probs=25.7
Q ss_pred hccccccEEEEEeCCCCCceeeecCCC------CHHHHHHHHHhhh
Q 042438 36 SVLCDAEIALVIFSPSGKAYHYASDHH------TMDKIIARYRREV 75 (89)
Q Consensus 36 s~LC~~~v~~iv~~~~g~~~~~~~~~~------~~~~vl~ry~~~~ 75 (89)
+.-|++.|-+++|+++.+.|.=-=|++ .+..||+.++..-
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~~q 161 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQVQ 161 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 345999999999999777655222222 3556666665543
No 7
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=42.81 E-value=46 Score=19.67 Aligned_cols=40 Identities=10% Similarity=0.197 Sum_probs=20.7
Q ss_pred EEEEeCCCCCceeeecCCCCHHHHHHHHHhhhCCCCCccc
Q 042438 44 ALVIFSPSGKAYHYASDHHTMDKIIARYRREVGQLNSADQ 83 (89)
Q Consensus 44 ~~iv~~~~g~~~~~~~~~~~~~~vl~ry~~~~~~~l~~~~ 83 (89)
.+++++++|+.........+.+++.+......+.+-..+|
T Consensus 111 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~~~~ 150 (152)
T 2lja_A 111 RFILLDRDGKIISANMTRPSDPKTAEKFNELLGLEGHHHH 150 (152)
T ss_dssp CEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTCCSSSSS
T ss_pred EEEEECCCCeEEEccCCCCCHHHHHHHHHHHhcccccccc
Confidence 3678888888655332223334444444444444444333
No 8
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=33.48 E-value=75 Score=18.76 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=19.3
Q ss_pred EEEEeCCCCCceeeecCCCCHHHHHHHHHhhhCCC
Q 042438 44 ALVIFSPSGKAYHYASDHHTMDKIIARYRREVGQL 78 (89)
Q Consensus 44 ~~iv~~~~g~~~~~~~~~~~~~~vl~ry~~~~~~~ 78 (89)
.+++++++|+.........+.+++.+...++....
T Consensus 112 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~ 146 (154)
T 3ia1_A 112 WTFVVDREGKVVALFAGRAGREALLDALLLAGADL 146 (154)
T ss_dssp EEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCcc
Confidence 46778888886543332235555555555554433
No 9
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=33.30 E-value=52 Score=19.15 Aligned_cols=32 Identities=9% Similarity=0.256 Sum_probs=22.0
Q ss_pred EEEEeCCCCCceeeecCCCCHHHHHHHHHhhh
Q 042438 44 ALVIFSPSGKAYHYASDHHTMDKIIARYRREV 75 (89)
Q Consensus 44 ~~iv~~~~g~~~~~~~~~~~~~~vl~ry~~~~ 75 (89)
.+++++++|....-......++++++.+.+..
T Consensus 114 ~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~l 145 (148)
T 3hcz_A 114 VLYVLDKNKVIIAKRIGYENLDDFLVQYEKSL 145 (148)
T ss_dssp EEEEECTTCBEEEESCCGGGHHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEecCCHHHHHHHHHHHHHHh
Confidence 46788888987544333367888888887653
No 10
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=32.77 E-value=77 Score=18.62 Aligned_cols=33 Identities=9% Similarity=0.102 Sum_probs=18.6
Q ss_pred EEEEeCCCCCceeeecCCCCHHHHHHHHHhhhC
Q 042438 44 ALVIFSPSGKAYHYASDHHTMDKIIARYRREVG 76 (89)
Q Consensus 44 ~~iv~~~~g~~~~~~~~~~~~~~vl~ry~~~~~ 76 (89)
.+++++++|+.........+.+++.+....+-.
T Consensus 109 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 141 (153)
T 2l5o_A 109 TSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWR 141 (153)
T ss_dssp EEEEECSSSCCCEEEESSCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 467888888864332323455555555555443
No 11
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=29.45 E-value=80 Score=18.07 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=27.6
Q ss_pred hhhHHHhhHhhhccccccEEEEEeCCCCCceee
Q 042438 25 KNGILKKAFELSVLCDAEIALVIFSPSGKAYHY 57 (89)
Q Consensus 25 k~GL~KKa~ELs~LC~~~v~~iv~~~~g~~~~~ 57 (89)
...+.++..+|-+..|+.|.|+-..|.|.+..+
T Consensus 19 ~~~~~rrL~~mGl~pG~~V~Vi~~ap~ggPi~v 51 (83)
T 2lx9_A 19 SPAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHI 51 (83)
T ss_dssp CHHHHHHHHHSSCCSSSEEEEEEECTTTCCEEE
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEeCCCCCcEEE
Confidence 356888999999999999999999987665554
No 12
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=29.32 E-value=23 Score=21.28 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=17.8
Q ss_pred EEEeCCCCCceeeecCCCCHHHHHHHHH
Q 042438 45 LVIFSPSGKAYHYASDHHTMDKIIARYR 72 (89)
Q Consensus 45 ~iv~~~~g~~~~~~~~~~~~~~vl~ry~ 72 (89)
|+|+ |+|..|...+| +++.++|+.+.
T Consensus 65 v~V~-P~~~~y~~vt~-e~v~~il~~~l 90 (110)
T 1m2d_A 65 VVVY-PDGVWYGQVKP-EDVDEIVEKHL 90 (110)
T ss_dssp EEEE-TTTEEECSCCG-GGHHHHHHHTT
T ss_pred EEEE-eCCEEEecCCH-HHHHHHHHHHH
Confidence 4455 77766665555 47899998864
No 13
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=28.10 E-value=41 Score=18.44 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=17.6
Q ss_pred CCCCceeeecCCCCHHHHHHHHHhhhCC
Q 042438 50 PSGKAYHYASDHHTMDKIIARYRREVGQ 77 (89)
Q Consensus 50 ~~g~~~~~~~~~~~~~~vl~ry~~~~~~ 77 (89)
|.+-......+..++++++++|..+.+.
T Consensus 54 P~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 81 (82)
T 2fgo_A 54 PVDCIPLDDANVESKDQLMEKYRKITGK 81 (82)
T ss_dssp TTCCCCBCTTSCCCHHHHHHHHHHHHCC
T ss_pred CcccEEccCCCccCHHHHHHHHHHhhcC
Confidence 6554433222225789999999887654
No 14
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=25.47 E-value=13 Score=26.61 Aligned_cols=23 Identities=13% Similarity=0.405 Sum_probs=18.0
Q ss_pred hhccccccEEEEEeCCCCCceee
Q 042438 35 LSVLCDAEIALVIFSPSGKAYHY 57 (89)
Q Consensus 35 Ls~LC~~~v~~iv~~~~g~~~~~ 57 (89)
|.-.+|++|+|||++++|+++..
T Consensus 139 l~~~~G~~v~ViI~Dt~gr~~r~ 161 (254)
T 2phn_A 139 ILELTGKRVGVIITDTNGRCFRR 161 (254)
T ss_dssp HHHHHSCCCEEEEEEEEEETTEE
T ss_pred HHHHHCCCEEEEEEcCCCchhhc
Confidence 45668999999999988865544
No 15
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=25.14 E-value=15 Score=23.43 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=11.6
Q ss_pred HhhhccccccEEEEE
Q 042438 33 FELSVLCDAEIALVI 47 (89)
Q Consensus 33 ~ELs~LC~~~v~~iv 47 (89)
.++.+|||++|..-.
T Consensus 30 ~~ftaLCG~~VTp~~ 44 (116)
T 3rmq_A 30 RPFTALCGETVTPQT 44 (116)
T ss_dssp CCEECTTSCEECCCG
T ss_pred CccccccCCeecCCC
Confidence 468899999987433
No 16
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=24.43 E-value=1.1e+02 Score=17.46 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=26.8
Q ss_pred hhHHHhhHhhhccccccEEEEEeCCCCCceee
Q 042438 26 NGILKKAFELSVLCDAEIALVIFSPSGKAYHY 57 (89)
Q Consensus 26 ~GL~KKa~ELs~LC~~~v~~iv~~~~g~~~~~ 57 (89)
..+.++..++-+..|++|.|+-.+|.|.+..+
T Consensus 25 ~~~~~rL~~mGl~pG~~V~V~~~~p~~gpi~v 56 (86)
T 2k4y_A 25 SKVRRKIMDMGIVRGTEIYIEGKAPMGDPIAL 56 (86)
T ss_dssp SSHHHHHHHHTCCTTCEEEEEEECTTSCSEEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEEeCCCCCCEEE
Confidence 56888999999999999999988886665554
No 17
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=23.90 E-value=1e+02 Score=17.23 Aligned_cols=32 Identities=13% Similarity=0.334 Sum_probs=26.8
Q ss_pred hhHHHhhHhhhccccccEEEEEeCCCCCceee
Q 042438 26 NGILKKAFELSVLCDAEIALVIFSPSGKAYHY 57 (89)
Q Consensus 26 ~GL~KKa~ELs~LC~~~v~~iv~~~~g~~~~~ 57 (89)
..+.++..++-+..|++|.|+-..|.|.+..+
T Consensus 22 ~~~~~rL~~lGl~pG~~v~V~~~~p~~gpi~v 53 (81)
T 2k5l_A 22 GALKRRIMDMGITRGCEIYIRKVAPLGDPIQI 53 (81)
T ss_dssp SHHHHHHHHHTCCTTCEEEEEEECTTSCCEEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEEeCCCCCCEEE
Confidence 56788999999999999999988886665554
No 18
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=23.76 E-value=1.2e+02 Score=17.95 Aligned_cols=30 Identities=10% Similarity=0.305 Sum_probs=17.4
Q ss_pred EEEEeCCCCCceeeecCCCCHHHHHHHHHh
Q 042438 44 ALVIFSPSGKAYHYASDHHTMDKIIARYRR 73 (89)
Q Consensus 44 ~~iv~~~~g~~~~~~~~~~~~~~vl~ry~~ 73 (89)
.+++++++|+......+...+.+.|+.+..
T Consensus 112 ~~~lid~~G~i~~~~~~~~~l~~~l~~l~~ 141 (152)
T 2lrn_A 112 HIILVDPEGKIVAKELRGDDLYNTVEKFVN 141 (152)
T ss_dssp EEEEECTTSEEEEECCCTTHHHHHHHHHHT
T ss_pred eEEEECCCCeEEEeeCCHHHHHHHHHHHHh
Confidence 467788888865432223445555555544
No 19
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=22.95 E-value=1.4e+02 Score=18.40 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=23.2
Q ss_pred EEEEeCCCCCcee-ee----cCCCCHHHHHHHHHhhhCC
Q 042438 44 ALVIFSPSGKAYH-YA----SDHHTMDKIIARYRREVGQ 77 (89)
Q Consensus 44 ~~iv~~~~g~~~~-~~----~~~~~~~~vl~ry~~~~~~ 77 (89)
..++++++|+... +. .+.+.++++|+.+.+.++.
T Consensus 131 ~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~~~~~~ 169 (175)
T 1xvq_A 131 AIVVIGADGNVAYTELVPEIAQEPNYEAALAALGATSGS 169 (175)
T ss_dssp EEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHHTC--
T ss_pred eEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHHhhcCc
Confidence 5788888998633 31 2345899999999877664
No 20
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=21.94 E-value=1.3e+02 Score=17.69 Aligned_cols=38 Identities=5% Similarity=-0.011 Sum_probs=19.0
Q ss_pred EEEEeCCCCCceeeecCCCCHHHHHHHHHhhhCCCCCc
Q 042438 44 ALVIFSPSGKAYHYASDHHTMDKIIARYRREVGQLNSA 81 (89)
Q Consensus 44 ~~iv~~~~g~~~~~~~~~~~~~~vl~ry~~~~~~~l~~ 81 (89)
.+++++++|+.........+.+++.+....+......+
T Consensus 108 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~~~~~ 145 (151)
T 3raz_A 108 FTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKCREG 145 (151)
T ss_dssp EEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC----
T ss_pred EEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHHhhcc
Confidence 36778888886443232335555555555554444433
No 21
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=21.70 E-value=90 Score=22.27 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=31.2
Q ss_pred cccEEEEEeCCCCCceeeecCCC-CHHHHHHHHHhhhCCCCCc
Q 042438 40 DAEIALVIFSPSGKAYHYASDHH-TMDKIIARYRREVGQLNSA 81 (89)
Q Consensus 40 ~~~v~~iv~~~~g~~~~~~~~~~-~~~~vl~ry~~~~~~~l~~ 81 (89)
..-++.+.|+++|++..|. |.+ +.++.++.....++....+
T Consensus 8 ~~~~G~~a~de~g~lv~f~-pF~~s~~~ale~~~~i~eG~~~~ 49 (268)
T 3id6_A 8 EHVIGAVAYDENGNIVDYI-TNPRDLGKITEELLNNEKGIPFS 49 (268)
T ss_dssp EETTEEEEECTTSCEEEEE-ECCSCHHHHHHHHHHHHHTCCCH
T ss_pred ecceeeEEECCCCCeeeec-CCCCCHHHHHHHHHHHhcCCCCH
Confidence 3456788999999999984 445 8899999988877665543
Done!