Query 042439
Match_columns 766
No_of_seqs 430 out of 3588
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 06:12:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.3E-40 7.1E-45 395.0 27.0 527 99-730 70-607 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.5E-39 3.2E-44 389.4 27.9 507 123-730 69-584 (968)
3 KOG0472 Leucine-rich repeat pr 99.9 3.4E-29 7.5E-34 241.9 -14.2 487 98-712 45-544 (565)
4 KOG4194 Membrane glycoprotein 99.9 4.5E-26 9.7E-31 230.4 4.0 338 328-729 81-428 (873)
5 KOG4194 Membrane glycoprotein 99.9 3.9E-26 8.4E-31 230.8 0.5 357 305-723 83-445 (873)
6 PLN03210 Resistant to P. syrin 99.9 4.4E-23 9.5E-28 246.9 25.1 358 54-554 549-910 (1153)
7 PLN03210 Resistant to P. syrin 99.9 1.8E-23 3.8E-28 250.3 20.8 316 325-712 589-911 (1153)
8 KOG0472 Leucine-rich repeat pr 99.9 4.1E-27 8.8E-32 227.6 -12.4 250 55-394 60-309 (565)
9 KOG0618 Serine/threonine phosp 99.9 2.2E-25 4.8E-30 237.6 -5.6 242 488-756 240-510 (1081)
10 KOG0444 Cytoskeletal regulator 99.9 1.8E-25 3.9E-30 227.4 -7.8 223 491-731 152-376 (1255)
11 KOG0618 Serine/threonine phosp 99.9 1.2E-25 2.7E-30 239.5 -10.7 126 489-618 359-486 (1081)
12 KOG0444 Cytoskeletal regulator 99.9 3E-24 6.4E-29 218.6 -6.8 251 358-688 126-380 (1255)
13 PRK15387 E3 ubiquitin-protein 99.6 2E-15 4.4E-20 167.7 16.3 257 358-706 201-457 (788)
14 PRK15387 E3 ubiquitin-protein 99.6 1.3E-14 2.8E-19 161.4 14.9 112 98-238 201-312 (788)
15 KOG4237 Extracellular matrix p 99.5 1.4E-15 3E-20 148.2 -0.4 256 295-596 86-357 (498)
16 KOG0617 Ras suppressor protein 99.5 1E-15 2.2E-20 131.7 -4.6 162 509-712 29-190 (264)
17 KOG4237 Extracellular matrix p 99.5 1.4E-15 3.1E-20 148.1 -4.7 277 90-394 61-358 (498)
18 PRK15370 E3 ubiquitin-protein 99.4 7.2E-13 1.6E-17 148.6 11.8 59 358-422 178-236 (754)
19 PRK15370 E3 ubiquitin-protein 99.4 1.9E-12 4.1E-17 145.3 12.7 181 514-729 242-427 (754)
20 KOG0617 Ras suppressor protein 99.3 3E-14 6.4E-19 122.7 -5.9 150 489-646 33-183 (264)
21 cd00116 LRR_RI Leucine-rich re 99.2 7.7E-13 1.7E-17 138.1 -2.0 158 489-646 51-231 (319)
22 cd00116 LRR_RI Leucine-rich re 99.1 5E-12 1.1E-16 131.9 -0.5 260 489-757 23-318 (319)
23 KOG4341 F-box protein containi 99.1 7.9E-12 1.7E-16 123.4 -2.5 90 124-221 139-231 (483)
24 KOG4341 F-box protein containi 99.0 1.3E-11 2.8E-16 122.0 -4.2 87 147-241 139-229 (483)
25 KOG4658 Apoptotic ATPase [Sign 98.9 1.9E-09 4E-14 123.5 5.0 63 358-421 571-634 (889)
26 KOG4658 Apoptotic ATPase [Sign 98.7 4.5E-09 9.8E-14 120.3 1.5 230 489-736 545-789 (889)
27 PF14580 LRR_9: Leucine-rich r 98.6 1.6E-08 3.4E-13 92.3 3.1 108 96-217 17-124 (175)
28 KOG3207 Beta-tubulin folding c 98.6 5.6E-09 1.2E-13 104.2 -0.3 138 560-705 196-337 (505)
29 KOG3207 Beta-tubulin folding c 98.6 1.1E-08 2.3E-13 102.3 0.3 109 144-262 119-235 (505)
30 KOG1259 Nischarin, modulator o 98.5 3.2E-08 7E-13 93.8 2.5 101 489-595 284-384 (490)
31 KOG1259 Nischarin, modulator o 98.5 6.6E-08 1.4E-12 91.7 2.6 126 561-706 284-411 (490)
32 PF14580 LRR_9: Leucine-rich r 98.5 6.5E-08 1.4E-12 88.3 1.9 128 512-645 18-149 (175)
33 KOG0532 Leucine-rich repeat (L 98.5 7.3E-09 1.6E-13 106.7 -4.7 188 493-727 79-270 (722)
34 PRK15386 type III secretion pr 98.5 8.6E-07 1.9E-11 91.0 10.1 94 509-617 48-141 (426)
35 PRK15386 type III secretion pr 98.4 1.1E-06 2.4E-11 90.2 10.3 132 452-617 51-186 (426)
36 KOG2120 SCF ubiquitin ligase, 98.4 2.4E-08 5.3E-13 94.6 -2.3 64 489-552 185-249 (419)
37 PLN03150 hypothetical protein; 98.4 5.8E-07 1.3E-11 101.1 7.6 109 491-599 420-529 (623)
38 COG4886 Leucine-rich repeat (L 98.4 2.7E-07 5.9E-12 99.1 4.8 170 513-704 116-287 (394)
39 COG4886 Leucine-rich repeat (L 98.3 5.3E-07 1.2E-11 96.9 5.1 193 516-729 96-289 (394)
40 KOG2120 SCF ubiquitin ligase, 98.2 3E-08 6.5E-13 94.0 -5.5 179 63-260 185-374 (419)
41 KOG1909 Ran GTPase-activating 98.2 1.6E-07 3.4E-12 91.6 -0.9 231 489-729 30-310 (382)
42 KOG1909 Ran GTPase-activating 98.2 2.5E-07 5.4E-12 90.2 -0.1 60 489-548 157-224 (382)
43 KOG0532 Leucine-rich repeat (L 98.2 4.3E-08 9.3E-13 101.2 -5.6 178 537-736 75-256 (722)
44 PLN03150 hypothetical protein; 98.1 3.1E-06 6.6E-11 95.4 6.5 89 514-602 419-507 (623)
45 PF13855 LRR_8: Leucine rich r 98.0 9.1E-06 2E-10 60.6 5.3 58 537-595 1-59 (61)
46 PF13855 LRR_8: Leucine rich r 98.0 4.5E-06 9.8E-11 62.2 2.8 57 514-572 2-60 (61)
47 KOG0531 Protein phosphatase 1, 97.8 3.3E-06 7.1E-11 90.8 -0.2 101 489-595 95-196 (414)
48 KOG1859 Leucine-rich repeat pr 97.6 4.9E-06 1.1E-10 88.8 -4.1 195 512-729 83-291 (1096)
49 KOG0531 Protein phosphatase 1, 97.5 1.8E-05 3.8E-10 85.2 -0.1 220 450-708 92-319 (414)
50 KOG1859 Leucine-rich repeat pr 97.5 6E-07 1.3E-11 95.5 -11.1 107 507-618 181-289 (1096)
51 KOG2982 Uncharacterized conser 97.5 2.2E-05 4.8E-10 75.0 0.1 190 511-712 69-267 (418)
52 KOG2982 Uncharacterized conser 97.4 5.5E-05 1.2E-09 72.4 1.3 203 485-700 67-285 (418)
53 KOG1947 Leucine rich repeat pr 97.3 1.6E-05 3.5E-10 88.2 -3.8 241 452-735 187-445 (482)
54 KOG1644 U2-associated snRNP A' 97.2 0.0006 1.3E-08 61.9 5.8 105 607-729 41-152 (233)
55 KOG3665 ZYG-1-like serine/thre 97.2 7.5E-05 1.6E-09 84.0 -0.5 172 25-216 75-260 (699)
56 PF12799 LRR_4: Leucine Rich r 97.1 0.00054 1.2E-08 46.5 3.4 41 670-712 1-41 (44)
57 PF12799 LRR_4: Leucine Rich r 97.1 0.00024 5.2E-09 48.3 1.6 34 99-134 2-35 (44)
58 KOG1644 U2-associated snRNP A' 97.0 0.00078 1.7E-08 61.2 4.3 95 90-188 56-152 (233)
59 COG5238 RNA1 Ran GTPase-activa 96.8 0.00043 9.3E-09 65.6 0.6 200 377-595 87-313 (388)
60 KOG1947 Leucine rich repeat pr 96.7 0.00017 3.6E-09 80.1 -3.1 62 671-732 352-416 (482)
61 COG5238 RNA1 Ran GTPase-activa 96.6 0.00094 2E-08 63.4 1.6 208 489-705 30-283 (388)
62 KOG3665 ZYG-1-like serine/thre 96.6 0.0012 2.6E-08 74.4 2.8 135 206-372 122-264 (699)
63 KOG4579 Leucine-rich repeat (L 96.0 0.00058 1.3E-08 57.8 -2.9 63 632-705 49-111 (177)
64 KOG2739 Leucine-rich acidic nu 95.9 0.0029 6.3E-08 60.2 1.1 83 510-595 40-126 (260)
65 KOG4579 Leucine-rich repeat (L 95.3 0.0016 3.5E-08 55.2 -2.8 102 491-595 29-133 (177)
66 KOG2123 Uncharacterized conser 95.0 0.0024 5.2E-08 60.9 -2.7 55 668-723 61-123 (388)
67 KOG2739 Leucine-rich acidic nu 94.6 0.025 5.5E-07 54.0 2.9 15 690-704 139-153 (260)
68 KOG2123 Uncharacterized conser 94.2 0.0018 4E-08 61.7 -5.7 80 99-187 20-99 (388)
69 PF13306 LRR_5: Leucine rich r 93.8 0.25 5.3E-06 43.2 7.4 35 533-569 31-66 (129)
70 KOG3864 Uncharacterized conser 93.6 0.013 2.8E-07 53.6 -1.2 86 123-217 101-187 (221)
71 PF13306 LRR_5: Leucine rich r 93.3 0.32 6.9E-06 42.4 7.3 79 509-594 31-112 (129)
72 KOG3864 Uncharacterized conser 90.8 0.031 6.7E-07 51.2 -2.3 81 562-645 102-185 (221)
73 PF00560 LRR_1: Leucine Rich R 90.6 0.17 3.7E-06 28.3 1.4 10 563-572 2-11 (22)
74 PF13504 LRR_7: Leucine rich r 90.4 0.17 3.7E-06 26.3 1.2 10 695-704 2-11 (17)
75 PF00560 LRR_1: Leucine Rich R 90.3 0.16 3.5E-06 28.4 1.1 19 360-379 2-20 (22)
76 smart00367 LRR_CC Leucine-rich 79.7 1.2 2.6E-05 26.0 1.4 16 694-709 2-17 (26)
77 smart00370 LRR Leucine-rich re 76.9 1.4 3E-05 25.7 1.1 20 98-117 2-21 (26)
78 smart00369 LRR_TYP Leucine-ric 76.9 1.4 3E-05 25.7 1.1 20 98-117 2-21 (26)
79 smart00364 LRR_BAC Leucine-ric 54.1 8.2 0.00018 22.6 1.1 15 696-711 4-18 (26)
80 KOG4308 LRR-containing protein 54.1 0.16 3.5E-06 55.0 -10.8 106 491-596 89-215 (478)
81 PF13516 LRR_6: Leucine Rich r 47.0 14 0.0003 20.9 1.4 12 382-393 2-13 (24)
82 KOG3763 mRNA export factor TAP 43.9 6.1 0.00013 42.5 -0.7 67 121-191 216-285 (585)
83 KOG4308 LRR-containing protein 33.4 1.1 2.3E-05 48.8 -8.5 275 450-732 112-447 (478)
84 smart00365 LRR_SD22 Leucine-ri 32.4 25 0.00053 20.7 0.9 12 123-134 2-13 (26)
85 PF05725 FNIP: FNIP Repeat; I 27.7 78 0.0017 21.2 2.9 32 694-726 12-43 (44)
86 KOG3763 mRNA export factor TAP 25.5 30 0.00065 37.5 0.8 11 452-462 217-227 (585)
87 smart00368 LRR_RI Leucine rich 25.0 41 0.0009 20.0 1.0 11 124-134 3-13 (28)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.3e-40 Score=394.98 Aligned_cols=527 Identities=17% Similarity=0.164 Sum_probs=344.8
Q ss_pred CcceEEEEecCCC-CCCccccCCCCCCeeEEEEecCCCCCCCCC--CCCcCcccceeecCCCCceecCcccccCCCCCCC
Q 042439 99 ILEQFCISGYGGT-KFPAWLGDSSLPNLVTLKFENCDMCTALPS--VGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPF 175 (766)
Q Consensus 99 ~L~~L~l~~~~~~-~lp~~~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 175 (766)
+++.|+++++.+. .+|..+ ..+++|++|+|++|.+.+.+|. +..+++|++|++++|+.... .|...+
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~--~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~--------~p~~~l 139 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAI--FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS--------IPRGSI 139 (968)
T ss_pred cEEEEEecCCCccccCChHH--hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccc--------cCcccc
Confidence 5666666655433 223333 3466666666666665555553 34666666666665442222 122225
Q ss_pred CCccEEeccCccchhhhhccCCCccccccCcccceecccccccccCCCCC---CCCCccEEEEecCCC---cccccCCCC
Q 042439 176 PCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKGPFPE---HLPALEMLVIEGCEE---LSVSVSSLP 249 (766)
Q Consensus 176 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~---l~~~~~~~~ 249 (766)
++|++|++++|..... .+..++.+++|++|++++|. +.+.+|. .+++|++|++++|.. +...++.++
T Consensus 140 ~~L~~L~Ls~n~~~~~------~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 212 (968)
T PLN00113 140 PNLETLDLSNNMLSGE------IPNDIGSFSSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212 (968)
T ss_pred CCCCEEECcCCccccc------CChHHhcCCCCCEEECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcC
Confidence 6666666666653211 34455566666666666653 4434553 355666666666652 223455667
Q ss_pred ccceEEEcCCCCceeeccccccCCCCceeeccCCccccccCCCCCCCCCccEEEecccCCccchhcccCccccCCCCCCE
Q 042439 250 ALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLKPQLPKLEELEINDMKEHTYIWKSHNGLLQDSCSLKR 329 (766)
Q Consensus 250 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~L~~ 329 (766)
+|+.|++++|. +.+.+|..+.++++|+.++++++.... ..+..+..+++|++
T Consensus 213 ~L~~L~L~~n~---------------------------l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~ 264 (968)
T PLN00113 213 SLKWIYLGYNN---------------------------LSGEIPYEIGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQY 264 (968)
T ss_pred CccEEECcCCc---------------------------cCCcCChhHhcCCCCCEEECcCceecc-ccChhHhCCCCCCE
Confidence 77777777665 334445455555555555555554422 22345677778888
Q ss_pred EEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCC-CCCCCCcc
Q 042439 330 LTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPE-VALPSKLR 408 (766)
Q Consensus 330 L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~l~~L~ 408 (766)
|+++++.....++.. +.. +++|++|++++|.+.+.+|..+.++++|++|++++|...+.+|. ...+++|+
T Consensus 265 L~L~~n~l~~~~p~~-----l~~----l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 335 (968)
T PLN00113 265 LFLYQNKLSGPIPPS-----IFS----LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335 (968)
T ss_pred EECcCCeeeccCchh-----Hhh----ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCC
Confidence 888776433333221 112 26888888888887777777778888888888888876665553 44578888
Q ss_pred eEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCC
Q 042439 409 KIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLP 488 (766)
Q Consensus 409 ~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~ 488 (766)
.|++++|.....+|.. +..+++|+.|++++|.--. .+|..+..+
T Consensus 336 ~L~L~~n~l~~~~p~~------------------------l~~~~~L~~L~Ls~n~l~~------~~p~~~~~~------ 379 (968)
T PLN00113 336 VLQLWSNKFSGEIPKN------------------------LGKHNNLTVLDLSTNNLTG------EIPEGLCSS------ 379 (968)
T ss_pred EEECcCCCCcCcCChH------------------------HhCCCCCcEEECCCCeeEe------eCChhHhCc------
Confidence 8888887765555543 2335678888888764211 122222221
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEe
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRI 568 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 568 (766)
++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++
T Consensus 380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence 67888888888888788888888888888888888877777888888888888888888777777766677888888888
Q ss_pred ccCcCccccCccCCCCCCCCeeEecCCCCCCCCCC-CCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccC
Q 042439 569 HGCERLEALPKGLHNLTSLQELTIGRGVELPSLEE-DGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCD 647 (766)
Q Consensus 569 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 647 (766)
++|.+.+.+|..+ ..++|+.|++++|.....++. ...+++|++|++++| ......|..+..+++|+.|++++|.
T Consensus 460 ~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N----~l~~~~p~~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 460 ARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN----KLSGEIPDELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred cCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCC----cceeeCChHHcCccCCCEEECCCCc
Confidence 8888887777654 457888888888876555443 356788888888885 2333445557888899999998863
Q ss_pred CCCccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCCCCcccccceeeecCC
Q 042439 648 DDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPEKGLPSSLLQLYIGGC 727 (766)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~~ 727 (766)
....+|..+ ..+++|+.|++++|+....+|..+..+++|+++++++|+....+|..+.+.++....+.+|
T Consensus 535 -l~~~~p~~~---------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n 604 (968)
T PLN00113 535 -LSGQIPASF---------SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGN 604 (968)
T ss_pred -ccccCChhH---------hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCC
Confidence 334555544 4678899999998655557888888889999999999888788887665556666666666
Q ss_pred hhH
Q 042439 728 PLI 730 (766)
Q Consensus 728 ~~l 730 (766)
+.+
T Consensus 605 ~~l 607 (968)
T PLN00113 605 IDL 607 (968)
T ss_pred ccc
Confidence 643
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-39 Score=389.40 Aligned_cols=507 Identities=18% Similarity=0.172 Sum_probs=403.7
Q ss_pred CCeeEEEEecCCCCCCCCC-CCCcCcccceeecCCCCceecCcccccCCCCCCCCCccEEeccCccchhhhhccCCCccc
Q 042439 123 PNLVTLKFENCDMCTALPS-VGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCLETLIFENMREWEDWISHGSSQRV 201 (766)
Q Consensus 123 ~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 201 (766)
.+++.|+|++|.+.+.++. +..+++|++|++++|.....++..... .+++|++|++++|..... ++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~-----~l~~L~~L~Ls~n~l~~~------~p-- 135 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT-----TSSSLRYLNLSNNNFTGS------IP-- 135 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhc-----cCCCCCEEECcCCccccc------cC--
Confidence 5799999999987777764 899999999999997643344444332 289999999999975422 22
Q ss_pred cccCcccceecccccccccCCCCC---CCCCccEEEEecCCC---cccccCCCCccceEEEcCCCCceeeccccccCCCC
Q 042439 202 VEGFPKLRELHILRCSKLKGPFPE---HLPALEMLVIEGCEE---LSVSVSSLPALCKLQIGGCKKVVWESATGHLGSQN 275 (766)
Q Consensus 202 ~~~l~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 275 (766)
.+.+++|++|++++|. +.+.+|. .+++|++|++++|.. +...+..+++|+.|++++|.
T Consensus 136 ~~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~--------------- 199 (968)
T PLN00113 136 RGSIPNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ--------------- 199 (968)
T ss_pred ccccCCCCEEECcCCc-ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC---------------
Confidence 2468999999998885 6657774 578999999999873 34467789999999999987
Q ss_pred ceeeccCCccccccCCCCCCCCCccEEEecccCCccchhcccCccccCCCCCCEEEEccCCCccccchhhhHHHHhhhhh
Q 042439 276 SVVCRDASNQVFLAGPLKPQLPKLEELEINDMKEHTYIWKSHNGLLQDSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCE 355 (766)
Q Consensus 276 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~ 355 (766)
+.+.+|..+.++++|+.++++++...+.. +..+..+++|++|++++|.....++.. +..
T Consensus 200 ------------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~-----l~~--- 258 (968)
T PLN00113 200 ------------LVGQIPRELGQMKSLKWIYLGYNNLSGEI-PYEIGGLTSLNHLDLVYNNLTGPIPSS-----LGN--- 258 (968)
T ss_pred ------------CcCcCChHHcCcCCccEEECcCCccCCcC-ChhHhcCCCCCEEECcCceeccccChh-----HhC---
Confidence 44556777777888887778777763333 345788999999999987543333322 222
Q ss_pred ccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCC-CCCCCCcceEEEccCCCCCccccccccCcchhHH
Q 042439 356 LSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPE-VALPSKLRKIEICSCDALKSLPEAWMCDTNSSLE 434 (766)
Q Consensus 356 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 434 (766)
+++|++|++++|.+.+.+|..+.++++|++|++++|.....+|. ...+++|+.|++++|...+.+|..
T Consensus 259 -l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~---------- 327 (968)
T PLN00113 259 -LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA---------- 327 (968)
T ss_pred -CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh----------
Confidence 27999999999998888888899999999999999977666664 456889999999998866655543
Q ss_pred HHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCC
Q 042439 435 ILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTS 514 (766)
Q Consensus 435 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 514 (766)
+..+++|+.|++++|.-. +.+|..+..+ ++|+.|++++|.....+|..+..+++
T Consensus 328 --------------~~~l~~L~~L~L~~n~l~------~~~p~~l~~~------~~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 328 --------------LTSLPRLQVLQLWSNKFS------GEIPKNLGKH------NNLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred --------------HhcCCCCCEEECcCCCCc------CcCChHHhCC------CCCcEEECCCCeeEeeCChhHhCcCC
Confidence 345789999999997522 2234333333 78999999999998889998999999
Q ss_pred CCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecC
Q 042439 515 LETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGR 594 (766)
Q Consensus 515 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 594 (766)
|+.|++++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 99999999998888999999999999999999988788888888999999999999999999988888999999999999
Q ss_pred CCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccce
Q 042439 595 GVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTS 674 (766)
Q Consensus 595 ~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 674 (766)
|.....++.....++|+.|++++|. .....|..+..+++|+.|++++|. ....+|+.+ ..+++|+.
T Consensus 462 n~~~~~~p~~~~~~~L~~L~ls~n~----l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~---------~~l~~L~~ 527 (968)
T PLN00113 462 NKFFGGLPDSFGSKRLENLDLSRNQ----FSGAVPRKLGSLSELMQLKLSENK-LSGEIPDEL---------SSCKKLVS 527 (968)
T ss_pred ceeeeecCcccccccceEEECcCCc----cCCccChhhhhhhccCEEECcCCc-ceeeCChHH---------cCccCCCE
Confidence 9887777776667899999999962 233445558899999999999963 344667665 36789999
Q ss_pred EEeccCCCCccchhhhccCCCcceeecccCcCcccCCCC-CcccccceeeecCChhH
Q 042439 675 LLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPEK-GLPSSLLQLYIGGCPLI 730 (766)
Q Consensus 675 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~~~~l 730 (766)
|++++|.-...+|..+..+++|++|++++|+....+|.. .-+++|++|++++|+..
T Consensus 528 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred EECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 999996555578889999999999999998877788872 33789999999999754
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=3.4e-29 Score=241.91 Aligned_cols=487 Identities=19% Similarity=0.215 Sum_probs=267.5
Q ss_pred CCcceEEEEecCCCCCCccccCCCCCCeeEEEEecCCCCCCCCCCCCcCcccceeecCCCCceecCcccccCCCCCCCCC
Q 042439 98 EILEQFCISGYGGTKFPAWLGDSSLPNLVTLKFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPC 177 (766)
Q Consensus 98 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 177 (766)
..|..|.++.|....+...+ ..+..|++|++.+|...+.+|+++.+..++.|+++.++ +..++.+... .++
T Consensus 45 v~l~~lils~N~l~~l~~dl--~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s------~~~ 115 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDL--KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGS------LIS 115 (565)
T ss_pred cchhhhhhccCchhhccHhh--hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhh------hhh
Confidence 34555555555555444433 34555666666666544444445666666666665532 3333332222 455
Q ss_pred ccEEeccCccchhhhhccCCCccccccCcccceecccccccccCCCCCC---CCCccEEEEecCCCcc--cccCCCCccc
Q 042439 178 LETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKGPFPEH---LPALEMLVIEGCEELS--VSVSSLPALC 252 (766)
Q Consensus 178 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~---l~~L~~L~l~~~~~l~--~~~~~~~~L~ 252 (766)
|+.|+.+.+...+ .+..++.+..|+.++-.+++ +. .+|.. +.++..+++.++.... ...-.+..|+
T Consensus 116 l~~l~~s~n~~~e-------l~~~i~~~~~l~dl~~~~N~-i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 116 LVKLDCSSNELKE-------LPDSIGRLLDLEDLDATNNQ-IS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLK 186 (565)
T ss_pred hhhhhccccceee-------cCchHHHHhhhhhhhccccc-cc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHH
Confidence 5555555554432 34444555555555554442 33 44432 2333344444433111 1111155566
Q ss_pred eEEEcCCCCceeeccccccCCCCceeeccCCccccccCCCCCCCCCccEEEecccCCccchhcccCccccCCCCCCEEEE
Q 042439 253 KLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLKPQLPKLEELEINDMKEHTYIWKSHNGLLQDSCSLKRLTI 332 (766)
Q Consensus 253 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l 332 (766)
+|+...| .-+.+|+.++.+++|..+++..+++. ....|.++..|++|++
T Consensus 187 ~ld~~~N----------------------------~L~tlP~~lg~l~~L~~LyL~~Nki~---~lPef~gcs~L~Elh~ 235 (565)
T KOG0472|consen 187 HLDCNSN----------------------------LLETLPPELGGLESLELLYLRRNKIR---FLPEFPGCSLLKELHV 235 (565)
T ss_pred hcccchh----------------------------hhhcCChhhcchhhhHHHHhhhcccc---cCCCCCccHHHHHHHh
Confidence 5555444 34668889999999999999999982 2336888999999988
Q ss_pred ccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCCCCCCCCcceEEE
Q 042439 333 ASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPEVALPSKLRKIEI 412 (766)
Q Consensus 333 ~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~l 412 (766)
+.. .++.++++- ... .+++..||+++|. +...|..+.-+++|.+||+++|....--+..+.+ +|+.|.+
T Consensus 236 g~N-~i~~lpae~----~~~----L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~l 304 (565)
T KOG0472|consen 236 GEN-QIEMLPAEH----LKH----LNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLAL 304 (565)
T ss_pred ccc-HHHhhHHHH----hcc----cccceeeeccccc-cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhh
Confidence 873 455555432 222 3899999999999 6889999999999999999999554444467777 9999999
Q ss_pred ccCCCCCccccccccCcchhHH-HHHHh----ccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCC
Q 042439 413 CSCDALKSLPEAWMCDTNSSLE-ILMEE----GIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNL 487 (766)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~~~~~-~l~~~----~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~ 487 (766)
.+|+ +..+...+.......+. ++... |+.....+.-... + . +...++.. ..
T Consensus 305 eGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~------t---------~-~~~~~~~~-------~~ 360 (565)
T KOG0472|consen 305 EGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM------T---------L-PSESFPDI-------YA 360 (565)
T ss_pred cCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC------C---------C-CCCcccch-------hh
Confidence 9998 44444433332233322 23221 1111100000000 0 0 11111110 00
Q ss_pred CCCcceeeecCCCchhhhHhh-cCC--CCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcc
Q 042439 488 PPSLKSLHVLSCSKLESIAER-LDN--NTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLS 564 (766)
Q Consensus 488 ~~~L~~L~l~~~~~~~~~~~~-~~~--l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~ 564 (766)
.-+.+.|++++-.. +.+|.. |.. -.-....+++.|+ +.++|..+..+..+.+.-+..++.+..+|..+..+++|.
T Consensus 361 ~i~tkiL~~s~~ql-t~VPdEVfea~~~~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt 438 (565)
T KOG0472|consen 361 IITTKILDVSDKQL-TLVPDEVFEAAKSEIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLT 438 (565)
T ss_pred hhhhhhhccccccc-ccCCHHHHHHhhhcceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcce
Confidence 13345555554332 223322 111 1125566666663 555666655555555544444445555555556666666
Q ss_pred eEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEe
Q 042439 565 KLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRIS 644 (766)
Q Consensus 565 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~ 644 (766)
-|++++|. +..+|..++.+..|+.|+++.|. ...+|.. +..+.-++.+-.+
T Consensus 439 ~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~---------------------------~y~lq~lEtllas 489 (565)
T KOG0472|consen 439 FLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNR-FRMLPEC---------------------------LYELQTLETLLAS 489 (565)
T ss_pred eeecccch-hhhcchhhhhhhhhheecccccc-cccchHH---------------------------HhhHHHHHHHHhc
Confidence 66666654 45566666666666666666662 2222211 2222223333333
Q ss_pred ccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCC
Q 042439 645 GCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPE 712 (766)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 712 (766)
+| .+..+++.. ...+.+|.+|++.+ +.+..+|+.++++++|++|++++||.- .|.
T Consensus 490 ~n--qi~~vd~~~--------l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 490 NN--QIGSVDPSG--------LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred cc--cccccChHH--------hhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCccC--CCH
Confidence 33 444454431 13556677777776 688888888899999999999997643 454
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=4.5e-26 Score=230.36 Aligned_cols=338 Identities=18% Similarity=0.196 Sum_probs=166.9
Q ss_pred CEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccC--CCCCCC
Q 042439 328 KRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFP--EVALPS 405 (766)
Q Consensus 328 ~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~l~ 405 (766)
+.|++++ +++.++....+ .++ ++|+.+++..|. +..+|.......+|+.|+|.+|. +.++. ....++
T Consensus 81 ~~Ldlsn-Nkl~~id~~~f----~nl----~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~ 149 (873)
T KOG4194|consen 81 QTLDLSN-NKLSHIDFEFF----YNL----PNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALP 149 (873)
T ss_pred eeeeccc-cccccCcHHHH----hcC----Ccceeeeeccch-hhhcccccccccceeEEeeeccc-cccccHHHHHhHh
Confidence 4466666 34544433322 112 666666666666 45566544444556666666663 22222 234466
Q ss_pred CcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCcccccccccc
Q 042439 406 KLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVG 485 (766)
Q Consensus 406 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~ 485 (766)
.|++||++.|. +..+ ....+..-.++++|+++++ .++.+ ..+.|.+.
T Consensus 150 alrslDLSrN~-is~i-----------------------~~~sfp~~~ni~~L~La~N-~It~l-~~~~F~~l------- 196 (873)
T KOG4194|consen 150 ALRSLDLSRNL-ISEI-----------------------PKPSFPAKVNIKKLNLASN-RITTL-ETGHFDSL------- 196 (873)
T ss_pred hhhhhhhhhch-hhcc-----------------------cCCCCCCCCCceEEeeccc-ccccc-cccccccc-------
Confidence 66666666654 2333 3333344456666666663 45544 44444432
Q ss_pred CCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCC-CCCCCCCcc
Q 042439 486 NLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPE-GGLPCAKLS 564 (766)
Q Consensus 486 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~ 564 (766)
.+|..|.++.|.....-+..|.++++|+.|++..|.+-..--..|..+++|+.|.+..|.. ..+.+ .+..+.+++
T Consensus 197 ---nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I-~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 197 ---NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI-SKLDDGAFYGLEKME 272 (873)
T ss_pred ---chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc-ccccCcceeeecccc
Confidence 4566666666666555556666666666666666642211122445566666666666532 33332 333455566
Q ss_pred eEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCC-CCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEE
Q 042439 565 KLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEED-GLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRI 643 (766)
Q Consensus 565 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l 643 (766)
+|++..|.....-..++.++++|+.|++++|..-..-++. .+.+.|++|++++| .+....+. .|..+..|++|.+
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N--~i~~l~~~--sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN--RITRLDEG--SFRVLSQLEELNL 348 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc--ccccCChh--HHHHHHHhhhhcc
Confidence 6666665544433445555566666666555322111111 34455566666554 12211111 1555555555555
Q ss_pred eccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCc-cchh---hhccCCCcceeecccCcCcccCCCCCc--cc
Q 042439 644 SGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLE-RLSS---SIVDLQNLTELYLEDCPKLKYFPEKGL--PS 717 (766)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~---~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~ 717 (766)
++| .+.++-+.. +..+.+|+.|++++ |.+. .|.+ .+..+++|++|.+.+ ++++++|...+ ++
T Consensus 349 s~N--si~~l~e~a--------f~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~ 416 (873)
T KOG4194|consen 349 SHN--SIDHLAEGA--------FVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLE 416 (873)
T ss_pred ccc--chHHHHhhH--------HHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCc
Confidence 554 233332221 23445555555555 3333 1211 344455555555555 34555555333 45
Q ss_pred ccceeeecCChh
Q 042439 718 SLLQLYIGGCPL 729 (766)
Q Consensus 718 ~L~~L~i~~~~~ 729 (766)
+|+.||+.+|+.
T Consensus 417 ~LE~LdL~~Nai 428 (873)
T KOG4194|consen 417 ALEHLDLGDNAI 428 (873)
T ss_pred ccceecCCCCcc
Confidence 555555555544
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=3.9e-26 Score=230.79 Aligned_cols=357 Identities=15% Similarity=0.132 Sum_probs=227.6
Q ss_pred cccCCccchhcccCccccCCCCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCc
Q 042439 305 NDMKEHTYIWKSHNGLLQDSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSL 384 (766)
Q Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L 384 (766)
+++++|+. ..+....|..+++|+++++.. +.++.+|.... ...+|+.|+|.+|.+...-...+..++.|
T Consensus 83 LdlsnNkl-~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~---------~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 83 LDLSNNKL-SHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGH---------ESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred eecccccc-ccCcHHHHhcCCcceeeeecc-chhhhcccccc---------cccceeEEeeeccccccccHHHHHhHhhh
Confidence 45555654 445667789999999999998 46777765432 22579999999999776666677889999
Q ss_pred cEEEecCCCCCcccCCCCC--CCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecC
Q 042439 385 REIEIYGCWSLVSFPEVAL--PSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIES 462 (766)
Q Consensus 385 ~~L~L~~~~~l~~~~~~~~--l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 462 (766)
+.|||+.| .+..++...+ -.++++|++++|..-..-...|......-.+.|+.|++...+...|.++++|+.|++..
T Consensus 152 rslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 152 RSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence 99999998 5666664444 46899999999885444344444444444556777777777777788888888888776
Q ss_pred CCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEE
Q 042439 463 CRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEI 542 (766)
Q Consensus 463 c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L 542 (766)
+ .++.+ ..-.|.+- ++|+.|.+..|.....-.+.|..+.++++|+++.|+....-..++.++++|+.|
T Consensus 231 N-~iriv-e~ltFqgL----------~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 231 N-RIRIV-EGLTFQGL----------PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL 298 (873)
T ss_pred c-ceeee-hhhhhcCc----------hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhh
Confidence 3 34333 22233332 667777777777666666667777788888888776444445566777888888
Q ss_pred EecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCC--CCCCCcceeEeccccc
Q 042439 543 SIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEED--GLPTNLHSLWIAGNME 620 (766)
Q Consensus 543 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~N~~ 620 (766)
++++|.+...-+..+.-+++|++|++++|.+...-+..+..+..|++|.+++| .+..+.+. ..+++|++||+++|-.
T Consensus 299 ~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 299 DLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred ccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 88877555555556666777888888777766555566677777777777776 23333222 2345555555555421
Q ss_pred cchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCccee
Q 042439 621 IWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTEL 699 (766)
Q Consensus 621 ~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L 699 (766)
.+.+.. ....|.+ +++|+.|.+.+ |+++.||. .+.+++.|++|
T Consensus 378 s~~IED-aa~~f~g----------------------------------l~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 378 SWCIED-AAVAFNG----------------------------------LPSLRKLRLTG-NQLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred EEEEec-chhhhcc----------------------------------chhhhheeecC-ceeeecchhhhccCccccee
Confidence 111111 1111333 45555555555 56666666 66667777777
Q ss_pred ecccCcCcccCCCCCc-ccccceee
Q 042439 700 YLEDCPKLKYFPEKGL-PSSLLQLY 723 (766)
Q Consensus 700 ~l~~c~~l~~l~~~~~-~~~L~~L~ 723 (766)
++.+|. +.++....+ +-.|++|.
T Consensus 422 dL~~Na-iaSIq~nAFe~m~Lk~Lv 445 (873)
T KOG4194|consen 422 DLGDNA-IASIQPNAFEPMELKELV 445 (873)
T ss_pred cCCCCc-ceeecccccccchhhhhh
Confidence 777643 444443333 33555553
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4.4e-23 Score=246.92 Aligned_cols=358 Identities=22% Similarity=0.354 Sum_probs=241.8
Q ss_pred hhhhccCCCCCCCceEEEecCCCCCCCccchhhHHHHhhcCCCC-CCcceEEEEecCCCCCCccccCCCCCCeeEEEEec
Q 042439 54 AKEAQLDGKKNLRELLLRWALNTDGSSSREAKTENDVLDMLKPH-EILEQFCISGYGGTKFPAWLGDSSLPNLVTLKFEN 132 (766)
Q Consensus 54 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~ 132 (766)
....+|.++++|+.|.+..+.. .........+++.+..+ ++|+.|.+.++....+|.++ .+.+|+.|++.+
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~-----~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f---~~~~L~~L~L~~ 620 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKW-----DQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF---RPENLVKLQMQG 620 (1153)
T ss_pred ecHHHHhcCccccEEEEecccc-----cccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC---CccCCcEEECcC
Confidence 3445688999999999854321 00001111234445443 57999999999999999887 468999999999
Q ss_pred CCCCCCCC-CCCCcCcccceeecCCCCceecCcccccCCCCCCCCCccEEeccCccchhhhhccCCCccccccCccccee
Q 042439 133 CDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCLETLIFENMREWEDWISHGSSQRVVEGFPKLREL 211 (766)
Q Consensus 133 ~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L 211 (766)
|.+ ..++ .+..+++|++|+++++..++.++. +. .+++|++|++++|..+.. ++..+..+++|+.|
T Consensus 621 s~l-~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls------~l~~Le~L~L~~c~~L~~------lp~si~~L~~L~~L 686 (1153)
T PLN03210 621 SKL-EKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LS------MATNLETLKLSDCSSLVE------LPSSIQYLNKLEDL 686 (1153)
T ss_pred ccc-cccccccccCCCCCEEECCCCCCcCcCCc-cc------cCCcccEEEecCCCCccc------cchhhhccCCCCEE
Confidence 984 4555 478899999999999887777763 22 289999999999987654 56677889999999
Q ss_pred cccccccccCCCCC--CCCCccEEEEecCCCcccccCCCCccceEEEcCCCCceeeccccccCCCCceeeccCCcccccc
Q 042439 212 HILRCSKLKGPFPE--HLPALEMLVIEGCEELSVSVSSLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLA 289 (766)
Q Consensus 212 ~l~~c~~l~~~~p~--~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 289 (766)
++++|..++ .+|. .+++|+.|++++|..+.......++|+.|+++++....++..
T Consensus 687 ~L~~c~~L~-~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~---------------------- 743 (1153)
T PLN03210 687 DMSRCENLE-ILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSN---------------------- 743 (1153)
T ss_pred eCCCCCCcC-ccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccc----------------------
Confidence 999998887 7775 467888888888876653333355777777777653221100
Q ss_pred CCCCCCCCCccEEEecccCCccchhcccCccccCCCCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCC
Q 042439 290 GPLKPQLPKLEELEINDMKEHTYIWKSHNGLLQDSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQ 369 (766)
Q Consensus 290 ~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 369 (766)
..+++|+.|.+.++..... + .. +..+. ......+++|+.|++++|.
T Consensus 744 ----~~l~~L~~L~l~~~~~~~l-~-------~~--------------~~~l~--------~~~~~~~~sL~~L~Ls~n~ 789 (1153)
T PLN03210 744 ----LRLENLDELILCEMKSEKL-W-------ER--------------VQPLT--------PLMTMLSPSLTRLFLSDIP 789 (1153)
T ss_pred ----ccccccccccccccchhhc-c-------cc--------------ccccc--------hhhhhccccchheeCCCCC
Confidence 0123333333333222111 0 00 00000 0001123688888888888
Q ss_pred CCcccCcccCCCCCccEEEecCCCCCcccCCCCCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCccc
Q 042439 370 GLVKLPQSSLSLSSLREIEIYGCWSLVSFPEVALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRR 449 (766)
Q Consensus 370 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 449 (766)
....+|..++++++|+.|++++|..++.+|....+++|+.|++++|..+..+|..
T Consensus 790 ~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~------------------------- 844 (1153)
T PLN03210 790 SLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI------------------------- 844 (1153)
T ss_pred CccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc-------------------------
Confidence 7888888888888888888888877777765445555555555555544333221
Q ss_pred ccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcc
Q 042439 450 YTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNL 529 (766)
Q Consensus 450 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 529 (766)
+++|++|+++++.. +.+|..+..+++|+.|++++|..+..+
T Consensus 845 --------------------------------------~~nL~~L~Ls~n~i-~~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 845 --------------------------------------STNISDLNLSRTGI-EEVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred --------------------------------------ccccCEeECCCCCC-ccChHHHhcCCCCCEEECCCCCCcCcc
Confidence 14466666666543 456777888899999999999888888
Q ss_pred cccccCCCCCCEEEecCCCCccccC
Q 042439 530 PSGLHNLHQLQEISIGRCGNLESFP 554 (766)
Q Consensus 530 p~~l~~l~~L~~L~l~~~~~l~~l~ 554 (766)
|..+..+++|+.+++++|..+..++
T Consensus 886 ~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CcccccccCCCeeecCCCccccccc
Confidence 8888889999999999998776554
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.8e-23 Score=250.33 Aligned_cols=316 Identities=23% Similarity=0.343 Sum_probs=250.9
Q ss_pred CCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCCCCCC
Q 042439 325 CSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPEVALP 404 (766)
Q Consensus 325 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l 404 (766)
.+|+.|.+.++ .++.+|... .+.+|+.|++.+|. +..++..+..+++|+.|++++|..++.+|....+
T Consensus 589 ~~Lr~L~~~~~-~l~~lP~~f----------~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l 656 (1153)
T PLN03210 589 PKLRLLRWDKY-PLRCMPSNF----------RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMA 656 (1153)
T ss_pred cccEEEEecCC-CCCCCCCcC----------CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCccccC
Confidence 46888888875 356655432 13689999999987 5667777888999999999998888888888889
Q ss_pred CCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccc
Q 042439 405 SKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEV 484 (766)
Q Consensus 405 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~ 484 (766)
++|++|++++|..+..+|.. +..+++|+.|++++|..++.+ +...
T Consensus 657 ~~Le~L~L~~c~~L~~lp~s------------------------i~~L~~L~~L~L~~c~~L~~L-p~~i---------- 701 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSS------------------------IQYLNKLEDLDMSRCENLEIL-PTGI---------- 701 (1153)
T ss_pred CcccEEEecCCCCccccchh------------------------hhccCCCCEEeCCCCCCcCcc-CCcC----------
Confidence 99999999999888877765 244778999999999888776 4321
Q ss_pred cCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCcc------cc-CCCC
Q 042439 485 GNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLE------SF-PEGG 557 (766)
Q Consensus 485 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~------~l-~~~~ 557 (766)
-+++|+.|++++|..+..+|.. .++|+.|++++|. +..+|..+ .+++|++|.+.++.... .+ +...
T Consensus 702 --~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 702 --NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred --CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhh
Confidence 1267999999999887777753 4678999999885 66777655 58899999988764211 11 1112
Q ss_pred CCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCC
Q 042439 558 LPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSS 637 (766)
Q Consensus 558 ~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~ 637 (766)
...++|+.|++++|+....+|..++++++|+.|++++|..++.+|....+++|+.|++++ |..+...+. ..++
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~-c~~L~~~p~------~~~n 847 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSG-CSRLRTFPD------ISTN 847 (1153)
T ss_pred hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCC-CCccccccc------cccc
Confidence 234689999999999999999999999999999999999998888777889999999999 766654332 2368
Q ss_pred CcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCC
Q 042439 638 LRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPE 712 (766)
Q Consensus 638 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 712 (766)
|+.|++++| .+..+|..+ ..+++|+.|++.+|++++.+|..+..+++|+.+++++|..++.++.
T Consensus 848 L~~L~Ls~n--~i~~iP~si---------~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 848 ISDLNLSRT--GIEEVPWWI---------EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cCEeECCCC--CCccChHHH---------hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 999999986 577888766 4688999999999999999998888999999999999999886654
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=4.1e-27 Score=227.64 Aligned_cols=250 Identities=20% Similarity=0.172 Sum_probs=150.8
Q ss_pred hhhccCCCCCCCceEEEecCCCCCCCccchhhHHHHhhcCCCCCCcceEEEEecCCCCCCccccCCCCCCeeEEEEecCC
Q 042439 55 KEAQLDGKKNLRELLLRWALNTDGSSSREAKTENDVLDMLKPHEILEQFCISGYGGTKFPAWLGDSSLPNLVTLKFENCD 134 (766)
Q Consensus 55 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~ 134 (766)
....+..+..|.+|++..+.. ...+.+++.+..++.|+.+.++...+|..+ .++.+|..|+.++|.
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l------------~~lp~aig~l~~l~~l~vs~n~ls~lp~~i--~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKL------------SQLPAAIGELEALKSLNVSHNKLSELPEQI--GSLISLVKLDCSSNE 125 (565)
T ss_pred ccHhhhcccceeEEEeccchh------------hhCCHHHHHHHHHHHhhcccchHhhccHHH--hhhhhhhhhhccccc
Confidence 334556666666666654332 123444455556667777777777777766 356677777777777
Q ss_pred CCCCCCCCCCcCcccceeecCCCCceecCcccccCCCCCCCCCccEEeccCccchhhhhccCCCccccccCcccceeccc
Q 042439 135 MCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHIL 214 (766)
Q Consensus 135 ~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~ 214 (766)
+.+..+.++++-.|+.|+..++ ++...+.++.. +.+|..+++.++...+ .+....++..|++|+..
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~------~~~l~~l~~~~n~l~~-------l~~~~i~m~~L~~ld~~ 191 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVN------LSKLSKLDLEGNKLKA-------LPENHIAMKRLKHLDCN 191 (565)
T ss_pred eeecCchHHHHhhhhhhhcccc-ccccCchHHHH------HHHHHHhhccccchhh-------CCHHHHHHHHHHhcccc
Confidence 6555555777777777776553 44444443332 5566666666665432 33333346667776654
Q ss_pred ccccccCCCCCCCCCccEEEEecCCCcccccCCCCccceEEEcCCCCceeeccccccCCCCceeeccCCccccccCCCCC
Q 042439 215 RCSKLKGPFPEHLPALEMLVIEGCEELSVSVSSLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLKP 294 (766)
Q Consensus 215 ~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 294 (766)
++ .++ .+|. .++.+.+|+-|++..|+....+
T Consensus 192 ~N-~L~-tlP~------------------~lg~l~~L~~LyL~~Nki~~lP----------------------------- 222 (565)
T KOG0472|consen 192 SN-LLE-TLPP------------------ELGGLESLELLYLRRNKIRFLP----------------------------- 222 (565)
T ss_pred hh-hhh-cCCh------------------hhcchhhhHHHHhhhcccccCC-----------------------------
Confidence 43 133 6665 3333444444444444432211
Q ss_pred CCCCccEEEecccCCccchhcccCccccCCCCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCccc
Q 042439 295 QLPKLEELEINDMKEHTYIWKSHNGLLQDSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKL 374 (766)
Q Consensus 295 ~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 374 (766)
.|++...|...+.+.+.+ ...+.....+++.+..||+.+ ++++++|.+.. ...+|+.||+++|. +..+
T Consensus 223 ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~c---------lLrsL~rLDlSNN~-is~L 290 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEIC---------LLRSLERLDLSNND-ISSL 290 (565)
T ss_pred CCCccHHHHHHHhcccHH-HhhHHHHhcccccceeeeccc-cccccCchHHH---------HhhhhhhhcccCCc-cccC
Confidence 234444343334433333 334455566888999999998 57888886631 12789999999998 5678
Q ss_pred CcccCCCCCccEEEecCCCC
Q 042439 375 PQSSLSLSSLREIEIYGCWS 394 (766)
Q Consensus 375 ~~~~~~l~~L~~L~L~~~~~ 394 (766)
|..++++ +|+.|-+.+|+.
T Consensus 291 p~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 291 PYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred Ccccccc-eeeehhhcCCch
Confidence 8899999 999999999974
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=2.2e-25 Score=237.64 Aligned_cols=242 Identities=20% Similarity=0.215 Sum_probs=132.3
Q ss_pred CCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEE
Q 042439 488 PPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLR 567 (766)
Q Consensus 488 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 567 (766)
|.+|++++++.+.. ..+|.+++.+.+|+.++..+|. +..+|..+...++|+.|.+.+| .++.+|.....+.+|++|+
T Consensus 240 p~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNL-SNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecchhhh-hcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeee
Confidence 34555555555432 3334555556666666665553 3445555555555555555555 4455555444455555555
Q ss_pred eccCcCccccCcc--------------------------CCCCCCCCeeEecCCCCC-CCCCCCCCCCCcceeEeccccc
Q 042439 568 IHGCERLEALPKG--------------------------LHNLTSLQELTIGRGVEL-PSLEEDGLPTNLHSLWIAGNME 620 (766)
Q Consensus 568 l~~~~~~~~~p~~--------------------------~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~L~~L~l~~N~~ 620 (766)
+..|.+ ..+|.. -..++.|+.|.+.+|... ..+|.+.....|+.|++++|
T Consensus 317 L~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-- 393 (1081)
T KOG0618|consen 317 LQSNNL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-- 393 (1081)
T ss_pred ehhccc-cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc--
Confidence 555542 222221 123445555555555433 23444455666666666665
Q ss_pred cchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceee
Q 042439 621 IWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELY 700 (766)
Q Consensus 621 ~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ 700 (766)
.+...++.. +.++..|++|++|+| .+..+|+.+ ...+.|++|...+ |.+..+| .+..+++|+.++
T Consensus 394 rL~~fpas~--~~kle~LeeL~LSGN--kL~~Lp~tv---------a~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 394 RLNSFPASK--LRKLEELEELNLSGN--KLTTLPDTV---------ANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLD 458 (1081)
T ss_pred ccccCCHHH--HhchHHhHHHhcccc--hhhhhhHHH---------HhhhhhHHHhhcC-Cceeech-hhhhcCcceEEe
Confidence 222222222 556666666666665 455666544 2455666666666 5666666 666777777777
Q ss_pred cccCcCcccCCC-CCcc-cccceeeecCChhHHHHhhccCCcccccccCcceEEECCe
Q 042439 701 LEDCPKLKYFPE-KGLP-SSLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPYVVIDRK 756 (766)
Q Consensus 701 l~~c~~l~~l~~-~~~~-~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~i~~v~~~~~ 756 (766)
|+. ++++.+.. ...+ ++|++||++||+++- .+.+..+..+++..++++-+
T Consensus 459 lS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l~-----~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 459 LSC-NNLSEVTLPEALPSPNLKYLDLSGNTRLV-----FDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred ccc-chhhhhhhhhhCCCcccceeeccCCcccc-----cchhhhHHhhhhhheecccC
Confidence 775 44554433 3335 778888888877521 23344555566666666544
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.8e-25 Score=227.40 Aligned_cols=223 Identities=17% Similarity=0.183 Sum_probs=162.3
Q ss_pred cceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCC-ccccCCCCCCCCCcceEEec
Q 042439 491 LKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGN-LESFPEGGLPCAKLSKLRIH 569 (766)
Q Consensus 491 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~-l~~l~~~~~~~~~L~~L~l~ 569 (766)
|-.|++++|. ++.+|..+..+..|++|++++|+....--..+..+++|++|.+++... +..+|..+-.+.+|+.+|++
T Consensus 152 LLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 152 LLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred Hhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 4455555543 445555666777777888877764322122344466777777776432 34567766777788888888
Q ss_pred cCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCC
Q 042439 570 GCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDD 649 (766)
Q Consensus 570 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~ 649 (766)
.|. +..+|..+..+++|+.|++++|...+.-...+...+|++|+++.| .....|..+..++.|+.|.+.+|...
T Consensus 231 ~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-----QLt~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 231 ENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-----QLTVLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred ccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc-----hhccchHHHhhhHHHHHHHhccCccc
Confidence 765 556677777888888888888754333333355677888888886 33344555889999999999998888
Q ss_pred CccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCC-CCcccccceeeecCCh
Q 042439 650 MVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPE-KGLPSSLLQLYIGGCP 728 (766)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~i~~~~ 728 (766)
.+.+|.+++ .+.+|+.+...+ |+++-+|.+++.|++|++|.++. +.+-.+|+ +.+++.|+.||++.||
T Consensus 305 FeGiPSGIG---------KL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 305 FEGIPSGIG---------KLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccCCccchh---------hhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCc
Confidence 999999885 677888888888 79999999999999999999997 46667787 5668999999999999
Q ss_pred hHH
Q 042439 729 LIA 731 (766)
Q Consensus 729 ~l~ 731 (766)
+|-
T Consensus 374 nLV 376 (1255)
T KOG0444|consen 374 NLV 376 (1255)
T ss_pred Ccc
Confidence 864
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=1.2e-25 Score=239.50 Aligned_cols=126 Identities=25% Similarity=0.365 Sum_probs=102.6
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccc-cccCCCCCCEEEecCCCCccccCCCCCCCCCcceEE
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPS-GLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLR 567 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 567 (766)
+.|+.|++.+|...+.....+.++.+|+.|++++|. ++.+|. .+.+++.|++|++++| .++.+|.....++.|++|.
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHh
Confidence 669999999999888777778889999999999985 666665 4567999999999998 7888998888899999999
Q ss_pred eccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCC-CCcceeEeccc
Q 042439 568 IHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLP-TNLHSLWIAGN 618 (766)
Q Consensus 568 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-~~L~~L~l~~N 618 (766)
..+|.+ ..+| .+..++.|+.+|++.|..-...-....+ ++|++||+++|
T Consensus 437 ahsN~l-~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 437 AHSNQL-LSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred hcCCce-eech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence 999874 4566 7889999999999988533322222334 89999999997
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=3e-24 Score=218.65 Aligned_cols=251 Identities=19% Similarity=0.234 Sum_probs=125.2
Q ss_pred CcccEEEeecCCCCcccCc-ccCCCCCccEEEecCCCCCcccC-CCCCCCCcceEEEccCCCCCccccccccCcchhHHH
Q 042439 358 CRLEYLRLSGCQGLVKLPQ-SSLSLSSLREIEIYGCWSLVSFP-EVALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEI 435 (766)
Q Consensus 358 ~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 435 (766)
.++-.|+|++|++ ..+|. .+.+++.|-.|||++| .+..+| ....+.+|++|++++|+....--.
T Consensus 126 Kn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr------------ 191 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR------------ 191 (1255)
T ss_pred cCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHh------------
Confidence 4666677777763 44443 4456677777777776 334443 344466666666666652111000
Q ss_pred HHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCC
Q 042439 436 LMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSL 515 (766)
Q Consensus 436 l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 515 (766)
.+.++.+|++|.+++... ....+|. .+..+.+|
T Consensus 192 ------------QLPsmtsL~vLhms~TqR-----Tl~N~Pt------------------------------sld~l~NL 224 (1255)
T KOG0444|consen 192 ------------QLPSMTSLSVLHMSNTQR-----TLDNIPT------------------------------SLDDLHNL 224 (1255)
T ss_pred ------------cCccchhhhhhhcccccc-----hhhcCCC------------------------------chhhhhhh
Confidence 001133344444443221 1123333 34444455
Q ss_pred CEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCC
Q 042439 516 ETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRG 595 (766)
Q Consensus 516 ~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 595 (766)
..+|++.| .+..+|+.+.++++|+.|++++| .++.+......-.+|++|+++.|+ +..+|..+..++.|+.|.+.+|
T Consensus 225 ~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 225 RDVDLSEN-NLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred hhcccccc-CCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccC
Confidence 55555544 24444555555555555555554 333333322233355555555544 3344555555555555555544
Q ss_pred CC-CCCC-CCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccc
Q 042439 596 VE-LPSL-EEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLT 673 (766)
Q Consensus 596 ~~-l~~~-~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 673 (766)
.. ...+ ..++.+.+|+.+..++|. ....|..+..++.|+.|.++.| .+..+|+.+ +.++.|+
T Consensus 302 kL~FeGiPSGIGKL~~Levf~aanN~-----LElVPEglcRC~kL~kL~L~~N--rLiTLPeaI---------HlL~~l~ 365 (1255)
T KOG0444|consen 302 KLTFEGIPSGIGKLIQLEVFHAANNK-----LELVPEGLCRCVKLQKLKLDHN--RLITLPEAI---------HLLPDLK 365 (1255)
T ss_pred cccccCCccchhhhhhhHHHHhhccc-----cccCchhhhhhHHHHHhccccc--ceeechhhh---------hhcCCcc
Confidence 31 1222 223445555555555541 1222333667777777777765 566677666 5677777
Q ss_pred eEEeccCCCCccchh
Q 042439 674 SLLIFSFPNLERLSS 688 (766)
Q Consensus 674 ~L~l~~~~~l~~l~~ 688 (766)
.|++++++++..=|.
T Consensus 366 vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 366 VLDLRENPNLVMPPK 380 (1255)
T ss_pred eeeccCCcCccCCCC
Confidence 777777776665443
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=2e-15 Score=167.68 Aligned_cols=257 Identities=28% Similarity=0.351 Sum_probs=171.5
Q ss_pred CcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCCCCCCCCcceEEEccCCCCCccccccccCcchhHHHHH
Q 042439 358 CRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPEVALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILM 437 (766)
Q Consensus 358 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~ 437 (766)
..-..|+++++.+ ..+|..+. ++|+.|++.+| .++.+|. .+++|++|++++|. +..+|..
T Consensus 201 ~~~~~LdLs~~~L-tsLP~~l~--~~L~~L~L~~N-~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l------------- 260 (788)
T PRK15387 201 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL------------- 260 (788)
T ss_pred CCCcEEEcCCCCC-CcCCcchh--cCCCEEEccCC-cCCCCCC--CCCCCcEEEecCCc-cCcccCc-------------
Confidence 3456778888864 46776554 47888888887 4555664 36788888887774 5555543
Q ss_pred HhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCE
Q 042439 438 EEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLET 517 (766)
Q Consensus 438 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 517 (766)
.++|+.|+++++. ++.+ + . .|.+|+.|++++|... .+|. .+++|+.
T Consensus 261 --------------p~sL~~L~Ls~N~-L~~L-p-----~---------lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~ 306 (788)
T PRK15387 261 --------------PPGLLELSIFSNP-LTHL-P-----A---------LPSGLCKLWIFGNQLT-SLPV---LPPGLQE 306 (788)
T ss_pred --------------ccccceeeccCCc-hhhh-h-----h---------chhhcCEEECcCCccc-cccc---cccccce
Confidence 3467777777752 4333 1 1 2355788888877543 3443 2467888
Q ss_pred EEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCC
Q 042439 518 IDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVE 597 (766)
Q Consensus 518 L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 597 (766)
|++++|. +..+|.. ..+|+.|++++| .+..+|.. ..+|+.|++++|.+. .+|.. .++|+.|++++|.
T Consensus 307 LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~- 373 (788)
T PRK15387 307 LSVSDNQ-LASLPAL---PSELCKLWAYNN-QLTSLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNR- 373 (788)
T ss_pred eECCCCc-cccCCCC---cccccccccccC-cccccccc---ccccceEecCCCccC-CCCCC---Ccccceehhhccc-
Confidence 8888875 4445542 346778888887 45566641 147888888888754 45543 2467778888774
Q ss_pred CCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEe
Q 042439 598 LPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLI 677 (766)
Q Consensus 598 l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 677 (766)
+..+|. .+.+|+.|++++|. +. .+|. ..++|+.|++++| .+..+|. .+.+|+.|++
T Consensus 374 L~~LP~--l~~~L~~LdLs~N~--Lt---~LP~---l~s~L~~LdLS~N--~LssIP~------------l~~~L~~L~L 429 (788)
T PRK15387 374 LTSLPA--LPSGLKELIVSGNR--LT---SLPV---LPSELKELMVSGN--RLTSLPM------------LPSGLLSLSV 429 (788)
T ss_pred cccCcc--cccccceEEecCCc--cc---CCCC---cccCCCEEEccCC--cCCCCCc------------chhhhhhhhh
Confidence 444553 34678899998862 22 2221 1367899999987 4666764 2457888999
Q ss_pred ccCCCCccchhhhccCCCcceeecccCcC
Q 042439 678 FSFPNLERLSSSIVDLQNLTELYLEDCPK 706 (766)
Q Consensus 678 ~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 706 (766)
++ |.++.+|..+..+++|+.|++++|+.
T Consensus 430 s~-NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 430 YR-NQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred cc-CcccccChHHhhccCCCeEECCCCCC
Confidence 98 68999999888999999999999764
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=1.3e-14 Score=161.39 Aligned_cols=112 Identities=23% Similarity=0.254 Sum_probs=69.9
Q ss_pred CCcceEEEEecCCCCCCccccCCCCCCeeEEEEecCCCCCCCCCCCCcCcccceeecCCCCceecCcccccCCCCCCCCC
Q 042439 98 EILEQFCISGYGGTKFPAWLGDSSLPNLVTLKFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPC 177 (766)
Q Consensus 98 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 177 (766)
.+-..|+++++.+..+|..+. ++|+.|++.+|.+ +.+|.+ .++|++|++++| .++.++.. .++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~----~~L~~L~L~~N~L-t~LP~l--p~~Lk~LdLs~N-~LtsLP~l---------p~s 263 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDNNL-TSLPAL--PPELRTLEVSGN-QLTSLPVL---------PPG 263 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh----cCCCEEEccCCcC-CCCCCC--CCCCcEEEecCC-ccCcccCc---------ccc
Confidence 467788898888888888663 5788999998874 456643 578888888875 45555421 456
Q ss_pred ccEEeccCccchhhhhccCCCccccccCcccceecccccccccCCCCCCCCCccEEEEecC
Q 042439 178 LETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKGPFPEHLPALEMLVIEGC 238 (766)
Q Consensus 178 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~ 238 (766)
|++|++++|... . ++. .+++|+.|++.+| +++ .+|...++|+.|++++|
T Consensus 264 L~~L~Ls~N~L~-~------Lp~---lp~~L~~L~Ls~N-~Lt-~LP~~p~~L~~LdLS~N 312 (788)
T PRK15387 264 LLELSIFSNPLT-H------LPA---LPSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDN 312 (788)
T ss_pred cceeeccCCchh-h------hhh---chhhcCEEECcCC-ccc-cccccccccceeECCCC
Confidence 777777776531 1 111 2345666777665 355 45544444444444443
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=1.4e-15 Score=148.16 Aligned_cols=256 Identities=15% Similarity=0.081 Sum_probs=135.7
Q ss_pred CCCCccEEEecccCCccchhcccCccccCCCCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCccc
Q 042439 295 QLPKLEELEINDMKEHTYIWKSHNGLLQDSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKL 374 (766)
Q Consensus 295 ~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 374 (766)
.|..+++|+-+++++|.+ ..+.++.|.++..|.+|.+.+.+++++++...+.. + ..|+.|.+.-|++.-..
T Consensus 86 aF~~l~~LRrLdLS~N~I-s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g----L----~slqrLllNan~i~Cir 156 (498)
T KOG4237|consen 86 AFKTLHRLRRLDLSKNNI-SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG----L----SSLQRLLLNANHINCIR 156 (498)
T ss_pred hccchhhhceecccccch-hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh----H----HHHHHHhcChhhhcchh
Confidence 455555555555555554 33445556666666666666656666666554322 1 45555555555543344
Q ss_pred CcccCCCCCccEEEecCCCCCcccCC--CCCCCCcceEEEccCCCCCcc------------ccccccCcchhHHHHHHhc
Q 042439 375 PQSSLSLSSLREIEIYGCWSLVSFPE--VALPSKLRKIEICSCDALKSL------------PEAWMCDTNSSLEILMEEG 440 (766)
Q Consensus 375 ~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~------------~~~~~~~~~~~~~~l~~~~ 440 (766)
...+..+++|..|.+.+|. ...++. ...+..++.+.+..|+....- +..+....+..-..+...+
T Consensus 157 ~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~R 235 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKR 235 (498)
T ss_pred HHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHH
Confidence 4455566666666666652 233332 222455555555544422211 1111111122222233333
Q ss_pred cccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhH-hhcCCCCCCCEEE
Q 042439 441 IQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIA-ERLDNNTSLETID 519 (766)
Q Consensus 441 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~ 519 (766)
+....+..+.-. +++ +..--.+.|.....-| ..|..+++|++|+
T Consensus 236 i~q~~a~kf~c~-------------~es----------------------l~s~~~~~d~~d~~cP~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 236 INQEDARKFLCS-------------LES----------------------LPSRLSSEDFPDSICPAKCFKKLPNLRKLN 280 (498)
T ss_pred hcccchhhhhhh-------------HHh----------------------HHHhhccccCcCCcChHHHHhhcccceEec
Confidence 322222211100 000 0000111222222222 3477788888888
Q ss_pred eeeCCCCCcccccccCCCCCCEEEecCCCCccccCC-CCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCC
Q 042439 520 ICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPE-GGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGV 596 (766)
Q Consensus 520 l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 596 (766)
+++|+....-+.+|.....+++|.+..| .++.+.. .+..+..|+.|++.+|++....|..|..+.+|..|.+-.|+
T Consensus 281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 281 LSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 8887655555667777888888888887 4455544 44557788888888888777777777788888888877664
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1e-15 Score=131.65 Aligned_cols=162 Identities=23% Similarity=0.364 Sum_probs=123.1
Q ss_pred cCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCC
Q 042439 509 LDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQ 588 (766)
Q Consensus 509 ~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 588 (766)
+..+.+++.|.+++|. +..+|+.++.+.+|+.|++++| .++.+|..+..+++|+.|++..|. +..+|.+|+++|.|+
T Consensus 29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence 3446778888899974 7777888999999999999887 778899989999999999999876 567789999999999
Q ss_pred eeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCC
Q 042439 589 ELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPL 668 (766)
Q Consensus 589 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (766)
.||+.+|+.-+ =.+-+| |..++.|+.|+++.| .++.+|++++ .
T Consensus 106 vldltynnl~e-------------~~lpgn-------------ff~m~tlralyl~dn--dfe~lp~dvg---------~ 148 (264)
T KOG0617|consen 106 VLDLTYNNLNE-------------NSLPGN-------------FFYMTTLRALYLGDN--DFEILPPDVG---------K 148 (264)
T ss_pred hhhcccccccc-------------ccCCcc-------------hhHHHHHHHHHhcCC--CcccCChhhh---------h
Confidence 99999884322 111222 555666666666665 5666776663 5
Q ss_pred ccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCC
Q 042439 669 PASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPE 712 (766)
Q Consensus 669 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 712 (766)
+++|+.|.+++ +.+-++|..++.++.|++|+|.+ +.++.+|+
T Consensus 149 lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 149 LTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred hcceeEEeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence 66777777777 67778888888888888888888 46677665
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=1.4e-15 Score=148.09 Aligned_cols=277 Identities=17% Similarity=0.163 Sum_probs=178.4
Q ss_pred HhhcCCCCCCcceEEEEecCCCCCCccccCCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeecCCCCceecCccccc
Q 042439 90 VLDMLKPHEILEQFCISGYGGTKFPAWLGDSSLPNLVTLKFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYG 168 (766)
Q Consensus 90 ~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 168 (766)
++..+. +.-..++|..|.+..+|...+ ..+++|++|+|++|.+...-| +|.++++|..|-+.+++.|++++...++
T Consensus 61 VP~~LP--~~tveirLdqN~I~~iP~~aF-~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 61 VPANLP--PETVEIRLDQNQISSIPPGAF-KTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred CcccCC--CcceEEEeccCCcccCChhhc-cchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 444443 477888999999999998776 689999999999999765555 4999999999999998999999877666
Q ss_pred CCCCCCCCCccEEeccCccchhhhhccCCCccccccCcccceecccccccccCCCCC----CCCCccEEEEecCCCcc--
Q 042439 169 NDPPIPFPCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKGPFPE----HLPALEMLVIEGCEELS-- 242 (766)
Q Consensus 169 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~----~l~~L~~L~l~~~~~l~-- 242 (766)
. +..|+.|.+.-|...-. ....+..+++|..|.+.++. +. .++. .+..++.+.+..++.+.
T Consensus 138 g-----L~slqrLllNan~i~Ci------r~~al~dL~~l~lLslyDn~-~q-~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 138 G-----LSSLQRLLLNANHINCI------RQDALRDLPSLSLLSLYDNK-IQ-SICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred h-----HHHHHHHhcChhhhcch------hHHHHHHhhhcchhcccchh-hh-hhccccccchhccchHhhhcCcccccc
Confidence 5 77788777776654221 23566778888888888773 43 3432 23445555544444111
Q ss_pred -------------cccCCCCccceEEEcCCCCceeeccccccCCCCceeeccCCccccccCCCC-CCCCCccEEEecccC
Q 042439 243 -------------VSVSSLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLK-PQLPKLEELEINDMK 308 (766)
Q Consensus 243 -------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~~~l~ 308 (766)
..++.+.......+......... ...|..+..++.. ..+..++..+..| ..|..|.+|+-++++
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~-a~kf~c~~esl~s-~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQED-ARKFLCSLESLPS-RLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccc-hhhhhhhHHhHHH-hhccccCcCCcChHHHHhhcccceEeccC
Confidence 11121111111111111111100 0001111111111 1222333444444 457888888888888
Q ss_pred CccchhcccCccccCCCCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEE
Q 042439 309 EHTYIWKSHNGLLQDSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIE 388 (766)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 388 (766)
+|++ ..+..++|.++..+++|.+..+ ++..+....+ ..+ .+|+.|+|.+|+++...|..|..+..|.+|+
T Consensus 283 nN~i-~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f----~~l----s~L~tL~L~~N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 283 NNKI-TRIEDGAFEGAAELQELYLTRN-KLEFVSSGMF----QGL----SGLKTLSLYDNQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred CCcc-chhhhhhhcchhhhhhhhcCcc-hHHHHHHHhh----hcc----ccceeeeecCCeeEEEecccccccceeeeee
Confidence 8887 4466678888999999998874 5655544332 222 7889999999998888888888899999999
Q ss_pred ecCCCC
Q 042439 389 IYGCWS 394 (766)
Q Consensus 389 L~~~~~ 394 (766)
+-.|+.
T Consensus 353 l~~Np~ 358 (498)
T KOG4237|consen 353 LLSNPF 358 (498)
T ss_pred hccCcc
Confidence 988764
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.42 E-value=7.2e-13 Score=148.62 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=36.3
Q ss_pred CcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCCCCCCCCcceEEEccCCCCCccc
Q 042439 358 CRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPEVALPSKLRKIEICSCDALKSLP 422 (766)
Q Consensus 358 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~ 422 (766)
.+...|+++++.+ ..+|..+ .++|+.|++++| .++.+|.. .+++|++|++++|. +..+|
T Consensus 178 ~~~~~L~L~~~~L-tsLP~~I--p~~L~~L~Ls~N-~LtsLP~~-l~~nL~~L~Ls~N~-LtsLP 236 (754)
T PRK15370 178 NNKTELRLKILGL-TTIPACI--PEQITTLILDNN-ELKSLPEN-LQGNIKTLYANSNQ-LTSIP 236 (754)
T ss_pred cCceEEEeCCCCc-CcCCccc--ccCCcEEEecCC-CCCcCChh-hccCCCEEECCCCc-cccCC
Confidence 4677888887763 4566544 257888888887 44455532 23567777777664 33444
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.39 E-value=1.9e-12 Score=145.26 Aligned_cols=181 Identities=20% Similarity=0.305 Sum_probs=83.0
Q ss_pred CCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEec
Q 042439 514 SLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIG 593 (766)
Q Consensus 514 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 593 (766)
+|+.|++++|. +..+|..+. ++|+.|++++| .+..+|..+. ++|+.|++++|.+. .+|..+. ++|+.|+++
T Consensus 242 ~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 242 TIQEMELSINR-ITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQ 312 (754)
T ss_pred cccEEECcCCc-cCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhc
Confidence 45555555543 234443332 34555555544 3334444332 24555555555432 2333221 245555555
Q ss_pred CCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccc
Q 042439 594 RGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLT 673 (766)
Q Consensus 594 ~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 673 (766)
+|.. ..+|. ..+++|+.|++++|. +. .+|..+ .++|+.|++++| .+..+|.. .+++|+
T Consensus 313 ~N~L-t~LP~-~l~~sL~~L~Ls~N~--Lt---~LP~~l--~~sL~~L~Ls~N--~L~~LP~~-----------lp~~L~ 370 (754)
T PRK15370 313 SNSL-TALPE-TLPPGLKTLEAGENA--LT---SLPASL--PPELQVLDVSKN--QITVLPET-----------LPPTIT 370 (754)
T ss_pred CCcc-ccCCc-cccccceeccccCCc--cc---cCChhh--cCcccEEECCCC--CCCcCChh-----------hcCCcC
Confidence 5432 22221 123455555555531 11 111111 145666666665 33445442 234566
Q ss_pred eEEeccCCCCccchhhhccCCCcceeecccCcCcccCCCC-----CcccccceeeecCChh
Q 042439 674 SLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPEK-----GLPSSLLQLYIGGCPL 729 (766)
Q Consensus 674 ~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~i~~~~~ 729 (766)
.|++++ +.+..+|..+. ++|+.|++++| ++..+|.. +..+++..|++.+||.
T Consensus 371 ~LdLs~-N~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 371 TLDVSR-NALTNLPENLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred EEECCC-CcCCCCCHhHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 666666 35556665433 35666666663 44555541 1124556666666664
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=3e-14 Score=122.72 Aligned_cols=150 Identities=21% Similarity=0.300 Sum_probs=113.3
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEe
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRI 568 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 568 (766)
.+++.|.+++|... .+|..++.+.+|+.|++++|+ +.++|..+..+++|+.|+++-| .+..+|.+++.+|.|++||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 45778888887654 455568889999999999984 8889999999999999999987 77889999999999999999
Q ss_pred ccCcCcc-ccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEecc
Q 042439 569 HGCERLE-ALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGC 646 (766)
Q Consensus 569 ~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~ 646 (766)
.+|.... .+|..|..++.|+.|++++|..--.+++.+.+++|+.|.+.+| -....|.+++.++.|++|++.+|
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-----dll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-----DLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-----chhhCcHHHHHHHHHHHHhcccc
Confidence 9987654 5688888888999999998854444555566666666666664 22233444555555555555554
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.23 E-value=7.7e-13 Score=138.09 Aligned_cols=158 Identities=21% Similarity=0.159 Sum_probs=87.2
Q ss_pred CCcceeeecCCCch------hhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCC---CCEEEecCCCCcc----ccCC
Q 042439 489 PSLKSLHVLSCSKL------ESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQ---LQEISIGRCGNLE----SFPE 555 (766)
Q Consensus 489 ~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~---L~~L~l~~~~~l~----~l~~ 555 (766)
+++++++++++... ..++..+..+++|+.|++++|...+..+..+..+.+ |++|++++|.... .+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 55777777766544 234556666778888888887665544444444444 8888888775431 1112
Q ss_pred CCCCC-CCcceEEeccCcCcc----ccCccCCCCCCCCeeEecCCCCCCC-CC----CCCCCCCcceeEeccccccchhh
Q 042439 556 GGLPC-AKLSKLRIHGCERLE----ALPKGLHNLTSLQELTIGRGVELPS-LE----EDGLPTNLHSLWIAGNMEIWKST 625 (766)
Q Consensus 556 ~~~~~-~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~l~~-~~----~~~~~~~L~~L~l~~N~~~l~~~ 625 (766)
.+..+ ++|+.|++++|.+.+ .++..+..++.|++|++++|..... ++ .....++|+.|++++|...-...
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 22334 677888888877653 2233455666777777777643210 00 11223466666666631111111
Q ss_pred hhcccccCCCCCCcEEEEecc
Q 042439 626 IEWGRGFHRFSSLRQLRISGC 646 (766)
Q Consensus 626 ~~~~~~~~~l~~L~~L~l~~~ 646 (766)
..+...+..+++|++|++++|
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHHhcccCCCCEEecCCC
Confidence 122222455666666666664
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=5e-12 Score=131.94 Aligned_cols=260 Identities=19% Similarity=0.112 Sum_probs=162.8
Q ss_pred CCcceeeecCCCchh----hhHhhcCCCCCCCEEEeeeCCCCC------cccccccCCCCCCEEEecCCCCccccCCCCC
Q 042439 489 PSLKSLHVLSCSKLE----SIAERLDNNTSLETIDICYCGNLK------NLPSGLHNLHQLQEISIGRCGNLESFPEGGL 558 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~------~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 558 (766)
++|+++++++|.... .++..+...+++++++++++...+ .++..+..+++|+.|++++|......+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 457788888777533 466677788899999999986441 2245567789999999999976543333333
Q ss_pred CC---CCcceEEeccCcCcc----ccCccCCCC-CCCCeeEecCCCCCCC----CC-CCCCCCCcceeEeccccccchhh
Q 042439 559 PC---AKLSKLRIHGCERLE----ALPKGLHNL-TSLQELTIGRGVELPS----LE-EDGLPTNLHSLWIAGNMEIWKST 625 (766)
Q Consensus 559 ~~---~~L~~L~l~~~~~~~----~~p~~~~~l-~~L~~L~l~~~~~l~~----~~-~~~~~~~L~~L~l~~N~~~l~~~ 625 (766)
.+ ++|+.|++++|.... .+...+..+ ++|+.|++++|..... +. .......|++|++++|.......
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 33 459999999998653 223345666 8999999999964421 11 12345689999999953322222
Q ss_pred hhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hh-c----cCCCccee
Q 042439 626 IEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SI-V----DLQNLTEL 699 (766)
Q Consensus 626 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~-~----~l~~L~~L 699 (766)
..++..+..+++|+.|++++|...-..+ ......+...++|++|++++| .++.... .+ . ..+.|++|
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~------~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L 255 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGA------SALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTL 255 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHH------HHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEE
Confidence 2333335667899999999974211000 001111245688999999995 5553211 11 1 24799999
Q ss_pred ecccCcCccc-----CCC-CCcccccceeeecCChhHHHHhhccCCcccccc-cCcceEEECCeE
Q 042439 700 YLEDCPKLKY-----FPE-KGLPSSLLQLYIGGCPLIAEKCRKDGGQYWDLL-THIPYVVIDRKW 757 (766)
Q Consensus 700 ~l~~c~~l~~-----l~~-~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~i-~~i~~v~~~~~~ 757 (766)
++++|. ++. +.. ....++|+++++++|+.-.+.+.. -.+.|.-- .++..++|.+++
T Consensus 256 ~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 256 SLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL-LAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred EccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH-HHHHHhhcCCchhhcccCCCC
Confidence 999974 331 111 112478999999999765443221 12233333 577777776654
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.08 E-value=7.9e-12 Score=123.43 Aligned_cols=90 Identities=20% Similarity=0.314 Sum_probs=52.8
Q ss_pred CeeEEEEecCCCCCCCC--C-CCCcCcccceeecCCCCceecCcccccCCCCCCCCCccEEeccCccchhhhhccCCCcc
Q 042439 124 NLVTLKFENCDMCTALP--S-VGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCLETLIFENMREWEDWISHGSSQR 200 (766)
Q Consensus 124 ~L~~L~L~~~~~~~~l~--~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 200 (766)
.|+.|.+++|.-.++-+ . ..++|++++|++.+|..+++..-.-.+. .+++|+++++..|..+.+.. ...
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~----~C~~l~~l~L~~c~~iT~~~----Lk~ 210 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLAR----YCRKLRHLNLHSCSSITDVS----LKY 210 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHH----hcchhhhhhhcccchhHHHH----HHH
Confidence 46677777776443322 2 3567777777777776665543222222 26677777777766655543 333
Q ss_pred ccccCcccceecccccccccC
Q 042439 201 VVEGFPKLRELHILRCSKLKG 221 (766)
Q Consensus 201 ~~~~l~~L~~L~l~~c~~l~~ 221 (766)
....+++|++|+++.|+.+++
T Consensus 211 la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred HHHhhhhHHHhhhccCchhhc
Confidence 445667777777777766653
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.01 E-value=1.3e-11 Score=121.97 Aligned_cols=87 Identities=22% Similarity=0.298 Sum_probs=44.5
Q ss_pred cccceeecCCCCceecCcccccCCCCCCCCCccEEeccCccchhhhhccCCCccccccCcccceecccccccccCC----
Q 042439 147 SLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKGP---- 222 (766)
Q Consensus 147 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~---- 222 (766)
-|+.|.++||..+.+-+..-+. ..+|++++|.+.+|..+.+.. .......+++|++|++..|..+++.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~----~~CpnIehL~l~gc~~iTd~s----~~sla~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFA----SNCPNIEHLALYGCKKITDSS----LLSLARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred ccccccccccccCCcchhhHHh----hhCCchhhhhhhcceeccHHH----HHHHHHhcchhhhhhhcccchhHHHHHHH
Confidence 5667777766544443322111 226666666666666544432 2333345566666666666555421
Q ss_pred CCCCCCCccEEEEecCCCc
Q 042439 223 FPEHLPALEMLVIEGCEEL 241 (766)
Q Consensus 223 ~p~~l~~L~~L~l~~~~~l 241 (766)
+...+++|++|+++.|+.+
T Consensus 211 la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred HHHhhhhHHHhhhccCchh
Confidence 2234555555555555543
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.85 E-value=1.9e-09 Score=123.46 Aligned_cols=63 Identities=29% Similarity=0.343 Sum_probs=34.0
Q ss_pred CcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccC-CCCCCCCcceEEEccCCCCCcc
Q 042439 358 CRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFP-EVALPSKLRKIEICSCDALKSL 421 (766)
Q Consensus 358 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~~ 421 (766)
+.|+.||+++|...+.+|..++.+-+|++|+++++ .+..+| ....+..|.+|++..+..+..+
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccc
Confidence 55566666665555556655666666666666655 233344 3334555555555555544443
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=4.5e-09 Score=120.31 Aligned_cols=230 Identities=23% Similarity=0.288 Sum_probs=126.8
Q ss_pred CCcceeeecCCCc-hhhh-HhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceE
Q 042439 489 PSLKSLHVLSCSK-LESI-AERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKL 566 (766)
Q Consensus 489 ~~L~~L~l~~~~~-~~~~-~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 566 (766)
+.|+.|-+..+.. ...+ ...|..++.|+.||+++|...+.+|..++.+-+|++|++++. .+..+|.++..+.+|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhee
Confidence 4577777766652 3333 344666777788888777777777777777777887777776 566777777777777777
Q ss_pred EeccCcCccccCccCCCCCCCCeeEecCCC---CCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCc----
Q 042439 567 RIHGCERLEALPKGLHNLTSLQELTIGRGV---ELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLR---- 639 (766)
Q Consensus 567 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~---~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~---- 639 (766)
++..+.....+|.....+++|++|.+..-. ....+.....+.+|+.+.+.. +....... +..++.|.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~-~s~~~~e~-----l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI-SSVLLLED-----LLGMTRLRSLLQ 697 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec-chhHhHhh-----hhhhHHHHHHhH
Confidence 777776666665555567777777775432 111122224455555555544 21100000 12222222
Q ss_pred EEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-----hhcc-CCCcceeecccCcCcccCCCC
Q 042439 640 QLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-----SIVD-LQNLTELYLEDCPKLKYFPEK 713 (766)
Q Consensus 640 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-----~~~~-l~~L~~L~l~~c~~l~~l~~~ 713 (766)
.+.+.++ .....+..+ ..+.+|+.|.+.+|........ .... |+++.++.+.+|...+.....
T Consensus 698 ~l~~~~~--~~~~~~~~~---------~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 698 SLSIEGC--SKRTLISSL---------GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred hhhhccc--ccceeeccc---------ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh
Confidence 1111111 111111111 2455666666666644321110 1111 456666666666666666555
Q ss_pred CcccccceeeecCChhHHHHhhc
Q 042439 714 GLPSSLLQLYIGGCPLIAEKCRK 736 (766)
Q Consensus 714 ~~~~~L~~L~i~~~~~l~~~~~~ 736 (766)
.++++|+.|.+.+|+.+++....
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred hccCcccEEEEecccccccCCCH
Confidence 55666777777776666655443
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=1.6e-08 Score=92.34 Aligned_cols=108 Identities=25% Similarity=0.333 Sum_probs=31.8
Q ss_pred CCCCcceEEEEecCCCCCCccccCCCCCCeeEEEEecCCCCCCCCCCCCcCcccceeecCCCCceecCcccccCCCCCCC
Q 042439 96 PHEILEQFCISGYGGTKFPAWLGDSSLPNLVTLKFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPF 175 (766)
Q Consensus 96 ~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 175 (766)
.+.++++|+|.|+.+..+. .++ ..+.+|+.|++++|. ...++.+..+++|++|++++| .+++++..+... +
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~-~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N-~I~~i~~~l~~~-----l 87 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLG-ATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNN-RISSISEGLDKN-----L 87 (175)
T ss_dssp --------------------S---TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH------
T ss_pred ccccccccccccccccccc-chh-hhhcCCCEEECCCCC-CccccCccChhhhhhcccCCC-CCCccccchHHh-----C
Confidence 3446777777777777663 343 246778888888877 355666777777888888764 455554322211 6
Q ss_pred CCccEEeccCccchhhhhccCCCccccccCcccceecccccc
Q 042439 176 PCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCS 217 (766)
Q Consensus 176 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 217 (766)
|+|++|++++|..- ++. ....+..+++|+.|++.+||
T Consensus 88 p~L~~L~L~~N~I~-~l~----~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 88 PNLQELYLSNNKIS-DLN----ELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp TT--EEE-TTS----SCC----CCGGGGG-TT--EEE-TT-G
T ss_pred CcCCEEECcCCcCC-ChH----HhHHHHcCCCcceeeccCCc
Confidence 77777777776532 222 12344556777777776665
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=5.6e-09 Score=104.22 Aligned_cols=138 Identities=17% Similarity=0.114 Sum_probs=70.0
Q ss_pred CCCcceEEeccCcCcc-ccCccCCCCCCCCeeEecCCCCCC-CCCCCCCCCCcceeEeccccccchhhhhcccccCCCCC
Q 042439 560 CAKLSKLRIHGCERLE-ALPKGLHNLTSLQELTIGRGVELP-SLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSS 637 (766)
Q Consensus 560 ~~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~ 637 (766)
++.|+.|.+++|.+.. .+...+..+|+|+.|++..|..+. .-.....+..|++|||++|. .+..... .-.+.+|.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~--~~~~~l~~ 272 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQG--YKVGTLPG 272 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccc--cccccccc
Confidence 4455555555555431 112223345566666666553221 11122345566666666641 1111100 11566777
Q ss_pred CcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh--hhccCCCcceeecccCc
Q 042439 638 LRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS--SIVDLQNLTELYLEDCP 705 (766)
Q Consensus 638 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~ 705 (766)
|+.|+++.|......+|+. +.......+++|+.|.+.. |++..++. .+..+++|+.|.+..+.
T Consensus 273 L~~Lnls~tgi~si~~~d~----~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDV----ESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hhhhhccccCcchhcCCCc----cchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccccc
Confidence 7777777764333344432 1111124677888888887 56666664 55566777777766643
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.1e-08 Score=102.27 Aligned_cols=109 Identities=19% Similarity=0.302 Sum_probs=68.1
Q ss_pred CcCcccceeecCCCCceecCcccccCCCCCCCCCccEEeccCccchhhhhccCCCccccccCcccceecccccccccC--
Q 042439 144 QLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKG-- 221 (766)
Q Consensus 144 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-- 221 (766)
++.+|+...|+++. +...+.. .....|++++.|+++.|-. ..|.. +...+..+|+|+.|+++.|. +..
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~----~~~k~~~~v~~LdLS~NL~-~nw~~---v~~i~eqLp~Le~LNls~Nr-l~~~~ 188 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIE----EYSKILPNVRDLDLSRNLF-HNWFP---VLKIAEQLPSLENLNLSSNR-LSNFI 188 (505)
T ss_pred hHHhhhheeecCcc-ccccchh----hhhhhCCcceeecchhhhH-HhHHH---HHHHHHhcccchhccccccc-ccCCc
Confidence 56677777776643 3333321 1123478888888887743 23331 34566788999999998774 331
Q ss_pred --CCCCCCCCccEEEEecCCCcc----cccCCCCccceEEEcCCCCc
Q 042439 222 --PFPEHLPALEMLVIEGCEELS----VSVSSLPALCKLQIGGCKKV 262 (766)
Q Consensus 222 --~~p~~l~~L~~L~l~~~~~l~----~~~~~~~~L~~L~l~~~~~~ 262 (766)
.....+++|+.|.+++|..-. .....+|+|+.|++..|...
T Consensus 189 ~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~ 235 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII 235 (505)
T ss_pred cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc
Confidence 111257888888888887332 24445889999999888633
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=3.2e-08 Score=93.76 Aligned_cols=101 Identities=21% Similarity=0.215 Sum_probs=62.3
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEe
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRI 568 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 568 (766)
..|+++++++|.+ ..+.+...-.|.++.|++++|... .+ ..+..+++|+.|++++| .+..+..+-..+.+.++|.+
T Consensus 284 q~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccch-hhhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 4577777777553 344455555677777777777533 32 23666777777777776 44555444445667777777
Q ss_pred ccCcCccccCccCCCCCCCCeeEecCC
Q 042439 569 HGCERLEALPKGLHNLTSLQELTIGRG 595 (766)
Q Consensus 569 ~~~~~~~~~p~~~~~l~~L~~L~l~~~ 595 (766)
.+|.+ ..+ .+++.+.+|..||+++|
T Consensus 360 a~N~i-E~L-SGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 360 AQNKI-ETL-SGLRKLYSLVNLDLSSN 384 (490)
T ss_pred hhhhH-hhh-hhhHhhhhheecccccc
Confidence 77653 222 35566666777777666
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=6.6e-08 Score=91.70 Aligned_cols=126 Identities=19% Similarity=0.314 Sum_probs=81.3
Q ss_pred CCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcE
Q 042439 561 AKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQ 640 (766)
Q Consensus 561 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~ 640 (766)
+.|+++|+++|.+ ..+..++.-.|.++.|++++|. +..+.....+++|+.||+++| .+.....| -..+.+.++
T Consensus 284 q~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N--~Ls~~~Gw---h~KLGNIKt 356 (490)
T KOG1259|consen 284 QELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGN--LLAECVGW---HLKLGNIKT 356 (490)
T ss_pred hhhhhccccccch-hhhhhhhhhccceeEEeccccc-eeeehhhhhcccceEeecccc--hhHhhhhh---HhhhcCEee
Confidence 4677777777663 3444556667777777777773 333444566777777777775 22222222 245667777
Q ss_pred EEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh--hhccCCCcceeecccCcC
Q 042439 641 LRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS--SIVDLQNLTELYLEDCPK 706 (766)
Q Consensus 641 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~ 706 (766)
|.+++| .++++.. +..+.+|+.|++++ |+++.+.. +++++|-|+++.+.+||.
T Consensus 357 L~La~N--~iE~LSG----------L~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 357 LKLAQN--KIETLSG----------LRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eehhhh--hHhhhhh----------hHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCc
Confidence 777776 3444432 23567788888888 67777766 778888888888888763
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.45 E-value=6.5e-08 Score=88.32 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=36.5
Q ss_pred CCCCCEEEeeeCCCCCccccccc-CCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccC-CCCCCCCe
Q 042439 512 NTSLETIDICYCGNLKNLPSGLH-NLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGL-HNLTSLQE 589 (766)
Q Consensus 512 l~~L~~L~l~~~~~l~~lp~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~ 589 (766)
..++++|++.+|. +..+ +.+. .+.+|+.|++++| .+..++ ++..+++|++|++++|.+.. ++..+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~-I~~I-e~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQ-ISTI-ENLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred ccccccccccccc-cccc-cchhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence 3445666666653 2222 2333 3556666666666 334443 24455666666666665433 22222 24566666
Q ss_pred eEecCCC--CCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEec
Q 042439 590 LTIGRGV--ELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISG 645 (766)
Q Consensus 590 L~l~~~~--~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~ 645 (766)
|++++|. .+..+.....+++|+.|++.+| +..........-+..+|+|+.||-..
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEE
Confidence 6666653 2222333344566666666664 11111111111166778888887655
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.45 E-value=7.3e-09 Score=106.70 Aligned_cols=188 Identities=20% Similarity=0.288 Sum_probs=111.9
Q ss_pred eeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCc
Q 042439 493 SLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCE 572 (766)
Q Consensus 493 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~ 572 (766)
..+++.|. ...+|..+..|..|+.+.+..|. +..+|..+.++..|.+|+++.| .+..+|..+..+ -|+.|-+++|+
T Consensus 79 ~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNR-FSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVSNNK 154 (722)
T ss_pred hhhccccc-cccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEecCc
Confidence 34444433 23445555555556666666653 4455666666677777777666 556666655554 36666666654
Q ss_pred CccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCcc
Q 042439 573 RLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVS 652 (766)
Q Consensus 573 ~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 652 (766)
++.+|..++.++.|..|+.+.|.....++. +.++.+|+.|.+..| .+..
T Consensus 155 -l~~lp~~ig~~~tl~~ld~s~nei~slpsq----------------------------l~~l~slr~l~vrRn--~l~~ 203 (722)
T KOG0532|consen 155 -LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQ----------------------------LGYLTSLRDLNVRRN--HLED 203 (722)
T ss_pred -cccCCcccccchhHHHhhhhhhhhhhchHH----------------------------hhhHHHHHHHHHhhh--hhhh
Confidence 455566666666666666666543333333 555666666666654 4566
Q ss_pred CCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCC----CCcccccceeeecCC
Q 042439 653 FPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPE----KGLPSSLLQLYIGGC 727 (766)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~----~~~~~~L~~L~i~~~ 727 (766)
+|++.. -=.|.+|+++. |++..||..+..++.|++|.+++|| +++=|. .+..--.++|+++-|
T Consensus 204 lp~El~----------~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 204 LPEELC----------SLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCHHHh----------CCceeeeeccc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 666552 12467777765 7888888888888888888888765 454333 233344567777766
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.45 E-value=8.6e-07 Score=90.98 Aligned_cols=94 Identities=29% Similarity=0.515 Sum_probs=61.4
Q ss_pred cCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCC
Q 042439 509 LDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQ 588 (766)
Q Consensus 509 ~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 588 (766)
+..+.+++.|++++| .+..+|. -.++|++|.+++|..+..+|..+. ++|+.|++++|..+..+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 444678889999988 5777762 234788999988888887776443 4788888888866666653 466
Q ss_pred eeEecCCCCCCCCCCCCCCCCcceeEecc
Q 042439 589 ELTIGRGVELPSLEEDGLPTNLHSLWIAG 617 (766)
Q Consensus 589 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 617 (766)
.|++..+. ...+. ..|++|++|.+.+
T Consensus 116 ~L~L~~n~-~~~L~--~LPssLk~L~I~~ 141 (426)
T PRK15386 116 SLEIKGSA-TDSIK--NVPNGLTSLSINS 141 (426)
T ss_pred eEEeCCCC-Ccccc--cCcchHhheeccc
Confidence 66665432 11111 2445677776654
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.43 E-value=1.1e-06 Score=90.20 Aligned_cols=132 Identities=20% Similarity=0.444 Sum_probs=72.8
Q ss_pred CCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccc
Q 042439 452 SSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPS 531 (766)
Q Consensus 452 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~ 531 (766)
+.+++.|++++| .++.+ | . +|++|++|.+++|..+..+|..+ .++|+.|++++|..+..+|.
T Consensus 51 ~~~l~~L~Is~c-~L~sL-P--~------------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 51 ARASGRLYIKDC-DIESL-P--V------------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred hcCCCEEEeCCC-CCccc-C--C------------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 577888888887 56555 3 1 34568888887777766666544 35677777777755555553
Q ss_pred cccCCCCCCEEEecCCC--CccccCCCCCCCCCcceEEeccCcCccccCccCC-CC-CCCCeeEecCCCCCCCCCCCCCC
Q 042439 532 GLHNLHQLQEISIGRCG--NLESFPEGGLPCAKLSKLRIHGCERLEALPKGLH-NL-TSLQELTIGRGVELPSLEEDGLP 607 (766)
Q Consensus 532 ~l~~l~~L~~L~l~~~~--~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~-~l-~~L~~L~l~~~~~l~~~~~~~~~ 607 (766)
+|+.|+++++. .+..+|. +|+.|.+.++..... ..+. .+ ++|++|++++|..+..+ ...+
T Consensus 113 ------sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~--~~lp~~LPsSLk~L~Is~c~~i~LP--~~LP 176 (426)
T PRK15386 113 ------SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQ--ARIDNLISPSLKTLSLTGCSNIILP--EKLP 176 (426)
T ss_pred ------ccceEEeCCCCCcccccCcc------hHhheeccccccccc--cccccccCCcccEEEecCCCcccCc--cccc
Confidence 45556665432 2334443 556666543221100 0000 11 45666666666544321 1244
Q ss_pred CCcceeEecc
Q 042439 608 TNLHSLWIAG 617 (766)
Q Consensus 608 ~~L~~L~l~~ 617 (766)
.+|+.|+++.
T Consensus 177 ~SLk~L~ls~ 186 (426)
T PRK15386 177 ESLQSITLHI 186 (426)
T ss_pred ccCcEEEecc
Confidence 5666666655
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.4e-08 Score=94.62 Aligned_cols=64 Identities=9% Similarity=0.148 Sum_probs=40.7
Q ss_pred CCcceeeecCCCchh-hhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccc
Q 042439 489 PSLKSLHVLSCSKLE-SIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLES 552 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~ 552 (766)
..|+++++++..... .+...+..|.+|+.|.+.++..-..+...++.=.+|+.|+++.|..+..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~ 249 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE 249 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch
Confidence 347777777655544 3444556677777777777765555555666666777777777655443
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.38 E-value=5.8e-07 Score=101.14 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=81.9
Q ss_pred cceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEecc
Q 042439 491 LKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHG 570 (766)
Q Consensus 491 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 570 (766)
++.|++++|.....+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67777777777777777788888888888888877777777778888888888888877677777777778888888888
Q ss_pred CcCccccCccCCCC-CCCCeeEecCCCCCC
Q 042439 571 CERLEALPKGLHNL-TSLQELTIGRGVELP 599 (766)
Q Consensus 571 ~~~~~~~p~~~~~l-~~L~~L~l~~~~~l~ 599 (766)
|.+.+.+|..+... .++..+++.+|..+.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcccc
Confidence 88777777766543 455667777765443
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.38 E-value=2.7e-07 Score=99.11 Aligned_cols=170 Identities=24% Similarity=0.337 Sum_probs=78.7
Q ss_pred CCCCEEEeeeCCCCCcccccccCCC-CCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeE
Q 042439 513 TSLETIDICYCGNLKNLPSGLHNLH-QLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELT 591 (766)
Q Consensus 513 ~~L~~L~l~~~~~l~~lp~~l~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 591 (766)
+.++.|++.++. +..+|.....+. +|+.|++++| .+..+|.....+++|+.|++++|+. ..+|...+..+.|+.|+
T Consensus 116 ~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcc-cccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhhee
Confidence 445555555542 444444444342 5555555555 3344443344455555555555552 23333333555555555
Q ss_pred ecCCCCCCCCCCC-CCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCcc
Q 042439 592 IGRGVELPSLEED-GLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPA 670 (766)
Q Consensus 592 l~~~~~l~~~~~~-~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (766)
+++|. +..++.. ..+..|+++++++|. ....+..+..+.++..+.+.+| .+..++... ..++
T Consensus 193 ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-----~~~~~~~~~~~~~l~~l~l~~n--~~~~~~~~~---------~~l~ 255 (394)
T COG4886 193 LSGNK-ISDLPPEIELLSALEELDLSNNS-----IIELLSSLSNLKNLSGLELSNN--KLEDLPESI---------GNLS 255 (394)
T ss_pred ccCCc-cccCchhhhhhhhhhhhhhcCCc-----ceecchhhhhcccccccccCCc--eeeeccchh---------cccc
Confidence 55552 2222222 344445555555531 0111111444555555554443 222222222 2344
Q ss_pred ccceEEeccCCCCccchhhhccCCCcceeecccC
Q 042439 671 SLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDC 704 (766)
Q Consensus 671 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c 704 (766)
+++.|++++ +.+..++. +..+.+|+.|+++++
T Consensus 256 ~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 256 NLETLDLSN-NQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccceecccc-cccccccc-ccccCccCEEeccCc
Confidence 555666655 45555554 555566666666654
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.31 E-value=5.3e-07 Score=96.88 Aligned_cols=193 Identities=23% Similarity=0.270 Sum_probs=142.3
Q ss_pred CEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCC-CcceEEeccCcCccccCccCCCCCCCCeeEecC
Q 042439 516 ETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCA-KLSKLRIHGCERLEALPKGLHNLTSLQELTIGR 594 (766)
Q Consensus 516 ~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~-~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 594 (766)
..++...+...... ..+..++.++.|++.++ .+..++....... +|+.|++++|.+ ..+|..+..++.|+.|++++
T Consensus 96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccccCc-hhhhcccceeEEecCCc-ccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCC
Confidence 35777776543333 34555689999999998 6677777666664 999999999884 45556788999999999999
Q ss_pred CCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccce
Q 042439 595 GVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTS 674 (766)
Q Consensus 595 ~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 674 (766)
|+.....+..+..++|+.|++++| ....+|........|+++.+++|. ...++... ..+.++..
T Consensus 173 N~l~~l~~~~~~~~~L~~L~ls~N-----~i~~l~~~~~~~~~L~~l~~~~N~--~~~~~~~~---------~~~~~l~~ 236 (394)
T COG4886 173 NDLSDLPKLLSNLSNLNNLDLSGN-----KISDLPPEIELLSALEELDLSNNS--IIELLSSL---------SNLKNLSG 236 (394)
T ss_pred chhhhhhhhhhhhhhhhheeccCC-----ccccCchhhhhhhhhhhhhhcCCc--ceecchhh---------hhcccccc
Confidence 955444443448899999999997 233333223455669999999962 33344333 35667777
Q ss_pred EEeccCCCCccchhhhccCCCcceeecccCcCcccCCCCCcccccceeeecCChh
Q 042439 675 LLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPEKGLPSSLLQLYIGGCPL 729 (766)
Q Consensus 675 L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~~~~ 729 (766)
+.+.+ +.+..++..+..++++++|++++ +.+..++..+-..+++.|++.++..
T Consensus 237 l~l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 237 LELSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccCC-ceeeeccchhccccccceecccc-ccccccccccccCccCEEeccCccc
Confidence 77666 67777777889999999999999 5788888755578999999999755
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3e-08 Score=94.02 Aligned_cols=179 Identities=18% Similarity=0.187 Sum_probs=114.6
Q ss_pred CCCCceEEEecCCCCCCCccchhhHHHHhhcCCCCCCcceEEEEecCCCC-CCccccCCCCCCeeEEEEecCCCCCCCC-
Q 042439 63 KNLRELLLRWALNTDGSSSREAKTENDVLDMLKPHEILEQFCISGYGGTK-FPAWLGDSSLPNLVTLKFENCDMCTALP- 140 (766)
Q Consensus 63 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-lp~~~~~~~l~~L~~L~L~~~~~~~~l~- 140 (766)
+.|+.|+|+.. ..........+++|.+|+.|.|.|..... +-..+ +.-.+|+.|+|+.|...+...
T Consensus 185 sRlq~lDLS~s----------~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i--AkN~~L~~lnlsm~sG~t~n~~ 252 (419)
T KOG2120|consen 185 SRLQHLDLSNS----------VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI--AKNSNLVRLNLSMCSGFTENAL 252 (419)
T ss_pred hhhHHhhcchh----------heeHHHHHHHHHHHHhhhhccccccccCcHHHHHH--hccccceeeccccccccchhHH
Confidence 45788888532 22233355566788888888888876432 11222 345788888888887554433
Q ss_pred --CCCCcCcccceeecCCCCceecCcccccCCCCCCCCCccEEeccCccchhhhhccCCCccccccCcccceeccccccc
Q 042439 141 --SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSK 218 (766)
Q Consensus 141 --~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 218 (766)
-+..++.|..|+++.|...+.........+ -++|+.|+++++...-... .+......+|+|.+|++++|..
T Consensus 253 ~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi----se~l~~LNlsG~rrnl~~s---h~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI----SETLTQLNLSGYRRNLQKS---HLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred HHHHHhhhhHhhcCchHhhccchhhhHHHhhh----chhhhhhhhhhhHhhhhhh---HHHHHHHhCCceeeeccccccc
Confidence 157788888888888766555432222222 5778888888886421111 0233445688888888888876
Q ss_pred ccCCCC---CCCCCccEEEEecCCCcc----cccCCCCccceEEEcCCC
Q 042439 219 LKGPFP---EHLPALEMLVIEGCEELS----VSVSSLPALCKLQIGGCK 260 (766)
Q Consensus 219 l~~~~p---~~l~~L~~L~l~~~~~l~----~~~~~~~~L~~L~l~~~~ 260 (766)
++.... -.++.|++|.++.|..+. ..+...|+|.+|++.+|-
T Consensus 326 l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 326 LKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 663211 247888888888887543 356778888888888875
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.24 E-value=1.6e-07 Score=91.56 Aligned_cols=231 Identities=16% Similarity=0.112 Sum_probs=150.2
Q ss_pred CCcceeeecCCCchh----hhHhhcCCCCCCCEEEeeeCCCCCc----ccc-------cccCCCCCCEEEecCCCCcccc
Q 042439 489 PSLKSLHVLSCSKLE----SIAERLDNNTSLETIDICYCGNLKN----LPS-------GLHNLHQLQEISIGRCGNLESF 553 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~----lp~-------~l~~l~~L~~L~l~~~~~l~~l 553 (766)
..++++++++|..-. .+...+.+.++|+..++++- ..+. +|+ .+..+++|++|+||+|..-...
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 679999999998755 45566778889999999873 3433 233 4456789999999999654333
Q ss_pred CC----CCCCCCCcceEEeccCcCccccC-------------ccCCCCCCCCeeEecCCCCCCCCCC------CCCCCCc
Q 042439 554 PE----GGLPCAKLSKLRIHGCERLEALP-------------KGLHNLTSLQELTIGRGVELPSLEE------DGLPTNL 610 (766)
Q Consensus 554 ~~----~~~~~~~L~~L~l~~~~~~~~~p-------------~~~~~l~~L~~L~l~~~~~l~~~~~------~~~~~~L 610 (766)
+. -+.++..|++|.+.+|..-..-. .-..+-+.|+++..++|.. ...+. ....+.|
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl-en~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL-ENGGATALAEAFQSHPTL 187 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-ccccHHHHHHHHHhcccc
Confidence 22 23457899999999997432111 1234567899998888742 22221 1345789
Q ss_pred ceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCcc-----
Q 042439 611 HSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLER----- 685 (766)
Q Consensus 611 ~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~----- 685 (766)
+++.+..|-....-.......+.++++|+.||+..|.+.. -+.+....+++.++.|++|++++| .++.
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~------egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a 260 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL------EGSVALAKALSSWPHLRELNLGDC-LLENEGAIA 260 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh------HHHHHHHHHhcccchheeeccccc-ccccccHHH
Confidence 9999998743333222333448899999999999873221 122333344567788999999998 4432
Q ss_pred chhh-hccCCCcceeecccCcCcccCCC------CCcccccceeeecCChh
Q 042439 686 LSSS-IVDLQNLTELYLEDCPKLKYFPE------KGLPSSLLQLYIGGCPL 729 (766)
Q Consensus 686 l~~~-~~~l~~L~~L~l~~c~~l~~l~~------~~~~~~L~~L~i~~~~~ 729 (766)
+-.. -...|+|+.+.+.+|. ++.=.. ..--+.|.+|++.+|..
T Consensus 261 ~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2222 2347899999999964 443111 11157899999999864
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.21 E-value=2.5e-07 Score=90.22 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=29.3
Q ss_pred CCcceeeecCCCchh----hhHhhcCCCCCCCEEEeeeCCCCCc----ccccccCCCCCCEEEecCCC
Q 042439 489 PSLKSLHVLSCSKLE----SIAERLDNNTSLETIDICYCGNLKN----LPSGLHNLHQLQEISIGRCG 548 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~----lp~~l~~l~~L~~L~l~~~~ 548 (766)
+.|+++...+|..-. .+...|...+.|+.+.+..|.+... +...+.++++|++|++.+|.
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence 445555555444322 3444455555666666665543211 12234455555555555553
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.21 E-value=4.3e-08 Score=101.18 Aligned_cols=178 Identities=20% Similarity=0.234 Sum_probs=123.9
Q ss_pred CCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEec
Q 042439 537 HQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIA 616 (766)
Q Consensus 537 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~ 616 (766)
.--...+++.| ....+|..+..|..|+.+.+..|. ...+|..+.++..|.+++++.|..-.....+..+ -|+.|-++
T Consensus 75 tdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~s 151 (722)
T KOG0532|consen 75 TDTVFADLSRN-RFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVS 151 (722)
T ss_pred cchhhhhcccc-ccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEe
Confidence 33344555665 445566666666666666666655 3455666677777777777776433322222222 47777777
Q ss_pred cccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCc
Q 042439 617 GNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNL 696 (766)
Q Consensus 617 ~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L 696 (766)
+| .....|.+++..+.|.+|+.+.| ++.++|..++ .+.+|+.|.++. +++..+|..+. .-.|
T Consensus 152 NN-----kl~~lp~~ig~~~tl~~ld~s~n--ei~slpsql~---------~l~slr~l~vrR-n~l~~lp~El~-~LpL 213 (722)
T KOG0532|consen 152 NN-----KLTSLPEEIGLLPTLAHLDVSKN--EIQSLPSQLG---------YLTSLRDLNVRR-NHLEDLPEELC-SLPL 213 (722)
T ss_pred cC-----ccccCCcccccchhHHHhhhhhh--hhhhchHHhh---------hHHHHHHHHHhh-hhhhhCCHHHh-CCce
Confidence 75 33344555788889999999987 6888888773 678999999999 79999998887 5568
Q ss_pred ceeecccCcCcccCCC-CCcccccceeeecCChh---HHHHhhc
Q 042439 697 TELYLEDCPKLKYFPE-KGLPSSLLQLYIGGCPL---IAEKCRK 736 (766)
Q Consensus 697 ~~L~l~~c~~l~~l~~-~~~~~~L~~L~i~~~~~---l~~~~~~ 736 (766)
.+|+++. +++.++|. ..-+..|++|-+.+||. -..+|.+
T Consensus 214 i~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~k 256 (722)
T KOG0532|consen 214 IRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEK 256 (722)
T ss_pred eeeeccc-CceeecchhhhhhhhheeeeeccCCCCCChHHHHhc
Confidence 8999996 78999998 33478999999999987 3445543
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=3.1e-06 Score=95.37 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=75.8
Q ss_pred CCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEec
Q 042439 514 SLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIG 593 (766)
Q Consensus 514 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 593 (766)
.++.|++++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.+.+.+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788999988878888888899999999999987777888888888999999999999888888888999999999999
Q ss_pred CCCCCCCCC
Q 042439 594 RGVELPSLE 602 (766)
Q Consensus 594 ~~~~l~~~~ 602 (766)
+|.....+|
T Consensus 499 ~N~l~g~iP 507 (623)
T PLN03150 499 GNSLSGRVP 507 (623)
T ss_pred CCcccccCC
Confidence 886555554
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.04 E-value=9.1e-06 Score=60.55 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=35.8
Q ss_pred CCCCEEEecCCCCccccCC-CCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCC
Q 042439 537 HQLQEISIGRCGNLESFPE-GGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRG 595 (766)
Q Consensus 537 ~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 595 (766)
|+|++|++++| .+..+|. .+..+++|++|++++|.+....|..+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45666666666 4455554 4445666666666666655444556666777777777666
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.99 E-value=4.5e-06 Score=62.21 Aligned_cols=57 Identities=21% Similarity=0.366 Sum_probs=26.6
Q ss_pred CCCEEEeeeCCCCCccc-ccccCCCCCCEEEecCCCCccccC-CCCCCCCCcceEEeccCc
Q 042439 514 SLETIDICYCGNLKNLP-SGLHNLHQLQEISIGRCGNLESFP-EGGLPCAKLSKLRIHGCE 572 (766)
Q Consensus 514 ~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~ 572 (766)
+|++|++++|. +..+| ..+..+++|++|++++|.. ..++ ..+..+++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l-~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNL-TSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSSE-SEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCcc-CccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555542 33333 2444455555555555422 3333 234445555555555554
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=3.3e-06 Score=90.84 Aligned_cols=101 Identities=21% Similarity=0.280 Sum_probs=48.0
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEe
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRI 568 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 568 (766)
.+|+.+++.+|....... .+..+++|++|++++|. ++.+ .++..++.|+.|++++| .+..+.. +..+++|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~-I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNK-ITKL-EGLSTLTLLKELNLSGN-LISDISG-LESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhccc-chhhhhcchheeccccc-cccc-cchhhccchhhheeccC-cchhccC-CccchhhhcccC
Confidence 455555555554333111 13445556666666653 3232 23444555666666665 3333322 233455566666
Q ss_pred ccCcCccccC-ccCCCCCCCCeeEecCC
Q 042439 569 HGCERLEALP-KGLHNLTSLQELTIGRG 595 (766)
Q Consensus 569 ~~~~~~~~~p-~~~~~l~~L~~L~l~~~ 595 (766)
++|.+...-+ . ...+.+++.+++.+|
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhccCC
Confidence 6655332211 1 345555555555555
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.55 E-value=4.9e-06 Score=88.77 Aligned_cols=195 Identities=19% Similarity=0.168 Sum_probs=112.0
Q ss_pred CCCCCEEEeeeCCCCCcc-cccccCCCCCCEEEecCCCCccccCCCCCCC-CCcceEEeccCc---------CccccCcc
Q 042439 512 NTSLETIDICYCGNLKNL-PSGLHNLHQLQEISIGRCGNLESFPEGGLPC-AKLSKLRIHGCE---------RLEALPKG 580 (766)
Q Consensus 512 l~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~-~~L~~L~l~~~~---------~~~~~p~~ 580 (766)
+.+++.|.+-.-+.-+-. |-.+..+.+|+.|.+.+|+.-. .- ++..+ ..|+.|.-.+-- -.+++..+
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~-GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AK-GLQELRHQLEKLICHNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hh-hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc
Confidence 445555555443322222 5556667888888888884422 11 11110 122222211100 00111000
Q ss_pred CCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccc
Q 042439 581 LHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDI 660 (766)
Q Consensus 581 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 660 (766)
+ -...|...+.+.|.....-..+..++.++.|++++| ++.... .+..++.|++|||++|+ +..+|.-.
T Consensus 161 ~-~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN--k~~~v~----~Lr~l~~LkhLDlsyN~--L~~vp~l~--- 228 (1096)
T KOG1859|consen 161 P-VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHN--KFTKVD----NLRRLPKLKHLDLSYNC--LRHVPQLS--- 228 (1096)
T ss_pred h-hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh--hhhhhH----HHHhcccccccccccch--hccccccc---
Confidence 0 012344444554432222223456778889999986 222211 27889999999999985 55666533
Q ss_pred cccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCC---CCcccccceeeecCChh
Q 042439 661 RLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPE---KGLPSSLLQLYIGGCPL 729 (766)
Q Consensus 661 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~i~~~~~ 729 (766)
..--.|+.|.+++ |.++.+- .+.++.+|+.|++++| .+..... .+.+..|++|++.|||.
T Consensus 229 ------~~gc~L~~L~lrn-N~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 229 ------MVGCKLQLLNLRN-NALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ------hhhhhheeeeecc-cHHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 1223599999998 6888776 6889999999999994 5555444 33478899999999986
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.54 E-value=1.8e-05 Score=85.22 Aligned_cols=220 Identities=21% Similarity=0.216 Sum_probs=130.8
Q ss_pred ccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcc
Q 042439 450 YTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNL 529 (766)
Q Consensus 450 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 529 (766)
..+.+|+.+++.+. .++.+ . . .++. .++|++|++++|.+...-+ +..++.|+.|++++|. +..+
T Consensus 92 ~~~~~l~~l~l~~n-~i~~i-~--~---~l~~------~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~-i~~~ 155 (414)
T KOG0531|consen 92 SKLKSLEALDLYDN-KIEKI-E--N---LLSS------LVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNL-ISDI 155 (414)
T ss_pred ccccceeeeecccc-chhhc-c--c---chhh------hhcchheeccccccccccc--hhhccchhhheeccCc-chhc
Confidence 44888889998884 45544 1 1 0111 2779999999988766433 3446669999999986 4443
Q ss_pred cccccCCCCCCEEEecCCCCccccCCC-CCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCC
Q 042439 530 PSGLHNLHQLQEISIGRCGNLESFPEG-GLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPT 608 (766)
Q Consensus 530 p~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 608 (766)
..+..++.|+.+++++|.. ..+... ...+.+++.+++.+|.+... ..+..+..+..+++..| .+..+.......
T Consensus 156 -~~~~~l~~L~~l~l~~n~i-~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n-~i~~~~~l~~~~ 230 (414)
T KOG0531|consen 156 -SGLESLKSLKLLDLSYNRI-VDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDN-KISKLEGLNELV 230 (414)
T ss_pred -cCCccchhhhcccCCcchh-hhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccc-cceeccCcccch
Confidence 3566689999999999844 444332 35677899999999875432 23444445555566665 333333333333
Q ss_pred C--cceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCcc-
Q 042439 609 N--LHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLER- 685 (766)
Q Consensus 609 ~--L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~- 685 (766)
. |+++++++|. .... +..+..+.++..+++.+|. +..+.. ....+.+..++.... .+..
T Consensus 231 ~~~L~~l~l~~n~-i~~~----~~~~~~~~~l~~l~~~~n~--~~~~~~----------~~~~~~~~~~~~~~~-~~~~~ 292 (414)
T KOG0531|consen 231 MLHLRELYLSGNR-ISRS----PEGLENLKNLPVLDLSSNR--ISNLEG----------LERLPKLSELWLNDN-KLALS 292 (414)
T ss_pred hHHHHHHhcccCc-cccc----cccccccccccccchhhcc--cccccc----------ccccchHHHhccCcc-hhcch
Confidence 3 8888888852 1111 1226677888888888753 222111 123445555555552 3221
Q ss_pred --c-hh-hhccCCCcceeecccCcCcc
Q 042439 686 --L-SS-SIVDLQNLTELYLEDCPKLK 708 (766)
Q Consensus 686 --l-~~-~~~~l~~L~~L~l~~c~~l~ 708 (766)
. .. .....+.++...+..++.-.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 293 EAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhhhccccccccccccccccccCcccc
Confidence 1 11 24556777778887765433
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.53 E-value=6e-07 Score=95.47 Aligned_cols=107 Identities=24% Similarity=0.319 Sum_probs=56.2
Q ss_pred hhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCC
Q 042439 507 ERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTS 586 (766)
Q Consensus 507 ~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~ 586 (766)
..+.-++.|+.|++++|+.... ..+..+++|+.|||++| .+..+|.....-.+|..|.+++|..... .++.++.+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~Lks 255 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKS 255 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccc-hhccccccchhhhhheeeeecccHHHhh--hhHHhhhh
Confidence 3344455666666666653332 24555666666666666 4455554222112366666666653322 24556666
Q ss_pred CCeeEecCCCCC--CCCCCCCCCCCcceeEeccc
Q 042439 587 LQELTIGRGVEL--PSLEEDGLPTNLHSLWIAGN 618 (766)
Q Consensus 587 L~~L~l~~~~~l--~~~~~~~~~~~L~~L~l~~N 618 (766)
|+.||+++|-.. ..+..++.+..|+.|.+.+|
T Consensus 256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 666666665311 22223344556666666664
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=2.2e-05 Score=74.99 Aligned_cols=190 Identities=14% Similarity=0.098 Sum_probs=100.9
Q ss_pred CCCCCCEEEeeeCCCCC--cccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCc-cccCccCCCCCCC
Q 042439 511 NNTSLETIDICYCGNLK--NLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERL-EALPKGLHNLTSL 587 (766)
Q Consensus 511 ~l~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~-~~~p~~~~~l~~L 587 (766)
.++.++.+|+.+|.+.. ++-.-+.++|.|++|+++.|+.-..+...-.+..+|++|.+.+.... ......+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 35566777777765332 22223456777777777776443333221134557777777765432 1122344567777
Q ss_pred CeeEecCCC----CCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCccccccc
Q 042439 588 QELTIGRGV----ELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLG 663 (766)
Q Consensus 588 ~~L~l~~~~----~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 663 (766)
+.|+++.|. .+..-.....-+.++++..-. |....... .....+.+|++..+.+..| .+.+...+
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~-c~~~~w~~-~~~l~r~Fpnv~sv~v~e~--PlK~~s~e------- 217 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLP-CLEQLWLN-KNKLSRIFPNVNSVFVCEG--PLKTESSE------- 217 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCC-cHHHHHHH-HHhHHhhcccchheeeecC--cccchhhc-------
Confidence 777777762 111111111223444444444 33222111 1111345677777777664 22222211
Q ss_pred CCCCCccccceEEeccCCCCccchh--hhccCCCcceeecccCcCcccCCC
Q 042439 664 TALPLPASLTSLLIFSFPNLERLSS--SIVDLQNLTELYLEDCPKLKYFPE 712 (766)
Q Consensus 664 ~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~~ 712 (766)
.....++.+--|.+.. +++.++.+ .+..|++|..|.+.++|....+..
T Consensus 218 k~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred ccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 1123455666677776 57776654 777888888888888887666544
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=5.5e-05 Score=72.37 Aligned_cols=203 Identities=17% Similarity=0.126 Sum_probs=107.2
Q ss_pred cCCCCCcceeeecCCCchh--hhHhhcCCCCCCCEEEeeeCCCCCcccccc-cCCCCCCEEEecCCCCc-cccCCCCCCC
Q 042439 485 GNLPPSLKSLHVLSCSKLE--SIAERLDNNTSLETIDICYCGNLKNLPSGL-HNLHQLQEISIGRCGNL-ESFPEGGLPC 560 (766)
Q Consensus 485 ~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l-~~l~~L~~L~l~~~~~l-~~l~~~~~~~ 560 (766)
+...+.++++++.+|...+ ++...+.++|.|+.|+++.|+....+- .+ ..+.+|++|.+.+...- .........+
T Consensus 67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 3344789999999998766 677778899999999999987544331 12 34678999999875321 1222233456
Q ss_pred CCcceEEeccCcCcccc--CccCC-CCCCCCeeEecCCCCCCC--C-CCCCCCCCcceeEeccccccchhhhhcccccCC
Q 042439 561 AKLSKLRIHGCERLEAL--PKGLH-NLTSLQELTIGRGVELPS--L-EEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHR 634 (766)
Q Consensus 561 ~~L~~L~l~~~~~~~~~--p~~~~-~l~~L~~L~l~~~~~l~~--~-~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~ 634 (766)
|.+++|+++.|...... ..... --+.++.|+...|....- . .-...++++..+-+.. |+.-+...+-. ...
T Consensus 146 P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e-~PlK~~s~ek~--se~ 222 (418)
T KOG2982|consen 146 PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE-GPLKTESSEKG--SEP 222 (418)
T ss_pred hhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec-Ccccchhhccc--CCC
Confidence 78888888887321100 00111 112344444444421100 0 0012234566666665 33222222211 445
Q ss_pred CCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh------hhccCCCcceee
Q 042439 635 FSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS------SIVDLQNLTELY 700 (766)
Q Consensus 635 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~------~~~~l~~L~~L~ 700 (766)
+|.+-.|+++.++ ++++.....+..+++|..|.+.+.|-...+.. -++.+++++.|+
T Consensus 223 ~p~~~~LnL~~~~---------idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 223 FPSLSCLNLGANN---------IDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred CCcchhhhhcccc---------cccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 5555566666542 12222223344566677776666555554432 344556666554
No 53
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.33 E-value=1.6e-05 Score=88.21 Aligned_cols=241 Identities=26% Similarity=0.383 Sum_probs=139.6
Q ss_pred CCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCC-Cchh----hhHhhcCCCCCCCEEEeeeCCCC
Q 042439 452 SSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSC-SKLE----SIAERLDNNTSLETIDICYCGNL 526 (766)
Q Consensus 452 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~l 526 (766)
++.|+.+.+.+|..+.+. . +. ......+.|+.|++++| .... ........+++|+.|+++++..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~-~---~~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDD-S---LD------ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV 256 (482)
T ss_pred CchhhHhhhcccccCChh-h---HH------HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc
Confidence 567777888777766542 1 00 01122367888888763 2222 12233445678888888888754
Q ss_pred Ccc-ccccc-CCCCCCEEEecCCCCcc--ccCCCCCCCCCcceEEeccCcCccc--cCccCCCCCCCCeeEecCCCCCCC
Q 042439 527 KNL-PSGLH-NLHQLQEISIGRCGNLE--SFPEGGLPCAKLSKLRIHGCERLEA--LPKGLHNLTSLQELTIGRGVELPS 600 (766)
Q Consensus 527 ~~l-p~~l~-~l~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~l~~ 600 (766)
++. -..+. .+++|++|.+.+|..+. .+-.....+++|+.|++++|...+. +.....++++|+.|.+..+..
T Consensus 257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--- 333 (482)
T KOG1947|consen 257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--- 333 (482)
T ss_pred CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---
Confidence 432 12222 37788888888776432 2222334577888888888876532 222234466666655444322
Q ss_pred CCCCCCCCCcceeEeccccccch--hhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccc-eEEe
Q 042439 601 LEEDGLPTNLHSLWIAGNMEIWK--STIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLT-SLLI 677 (766)
Q Consensus 601 ~~~~~~~~~L~~L~l~~N~~~l~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l 677 (766)
+..++.+.+.+ +.... ...... ..++++++.+.+..+. ..... .+.+
T Consensus 334 ------c~~l~~~~l~~-~~~~~~d~~~~~~--~~~~~~l~~~~l~~~~---------------------~~~~~~~~~l 383 (482)
T KOG1947|consen 334 ------CPSLTDLSLSG-LLTLTSDDLAELI--LRSCPKLTDLSLSYCG---------------------ISDLGLELSL 383 (482)
T ss_pred ------CccHHHHHHHH-hhccCchhHhHHH--HhcCCCcchhhhhhhh---------------------ccCcchHHHh
Confidence 33455555544 32211 111111 6778888888888751 11112 4667
Q ss_pred ccCCCC-ccchhhhccCCCcceeecccCcCcccCCCCCc---ccccceeeecCChhHHHHhh
Q 042439 678 FSFPNL-ERLSSSIVDLQNLTELYLEDCPKLKYFPEKGL---PSSLLQLYIGGCPLIAEKCR 735 (766)
Q Consensus 678 ~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~i~~~~~l~~~~~ 735 (766)
.+|+.+ ..+......+..++.|.+..|...+....... ...++.+++.+|+.+.....
T Consensus 384 ~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 384 RGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred cCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 888888 44444445555699999999987665433111 56788999999988777654
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.24 E-value=0.0006 Score=61.90 Aligned_cols=105 Identities=16% Similarity=0.223 Sum_probs=75.7
Q ss_pred CCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccc
Q 042439 607 PTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERL 686 (766)
Q Consensus 607 ~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 686 (766)
..+...+|+++|. ..... .|.+++.|.+|.+++| .+..+.+.++ ..+++|..|.+.+ |.+..+
T Consensus 41 ~d~~d~iDLtdNd-l~~l~-----~lp~l~rL~tLll~nN--rIt~I~p~L~--------~~~p~l~~L~Ltn-Nsi~~l 103 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LRKLD-----NLPHLPRLHTLLLNNN--RITRIDPDLD--------TFLPNLKTLILTN-NSIQEL 103 (233)
T ss_pred ccccceecccccc-hhhcc-----cCCCccccceEEecCC--cceeeccchh--------hhccccceEEecC-cchhhh
Confidence 3456667777651 11111 1778899999999987 6777777663 5788999999999 688877
Q ss_pred hh--hhccCCCcceeecccCcCcccCCCCCc-----ccccceeeecCChh
Q 042439 687 SS--SIVDLQNLTELYLEDCPKLKYFPEKGL-----PSSLLQLYIGGCPL 729 (766)
Q Consensus 687 ~~--~~~~l~~L~~L~l~~c~~l~~l~~~~~-----~~~L~~L~i~~~~~ 729 (766)
.+ .+..||+|++|.+-+|+ ++....+.. +|+|+.||.++=..
T Consensus 104 ~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 104 GDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred hhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhhH
Confidence 65 67889999999999976 344444322 79999999887544
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.19 E-value=7.5e-05 Score=83.97 Aligned_cols=172 Identities=19% Similarity=0.140 Sum_probs=98.8
Q ss_pred CChhcccccccCCceeEecCCCCcCChhh---------hhhhcc--CCCCCCCceEEEecCCCCCCCccchhhHHHHhhc
Q 042439 25 SGLRELKLLTHLHGTLNISKLENVKCVGD---------AKEAQL--DGKKNLRELLLRWALNTDGSSSREAKTENDVLDM 93 (766)
Q Consensus 25 ~~~~~l~~L~~L~g~L~l~~l~~~~~~~~---------~~~~~l--~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 93 (766)
..++-+++-. |+ ++.+++++.+..... .....+ ..-.+|++|++++... ....++..
T Consensus 75 ~~~~~l~~~~-L~-sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~----------~s~~W~~k 142 (699)
T KOG3665|consen 75 QTLEMLRKQD-LE-SLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSEL----------FSNGWPKK 142 (699)
T ss_pred hHHHHHhhcc-cc-ccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccch----------hhccHHHH
Confidence 3444455554 66 777777655432111 111112 1246888899865332 33446655
Q ss_pred CC-CCCCcceEEEEecCCCCCC-ccccCCCCCCeeEEEEecCCCCCCCCCCCCcCcccceeecCCCCceec-CcccccCC
Q 042439 94 LK-PHEILEQFCISGYGGTKFP-AWLGDSSLPNLVTLKFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRL-GSEFYGND 170 (766)
Q Consensus 94 l~-~~~~L~~L~l~~~~~~~lp-~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~~~ 170 (766)
++ .+|+|++|.+.|-....-. ..++ .+|++|..||++++. ...+..+++|++|++|.+++...-..- -.+
T Consensus 143 ig~~LPsL~sL~i~~~~~~~~dF~~lc-~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe~e~~~~l~~----- 215 (699)
T KOG3665|consen 143 IGTMLPSLRSLVISGRQFDNDDFSQLC-ASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLEFESYQDLID----- 215 (699)
T ss_pred HhhhCcccceEEecCceecchhHHHHh-hccCccceeecCCCC-ccCcHHHhccccHHHHhccCCCCCchhhHHH-----
Confidence 55 4689999999875432110 1122 478999999999987 456666888999999998764422100 012
Q ss_pred CCCCCCCccEEeccCccchhhhhccCCCccccccCcccceeccccc
Q 042439 171 PPIPFPCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRC 216 (766)
Q Consensus 171 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c 216 (766)
+..+.+|+.||+|.-.....-..-.-...-...+|+|+.|+.++.
T Consensus 216 -LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 216 -LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred -HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 223888999999877654332100000112234888888888754
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.13 E-value=0.00054 Score=46.55 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=31.3
Q ss_pred cccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCC
Q 042439 670 ASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPE 712 (766)
Q Consensus 670 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 712 (766)
++|++|++++ ++++.+|..+.++++|++|++++| .+++++.
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 3678888888 588899877899999999999996 5666654
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.11 E-value=0.00024 Score=48.27 Aligned_cols=34 Identities=41% Similarity=0.470 Sum_probs=14.6
Q ss_pred CcceEEEEecCCCCCCccccCCCCCCeeEEEEecCC
Q 042439 99 ILEQFCISGYGGTKFPAWLGDSSLPNLVTLKFENCD 134 (766)
Q Consensus 99 ~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~ 134 (766)
+|++|+++++.+..+|..+ ..+++|+.|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l--~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPEL--SNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHG--TTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchH--hCCCCCCEEEecCCC
Confidence 4444444444444444433 234444444444444
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.01 E-value=0.00078 Score=61.17 Aligned_cols=95 Identities=25% Similarity=0.306 Sum_probs=57.1
Q ss_pred HhhcCCCCCCcceEEEEecCCCCCCccccCCCCCCeeEEEEecCCCC--CCCCCCCCcCcccceeecCCCCceecCcccc
Q 042439 90 VLDMLKPHEILEQFCISGYGGTKFPAWLGDSSLPNLVTLKFENCDMC--TALPSVGQLPSLKHLAVCGMSRVKRLGSEFY 167 (766)
Q Consensus 90 ~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~~~--~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 167 (766)
..+.|..+++|.+|.+..|.++.+...+. ..+++|.+|.|.+|.+. +++.++..+|+|++|.+-+++.-..-....+
T Consensus 56 ~l~~lp~l~rL~tLll~nNrIt~I~p~L~-~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~y 134 (233)
T KOG1644|consen 56 KLDNLPHLPRLHTLLLNNNRITRIDPDLD-TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLY 134 (233)
T ss_pred hcccCCCccccceEEecCCcceeeccchh-hhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeE
Confidence 45566667777777777777777755554 45677777777777643 4555677777777777766542222111100
Q ss_pred cCCCCCCCCCccEEeccCccc
Q 042439 168 GNDPPIPFPCLETLIFENMRE 188 (766)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~~ 188 (766)
....+|+|+.||+.....
T Consensus 135 ---vl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 135 ---VLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ---EEEecCcceEeehhhhhH
Confidence 023366666666666543
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.76 E-value=0.00043 Score=65.58 Aligned_cols=200 Identities=18% Similarity=0.083 Sum_probs=107.5
Q ss_pred ccCCCCCccEEEecCCCCCcccCC-----CCCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCccccc
Q 042439 377 SSLSLSSLREIEIYGCWSLVSFPE-----VALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYT 451 (766)
Q Consensus 377 ~~~~l~~L~~L~L~~~~~l~~~~~-----~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 451 (766)
.+..||+|+..+|++|..-...|. .+..+.|++|.+.+|. ++.+...-.. ..+.+|..+.-. ..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rig---kal~~la~nKKa-------a~ 155 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIG---KALFHLAYNKKA-------AD 155 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHH---HHHHHHHHHhhh-------cc
Confidence 456788888888888865544442 3346778888887765 5544433110 112233333211 23
Q ss_pred CCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchh-----hhHhhcCCCCCCCEEEeeeCCCC
Q 042439 452 SSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLE-----SIAERLDNNTSLETIDICYCGNL 526 (766)
Q Consensus 452 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~l 526 (766)
-|.|++.....+ ++... +.......+++ -..|+++.+..|.+-. .+...+..+.+|+.||+.+|.+.
T Consensus 156 kp~Le~vicgrN-Rleng-s~~~~a~~l~s------h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 156 KPKLEVVICGRN-RLENG-SKELSAALLES------HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred CCCceEEEeccc-hhccC-cHHHHHHHHHh------hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 456777776653 23222 11111111111 0468888888776543 23344566888888888888655
Q ss_pred Ccc----cccccCCCCCCEEEecCCCCccccC----CCC--CCCCCcceEEeccCcCccccCcc-----C--CCCCCCCe
Q 042439 527 KNL----PSGLHNLHQLQEISIGRCGNLESFP----EGG--LPCAKLSKLRIHGCERLEALPKG-----L--HNLTSLQE 589 (766)
Q Consensus 527 ~~l----p~~l~~l~~L~~L~l~~~~~l~~l~----~~~--~~~~~L~~L~l~~~~~~~~~p~~-----~--~~l~~L~~ 589 (766)
..- ...+..++.|++|.+.+|-....-. ..+ ...|+|..|...+|..-+.+-.. + .++|-|..
T Consensus 228 ~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~ 307 (388)
T COG5238 228 LEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVD 307 (388)
T ss_pred hhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHH
Confidence 332 3344557778888888883221110 001 12467788888777654432111 1 34556666
Q ss_pred eEecCC
Q 042439 590 LTIGRG 595 (766)
Q Consensus 590 L~l~~~ 595 (766)
|.+.+|
T Consensus 308 le~ngN 313 (388)
T COG5238 308 LERNGN 313 (388)
T ss_pred HHHccC
Confidence 666555
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.70 E-value=0.00017 Score=80.14 Aligned_cols=62 Identities=32% Similarity=0.531 Sum_probs=35.2
Q ss_pred ccceEEeccCCCCccchhhhccCCCcc-eeecccCcCcc-cCCCC-CcccccceeeecCChhHHH
Q 042439 671 SLTSLLIFSFPNLERLSSSIVDLQNLT-ELYLEDCPKLK-YFPEK-GLPSSLLQLYIGGCPLIAE 732 (766)
Q Consensus 671 ~L~~L~l~~~~~l~~l~~~~~~l~~L~-~L~l~~c~~l~-~l~~~-~~~~~L~~L~i~~~~~l~~ 732 (766)
.+..+.+.+|++++.+.-......... .+.+.+|+.++ .+... .....++.|+++.|...+.
T Consensus 352 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~ 416 (482)
T KOG1947|consen 352 DLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTD 416 (482)
T ss_pred hHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccc
Confidence 566666666666665554222233333 57777787773 22221 1123389999999876443
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.60 E-value=0.00094 Score=63.36 Aligned_cols=208 Identities=16% Similarity=0.064 Sum_probs=116.7
Q ss_pred CCcceeeecCCCchh----hhHhhcCCCCCCCEEEeeeCCCCCcc-----------cccccCCCCCCEEEecCCCCcccc
Q 042439 489 PSLKSLHVLSCSKLE----SIAERLDNNTSLETIDICYCGNLKNL-----------PSGLHNLHQLQEISIGRCGNLESF 553 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~l-----------p~~l~~l~~L~~L~l~~~~~l~~l 553 (766)
..+.++++++|.+-+ .+...+.+-.+|+..++++- ..+.. .+.+..||+|+..++|+|..-...
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 568888899888755 34455667778888888764 23321 224556888899999888665555
Q ss_pred CCC----CCCCCCcceEEeccCcCccccCc--------------cCCCCCCCCeeEecCCCCCCCCCC-----CCCCCCc
Q 042439 554 PEG----GLPCAKLSKLRIHGCERLEALPK--------------GLHNLTSLQELTIGRGVELPSLEE-----DGLPTNL 610 (766)
Q Consensus 554 ~~~----~~~~~~L~~L~l~~~~~~~~~p~--------------~~~~l~~L~~L~l~~~~~l~~~~~-----~~~~~~L 610 (766)
|.. +.+-+.|+.|.+++|. +|.+.. -..+-|.|+.....+|..-..... ...-.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 442 3345688888888876 333211 123457788887777742211110 1122577
Q ss_pred ceeEeccccccchh-hhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCcc----
Q 042439 611 HSLWIAGNMEIWKS-TIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLER---- 685 (766)
Q Consensus 611 ~~L~l~~N~~~l~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---- 685 (766)
+++.+..|-..-.- ..-.-..+..+.+|+.||+..|.+.. .+...+..++...+.|++|.+.+| .+..
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~------~gS~~La~al~~W~~lrEL~lnDC-lls~~G~~ 260 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL------EGSRYLADALCEWNLLRELRLNDC-LLSNEGVK 260 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh------hhHHHHHHHhcccchhhhccccch-hhccccHH
Confidence 88888776221110 00011125677888888888763211 011111122233455778888777 3321
Q ss_pred -chh--hhccCCCcceeecccCc
Q 042439 686 -LSS--SIVDLQNLTELYLEDCP 705 (766)
Q Consensus 686 -l~~--~~~~l~~L~~L~l~~c~ 705 (766)
+-. .-...|+|..|-..+|.
T Consensus 261 ~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 261 SVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred HHHHHhhhhcCCCccccccchhh
Confidence 111 11235777777777754
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.59 E-value=0.0012 Score=74.40 Aligned_cols=135 Identities=21% Similarity=0.226 Sum_probs=63.9
Q ss_pred cccceecccccccccCC----CCCCCCCccEEEEecCC----CcccccCCCCccceEEEcCCCCceeeccccccCCCCce
Q 042439 206 PKLRELHILRCSKLKGP----FPEHLPALEMLVIEGCE----ELSVSVSSLPALCKLQIGGCKKVVWESATGHLGSQNSV 277 (766)
Q Consensus 206 ~~L~~L~l~~c~~l~~~----~p~~l~~L~~L~l~~~~----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 277 (766)
.+|++|++++-..+... +...+|.|+.|.+++-. ........+|+|..|+|++++.....+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G----------- 190 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG----------- 190 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH-----------
Confidence 45566665553322211 11245666666665522 222345567777777777776443321
Q ss_pred eeccCCccccccCCCCCCCCCccEEEecccCCccchhcccCccccCCCCCCEEEEccCCCccccchhhhHHHHhhhhhcc
Q 042439 278 VCRDASNQVFLAGPLKPQLPKLEELEINDMKEHTYIWKSHNGLLQDSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELS 357 (766)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~ 357 (766)
.++|++|+.+.+.+..+........+..+.+|+.||+|.-.....- ......-..+..+
T Consensus 191 ------------------IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~---~ii~qYlec~~~L 249 (699)
T KOG3665|consen 191 ------------------ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT---KIIEQYLECGMVL 249 (699)
T ss_pred ------------------HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch---HHHHHHHHhcccC
Confidence 2344444444443333311122234566778888888764433221 0101111112234
Q ss_pred CcccEEEeecCCCCc
Q 042439 358 CRLEYLRLSGCQGLV 372 (766)
Q Consensus 358 ~~L~~L~L~~~~~~~ 372 (766)
|+|+.||.++..+.+
T Consensus 250 peLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 250 PELRFLDCSGTDINE 264 (699)
T ss_pred ccccEEecCCcchhH
Confidence 566666666555433
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.98 E-value=0.00058 Score=57.82 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=40.9
Q ss_pred cCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCc
Q 042439 632 FHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCP 705 (766)
Q Consensus 632 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 705 (766)
+.....|+..++++| .+..||+.+. ..++..+.|++.+ +.+..+|..+..+|.|+.|+++.|+
T Consensus 49 l~~~~el~~i~ls~N--~fk~fp~kft--------~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 49 LSKGYELTKISLSDN--GFKKFPKKFT--------IKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred HhCCceEEEEecccc--hhhhCCHHHh--------hccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCc
Confidence 444456666677765 5666666552 3455667777776 5777777777777777777777754
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.92 E-value=0.0029 Score=60.23 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=40.9
Q ss_pred CCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCC--CCccccCCCCCCCCCcceEEeccCcCc--cccCccCCCCC
Q 042439 510 DNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRC--GNLESFPEGGLPCAKLSKLRIHGCERL--EALPKGLHNLT 585 (766)
Q Consensus 510 ~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~--~~l~~l~~~~~~~~~L~~L~l~~~~~~--~~~p~~~~~l~ 585 (766)
..+..|+.|.+.++... ++ ..+..+++|++|.++.| .....++.....+|+|+++.+++|++. ..+ ..+..+.
T Consensus 40 d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELE 116 (260)
T ss_pred ccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhc
Confidence 33455555555554322 22 13444666666666666 333344433344566666666666532 111 1233444
Q ss_pred CCCeeEecCC
Q 042439 586 SLQELTIGRG 595 (766)
Q Consensus 586 ~L~~L~l~~~ 595 (766)
+|..|++.+|
T Consensus 117 nL~~Ldl~n~ 126 (260)
T KOG2739|consen 117 NLKSLDLFNC 126 (260)
T ss_pred chhhhhcccC
Confidence 5555555555
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.25 E-value=0.0016 Score=55.23 Aligned_cols=102 Identities=19% Similarity=0.258 Sum_probs=59.0
Q ss_pred cceeeecCCCch--hhhHhhcCCCCCCCEEEeeeCCCCCccccccc-CCCCCCEEEecCCCCccccCCCCCCCCCcceEE
Q 042439 491 LKSLHVLSCSKL--ESIAERLDNNTSLETIDICYCGNLKNLPSGLH-NLHQLQEISIGRCGNLESFPEGGLPCAKLSKLR 567 (766)
Q Consensus 491 L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 567 (766)
+..++++.|... ...+..+.....|+..++++|. ...+|+.+. .++.++.|++.+| .+..+|..+..++.|+.++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 444555555432 1233334445566666777763 444554443 3557777777776 5666776666677777777
Q ss_pred eccCcCccccCccCCCCCCCCeeEecCC
Q 042439 568 IHGCERLEALPKGLHNLTSLQELTIGRG 595 (766)
Q Consensus 568 l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 595 (766)
++.|++. ..|..+..+.+|-.|+..+|
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCC
Confidence 7776643 33444445666666666555
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=0.0024 Score=60.94 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=35.8
Q ss_pred CccccceEEeccCCCCccchh--hhccCCCcceeecccCcCcccCCC-C-----Ccccccceee
Q 042439 668 LPASLTSLLIFSFPNLERLSS--SIVDLQNLTELYLEDCPKLKYFPE-K-----GLPSSLLQLY 723 (766)
Q Consensus 668 ~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l~~-~-----~~~~~L~~L~ 723 (766)
..++|++|+|.. |.|.++.+ .+.++|+|+.|.|..||-...-+. + ..+|+|++||
T Consensus 61 rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 61 RCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 344555555555 45666554 567888888888888876555444 1 1268888886
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.62 E-value=0.025 Score=54.00 Aligned_cols=15 Identities=27% Similarity=0.078 Sum_probs=8.7
Q ss_pred hccCCCcceeecccC
Q 042439 690 IVDLQNLTELYLEDC 704 (766)
Q Consensus 690 ~~~l~~L~~L~l~~c 704 (766)
+.-+++|+.|+-.++
T Consensus 139 f~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHhhhhcccccccc
Confidence 344566666666554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.18 E-value=0.0018 Score=61.70 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=38.0
Q ss_pred CcceEEEEecCCCCCCccccCCCCCCeeEEEEecCCCCCCCCCCCCcCcccceeecCCCCceecCcccccCCCCCCCCCc
Q 042439 99 ILEQFCISGYGGTKFPAWLGDSSLPNLVTLKFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCL 178 (766)
Q Consensus 99 ~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L 178 (766)
+.+.|+.-|+.+..+.- . ..++.|++|.|+-|. ...+.++.++++|++|+|+.| .|.++..-++ +..+|+|
T Consensus 20 ~vkKLNcwg~~L~DIsi--c-~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN-~I~sldEL~Y----LknlpsL 90 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI--C-EKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKN-CIESLDELEY----LKNLPSL 90 (388)
T ss_pred HhhhhcccCCCccHHHH--H-HhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhc-ccccHHHHHH----HhcCchh
Confidence 44445555554443311 1 245556666666655 345555566666666666553 2333221111 1125555
Q ss_pred cEEeccCcc
Q 042439 179 ETLIFENMR 187 (766)
Q Consensus 179 ~~L~l~~~~ 187 (766)
+.|.|..|+
T Consensus 91 r~LWL~ENP 99 (388)
T KOG2123|consen 91 RTLWLDENP 99 (388)
T ss_pred hhHhhccCC
Confidence 555555554
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.76 E-value=0.25 Score=43.15 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=12.3
Q ss_pred ccCCCCCCEEEecCCCCccccCC-CCCCCCCcceEEec
Q 042439 533 LHNLHQLQEISIGRCGNLESFPE-GGLPCAKLSKLRIH 569 (766)
Q Consensus 533 l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~ 569 (766)
+..+++|+.+.+.++ +..++. .+..+++++.+.+.
T Consensus 31 F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEET
T ss_pred ccccccccccccccc--ccccceeeeeccccccccccc
Confidence 334445555555442 333332 22233345555553
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=0.013 Score=53.60 Aligned_cols=86 Identities=17% Similarity=0.199 Sum_probs=53.8
Q ss_pred CCeeEEEEecCCCC-CCCCCCCCcCcccceeecCCCCceecCcccccCCCCCCCCCccEEeccCccchhhhhccCCCccc
Q 042439 123 PNLVTLKFENCDMC-TALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCLETLIFENMREWEDWISHGSSQRV 201 (766)
Q Consensus 123 ~~L~~L~L~~~~~~-~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 201 (766)
..++.++-+++.+. .-+..+..++.++.|.+.+|..+.+...+..+.. +++|+.|++++|+.+.+-. ...
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~----~~~L~~L~lsgC~rIT~~G-----L~~ 171 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGL----APSLQDLDLSGCPRITDGG-----LAC 171 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhccc----ccchheeeccCCCeechhH-----HHH
Confidence 44677776666532 2233466777777777777777777666655543 7777777777777654321 223
Q ss_pred cccCcccceecccccc
Q 042439 202 VEGFPKLRELHILRCS 217 (766)
Q Consensus 202 ~~~l~~L~~L~l~~c~ 217 (766)
+..+++|+.|.+.+-+
T Consensus 172 L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHhhhhHHHHhcCch
Confidence 4556777777765543
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.31 E-value=0.32 Score=42.44 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=28.5
Q ss_pred cCCCCCCCEEEeeeCCCCCccc-ccccCCCCCCEEEecCCCCccccCC-CCCCCCCcceEEeccCcCcccc-CccCCCCC
Q 042439 509 LDNNTSLETIDICYCGNLKNLP-SGLHNLHQLQEISIGRCGNLESFPE-GGLPCAKLSKLRIHGCERLEAL-PKGLHNLT 585 (766)
Q Consensus 509 ~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~ 585 (766)
|.++++|+.+.+.++ +..++ ..+.++++++.+.+.+ .+..++. .+..+++|+.+++..+ ...+ ...+.++
T Consensus 31 F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~- 103 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC- 103 (129)
T ss_dssp TTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--
T ss_pred ccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccccccccccCcc--ccEEchhhhcCC-
Confidence 444445555555442 32222 2334444555555543 2223332 2233555665555442 1122 2334444
Q ss_pred CCCeeEecC
Q 042439 586 SLQELTIGR 594 (766)
Q Consensus 586 ~L~~L~l~~ 594 (766)
.|+.+.+..
T Consensus 104 ~l~~i~~~~ 112 (129)
T PF13306_consen 104 NLKEINIPS 112 (129)
T ss_dssp T--EEE-TT
T ss_pred CceEEEECC
Confidence 555555543
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.78 E-value=0.031 Score=51.20 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=52.2
Q ss_pred CcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCC--C-CCCCCCcceeEeccccccchhhhhcccccCCCCCC
Q 042439 562 KLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLE--E-DGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSL 638 (766)
Q Consensus 562 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~--~-~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L 638 (766)
.++.++-+++.+...--..+..+++++.|.+.+|..+.... . .+..++|+.|+|++ |..++..+-.- +..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsg-C~rIT~~GL~~--L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSG-CPRITDGGLAC--LLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccC-CCeechhHHHH--HHHhhhh
Confidence 56777777776665555556777888888888887655432 1 12456777888877 76666544322 5666677
Q ss_pred cEEEEec
Q 042439 639 RQLRISG 645 (766)
Q Consensus 639 ~~L~l~~ 645 (766)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 7666654
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.55 E-value=0.17 Score=28.29 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=4.7
Q ss_pred cceEEeccCc
Q 042439 563 LSKLRIHGCE 572 (766)
Q Consensus 563 L~~L~l~~~~ 572 (766)
|++|++++|.
T Consensus 2 L~~Ldls~n~ 11 (22)
T PF00560_consen 2 LEYLDLSGNN 11 (22)
T ss_dssp ESEEEETSSE
T ss_pred ccEEECCCCc
Confidence 4444444443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.38 E-value=0.17 Score=26.25 Aligned_cols=10 Identities=40% Similarity=0.444 Sum_probs=3.9
Q ss_pred CcceeecccC
Q 042439 695 NLTELYLEDC 704 (766)
Q Consensus 695 ~L~~L~l~~c 704 (766)
+|+.|+|++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3444444443
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.26 E-value=0.16 Score=28.43 Aligned_cols=19 Identities=47% Similarity=0.581 Sum_probs=9.9
Q ss_pred ccEEEeecCCCCcccCcccC
Q 042439 360 LEYLRLSGCQGLVKLPQSSL 379 (766)
Q Consensus 360 L~~L~L~~~~~~~~~~~~~~ 379 (766)
|++|++++|.+. .+|..++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 556666666533 5554433
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=79.75 E-value=1.2 Score=26.05 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=9.0
Q ss_pred CCcceeecccCcCccc
Q 042439 694 QNLTELYLEDCPKLKY 709 (766)
Q Consensus 694 ~~L~~L~l~~c~~l~~ 709 (766)
++|++|+|++|+++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 5556666666655443
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=76.86 E-value=1.4 Score=25.74 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=13.8
Q ss_pred CCcceEEEEecCCCCCCccc
Q 042439 98 EILEQFCISGYGGTKFPAWL 117 (766)
Q Consensus 98 ~~L~~L~l~~~~~~~lp~~~ 117 (766)
++|++|++.+|.+..+|...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 46777777777777776654
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=76.86 E-value=1.4 Score=25.74 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=13.8
Q ss_pred CCcceEEEEecCCCCCCccc
Q 042439 98 EILEQFCISGYGGTKFPAWL 117 (766)
Q Consensus 98 ~~L~~L~l~~~~~~~lp~~~ 117 (766)
++|++|++.+|.+..+|...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 46777777777777776654
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=54.05 E-value=8.2 Score=22.62 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=6.1
Q ss_pred cceeecccCcCcccCC
Q 042439 696 LTELYLEDCPKLKYFP 711 (766)
Q Consensus 696 L~~L~l~~c~~l~~l~ 711 (766)
|+.|++++ ++++++|
T Consensus 4 L~~L~vs~-N~Lt~LP 18 (26)
T smart00364 4 LKELNVSN-NQLTSLP 18 (26)
T ss_pred cceeecCC-CccccCc
Confidence 44444444 2344444
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=54.05 E-value=0.16 Score=55.02 Aligned_cols=106 Identities=20% Similarity=0.174 Sum_probs=50.4
Q ss_pred cceeeecCCCchh----hhHhhcCCCCCCCEEEeeeCCCCCcc----cccccCC-CCCCEEEecCCCCcc----ccCCCC
Q 042439 491 LKSLHVLSCSKLE----SIAERLDNNTSLETIDICYCGNLKNL----PSGLHNL-HQLQEISIGRCGNLE----SFPEGG 557 (766)
Q Consensus 491 L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~l----p~~l~~l-~~L~~L~l~~~~~l~----~l~~~~ 557 (766)
+..+.+.+|.... .+-..+...+.|+.|++++|.....- -..+... ..+++|++..|.... .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4444455444333 33444555666777777776543211 1112222 455556666653322 122223
Q ss_pred CCCCCcceEEeccCcCccc----cCccC----CCCCCCCeeEecCCC
Q 042439 558 LPCAKLSKLRIHGCERLEA----LPKGL----HNLTSLQELTIGRGV 596 (766)
Q Consensus 558 ~~~~~L~~L~l~~~~~~~~----~p~~~----~~l~~L~~L~l~~~~ 596 (766)
.....++.++++.|.+... ++..+ ....++++|.+.+|.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~ 215 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCG 215 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcC
Confidence 3345666666666654311 11222 235566666666663
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=47.03 E-value=14 Score=20.90 Aligned_cols=12 Identities=8% Similarity=0.221 Sum_probs=5.5
Q ss_pred CCccEEEecCCC
Q 042439 382 SSLREIEIYGCW 393 (766)
Q Consensus 382 ~~L~~L~L~~~~ 393 (766)
++|++|+|++|+
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 455556665553
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.91 E-value=6.1 Score=42.53 Aligned_cols=67 Identities=24% Similarity=0.267 Sum_probs=32.6
Q ss_pred CCCCeeEEEEecCCCC--CCCCCC-CCcCcccceeecCCCCceecCcccccCCCCCCCCCccEEeccCccchhh
Q 042439 121 SLPNLVTLKFENCDMC--TALPSV-GQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCLETLIFENMREWED 191 (766)
Q Consensus 121 ~l~~L~~L~L~~~~~~--~~l~~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 191 (766)
.++.+..+.|++|++. +.+.++ ...|+|+.|+|++|...-....+.. ......|++|.+.+|+..+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~----K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELD----KLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhh----hhcCCCHHHeeecCCccccc
Confidence 5666777777777642 222222 3456666666666521111111111 12245566666666665443
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=33.43 E-value=1.1 Score=48.80 Aligned_cols=275 Identities=21% Similarity=0.131 Sum_probs=142.6
Q ss_pred ccCCceeEEEecCCCCccccccCCCCccccccccccCCC-CCcceeeecCCCchh----hhHhhcCCCCCCCEEEeeeCC
Q 042439 450 YTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLP-PSLKSLHVLSCSKLE----SIAERLDNNTSLETIDICYCG 524 (766)
Q Consensus 450 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~ 524 (766)
...+.|+.|+++++..- .. ....+.. ....+ ..+++|.+..|.... .+...+.....++.++++.|.
T Consensus 112 ~t~~~L~~L~l~~n~l~-~~-g~~~l~~------~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 112 KTLPTLGQLDLSGNNLG-DE-GARLLCE------GLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNG 183 (478)
T ss_pred cccccHhHhhcccCCCc-cH-hHHHHHh------hcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcc
Confidence 34788999999886421 11 0000000 11122 457778888887655 456667778889999999987
Q ss_pred CCCc----cccccc----CCCCCCEEEecCCCCccc----cCCCCCCCCC-cceEEeccCcCccc----cCccCCCC-CC
Q 042439 525 NLKN----LPSGLH----NLHQLQEISIGRCGNLES----FPEGGLPCAK-LSKLRIHGCERLEA----LPKGLHNL-TS 586 (766)
Q Consensus 525 ~l~~----lp~~l~----~l~~L~~L~l~~~~~l~~----l~~~~~~~~~-L~~L~l~~~~~~~~----~p~~~~~l-~~ 586 (766)
.... ++..+. ...++++|.+.+|..... +...+...+. ++++++..|..-.. +.+.+..+ ..
T Consensus 184 l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~ 263 (478)
T KOG4308|consen 184 LIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSET 263 (478)
T ss_pred cchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchh
Confidence 5421 133333 477899999998854321 1111222334 77788888875433 23344555 67
Q ss_pred CCeeEecCCCCCCCCC-----CCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccC--------
Q 042439 587 LQELTIGRGVELPSLE-----EDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSF-------- 653 (766)
Q Consensus 587 L~~L~l~~~~~l~~~~-----~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------- 653 (766)
+++++++.|.....-. ....++.++++.++.|...-......-.....-..+..+.+.+++......
T Consensus 264 l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 343 (478)
T KOG4308|consen 264 LRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEAD 343 (478)
T ss_pred hhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHH
Confidence 8889999886443221 113455888888888522111111111113334455555555432111000
Q ss_pred -----CCCcc----------cccccCCC-CCccccceEEeccCCCCc----cchhhhccCCCcceeecccCcCcccCCC-
Q 042439 654 -----PPKAD----------DIRLGTAL-PLPASLTSLLIFSFPNLE----RLSSSIVDLQNLTELYLEDCPKLKYFPE- 712 (766)
Q Consensus 654 -----~~~~~----------~~~~~~~~-~~~~~L~~L~l~~~~~l~----~l~~~~~~l~~L~~L~l~~c~~l~~l~~- 712 (766)
+...+ ........ ...+.+..+++..+..-. .+.......+.+++++++.|.-......
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~ 423 (478)
T KOG4308|consen 344 AQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEV 423 (478)
T ss_pred HHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHH
Confidence 00000 00000111 122336666666543222 2333556678888888887543332222
Q ss_pred ----CCcccccceeeecCChhHHH
Q 042439 713 ----KGLPSSLLQLYIGGCPLIAE 732 (766)
Q Consensus 713 ----~~~~~~L~~L~i~~~~~l~~ 732 (766)
......++.++++.++.-..
T Consensus 424 l~~~~~~~~~~~~~~l~~~~~~~~ 447 (478)
T KOG4308|consen 424 LTEQLSRNGSLKALRLSRNPITAL 447 (478)
T ss_pred HHHhhhhcccchhhhhccChhhhc
Confidence 11122788888888876443
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=32.37 E-value=25 Score=20.68 Aligned_cols=12 Identities=25% Similarity=0.335 Sum_probs=5.8
Q ss_pred CCeeEEEEecCC
Q 042439 123 PNLVTLKFENCD 134 (766)
Q Consensus 123 ~~L~~L~L~~~~ 134 (766)
++|+.|+++.|.
T Consensus 2 ~~L~~L~L~~Nk 13 (26)
T smart00365 2 TNLEELDLSQNK 13 (26)
T ss_pred CccCEEECCCCc
Confidence 344555555544
No 85
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=27.71 E-value=78 Score=21.23 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=16.6
Q ss_pred CCcceeecccCcCcccCCCCCcccccceeeecC
Q 042439 694 QNLTELYLEDCPKLKYFPEKGLPSSLLQLYIGG 726 (766)
Q Consensus 694 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~ 726 (766)
+++++|.+.+ ..-+.+....+|++|++|.++.
T Consensus 12 ~~l~~L~~g~-~fn~~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGS-SFNQPIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECC-ccCccCCCCccCCCceEEEeeC
Confidence 4555566633 2223344444566777766653
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.52 E-value=30 Score=37.53 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=5.2
Q ss_pred CCceeEEEecC
Q 042439 452 SSLLEKLEIES 462 (766)
Q Consensus 452 ~~~L~~L~l~~ 462 (766)
.+.+..+.+++
T Consensus 217 ~p~i~sl~lsn 227 (585)
T KOG3763|consen 217 FPEILSLSLSN 227 (585)
T ss_pred Ccceeeeeccc
Confidence 44444444444
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=25.00 E-value=41 Score=19.96 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=5.8
Q ss_pred CeeEEEEecCC
Q 042439 124 NLVTLKFENCD 134 (766)
Q Consensus 124 ~L~~L~L~~~~ 134 (766)
+|++|+|++|.
T Consensus 3 ~L~~LdL~~N~ 13 (28)
T smart00368 3 SLRELDLSNNK 13 (28)
T ss_pred ccCEEECCCCC
Confidence 45555555554
Done!