Query 042439
Match_columns 766
No_of_seqs 430 out of 3588
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 10:25:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.9E-50 2.7E-54 464.4 28.1 630 2-752 70-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 7.3E-47 2.5E-51 439.5 19.3 583 55-730 69-717 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1E-39 3.4E-44 376.5 36.7 560 34-729 25-621 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4.1E-38 1.4E-42 363.0 37.4 577 99-763 26-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 3.1E-36 1.1E-40 342.7 35.1 521 102-729 16-559 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 3.7E-36 1.3E-40 342.1 33.5 498 98-705 32-556 (606)
7 3t6q_A CD180 antigen; protein- 100.0 8.8E-36 3E-40 338.9 35.5 504 99-708 34-561 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 9.7E-35 3.3E-39 330.3 32.7 507 63-681 32-556 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 7.6E-33 2.6E-37 325.1 38.7 526 102-763 8-564 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-31 4.2E-36 314.8 43.4 285 358-707 266-560 (844)
11 2z81_A CD282 antigen, TOLL-lik 100.0 7.9E-32 2.7E-36 302.6 31.1 475 103-706 10-509 (549)
12 2z63_A TOLL-like receptor 4, v 100.0 6.9E-32 2.3E-36 304.8 28.8 484 98-711 28-535 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-31 5E-36 300.5 26.6 463 98-687 26-514 (549)
14 4eco_A Uncharacterized protein 100.0 2.3E-32 7.7E-37 310.2 17.6 320 244-617 201-545 (636)
15 2z7x_B TOLL-like receptor 1, v 100.0 3E-30 1E-34 287.4 32.5 250 295-595 185-454 (520)
16 2z63_A TOLL-like receptor 4, v 100.0 6.4E-31 2.2E-35 296.8 26.6 483 63-646 28-528 (570)
17 4ecn_A Leucine-rich repeat pro 100.0 1.1E-30 3.7E-35 300.6 21.1 356 244-655 443-823 (876)
18 2z7x_B TOLL-like receptor 1, v 100.0 2E-30 6.9E-35 288.9 22.2 219 490-729 248-480 (520)
19 4eco_A Uncharacterized protein 100.0 3.2E-30 1.1E-34 292.6 19.5 314 358-730 249-600 (636)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-28 3.6E-33 277.3 28.8 404 101-595 34-460 (562)
21 4ecn_A Leucine-rich repeat pro 100.0 1E-29 3.4E-34 292.6 18.6 313 358-729 491-839 (876)
22 1jl5_A Outer protein YOPM; leu 100.0 2E-29 6.7E-34 273.2 18.9 421 97-710 10-432 (454)
23 4g8a_A TOLL-like receptor 4; l 100.0 9.5E-28 3.3E-32 274.9 29.6 223 489-729 349-579 (635)
24 1jl5_A Outer protein YOPM; leu 100.0 1.7E-28 5.8E-33 265.8 20.7 198 489-729 215-428 (454)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.8E-27 3E-31 261.6 30.0 427 98-618 52-507 (562)
26 4g8a_A TOLL-like receptor 4; l 100.0 5.6E-27 1.9E-31 268.5 27.6 507 35-646 53-577 (635)
27 3v47_A TOLL-like receptor 5B a 99.9 2E-27 6.7E-32 260.2 19.8 129 490-618 276-405 (455)
28 3v47_A TOLL-like receptor 5B a 99.9 3.5E-26 1.2E-30 250.2 24.2 131 512-646 274-405 (455)
29 1o6v_A Internalin A; bacterial 99.9 1.2E-24 4.1E-29 238.1 29.5 141 98-260 46-188 (466)
30 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-25 5.9E-30 242.5 17.1 159 358-602 233-391 (457)
31 1o6v_A Internalin A; bacterial 99.9 3.5E-24 1.2E-28 234.3 27.7 322 321-704 64-385 (466)
32 4fmz_A Internalin; leucine ric 99.9 2.3E-24 8E-29 226.6 25.2 213 489-729 132-345 (347)
33 3bz5_A Internalin-J, INLJ; leu 99.9 9.3E-25 3.2E-29 236.7 22.5 354 96-656 40-393 (457)
34 2id5_A Lingo-1, leucine rich r 99.9 1.1E-23 3.7E-28 231.7 25.6 295 325-679 32-329 (477)
35 2id5_A Lingo-1, leucine rich r 99.9 1.6E-23 5.4E-28 230.4 25.2 316 328-707 14-333 (477)
36 3o6n_A APL1; leucine-rich repe 99.9 1.6E-23 5.5E-28 223.8 23.8 308 323-729 43-351 (390)
37 4fmz_A Internalin; leucine ric 99.9 2.8E-23 9.4E-28 218.4 23.7 304 321-705 40-344 (347)
38 3oja_B Anopheles plasmodium-re 99.9 6.3E-23 2.2E-27 231.4 23.2 307 324-729 50-357 (597)
39 3o6n_A APL1; leucine-rich repe 99.9 1.6E-22 5.4E-27 216.0 24.7 124 489-618 226-349 (390)
40 3oja_B Anopheles plasmodium-re 99.9 3.3E-22 1.1E-26 225.5 25.0 238 321-619 119-356 (597)
41 1xku_A Decorin; proteoglycan, 99.9 1E-20 3.6E-25 196.9 26.8 150 489-646 121-273 (330)
42 2ft3_A Biglycan; proteoglycan, 99.9 5.5E-21 1.9E-25 199.2 23.6 149 489-646 123-274 (332)
43 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-22 4.6E-27 208.9 11.2 178 358-596 50-232 (313)
44 3ogk_B Coronatine-insensitive 99.9 3.7E-23 1.3E-27 234.4 6.7 225 489-726 293-547 (592)
45 1ogq_A PGIP-2, polygalacturona 99.9 3.3E-22 1.1E-26 206.0 13.0 251 453-730 50-304 (313)
46 4fcg_A Uncharacterized protein 99.9 2.6E-21 8.9E-26 200.5 16.1 218 491-726 83-310 (328)
47 4fcg_A Uncharacterized protein 99.9 7.9E-21 2.7E-25 196.8 18.3 229 452-711 80-317 (328)
48 1xku_A Decorin; proteoglycan, 99.9 4.3E-20 1.5E-24 192.3 23.2 219 358-618 52-273 (330)
49 2ft3_A Biglycan; proteoglycan, 99.8 3.9E-20 1.3E-24 192.7 21.0 238 326-618 34-274 (332)
50 3ogk_B Coronatine-insensitive 99.8 1E-22 3.5E-27 230.7 0.7 156 96-258 71-252 (592)
51 1z7x_W Ribonuclease inhibitor; 99.8 9.2E-23 3.1E-27 223.5 -2.1 347 319-705 22-409 (461)
52 1z7x_W Ribonuclease inhibitor; 99.8 1.8E-22 6.1E-27 221.2 -3.2 108 489-596 284-409 (461)
53 3g06_A SSPH2 (leucine-rich rep 99.8 3.6E-18 1.2E-22 190.3 27.3 258 358-707 40-297 (622)
54 3o53_A Protein LRIM1, AGAP0063 99.8 3E-20 1E-24 191.9 9.3 176 537-730 120-299 (317)
55 3zyi_A Leucine-rich repeat-con 99.8 6.1E-19 2.1E-23 191.9 19.5 222 488-728 74-301 (452)
56 3zyj_A Leucine-rich repeat-con 99.8 8.3E-19 2.8E-23 190.2 19.9 221 489-728 64-290 (440)
57 2p1m_B Transport inhibitor res 99.8 3.3E-22 1.1E-26 226.7 -7.3 35 358-392 211-245 (594)
58 2p1m_B Transport inhibitor res 99.8 1.7E-21 6E-26 220.7 -2.6 158 96-260 64-246 (594)
59 2z66_A Variable lymphocyte rec 99.8 1.1E-18 3.6E-23 179.7 16.7 226 488-729 27-260 (306)
60 2z80_A TOLL-like receptor 2, v 99.8 9.1E-19 3.1E-23 184.0 16.4 86 509-595 145-232 (353)
61 3zyj_A Leucine-rich repeat-con 99.8 7.3E-18 2.5E-22 182.7 23.5 225 453-705 64-290 (440)
62 2z80_A TOLL-like receptor 2, v 99.8 1.1E-18 3.6E-23 183.5 16.2 226 489-729 76-313 (353)
63 1ozn_A Reticulon 4 receptor; N 99.8 8.5E-19 2.9E-23 178.3 13.7 201 358-618 32-235 (285)
64 2z66_A Variable lymphocyte rec 99.8 2.3E-18 7.8E-23 177.2 16.4 135 508-646 121-258 (306)
65 3g06_A SSPH2 (leucine-rich rep 99.8 3.3E-17 1.1E-21 182.6 26.3 113 98-239 40-152 (622)
66 1ozn_A Reticulon 4 receptor; N 99.8 2.5E-18 8.5E-23 174.9 15.7 204 488-707 31-238 (285)
67 3zyi_A Leucine-rich repeat-con 99.8 4.5E-18 1.5E-22 185.1 18.0 200 358-595 99-300 (452)
68 3oja_A Leucine-rich immune mol 99.8 7E-18 2.4E-22 184.4 16.5 244 350-644 26-270 (487)
69 1wwl_A Monocyte differentiatio 99.7 1.9E-18 6.6E-23 177.9 8.6 201 511-728 93-307 (312)
70 3o53_A Protein LRIM1, AGAP0063 99.7 9.3E-18 3.2E-22 173.2 13.2 242 451-732 32-277 (317)
71 3oja_A Leucine-rich immune mol 99.7 1.2E-17 4.1E-22 182.6 13.3 189 489-705 58-248 (487)
72 2xwt_C Thyrotropin receptor; s 99.7 5.6E-17 1.9E-21 160.0 14.9 201 489-730 31-239 (239)
73 1wwl_A Monocyte differentiatio 99.7 7.3E-18 2.5E-22 173.6 8.6 227 321-595 39-284 (312)
74 1p9a_G Platelet glycoprotein I 99.7 3E-16 1E-20 159.1 20.2 199 449-680 6-205 (290)
75 2z62_A TOLL-like receptor 4, v 99.7 8E-17 2.7E-21 162.8 15.2 204 487-706 26-236 (276)
76 2xwt_C Thyrotropin receptor; s 99.7 1.6E-16 5.6E-21 156.7 15.1 151 452-617 30-188 (239)
77 4glp_A Monocyte differentiatio 99.7 1.1E-16 3.7E-21 164.7 13.6 225 490-729 65-306 (310)
78 1p9a_G Platelet glycoprotein I 99.7 7.7E-16 2.6E-20 156.1 18.2 197 489-706 10-207 (290)
79 2z62_A TOLL-like receptor 4, v 99.7 6.7E-16 2.3E-20 156.0 17.4 202 358-597 28-236 (276)
80 3rfs_A Internalin B, repeat mo 99.7 1.8E-16 6E-21 159.7 12.5 139 489-637 109-247 (272)
81 2o6q_A Variable lymphocyte rec 99.7 2.2E-15 7.7E-20 151.4 20.2 177 489-705 37-216 (270)
82 4ay9_X Follicle-stimulating ho 99.7 6.9E-16 2.3E-20 161.5 17.1 223 488-727 29-256 (350)
83 2o6q_A Variable lymphocyte rec 99.7 2.9E-15 9.9E-20 150.6 20.2 196 490-728 17-216 (270)
84 4glp_A Monocyte differentiatio 99.7 1.9E-16 6.4E-21 162.9 11.2 55 636-705 251-305 (310)
85 4ay9_X Follicle-stimulating ho 99.6 6.7E-15 2.3E-19 154.0 20.7 223 357-618 29-256 (350)
86 2ast_B S-phase kinase-associat 99.6 7.1E-17 2.4E-21 168.5 3.3 107 489-595 142-257 (336)
87 1h6u_A Internalin H; cell adhe 99.6 3.3E-15 1.1E-19 153.1 14.7 194 489-712 41-234 (308)
88 3rfs_A Internalin B, repeat mo 99.6 2.3E-15 8E-20 151.4 11.5 209 321-586 37-247 (272)
89 1h6u_A Internalin H; cell adhe 99.6 5.4E-15 1.9E-19 151.5 14.5 199 448-688 36-234 (308)
90 2ast_B S-phase kinase-associat 99.6 1.3E-16 4.6E-21 166.4 2.2 131 453-596 70-206 (336)
91 2ca6_A RAN GTPase-activating p 99.5 4.8E-16 1.7E-20 165.4 0.3 262 450-728 29-341 (386)
92 3m19_A Variable lymphocyte rec 99.5 1.2E-13 4.2E-18 137.0 17.5 155 537-706 35-191 (251)
93 3m19_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 137.6 16.2 155 488-646 34-189 (251)
94 2ca6_A RAN GTPase-activating p 99.5 8.7E-16 3E-20 163.4 0.2 230 489-729 32-315 (386)
95 4ezg_A Putative uncharacterize 99.5 1.1E-13 3.6E-18 131.8 11.8 148 489-646 44-191 (197)
96 3goz_A Leucine-rich repeat-con 99.5 7.4E-16 2.5E-20 162.2 -3.6 107 489-595 109-235 (362)
97 3goz_A Leucine-rich repeat-con 99.5 4.1E-15 1.4E-19 156.4 1.5 231 487-729 20-296 (362)
98 3cvr_A Invasion plasmid antige 99.5 2.7E-13 9.2E-18 149.1 15.8 163 513-706 80-242 (571)
99 4ezg_A Putative uncharacterize 99.5 1.9E-13 6.6E-18 130.0 10.8 154 447-618 38-191 (197)
100 3cvr_A Invasion plasmid antige 99.5 8.3E-13 2.8E-17 145.2 16.8 178 513-731 59-244 (571)
101 1h6t_A Internalin B; cell adhe 99.4 2.7E-13 9.4E-18 137.4 11.9 175 510-712 43-217 (291)
102 1h6t_A Internalin B; cell adhe 99.4 5.1E-13 1.7E-17 135.4 12.5 171 489-687 46-216 (291)
103 3e6j_A Variable lymphocyte rec 99.4 5.1E-12 1.7E-16 123.1 15.8 61 632-704 108-169 (229)
104 2o6s_A Variable lymphocyte rec 99.4 5.2E-12 1.8E-16 121.3 14.8 156 489-657 28-185 (208)
105 2o6s_A Variable lymphocyte rec 99.4 1.8E-12 6.2E-17 124.5 11.2 162 512-695 27-190 (208)
106 1m9s_A Internalin B; cell inva 99.4 1.6E-12 5.4E-17 144.8 12.3 175 510-712 40-214 (605)
107 1m9s_A Internalin B; cell inva 99.4 2.2E-12 7.4E-17 143.7 12.4 171 489-687 43-213 (605)
108 2v70_A SLIT-2, SLIT homolog 2 99.3 1.3E-11 4.4E-16 119.4 14.5 107 490-596 58-164 (220)
109 1xeu_A Internalin C; cellular 99.3 1.2E-12 3.9E-17 130.6 6.8 119 490-618 20-138 (263)
110 3e6j_A Variable lymphocyte rec 99.3 2.1E-11 7.1E-16 118.8 15.4 58 669-728 111-170 (229)
111 2v9t_B SLIT homolog 2 protein 99.3 1.1E-11 3.8E-16 119.8 13.0 130 488-618 31-162 (220)
112 2xot_A Amphoterin-induced prot 99.3 1.7E-11 5.9E-16 128.5 14.3 102 492-596 21-123 (361)
113 2ell_A Acidic leucine-rich nuc 99.3 1.2E-11 4.1E-16 114.2 9.8 140 511-655 22-164 (168)
114 1dce_A Protein (RAB geranylger 99.3 4.4E-15 1.5E-19 164.4 -16.1 100 491-595 443-543 (567)
115 2v70_A SLIT-2, SLIT homolog 2 99.3 2.8E-11 9.6E-16 117.0 12.6 130 489-618 32-163 (220)
116 2v9t_B SLIT homolog 2 protein 99.3 5.7E-11 2E-15 114.8 14.8 132 453-597 32-164 (220)
117 2xot_A Amphoterin-induced prot 99.2 1.2E-11 4E-16 129.8 10.0 153 488-646 38-199 (361)
118 1xeu_A Internalin C; cellular 99.2 5.2E-11 1.8E-15 118.6 12.6 142 489-646 41-182 (263)
119 1dce_A Protein (RAB geranylger 99.2 7E-14 2.4E-18 154.8 -9.2 197 489-723 349-566 (567)
120 2ell_A Acidic leucine-rich nuc 99.2 1.2E-11 4E-16 114.3 6.1 128 489-618 24-157 (168)
121 2je0_A Acidic leucine-rich nuc 99.2 5.7E-12 2E-16 113.7 3.0 105 489-595 17-123 (149)
122 2je0_A Acidic leucine-rich nuc 99.1 2.3E-11 7.8E-16 109.7 4.7 106 511-618 15-123 (149)
123 3sb4_A Hypothetical leucine ri 99.1 3E-10 1E-14 117.4 13.3 78 635-726 225-306 (329)
124 1w8a_A SLIT protein; signaling 99.1 2.8E-10 9.6E-15 107.3 11.5 109 489-597 29-138 (192)
125 3sb4_A Hypothetical leucine ri 99.1 5.4E-10 1.8E-14 115.5 14.1 35 381-417 100-136 (329)
126 4b8c_D Glucose-repressible alc 99.1 2.9E-11 1E-15 138.2 3.1 180 446-646 217-401 (727)
127 2wfh_A SLIT homolog 2 protein 99.0 1.2E-09 4.3E-14 102.8 12.4 106 489-595 31-136 (193)
128 1w8a_A SLIT protein; signaling 99.0 1.1E-09 3.8E-14 103.2 11.5 123 492-618 11-136 (192)
129 4fdw_A Leucine rich hypothetic 99.0 2.7E-08 9.4E-13 104.9 21.5 249 454-746 136-395 (401)
130 1a9n_A U2A', U2A'; complex (nu 99.0 5.1E-10 1.8E-14 103.9 6.9 82 510-595 16-98 (176)
131 4fdw_A Leucine rich hypothetic 99.0 4.3E-08 1.5E-12 103.4 22.1 222 316-596 127-356 (401)
132 1a9n_A U2A', U2A'; complex (nu 99.0 7.2E-10 2.5E-14 102.9 7.5 60 533-595 15-74 (176)
133 2wfh_A SLIT homolog 2 protein 99.0 3.8E-09 1.3E-13 99.4 12.4 123 492-618 13-136 (193)
134 2o6r_A Variable lymphocyte rec 99.0 3.1E-09 1.1E-13 98.8 11.2 107 489-596 28-135 (177)
135 4b8c_D Glucose-repressible alc 99.0 3.3E-10 1.1E-14 129.5 5.5 125 489-617 173-302 (727)
136 2o6r_A Variable lymphocyte rec 98.9 1.4E-08 4.9E-13 94.2 12.6 83 513-596 28-111 (177)
137 1ds9_A Outer arm dynein; leuci 98.8 4.3E-11 1.5E-15 113.7 -7.0 108 532-646 43-150 (198)
138 1ds9_A Outer arm dynein; leuci 98.8 3.9E-11 1.3E-15 114.0 -8.1 147 491-642 25-180 (198)
139 4fs7_A Uncharacterized protein 98.7 4.1E-07 1.4E-11 96.3 20.2 80 632-726 293-375 (394)
140 3g39_A Variable lymphocyte rec 98.7 3.5E-08 1.2E-12 90.7 9.9 83 513-596 30-113 (170)
141 4fs7_A Uncharacterized protein 98.7 4.7E-07 1.6E-11 95.9 19.3 78 507-590 314-393 (394)
142 2r9u_A Variable lymphocyte rec 98.7 4.9E-08 1.7E-12 90.0 9.9 83 513-596 33-116 (174)
143 2r9u_A Variable lymphocyte rec 98.7 1.1E-07 3.9E-12 87.5 11.2 78 516-596 15-92 (174)
144 3g39_A Variable lymphocyte rec 98.7 1.2E-07 4E-12 87.1 10.9 79 515-596 11-89 (170)
145 2ifg_A High affinity nerve gro 98.4 6.8E-07 2.3E-11 92.9 9.5 84 489-573 31-115 (347)
146 3un9_A NLR family member X1; l 98.4 1.3E-08 4.3E-13 106.4 -4.1 14 633-646 236-249 (372)
147 2ra8_A Uncharacterized protein 98.3 6.5E-07 2.2E-11 92.5 7.8 188 509-728 135-341 (362)
148 4gt6_A Cell surface protein; l 98.3 3.8E-05 1.3E-09 81.1 21.7 83 632-729 284-369 (394)
149 3un9_A NLR family member X1; l 98.3 2.4E-08 8.4E-13 104.2 -3.1 87 489-575 155-253 (372)
150 2ifg_A High affinity nerve gro 98.3 1.6E-06 5.5E-11 90.1 9.9 102 493-597 12-115 (347)
151 4gt6_A Cell surface protein; l 98.2 4.4E-05 1.5E-09 80.6 19.6 240 448-725 82-342 (394)
152 2ra8_A Uncharacterized protein 98.2 1.9E-06 6.6E-11 89.0 8.2 37 378-416 168-204 (362)
153 4h09_A Hypothetical leucine ri 98.2 0.00065 2.2E-08 71.2 27.4 136 556-713 212-350 (379)
154 3e4g_A ATP synthase subunit S, 98.2 8.6E-07 2.9E-11 80.0 3.4 92 123-220 61-153 (176)
155 4h09_A Hypothetical leucine ri 97.9 0.0011 3.6E-08 69.5 22.0 125 581-726 213-342 (379)
156 3e4g_A ATP synthase subunit S, 97.8 9.8E-06 3.4E-10 73.1 3.6 81 562-645 62-148 (176)
157 1io0_A Tropomodulin; LRR prote 97.4 5E-05 1.7E-09 70.4 2.7 60 489-548 36-104 (185)
158 1io0_A Tropomodulin; LRR prote 97.3 4.4E-05 1.5E-09 70.8 0.8 117 450-573 33-163 (185)
159 3rw6_A Nuclear RNA export fact 97.3 8.4E-05 2.9E-09 72.5 2.2 81 509-591 166-257 (267)
160 3rw6_A Nuclear RNA export fact 96.7 0.00062 2.1E-08 66.4 2.9 78 489-568 170-258 (267)
161 3rfe_A Platelet glycoprotein I 93.7 0.094 3.2E-06 44.7 5.6 53 640-706 12-67 (130)
162 3rfe_A Platelet glycoprotein I 91.8 0.25 8.5E-06 42.0 5.8 35 562-596 32-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 91.8 0.096 3.3E-06 48.0 3.3 59 489-547 41-108 (197)
164 1pgv_A TMD-1, tropomodulin TMD 86.0 0.3 1E-05 44.6 2.1 89 452-547 40-136 (197)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.9e-50 Score=464.42 Aligned_cols=630 Identities=17% Similarity=0.098 Sum_probs=450.8
Q ss_pred CCCCCCCccCCcCCceEeCcCC-CCChhcccccccCCceeEecCCCCcCChhhhhhh--ccCCCCCCCceEEEecCCCCC
Q 042439 2 PVGIGRLTCLQTLCNFVVGKGS-GSGLRELKLLTHLHGTLNISKLENVKCVGDAKEA--QLDGKKNLRELLLRWALNTDG 78 (766)
Q Consensus 2 P~~i~~l~~L~~L~~~~~~~~~-~~~~~~l~~L~~L~g~L~l~~l~~~~~~~~~~~~--~l~~l~~L~~L~L~~~~~~~~ 78 (766)
|..+++|+.|+.+. ..... ...+..++.+++|+ .|++.+.. .....+. .++.+++|++|+|++|....
T Consensus 70 ~~~l~~L~~L~~l~---~~~~~~~~l~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~- 140 (768)
T 3rgz_A 70 SSSLLSLTGLESLF---LSNSHINGSVSGFKCSASLT-SLDLSRNS----LSGPVTTLTSLGSCSGLKFLNVSSNTLDF- 140 (768)
T ss_dssp HHHTTTCTTCCEEE---CTTSCEEECCCCCCCCTTCC-EEECCSSE----EEEEGGGGGGGGGCTTCCEEECCSSEEEC-
T ss_pred ChhHhccCcccccC---CcCCCcCCCchhhccCCCCC-EEECCCCc----CCCcCCChHHHhCCCCCCEEECcCCccCC-
Confidence 34566776666663 22211 11235688888888 88887632 2333444 78899999999998764311
Q ss_pred CCccchhhHHHHhhc-CCCCCCcceEEEEecCCCCCCc-c---ccCCCCCCeeEEEEecCCCCCCCCCCCCcCcccceee
Q 042439 79 SSSREAKTENDVLDM-LKPHEILEQFCISGYGGTKFPA-W---LGDSSLPNLVTLKFENCDMCTALPSVGQLPSLKHLAV 153 (766)
Q Consensus 79 ~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~lp~-~---~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L 153 (766)
..+.. +..+++|++|++++|.+...+. + + ..+++|++|++++|.+.+..+ ++.+++|++|++
T Consensus 141 ----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~L 207 (768)
T 3rgz_A 141 ----------PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS--DGCGELKHLAISGNKISGDVD-VSRCVNLEFLDV 207 (768)
T ss_dssp ----------CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT--TCCTTCCEEECCSSEEESCCB-CTTCTTCCEEEC
T ss_pred ----------cCCHHHhccCCCCCEEECCCCccCCcCChhhhhh--ccCCCCCEEECCCCcccccCC-cccCCcCCEEEC
Confidence 12222 3677899999999888765433 2 3 468999999999998655444 488999999999
Q ss_pred cCCCCceecCcccccCCCCCCCCCccEEeccCccchhhhhccCCCccccccCcccceecccccccccCCCCC-CCCCccE
Q 042439 154 CGMSRVKRLGSEFYGNDPPIPFPCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKGPFPE-HLPALEM 232 (766)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~-~l~~L~~ 232 (766)
++|.....++. + + .+++|++|++++|..... .+..+..+++|++|++++|. +++.+|. .+++|++
T Consensus 208 s~n~l~~~~~~-l-~-----~l~~L~~L~Ls~n~l~~~------~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~ 273 (768)
T 3rgz_A 208 SSNNFSTGIPF-L-G-----DCSALQHLDISGNKLSGD------FSRAISTCTELKLLNISSNQ-FVGPIPPLPLKSLQY 273 (768)
T ss_dssp CSSCCCSCCCB-C-T-----TCCSCCEEECCSSCCCSC------HHHHTTTCSSCCEEECCSSC-CEESCCCCCCTTCCE
T ss_pred cCCcCCCCCcc-c-c-----cCCCCCEEECcCCcCCCc------ccHHHhcCCCCCEEECCCCc-ccCccCccccCCCCE
Confidence 98764433332 2 2 289999999999875322 45667889999999998885 5545553 6789999
Q ss_pred EEEecCCC---cccccCC-CCccceEEEcCCCCceeeccccccCCCCceeeccCCccccccCCCCCCCCCccEEEecccC
Q 042439 233 LVIEGCEE---LSVSVSS-LPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLKPQLPKLEELEINDMK 308 (766)
Q Consensus 233 L~l~~~~~---l~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~ 308 (766)
|++++|.. +...+.. +++|++|++++|. +.+.+|..+.++..|+.++++
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~---------------------------l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNH---------------------------FYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSE---------------------------EEECCCGGGGGCTTCCEEECC
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCc---------------------------CCCccchHHhcCCCccEEECC
Confidence 99998863 2233333 4899999999986 334455556666666666666
Q ss_pred CccchhcccCccccCCCCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCC--CCCccE
Q 042439 309 EHTYIWKSHNGLLQDSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLS--LSSLRE 386 (766)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~--l~~L~~ 386 (766)
++...+.++...+..+++|++|++++|.-...++... . ...++|++|++++|.+.+.+|..+.. +++|++
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~---~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL-----T---NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH-----H---HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH-----H---hhhcCCcEEEccCCCcCCCcChhhhhcccCCccE
Confidence 6665444565668889999999999875333444321 1 11238999999999888878877766 788999
Q ss_pred EEecCCCCCcccCC-CCCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCC
Q 042439 387 IEIYGCWSLVSFPE-VALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRS 465 (766)
Q Consensus 387 L~L~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 465 (766)
|++++|...+.+|. ...+++|++|++++|...+.+|.. +..+++|+.|++++|.-
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~------------------------l~~l~~L~~L~L~~n~l 454 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS------------------------LGSLSKLRDLKLWLNML 454 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG------------------------GGGCTTCCEEECCSSCC
T ss_pred EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH------------------------HhcCCCCCEEECCCCcc
Confidence 99999976666663 455889999999988755555544 34577899999998752
Q ss_pred ccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEec
Q 042439 466 LTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIG 545 (766)
Q Consensus 466 l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~ 545 (766)
. +.+|..+..+ ++|++|++++|...+.+|..+..+++|++|++++|...+.+|.++..+++|++|+++
T Consensus 455 ~------~~~p~~~~~l------~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 455 E------GEIPQELMYV------KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522 (768)
T ss_dssp C------SCCCGGGGGC------TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred c------CcCCHHHcCC------CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence 2 2334433333 789999999999888889999999999999999998888899999999999999999
Q ss_pred CCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCC------------------------------
Q 042439 546 RCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRG------------------------------ 595 (766)
Q Consensus 546 ~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~------------------------------ 595 (766)
+|...+.+|..+..+++|+.|++++|++.+.+|..+.....+..+.+..+
T Consensus 523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 99888889988889999999999999999999887766655544433221
Q ss_pred ----------------CCCC-CCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcc
Q 042439 596 ----------------VELP-SLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKAD 658 (766)
Q Consensus 596 ----------------~~l~-~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 658 (766)
.... ..+..+.+++|++||+++| ...+.+|..++.+++|+.|++++|. -...+|..+
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N----~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~ip~~l- 676 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN----MLSGYIPKEIGSMPYLFILNLGHND-ISGSIPDEV- 676 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS----CCBSCCCGGGGGCTTCCEEECCSSC-CCSCCCGGG-
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCC----cccccCCHHHhccccCCEEeCcCCc-cCCCCChHH-
Confidence 0000 1123455789999999997 3445667779999999999999963 345788877
Q ss_pred cccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCCCCcccccceeeecCChhHH----HHh
Q 042439 659 DIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPEKGLPSSLLQLYIGGCPLIA----EKC 734 (766)
Q Consensus 659 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~~~~l~----~~~ 734 (766)
..+++|+.|+++++.--..+|..+..+++|++|++++|+..+.+|..+.+.++....+.|||.+= ..|
T Consensus 677 --------~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C 748 (768)
T 3rgz_A 677 --------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748 (768)
T ss_dssp --------GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCC
T ss_pred --------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCC
Confidence 36789999999995444489999999999999999999888899998778888888888887531 268
Q ss_pred hccCCcccccccCcceEE
Q 042439 735 RKDGGQYWDLLTHIPYVV 752 (766)
Q Consensus 735 ~~~~~~~~~~i~~i~~v~ 752 (766)
....+++|++++|++.+.
T Consensus 749 ~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 749 DPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CSCC--------------
T ss_pred CCCccCCCCCCCCccccC
Confidence 888899999999998764
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.3e-47 Score=439.48 Aligned_cols=583 Identities=18% Similarity=0.100 Sum_probs=410.7
Q ss_pred hhhccCCCCCCCceEEEecCCCCCCCccchhhHHHHhhcCCCCCCcceEEEEecCCC-CCCc--cccCCCCCCeeEEEEe
Q 042439 55 KEAQLDGKKNLRELLLRWALNTDGSSSREAKTENDVLDMLKPHEILEQFCISGYGGT-KFPA--WLGDSSLPNLVTLKFE 131 (766)
Q Consensus 55 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~lp~--~~~~~~l~~L~~L~L~ 131 (766)
.+..+.++++|+.++++.+.. ...+..+..+++|++|+++++.+. .+|. .+ ..+++|++|+|+
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~------------~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l--~~l~~L~~L~Ls 134 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHI------------NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSL--GSCSGLKFLNVS 134 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCE------------EECCCCCCCCTTCCEEECCSSEEEEEGGGGGGG--GGCTTCCEEECC
T ss_pred cChhHhccCcccccCCcCCCc------------CCCchhhccCCCCCEEECCCCcCCCcCCChHHH--hCCCCCCEEECc
Confidence 556777777777776653321 113467888889999999988754 3555 56 468999999999
Q ss_pred cCCCCCCCCC--CCCcCcccceeecCCCCceecCccc--ccCCCCCCCCCccEEeccCccchhhhhccCCCccccccCcc
Q 042439 132 NCDMCTALPS--VGQLPSLKHLAVCGMSRVKRLGSEF--YGNDPPIPFPCLETLIFENMREWEDWISHGSSQRVVEGFPK 207 (766)
Q Consensus 132 ~~~~~~~l~~--l~~l~~L~~L~L~~~~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~ 207 (766)
+|.+.+.+|. +.++++|++|++++|......+..+ .+. +++|++|++++|..... .....+++
T Consensus 135 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~--------~~~~~l~~ 201 (768)
T 3rgz_A 135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG-----CGELKHLAISGNKISGD--------VDVSRCVN 201 (768)
T ss_dssp SSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC-----CTTCCEEECCSSEEESC--------CBCTTCTT
T ss_pred CCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc-----CCCCCEEECCCCccccc--------CCcccCCc
Confidence 9987766664 3789999999999875433332221 222 88999999999875321 12367899
Q ss_pred cceecccccccccCCCC--CCCCCccEEEEecCCCc---ccccCCCCccceEEEcCCCCceeeccccccCCCCceeeccC
Q 042439 208 LRELHILRCSKLKGPFP--EHLPALEMLVIEGCEEL---SVSVSSLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDA 282 (766)
Q Consensus 208 L~~L~l~~c~~l~~~~p--~~l~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 282 (766)
|++|++++|. +++.+| ..+++|++|++++|... ...+..+++|++|++++|....
T Consensus 202 L~~L~Ls~n~-l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~------------------- 261 (768)
T 3rgz_A 202 LEFLDVSSNN-FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG------------------- 261 (768)
T ss_dssp CCEEECCSSC-CCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE-------------------
T ss_pred CCEEECcCCc-CCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccC-------------------
Confidence 9999998885 655555 36789999999998743 3467789999999999987432
Q ss_pred CccccccCCCCC-CCCCccEEEecccCCccchhcccCccccCCCCCCEEEEccCCCccccchhhhHHHHhhhhhccCccc
Q 042439 283 SNQVFLAGPLKP-QLPKLEELEINDMKEHTYIWKSHNGLLQDSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLE 361 (766)
Q Consensus 283 ~~~~~~~~~~~~-~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~ 361 (766)
.+|. .+++|+.|.+. ++.+.+.++......+++|++|++++|.--..++.. +. .+++|+
T Consensus 262 --------~~~~~~l~~L~~L~L~---~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-----~~----~l~~L~ 321 (768)
T 3rgz_A 262 --------PIPPLPLKSLQYLSLA---ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-----FG----SCSLLE 321 (768)
T ss_dssp --------SCCCCCCTTCCEEECC---SSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-----GG----GCTTCC
T ss_pred --------ccCccccCCCCEEECc---CCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-----Hh----cCCCcc
Confidence 2222 34555555554 444433455554455699999999997533333322 12 238999
Q ss_pred EEEeecCCCCcccCcc-cCCCCCccEEEecCCCCCcccCCC-CCCC-CcceEEEccCCCCCcccccccc--CcchhHHHH
Q 042439 362 YLRLSGCQGLVKLPQS-SLSLSSLREIEIYGCWSLVSFPEV-ALPS-KLRKIEICSCDALKSLPEAWMC--DTNSSLEIL 436 (766)
Q Consensus 362 ~L~L~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~-~~l~-~L~~L~l~~~~~l~~~~~~~~~--~~~~~~~~l 436 (766)
+|++++|.+.+.+|.. +..+++|++|++++|...+.+|.. ..++ +|++|++++|.....++..+.. .......++
T Consensus 322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp EEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred EEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence 9999999987788865 889999999999999766566643 2344 9999999999876666665443 223444555
Q ss_pred HHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCC
Q 042439 437 MEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLE 516 (766)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 516 (766)
+.+.+.+..+..+..+++|++|++++|. +. +..|..+..+ ++|++|++++|...+.+|..+..+++|+
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~-----~~~p~~l~~l------~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFNY-LS-----GTIPSSLGSL------SKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSSE-EE-----SCCCGGGGGC------TTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred CCCccccccCHHHhcCCCCCEEECcCCc-cc-----CcccHHHhcC------CCCCEEECCCCcccCcCCHHHcCCCCce
Confidence 6666666667777778888888887763 22 2233333333 6788888888887777777788888888
Q ss_pred EEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCC
Q 042439 517 TIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGV 596 (766)
Q Consensus 517 ~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 596 (766)
.|++++|...+.+|..+..+++|++|++++|...+.+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.
T Consensus 470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 88888887777777778888888888888887666777777778888888888888777888888888888888888876
Q ss_pred CCCCCCCC-CCCCCccee----------------------------------------------Eeccccccchhhhhcc
Q 042439 597 ELPSLEED-GLPTNLHSL----------------------------------------------WIAGNMEIWKSTIEWG 629 (766)
Q Consensus 597 ~l~~~~~~-~~~~~L~~L----------------------------------------------~l~~N~~~l~~~~~~~ 629 (766)
....+|.. .....+..+ ++..| ...+..|
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~----~~~g~~~ 625 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR----VYGGHTS 625 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC----EEEEECC
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc----eecccCc
Confidence 55444422 111111111 11111 1122334
Q ss_pred cccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcCccc
Q 042439 630 RGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKY 709 (766)
Q Consensus 630 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 709 (766)
..+..+++|+.|++++|. -...+|..++ .+++|+.|+++++.--..+|..+..+++|++|++++|+.-+.
T Consensus 626 ~~~~~l~~L~~LdLs~N~-l~g~ip~~l~---------~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNM-LSGYIPKEIG---------SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695 (768)
T ss_dssp CSCSSSBCCCEEECCSSC-CBSCCCGGGG---------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC
T ss_pred hhhhccccccEEECcCCc-ccccCCHHHh---------ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCc
Confidence 557888999999999963 3457787763 678999999999544448999999999999999999877668
Q ss_pred CCC-CCcccccceeeecCChhH
Q 042439 710 FPE-KGLPSSLLQLYIGGCPLI 730 (766)
Q Consensus 710 l~~-~~~~~~L~~L~i~~~~~l 730 (766)
+|. .+.+++|++|++++|+.-
T Consensus 696 ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 696 IPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCGGGGGCCCCSEEECCSSEEE
T ss_pred CChHHhCCCCCCEEECcCCccc
Confidence 887 334789999999999653
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1e-39 Score=376.54 Aligned_cols=560 Identities=13% Similarity=0.064 Sum_probs=364.3
Q ss_pred ccCCceeEecCCCCcCChhhhhhhccCCCCCCCceEEEecCCCCCCCccchhhHHHHhhcCCCCCCcceEEEEecCCCCC
Q 042439 34 THLHGTLNISKLENVKCVGDAKEAQLDGKKNLRELLLRWALNTDGSSSREAKTENDVLDMLKPHEILEQFCISGYGGTKF 113 (766)
Q Consensus 34 ~~L~g~L~l~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l 113 (766)
++++ .|++.+. ......+..+.++++|++|+++++.... . .+..+..+++|++|+++++.+..+
T Consensus 25 ~~l~-~L~Ls~n----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~---~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 25 TNIT-VLNLTHN----QLRRLPAANFTRYSQLTSLDVGFNTISK--------L---EPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp TTCS-EEECCSS----CCCCCCGGGGGGGTTCSEEECCSSCCCC--------C---CTTHHHHCTTCCEEECCSSCCCCC
T ss_pred CCCc-EEECCCC----CCCCcCHHHHhCCCcCcEEECCCCccCc--------c---CHHHHhcccCcCEEECCCCccCcc
Confidence 4566 7777542 2334455567788888888887654311 1 123344556888888888887777
Q ss_pred CccccCCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeecCCCCceecCcccccCCCCCCCCCccEEeccCccchhhh
Q 042439 114 PAWLGDSSLPNLVTLKFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCLETLIFENMREWEDW 192 (766)
Q Consensus 114 p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 192 (766)
|.... ..+++|++|++++|.+.+..| .++++++|++|++++|.. +.+.....+ .+++|++|++++|.....
T Consensus 89 ~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~-----~l~~L~~L~L~~n~l~~~- 160 (680)
T 1ziw_A 89 SDKTF-AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL-SSTKLGTQV-----QLENLQELLLSNNKIQAL- 160 (680)
T ss_dssp CTTTT-TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC-SCCCCCSSS-----CCTTCCEEECCSSCCCCB-
T ss_pred Chhhh-ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcc-cccCchhhc-----ccccCCEEEccCCccccc-
Confidence 76422 467888888888887654443 378888888888887643 222222122 277888888888754211
Q ss_pred hccCCCcccc--ccCcccceecccccccccCCCCC---CCCCccEEEEecCCCcccccC------CCCccceEEEcCCCC
Q 042439 193 ISHGSSQRVV--EGFPKLRELHILRCSKLKGPFPE---HLPALEMLVIEGCEELSVSVS------SLPALCKLQIGGCKK 261 (766)
Q Consensus 193 ~~~~~~~~~~--~~l~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~~~~~------~~~~L~~L~l~~~~~ 261 (766)
.+..+ ..+++|++|++++|. +++..|. .+++|+.+++.++........ ..++|+.|++++|..
T Consensus 161 -----~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l 234 (680)
T 1ziw_A 161 -----KSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234 (680)
T ss_dssp -----CHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred -----CHHHhhccccccccEEECCCCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc
Confidence 11111 235778888887773 5533343 244555555554432111000 124555555555542
Q ss_pred ceeeccccccCCCCceeeccCCccccccCCCCCCCCCccEEEecccCCccchhcccCccccCC--CCCCEEEEccCCCcc
Q 042439 262 VVWESATGHLGSQNSVVCRDASNQVFLAGPLKPQLPKLEELEINDMKEHTYIWKSHNGLLQDS--CSLKRLTIASCPKLQ 339 (766)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~ 339 (766)
.. ..+..+..+ ++|++|+++++. ++
T Consensus 235 ~~----------------------------------------------------~~~~~~~~l~~~~L~~L~Ls~n~-l~ 261 (680)
T 1ziw_A 235 ST----------------------------------------------------TSNTTFLGLKWTNLTMLDLSYNN-LN 261 (680)
T ss_dssp CE----------------------------------------------------ECTTTTGGGGGSCCCEEECTTSC-CC
T ss_pred cc----------------------------------------------------cChhHhhccCcCCCCEEECCCCC-cC
Confidence 21 112233333 347777777753 44
Q ss_pred ccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCc-----ccC-----CCCCCCCcce
Q 042439 340 SLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLV-----SFP-----EVALPSKLRK 409 (766)
Q Consensus 340 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~-----~~~-----~~~~l~~L~~ 409 (766)
.++...+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.... .+| ....+++|++
T Consensus 262 ~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~ 333 (680)
T 1ziw_A 262 VVGNDSF--------AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333 (680)
T ss_dssp EECTTTT--------TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred ccCcccc--------cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence 4332211 123788888888888777777778888888888888764322 222 2345788888
Q ss_pred EEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCC-CccccccCCCCccccccccccCCC
Q 042439 410 IEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCR-SLTCIFSKNELPATLESLEVGNLP 488 (766)
Q Consensus 410 L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~~~~~~~~~~~l~~l~~~~~~ 488 (766)
|++++|......+. .+..+++|++|++++|. .+..+ +...+... ..
T Consensus 334 L~l~~n~l~~~~~~------------------------~~~~l~~L~~L~Ls~n~~~~~~l-~~~~f~~~--------~~ 380 (680)
T 1ziw_A 334 LNMEDNDIPGIKSN------------------------MFTGLINLKYLSLSNSFTSLRTL-TNETFVSL--------AH 380 (680)
T ss_dssp EECCSCCBCCCCTT------------------------TTTTCTTCCEEECTTCBSCCCEE-CTTTTGGG--------TT
T ss_pred EECCCCccCCCChh------------------------HhccccCCcEEECCCCchhhhhc-chhhhccc--------cc
Confidence 88888764332222 23457788888888764 12222 22222211 11
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCccc-ccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEE
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLP-SGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLR 567 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 567 (766)
++|+.|++++|......|..+..+++|+.|++++|...+.+| ..+..+++|++|++++|......+..+..+++|+.|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 579999999998888778888899999999999987666665 5678899999999999965555556777789999999
Q ss_pred eccCcCc--cccCccCCCCCCCCeeEecCCCCCCCCCC-CCCCCCcceeEeccccccchhhhhc----ccccCCCCCCcE
Q 042439 568 IHGCERL--EALPKGLHNLTSLQELTIGRGVELPSLEE-DGLPTNLHSLWIAGNMEIWKSTIEW----GRGFHRFSSLRQ 640 (766)
Q Consensus 568 l~~~~~~--~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~N~~~l~~~~~~----~~~~~~l~~L~~ 640 (766)
+++|... +.+|..+..+++|++|++++|......+. ...+++|++|++++|.......... ...+..+++|++
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 9998764 56788888999999999999864443333 4678899999999862211111111 123788899999
Q ss_pred EEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcCcccCCCCC---cc
Q 042439 641 LRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPKLKYFPEKG---LP 716 (766)
Q Consensus 641 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~---~~ 716 (766)
|++++| .+..+|... +..+++|+.|++++ ++++.+|. .+..+++|++|++++| .++.++... .+
T Consensus 541 L~L~~N--~l~~i~~~~--------~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~ 608 (680)
T 1ziw_A 541 LNLESN--GFDEIPVEV--------FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAF 608 (680)
T ss_dssp EECCSS--CCCCCCTTT--------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHH
T ss_pred EECCCC--CCCCCCHHH--------cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccc
Confidence 999987 456777643 35678999999988 68888887 4678899999999996 677777632 35
Q ss_pred cccceeeecCChh
Q 042439 717 SSLLQLYIGGCPL 729 (766)
Q Consensus 717 ~~L~~L~i~~~~~ 729 (766)
++|++|++++||-
T Consensus 609 ~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 609 RNLTELDMRFNPF 621 (680)
T ss_dssp TTCSEEECTTCCC
T ss_pred cccCEEEccCCCc
Confidence 8899999999874
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.1e-38 Score=363.05 Aligned_cols=577 Identities=14% Similarity=0.038 Sum_probs=351.4
Q ss_pred CcceEEEEecCCCCCCccccCCCCCCeeEEEEecCCCCCCCCC-CCCcCcccceeecCCCCceecCcccccCCCCCCCCC
Q 042439 99 ILEQFCISGYGGTKFPAWLGDSSLPNLVTLKFENCDMCTALPS-VGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPC 177 (766)
Q Consensus 99 ~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 177 (766)
++++|+++++.+..+|.... ..+++|++|++++|.+.+..|. ++++++|++|++++| .++.++...++. +++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~-----l~~ 98 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANF-TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAF-----CTN 98 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGG-GGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTT-----CTT
T ss_pred CCcEEECCCCCCCCcCHHHH-hCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhcc-----CCC
Confidence 45555555544444433211 2344555555555544333332 444555555555443 233333221111 445
Q ss_pred ccEEeccCccchhhhhccCCCccccccCcccceecccccccccCCCCC---CCCCccEEEEecCCCcc---cc--cCCCC
Q 042439 178 LETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKGPFPE---HLPALEMLVIEGCEELS---VS--VSSLP 249 (766)
Q Consensus 178 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~---~l~~L~~L~l~~~~~l~---~~--~~~~~ 249 (766)
|++|++++|..... .+..+..+++|++|++++|. +++..|. .+++|++|++++|..-. .. ...++
T Consensus 99 L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 99 LTELHLMSNSIQKI------KNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171 (680)
T ss_dssp CSEEECCSSCCCCC------CSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC
T ss_pred CCEEECCCCccCcc------ChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhccccc
Confidence 55555555432110 12234445555555555543 3322222 34455555555543211 11 12346
Q ss_pred ccceEEEcCCCCceeeccccccCCCCceeeccCCccccccCCCCCCCCCccEEEecccCCccchhcccCc--cccCCCCC
Q 042439 250 ALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLKPQLPKLEELEINDMKEHTYIWKSHNG--LLQDSCSL 327 (766)
Q Consensus 250 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~--~~~~~~~L 327 (766)
+|++|++++|.... ..|..+..+..|+..++.++......... .....++|
T Consensus 172 ~L~~L~L~~n~l~~---------------------------~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L 224 (680)
T 1ziw_A 172 SLKKLELSSNQIKE---------------------------FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224 (680)
T ss_dssp EESEEECTTCCCCC---------------------------BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCC
T ss_pred cccEEECCCCcccc---------------------------cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccc
Confidence 77777777765222 22333333333333333333321100000 01134789
Q ss_pred CEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccC-CCCCCCC
Q 042439 328 KRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFP-EVALPSK 406 (766)
Q Consensus 328 ~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~ 406 (766)
++|+++++. ++......+. .+ ..++|++|++++|.+.+..+..+..+++|++|++++|...+..+ ....+++
T Consensus 225 ~~L~L~~n~-l~~~~~~~~~----~l--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (680)
T 1ziw_A 225 RNLSLSNSQ-LSTTSNTTFL----GL--KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297 (680)
T ss_dssp CEEECTTSC-CCEECTTTTG----GG--GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTT
T ss_pred cEEEccCCc-ccccChhHhh----cc--CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCC
Confidence 999999864 4443332211 11 01459999999999877777788999999999999996655544 3556899
Q ss_pred cceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccC
Q 042439 407 LRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGN 486 (766)
Q Consensus 407 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~ 486 (766)
|++|++++|.....++. ..+.......+..+++|++|+++++. +..+ +...+..
T Consensus 298 L~~L~L~~~~~~~~~~~---------------~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~--------- 351 (680)
T 1ziw_A 298 VRYLNLKRSFTKQSISL---------------ASLPKIDDFSFQWLKCLEHLNMEDND-IPGI-KSNMFTG--------- 351 (680)
T ss_dssp CCEEECTTCBCCC---------------------CCEECTTTTTTCTTCCEEECCSCC-BCCC-CTTTTTT---------
T ss_pred ccEEeccchhhhccccc---------------ccccccChhhcccCCCCCEEECCCCc-cCCC-ChhHhcc---------
Confidence 99999987653322210 11112223345678899999999873 4433 2222322
Q ss_pred CCCCcceeeecCCCch-hhhH-hhcC--CCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccC-CCCCCCC
Q 042439 487 LPPSLKSLHVLSCSKL-ESIA-ERLD--NNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFP-EGGLPCA 561 (766)
Q Consensus 487 ~~~~L~~L~l~~~~~~-~~~~-~~~~--~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~ 561 (766)
.++|++|++++|... ..++ ..+. ..++|+.|++++|...+..|..+..+++|++|++++|...+.+| ..+..++
T Consensus 352 -l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~ 430 (680)
T 1ziw_A 352 -LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430 (680)
T ss_dssp -CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCT
T ss_pred -ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcc
Confidence 278999999988632 2222 2222 23689999999998777768889999999999999997766676 3567789
Q ss_pred CcceEEeccCcCccccCccCCCCCCCCeeEecCCCCC--CCCC-CCCCCCCcceeEeccccccchhhhhcccccCCCCCC
Q 042439 562 KLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVEL--PSLE-EDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSL 638 (766)
Q Consensus 562 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l--~~~~-~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L 638 (766)
+|++|++++|.+.+..+..+..+++|++|++++|... ..++ ....+++|+.|++++|. +. ...+..+..+++|
T Consensus 431 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~--l~--~i~~~~~~~l~~L 506 (680)
T 1ziw_A 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN--IA--NINDDMLEGLEKL 506 (680)
T ss_dssp TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC--CC--CCCTTTTTTCTTC
T ss_pred cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC--CC--cCChhhhcccccc
Confidence 9999999999987777888999999999999998632 3333 45778999999999962 22 1122338899999
Q ss_pred cEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcCcccCCCCCc--
Q 042439 639 RQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPKLKYFPEKGL-- 715 (766)
Q Consensus 639 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~-- 715 (766)
++|++++|. +..++...-.......+..+++|+.|++++ +.++.+|. .+..+++|++|++++ ++++.+|...+
T Consensus 507 ~~L~Ls~N~--l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 507 EILDLQHNN--LARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNN 582 (680)
T ss_dssp CEEECCSSC--CGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred CEEeCCCCC--ccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHcccccCcceeECCC-CCCCcCCHhHhCC
Confidence 999999973 444322110000001235678999999999 58999997 688999999999998 47888888543
Q ss_pred ccccceeeecCChhHHHHhhccCCcccc-cccCcceEEECCeEEEeCCC
Q 042439 716 PSSLLQLYIGGCPLIAEKCRKDGGQYWD-LLTHIPYVVIDRKWVFDDDS 763 (766)
Q Consensus 716 ~~~L~~L~i~~~~~l~~~~~~~~~~~~~-~i~~i~~v~~~~~~~~~~~~ 763 (766)
+++|++|++++|.. +.. ....+. ....++.+++.+++..++++
T Consensus 583 l~~L~~L~L~~N~l-~~~----~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 583 QVSLKSLNLQKNLI-TSV----EKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CTTCCEEECTTSCC-CBC----CHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCEEECCCCcC-Ccc----ChhHhcccccccCEEEccCCCcccCCc
Confidence 79999999999942 211 111112 45678888888888888775
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.1e-36 Score=342.70 Aligned_cols=521 Identities=17% Similarity=0.157 Sum_probs=283.0
Q ss_pred eEEEEecCCCCCCccccCCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeecCCCCceecCcccccCCCCCCCCCccE
Q 042439 102 QFCISGYGGTKFPAWLGDSSLPNLVTLKFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCLET 180 (766)
Q Consensus 102 ~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~ 180 (766)
.++..+.....+|..+. .++++|++++|.+.+..| .++++++|++|++++|......+..+.+ +++|++
T Consensus 16 ~~~c~~~~l~~iP~~l~----~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------l~~L~~ 85 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTLP----NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS------QHRLDT 85 (606)
T ss_dssp EEECTTSCCSSCCTTSC----TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTT------CTTCCE
T ss_pred eEECCCCCcccCcCCCC----CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccC------ccccCe
Confidence 34444444555555442 356666666666543333 3566666666666664322222222222 566666
Q ss_pred EeccCccchhhhhccCCCccccccCcccceecccccccccCC---CCCCCCCccEEEEecCCCcc---cccCCCCccceE
Q 042439 181 LIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKGP---FPEHLPALEMLVIEGCEELS---VSVSSLPALCKL 254 (766)
Q Consensus 181 L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~---~p~~l~~L~~L~l~~~~~l~---~~~~~~~~L~~L 254 (766)
|++++|..... .+..+..+++|++|++++|. +++. ....+++|++|++++|.... ..+..+++|+.|
T Consensus 86 L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 86 LVLTANPLIFM------AETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158 (606)
T ss_dssp EECTTCCCSEE------CTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred eeCCCCccccc------ChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence 66666653221 23345556666666666553 3311 11345666666666665322 123347899999
Q ss_pred EEcCCCCceeeccccccCCCCceeeccCCccccccCCCCCCCCCccEEEecccCCccchhcccCccccCCCCCCEEEEcc
Q 042439 255 QIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLKPQLPKLEELEINDMKEHTYIWKSHNGLLQDSCSLKRLTIAS 334 (766)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 334 (766)
++++|........ ....+++|+.+ ..+++++.+.. .++..+ ....|++|++++
T Consensus 159 ~L~~n~l~~~~~~------------------------~~~~l~~L~~l-~L~l~~n~l~~-~~~~~~-~~~~L~~L~l~~ 211 (606)
T 3t6q_A 159 DFQNNAIHYLSKE------------------------DMSSLQQATNL-SLNLNGNDIAG-IEPGAF-DSAVFQSLNFGG 211 (606)
T ss_dssp ECCSSCCCEECHH------------------------HHHTTTTCCSE-EEECTTCCCCE-ECTTTT-TTCEEEEEECTT
T ss_pred EcccCcccccChh------------------------hhhhhccccee-EEecCCCccCc-cChhHh-hhccccccccCC
Confidence 9999875443211 01134555522 23444444422 233333 346799999998
Q ss_pred CCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCc--cc-CcccCCCC--CccEEEecCCCCCcccCC--CCCCCCc
Q 042439 335 CPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLV--KL-PQSSLSLS--SLREIEIYGCWSLVSFPE--VALPSKL 407 (766)
Q Consensus 335 ~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~--~~-~~~~~~l~--~L~~L~L~~~~~l~~~~~--~~~l~~L 407 (766)
+..+..... .+.. ..++.+.+....... .+ +..+..+. +|++|++++|... .++. ...+++|
T Consensus 212 ~~~~~~~~~--------~l~~--~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L 280 (606)
T 3t6q_A 212 TQNLLVIFK--------GLKN--STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGL 280 (606)
T ss_dssp CSCHHHHHH--------HTTT--CEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTC
T ss_pred chhHHHHhh--------hccc--cchhheechhhccccccccChhHhchhhcCceeEEEeecCccC-ccCHHHhccccCC
Confidence 864432211 1100 122233332221111 00 11111221 5666666665332 2322 3345666
Q ss_pred ceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCC
Q 042439 408 RKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNL 487 (766)
Q Consensus 408 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~ 487 (766)
++|++++|. +..+|.. +..+++|++|++++|. ++.+ ....+ ..+
T Consensus 281 ~~L~l~~n~-l~~lp~~------------------------l~~l~~L~~L~l~~n~-l~~~-~~~~~----~~l----- 324 (606)
T 3t6q_A 281 QELDLTATH-LSELPSG------------------------LVGLSTLKKLVLSANK-FENL-CQISA----SNF----- 324 (606)
T ss_dssp SEEECTTSC-CSCCCSS------------------------CCSCTTCCEEECTTCC-CSBG-GGGCG----GGC-----
T ss_pred CEEeccCCc-cCCCChh------------------------hcccccCCEEECccCC-cCcC-chhhh----hcc-----
Confidence 666666654 3344332 2235566666666652 2222 11111 111
Q ss_pred CCCcceeeecCCCchhhhH-hhcCCCCCCCEEEeeeCCCCCcc--cccccCCCCCCEEEecCCCCccccCCCCCCCCCcc
Q 042439 488 PPSLKSLHVLSCSKLESIA-ERLDNNTSLETIDICYCGNLKNL--PSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLS 564 (766)
Q Consensus 488 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l--p~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~ 564 (766)
++|++|++++|.....++ ..+..+++|++|++++|...+.. +..+..+++|++|++++|......|..+..+++|+
T Consensus 325 -~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 325 -PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403 (606)
T ss_dssp -TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred -CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence 566777776666554443 33666777777777777544433 45566777777777777755555555666677777
Q ss_pred eEEeccCcCccccCc-cCCCCCCCCeeEecCCCCCCCCCC-CCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEE
Q 042439 565 KLRIHGCERLEALPK-GLHNLTSLQELTIGRGVELPSLEE-DGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLR 642 (766)
Q Consensus 565 ~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~ 642 (766)
.|++++|.+.+..|. .+..+++|++|++++|......+. ...+++|++|++++|. ........+..+..+++|++|+
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEE
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEE
Confidence 777777776655443 366777777777777754443332 3556777777777742 1111111123377788888888
Q ss_pred EeccCCCCccCC-CCcccccccCCCCCccccceEEeccCCCCcc-chhhhccCCCcceeecccCcCcccCCCCCc--ccc
Q 042439 643 ISGCDDDMVSFP-PKADDIRLGTALPLPASLTSLLIFSFPNLER-LSSSIVDLQNLTELYLEDCPKLKYFPEKGL--PSS 718 (766)
Q Consensus 643 l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~ 718 (766)
+++| .+..++ ..+ ..+++|++|+++++ .++. .|..+..+++| +|++++| .++.+++..+ +++
T Consensus 483 Ls~n--~l~~~~~~~~---------~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 483 LSFC--DLSSIDQHAF---------TSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQ 548 (606)
T ss_dssp CTTS--CCCEECTTTT---------TTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHT
T ss_pred CCCC--ccCccChhhh---------ccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCC
Confidence 8886 344443 333 46778888888884 5554 44578888888 8888886 4556655333 678
Q ss_pred cceeeecCChh
Q 042439 719 LLQLYIGGCPL 729 (766)
Q Consensus 719 L~~L~i~~~~~ 729 (766)
|++|++++||-
T Consensus 549 L~~L~l~~N~~ 559 (606)
T 3t6q_A 549 QRTINLRQNPL 559 (606)
T ss_dssp SSEEECTTCCE
T ss_pred CCEEeCCCCCc
Confidence 88888888874
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.7e-36 Score=342.06 Aligned_cols=498 Identities=16% Similarity=0.131 Sum_probs=252.6
Q ss_pred CCcceEEEEecCCCCCCc-cccCCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeecCCCCceec-CcccccCCCCCC
Q 042439 98 EILEQFCISGYGGTKFPA-WLGDSSLPNLVTLKFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRL-GSEFYGNDPPIP 174 (766)
Q Consensus 98 ~~L~~L~l~~~~~~~lp~-~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~~~~ 174 (766)
+++++|+++++.+..++. .+ ..+++|++|++++|.+.+..| .++++++|++|++++|. ++.+ +..+.+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~------ 102 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSF--SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSG------ 102 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTT------
T ss_pred CCcCEEECCCCCcCEeChhhc--cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCC------
Confidence 466666666666655544 33 356666666666666544334 36666666666666654 3333 222222
Q ss_pred CCCccEEeccCccchhhhhccCCCccccccCcccceecccccccccC-CCCC---CCCCccEEEEecCCCccc---ccCC
Q 042439 175 FPCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKG-PFPE---HLPALEMLVIEGCEELSV---SVSS 247 (766)
Q Consensus 175 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~p~---~l~~L~~L~l~~~~~l~~---~~~~ 247 (766)
+++|++|++++|..... .+..++.+++|++|++++|. +++ .+|. .+++|++|++++|..... .+..
T Consensus 103 l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 103 LTSLENLVAVETKLASL------ESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp CTTCCEEECTTSCCCCS------SSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred cccCCEEEccCCccccc------cccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhh
Confidence 66666666666654221 12345566666666666664 331 3443 345566666665542221 1111
Q ss_pred CCc----cceEEEcCCCCceeeccccccCCCCceeeccCCccccccCCCCCCCCCccEEEecccCCccchhcccCccccC
Q 042439 248 LPA----LCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLKPQLPKLEELEINDMKEHTYIWKSHNGLLQD 323 (766)
Q Consensus 248 ~~~----L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~ 323 (766)
+++ ++.|++++|....+. +..+... .|+.++++++...+...+..+..
T Consensus 176 l~~L~~~l~~L~l~~n~l~~~~---------------------------~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~ 227 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPIDFIQ---------------------------DQAFQGI-KLHELTLRGNFNSSNIMKTCLQN 227 (606)
T ss_dssp HHHCTTCCCEEECTTCCCCEEC---------------------------TTTTTTC-EEEEEEEESCCSCHHHHHHHHHT
T ss_pred hhccccccceeeccCCCcceeC---------------------------cccccCc-eeeeeeccCCccchhHHHHHhcc
Confidence 222 224555555432211 1122222 45555555554332333445667
Q ss_pred CCCCCEEEEcc--CCC---ccccchhhhHHHHhhhhhccCcccEEEe-ecCCCCcccCcccCCCCCccEEEecCCCCCcc
Q 042439 324 SCSLKRLTIAS--CPK---LQSLVAEEEKDQQQQLCELSCRLEYLRL-SGCQGLVKLPQSSLSLSSLREIEIYGCWSLVS 397 (766)
Q Consensus 324 ~~~L~~L~l~~--~~~---l~~l~~~~~~~~~~~l~~~~~~L~~L~L-~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~ 397 (766)
++.|+.+++.. +.. +..+... .+..+.. ..++.+++ ..+.+.+.+|. +..+++|++|++++|.. ..
T Consensus 228 l~~L~~l~l~~~~~~~~~~l~~~~~~----~~~~l~~--l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~-~~ 299 (606)
T 3vq2_A 228 LAGLHVHRLILGEFKDERNLEIFEPS----IMEGLCD--VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI-KY 299 (606)
T ss_dssp TTTCEEEEEEEECCTTSCCCSCCCGG----GGTTGGG--SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC-CC
T ss_pred ccccccccccccccccCCcccccChH----Hhhhhhh--ccHhheeccccccccccccc-cccCCCCCEEEecCccc-hh
Confidence 77777766532 111 1111111 0111111 25667777 44455555554 77788888888888743 55
Q ss_pred cCCCCCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCcc
Q 042439 398 FPEVALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPA 477 (766)
Q Consensus 398 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 477 (766)
++....+++|++|++++|.. +.+|. + .+++|++|++++|..+..+ ...
T Consensus 300 l~~l~~~~~L~~L~l~~n~l-~~lp~-------------------------~-~l~~L~~L~l~~n~~~~~~-~~~---- 347 (606)
T 3vq2_A 300 LEDVPKHFKWQSLSIIRCQL-KQFPT-------------------------L-DLPFLKSLTLTMNKGSISF-KKV---- 347 (606)
T ss_dssp CCCCCTTCCCSEEEEESCCC-SSCCC-------------------------C-CCSSCCEEEEESCSSCEEC-CCC----
T ss_pred hhhccccccCCEEEcccccC-ccccc-------------------------C-CCCccceeeccCCcCccch-hhc----
Confidence 66566677888888887775 55542 1 2567777777776444322 111
Q ss_pred ccccccccCCCCCcceeeecCCCchhh--hHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccC-
Q 042439 478 TLESLEVGNLPPSLKSLHVLSCSKLES--IAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFP- 554 (766)
Q Consensus 478 ~l~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~- 554 (766)
..++|++|++++|..... ++..+..+++|++|++++|. +..+|..+..+++|++|++++|...+..|
T Consensus 348 ---------~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 348 ---------ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp ---------CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred ---------cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccCh
Confidence 115566666666654433 24555566666666666654 33445555666666666666664433333
Q ss_pred CCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCC-CC-CCCCCCCcceeEeccccccchhhhhccccc
Q 042439 555 EGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPS-LE-EDGLPTNLHSLWIAGNMEIWKSTIEWGRGF 632 (766)
Q Consensus 555 ~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~-~~-~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~ 632 (766)
..+..+++|+.|++++|.+.+..|..+..+++|++|++++|..... ++ ..+.+++|++|++++|. .....+..+
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~ 493 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ----LEQISWGVF 493 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC----CCEECTTTT
T ss_pred hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc----CCccChhhh
Confidence 2445566666666666665555555566666666666666543321 12 22444555555555531 111112224
Q ss_pred CCCCCCcEEEEeccCCCCccC-CCCcccccccCCCCCccccceEEeccCCCCccchhhhccCC-CcceeecccCc
Q 042439 633 HRFSSLRQLRISGCDDDMVSF-PPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQ-NLTELYLEDCP 705 (766)
Q Consensus 633 ~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~-~L~~L~l~~c~ 705 (766)
..+++|++|++++| .+..+ |..+ ..+++|++|++++ +.++.+|..+..++ +|++|++++|+
T Consensus 494 ~~l~~L~~L~Ls~N--~l~~~~~~~~---------~~l~~L~~L~l~~-N~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 494 DTLHRLQLLNMSHN--NLLFLDSSHY---------NQLYSLSTLDCSF-NRIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTCTTCCEEECCSS--CCSCEEGGGT---------TTCTTCCEEECTT-SCCCCEESCGGGSCTTCCEEECCSCC
T ss_pred cccccCCEEECCCC--cCCCcCHHHc---------cCCCcCCEEECCC-CcCcccCHhHhhhcccCcEEEccCCC
Confidence 45555555555553 12222 2222 2344445555544 23444444444443 24555554443
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.8e-36 Score=338.94 Aligned_cols=504 Identities=13% Similarity=0.070 Sum_probs=338.0
Q ss_pred CcceEEEEecCCCCC-CccccCCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeecCCCCceecCcccccCCCCCCCC
Q 042439 99 ILEQFCISGYGGTKF-PAWLGDSSLPNLVTLKFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFP 176 (766)
Q Consensus 99 ~L~~L~l~~~~~~~l-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 176 (766)
++++|+++++.+..+ |..+ ..+++|++|+|++|.+.+..| .++++++|++|++++|......+..+.+ ++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~ 105 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTF--SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG------PK 105 (606)
T ss_dssp TCCEEECTTCCCSEECTTTS--TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS------CT
T ss_pred cCcEEEccCCccCcCChhHh--ccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc------cc
Confidence 677777777776666 3344 457777777777777655444 3777777777777775433332333322 77
Q ss_pred CccEEeccCccchhhhhccCCCccccccCcccceecccccccccC-CCCC--CCCCccEEEEecCCCcc---cccCCCCc
Q 042439 177 CLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKG-PFPE--HLPALEMLVIEGCEELS---VSVSSLPA 250 (766)
Q Consensus 177 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~p~--~l~~L~~L~l~~~~~l~---~~~~~~~~ 250 (766)
+|++|++++|..... .+..+..+++|++|++++|. +++ .+|. .+++|++|++++|.... ..++.+++
T Consensus 106 ~L~~L~L~~n~i~~l------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 106 ALKHLFFIQTGISSI------DFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp TCCEEECTTSCCSCG------GGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred cccEeeccccCcccC------CcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcc
Confidence 777777777764321 13345667777788777764 442 2232 35777888887776332 24566777
Q ss_pred cc--eEEEcCCCCceeeccccccCCCCceeeccCCccccccCCCCCCC--CCccEEEecccCCccchhcccCccccCCCC
Q 042439 251 LC--KLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLKPQL--PKLEELEINDMKEHTYIWKSHNGLLQDSCS 326 (766)
Q Consensus 251 L~--~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~ 326 (766)
|+ .|++++|...... |..+ .+|+.|.+.++.... ..+..+.+
T Consensus 179 L~~l~L~l~~n~l~~~~---------------------------~~~~~~~~L~~L~l~~~~~~~-------~~~~~l~~ 224 (606)
T 3t6q_A 179 ATNLSLNLNGNDIAGIE---------------------------PGAFDSAVFQSLNFGGTQNLL-------VIFKGLKN 224 (606)
T ss_dssp CCSEEEECTTCCCCEEC---------------------------TTTTTTCEEEEEECTTCSCHH-------HHHHHTTT
T ss_pred cceeEEecCCCccCccC---------------------------hhHhhhccccccccCCchhHH-------HHhhhccc
Confidence 77 7777777644322 1122 234444444333111 12233333
Q ss_pred C--CEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccC-CCCC
Q 042439 327 L--KRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFP-EVAL 403 (766)
Q Consensus 327 L--~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~ 403 (766)
+ +.+.+..+..+....... ..+..+. ..+|+.|++++|.+.+..+..+..+++|++|++++|.. +.+| ....
T Consensus 225 ~~l~~l~~~~~~~~~~~~i~~--~~~~~l~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~l~~ 299 (606)
T 3t6q_A 225 STIQSLWLGTFEDMDDEDISP--AVFEGLC--EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVG 299 (606)
T ss_dssp CEEEEEECCCCTTSCCCCCCG--GGGGGGG--GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC-SCCCSSCCS
T ss_pred cchhheechhhccccccccCh--hHhchhh--cCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc-CCCChhhcc
Confidence 3 333443333322111110 1111110 13899999999997776666789999999999999954 4666 4556
Q ss_pred CCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCcccccccc
Q 042439 404 PSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLE 483 (766)
Q Consensus 404 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~ 483 (766)
+++|++|++++|......+.. +..+++|++|++++|.....+ +...+..
T Consensus 300 l~~L~~L~l~~n~l~~~~~~~------------------------~~~l~~L~~L~l~~n~~~~~~-~~~~~~~------ 348 (606)
T 3t6q_A 300 LSTLKKLVLSANKFENLCQIS------------------------ASNFPSLTHLSIKGNTKRLEL-GTGCLEN------ 348 (606)
T ss_dssp CTTCCEEECTTCCCSBGGGGC------------------------GGGCTTCSEEECCSCSSCCBC-CSSTTTT------
T ss_pred cccCCEEECccCCcCcCchhh------------------------hhccCcCCEEECCCCCccccc-chhhhhc------
Confidence 899999999998754433322 345789999999998543333 3332322
Q ss_pred ccCCCCCcceeeecCCCchhhh--HhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCC-CCCC
Q 042439 484 VGNLPPSLKSLHVLSCSKLESI--AERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEG-GLPC 560 (766)
Q Consensus 484 ~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~ 560 (766)
.++|++|++++|...... +..+..+++|++|++++|...+..|..+..+++|++|++++|......+.. +..+
T Consensus 349 ----l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 349 ----LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp ----CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred ----cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence 288999999999877654 777899999999999999766666778889999999999999665555543 6788
Q ss_pred CCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCC-C---CCCCCCCCcceeEeccccccchhhhhcccccCCCC
Q 042439 561 AKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPS-L---EEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFS 636 (766)
Q Consensus 561 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~-~---~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~ 636 (766)
++|++|++++|.+.+..|..+..+++|++|++++|..... + .....+++|++|++++| . .....+..+..++
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~---l~~~~~~~~~~l~ 500 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-D---LSSIDQHAFTSLK 500 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-C---CCEECTTTTTTCT
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-c---cCccChhhhcccc
Confidence 9999999999998888888899999999999999965431 1 23466899999999995 2 2222244588999
Q ss_pred CCcEEEEeccCCCCccC-CCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcCcc
Q 042439 637 SLRQLRISGCDDDMVSF-PPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPKLK 708 (766)
Q Consensus 637 ~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~ 708 (766)
+|++|++++|. +..+ |..+ ..+++| .|+++++ .++.++. .+..+++|++|++++|+...
T Consensus 501 ~L~~L~Ls~N~--l~~~~~~~l---------~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 501 MMNHVDLSHNR--LTSSSIEAL---------SHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TCCEEECCSSC--CCGGGGGGG---------TTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCCEEECCCCc--cCcCChhHh---------Cccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCccc
Confidence 99999999973 3333 3333 467888 9999994 7776655 67889999999999987543
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.7e-35 Score=330.33 Aligned_cols=507 Identities=13% Similarity=0.061 Sum_probs=359.8
Q ss_pred CCCCceEEEecCCCCCCCccchhhHHHHhhcCCCCCCcceEEEEecCCCCC-CccccCCCCCCeeEEEEecCCCCCCCC-
Q 042439 63 KNLRELLLRWALNTDGSSSREAKTENDVLDMLKPHEILEQFCISGYGGTKF-PAWLGDSSLPNLVTLKFENCDMCTALP- 140 (766)
Q Consensus 63 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-p~~~~~~~l~~L~~L~L~~~~~~~~l~- 140 (766)
++|++|+++.+... ......+..+++|++|+++++.+..+ |..+ ..+++|++|+|++|.+.+..|
T Consensus 32 ~~l~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~--~~l~~L~~L~Ls~n~l~~~~p~ 98 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK-----------ILKSYSFSNFSELQWLDLSRCEIETIEDKAW--HGLHHLSNLILTGNPIQSFSPG 98 (606)
T ss_dssp TTCCEEECTTSCCC-----------EECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECTTCCCCCCCTT
T ss_pred CCcCEEECCCCCcC-----------EeChhhccCCccCcEEeCCCCcccccCHHHh--hchhhcCEeECCCCcccccChh
Confidence 78999999875541 11234678889999999999988877 4455 579999999999999766656
Q ss_pred CCCCcCcccceeecCCCCceecCcccccCCCCCCCCCccEEeccCccchhhhhccCCCccccccCcccceeccccccccc
Q 042439 141 SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLK 220 (766)
Q Consensus 141 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 220 (766)
.++++++|++|++++|. ++.++....+ .+++|++|++++|.... . .++..+..+++|++|++++|. ++
T Consensus 99 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~-----~l~~L~~L~L~~n~l~~-~----~lp~~~~~l~~L~~L~Ls~n~-l~ 166 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETK-LASLESFPIG-----QLITLKKLNVAHNFIHS-C----KLPAYFSNLTNLVHVDLSYNY-IQ 166 (606)
T ss_dssp SSTTCTTCCEEECTTSC-CCCSSSSCCT-----TCTTCCEEECCSSCCCC-C----CCCGGGGTCTTCCEEECCSSC-CC
T ss_pred hcCCcccCCEEEccCCc-cccccccccC-----CCCCCCEEeCCCCcccc-e----echHhHhhcCCCCEEEccCCc-ce
Confidence 49999999999999975 4444422233 29999999999997532 1 156778899999999999885 66
Q ss_pred CCCCCCCCC-------ccEEEEecCCCccc--ccCCCCccceEEEcCCCCceeeccccccCCCCceeeccCCccccccCC
Q 042439 221 GPFPEHLPA-------LEMLVIEGCEELSV--SVSSLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGP 291 (766)
Q Consensus 221 ~~~p~~l~~-------L~~L~l~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 291 (766)
+..|..+.. +..|++++|..... ......+|++|++++|........ .
T Consensus 167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~---------------------- 223 (606)
T 3vq2_A 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK-T---------------------- 223 (606)
T ss_dssp EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHH-H----------------------
T ss_pred ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHH-H----------------------
Confidence 444544432 34899998874321 222234899999999864311000 0
Q ss_pred CCCCCCCccEEEe--cccCCccchhcccCccccCCC--CCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeec
Q 042439 292 LKPQLPKLEELEI--NDMKEHTYIWKSHNGLLQDSC--SLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSG 367 (766)
Q Consensus 292 ~~~~~~~L~~L~~--~~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 367 (766)
....+++++.+.+ ..+.....+.......+.++. .++.+++..+..+...... ...+++|+.|++++
T Consensus 224 ~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~---------~~~l~~L~~L~l~~ 294 (606)
T 3vq2_A 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK---------FHCLANVSAMSLAG 294 (606)
T ss_dssp HHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS---------CGGGTTCSEEEEES
T ss_pred HhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc---------cccCCCCCEEEecC
Confidence 0113445554433 222221111111222222222 4566677555555443322 12338999999999
Q ss_pred CCCCcccCcccCCCCCccEEEecCCCCCcccCCCCCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCc
Q 042439 368 CQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPEVALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSS 447 (766)
Q Consensus 368 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 447 (766)
|.+ ..+| .+..+++|++|++++|.. +.+|.. .+++|++|++++|.....++
T Consensus 295 ~~~-~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~------------------------- 345 (606)
T 3vq2_A 295 VSI-KYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFK------------------------- 345 (606)
T ss_dssp CCC-CCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECC-------------------------
T ss_pred ccc-hhhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchh-------------------------
Confidence 985 5666 788999999999999976 788866 89999999999996555431
Q ss_pred ccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCC
Q 042439 448 RRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLK 527 (766)
Q Consensus 448 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 527 (766)
+..+++|++|++++|. ++.. ...+..+.. .++|++|++++|.... +|..+..+++|+.|++++|...+
T Consensus 346 -~~~l~~L~~L~ls~n~-l~~~---~~~~~~~~~------~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 346 -KVALPSLSYLDLSRNA-LSFS---GCCSYSDLG------TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp -CCCCTTCCEEECCSSC-EEEE---EECCHHHHC------CSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEES
T ss_pred -hccCCCCCEEECcCCc-cCCC---cchhhhhcc------CCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCC
Confidence 2347899999999873 3322 111222222 2789999999988544 66788899999999999997666
Q ss_pred ccc-ccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccc-cCccCCCCCCCCeeEecCCCCCCCCCC-C
Q 042439 528 NLP-SGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEA-LPKGLHNLTSLQELTIGRGVELPSLEE-D 604 (766)
Q Consensus 528 ~lp-~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~~~~l~~~~~-~ 604 (766)
..| ..+..+++|++|++++|......|..+..+++|++|++++|.+.+. +|..+..+++|++|++++|......+. .
T Consensus 414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 655 5788899999999999987777788888899999999999998774 688899999999999999965554443 4
Q ss_pred CCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCC
Q 042439 605 GLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFP 681 (766)
Q Consensus 605 ~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 681 (766)
..+++|++|++++|. .....|..+..+++|++|++++| .+..+|..+. ..+++|+.|++++++
T Consensus 494 ~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~l~~N--~l~~~p~~~~--------~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNN----LLFLDSSHYNQLYSLSTLDCSFN--RIETSKGILQ--------HFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTCTTCCEEECCSSC----CSCEEGGGTTTCTTCCEEECTTS--CCCCEESCGG--------GSCTTCCEEECCSCC
T ss_pred cccccCCEEECCCCc----CCCcCHHHccCCCcCCEEECCCC--cCcccCHhHh--------hhcccCcEEEccCCC
Confidence 778999999999962 22223455899999999999997 4668887652 233469999999954
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.6e-33 Score=325.09 Aligned_cols=526 Identities=16% Similarity=0.096 Sum_probs=284.4
Q ss_pred eEEEEecCCCCCCccccCCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeecCCCCceecCcccccCCCCCCCCCccE
Q 042439 102 QFCISGYGGTKFPAWLGDSSLPNLVTLKFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCLET 180 (766)
Q Consensus 102 ~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~ 180 (766)
..+.+++....+|. + .++|++|+|++|.+.+..| .++++++|++|++++|..+..++...++. +++|++
T Consensus 8 ~~dcs~~~L~~vP~-l----p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~-----L~~L~~ 77 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-V----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN-----LPNLRI 77 (844)
T ss_dssp EEEESCCCSSCCCS-S----CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSS-----CTTCCE
T ss_pred EEEccCCCCCCCCC-C----CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcC-----CCCCCE
Confidence 34455566667776 3 4678888888877654444 47788888888888776665553332232 778888
Q ss_pred EeccCccchhhhhccCCCccccccCcccceecccccccccCCCCC-----CCCCccEEEEecCCCcc----cccCCCCcc
Q 042439 181 LIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKGPFPE-----HLPALEMLVIEGCEELS----VSVSSLPAL 251 (766)
Q Consensus 181 L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~-----~l~~L~~L~l~~~~~l~----~~~~~~~~L 251 (766)
|++++|..... .+..+..+++|++|++++|. +++.+|. .+++|++|++++|.... ..++.+++|
T Consensus 78 L~Ls~N~l~~~------~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 78 LDLGSSKIYFL------HPDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp EECTTCCCCEE------CTTSSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred EECCCCcCccc------CHhHccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 88887764321 35566778888888887774 5543432 34555555555554211 134455556
Q ss_pred ceEEEcCCCCceeeccccccCCCCceeeccCCccccccCCCCCCCCCccEEEecccCCccchhcccCccccCC--CCCCE
Q 042439 252 CKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLKPQLPKLEELEINDMKEHTYIWKSHNGLLQDS--CSLKR 329 (766)
Q Consensus 252 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~--~~L~~ 329 (766)
++|++++|.... .....+..+ ++|+.
T Consensus 151 ~~L~Ls~N~i~~----------------------------------------------------~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 151 KSIDFSSNQIFL----------------------------------------------------VCEHELEPLQGKTLSF 178 (844)
T ss_dssp CEEEEESSCCCC----------------------------------------------------CCSGGGHHHHHCSSCC
T ss_pred CEEECCCCcCCe----------------------------------------------------eCHHHcccccCCccce
Confidence 666665554211 111122222 56666
Q ss_pred EEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCC---CCCccEEEecCCCCCccc--------
Q 042439 330 LTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLS---LSSLREIEIYGCWSLVSF-------- 398 (766)
Q Consensus 330 L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~---l~~L~~L~L~~~~~l~~~-------- 398 (766)
|+++++.-....+...... ...+ ....|++|++++|.+.+..+..+.. ..+++.|.+..+.....+
T Consensus 179 L~L~~n~l~~~~~~~~~~~-~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKC-MNPF--RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp CEECCSBSCCCCCCCCCSS-SCTT--TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred EECCCCccccccccchhhc-CCcc--ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 6666654322221110000 0000 0013677777776655544443332 245666666532111100
Q ss_pred C--CCC--CCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCC
Q 042439 399 P--EVA--LPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNE 474 (766)
Q Consensus 399 ~--~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 474 (766)
. ... ..++|+.|++++|......+. .+..+++|+.|+++++ .+..+ ....
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~------------------------~~~~l~~L~~L~L~~n-~i~~~-~~~~ 309 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSR------------------------VFETLKDLKVLNLAYN-KINKI-ADEA 309 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSC------------------------CSSSCCCCCEEEEESC-CCCEE-CTTT
T ss_pred ChhhhhccccCCccEEECCCCcccccChh------------------------hhhcCCCCCEEECCCC-cCCCC-ChHH
Confidence 0 001 135666666666653322222 2334556666666664 23332 2222
Q ss_pred CccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccC
Q 042439 475 LPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFP 554 (766)
Q Consensus 475 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~ 554 (766)
+.. .++|++|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|. +..++
T Consensus 310 ~~~----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~ 378 (844)
T 3j0a_A 310 FYG----------LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIH 378 (844)
T ss_dssp TTT----------CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCS
T ss_pred hcC----------CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCccc
Confidence 221 1566666666666555555666666666666666665433334445666666666666663 33332
Q ss_pred CCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCC---CCCCCCcceeEeccccccchhhhhcccc
Q 042439 555 EGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEE---DGLPTNLHSLWIAGNMEIWKSTIEWGRG 631 (766)
Q Consensus 555 ~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~N~~~l~~~~~~~~~ 631 (766)
. +++|+.|++++|.+. .+|.. ..+++.|++++|.. ..++. ...+++|++|++++|... .... ...
T Consensus 379 ~----~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l-~~l~~~~~~~~l~~L~~L~Ls~N~l~-~~~~--~~~ 446 (844)
T 3j0a_A 379 F----IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRL-ENLDILYFLLRVPHLQILILNQNRFS-SCSG--DQT 446 (844)
T ss_dssp S----CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCC-CSSTTHHHHTTCTTCCEEEEESCCCC-CCCS--SSS
T ss_pred C----CCCcchhccCCCCcc-ccccc---ccccceeecccCcc-ccCchhhhhhcCCccceeeCCCCccc-cccc--ccc
Confidence 2 556666666666543 33332 34566666666632 22221 235667777777775211 1111 111
Q ss_pred cCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcCcccC
Q 042439 632 FHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPKLKYF 710 (766)
Q Consensus 632 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l 710 (766)
+..+++|+.|++++|. +..++... .....+..+++|+.|++++ +.++.++. .+..+++|++|++++| .++.+
T Consensus 447 ~~~~~~L~~L~Ls~N~--l~~~~~~~---~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l 519 (844)
T 3j0a_A 447 PSENPSLEQLFLGENM--LQLAWETE---LCWDVFEGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNSN-RLTVL 519 (844)
T ss_dssp SCSCTTCCBCEEESCC--CSSSCCSC---CCSSCSSCBCCEECCCCCH-HHHTTCCTTSSSSCCSCSEEEEESC-CCSSC
T ss_pred cccCCccccccCCCCc--cccccccc---cchhhhcCcccccEEECCC-CcccccChhHccchhhhheeECCCC-CCCcc
Confidence 4456777777777763 22222100 0011234567888888888 46776665 5677888888888885 67777
Q ss_pred CCCCcccccceeeecCChhHHHHhhccCCcccccccCcceEEECCeEEEeCCC
Q 042439 711 PEKGLPSSLLQLYIGGCPLIAEKCRKDGGQYWDLLTHIPYVVIDRKWVFDDDS 763 (766)
Q Consensus 711 ~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~~i~~v~~~~~~~~~~~~ 763 (766)
+...+.++|+.|++++|..-. .....+..++.+++.+|+..++++
T Consensus 520 ~~~~~~~~L~~L~Ls~N~l~~--------~~~~~~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 520 SHNDLPANLEILDISRNQLLA--------PNPDVFVSLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCCCCSCCCEEEEEEECCCC--------CCSCCCSSCCEEEEEEECCCCSSS
T ss_pred ChhhhhccccEEECCCCcCCC--------CChhHhCCcCEEEecCCCcccccc
Confidence 776666788888888875321 112224577788888888777664
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=314.82 Aligned_cols=285 Identities=14% Similarity=0.056 Sum_probs=190.1
Q ss_pred CcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccC-CCCCCCCcceEEEccCCCCCccccccccCcchhHHHH
Q 042439 358 CRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFP-EVALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEIL 436 (766)
Q Consensus 358 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l 436 (766)
++|+.|++++|.+.+..+..+..+++|++|++++|......+ ....+++|++|++++|......+..
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------ 333 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN------------ 333 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS------------
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH------------
Confidence 678888888888777777778888888888888886554444 3445788888888887643332322
Q ss_pred HHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCC
Q 042439 437 MEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLE 516 (766)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 516 (766)
+..+++|+.|+++++ .+..+ +...+.. .++|++|++++|.... +..+++|+
T Consensus 334 ------------~~~l~~L~~L~L~~N-~i~~~-~~~~~~~----------l~~L~~L~Ls~N~l~~-----i~~~~~L~ 384 (844)
T 3j0a_A 334 ------------FYGLPKVAYIDLQKN-HIAII-QDQTFKF----------LEKLQTLDLRDNALTT-----IHFIPSIP 384 (844)
T ss_dssp ------------CSSCTTCCEEECCSC-CCCCC-CSSCSCS----------CCCCCEEEEETCCSCC-----CSSCCSCS
T ss_pred ------------hcCCCCCCEEECCCC-CCCcc-ChhhhcC----------CCCCCEEECCCCCCCc-----ccCCCCcc
Confidence 345677888888876 34444 3332322 2778888888876542 33377888
Q ss_pred EEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCC--CCCCCCCcceEEeccCcCccccCc-cCCCCCCCCeeEec
Q 042439 517 TIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPE--GGLPCAKLSKLRIHGCERLEALPK-GLHNLTSLQELTIG 593 (766)
Q Consensus 517 ~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~ 593 (766)
.|++++|. +..+|.. ..+++.|++++|. +..++. .+..+++|+.|++++|.+.+..+. .+..+++|++|+++
T Consensus 385 ~L~l~~N~-l~~l~~~---~~~l~~L~ls~N~-l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 385 DIFLSGNK-LVTLPKI---NLTANLIHLSENR-LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459 (844)
T ss_dssp EEEEESCC-CCCCCCC---CTTCCEEECCSCC-CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEE
T ss_pred hhccCCCC-ccccccc---ccccceeecccCc-cccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCC
Confidence 88888875 4455543 4678888888874 444432 233677888888888886654332 34567888888888
Q ss_pred CCCCCCCC------CCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCC
Q 042439 594 RGVELPSL------EEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALP 667 (766)
Q Consensus 594 ~~~~l~~~------~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 667 (766)
+|...... .....+++|+.|++++| . .....+..+..+++|+.|++++| .+..+|+..
T Consensus 460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N--~--l~~~~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~---------- 523 (844)
T 3j0a_A 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHN--Y--LNSLPPGVFSHLTALRGLSLNSN--RLTVLSHND---------- 523 (844)
T ss_dssp SCCCSSSCCSCCCSSCSSCBCCEECCCCCHH--H--HTTCCTTSSSSCCSCSEEEEESC--CCSSCCCCC----------
T ss_pred CCccccccccccchhhhcCcccccEEECCCC--c--ccccChhHccchhhhheeECCCC--CCCccChhh----------
Confidence 88543211 12345688888888886 1 22222344788889999999987 566676654
Q ss_pred CccccceEEeccCCCCccchhhhccCCCcceeecccCcCc
Q 042439 668 LPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKL 707 (766)
Q Consensus 668 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 707 (766)
..++|+.|++++ |.+..++. ..+++|+.|++++|+..
T Consensus 524 ~~~~L~~L~Ls~-N~l~~~~~--~~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 524 LPANLEILDISR-NQLLAPNP--DVFVSLSVLDITHNKFI 560 (844)
T ss_dssp CCSCCCEEEEEE-ECCCCCCS--CCCSSCCEEEEEEECCC
T ss_pred hhccccEEECCC-CcCCCCCh--hHhCCcCEEEecCCCcc
Confidence 347889999988 57776653 23568888888887643
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.9e-32 Score=302.64 Aligned_cols=475 Identities=16% Similarity=0.153 Sum_probs=278.5
Q ss_pred EEEEecCCCCCCccccCCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeecCCCCceecCcccccCCCCCCCCCccEE
Q 042439 103 FCISGYGGTKFPAWLGDSSLPNLVTLKFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCLETL 181 (766)
Q Consensus 103 L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L 181 (766)
.+.+++.++.+|..+ .++|++|++++|.+.+..| .++++++|++|++++|. ++.+....++. +++|++|
T Consensus 10 c~~~~~~l~~ip~~~----~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~-----l~~L~~L 79 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL----TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYS-----LGSLEHL 79 (549)
T ss_dssp EECTTSCCSSCCSCC----CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTT-----CTTCCEE
T ss_pred EECCCCccccccccC----CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccc-----cccCCEE
Confidence 445556677788765 3788888888888655444 48888888888888864 44443322222 7888888
Q ss_pred eccCccchhhhhccCCCccccccCcccceecccccccccC-CCC---CCCCCccEEEEecCCCcc----cccCCCCccce
Q 042439 182 IFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKG-PFP---EHLPALEMLVIEGCEELS----VSVSSLPALCK 253 (766)
Q Consensus 182 ~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~p---~~l~~L~~L~l~~~~~l~----~~~~~~~~L~~ 253 (766)
++++|..... .+..++.+++|++|++++|. +++ .+| ..+++|++|++++|..+. ..+..+++|++
T Consensus 80 ~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 80 DLSDNHLSSL------SSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp ECTTSCCCSC------CHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred ECCCCccCcc------CHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 8888864321 23346778888888888875 542 222 234555555555554221 12334445555
Q ss_pred EEEcCCCCceeeccccccCCCCceeeccCCccccccCCCCCCCCCccEEEecccCCccchhcccCccccCCCCCCEEEEc
Q 042439 254 LQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLKPQLPKLEELEINDMKEHTYIWKSHNGLLQDSCSLKRLTIA 333 (766)
Q Consensus 254 L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 333 (766)
|++++|. +. ...+..+..+++|++|+++
T Consensus 153 L~L~~n~---------------------------------------------------l~-~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 153 LEIKALS---------------------------------------------------LR-NYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp EEEEETT---------------------------------------------------CC-EECTTTTTTCSEEEEEEEE
T ss_pred eeccCCc---------------------------------------------------cc-ccChhhhhccccCceEecc
Confidence 5555443 21 1223456778888999998
Q ss_pred cCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCccc--C-cccCCCCCccEEEecCCCCCcccC-----CCCCCC
Q 042439 334 SCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKL--P-QSSLSLSSLREIEIYGCWSLVSFP-----EVALPS 405 (766)
Q Consensus 334 ~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~--~-~~~~~l~~L~~L~L~~~~~l~~~~-----~~~~l~ 405 (766)
.+. +..++.. ....+++|++|++++|.+.+.. + .....+++|++|++++|......+ ....++
T Consensus 181 ~n~-~~~~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 251 (549)
T 2z81_A 181 LSE-SAFLLEI--------FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251 (549)
T ss_dssp CSB-STTHHHH--------HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCT
T ss_pred cCc-ccccchh--------hHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhc
Confidence 764 3332221 1122488999999999865531 1 123457889999999885432211 123467
Q ss_pred CcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCcccccccccc
Q 042439 406 KLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVG 485 (766)
Q Consensus 406 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~ 485 (766)
+|+.+++++|..... +.. .......+..+++++.+.+.++. +........++.. .
T Consensus 252 ~L~~l~l~~~~~~~~-~~~-----------------~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~------~ 306 (549)
T 2z81_A 252 ELSEVEFDDCTLNGL-GDF-----------------NPSESDVVSELGKVETVTIRRLH-IPQFYLFYDLSTV------Y 306 (549)
T ss_dssp TCCEEEEESCEEECC-SCC-----------------CCCTTTCCCCCTTCCEEEEESCB-CSCGGGSCCCCHH------H
T ss_pred ccccccccccccccc-ccc-----------------cccchhhhhhhcccccccccccc-cchhhhcccchhh------h
Confidence 888888888763221 100 00011123346678888887753 1111011111110 1
Q ss_pred CCCCCcceeeecCCCchhhhHhhc-CCCCCCCEEEeeeCCCCCcccc---cccCCCCCCEEEecCCCCccccC---CCCC
Q 042439 486 NLPPSLKSLHVLSCSKLESIAERL-DNNTSLETIDICYCGNLKNLPS---GLHNLHQLQEISIGRCGNLESFP---EGGL 558 (766)
Q Consensus 486 ~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~lp~---~l~~l~~L~~L~l~~~~~l~~l~---~~~~ 558 (766)
...++|++|++++|... .+|..+ ..+++|++|++++|...+.+|. .+..+++|++|++++|.. ..++ ..+.
T Consensus 307 ~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~ 384 (549)
T 2z81_A 307 SLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILL 384 (549)
T ss_dssp HHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC-CCHHHHHHHGG
T ss_pred hhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc-cccccchhhhh
Confidence 12256777777776643 455443 4677777888877765555432 356677777888777743 3332 2345
Q ss_pred CCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCC
Q 042439 559 PCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSL 638 (766)
Q Consensus 559 ~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L 638 (766)
.+++|++|++++|.+. .+|..+..+++|++|++++|. +..++. ..+++|++|++++|. +.. + ...+++|
T Consensus 385 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~-l~~l~~-~~~~~L~~L~Ls~N~--l~~---~---~~~l~~L 453 (549)
T 2z81_A 385 TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG-IRVVKT-CIPQTLEVLDVSNNN--LDS---F---SLFLPRL 453 (549)
T ss_dssp GCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC-CSCCCT-TSCTTCSEEECCSSC--CSC---C---CCCCTTC
T ss_pred cCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC-cccccc-hhcCCceEEECCCCC--hhh---h---cccCChh
Confidence 5677777777777644 567777777777777777774 333332 224577777777751 111 1 3466777
Q ss_pred cEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcC
Q 042439 639 RQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPK 706 (766)
Q Consensus 639 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~ 706 (766)
++|++++| .+..+|+.. .+++|+.|++++ +.++.++. .+..+++|++|++++|+.
T Consensus 454 ~~L~Ls~N--~l~~ip~~~----------~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 454 QELYISRN--KLKTLPDAS----------LFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CEEECCSS--CCSSCCCGG----------GCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred cEEECCCC--ccCcCCCcc----------cCccCCEEecCC-CccCCcCHHHHhcCcccCEEEecCCCc
Confidence 77777775 344666532 356677777776 35655554 466677777777777653
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-32 Score=304.79 Aligned_cols=484 Identities=17% Similarity=0.165 Sum_probs=265.9
Q ss_pred CCcceEEEEecCCCCCCccccCCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeecCCCCceecCcccccCCCCCCCC
Q 042439 98 EILEQFCISGYGGTKFPAWLGDSSLPNLVTLKFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFP 176 (766)
Q Consensus 98 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 176 (766)
+++++|+++++.+..++.... ..+++|++|+|++|.+.+..+ .++++++|++|++++|. ++.++...++. ++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-----l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG-----LS 100 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTT-TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT-----CT
T ss_pred ccccEEEccCCccCccChhHh-hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcC-----cc
Confidence 478888888887776654222 467888888888887544434 37788888888888764 44444322222 78
Q ss_pred CccEEeccCccchhhhhccCCCccccccCcccceecccccccccC-CCCC---CCCCccEEEEecCCCcc---cccCCCC
Q 042439 177 CLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKG-PFPE---HLPALEMLVIEGCEELS---VSVSSLP 249 (766)
Q Consensus 177 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~p~---~l~~L~~L~l~~~~~l~---~~~~~~~ 249 (766)
+|++|++++|..... ....++.+++|++|++++|. +++ .+|. .+++|++|++++|.... ..+..++
T Consensus 101 ~L~~L~L~~n~l~~l------~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 101 SLQKLVAVETNLASL------ENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp TCCEEECTTSCCCCS------TTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred ccccccccccccccC------CCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence 888888888754221 11246677888888887774 442 3453 35667777777665322 1233344
Q ss_pred cc----ceEEEcCCCCceeeccccccCCCCceeeccCCccccccCCCCCCCCCccEEEecccCCccchhcccCccccCCC
Q 042439 250 AL----CKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLKPQLPKLEELEINDMKEHTYIWKSHNGLLQDSC 325 (766)
Q Consensus 250 ~L----~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~ 325 (766)
+| +.+++++|..... .+..+..+ .|+..+++++..........+..+.
T Consensus 174 ~L~~~~~~L~l~~n~l~~~---------------------------~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~ 225 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNFI---------------------------QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLA 225 (570)
T ss_dssp TCTTCCCEEECTTCCCCEE---------------------------CTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTT
T ss_pred ccchhhhhcccCCCCceec---------------------------CHHHhccC-cceeEecccccccccchhhhhcCcc
Confidence 44 5666666653321 12233322 3333333333211111123345555
Q ss_pred CCCEEEEcc--C---CCccccchhhhHHHHhhhhhccCcccEEEeecC-CCCcccCcccCCCCCccEEEecCCCCCcccC
Q 042439 326 SLKRLTIAS--C---PKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGC-QGLVKLPQSSLSLSSLREIEIYGCWSLVSFP 399 (766)
Q Consensus 326 ~L~~L~l~~--~---~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 399 (766)
.++.+.+.. . ..+..+....+ ..+.. ..++.++++++ ...+..+..+..+++|++|++++|.. ..+|
T Consensus 226 ~l~~~~l~~~~~~~~~~l~~~~~~~~----~~l~~--l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l~ 298 (570)
T 2z63_A 226 GLEVHRLVLGEFRNEGNLEKFDKSAL----EGLCN--LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVK 298 (570)
T ss_dssp TCEEEEEEEEECCCCSSCEECCTTTT----GGGGG--SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-CSCC
T ss_pred ccceeeeccccccCchhhhhcchhhh----ccccc--cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc-hhhh
Confidence 555544321 1 11222222111 11100 25677777777 44556677777888888888888843 3455
Q ss_pred C-CCCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccc
Q 042439 400 E-VALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPAT 478 (766)
Q Consensus 400 ~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 478 (766)
. ...+ +|++|++++|... .+|.. .+++|++|+++++.....+ +.
T Consensus 299 ~~~~~~-~L~~L~l~~n~~~-~l~~~--------------------------~l~~L~~L~l~~n~~~~~~-~~------ 343 (570)
T 2z63_A 299 DFSYNF-GWQHLELVNCKFG-QFPTL--------------------------KLKSLKRLTFTSNKGGNAF-SE------ 343 (570)
T ss_dssp BCCSCC-CCSEEEEESCBCS-SCCBC--------------------------BCSSCCEEEEESCBSCCBC-CC------
T ss_pred hhhccC-CccEEeeccCccc-ccCcc--------------------------cccccCEEeCcCCcccccc-cc------
Confidence 3 3334 8888888877633 33321 2567777777776422211 11
Q ss_pred cccccccCCCCCcceeeecCCCchhhh--HhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccC-C
Q 042439 479 LESLEVGNLPPSLKSLHVLSCSKLESI--AERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFP-E 555 (766)
Q Consensus 479 l~~l~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~-~ 555 (766)
..+++|++|++++|...... +..+..+++|++|++++|. +..++..+..+++|++|++++|......+ .
T Consensus 344 -------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 344 -------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp -------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSC
T ss_pred -------ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchh
Confidence 11255666666666544322 4445556666666666654 33333345556666666666653333222 2
Q ss_pred CCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCC
Q 042439 556 GGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRF 635 (766)
Q Consensus 556 ~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l 635 (766)
.+..+++|++|++++|...+..|..+..+++|++|++++|.... ...|..+..+
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------------------~~~p~~~~~l 469 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--------------------------NFLPDIFTEL 469 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG--------------------------GEECSCCTTC
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc--------------------------ccchhhhhcc
Confidence 34455566666666665555555555555555555555553210 1223336667
Q ss_pred CCCcEEEEeccCCCCccC-CCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcCcccCC
Q 042439 636 SSLRQLRISGCDDDMVSF-PPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPKLKYFP 711 (766)
Q Consensus 636 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~ 711 (766)
++|++|++++| .+..+ |..+ ..+++|+.|++++| .++.++. .+..+++|++|++++|+.-...|
T Consensus 470 ~~L~~L~l~~n--~l~~~~~~~~---------~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 470 RNLTFLDLSQC--QLEQLSPTAF---------NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TTCCEEECTTS--CCCEECTTTT---------TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCCEEECCCC--ccccCChhhh---------hcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 77777777775 23333 3332 35567777777773 5666654 56778888888888876554444
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-31 Score=300.46 Aligned_cols=463 Identities=17% Similarity=0.140 Sum_probs=295.9
Q ss_pred CCcceEEEEecCCCCCC-ccccCCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeecCCCCceecCcccccCCCCCCC
Q 042439 98 EILEQFCISGYGGTKFP-AWLGDSSLPNLVTLKFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPF 175 (766)
Q Consensus 98 ~~L~~L~l~~~~~~~lp-~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 175 (766)
++|++|+++++.+..++ ..+ ..+++|++|++++|.+.+..| .++++++|++|++++|. ++.++...++. +
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-----l 97 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDL--RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGP-----L 97 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTT--SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTT-----C
T ss_pred CCccEEECcCCccCccChhhh--hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhcc-----C
Confidence 46666666666655542 333 346666666666666544333 36666666666666643 33333322222 6
Q ss_pred CCccEEeccCccchhhhhccCCCccccccCcccceecccccccccCCCC----CCCCCccEEEEecCCCc---ccccCCC
Q 042439 176 PCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKGPFP----EHLPALEMLVIEGCEEL---SVSVSSL 248 (766)
Q Consensus 176 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p----~~l~~L~~L~l~~~~~l---~~~~~~~ 248 (766)
++|++|++++|.... .. .+..+..+++|++|++++|..+. .+| ..+++|++|++++|... ...+..+
T Consensus 98 ~~L~~L~Ls~n~l~~-~~----~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 98 SSLKYLNLMGNPYQT-LG----VTSLFPNLTNLQTLRIGNVETFS-EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp TTCCEEECTTCCCSS-SC----SSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred CCCcEEECCCCcccc-cc----hhhhhhccCCccEEECCCCcccc-ccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 666666666665321 00 23345566777777776664333 332 24667777777776532 2355667
Q ss_pred CccceEEEcCCCCceeeccccccCCCCceeeccCCccccccCCCCCCCCCccEEEecccCCccchhcccCccccCCCCCC
Q 042439 249 PALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLKPQLPKLEELEINDMKEHTYIWKSHNGLLQDSCSLK 328 (766)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~L~ 328 (766)
++|+.|+++.+.... .+...+..+++|+
T Consensus 172 ~~L~~L~l~~n~~~~----------------------------------------------------~~~~~~~~l~~L~ 199 (549)
T 2z81_A 172 RDIHHLTLHLSESAF----------------------------------------------------LLEIFADILSSVR 199 (549)
T ss_dssp SEEEEEEEECSBSTT----------------------------------------------------HHHHHHHSTTTBS
T ss_pred ccCceEecccCcccc----------------------------------------------------cchhhHhhccccc
Confidence 788888888775322 1122244577888
Q ss_pred EEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcc----cCcccCCCCCccEEEecCCCCCc--cc----
Q 042439 329 RLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVK----LPQSSLSLSSLREIEIYGCWSLV--SF---- 398 (766)
Q Consensus 329 ~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~l~--~~---- 398 (766)
+|+++++. ++.+.... ..+...+++|+.|++++|.+.+. ++..+..+++|+.+++++|...+ .+
T Consensus 200 ~L~L~~n~-l~~~~~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 273 (549)
T 2z81_A 200 YLELRDTN-LARFQFSP-----LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE 273 (549)
T ss_dssp EEEEESCB-CTTCCCCC-----CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCT
T ss_pred EEEccCCc-cccccccc-----cchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 88888753 33321000 00112347899999999986543 33445678999999999995432 11
Q ss_pred -CCCCCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCcc
Q 042439 399 -PEVALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPA 477 (766)
Q Consensus 399 -~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 477 (766)
.....+++|+.+++.++..-... .. ... +..+...++|++|+++++. ++.+ |.
T Consensus 274 ~~~~~~l~~L~~L~l~~~~i~~~~-~~---~~l---------------~~~~~~~~~L~~L~l~~n~-l~~i------p~ 327 (549)
T 2z81_A 274 SDVVSELGKVETVTIRRLHIPQFY-LF---YDL---------------STVYSLLEKVKRITVENSK-VFLV------PC 327 (549)
T ss_dssp TTCCCCCTTCCEEEEESCBCSCGG-GS---CCC---------------CHHHHHSTTCCEEEEESSC-CCCC------CH
T ss_pred hhhhhhhcccccccccccccchhh-hc---ccc---------------hhhhhhcccceEEEeccCc-cccC------CH
Confidence 12345789999999887532211 00 000 0011225689999999973 4433 33
Q ss_pred ccccccccCCCCCcceeeecCCCchhhhHh---hcCCCCCCCEEEeeeCCCCCccc---ccccCCCCCCEEEecCCCCcc
Q 042439 478 TLESLEVGNLPPSLKSLHVLSCSKLESIAE---RLDNNTSLETIDICYCGNLKNLP---SGLHNLHQLQEISIGRCGNLE 551 (766)
Q Consensus 478 ~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~l~~lp---~~l~~l~~L~~L~l~~~~~l~ 551 (766)
.+. ...++|++|++++|...+.+|. .++.+++|+.|++++|.. ..++ ..+..+++|++|++++| .+.
T Consensus 328 ~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~l~~L~~L~Ls~N-~l~ 400 (549)
T 2z81_A 328 SFS-----QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLKNLTSLDISRN-TFH 400 (549)
T ss_dssp HHH-----HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC-CCHHHHHHHGGGCTTCCEEECTTC-CCC
T ss_pred HHH-----hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc-cccccchhhhhcCCCCCEEECCCC-CCc
Confidence 210 0127899999999999887753 378899999999999964 4443 35788999999999999 556
Q ss_pred ccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccc
Q 042439 552 SFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRG 631 (766)
Q Consensus 552 ~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~ 631 (766)
.+|..+..+++|++|++++|.+. .+|..+ .++|++|++++|.... ++ ..+++|++|++++| .+. .+|.
T Consensus 401 ~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~-~~--~~l~~L~~L~Ls~N--~l~---~ip~- 468 (549)
T 2z81_A 401 PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDS-FS--LFLPRLQELYISRN--KLK---TLPD- 468 (549)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSC-CC--CCCTTCCEEECCSS--CCS---SCCC-
T ss_pred cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhh-hc--ccCChhcEEECCCC--ccC---cCCC-
Confidence 89988888999999999999854 455433 3689999999995433 32 56889999999996 222 3333
Q ss_pred cCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccch
Q 042439 632 FHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLS 687 (766)
Q Consensus 632 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 687 (766)
...+++|+.|++++| .+..+++.. +..+++|+.|++++++-....|
T Consensus 469 ~~~l~~L~~L~Ls~N--~l~~~~~~~--------~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 469 ASLFPVLLVMKISRN--QLKSVPDGI--------FDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGCTTCCEEECCSS--CCCCCCTTG--------GGGCTTCCEEECCSSCBCCCHH
T ss_pred cccCccCCEEecCCC--ccCCcCHHH--------HhcCcccCEEEecCCCccCCCc
Confidence 467899999999997 455666542 2467899999999975444444
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=2.3e-32 Score=310.19 Aligned_cols=320 Identities=13% Similarity=0.111 Sum_probs=207.8
Q ss_pred ccCCCCccceEEEcCCCCceeeccccccCCCCceeeccCCccccccCCCCCCCC--CccEEEecccCCccchhcccCccc
Q 042439 244 SVSSLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLKPQLP--KLEELEINDMKEHTYIWKSHNGLL 321 (766)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~L~~L~~~~l~~~~~~~~~~~~~~ 321 (766)
.++.+++|++|++++|.......... +. .....+..+.+|..+. +++.|+.++++++...+.++ ..+
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~---------~~-~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l 269 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEA---------WE-NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFL 269 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSS---------CS-CTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTT
T ss_pred HHhcccCCCEEECcCCcccccccccc---------cc-ccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHH
Confidence 56678888888888887322000000 00 0000111122677766 77777777776666544344 568
Q ss_pred cCCCCCCEEEEccCCCccc--cchhhhHHHHhhhhhccCcccEEEeecCCCCcccCc--ccCCCCCccEEEecCCCCCcc
Q 042439 322 QDSCSLKRLTIASCPKLQS--LVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQ--SSLSLSSLREIEIYGCWSLVS 397 (766)
Q Consensus 322 ~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~ 397 (766)
..+++|++|+++++..++. +|..... +.. ...+++|++|++++|.+. .+|. .+..+++|++|++++|...+.
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~--L~~-~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQA--LAD-APVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHH--HHH-SGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHh--hhc-cccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc
Confidence 8899999999999864553 4432211 100 012379999999999976 8888 899999999999999977668
Q ss_pred cCCCCCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCc-eeEEEecCCCCccccccCCCCc
Q 042439 398 FPEVALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSL-LEKLEIESCRSLTCIFSKNELP 476 (766)
Q Consensus 398 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~ 476 (766)
+|....+++|++|++++|... .+|.. +..+++ |++|+++++. ++.+ |
T Consensus 346 ip~~~~l~~L~~L~L~~N~l~-~lp~~------------------------l~~l~~~L~~L~Ls~N~-l~~l------p 393 (636)
T 4eco_A 346 LPAFGSEIKLASLNLAYNQIT-EIPAN------------------------FCGFTEQVENLSFAHNK-LKYI------P 393 (636)
T ss_dssp CCCCEEEEEESEEECCSSEEE-ECCTT------------------------SEEECTTCCEEECCSSC-CSSC------C
T ss_pred hhhhCCCCCCCEEECCCCccc-cccHh------------------------hhhhcccCcEEEccCCc-Cccc------c
Confidence 886566889999999988633 55443 344667 8889988864 3333 2
Q ss_pred cccccccccCCCCCcceeeecCCCchhhhHhhcC-------CCCCCCEEEeeeCCCCCcccccc-cCCCCCCEEEecCCC
Q 042439 477 ATLESLEVGNLPPSLKSLHVLSCSKLESIAERLD-------NNTSLETIDICYCGNLKNLPSGL-HNLHQLQEISIGRCG 548 (766)
Q Consensus 477 ~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~l~~lp~~l-~~l~~L~~L~l~~~~ 548 (766)
..+... ..++|++|++++|...+.+|..+. .+++|+.|++++|... .+|..+ ..+++|++|++++|.
T Consensus 394 ~~~~~~----~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 394 NIFDAK----SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp SCCCTT----CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSC
T ss_pred hhhhhc----ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCC
Confidence 221110 114688888888888877777776 6778888888888644 565544 457888888888884
Q ss_pred CccccCCCCCCC--------CCcceEEeccCcCccccCccCC--CCCCCCeeEecCCCCCCCCCCCCCCCCcceeEecc
Q 042439 549 NLESFPEGGLPC--------AKLSKLRIHGCERLEALPKGLH--NLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAG 617 (766)
Q Consensus 549 ~l~~l~~~~~~~--------~~L~~L~l~~~~~~~~~p~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 617 (766)
. ..+|...... ++|+.|++++|.+. .+|..+. .+++|++|++++|.....+.....+++|++|++++
T Consensus 469 l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 469 L-TEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp C-SBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCS
T ss_pred C-CCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCC
Confidence 4 4677654432 27888888887765 6776665 77888888888775444222334455666666644
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3e-30 Score=287.43 Aligned_cols=250 Identities=18% Similarity=0.144 Sum_probs=118.6
Q ss_pred CCCCccEEEecccCCcc-------chhcccCccccCCCCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeec
Q 042439 295 QLPKLEELEINDMKEHT-------YIWKSHNGLLQDSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSG 367 (766)
Q Consensus 295 ~~~~L~~L~~~~l~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 367 (766)
.+.++..|+..+++.+. ..+.. ..+..+++|+.|+++++. +...... ..... ...++|++|++++
T Consensus 185 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~-l~~~~~~---~~~~~--~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 185 SVKTVANLELSNIKCVLEDNKCSYFLSIL--AKLQTNPKLSNLTLNNIE-TTWNSFI---RILQL--VWHTTVWYFSISN 256 (520)
T ss_dssp CCTTCSEEEECCEEECCSTTTTHHHHHHH--HGGGGCTTCCEEEEEEEE-EEHHHHH---HHHHH--HHTSSCSEEEEEE
T ss_pred hhhcccceeeccccccccccccceeecch--hhhccccchhhccccccc-cCHHHHH---HHHHH--hhhCcccEEEeec
Confidence 45566666666666553 21111 245667777777776653 2211000 00000 0124677777777
Q ss_pred CCCCcccCccc-----CCCCCccEEEecCCCCCcccCCCC--C---CCCcceEEEccCCCCCccccccccCcchhHHHHH
Q 042439 368 CQGLVKLPQSS-----LSLSSLREIEIYGCWSLVSFPEVA--L---PSKLRKIEICSCDALKSLPEAWMCDTNSSLEILM 437 (766)
Q Consensus 368 ~~~~~~~~~~~-----~~l~~L~~L~L~~~~~l~~~~~~~--~---l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~ 437 (766)
|.+.+.+|..+ ..+++|+.+++++|.. .+|... . ..+|++|++++|.......
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------------- 319 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--------------- 319 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC---------------
T ss_pred ccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc---------------
Confidence 77665666666 6667777777776644 333100 0 1346666666654221110
Q ss_pred HhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchh--hhHhhcCCCCCC
Q 042439 438 EEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLE--SIAERLDNNTSL 515 (766)
Q Consensus 438 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L 515 (766)
...+++|++|++++|. +... .+..+..+ ++|++|++++|...+ .+|..++.+++|
T Consensus 320 -----------~~~l~~L~~L~Ls~n~-l~~~-----~~~~~~~l------~~L~~L~L~~N~l~~l~~~~~~~~~l~~L 376 (520)
T 2z7x_B 320 -----------PSKISPFLHLDFSNNL-LTDT-----VFENCGHL------TELETLILQMNQLKELSKIAEMTTQMKSL 376 (520)
T ss_dssp -----------CSSCCCCCEEECCSSC-CCTT-----TTTTCCCC------SSCCEEECCSSCCCBHHHHHHHHTTCTTC
T ss_pred -----------hhhCCcccEEEeECCc-cChh-----hhhhhccC------CCCCEEEccCCccCccccchHHHhhCCCC
Confidence 0124455555555542 2111 11111111 445555555555443 344445555555
Q ss_pred CEEEeeeCCCCCccccc-ccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecC
Q 042439 516 ETIDICYCGNLKNLPSG-LHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGR 594 (766)
Q Consensus 516 ~~L~l~~~~~l~~lp~~-l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 594 (766)
++|++++|...+.+|.. +..+++|++|++++|...+.+|..+. ++|+.|++++|.+. .+|..+..+++|++|++++
T Consensus 377 ~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVAS 453 (520)
T ss_dssp CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCC
Confidence 55555555433334432 34455555555555544343333222 35555555555433 4444444555555555555
Q ss_pred C
Q 042439 595 G 595 (766)
Q Consensus 595 ~ 595 (766)
|
T Consensus 454 N 454 (520)
T 2z7x_B 454 N 454 (520)
T ss_dssp S
T ss_pred C
Confidence 5
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=6.4e-31 Score=296.84 Aligned_cols=483 Identities=15% Similarity=0.093 Sum_probs=324.4
Q ss_pred CCCCceEEEecCCCCCCCccchhhHHHHhhcCCCCCCcceEEEEecCCCCCCccccCCCCCCeeEEEEecCCCCCCCC-C
Q 042439 63 KNLRELLLRWALNTDGSSSREAKTENDVLDMLKPHEILEQFCISGYGGTKFPAWLGDSSLPNLVTLKFENCDMCTALP-S 141 (766)
Q Consensus 63 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~~~~~l~-~ 141 (766)
+++++|+++.+.... .....+..+++|++|++++|.+..++.... ..+++|++|+|++|.+.+..| .
T Consensus 28 ~~l~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~-~~l~~L~~L~L~~n~l~~~~~~~ 95 (570)
T 2z63_A 28 FSTKNLDLSFNPLRH-----------LGSYSFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNPIQSLALGA 95 (570)
T ss_dssp SSCCEEECCSCCCCE-----------ECTTTTTTCSSCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccEEEccCCccCc-----------cChhHhhCCCCceEEECCCCcCCccCcccc-cCchhCCEEeCcCCcCCccCHhh
Confidence 579999998765411 123467788899999999998887754332 579999999999999655554 4
Q ss_pred CCCcCcccceeecCCCCceecCcccccCCCCCCCCCccEEeccCccchhhhhccCCCccccccCcccceecccccccccC
Q 042439 142 VGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKG 221 (766)
Q Consensus 142 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 221 (766)
++++++|++|++++|. ++.++....+ .+++|++|++++|.... +. ++..+..+++|++|++++|. +++
T Consensus 96 ~~~l~~L~~L~L~~n~-l~~l~~~~~~-----~l~~L~~L~L~~n~l~~-~~----lp~~~~~l~~L~~L~l~~n~-l~~ 163 (570)
T 2z63_A 96 FSGLSSLQKLVAVETN-LASLENFPIG-----HLKTLKELNVAHNLIQS-FK----LPEYFSNLTNLEHLDLSSNK-IQS 163 (570)
T ss_dssp TTTCTTCCEEECTTSC-CCCSTTCSCT-----TCTTCCEEECCSSCCCC-CC----CCGGGGGCTTCCEEECTTSC-CCE
T ss_pred hcCccccccccccccc-cccCCCcccc-----ccccccEEecCCCccce-ec----ChhhhcccCCCCEEeCcCCc-cce
Confidence 8999999999999864 5555432222 39999999999997432 11 46678889999999999885 553
Q ss_pred CCCC---CCCCc----cEEEEecCCCccc---ccCCCCccceEEEcCCCCceeeccccccCCCCceeeccCCccccccCC
Q 042439 222 PFPE---HLPAL----EMLVIEGCEELSV---SVSSLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGP 291 (766)
Q Consensus 222 ~~p~---~l~~L----~~L~l~~~~~l~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 291 (766)
..|. .+.+| +.+++++|..-.. .+.. .+|++|++.++..... ....
T Consensus 164 ~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~-~~~~---------------------- 219 (570)
T 2z63_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLN-VMKT---------------------- 219 (570)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCTT-HHHH----------------------
T ss_pred ecHHHccchhccchhhhhcccCCCCceecCHHHhcc-CcceeEeccccccccc-chhh----------------------
Confidence 3333 23455 7889988874322 2333 3799999998742210 0000
Q ss_pred CCCCCCCccEEEe--cccCCccchhcccCccccCCC--CCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeec
Q 042439 292 LKPQLPKLEELEI--NDMKEHTYIWKSHNGLLQDSC--SLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSG 367 (766)
Q Consensus 292 ~~~~~~~L~~L~~--~~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 367 (766)
....+.+++.+.+ ........+...+...+.+++ .++.++++++..+....... + ..+++|++|++++
T Consensus 220 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~----~----~~l~~L~~L~l~~ 291 (570)
T 2z63_A 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL----F----NCLTNVSSFSLVS 291 (570)
T ss_dssp HHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT----T----GGGTTCSEEEEES
T ss_pred hhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhh----h----cCcCcccEEEecC
Confidence 0012334433222 111111111112223333333 24566776664443322211 1 1238999999999
Q ss_pred CCCCcccCcccCCCCCccEEEecCCCCCcccCCCCCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCc
Q 042439 368 CQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPEVALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSS 447 (766)
Q Consensus 368 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 447 (766)
|.+ ..+|..+..+ +|++|++++|... .+|. ..+++|++|++++|......+.
T Consensus 292 ~~l-~~l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~------------------------ 343 (570)
T 2z63_A 292 VTI-ERVKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSE------------------------ 343 (570)
T ss_dssp CEE-CSCCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCC------------------------
T ss_pred ccc-hhhhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccccccc------------------------
Confidence 985 4688888888 9999999999654 5664 4689999999999875444332
Q ss_pred ccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCC
Q 042439 448 RRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLK 527 (766)
Q Consensus 448 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 527 (766)
..+++|++|++++|. +... ...+..+.. .++|++|++++|......+. +..+++|+.|++++|...+
T Consensus 344 --~~~~~L~~L~l~~n~-l~~~---~~~~~~~~~------~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~ 410 (570)
T 2z63_A 344 --VDLPSLEFLDLSRNG-LSFK---GCCSQSDFG------TTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ 410 (570)
T ss_dssp --CBCTTCCEEECCSSC-CBEE---EEEEHHHHT------CSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEES
T ss_pred --ccCCCCCEEeCcCCc-cCcc---ccccccccc------cCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccc
Confidence 237899999999874 3322 001121122 27899999999886654444 8899999999999987555
Q ss_pred ccc-ccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCc-cccCccCCCCCCCCeeEecCCCCCCCCC-CC
Q 042439 528 NLP-SGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERL-EALPKGLHNLTSLQELTIGRGVELPSLE-ED 604 (766)
Q Consensus 528 ~lp-~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~ 604 (766)
..| ..+..+++|++|++++|......|..+..+++|++|++++|.+. +.+|..+..+++|++|++++|......+ ..
T Consensus 411 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~ 490 (570)
T 2z63_A 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490 (570)
T ss_dssp CTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh
Confidence 544 46788999999999999777777778888999999999999977 5788899999999999999996544433 33
Q ss_pred CCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEecc
Q 042439 605 GLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGC 646 (766)
Q Consensus 605 ~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~ 646 (766)
..+++|++|++++|. +... .+..+..+++|+.|++++|
T Consensus 491 ~~l~~L~~L~l~~n~--l~~~--~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 491 NSLSSLQVLNMASNQ--LKSV--PDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp TTCTTCCEEECCSSC--CSCC--CTTTTTTCTTCCEEECCSS
T ss_pred hcccCCCEEeCCCCc--CCCC--CHHHhhcccCCcEEEecCC
Confidence 556677777777641 1111 1222566666777777664
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.1e-30 Score=300.61 Aligned_cols=356 Identities=15% Similarity=0.134 Sum_probs=228.2
Q ss_pred ccCCCCccceEEEcCCCCceeeccccccCCCCceeeccCCccccccCCCCCCCC--CccEEEecccCCccchhcccCccc
Q 042439 244 SVSSLPALCKLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLKPQLP--KLEELEINDMKEHTYIWKSHNGLL 321 (766)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~L~~L~~~~l~~~~~~~~~~~~~~ 321 (766)
.++.+++|+.|++++|........... .. ...+...|.+|..+. +++.|+.++++++...+.+| ..+
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~---------~~-~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l 511 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDW---------ED-ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFL 511 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSC---------SC-TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGG
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccc---------cc-cccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHH
Confidence 566677888888888763220000000 00 000223345777766 77777777776666544444 668
Q ss_pred cCCCCCCEEEEccCCCccc--cchhhhHHHHhhhhhccCcccEEEeecCCCCcccCc--ccCCCCCccEEEecCCCCCcc
Q 042439 322 QDSCSLKRLTIASCPKLQS--LVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQ--SSLSLSSLREIEIYGCWSLVS 397 (766)
Q Consensus 322 ~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~ 397 (766)
..+++|++|+++++..++. +|.... .+......+++|++|++++|.+. .+|. .+.++++|++|++++|... .
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~--~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~ 587 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWT--RLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-H 587 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHH--HHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-B
T ss_pred hCCCCCCEEECcCCCCcccccchHHHH--hhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-c
Confidence 8999999999999864553 443221 11101123369999999999976 8888 8999999999999999655 8
Q ss_pred cCCCCCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCc-eeEEEecCCCCccccccCCCCc
Q 042439 398 FPEVALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSL-LEKLEIESCRSLTCIFSKNELP 476 (766)
Q Consensus 398 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~ 476 (766)
+|....+++|+.|++++|... .+|.. +..+++ |+.|++++|. ++.+ |
T Consensus 588 lp~~~~L~~L~~L~Ls~N~l~-~lp~~------------------------l~~l~~~L~~L~Ls~N~-L~~l------p 635 (876)
T 4ecn_A 588 LEAFGTNVKLTDLKLDYNQIE-EIPED------------------------FCAFTDQVEGLGFSHNK-LKYI------P 635 (876)
T ss_dssp CCCCCTTSEESEEECCSSCCS-CCCTT------------------------SCEECTTCCEEECCSSC-CCSC------C
T ss_pred chhhcCCCcceEEECcCCccc-cchHH------------------------HhhccccCCEEECcCCC-CCcC------c
Confidence 887777999999999998844 66544 344667 9999999874 4333 2
Q ss_pred cccccccccCCCCCcceeeecCCCchhhhHhh---cC--CCCCCCEEEeeeCCCCCccccccc-CCCCCCEEEecCCCCc
Q 042439 477 ATLESLEVGNLPPSLKSLHVLSCSKLESIAER---LD--NNTSLETIDICYCGNLKNLPSGLH-NLHQLQEISIGRCGNL 550 (766)
Q Consensus 477 ~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~---~~--~l~~L~~L~l~~~~~l~~lp~~l~-~l~~L~~L~l~~~~~l 550 (766)
..+... ..++|+.|++++|...+.+|.. +. .+++|+.|++++|... .+|..+. .+++|+.|++++| .+
T Consensus 636 ~~~~~~----~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N-~L 709 (876)
T 4ecn_A 636 NIFNAK----SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN-LM 709 (876)
T ss_dssp SCCCTT----CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC-CC
T ss_pred hhhhcc----ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC-cC
Confidence 221111 1145899999998877655432 22 3458889999988644 6666554 7889999999988 44
Q ss_pred cccCCCCCCC--------CCcceEEeccCcCccccCccCC--CCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccc
Q 042439 551 ESFPEGGLPC--------AKLSKLRIHGCERLEALPKGLH--NLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNME 620 (766)
Q Consensus 551 ~~l~~~~~~~--------~~L~~L~l~~~~~~~~~p~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~ 620 (766)
..+|...... ++|+.|++++|.+. .+|..+. .+++|+.|++++|.....+.....+++|+.|++++|..
T Consensus 710 ~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ 788 (876)
T 4ecn_A 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRD 788 (876)
T ss_dssp SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBC
T ss_pred CccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCC
Confidence 5777655432 38888888888755 6777776 78888888888885444323345566777777765310
Q ss_pred --cchhhhhcccccCCCCCCcEEEEeccCCCCccCCC
Q 042439 621 --IWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPP 655 (766)
Q Consensus 621 --~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 655 (766)
.-.....+|..+..+++|+.|++++| .+..+|.
T Consensus 789 ls~N~l~~~ip~~l~~L~~L~~L~Ls~N--~L~~Ip~ 823 (876)
T 4ecn_A 789 AEGNRILRQWPTGITTCPSLIQLQIGSN--DIRKVDE 823 (876)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSS--CCCBCCS
T ss_pred cccccccccChHHHhcCCCCCEEECCCC--CCCccCH
Confidence 00112233344555555555555554 2244444
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2e-30 Score=288.87 Aligned_cols=219 Identities=15% Similarity=0.118 Sum_probs=116.6
Q ss_pred CcceeeecCCCchhhhHhhc-----CCCCCCCEEEeeeCCCCCccc-ccccCC---CCCCEEEecCCCCccccCCCCCCC
Q 042439 490 SLKSLHVLSCSKLESIAERL-----DNNTSLETIDICYCGNLKNLP-SGLHNL---HQLQEISIGRCGNLESFPEGGLPC 560 (766)
Q Consensus 490 ~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~l~~lp-~~l~~l---~~L~~L~l~~~~~l~~l~~~~~~~ 560 (766)
+|++|++++|...+.+|..+ +.+++|+.+++++|.. .+| ..+..+ ++|+.|++++|.. ..++. ...+
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l-~~~~~-~~~l 323 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRM-VHMLC-PSKI 323 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCC-CCCCC-CSSC
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcc-ccccc-hhhC
Confidence 35555555544444444444 5555555555555543 333 222222 4455666655532 21110 1344
Q ss_pred CCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCC--CCC-CCCCCCCcceeEeccccccchhhhhcccccCCCCC
Q 042439 561 AKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELP--SLE-EDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSS 637 (766)
Q Consensus 561 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~--~~~-~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~ 637 (766)
++|++|++++|.+.+.+|..+..+++|++|++++|.... .++ ..+.+++|++|++++|... ...+. ..+..+++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~-~~l~~--~~~~~l~~ 400 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS-YDEKK--GDCSWTKS 400 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB-CCGGG--CSCCCCTT
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC-ccccc--chhccCcc
Confidence 556666666655555555555556666666665553221 111 1244555666666654111 10111 11556677
Q ss_pred CcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCCCCc--
Q 042439 638 LRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPEKGL-- 715 (766)
Q Consensus 638 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-- 715 (766)
|++|++++|.. ...+|.. .+++|+.|++++ ++++.+|..+..+++|++|++++| .++.+|...+
T Consensus 401 L~~L~Ls~N~l-~~~~~~~-----------l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~ 466 (520)
T 2z7x_B 401 LLSLNMSSNIL-TDTIFRC-----------LPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDR 466 (520)
T ss_dssp CCEEECCSSCC-CGGGGGS-----------CCTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred CCEEECcCCCC-Ccchhhh-----------hcccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCccCHHHhcc
Confidence 77777777531 1222322 225777777777 477777776667888888888875 5667776422
Q ss_pred ccccceeeecCChh
Q 042439 716 PSSLLQLYIGGCPL 729 (766)
Q Consensus 716 ~~~L~~L~i~~~~~ 729 (766)
+++|++|++++||.
T Consensus 467 l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 467 LTSLQKIWLHTNPW 480 (520)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CCcccEEECcCCCC
Confidence 67788888887764
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=3.2e-30 Score=292.57 Aligned_cols=314 Identities=16% Similarity=0.125 Sum_probs=227.1
Q ss_pred CcccEEEeecCCCCcccCcccCCCCCccEEEecCCC-CCc-ccCC-CCC------CCCcceEEEccCCCCCccccccccC
Q 042439 358 CRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCW-SLV-SFPE-VAL------PSKLRKIEICSCDALKSLPEAWMCD 428 (766)
Q Consensus 358 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~l~-~~~~-~~~------l~~L~~L~l~~~~~l~~~~~~~~~~ 428 (766)
++|++|++++|.+.+.+|..+.++++|++|++++|. ..+ .+|. ... +++|++|++++|... .+|..
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~---- 323 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVE---- 323 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCH----
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCch----
Confidence 566666666666666666666666666666666665 222 2432 111 256666666666533 44430
Q ss_pred cchhHHHHHHhccccCcCcccccCCceeEEEecCCCCcc-ccccCCCCccccccccccCCCCCcceeeecCCCchhhhHh
Q 042439 429 TNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLT-CIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAE 507 (766)
Q Consensus 429 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~ 507 (766)
..+..+++|++|++++|. ++ .+ + .+..+ ++|++|++++|... .+|.
T Consensus 324 ------------------~~l~~l~~L~~L~L~~N~-l~g~i-p------~~~~l------~~L~~L~L~~N~l~-~lp~ 370 (636)
T 4eco_A 324 ------------------TSLQKMKKLGMLECLYNQ-LEGKL-P------AFGSE------IKLASLNLAYNQIT-EIPA 370 (636)
T ss_dssp ------------------HHHTTCTTCCEEECCSCC-CEEEC-C------CCEEE------EEESEEECCSSEEE-ECCT
T ss_pred ------------------hhhccCCCCCEEeCcCCc-Cccch-h------hhCCC------CCCCEEECCCCccc-cccH
Confidence 034568899999999874 33 33 3 22222 78999999998766 7888
Q ss_pred hcCCCCC-CCEEEeeeCCCCCcccccccCCC--CCCEEEecCCCCccccCCCCC-------CCCCcceEEeccCcCcccc
Q 042439 508 RLDNNTS-LETIDICYCGNLKNLPSGLHNLH--QLQEISIGRCGNLESFPEGGL-------PCAKLSKLRIHGCERLEAL 577 (766)
Q Consensus 508 ~~~~l~~-L~~L~l~~~~~l~~lp~~l~~l~--~L~~L~l~~~~~l~~l~~~~~-------~~~~L~~L~l~~~~~~~~~ 577 (766)
.+..+++ |++|++++|... .+|..+..++ +|++|++++|...+.+|..+. .+++|+.|++++|.+. .+
T Consensus 371 ~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~l 448 (636)
T 4eco_A 371 NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KF 448 (636)
T ss_dssp TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SC
T ss_pred hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cC
Confidence 8999999 999999999744 8888777654 899999999988777777666 6789999999999876 56
Q ss_pred Ccc-CCCCCCCCeeEecCCCCCCCCCCCC-C--------CCCcceeEeccccccchhhhhcccccC--CCCCCcEEEEec
Q 042439 578 PKG-LHNLTSLQELTIGRGVELPSLEEDG-L--------PTNLHSLWIAGNMEIWKSTIEWGRGFH--RFSSLRQLRISG 645 (766)
Q Consensus 578 p~~-~~~l~~L~~L~l~~~~~l~~~~~~~-~--------~~~L~~L~l~~N~~~l~~~~~~~~~~~--~l~~L~~L~l~~ 645 (766)
|.. +..+++|++|++++|... .++... . +++|++|++++|.. . .+|..+. .+++|++|++++
T Consensus 449 p~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l--~---~lp~~~~~~~l~~L~~L~Ls~ 522 (636)
T 4eco_A 449 PKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKL--T---KLSDDFRATTLPYLVGIDLSY 522 (636)
T ss_dssp CTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCC--C---BCCGGGSTTTCTTCCEEECCS
T ss_pred CHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcC--C---ccChhhhhccCCCcCEEECCC
Confidence 654 456899999999999654 444321 1 22899999999622 2 3455565 999999999999
Q ss_pred cCCCCccCCCCcccccccCCCCCccccceEEecc------CCCCccchhhhccCCCcceeecccCcCcccCCCCCccccc
Q 042439 646 CDDDMVSFPPKADDIRLGTALPLPASLTSLLIFS------FPNLERLSSSIVDLQNLTELYLEDCPKLKYFPEKGLPSSL 719 (766)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L 719 (766)
| .+..+|..+ ..+++|+.|++++ +...+.+|..+..+++|++|++++|+ ++.+|.. +.++|
T Consensus 523 N--~l~~ip~~~---------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~~~~L 589 (636)
T 4eco_A 523 N--SFSKFPTQP---------LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-ITPNI 589 (636)
T ss_dssp S--CCSSCCCGG---------GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCTTC
T ss_pred C--CCCCcChhh---------hcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh-HhCcC
Confidence 7 455688776 3678999999954 33456788899999999999999975 5888875 44899
Q ss_pred ceeeecCChhH
Q 042439 720 LQLYIGGCPLI 730 (766)
Q Consensus 720 ~~L~i~~~~~l 730 (766)
++|++++|+..
T Consensus 590 ~~L~Ls~N~l~ 600 (636)
T 4eco_A 590 SVLDIKDNPNI 600 (636)
T ss_dssp CEEECCSCTTC
T ss_pred CEEECcCCCCc
Confidence 99999999753
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1e-28 Score=277.25 Aligned_cols=404 Identities=13% Similarity=0.061 Sum_probs=183.7
Q ss_pred ceEEEEecCCCCCCccccCCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeecCCCCceecCcccccCCCCCCCCCcc
Q 042439 101 EQFCISGYGGTKFPAWLGDSSLPNLVTLKFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCLE 179 (766)
Q Consensus 101 ~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~ 179 (766)
++++++++.+..+|..+ .++|++|++++|.+.+..+ .++++++|++|++++|. ++.+....++. +++|+
T Consensus 34 ~~l~ls~~~L~~ip~~~----~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~-----l~~L~ 103 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL----PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLF-----NQDLE 103 (562)
T ss_dssp CEEECTTSCCCSCCTTS----CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTT-----CTTCC
T ss_pred cEEEcCCCCCccCCCCC----CCCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCC-----CCCCC
Confidence 55555555555555543 2555566666555433332 35555566666665542 33332221111 55566
Q ss_pred EEeccCccchhhhhccCCCccccccCcccceecccccccccC-CCC---CCCCCccEEEEecCCCcccccCCCCcc--ce
Q 042439 180 TLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKG-PFP---EHLPALEMLVIEGCEELSVSVSSLPAL--CK 253 (766)
Q Consensus 180 ~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~p---~~l~~L~~L~l~~~~~l~~~~~~~~~L--~~ 253 (766)
+|++++|... . ++.. .+++|++|++++|. +++ .+| ..+++|++|++++|..-...+..+++| +.
T Consensus 104 ~L~Ls~N~l~-~------lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~ 173 (562)
T 3a79_B 104 YLDVSHNRLQ-N------ISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSC 173 (562)
T ss_dssp EEECTTSCCC-E------ECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEE
T ss_pred EEECCCCcCC-c------cCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeE
Confidence 6666555432 1 2222 45556666665553 331 122 134555566665554332333334444 66
Q ss_pred EEEcCCCCceeeccccccCCCCceeeccCCccccccCCCCCCCCCcc--EEEecccCCccchhcccCccccCCCCCCEEE
Q 042439 254 LQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLKPQLPKLE--ELEINDMKEHTYIWKSHNGLLQDSCSLKRLT 331 (766)
Q Consensus 254 L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~--~L~~~~l~~~~~~~~~~~~~~~~~~~L~~L~ 331 (766)
|++++|.... .+..|..+..+. .+.+ +++.+......+...+..+++|+.++
T Consensus 174 L~L~~n~l~~-------------------------~~~~~~~l~~l~~~~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~ 227 (562)
T 3a79_B 174 ILLDLVSYHI-------------------------KGGETESLQIPNTTVLHL-VFHPNSLFSVQVNMSVNALGHLQLSN 227 (562)
T ss_dssp EEEEESSCCC-------------------------CSSSCCEEEECCEEEEEE-EECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred EEeecccccc-------------------------cccCcccccccCcceEEE-EecCccchhhhhhhcccccceEEEec
Confidence 6666665310 111222233222 3322 33333332223333344556666666
Q ss_pred EccCCC-ccccchhhhHHHHhhhhhccCcccEEEeecCCCCcc----cCcccCCCCCccEEEecCCCCCcccCCC-----
Q 042439 332 IASCPK-LQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVK----LPQSSLSLSSLREIEIYGCWSLVSFPEV----- 401 (766)
Q Consensus 332 l~~~~~-l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~l~~~~~~----- 401 (766)
++++.. ...+. .....+ ...++|+.++++++...+. ++..+ ..++|++|++++|...+.+|..
T Consensus 228 l~~n~~~~~~l~-----~~~~~l-~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~ 300 (562)
T 3a79_B 228 IKLNDENCQRLM-----TFLSEL-TRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYS 300 (562)
T ss_dssp EECCSTTHHHHH-----HHHHHH-HSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCC
T ss_pred ccccccccchHH-----HHHHHH-hccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcc
Confidence 665421 01110 111111 1125566666665543321 11111 2346666666666544444432
Q ss_pred -CCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccc
Q 042439 402 -ALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLE 480 (766)
Q Consensus 402 -~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 480 (766)
..++.|+.+++..+.. .+|..+.. .+....+|++|+++++. +..+ .++
T Consensus 301 ~~~L~~L~~~~~~~~~~--~~p~~~~~--------------------~~~~~~~L~~L~l~~n~-~~~~----~~~---- 349 (562)
T 3a79_B 301 ETALKSLMIEHVKNQVF--LFSKEALY--------------------SVFAEMNIKMLSISDTP-FIHM----VCP---- 349 (562)
T ss_dssp SCSCCEEEEEEEEECCC--SSCHHHHH--------------------HHHHTCCCSEEEEESSC-CCCC----CCC----
T ss_pred cccchheehhhccccee--ecChhhhh--------------------hhhccCcceEEEccCCC-cccc----cCc----
Confidence 2233333333333332 22221000 00012356667776653 1111 000
Q ss_pred cccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCC--cccccccCCCCCCEEEecCCCCccccCCC-C
Q 042439 481 SLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLK--NLPSGLHNLHQLQEISIGRCGNLESFPEG-G 557 (766)
Q Consensus 481 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~l~~~~~l~~l~~~-~ 557 (766)
..+++|++|++++|...+.+|..++.+++|+.|++++|...+ .+|..+..+++|++|++++|.....+|.. +
T Consensus 350 -----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 350 -----PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp -----SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred -----cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 012556666666666655556666666666666666664332 22344556666666666666444335442 3
Q ss_pred CCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCC
Q 042439 558 LPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRG 595 (766)
Q Consensus 558 ~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 595 (766)
..+++|++|++++|.+.+.+|..+. ++|++|++++|
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N 460 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN 460 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS
T ss_pred cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC
Confidence 4455666666666665554443332 45555555555
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1e-29 Score=292.60 Aligned_cols=313 Identities=15% Similarity=0.126 Sum_probs=226.7
Q ss_pred CcccEEEeecCCCCcccCcccCCCCCccEEEecCCC-CCc-ccC--------CCCCCCCcceEEEccCCCCCcccccccc
Q 042439 358 CRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCW-SLV-SFP--------EVALPSKLRKIEICSCDALKSLPEAWMC 427 (766)
Q Consensus 358 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~l~-~~~--------~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 427 (766)
++|++|+|++|.+.+.+|..+.++++|++|++++|+ ..+ .+| ....+++|++|++++|... .+|..
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~--- 566 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS--- 566 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH---
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh---
Confidence 667777777777667777777777777777777775 222 233 1223557777777776643 55440
Q ss_pred CcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHh
Q 042439 428 DTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAE 507 (766)
Q Consensus 428 ~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~ 507 (766)
..+..+++|+.|++++|. +..+ + .+ ..+ ++|++|++++|... .+|.
T Consensus 567 -------------------~~l~~L~~L~~L~Ls~N~-l~~l-p--~~----~~L------~~L~~L~Ls~N~l~-~lp~ 612 (876)
T 4ecn_A 567 -------------------ASLQKMVKLGLLDCVHNK-VRHL-E--AF----GTN------VKLTDLKLDYNQIE-EIPE 612 (876)
T ss_dssp -------------------HHHTTCTTCCEEECTTSC-CCBC-C--CC----CTT------SEESEEECCSSCCS-CCCT
T ss_pred -------------------hhhhcCCCCCEEECCCCC-cccc-h--hh----cCC------CcceEEECcCCccc-cchH
Confidence 024568899999999874 3333 2 22 222 78999999999877 7888
Q ss_pred hcCCCCC-CCEEEeeeCCCCCcccccccCCCC--CCEEEecCCCCccccCCC---C--CCCCCcceEEeccCcCccccCc
Q 042439 508 RLDNNTS-LETIDICYCGNLKNLPSGLHNLHQ--LQEISIGRCGNLESFPEG---G--LPCAKLSKLRIHGCERLEALPK 579 (766)
Q Consensus 508 ~~~~l~~-L~~L~l~~~~~l~~lp~~l~~l~~--L~~L~l~~~~~l~~l~~~---~--~~~~~L~~L~l~~~~~~~~~p~ 579 (766)
.+..+++ |+.|++++|.. ..+|..+..++. |+.|++++|...+.+|.. . ..+++|+.|++++|.+. .+|.
T Consensus 613 ~l~~l~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~ 690 (876)
T 4ecn_A 613 DFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPT 690 (876)
T ss_dssp TSCEECTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCH
T ss_pred HHhhccccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCH
Confidence 8888998 99999999874 478877776654 999999999766555432 1 23458999999999876 6666
Q ss_pred cC-CCCCCCCeeEecCCCCCCCCCCC-C--------CCCCcceeEeccccccchhhhhcccccC--CCCCCcEEEEeccC
Q 042439 580 GL-HNLTSLQELTIGRGVELPSLEED-G--------LPTNLHSLWIAGNMEIWKSTIEWGRGFH--RFSSLRQLRISGCD 647 (766)
Q Consensus 580 ~~-~~l~~L~~L~l~~~~~l~~~~~~-~--------~~~~L~~L~l~~N~~~l~~~~~~~~~~~--~l~~L~~L~l~~~~ 647 (766)
.+ ..+++|+.|++++|... .++.. . .+++|++|++++|. +. .+|..+. .+++|+.|++++|
T Consensus 691 ~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~--L~---~lp~~l~~~~l~~L~~L~Ls~N- 763 (876)
T 4ecn_A 691 ELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK--LT---SLSDDFRATTLPYLSNMDVSYN- 763 (876)
T ss_dssp HHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC--CC---CCCGGGSTTTCTTCCEEECCSS-
T ss_pred HHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC--Cc---cchHHhhhccCCCcCEEEeCCC-
Confidence 55 47899999999998544 44432 1 12389999999962 22 3455565 8999999999997
Q ss_pred CCCccCCCCcccccccCCCCCccccceEEecc------CCCCccchhhhccCCCcceeecccCcCcccCCCCCcccccce
Q 042439 648 DDMVSFPPKADDIRLGTALPLPASLTSLLIFS------FPNLERLSSSIVDLQNLTELYLEDCPKLKYFPEKGLPSSLLQ 721 (766)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 721 (766)
.+..+|..+ ..+++|+.|++++ +.-...+|..+..+++|++|++++|+ ++.+|.. +.++|+.
T Consensus 764 -~L~~lp~~l---------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~-l~~~L~~ 831 (876)
T 4ecn_A 764 -CFSSFPTQP---------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK-LTPQLYI 831 (876)
T ss_dssp -CCSSCCCGG---------GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CCSSSCE
T ss_pred -CCCccchhh---------hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHh-hcCCCCE
Confidence 455688766 3678999999976 33456788899999999999999975 4888875 4579999
Q ss_pred eeecCChh
Q 042439 722 LYIGGCPL 729 (766)
Q Consensus 722 L~i~~~~~ 729 (766)
|++++|+.
T Consensus 832 LdLs~N~l 839 (876)
T 4ecn_A 832 LDIADNPN 839 (876)
T ss_dssp EECCSCTT
T ss_pred EECCCCCC
Confidence 99999975
No 22
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=2e-29 Score=273.19 Aligned_cols=421 Identities=21% Similarity=0.203 Sum_probs=207.8
Q ss_pred CCCcceEEEEecCCCCCCccccCCCCCCeeEEEEecCCCCCCCCC-CCCcCcccceeecCCCCceecCcccccCCCCCCC
Q 042439 97 HEILEQFCISGYGGTKFPAWLGDSSLPNLVTLKFENCDMCTALPS-VGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPF 175 (766)
Q Consensus 97 ~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 175 (766)
.++|++|+++++.+..+|..+ ..+++|++|++++|.+.+.+|. ++.+++|+.+++++|. .
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i--~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-----------------~ 70 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEA--ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-----------------D 70 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-----------------H
T ss_pred cccchhhhcccCchhhCChhH--hcccchhhhhccCCcccccCCcccccchhcchhhhhhhh-----------------c
Confidence 357888888888777888777 4688888888888877666664 7888888777776653 3
Q ss_pred CCccEEeccCccchhhhhccCCCccccccCcccceecccccccccCCCCCCCCCccEEEEecCCCcccccCCC-CccceE
Q 042439 176 PCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKGPFPEHLPALEMLVIEGCEELSVSVSSL-PALCKL 254 (766)
Q Consensus 176 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~-~~L~~L 254 (766)
.++++|++++|... . ++. ..++|++|++++| .++ .+|..+++|+.|++++|.... ++.. ++|++|
T Consensus 71 ~~l~~L~l~~~~l~-~------lp~---~~~~L~~L~l~~n-~l~-~lp~~~~~L~~L~l~~n~l~~--l~~~~~~L~~L 136 (454)
T 1jl5_A 71 RQAHELELNNLGLS-S------LPE---LPPHLESLVASCN-SLT-ELPELPQSLKSLLVDNNNLKA--LSDLPPLLEYL 136 (454)
T ss_dssp HTCSEEECTTSCCS-C------CCS---CCTTCSEEECCSS-CCS-SCCCCCTTCCEEECCSSCCSC--CCSCCTTCCEE
T ss_pred cCCCEEEecCCccc-c------CCC---CcCCCCEEEccCC-cCC-ccccccCCCcEEECCCCccCc--ccCCCCCCCEE
Confidence 45677777777521 1 121 2367777777666 366 366666666666666654221 2222 456666
Q ss_pred EEcCCCCceeeccccccCCCCceeeccCCccccccCCCCCCCCCccEEEecccCCccchhcccCccccCCCCCCEEEEcc
Q 042439 255 QIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLKPQLPKLEELEINDMKEHTYIWKSHNGLLQDSCSLKRLTIAS 334 (766)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 334 (766)
++++|.... ++ .+..+++|++|++++
T Consensus 137 ~L~~n~l~~----------------------------------------------------lp--~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 137 GVSNNQLEK----------------------------------------------------LP--ELQNSSFLKIIDVDN 162 (454)
T ss_dssp ECCSSCCSS----------------------------------------------------CC--CCTTCTTCCEEECCS
T ss_pred ECcCCCCCC----------------------------------------------------Cc--ccCCCCCCCEEECCC
Confidence 666554211 12 256677777787777
Q ss_pred CCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCCCCCCCCcceEEEcc
Q 042439 335 CPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPEVALPSKLRKIEICS 414 (766)
Q Consensus 335 ~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~l~~ 414 (766)
+ .++.++.. +++|++|++++|.+.+ +| .+..+++|++|++++|... .+|. .+++|++|++++
T Consensus 163 N-~l~~lp~~------------~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~--~~~~L~~L~l~~ 224 (454)
T 1jl5_A 163 N-SLKKLPDL------------PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPD--LPLSLESIVAGN 224 (454)
T ss_dssp S-CCSCCCCC------------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCC--CCTTCCEEECCS
T ss_pred C-cCcccCCC------------cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCC--CcCcccEEECcC
Confidence 5 35444322 2578888888887544 56 5788888888888888543 3443 246888888888
Q ss_pred CCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCccee
Q 042439 415 CDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSL 494 (766)
Q Consensus 415 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L 494 (766)
|. +..+|. +..+++|++|+++++ .++.+ +. .+++|++|
T Consensus 225 n~-l~~lp~-------------------------~~~l~~L~~L~l~~N-~l~~l------~~---------~~~~L~~L 262 (454)
T 1jl5_A 225 NI-LEELPE-------------------------LQNLPFLTTIYADNN-LLKTL------PD---------LPPSLEAL 262 (454)
T ss_dssp SC-CSSCCC-------------------------CTTCTTCCEEECCSS-CCSSC------CS---------CCTTCCEE
T ss_pred Cc-CCcccc-------------------------cCCCCCCCEEECCCC-cCCcc------cc---------cccccCEE
Confidence 75 335542 134667888888775 23322 11 12567777
Q ss_pred eecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCc
Q 042439 495 HVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERL 574 (766)
Q Consensus 495 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~ 574 (766)
++++|...+ +|.. +++|+.|++++|.. ..+|.. .++|++|++++|.. ..++.. .++|+.|++++|.+.
T Consensus 263 ~l~~N~l~~-l~~~---~~~L~~L~ls~N~l-~~l~~~---~~~L~~L~l~~N~l-~~i~~~---~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 263 NVRDNYLTD-LPEL---PQSLTFLDVSENIF-SGLSEL---PPNLYYLNASSNEI-RSLCDL---PPSLEELNVSNNKLI 330 (454)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCC-SEESCC---CTTCCEEECCSSCC-SEECCC---CTTCCEEECCSSCCS
T ss_pred ECCCCcccc-cCcc---cCcCCEEECcCCcc-CcccCc---CCcCCEEECcCCcC-CcccCC---cCcCCEEECCCCccc
Confidence 777776543 3332 36777888877753 333321 25777788877743 334321 147777888777755
Q ss_pred cccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCC
Q 042439 575 EALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFP 654 (766)
Q Consensus 575 ~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 654 (766)
+ +|.. +++|++|++++|. ++.++. .+++|++|++++|. +...+.+|. .+..|. .|. ....+|
T Consensus 331 ~-lp~~---~~~L~~L~L~~N~-l~~lp~--~l~~L~~L~L~~N~--l~~l~~ip~------~l~~L~--~n~-~~~~i~ 392 (454)
T 1jl5_A 331 E-LPAL---PPRLERLIASFNH-LAEVPE--LPQNLKQLHVEYNP--LREFPDIPE------SVEDLR--MNS-HLAEVP 392 (454)
T ss_dssp C-CCCC---CTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC--CSSCCCCCT------TCCEEE--CCC-------
T ss_pred c-cccc---CCcCCEEECCCCc-cccccc--hhhhccEEECCCCC--CCcCCCChH------HHHhhh--hcc-cccccc
Confidence 4 5543 4677777777774 334554 46777777777751 111112222 222222 211 222333
Q ss_pred CCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccC
Q 042439 655 PKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYF 710 (766)
Q Consensus 655 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 710 (766)
. .+++|+.|++++ +.+..+|. +. ++++.|.+.+|.....+
T Consensus 393 ~------------~~~~L~~L~ls~-N~l~~~~~-iP--~sl~~L~~~~~~~~~~~ 432 (454)
T 1jl5_A 393 E------------LPQNLKQLHVET-NPLREFPD-IP--ESVEDLRMNSERVVDPY 432 (454)
T ss_dssp --------------------------------------------------------
T ss_pred c------------ccCcCCEEECCC-CcCCcccc-ch--hhHhheeCcCcccCCcc
Confidence 2 346788888888 45554331 11 45667777776544433
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=9.5e-28 Score=274.85 Aligned_cols=223 Identities=20% Similarity=0.143 Sum_probs=135.7
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCC--cccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceE
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLK--NLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKL 566 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 566 (766)
+.|+.+.+..+...... ....+++|+.|++++|.... ..+.....+.+|++|++..+. ...++..+..+++|+.+
T Consensus 349 ~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l 425 (635)
T 4g8a_A 349 KSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHL 425 (635)
T ss_dssp TTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEE
T ss_pred hhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccch
Confidence 34555555544432211 12346667777776664322 223444556677777777663 34445556666777777
Q ss_pred EeccCcCccccC-ccCCCCCCCCeeEecCCCCCCCCCC-CCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEe
Q 042439 567 RIHGCERLEALP-KGLHNLTSLQELTIGRGVELPSLEE-DGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRIS 644 (766)
Q Consensus 567 ~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~ 644 (766)
++.++......+ ..+..+++++.+++++|......+. ...+++|+.|++++|. ... ...|..+..+++|++|+++
T Consensus 426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~-~~~--~~~~~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQE--NFLPDIFTELRNLTFLDLS 502 (635)
T ss_dssp ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGG--GEECSCCTTCTTCCEEECT
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcc-ccc--ccCchhhhhccccCEEECC
Confidence 777666554443 3456677777777777654333332 2456777777777742 111 1123347788888888888
Q ss_pred ccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcCcccCCCCCc---ccccc
Q 042439 645 GCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPKLKYFPEKGL---PSSLL 720 (766)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~ 720 (766)
+| .+..+++.. +..+++|++|++++ ++++.++. .+..+++|++|++++| +++.+++..+ +++|+
T Consensus 503 ~N--~L~~l~~~~--------f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 503 QC--QLEQLSPTA--------FNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp TS--CCCEECTTT--------TTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCC
T ss_pred CC--ccCCcChHH--------HcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCC
Confidence 86 455554322 24677888888888 57777765 6778888888888885 5566655332 46888
Q ss_pred eeeecCChh
Q 042439 721 QLYIGGCPL 729 (766)
Q Consensus 721 ~L~i~~~~~ 729 (766)
+|++++||-
T Consensus 571 ~L~L~~Np~ 579 (635)
T 4g8a_A 571 FLNLTQNDF 579 (635)
T ss_dssp EEECTTCCB
T ss_pred EEEeeCCCC
Confidence 888887653
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.7e-28 Score=265.82 Aligned_cols=198 Identities=27% Similarity=0.257 Sum_probs=77.5
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEe
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRI 568 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 568 (766)
++|++|++++|... .+|. ++.+++|++|++++|. +..+|.. +++|++|++++|. +..+|.. +++|+.|++
T Consensus 215 ~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~l 284 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNL-LKTLPDL---PPSLEALNVRDNY-LTDLPEL---PQSLTFLDV 284 (454)
T ss_dssp TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSC-CSSCCSC---CTTCCEEECCSSC-CSCCCCC---CTTCCEEEC
T ss_pred CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCc-CCccccc---ccccCEEECCCCc-ccccCcc---cCcCCEEEC
Confidence 34556666555443 4442 5556666666666654 2233322 3556666666653 3334432 245666666
Q ss_pred ccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCC
Q 042439 569 HGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDD 648 (766)
Q Consensus 569 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 648 (766)
++|.+.+ +|.. .++|++|++++|... .++ ..+++|++|++++|. +. .+|. .+++|++|++++|
T Consensus 285 s~N~l~~-l~~~---~~~L~~L~l~~N~l~-~i~--~~~~~L~~L~Ls~N~--l~---~lp~---~~~~L~~L~L~~N-- 347 (454)
T 1jl5_A 285 SENIFSG-LSEL---PPNLYYLNASSNEIR-SLC--DLPPSLEELNVSNNK--LI---ELPA---LPPRLERLIASFN-- 347 (454)
T ss_dssp CSSCCSE-ESCC---CTTCCEEECCSSCCS-EEC--CCCTTCCEEECCSSC--CS---CCCC---CCTTCCEEECCSS--
T ss_pred cCCccCc-ccCc---CCcCCEEECcCCcCC-ccc--CCcCcCCEEECCCCc--cc---cccc---cCCcCCEEECCCC--
Confidence 6655433 2211 145566666655322 222 123456666666541 11 1221 1355666666654
Q ss_pred CCccCCCCcccccccCCCCCccccceEEeccCCCCcc---chhhhccC-------------CCcceeecccCcCcccCCC
Q 042439 649 DMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLER---LSSSIVDL-------------QNLTELYLEDCPKLKYFPE 712 (766)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---l~~~~~~l-------------~~L~~L~l~~c~~l~~l~~ 712 (766)
.+..+|. .+++|++|+++++ .+.. +|.++..+ ++|++|++++|+ ++.+|.
T Consensus 348 ~l~~lp~------------~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~ 413 (454)
T 1jl5_A 348 HLAEVPE------------LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPD 413 (454)
T ss_dssp CCSCCCC------------CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC----------------------------
T ss_pred ccccccc------------hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCcccc
Confidence 2334443 1345666666653 3333 33344443 788999999854 454443
Q ss_pred CCcccccceeeecCChh
Q 042439 713 KGLPSSLLQLYIGGCPL 729 (766)
Q Consensus 713 ~~~~~~L~~L~i~~~~~ 729 (766)
+|++++.|.+.+|..
T Consensus 414 --iP~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 414 --IPESVEDLRMNSERV 428 (454)
T ss_dssp -----------------
T ss_pred --chhhHhheeCcCccc
Confidence 466788888887753
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=8.8e-27 Score=261.59 Aligned_cols=427 Identities=15% Similarity=0.067 Sum_probs=283.0
Q ss_pred CCcceEEEEecCCCCCCc-cccCCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeecCCCCceecCcccccCCCCCCC
Q 042439 98 EILEQFCISGYGGTKFPA-WLGDSSLPNLVTLKFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPF 175 (766)
Q Consensus 98 ~~L~~L~l~~~~~~~lp~-~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 175 (766)
++|++|++++|.+..+|. .+ ..+++|++|+|++|.+.+..| .++++++|++|++++|. ++.++.. + +
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~------l 120 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDI--SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--P------M 120 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGT--TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--C------C
T ss_pred CCcCEEECCCCCccccChhhh--ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--c------c
Confidence 688888888888777763 44 468888888888887655545 37888888888888754 5555543 2 7
Q ss_pred CCccEEeccCccchhhhhccCCCccccccCcccceecccccccccCCCCCCCCCc--cEEEEecCCC--cccccCCCCcc
Q 042439 176 PCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKGPFPEHLPAL--EMLVIEGCEE--LSVSVSSLPAL 251 (766)
Q Consensus 176 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L--~~L~l~~~~~--l~~~~~~~~~L 251 (766)
++|++|++++|.... .. .+..+..+++|++|++++|. +++.-...+++| +.|++++|.. .......++.+
T Consensus 121 ~~L~~L~Ls~N~l~~-l~----~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 121 ASLRHLDLSFNDFDV-LP----VCKEFGNLTKLTFLGLSAAK-FRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp TTCSEEECCSSCCSB-CC----CCGGGGGCTTCCEEEEECSB-CCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred ccCCEEECCCCCccc-cC----chHhhcccCcccEEecCCCc-cccCchhhhhhceeeEEEeecccccccccCccccccc
Confidence 888888888887432 11 33567778888888887764 543222344555 8888888764 22111112222
Q ss_pred c----eEEEcCCCCceeeccccccCCCCceeeccCCccccccCCCC-CCCCCccEEEecccCCccch---hcccCccccC
Q 042439 252 C----KLQIGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLK-PQLPKLEELEINDMKEHTYI---WKSHNGLLQD 323 (766)
Q Consensus 252 ~----~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~L~~L~~~~l~~~~~~---~~~~~~~~~~ 323 (766)
. .++++++.... .++ ..+.++..|+..+++.+... .......+..
T Consensus 195 ~~~~l~l~l~~n~~~~---------------------------~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~ 247 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFS---------------------------VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR 247 (562)
T ss_dssp CEEEEEEEECSSSCCC---------------------------CCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHS
T ss_pred CcceEEEEecCccchh---------------------------hhhhhcccccceEEEecccccccccchHHHHHHHHhc
Confidence 1 33444444221 111 13456667777666665310 0011234677
Q ss_pred CCCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCccc-----CCCCCccEEEecCCCCCccc
Q 042439 324 SCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSS-----LSLSSLREIEIYGCWSLVSF 398 (766)
Q Consensus 324 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~-----~~l~~L~~L~L~~~~~l~~~ 398 (766)
++.|+.|++.++. +.... ....... ...++|++|++++|.+.+.+|..+ ..++.|+.+++..+.. .+
T Consensus 248 l~~L~~L~L~~~~-l~~~~---~~~~~~~--~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~ 319 (562)
T 3a79_B 248 GPTLLNVTLQHIE-TTWKC---SVKLFQF--FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LF 319 (562)
T ss_dssp CSSCEEEEEEEEE-ECHHH---HHHHHHH--HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SS
T ss_pred cCcceEEEecCCc-CcHHH---HHHHHHh--hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ec
Confidence 8899999998753 22111 1111111 122599999999999887888776 6677777777777643 33
Q ss_pred CCCC-----CCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCC
Q 042439 399 PEVA-----LPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKN 473 (766)
Q Consensus 399 ~~~~-----~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 473 (766)
|... ...+|++|++++|....... ...+++|++|+++++. ++..
T Consensus 320 p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--------------------------~~~l~~L~~L~l~~n~-l~~~---- 368 (562)
T 3a79_B 320 SKEALYSVFAEMNIKMLSISDTPFIHMVC--------------------------PPSPSSFTFLNFTQNV-FTDS---- 368 (562)
T ss_dssp CHHHHHHHHHTCCCSEEEEESSCCCCCCC--------------------------CSSCCCCCEEECCSSC-CCTT----
T ss_pred ChhhhhhhhccCcceEEEccCCCcccccC--------------------------ccCCCCceEEECCCCc-cccc----
Confidence 3110 12579999999987432211 0237789999999974 3322
Q ss_pred CCccccccccccCCCCCcceeeecCCCchh--hhHhhcCCCCCCCEEEeeeCCCCCccccc-ccCCCCCCEEEecCCCCc
Q 042439 474 ELPATLESLEVGNLPPSLKSLHVLSCSKLE--SIAERLDNNTSLETIDICYCGNLKNLPSG-LHNLHQLQEISIGRCGNL 550 (766)
Q Consensus 474 ~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~l~~~~~l 550 (766)
.+..+..+ ++|++|++++|.... .+|..+..+++|+.|++++|...+.+|.. +..+++|++|++++|...
T Consensus 369 -~~~~~~~l------~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 369 -VFQGCSTL------KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441 (562)
T ss_dssp -TTTTCCSC------SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred -hhhhhccc------CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC
Confidence 22222222 789999999998766 66788999999999999999866656654 678999999999999776
Q ss_pred cccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCC--CCCCCCcceeEeccc
Q 042439 551 ESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEE--DGLPTNLHSLWIAGN 618 (766)
Q Consensus 551 ~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~N 618 (766)
+.+|..+. ++|+.|++++|.+. .+|..+..+++|++|++++|... .++. ...+++|+.|++++|
T Consensus 442 ~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 442 GSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp GGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSC
T ss_pred cchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCC
Confidence 76666443 69999999999754 78888889999999999998544 4443 456677777777776
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=5.6e-27 Score=268.46 Aligned_cols=507 Identities=15% Similarity=0.082 Sum_probs=290.2
Q ss_pred cCCceeEecCCCCcCChhhhhhhccCCCCCCCceEEEecCCCCCCCccchhhHHHHhhcCCCCCCcceEEEEecCCCCCC
Q 042439 35 HLHGTLNISKLENVKCVGDAKEAQLDGKKNLRELLLRWALNTDGSSSREAKTENDVLDMLKPHEILEQFCISGYGGTKFP 114 (766)
Q Consensus 35 ~L~g~L~l~~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~lp 114 (766)
.++ .|++++ +......+.+|+++++|++|+|++|... .. ....|..+++|++|+|++|.+..+|
T Consensus 53 ~~~-~LdLs~----N~i~~l~~~~f~~l~~L~~L~Ls~N~i~--------~i---~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 53 STK-NLDLSF----NPLRHLGSYSFFSFPELQVLDLSRCEIQ--------TI---EDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TCC-EEECTT----SCCCEECTTTTTTCTTCCEEECTTCCCC--------EE---CTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCC-EEEeeC----CCCCCCCHHHHhCCCCCCEEECCCCcCC--------Cc---ChhHhcCCCCCCEEEccCCcCCCCC
Confidence 455 666654 2244555567888888888888765431 11 1235666778888888888777776
Q ss_pred ccccCCCCCCeeEEEEecCCCCCCCC-CCCCcCcccceeecCCCCceecC-cccccCCCCCCCCCccEEeccCccchhhh
Q 042439 115 AWLGDSSLPNLVTLKFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLG-SEFYGNDPPIPFPCLETLIFENMREWEDW 192 (766)
Q Consensus 115 ~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 192 (766)
...+ ..+++|++|+|++|.+.+..+ .++++++|++|++++|. ++.+. ..+.+. +++|++|++++|.....
T Consensus 117 ~~~f-~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~-----l~~L~~L~L~~N~l~~~- 188 (635)
T 4g8a_A 117 LGAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSN-----LTNLEHLDLSSNKIQSI- 188 (635)
T ss_dssp GGGG-TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGG-----CTTCCEEECCSSCCCEE-
T ss_pred HHHh-cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhcc-----chhhhhhcccCcccccc-
Confidence 5332 467888888888887544333 37788888888887754 33221 122222 77888888887764221
Q ss_pred hccCCCccccccCcccc----eecccccccccCCCCCC--CCCccEEEEecCCCcc----cccCCCCccceEEEcCCCCc
Q 042439 193 ISHGSSQRVVEGFPKLR----ELHILRCSKLKGPFPEH--LPALEMLVIEGCEELS----VSVSSLPALCKLQIGGCKKV 262 (766)
Q Consensus 193 ~~~~~~~~~~~~l~~L~----~L~l~~c~~l~~~~p~~--l~~L~~L~l~~~~~l~----~~~~~~~~L~~L~l~~~~~~ 262 (766)
.+..+..+.+++ .++++.+. +...-+.. ...++.+++.++.... ..+..++.++...+......
T Consensus 189 -----~~~~l~~L~~l~~~~~~~~ls~n~-l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~ 262 (635)
T 4g8a_A 189 -----YCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 262 (635)
T ss_dssp -----CGGGGHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred -----ccccccchhhhhhhhhhhhcccCc-ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccc
Confidence 122233333332 34444442 33111121 2344556666554211 13334555554444322211
Q ss_pred eeeccccccCCCCceeeccCCccccccCCCCCCCCCccEEEecccCCccc--hhcccCccccCCCCCCEEEEccCCCccc
Q 042439 263 VWESATGHLGSQNSVVCRDASNQVFLAGPLKPQLPKLEELEINDMKEHTY--IWKSHNGLLQDSCSLKRLTIASCPKLQS 340 (766)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 340 (766)
.... +.......+..+..+....+..... ........+..+.+++.+.+.++. +..
T Consensus 263 ~~~~---------------------l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~ 320 (635)
T 4g8a_A 263 NEGN---------------------LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IER 320 (635)
T ss_dssp TSCC---------------------CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EEE
T ss_pred cccc---------------------cccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-ccc
Confidence 1000 1111111222222222222111110 001122335556777888777653 222
Q ss_pred cchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCCCCCCCCcceEEEccCCCCCc
Q 042439 341 LVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPEVALPSKLRKIEICSCDALKS 420 (766)
Q Consensus 341 l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~ 420 (766)
+... ....+++.|++.+|.+....+ ..++.|+.+++.+|... ..+....+++|+.+++++|.....
T Consensus 321 ~~~~----------~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~-~~~~~~~l~~L~~L~ls~n~l~~~ 386 (635)
T 4g8a_A 321 VKDF----------SYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFK 386 (635)
T ss_dssp CGGG----------GSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSC-CBCCCCBCTTCCEEECCSSCCBEE
T ss_pred cccc----------ccchhhhhhhcccccccCcCc---ccchhhhhcccccccCC-CCcccccccccccchhhccccccc
Confidence 2111 123678888888887533222 35678888888887433 344445678888888888764322
Q ss_pred cccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCC
Q 042439 421 LPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCS 500 (766)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~ 500 (766)
... +..+....+|+.+++..+.... . + ..+.. .++|+.+++..+.
T Consensus 387 ~~~----------------------~~~~~~~~~L~~L~~~~~~~~~-~-~-~~~~~----------l~~L~~l~l~~~~ 431 (635)
T 4g8a_A 387 GCC----------------------SQSDFGTISLKYLDLSFNGVIT-M-S-SNFLG----------LEQLEHLDFQHSN 431 (635)
T ss_dssp EEC----------------------CHHHHSCSCCCEEECCSCSEEE-E-C-SCCTT----------CTTCCEEECTTSE
T ss_pred ccc----------------------ccchhhhhhhhhhhcccccccc-c-c-ccccc----------cccccchhhhhcc
Confidence 111 0112235577788777653221 1 1 11111 2678888888776
Q ss_pred chhhhH-hhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccc-cCCCCCCCCCcceEEeccCcCccccC
Q 042439 501 KLESIA-ERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLES-FPEGGLPCAKLSKLRIHGCERLEALP 578 (766)
Q Consensus 501 ~~~~~~-~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~L~~L~l~~~~~~~~~p 578 (766)
.....+ ..+..+++++.+++++|......+..+..+++|++|++++|..... .|..+..+++|++|++++|.+.+..|
T Consensus 432 ~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~ 511 (635)
T 4g8a_A 432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511 (635)
T ss_dssp EESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh
Confidence 655443 4567788888888888876666666777788888888888865543 55667778888888888888777777
Q ss_pred ccCCCCCCCCeeEecCCCCCCCCCC-CCCCCCcceeEeccccccchhhhhcccccCCC-CCCcEEEEecc
Q 042439 579 KGLHNLTSLQELTIGRGVELPSLEE-DGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRF-SSLRQLRISGC 646 (766)
Q Consensus 579 ~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l-~~L~~L~l~~~ 646 (766)
..+..+++|++|++++|......+. ...+++|++|++++|. .....+..+..+ ++|+.|++++|
T Consensus 512 ~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 512 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH----IMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp TTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC----CCBCCSSCTTCCCTTCCEEECTTC
T ss_pred HHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc----CCCCCHHHHHhhhCcCCEEEeeCC
Confidence 7888888888888888854333332 3567888888888862 222223346666 58899999886
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=2e-27 Score=260.16 Aligned_cols=129 Identities=14% Similarity=0.072 Sum_probs=58.1
Q ss_pred CcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEec
Q 042439 490 SLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIH 569 (766)
Q Consensus 490 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 569 (766)
+|++|++++|...+..|..+..+++|+.|++++|...+..|..+..+++|++|++++|...+..|..+..+++|++|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 34444444444444444444445555555555544333334444445555555555543322223333444455555555
Q ss_pred cCcCccccCccCCCCCCCCeeEecCCCCCCCCCC-CCCCCCcceeEeccc
Q 042439 570 GCERLEALPKGLHNLTSLQELTIGRGVELPSLEE-DGLPTNLHSLWIAGN 618 (766)
Q Consensus 570 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~N 618 (766)
+|.+.+..|..+..+++|++|++++|......+. ...+++|++|++++|
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 5544444444445555555555555432221111 133445555555543
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=3.5e-26 Score=250.24 Aligned_cols=131 Identities=17% Similarity=0.088 Sum_probs=96.4
Q ss_pred CCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeE
Q 042439 512 NTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELT 591 (766)
Q Consensus 512 l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 591 (766)
.++|+.|++++|...+..|..+..+++|++|++++|......|..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 46788888888876666677788888888888888866555566777788888888888887666677788888888888
Q ss_pred ecCCCCCCCCC-CCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEecc
Q 042439 592 IGRGVELPSLE-EDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGC 646 (766)
Q Consensus 592 l~~~~~l~~~~-~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~ 646 (766)
+++|......+ ....+++|++|++++|. +...+ +..+..+++|++|++++|
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~--~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQ--LKSVP--DGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSC--CSCCC--TTTTTTCTTCCEEECCSS
T ss_pred CCCCcccccChhhccccccccEEECCCCc--cccCC--HhHhccCCcccEEEccCC
Confidence 88886544433 34667888888888852 22111 122678888888888886
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.2e-24 Score=238.06 Aligned_cols=141 Identities=15% Similarity=0.214 Sum_probs=70.8
Q ss_pred CCcceEEEEecCCCCCCccccCCCCCCeeEEEEecCCCCCCCCCCCCcCcccceeecCCCCceecCcccccCCCCCCCCC
Q 042439 98 EILEQFCISGYGGTKFPAWLGDSSLPNLVTLKFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPC 177 (766)
Q Consensus 98 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 177 (766)
+++++|++.++.+..+|. + ..+++|++|++++|.+. .+++++++++|++|++++|. +..++. +. .+++
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~--~~l~~L~~L~Ls~n~l~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~------~l~~ 113 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-V--EYLNNLTQINFSNNQLT-DITPLKNLTKLVDILMNNNQ-IADITP-LA------NLTN 113 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-G--GGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSC-CCCCGG-GT------TCTT
T ss_pred ccccEEecCCCCCccCcc-h--hhhcCCCEEECCCCccC-CchhhhccccCCEEECCCCc-cccChh-hc------CCCC
Confidence 356666666666655554 2 24666666666666643 33336666666666666543 222221 11 1666
Q ss_pred ccEEeccCccchhhhhccCCCccccccCcccceecccccccccCCCC--CCCCCccEEEEecCCCcccccCCCCccceEE
Q 042439 178 LETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKGPFP--EHLPALEMLVIEGCEELSVSVSSLPALCKLQ 255 (766)
Q Consensus 178 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p--~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~ 255 (766)
|++|++++|.... .+ .+..+++|++|++++|. +. .++ ..+++|+.|++.++..-...+..+++|+.|+
T Consensus 114 L~~L~L~~n~l~~-------~~-~~~~l~~L~~L~l~~n~-l~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 114 LTGLTLFNNQITD-------ID-PLKNLTNLNRLELSSNT-IS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 183 (466)
T ss_dssp CCEEECCSSCCCC-------CG-GGTTCTTCSEEEEEEEE-EC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEE
T ss_pred CCEEECCCCCCCC-------Ch-HHcCCCCCCEEECCCCc-cC-CChhhccCCcccEeecCCcccCchhhccCCCCCEEE
Confidence 6666666654211 11 24556666666666653 33 222 2344444444433221112344455555555
Q ss_pred EcCCC
Q 042439 256 IGGCK 260 (766)
Q Consensus 256 l~~~~ 260 (766)
+++|.
T Consensus 184 l~~n~ 188 (466)
T 1o6v_A 184 ISSNK 188 (466)
T ss_dssp CCSSC
T ss_pred CcCCc
Confidence 55554
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.7e-25 Score=242.45 Aligned_cols=159 Identities=12% Similarity=0.100 Sum_probs=93.5
Q ss_pred CcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCCCCCCCCcceEEEccCCCCCccccccccCcchhHHHHH
Q 042439 358 CRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPEVALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILM 437 (766)
Q Consensus 358 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~ 437 (766)
++|++|++++|.+.+. | +..+++|+.|++++| +|+.+++++|...+.+|.
T Consensus 233 ~~L~~L~l~~N~l~~~-~--~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~~-------------- 282 (457)
T 3bz5_A 233 TQLTYFDCSVNPLTEL-D--VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQA-------------- 282 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEEC--------------
T ss_pred CCCCEEEeeCCcCCCc-C--HHHCCCCCEEeccCC-------------CCCEEECCCCccCCcccc--------------
Confidence 5666666666654332 2 334555666555543 345555666655554432
Q ss_pred HhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCE
Q 042439 438 EEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLET 517 (766)
Q Consensus 438 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 517 (766)
..+++|+.|++++|..+..+ +.. .++|+.|++++| ++|+.
T Consensus 283 ------------~~l~~L~~L~Ls~n~~l~~l-~~~--------------~~~L~~L~l~~~-------------~~L~~ 322 (457)
T 3bz5_A 283 ------------EGCRKIKELDVTHNTQLYLL-DCQ--------------AAGITELDLSQN-------------PKLVY 322 (457)
T ss_dssp ------------TTCTTCCCCCCTTCTTCCEE-ECT--------------TCCCSCCCCTTC-------------TTCCE
T ss_pred ------------cccccCCEEECCCCccccee-ccC--------------CCcceEechhhc-------------ccCCE
Confidence 23667888888888766655 311 144666665553 56888
Q ss_pred EEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCC
Q 042439 518 IDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVE 597 (766)
Q Consensus 518 L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 597 (766)
|++++|...+ ++ +..+++|++|++++|.. ..+ +.|..|++++|.+.+. ..+..|..+++++|..
T Consensus 323 L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l-~~l-------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l 386 (457)
T 3bz5_A 323 LYLNNTELTE-LD--VSHNTKLKSLSCVNAHI-QDF-------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSL 386 (457)
T ss_dssp EECTTCCCSC-CC--CTTCTTCSEEECCSSCC-CBC-------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBE
T ss_pred EECCCCcccc-cc--cccCCcCcEEECCCCCC-CCc-------cccccccccCCcEEec-----ceeeecCccccccCcE
Confidence 8888876444 43 77788888888888743 322 3566666666655443 2345566677777654
Q ss_pred CCCCC
Q 042439 598 LPSLE 602 (766)
Q Consensus 598 l~~~~ 602 (766)
...+|
T Consensus 387 ~g~ip 391 (457)
T 3bz5_A 387 TIAVS 391 (457)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 44443
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=3.5e-24 Score=234.34 Aligned_cols=322 Identities=16% Similarity=0.168 Sum_probs=152.6
Q ss_pred ccCCCCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCC
Q 042439 321 LQDSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPE 400 (766)
Q Consensus 321 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~ 400 (766)
+..+++|++|++++| .++.++. + ..+++|++|++++|.+.+..+ +.++++|++|++++|. ++.++.
T Consensus 64 ~~~l~~L~~L~Ls~n-~l~~~~~------~----~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~-l~~~~~ 129 (466)
T 1o6v_A 64 VEYLNNLTQINFSNN-QLTDITP------L----KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ-ITDIDP 129 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG------G----TTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG
T ss_pred hhhhcCCCEEECCCC-ccCCchh------h----hccccCCEEECCCCccccChh--hcCCCCCCEEECCCCC-CCCChH
Confidence 556677777777765 3444432 1 122677777777776543332 6677777777777763 333444
Q ss_pred CCCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccc
Q 042439 401 VALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLE 480 (766)
Q Consensus 401 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 480 (766)
...+++|++|++++|. +..++.. ..........+. +.... ...+..+++|++|++++|. +..+ + .+.
T Consensus 130 ~~~l~~L~~L~l~~n~-l~~~~~~-~~l~~L~~L~l~-~~~~~--~~~~~~l~~L~~L~l~~n~-l~~~------~-~l~ 196 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNT-ISDISAL-SGLTSLQQLSFG-NQVTD--LKPLANLTTLERLDISSNK-VSDI------S-VLA 196 (466)
T ss_dssp GTTCTTCSEEEEEEEE-ECCCGGG-TTCTTCSEEEEE-ESCCC--CGGGTTCTTCCEEECCSSC-CCCC------G-GGG
T ss_pred HcCCCCCCEEECCCCc-cCCChhh-ccCCcccEeecC-CcccC--chhhccCCCCCEEECcCCc-CCCC------h-hhc
Confidence 5556777777777665 2222211 000000000000 00000 0113345555555555542 2211 0 011
Q ss_pred cccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCC
Q 042439 481 SLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPC 560 (766)
Q Consensus 481 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 560 (766)
. .++|++|++++|......+ ++.+++|+.|++++|. +..++ .+..+++|++|++++|... .++. +..+
T Consensus 197 ~------l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~-~~~~-~~~l 264 (466)
T 1o6v_A 197 K------LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQIS-NLAP-LSGL 264 (466)
T ss_dssp G------CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCC-CCGG-GTTC
T ss_pred c------CCCCCEEEecCCccccccc--ccccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCccc-cchh-hhcC
Confidence 1 1455566665555444333 3445556666665554 22222 3455556666666655332 2222 4445
Q ss_pred CCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcE
Q 042439 561 AKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQ 640 (766)
Q Consensus 561 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~ 640 (766)
++|+.|++++|.+.+..+ +..+++|++|++++|. +..++....+++|++|++++| . +. ...+ +..+++|++
T Consensus 265 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n-~-l~--~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFN-N-IS--DISP--VSSLTKLQR 335 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSS-C-CS--CCGG--GGGCTTCCE
T ss_pred CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCC-c-CC--Cchh--hccCccCCE
Confidence 556666666555443222 4555566666665553 222333444555666666553 1 11 1111 445556666
Q ss_pred EEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccC
Q 042439 641 LRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDC 704 (766)
Q Consensus 641 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c 704 (766)
|++++| .+..++. +..+++|+.|++++| .+..++. +..+++|++|++++|
T Consensus 336 L~l~~n--~l~~~~~----------l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 336 LFFYNN--KVSDVSS----------LANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQ 385 (466)
T ss_dssp EECCSS--CCCCCGG----------GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCE
T ss_pred eECCCC--ccCCchh----------hccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCC
Confidence 666554 2222221 124455666666553 3443332 555556666666654
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2.3e-24 Score=226.57 Aligned_cols=213 Identities=19% Similarity=0.194 Sum_probs=132.6
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEe
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRI 568 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 568 (766)
++|++|++++|.....++. +..+++|++|++++|... .++. +..+++|++|++++|. +..++. +..+++|+.+++
T Consensus 132 ~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l 206 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTA 206 (347)
T ss_dssp TTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEEC
T ss_pred CceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCc-cccccc-ccCCCccceeec
Confidence 4455555555544433333 556666777777766433 3322 5666777777777663 334433 455667777777
Q ss_pred ccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCC
Q 042439 569 HGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDD 648 (766)
Q Consensus 569 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 648 (766)
++|...+..+ +..+++|++|++++|.. ..++....+++|++|++++| . +... ..+..+++|++|++++|
T Consensus 207 ~~n~l~~~~~--~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n-~-l~~~----~~~~~l~~L~~L~l~~n-- 275 (347)
T 4fmz_A 207 YVNQITDITP--VANMTRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTN-Q-ISDI----NAVKDLTKLKMLNVGSN-- 275 (347)
T ss_dssp CSSCCCCCGG--GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSS-C-CCCC----GGGTTCTTCCEEECCSS--
T ss_pred ccCCCCCCch--hhcCCcCCEEEccCCcc-CCCcchhcCCCCCEEECCCC-c-cCCC----hhHhcCCCcCEEEccCC--
Confidence 7766544332 56667777777777643 33333556677777777774 1 1111 12677888888888886
Q ss_pred CCccCCCCcccccccCCCCCccccceEEeccCCCCcc-chhhhccCCCcceeecccCcCcccCCCCCcccccceeeecCC
Q 042439 649 DMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLER-LSSSIVDLQNLTELYLEDCPKLKYFPEKGLPSSLLQLYIGGC 727 (766)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~~ 727 (766)
.+..++. +..+++|+.|++++| .++. .+..+..+++|++|++++|+ ++.+++...+++|++|++++|
T Consensus 276 ~l~~~~~----------~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 276 QISDISV----------LNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQ 343 (347)
T ss_dssp CCCCCGG----------GGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC
T ss_pred ccCCChh----------hcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhh
Confidence 3444432 235778889999886 5554 44578889999999999975 666655555789999999998
Q ss_pred hh
Q 042439 728 PL 729 (766)
Q Consensus 728 ~~ 729 (766)
+.
T Consensus 344 ~i 345 (347)
T 4fmz_A 344 VI 345 (347)
T ss_dssp --
T ss_pred cc
Confidence 63
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=9.3e-25 Score=236.70 Aligned_cols=354 Identities=16% Similarity=0.088 Sum_probs=207.2
Q ss_pred CCCCcceEEEEecCCCCCCccccCCCCCCeeEEEEecCCCCCCCCCCCCcCcccceeecCCCCceecCcccccCCCCCCC
Q 042439 96 PHEILEQFCISGYGGTKFPAWLGDSSLPNLVTLKFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPF 175 (766)
Q Consensus 96 ~~~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 175 (766)
.+++|++|+++++.+..+| .+ ..+++|++|++++|.+.+ +| ++.+++|++|++++|. ++.++ ...+
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~l--~~l~~L~~L~Ls~n~l~~-~~-~~~l~~L~~L~Ls~N~-l~~~~--------~~~l 105 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-GI--EKLTGLTKLICTSNNITT-LD-LSQNTNLTYLACDSNK-LTNLD--------VTPL 105 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-TG--GGCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSC-CSCCC--------CTTC
T ss_pred HcCCCCEEEccCCCcccCh-hh--cccCCCCEEEccCCcCCe-Ec-cccCCCCCEEECcCCC-Cceee--------cCCC
Confidence 4567888888877777776 34 357788888888877543 43 7777788888887754 33332 1226
Q ss_pred CCccEEeccCccchhhhhccCCCccccccCcccceecccccccccCCCCCCCCCccEEEEecCCCcccccCCCCccceEE
Q 042439 176 PCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKGPFPEHLPALEMLVIEGCEELSVSVSSLPALCKLQ 255 (766)
Q Consensus 176 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~ 255 (766)
++|++|++++|.... + .+..+++|++|++++|. +++ + .+..+++|++|+
T Consensus 106 ~~L~~L~L~~N~l~~-------l--~~~~l~~L~~L~l~~N~-l~~-l--------------------~l~~l~~L~~L~ 154 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-------L--DVSQNPLLTYLNCARNT-LTE-I--------------------DVSHNTQLTELD 154 (457)
T ss_dssp TTCCEEECCSSCCSC-------C--CCTTCTTCCEEECTTSC-CSC-C--------------------CCTTCTTCCEEE
T ss_pred CcCCEEECCCCcCCe-------e--cCCCCCcCCEEECCCCc-cce-e--------------------ccccCCcCCEEE
Confidence 677777777765321 1 14556666666666553 442 2 233344555555
Q ss_pred EcCCCCceeeccccccCCCCceeeccCCccccccCCCCCCCCCccEEEecccCCccchhcccCccccCCCCCCEEEEccC
Q 042439 256 IGGCKKVVWESATGHLGSQNSVVCRDASNQVFLAGPLKPQLPKLEELEINDMKEHTYIWKSHNGLLQDSCSLKRLTIASC 335 (766)
Q Consensus 256 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 335 (766)
+++|..... . .+..+++|++|+++++
T Consensus 155 l~~n~~~~~---------------------------------------------------~---~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 155 CHLNKKITK---------------------------------------------------L---DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CTTCSCCCC---------------------------------------------------C---CCTTCTTCCEEECCSS
T ss_pred CCCCCcccc---------------------------------------------------c---ccccCCcCCEEECCCC
Confidence 555532110 0 1233445555555543
Q ss_pred CCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCCCCCCCCcceEEEccC
Q 042439 336 PKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPEVALPSKLRKIEICSC 415 (766)
Q Consensus 336 ~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~l~~~ 415 (766)
.++.++. ..+++|+.|++++|.+.+. .+..+++|++|++++|... .+| ...+++|++|++++|
T Consensus 181 -~l~~l~l-----------~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~-~ip-~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 181 -KITELDV-----------SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID-VTPLTQLTYFDCSVN 243 (457)
T ss_dssp -CCCCCCC-----------TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS-CCC-CTTCTTCSEEECCSS
T ss_pred -ccceecc-----------ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc-ccC-ccccCCCCEEEeeCC
Confidence 2333321 1125677777777765432 2666777777777777433 355 555777777777777
Q ss_pred CCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceee
Q 042439 416 DALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLH 495 (766)
Q Consensus 416 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~ 495 (766)
..-. ++. ..+++|+.|++++ .+|+.|+
T Consensus 244 ~l~~-~~~--------------------------~~l~~L~~L~l~~--------------------------n~L~~L~ 270 (457)
T 3bz5_A 244 PLTE-LDV--------------------------STLSKLTTLHCIQ--------------------------TDLLEID 270 (457)
T ss_dssp CCSC-CCC--------------------------TTCTTCCEEECTT--------------------------CCCSCCC
T ss_pred cCCC-cCH--------------------------HHCCCCCEEeccC--------------------------CCCCEEE
Confidence 5322 221 1255666666654 2366777
Q ss_pred ecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCcc
Q 042439 496 VLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLE 575 (766)
Q Consensus 496 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~ 575 (766)
+++|...+.+| ++.+++|+.|++++|...+.+|. ..++|+.|++++| ++|+.|++++|.+.+
T Consensus 271 l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 271 LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTE 332 (457)
T ss_dssp CTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSC
T ss_pred CCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCcccc
Confidence 77777666665 45678888888888877777763 3456666666555 478888888887666
Q ss_pred ccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCC
Q 042439 576 ALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPP 655 (766)
Q Consensus 576 ~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 655 (766)
++ ++++++|+.|++++|.... ++.|+.|++++|.. .+ ...+..|+.+++++|. -...+|.
T Consensus 333 -l~--l~~l~~L~~L~l~~N~l~~-------l~~L~~L~l~~n~l----~g-----~~~~~~l~~l~l~~N~-l~g~ip~ 392 (457)
T 3bz5_A 333 -LD--VSHNTKLKSLSCVNAHIQD-------FSSVGKIPALNNNF----EA-----EGQTITMPKETLTNNS-LTIAVSP 392 (457)
T ss_dssp -CC--CTTCTTCSEEECCSSCCCB-------CTTGGGSSGGGTSE----EE-----EEEEEECCCBCCBTTB-EEEECCT
T ss_pred -cc--cccCCcCcEEECCCCCCCC-------ccccccccccCCcE----Ee-----cceeeecCccccccCc-EEEEcCh
Confidence 33 7788888888888874322 24566666666511 11 1233455666676642 2234444
Q ss_pred C
Q 042439 656 K 656 (766)
Q Consensus 656 ~ 656 (766)
.
T Consensus 393 ~ 393 (457)
T 3bz5_A 393 D 393 (457)
T ss_dssp T
T ss_pred h
Confidence 3
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.1e-23 Score=231.70 Aligned_cols=295 Identities=18% Similarity=0.157 Sum_probs=153.8
Q ss_pred CCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCC--CC
Q 042439 325 CSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPE--VA 402 (766)
Q Consensus 325 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~--~~ 402 (766)
+.+++|+++++ .++.++...+ ..+++|++|+|++|.+.+..|..+.++++|++|++++|. ++.++. ..
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~~--------~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 101 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDEF--------ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFT 101 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTTT--------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSST
T ss_pred CCCcEEECCCC-ccceECHhHc--------cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCccccc
Confidence 46677777764 3444433221 112667777777776555556666677777777777663 333442 23
Q ss_pred CCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccc
Q 042439 403 LPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESL 482 (766)
Q Consensus 403 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l 482 (766)
.+++|++|++++|......+.. +..+++|++|+++++ .+..+ ....+...
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~------------------------~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l---- 151 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYM------------------------FQDLYNLKSLEVGDN-DLVYI-SHRAFSGL---- 151 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTT------------------------TTTCTTCCEEEECCT-TCCEE-CTTSSTTC----
T ss_pred CCCCCCEEECCCCccccCChhH------------------------ccccccCCEEECCCC-cccee-ChhhccCC----
Confidence 4666777777666533222221 233556666666664 23332 22222221
Q ss_pred cccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCC
Q 042439 483 EVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAK 562 (766)
Q Consensus 483 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 562 (766)
++|++|++++|......+..+..+++|+.|++++|...+..+..+..+++|++|++++|..+..+|.......+
T Consensus 152 ------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 152 ------NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp ------TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred ------CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 55666666666555444455666666666666666544333445556666666666666666666555555556
Q ss_pred cceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCC-CCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEE
Q 042439 563 LSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLE-EDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQL 641 (766)
Q Consensus 563 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L 641 (766)
|+.|++++|.+....+..+..+++|++|++++|......+ ....+++|++|++++|. .....+..+..+++|+.|
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L 301 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ----LAVVEPYAFRGLNYLRVL 301 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC----CSEECTTTBTTCTTCCEE
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc----cceECHHHhcCcccCCEE
Confidence 6666666665443222345566666666666664222211 12344555666665531 111112235555555555
Q ss_pred EEeccCCCCccCCCCcccccccCCCCCccccceEEecc
Q 042439 642 RISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFS 679 (766)
Q Consensus 642 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 679 (766)
++++| .+..++... +..+++|+.|++++
T Consensus 302 ~L~~N--~l~~~~~~~--------~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 302 NVSGN--QLTTLEESV--------FHSVGNLETLILDS 329 (477)
T ss_dssp ECCSS--CCSCCCGGG--------BSCGGGCCEEECCS
T ss_pred ECCCC--cCceeCHhH--------cCCCcccCEEEccC
Confidence 55554 333444322 12345555555555
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.6e-23 Score=230.35 Aligned_cols=316 Identities=18% Similarity=0.132 Sum_probs=235.8
Q ss_pred CEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccC-CCCCCCC
Q 042439 328 KRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFP-EVALPSK 406 (766)
Q Consensus 328 ~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~ 406 (766)
+.++.++ ..++.+|.. ++++++.|++++|.+.+..+..+..+++|++|++++|......+ ....+++
T Consensus 14 ~~v~c~~-~~l~~ip~~-----------~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 81 (477)
T 2id5_A 14 RAVLCHR-KRFVAVPEG-----------IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81 (477)
T ss_dssp TEEECCS-CCCSSCCSC-----------CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CEEEeCC-CCcCcCCCC-----------CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCcc
Confidence 4566655 456666643 34789999999999877777789999999999999995554434 3556899
Q ss_pred cceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccC
Q 042439 407 LRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGN 486 (766)
Q Consensus 407 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~ 486 (766)
|++|++++|. +..++.. .+..+++|++|+++++. +..+ ....+..
T Consensus 82 L~~L~L~~n~-l~~~~~~-----------------------~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~--------- 126 (477)
T 2id5_A 82 LRTLGLRSNR-LKLIPLG-----------------------VFTGLSNLTKLDISENK-IVIL-LDYMFQD--------- 126 (477)
T ss_dssp CCEEECCSSC-CCSCCTT-----------------------SSTTCTTCCEEECTTSC-CCEE-CTTTTTT---------
T ss_pred CCEEECCCCc-CCccCcc-----------------------cccCCCCCCEEECCCCc-cccC-ChhHccc---------
Confidence 9999999987 4444432 23457899999999874 4433 2222322
Q ss_pred CCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceE
Q 042439 487 LPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKL 566 (766)
Q Consensus 487 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 566 (766)
.++|++|++++|......+..|..+++|+.|++++|...+..+..+..+++|+.|++++|......+..+..+++|+.|
T Consensus 127 -l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 205 (477)
T 2id5_A 127 -LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205 (477)
T ss_dssp -CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred -cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence 2789999999998877778889999999999999986554445568889999999999996655555577788999999
Q ss_pred EeccCcCccccCccCCCCCCCCeeEecCCCCCCCCC--CCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEe
Q 042439 567 RIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLE--EDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRIS 644 (766)
Q Consensus 567 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~ 644 (766)
++++|...+.+|.......+|++|++++|. ++.++ ....+++|++|++++|. +... .+..+..+++|++|+++
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~--~~~~~~~l~~L~~L~L~ 280 (477)
T 2id5_A 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNP--ISTI--EGSMLHELLRLQEIQLV 280 (477)
T ss_dssp EEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSC--CCEE--CTTSCTTCTTCCEEECC
T ss_pred eCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCc--CCcc--ChhhccccccCCEEECC
Confidence 999999888888877777799999999984 44444 24667899999999862 2211 12337888999999999
Q ss_pred ccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcCc
Q 042439 645 GCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPKL 707 (766)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l 707 (766)
+| .+..++... +..+++|+.|++++ +.++.++. .+..+++|++|++++|+..
T Consensus 281 ~n--~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 281 GG--QLAVVEPYA--------FRGLNYLRVLNVSG-NQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SS--CCSEECTTT--------BTTCTTCCEEECCS-SCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CC--ccceECHHH--------hcCcccCCEEECCC-CcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 86 344443221 24678899999998 58888876 5678899999999987643
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=1.6e-23 Score=223.77 Aligned_cols=308 Identities=15% Similarity=0.048 Sum_probs=196.9
Q ss_pred CCCCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCC-C
Q 042439 323 DSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPE-V 401 (766)
Q Consensus 323 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-~ 401 (766)
.+++++.|+++++ .++.++...+ . .+++|++|++++|.+.+..+..+..+++|++|++++|......+. .
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~~~~~----~----~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLPAALL----D----SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GGCCCSEEEEESC-EESEECTHHH----H----HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCceEEEecCC-chhhCChhHh----c----ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh
Confidence 3567778887775 4666654322 1 126777888877776555555677777777777777754333232 3
Q ss_pred CCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCcccccc
Q 042439 402 ALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLES 481 (766)
Q Consensus 402 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 481 (766)
..+++|++|++++|. +..++.. .+..+
T Consensus 114 ~~l~~L~~L~L~~n~-l~~l~~~-----------------------~~~~l----------------------------- 140 (390)
T 3o6n_A 114 QNVPLLTVLVLERND-LSSLPRG-----------------------IFHNT----------------------------- 140 (390)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTT-----------------------TTTTC-----------------------------
T ss_pred cCCCCCCEEECCCCc-cCcCCHH-----------------------HhcCC-----------------------------
Confidence 446666666666664 2233221 01223
Q ss_pred ccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCC
Q 042439 482 LEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCA 561 (766)
Q Consensus 482 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 561 (766)
++|++|++++|......+..+..+++|++|++++|... .+ .+..+++|+.|++++|. +..++ ..+
T Consensus 141 -------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~l~~L~~L~l~~n~-l~~~~----~~~ 205 (390)
T 3o6n_A 141 -------PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HV--DLSLIPSLFHANVSYNL-LSTLA----IPI 205 (390)
T ss_dssp -------TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BC--CGGGCTTCSEEECCSSC-CSEEE----CCS
T ss_pred -------CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-cc--ccccccccceeeccccc-ccccC----CCC
Confidence 44555555555544444555666777777777776533 32 24556777777777763 33332 224
Q ss_pred CcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEE
Q 042439 562 KLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQL 641 (766)
Q Consensus 562 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L 641 (766)
+|+.|++++|.+.. +|.. ..++|++|++++|. +..++....+++|++|++++|. .....+..+..+++|++|
T Consensus 206 ~L~~L~l~~n~l~~-~~~~--~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 206 AVEELDASHNSINV-VRGP--VNVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNE----LEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp SCSEEECCSSCCCE-EECC--CCSSCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC----CCEEESGGGTTCSSCCEE
T ss_pred cceEEECCCCeeee-cccc--ccccccEEECCCCC-CcccHHHcCCCCccEEECCCCc----CCCcChhHccccccCCEE
Confidence 67777777776543 3322 24677777777774 3334555667778888888752 111223447888999999
Q ss_pred EEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCCCCcccccce
Q 042439 642 RISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPEKGLPSSLLQ 721 (766)
Q Consensus 642 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 721 (766)
++++| .+..+|... ..+++|++|+++++ .++.+|..+..+++|++|++++|+ ++.++. ..+++|++
T Consensus 278 ~L~~n--~l~~~~~~~---------~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~-~~~~~L~~ 343 (390)
T 3o6n_A 278 YISNN--RLVALNLYG---------QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKL-STHHTLKN 343 (390)
T ss_dssp ECCSS--CCCEEECSS---------SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCC-CTTCCCSE
T ss_pred ECCCC--cCcccCccc---------CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeCc-hhhccCCE
Confidence 99987 455565543 36789999999994 888999888889999999999964 677763 44789999
Q ss_pred eeecCChh
Q 042439 722 LYIGGCPL 729 (766)
Q Consensus 722 L~i~~~~~ 729 (766)
|++++|+.
T Consensus 344 L~l~~N~~ 351 (390)
T 3o6n_A 344 LTLSHNDW 351 (390)
T ss_dssp EECCSSCE
T ss_pred EEcCCCCc
Confidence 99999875
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.8e-23 Score=218.37 Aligned_cols=304 Identities=17% Similarity=0.199 Sum_probs=206.1
Q ss_pred ccCCCCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCC
Q 042439 321 LQDSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPE 400 (766)
Q Consensus 321 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~ 400 (766)
+..+++|++|+++++. +..++. + ..+++|++|++++|.+. .++. +..+++|++|++++| .++.++.
T Consensus 40 ~~~l~~L~~L~l~~~~-i~~~~~------~----~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n-~i~~~~~ 105 (347)
T 4fmz_A 40 QEELESITKLVVAGEK-VASIQG------I----EYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTN-KITDISA 105 (347)
T ss_dssp HHHHTTCSEEECCSSC-CCCCTT------G----GGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSS-CCCCCGG
T ss_pred chhcccccEEEEeCCc-cccchh------h----hhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCC-cccCchH
Confidence 3456677777777643 444322 1 12367788888777643 3443 677788888888877 4444555
Q ss_pred CCCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccc
Q 042439 401 VALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLE 480 (766)
Q Consensus 401 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 480 (766)
...+++|++|++++|.. ..++. +..+++|++|++++|..+..+ +. + .
T Consensus 106 ~~~l~~L~~L~l~~n~i-~~~~~-------------------------~~~l~~L~~L~l~~n~~~~~~-~~--~----~ 152 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNI-SDISP-------------------------LANLTKMYSLNLGANHNLSDL-SP--L----S 152 (347)
T ss_dssp GTTCTTCSEEECTTSCC-CCCGG-------------------------GTTCTTCCEEECTTCTTCCCC-GG--G----T
T ss_pred HcCCCcCCEEECcCCcc-cCchh-------------------------hccCCceeEEECCCCCCcccc-cc--h----h
Confidence 66677888888877763 22222 234667888888877655443 11 1 1
Q ss_pred cccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCC
Q 042439 481 SLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPC 560 (766)
Q Consensus 481 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 560 (766)
. .++|++|++++|......+ +..+++|+.|++++|. +..++. +..+++|++|++++|.. ..++. +..+
T Consensus 153 ~------l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~~ 220 (347)
T 4fmz_A 153 N------MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQI-TDITP-VANM 220 (347)
T ss_dssp T------CTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCC-CCCGG-GGGC
T ss_pred h------CCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc-cccccc-ccCCCccceeecccCCC-CCCch-hhcC
Confidence 1 2678888888877554433 6778889999998885 444443 77788999999988844 43433 5677
Q ss_pred CCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcE
Q 042439 561 AKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQ 640 (766)
Q Consensus 561 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~ 640 (766)
++|++|++++|.+.+.. . +..+++|++|++++|. +..++....+++|++|++++| . +... ..+..+++|++
T Consensus 221 ~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n-~-l~~~----~~~~~l~~L~~ 291 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSN-Q-ISDI----SVLNNLSQLNS 291 (347)
T ss_dssp TTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-C-CCCC----GGGGGCTTCSE
T ss_pred CcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCC-c-cCCC----hhhcCCCCCCE
Confidence 88999999988765443 3 7888899999998884 444566677889999999985 2 2211 12788899999
Q ss_pred EEEeccCCCCccCC-CCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCc
Q 042439 641 LRISGCDDDMVSFP-PKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCP 705 (766)
Q Consensus 641 L~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 705 (766)
|++++|. +...+ ..+ ..+++|++|++++| .++.++. +..+++|++|++++|+
T Consensus 292 L~L~~n~--l~~~~~~~l---------~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 292 LFLNNNQ--LGNEDMEVI---------GGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp EECCSSC--CCGGGHHHH---------HTCTTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSCC-
T ss_pred EECcCCc--CCCcChhHh---------hccccCCEEEccCC-ccccccC-hhhhhccceeehhhhc
Confidence 9999963 33332 222 35789999999995 6777765 8889999999999975
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=6.3e-23 Score=231.36 Aligned_cols=307 Identities=14% Similarity=0.042 Sum_probs=179.9
Q ss_pred CCCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCC-CC
Q 042439 324 SCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPE-VA 402 (766)
Q Consensus 324 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-~~ 402 (766)
+.+++.++++++ .++.++...+ . .+++|++|++++|.+.+..+..+..+++|++|++++|......+. +.
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~----~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALL----D----SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHH----H----HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCceEEEeeCC-CCCCcCHHHH----c----cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 567788888775 4566654322 1 126788888888876666566777788888888888754433332 34
Q ss_pred CCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccc
Q 042439 403 LPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESL 482 (766)
Q Consensus 403 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l 482 (766)
.+++|++|++++|. +..+|.. .+..+++|++|
T Consensus 121 ~l~~L~~L~L~~n~-l~~l~~~-----------------------~~~~l~~L~~L------------------------ 152 (597)
T 3oja_B 121 NVPLLTVLVLERND-LSSLPRG-----------------------IFHNTPKLTTL------------------------ 152 (597)
T ss_dssp TCTTCCEEECCSSC-CCCCCTT-----------------------TTTTCTTCCEE------------------------
T ss_pred CCCCCCEEEeeCCC-CCCCCHH-----------------------HhccCCCCCEE------------------------
Confidence 57777777777765 3333322 11224444444
Q ss_pred cccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCC
Q 042439 483 EVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAK 562 (766)
Q Consensus 483 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 562 (766)
++++|......|..++.+++|+.|++++|... .++ +..+++|+.|++++|. +..++ ..++
T Consensus 153 ------------~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~--~~~l~~L~~L~l~~n~-l~~l~----~~~~ 212 (597)
T 3oja_B 153 ------------SMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNL-LSTLA----IPIA 212 (597)
T ss_dssp ------------ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC--GGGCTTCSEEECCSSC-CSEEE----CCTT
T ss_pred ------------EeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC--hhhhhhhhhhhcccCc-ccccc----CCch
Confidence 44444444444445555666666666665432 222 3445666666666652 22221 1235
Q ss_pred cceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEE
Q 042439 563 LSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLR 642 (766)
Q Consensus 563 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~ 642 (766)
|+.|++++|.+.. ++..+ .++|+.|++++|. +..++....+++|++|++++|. .....|..+..+++|+.|+
T Consensus 213 L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 213 VEELDASHNSINV-VRGPV--NVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNE----LEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp CSEEECCSSCCCE-EECSC--CSCCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC----CCEEESGGGTTCSSCCEEE
T ss_pred hheeeccCCcccc-ccccc--CCCCCEEECCCCC-CCCChhhccCCCCCEEECCCCc----cCCCCHHHhcCccCCCEEE
Confidence 6666666665432 22211 2466666666663 2333444556666666666641 1122233467777888888
Q ss_pred EeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCCCCccccccee
Q 042439 643 ISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPEKGLPSSLLQL 722 (766)
Q Consensus 643 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 722 (766)
+++| .+..+|... ..+++|+.|++++ +.+..+|..+..+++|++|++++|+ +..++. ..+++|++|
T Consensus 285 Ls~N--~l~~l~~~~---------~~l~~L~~L~Ls~-N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~L~~L 350 (597)
T 3oja_B 285 ISNN--RLVALNLYG---------QPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHNS-IVTLKL-STHHTLKNL 350 (597)
T ss_dssp CTTS--CCCEEECSS---------SCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSSC-CCCCCC-CTTCCCSEE
T ss_pred CCCC--CCCCCCccc---------ccCCCCcEEECCC-CCCCccCcccccCCCCCEEECCCCC-CCCcCh-hhcCCCCEE
Confidence 8776 445555443 3567888888888 4777788777778888888888854 555553 345788888
Q ss_pred eecCChh
Q 042439 723 YIGGCPL 729 (766)
Q Consensus 723 ~i~~~~~ 729 (766)
++++||-
T Consensus 351 ~l~~N~~ 357 (597)
T 3oja_B 351 TLSHNDW 357 (597)
T ss_dssp ECCSSCE
T ss_pred EeeCCCC
Confidence 8888764
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.6e-22 Score=216.04 Aligned_cols=124 Identities=18% Similarity=0.201 Sum_probs=95.4
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEe
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRI 568 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 568 (766)
++|++|++++|..... ..+..+++|++|++++|...+..|..+..+++|++|++++| .+..+|.....+++|++|++
T Consensus 226 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDL 302 (390)
T ss_dssp SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEEC
T ss_pred ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEEC
Confidence 5577777777765543 35677888999999998766666778888999999999998 55667776777889999999
Q ss_pred ccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccc
Q 042439 569 HGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGN 618 (766)
Q Consensus 569 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N 618 (766)
++|.+. .+|..+..+++|++|++++|.. ..++ ...+++|++|++++|
T Consensus 303 ~~n~l~-~~~~~~~~l~~L~~L~L~~N~i-~~~~-~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 303 SHNHLL-HVERNQPQFDRLENLYLDHNSI-VTLK-LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCC-CCCC-CCTTCCCSEEECCSS
T ss_pred CCCcce-ecCccccccCcCCEEECCCCcc-ceeC-chhhccCCEEEcCCC
Confidence 998754 5666777889999999998853 3333 566778888888886
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.3e-22 Score=225.52 Aligned_cols=238 Identities=16% Similarity=0.154 Sum_probs=167.5
Q ss_pred ccCCCCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCC
Q 042439 321 LQDSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPE 400 (766)
Q Consensus 321 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~ 400 (766)
++.+++|++|+++++ .++.++...+ ..+++|++|++++|.+.+..|..+..+++|++|++++|... .++
T Consensus 119 ~~~l~~L~~L~L~~n-~l~~l~~~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~- 187 (597)
T 3oja_B 119 FQNVPLLTVLVLERN-DLSSLPRGIF--------HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD- 187 (597)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTT--------TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC-
T ss_pred HcCCCCCCEEEeeCC-CCCCCCHHHh--------ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC-
Confidence 444555555555554 3344333211 11267777777777766666666777888888888887433 332
Q ss_pred CCCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccc
Q 042439 401 VALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLE 480 (766)
Q Consensus 401 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 480 (766)
...+++|+.|++++|.. ..++ ..++|+.|+++++. +..+ +
T Consensus 188 ~~~l~~L~~L~l~~n~l-~~l~----------------------------~~~~L~~L~ls~n~-l~~~-~--------- 227 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLL-STLA----------------------------IPIAVEELDASHNS-INVV-R--------- 227 (597)
T ss_dssp GGGCTTCSEEECCSSCC-SEEE----------------------------CCTTCSEEECCSSC-CCEE-E---------
T ss_pred hhhhhhhhhhhcccCcc-cccc----------------------------CCchhheeeccCCc-cccc-c---------
Confidence 44577888888877652 2221 13467888888763 3333 1
Q ss_pred cccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCC
Q 042439 481 SLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPC 560 (766)
Q Consensus 481 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~ 560 (766)
+..+++|+.|++++|...+. ..+..+++|+.|++++|...+..|..+..+++|++|++++| .+..+|..+..+
T Consensus 228 ----~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l 300 (597)
T 3oja_B 228 ----GPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPI 300 (597)
T ss_dssp ----CSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCC
T ss_pred ----cccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccC
Confidence 12236799999998887653 56788999999999999877777888999999999999998 556678777788
Q ss_pred CCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEecccc
Q 042439 561 AKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNM 619 (766)
Q Consensus 561 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~ 619 (766)
++|+.|++++|.+. .+|..+..+++|++|++++|.... ++ ...+++|+.|++++|.
T Consensus 301 ~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~-~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK-LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC-CCTTCCCSEEECCSSC
T ss_pred CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC-hhhcCCCCEEEeeCCC
Confidence 99999999999865 677778889999999999986433 33 5667889999999874
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=1e-20 Score=196.95 Aligned_cols=150 Identities=13% Similarity=0.162 Sum_probs=107.7
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCC--cccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceE
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLK--NLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKL 566 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 566 (766)
++|++|++++|......+..+..+++|+.|++++|.... ..+..+..+++|++|++++| .+..+|.... ++|++|
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L 197 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP--PSLTEL 197 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC--TTCSEE
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc--ccCCEE
Confidence 458888888877776667778889999999999987542 44667888999999999998 4566776554 689999
Q ss_pred EeccCcCccccCccCCCCCCCCeeEecCCCCCCCCC-CCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEec
Q 042439 567 RIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLE-EDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISG 645 (766)
Q Consensus 567 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~ 645 (766)
++++|.+.+..|..+..+++|++|++++|......+ ....+++|++|++++|. ...+|..+..+++|++|++++
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-----l~~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-----LVKVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-----CSSCCTTTTTCSSCCEEECCS
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-----CccCChhhccCCCcCEEECCC
Confidence 999998777767788889999999999885433222 23445666666666641 113334456666666666666
Q ss_pred c
Q 042439 646 C 646 (766)
Q Consensus 646 ~ 646 (766)
|
T Consensus 273 N 273 (330)
T 1xku_A 273 N 273 (330)
T ss_dssp S
T ss_pred C
Confidence 5
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=5.5e-21 Score=199.17 Aligned_cols=149 Identities=14% Similarity=0.114 Sum_probs=96.8
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCC--CcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceE
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNL--KNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKL 566 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l--~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 566 (766)
++|++|++++|......+..+..+++|+.|++++|... +..+..+..+ +|++|++++| .+..+|..+. ++|++|
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~--~~L~~L 198 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP--ETLNEL 198 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC--SSCSCC
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc--CCCCEE
Confidence 45777777776665544556777888888888887653 2345556666 8888888887 4555666444 588888
Q ss_pred EeccCcCccccCccCCCCCCCCeeEecCCCCCCCCC-CCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEec
Q 042439 567 RIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLE-EDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISG 645 (766)
Q Consensus 567 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~ 645 (766)
++++|.+.+..+..+..+++|++|++++|......+ ....+++|++|++++|. ...+|..+..+++|++|++++
T Consensus 199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-----l~~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-----LSRVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-----CCBCCTTGGGCTTCCEEECCS
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-----CeecChhhhcCccCCEEECCC
Confidence 888887766666777888888888888874333222 23445666666666641 113344456666666666666
Q ss_pred c
Q 042439 646 C 646 (766)
Q Consensus 646 ~ 646 (766)
|
T Consensus 274 N 274 (332)
T 2ft3_A 274 N 274 (332)
T ss_dssp S
T ss_pred C
Confidence 5
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.3e-22 Score=208.91 Aligned_cols=178 Identities=15% Similarity=0.106 Sum_probs=110.1
Q ss_pred CcccEEEeecCCCCc--ccCcccCCCCCccEEEecC-CCCCcccC-CCCCCCCcceEEEccCCCCCccccccccCcchhH
Q 042439 358 CRLEYLRLSGCQGLV--KLPQSSLSLSSLREIEIYG-CWSLVSFP-EVALPSKLRKIEICSCDALKSLPEAWMCDTNSSL 433 (766)
Q Consensus 358 ~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~-~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 433 (766)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |...+.+| ....+++|++|++++|.....+|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--------- 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF--------- 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG---------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH---------
Confidence 478889999988777 7888888899999999985 54444444 2334556666666655433233221
Q ss_pred HHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCC
Q 042439 434 EILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNT 513 (766)
Q Consensus 434 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 513 (766)
+..+ ++|++|++++|.....+|..+..++
T Consensus 121 ---------------~~~l------------------------------------~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 121 ---------------LSQI------------------------------------KTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp ---------------GGGC------------------------------------TTCCEEECCSSEEESCCCGGGGGCT
T ss_pred ---------------HhCC------------------------------------CCCCEEeCCCCccCCcCChHHhcCC
Confidence 0111 3455555555554445555566666
Q ss_pred CCCEEEeeeCCCCCcccccccCCC-CCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEe
Q 042439 514 SLETIDICYCGNLKNLPSGLHNLH-QLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTI 592 (766)
Q Consensus 514 ~L~~L~l~~~~~l~~lp~~l~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 592 (766)
+|++|++++|...+.+|..+..++ +|++|++++|...+.+|..+..++ |+.|++++|.+.+..|..+..+++|++|++
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 228 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEEC
Confidence 677777776655556666666665 667777766655445555555554 666777666666566666666666666666
Q ss_pred cCCC
Q 042439 593 GRGV 596 (766)
Q Consensus 593 ~~~~ 596 (766)
++|.
T Consensus 229 ~~N~ 232 (313)
T 1ogq_A 229 AKNS 232 (313)
T ss_dssp CSSE
T ss_pred CCCc
Confidence 6664
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=3.7e-23 Score=234.37 Aligned_cols=225 Identities=10% Similarity=0.021 Sum_probs=118.1
Q ss_pred CCcceeeecCCCchhh-hHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecC----------CCCccc--cCC
Q 042439 489 PSLKSLHVLSCSKLES-IAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGR----------CGNLES--FPE 555 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~----------~~~l~~--l~~ 555 (766)
++|++|++++|..... ++..+..+++|+.|+++++.....++.....+++|++|++++ |..+.. ++.
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 5566666666663332 223456666777777663321122233334566677777763 433331 111
Q ss_pred CCCCCCCcceEEeccCcCccccCccCCC-CCCCCeeEecC---CCCCCCCCC-------CCCCCCcceeEecccccc-ch
Q 042439 556 GGLPCAKLSKLRIHGCERLEALPKGLHN-LTSLQELTIGR---GVELPSLEE-------DGLPTNLHSLWIAGNMEI-WK 623 (766)
Q Consensus 556 ~~~~~~~L~~L~l~~~~~~~~~p~~~~~-l~~L~~L~l~~---~~~l~~~~~-------~~~~~~L~~L~l~~N~~~-l~ 623 (766)
....+++|+.|+++.+.+.+..+..+.. +++|++|++++ |+.++..+. ...+++|++|++++ |.. +.
T Consensus 373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~-~~~~l~ 451 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL-RQGGLT 451 (592)
T ss_dssp HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC-CGGGCC
T ss_pred HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec-CCCCcc
Confidence 1223567777777555554444444443 66777777763 334443221 12356777777765 322 11
Q ss_pred hhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCcc--chhhhccCCCcceeec
Q 042439 624 STIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLER--LSSSIVDLQNLTELYL 701 (766)
Q Consensus 624 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~L~~L~l 701 (766)
... .......+++|++|++++|......++... ..+++|+.|++++|+ ++. ++.....+++|++|++
T Consensus 452 ~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~---------~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 452 DLG-LSYIGQYSPNVRWMLLGYVGESDEGLMEFS---------RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp HHH-HHHHHHSCTTCCEEEECSCCSSHHHHHHHH---------TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEE
T ss_pred HHH-HHHHHHhCccceEeeccCCCCCHHHHHHHH---------hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeEC
Confidence 111 000123478888888887632111222211 345788888888876 542 4445567899999999
Q ss_pred ccCcCcccCCCCCc---ccccceeeecC
Q 042439 702 EDCPKLKYFPEKGL---PSSLLQLYIGG 726 (766)
Q Consensus 702 ~~c~~l~~l~~~~~---~~~L~~L~i~~ 726 (766)
++|+ ++......+ +|.+....+..
T Consensus 521 s~n~-it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 521 QGYR-ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp ESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred cCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence 9987 554332222 34454444444
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=3.3e-22 Score=205.97 Aligned_cols=251 Identities=15% Similarity=0.120 Sum_probs=201.1
Q ss_pred CceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecC-CCchhhhHhhcCCCCCCCEEEeeeCCCCCcccc
Q 042439 453 SLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLS-CSKLESIAERLDNNTSLETIDICYCGNLKNLPS 531 (766)
Q Consensus 453 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~ 531 (766)
.+++.|+++++. +.. ...+|..+..+ ++|++|++++ |...+.+|..++.+++|++|++++|...+.+|.
T Consensus 50 ~~l~~L~L~~~~-l~~---~~~~~~~l~~l------~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPK---PYPIPSSLANL------PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCC-CSS---CEECCGGGGGC------TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred ceEEEEECCCCC-ccC---CcccChhHhCC------CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH
Confidence 478999999874 221 00344444444 8899999995 777778899999999999999999987778899
Q ss_pred cccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCC-CCCeeEecCCCCCCCCCC-CCCCCC
Q 042439 532 GLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLT-SLQELTIGRGVELPSLEE-DGLPTN 609 (766)
Q Consensus 532 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~-~L~~L~l~~~~~l~~~~~-~~~~~~ 609 (766)
.+..+++|++|++++|.....+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.....++. ...++
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence 999999999999999976668888888899999999999998889999999998 999999999965534443 34444
Q ss_pred cceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCc-cchh
Q 042439 610 LHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLE-RLSS 688 (766)
Q Consensus 610 L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~ 688 (766)
|++|++++|.. ....+..+..+++|+.|++++|. +...++.+ ..+++|++|+++++ .+. .+|.
T Consensus 199 L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~---------~~l~~L~~L~Ls~N-~l~~~~p~ 262 (313)
T 1ogq_A 199 LAFVDLSRNML----EGDASVLFGSDKNTQKIHLAKNS--LAFDLGKV---------GLSKNLNGLDLRNN-RIYGTLPQ 262 (313)
T ss_dssp CSEEECCSSEE----EECCGGGCCTTSCCSEEECCSSE--ECCBGGGC---------CCCTTCCEEECCSS-CCEECCCG
T ss_pred ccEEECcCCcc----cCcCCHHHhcCCCCCEEECCCCc--eeeecCcc---------cccCCCCEEECcCC-cccCcCCh
Confidence 99999999622 22334458899999999999973 33222222 36789999999995 666 7888
Q ss_pred hhccCCCcceeecccCcCcccCCCCCcccccceeeecCChhH
Q 042439 689 SIVDLQNLTELYLEDCPKLKYFPEKGLPSSLLQLYIGGCPLI 730 (766)
Q Consensus 689 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~~~~l 730 (766)
++..+++|++|++++|+.-+.+|....+++|+++++.+|+.+
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred HHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 999999999999999876668888766899999999999854
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.6e-21 Score=200.48 Aligned_cols=218 Identities=23% Similarity=0.326 Sum_probs=105.6
Q ss_pred cceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEecc
Q 042439 491 LKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHG 570 (766)
Q Consensus 491 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 570 (766)
++.|++++|... .+|..++.+++|++|++++|... .+|..+..+++|++|++++|. +..+|..+..+++|++|++++
T Consensus 83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEE
T ss_pred eeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCC
Confidence 444444443322 33333444444444444444322 444444444444444444442 224444444444444444444
Q ss_pred CcCccccCccCCC---------CCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEE
Q 042439 571 CERLEALPKGLHN---------LTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQL 641 (766)
Q Consensus 571 ~~~~~~~p~~~~~---------l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L 641 (766)
|...+.+|..+.. +++|++|++++|.........+.+++|++|++++|. ...++..+..+++|++|
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-----l~~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-----LSALGPAIHHLPKLEEL 234 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-----CCCCCGGGGGCTTCCEE
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-----CCcCchhhccCCCCCEE
Confidence 4444444443322 445555555544322111122344455555555431 11122235566666666
Q ss_pred EEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCC-CCcccccc
Q 042439 642 RISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPE-KGLPSSLL 720 (766)
Q Consensus 642 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~ 720 (766)
++++|. ....+|..+ ..+++|++|++++|+.++.+|..+..+++|++|++++|+.++.+|. .+.+++|+
T Consensus 235 ~Ls~n~-~~~~~p~~~---------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 235 DLRGCT-ALRNYPPIF---------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp ECTTCT-TCCBCCCCT---------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred ECcCCc-chhhhHHHh---------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 666632 334444443 3456666666666666666666666666677777776666666665 22255566
Q ss_pred eeeecC
Q 042439 721 QLYIGG 726 (766)
Q Consensus 721 ~L~i~~ 726 (766)
.+++..
T Consensus 305 ~l~l~~ 310 (328)
T 4fcg_A 305 IILVPP 310 (328)
T ss_dssp EEECCG
T ss_pred EEeCCH
Confidence 665553
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=7.9e-21 Score=196.82 Aligned_cols=229 Identities=21% Similarity=0.265 Sum_probs=190.0
Q ss_pred CCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccc
Q 042439 452 SSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPS 531 (766)
Q Consensus 452 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~ 531 (766)
.+.++.|+++++. ++. +|..+..+ ++|++|++++|... .+|..++.+++|++|++++|... .+|.
T Consensus 80 ~~~l~~L~L~~n~-l~~------lp~~l~~l------~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~ 144 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQ------FPDQAFRL------SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPA 144 (328)
T ss_dssp STTCCEEEEESSC-CSS------CCSCGGGG------TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCG
T ss_pred ccceeEEEccCCC-chh------cChhhhhC------CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcH
Confidence 4679999999963 433 34433333 88999999999877 88888999999999999999654 8899
Q ss_pred cccCCCCCCEEEecCCCCccccCCCCCC---------CCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCC
Q 042439 532 GLHNLHQLQEISIGRCGNLESFPEGGLP---------CAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLE 602 (766)
Q Consensus 532 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~---------~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~ 602 (766)
.+..+++|++|++++|...+.+|..+.. +++|++|++++|.+. .+|..++.+++|++|++++|.....++
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~ 223 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP 223 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCG
T ss_pred HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCch
Confidence 9999999999999999899999887654 899999999999866 888889999999999999997665555
Q ss_pred CCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCC
Q 042439 603 EDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPN 682 (766)
Q Consensus 603 ~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 682 (766)
..+.+++|++|++++| . .....|..+..+++|++|++++| .....+|..+ ..+++|+.|++++|+.
T Consensus 224 ~l~~l~~L~~L~Ls~n-~---~~~~~p~~~~~l~~L~~L~L~~n-~~~~~~p~~~---------~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGC-T---ALRNYPPIFGGRAPLKRLILKDC-SNLLTLPLDI---------HRLTQLEKLDLRGCVN 289 (328)
T ss_dssp GGGGCTTCCEEECTTC-T---TCCBCCCCTTCCCCCCEEECTTC-TTCCBCCTTG---------GGCTTCCEEECTTCTT
T ss_pred hhccCCCCCEEECcCC-c---chhhhHHHhcCCCCCCEEECCCC-Cchhhcchhh---------hcCCCCCEEeCCCCCc
Confidence 6678899999999995 2 33445566899999999999995 3567788766 4688999999999999
Q ss_pred CccchhhhccCCCcceeecccCcCcccCC
Q 042439 683 LERLSSSIVDLQNLTELYLEDCPKLKYFP 711 (766)
Q Consensus 683 l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 711 (766)
++.+|.++.++++|+.+.+.. +.+..+.
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~~-~~~~~l~ 317 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVPP-HLQAQLD 317 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECCG-GGSCC--
T ss_pred hhhccHHHhhccCceEEeCCH-HHHHHHh
Confidence 999999999999999999997 3444443
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=4.3e-20 Score=192.27 Aligned_cols=219 Identities=16% Similarity=0.113 Sum_probs=129.6
Q ss_pred CcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccC-CCCCCCCcceEEEccCCCCCccccccccCcchhHHHH
Q 042439 358 CRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFP-EVALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEIL 436 (766)
Q Consensus 358 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l 436 (766)
+.+++|++++|.+.+..+..+..+++|++|++++|......| ....+++|++|++++|. +..+|..+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~----------- 119 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM----------- 119 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC-----------
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhh-----------
Confidence 456666666666444444455666666666666664333323 23345666666666654 33333320
Q ss_pred HHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchh--hhHhhcCCCCC
Q 042439 437 MEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLE--SIAERLDNNTS 514 (766)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~ 514 (766)
.++|++|+++++. ++.+ +.. .+.. .++|++|++++|.... ..+..+..+++
T Consensus 120 ---------------~~~L~~L~l~~n~-l~~~-~~~----~~~~------l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 120 ---------------PKTLQELRVHENE-ITKV-RKS----VFNG------LNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp ---------------CTTCCEEECCSSC-CCBB-CHH----HHTT------CTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred ---------------cccccEEECCCCc-cccc-CHh----HhcC------CccccEEECCCCcCCccCcChhhccCCCC
Confidence 2356666666542 2222 111 1111 1567777777666543 44556677777
Q ss_pred CCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecC
Q 042439 515 LETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGR 594 (766)
Q Consensus 515 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 594 (766)
|+.|++++|. +..+|..+. ++|++|++++|......+..+..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 173 L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 173 LSYIRIADTN-ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp CCEEECCSSC-CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred cCEEECCCCc-cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 8888887774 445555443 7788888888754444455566677888888888776665555677778888888887
Q ss_pred CCCCCCCCCCCCCCCcceeEeccc
Q 042439 595 GVELPSLEEDGLPTNLHSLWIAGN 618 (766)
Q Consensus 595 ~~~l~~~~~~~~~~~L~~L~l~~N 618 (766)
|...........+++|++|++++|
T Consensus 250 N~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 250 NKLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp SCCSSCCTTTTTCSSCCEEECCSS
T ss_pred CcCccCChhhccCCCcCEEECCCC
Confidence 754433334566777888888875
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=3.9e-20 Score=192.71 Aligned_cols=238 Identities=17% Similarity=0.113 Sum_probs=149.5
Q ss_pred CCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccC-CCCCC
Q 042439 326 SLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFP-EVALP 404 (766)
Q Consensus 326 ~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~l 404 (766)
.++.++++++ .++.+|.. .+++|++|++++|.+.+..+..+..+++|++|++++|......+ ....+
T Consensus 34 ~l~~l~~~~~-~l~~ip~~-----------~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 101 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKE-----------ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101 (332)
T ss_dssp ETTEEECCSS-CCSSCCSC-----------CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred cCCEEECCCC-CccccCCC-----------CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence 4666666664 34444432 22567777777777555545567777777777777775443323 34457
Q ss_pred CCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccc
Q 042439 405 SKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEV 484 (766)
Q Consensus 405 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~ 484 (766)
++|++|++++|. +..+|..+ .++|++|+++++. ++.+ +...+..
T Consensus 102 ~~L~~L~L~~n~-l~~l~~~~--------------------------~~~L~~L~l~~n~-i~~~-~~~~~~~------- 145 (332)
T 2ft3_A 102 RKLQKLYISKNH-LVEIPPNL--------------------------PSSLVELRIHDNR-IRKV-PKGVFSG------- 145 (332)
T ss_dssp TTCCEEECCSSC-CCSCCSSC--------------------------CTTCCEEECCSSC-CCCC-CSGGGSS-------
T ss_pred CCCCEEECCCCc-CCccCccc--------------------------cccCCEEECCCCc-cCcc-CHhHhCC-------
Confidence 777777777765 33444321 2467777777652 3322 2111111
Q ss_pred cCCCCCcceeeecCCCchh--hhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCC
Q 042439 485 GNLPPSLKSLHVLSCSKLE--SIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAK 562 (766)
Q Consensus 485 ~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 562 (766)
.++|++|++++|.... ..+..+..+ +|+.|++++|. +..+|..+. ++|++|++++|......+..+..+++
T Consensus 146 ---l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~ 218 (332)
T 2ft3_A 146 ---LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSK 218 (332)
T ss_dssp ---CSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTT
T ss_pred ---CccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCC
Confidence 2667777777776643 445556666 78888888875 445665443 68888888887554444456677788
Q ss_pred cceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccc
Q 042439 563 LSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGN 618 (766)
Q Consensus 563 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N 618 (766)
|+.|++++|.+.+..+..+..+++|++|++++|...........+++|++|++++|
T Consensus 219 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 219 LYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC
Confidence 88888888877666666777888888888888754433333566778888888885
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1e-22 Score=230.75 Aligned_cols=156 Identities=14% Similarity=0.072 Sum_probs=73.8
Q ss_pred CCCCcceEEEEecCC----CCCCccccC----------CCCCCeeEEEEecCCCCCCCC-CCCC-cCc-ccceeecCCCC
Q 042439 96 PHEILEQFCISGYGG----TKFPAWLGD----------SSLPNLVTLKFENCDMCTALP-SVGQ-LPS-LKHLAVCGMSR 158 (766)
Q Consensus 96 ~~~~L~~L~l~~~~~----~~lp~~~~~----------~~l~~L~~L~L~~~~~~~~l~-~l~~-l~~-L~~L~L~~~~~ 158 (766)
.+++|++|+++++.. ..+|...+. ..+++|++|+|++|.+....+ .++. +++ |++|++++|..
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 345788888876421 122221110 146777777777775432221 2333 333 77777777653
Q ss_pred ceecCcccccCCCCCCCCCccEEeccCccchhhhhccCCCccccccCcccceecccccccccC----CCC---CCCCCcc
Q 042439 159 VKRLGSEFYGNDPPIPFPCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKG----PFP---EHLPALE 231 (766)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~----~~p---~~l~~L~ 231 (766)
+...+..... ..+++|++|++++|..... . ..++......+++|++|+++++. +++ .++ ..+++|+
T Consensus 151 ~~~~~l~~~~----~~~~~L~~L~L~~~~~~~~-~-~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 151 FTTDGLLSIV----THCRKIKTLLMEESSFSEK-D-GKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEHHHHHHHH----HHCTTCSEEECTTCEEECC-C-SHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCC
T ss_pred cCHHHHHHHH----hhCCCCCEEECccccccCc-c-hhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCc
Confidence 3322111000 0167777777777753111 0 00011233456677777776553 320 111 1345566
Q ss_pred EEEEecCCC--cccccCCCCccceEEEcC
Q 042439 232 MLVIEGCEE--LSVSVSSLPALCKLQIGG 258 (766)
Q Consensus 232 ~L~l~~~~~--l~~~~~~~~~L~~L~l~~ 258 (766)
.|++.+|.. +...+..+++|++|.++.
T Consensus 224 ~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 224 SVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp EEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred EEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 666655542 122333455555555554
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=9.2e-23 Score=223.49 Aligned_cols=347 Identities=19% Similarity=0.180 Sum_probs=221.0
Q ss_pred ccccCCCCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcc-cCCCC----CccEEEecCCC
Q 042439 319 GLLQDSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQS-SLSLS----SLREIEIYGCW 393 (766)
Q Consensus 319 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~-~~~l~----~L~~L~L~~~~ 393 (766)
..+..+++|++|++++|. ++...... +......+++|++|++++|.+....+.. ...++ +|++|++++|.
T Consensus 22 ~~~~~~~~L~~L~L~~~~-l~~~~~~~----l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 96 (461)
T 1z7x_W 22 ELLPLLQQCQVVRLDDCG-LTEARCKD----ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 96 (461)
T ss_dssp HHHHHHTTCSEEEEESSC-CCHHHHHH----HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC
T ss_pred HHHhhcCCccEEEccCCC-CCHHHHHH----HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC
Confidence 346778899999999985 44322111 2222223488999999999865432222 22344 79999999996
Q ss_pred CCc----ccC-CCCCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccc
Q 042439 394 SLV----SFP-EVALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTC 468 (766)
Q Consensus 394 ~l~----~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 468 (766)
... .++ ....+++|++|++++|..-...+..+ .. .-....++|++|++++|. ++.
T Consensus 97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l-----------~~--------~l~~~~~~L~~L~L~~n~-l~~ 156 (461)
T 1z7x_W 97 LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL-----------CE--------GLLDPQCRLEKLQLEYCS-LSA 156 (461)
T ss_dssp CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH-----------HH--------HHTSTTCCCCEEECTTSC-CBG
T ss_pred CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHH-----------HH--------HHhcCCCcceEEECCCCC-CCH
Confidence 442 223 34568899999999887322111110 00 001124579999999873 432
Q ss_pred cccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcC-----CCCCCCEEEeeeCCCCCc----ccccccCCCCC
Q 042439 469 IFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLD-----NNTSLETIDICYCGNLKN----LPSGLHNLHQL 539 (766)
Q Consensus 469 ~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~l~~----lp~~l~~l~~L 539 (766)
. ....++..+..+ ++|++|++++|......+..+. ..++|++|++++|..... ++..+..+++|
T Consensus 157 ~-~~~~l~~~l~~~------~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 229 (461)
T 1z7x_W 157 A-SCEPLASVLRAK------PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229 (461)
T ss_dssp G-GHHHHHHHHHHC------TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTC
T ss_pred H-HHHHHHHHHhhC------CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCc
Confidence 2 111122222222 7899999999987664333332 467999999999965543 46677789999
Q ss_pred CEEEecCCCCccc----c-CCCCCCCCCcceEEeccCcCccc----cCccCCCCCCCCeeEecCCCCCCC----CCC--C
Q 042439 540 QEISIGRCGNLES----F-PEGGLPCAKLSKLRIHGCERLEA----LPKGLHNLTSLQELTIGRGVELPS----LEE--D 604 (766)
Q Consensus 540 ~~L~l~~~~~l~~----l-~~~~~~~~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~l~~----~~~--~ 604 (766)
++|++++|..... + +.....+++|++|++++|.+... ++..+..+++|++|++++|..... +.. .
T Consensus 230 ~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL 309 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred cEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc
Confidence 9999999953321 1 22223578999999999976553 566677799999999999853211 111 0
Q ss_pred CCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccC-CCCcccccccCCC-CCccccceEEeccCCC
Q 042439 605 GLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSF-PPKADDIRLGTAL-PLPASLTSLLIFSFPN 682 (766)
Q Consensus 605 ~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~ 682 (766)
...++|++|++++|...-.....++..+..+++|++|++++|. +... +..+. ..+ ...++|++|++++| .
T Consensus 310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--i~~~~~~~l~-----~~l~~~~~~L~~L~L~~n-~ 381 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR--LEDAGVRELC-----QGLGQPGSVLRVLWLADC-D 381 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB--CHHHHHHHHH-----HHHTSTTCCCCEEECTTS-C
T ss_pred cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc--cccccHHHHH-----HHHcCCCCceEEEECCCC-C
Confidence 2236999999999532222222344457788999999999973 2211 11010 000 12569999999996 6
Q ss_pred Cc-----cchhhhccCCCcceeecccCc
Q 042439 683 LE-----RLSSSIVDLQNLTELYLEDCP 705 (766)
Q Consensus 683 l~-----~l~~~~~~l~~L~~L~l~~c~ 705 (766)
++ .++..+..+++|++|++++|+
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 76 678788889999999999975
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=1.8e-22 Score=221.23 Aligned_cols=108 Identities=22% Similarity=0.201 Sum_probs=60.0
Q ss_pred CCcceeeecCCCchhhhHhh----c-CCCCCCCEEEeeeCCCCCc----ccccccCCCCCCEEEecCCCCccccCCCCC-
Q 042439 489 PSLKSLHVLSCSKLESIAER----L-DNNTSLETIDICYCGNLKN----LPSGLHNLHQLQEISIGRCGNLESFPEGGL- 558 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~----~-~~l~~L~~L~l~~~~~l~~----lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~- 558 (766)
++|++|++++|......+.. + ...++|+.|++++|..... ++..+..+++|++|++++|......+..+.
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 363 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH
Confidence 55666666666554322221 1 1235677777777654333 344555567777777777633221111111
Q ss_pred ----CCCCcceEEeccCcCcc----ccCccCCCCCCCCeeEecCCC
Q 042439 559 ----PCAKLSKLRIHGCERLE----ALPKGLHNLTSLQELTIGRGV 596 (766)
Q Consensus 559 ----~~~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~ 596 (766)
..++|++|++++|.+.. .+|..+..+++|++|++++|.
T Consensus 364 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 364 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 14577777777776554 555566667777777777764
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=3.6e-18 Score=190.35 Aligned_cols=258 Identities=27% Similarity=0.345 Sum_probs=175.1
Q ss_pred CcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCCCCCCCCcceEEEccCCCCCccccccccCcchhHHHHH
Q 042439 358 CRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPEVALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILM 437 (766)
Q Consensus 358 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~ 437 (766)
.+++.|++++|.+ ..+|..+. ++|++|++++|. ++.+|. .+++|++|++++|. +..+|..
T Consensus 40 ~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~-l~~lp~~------------- 99 (622)
T 3g06_A 40 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ-LTSLPVL------------- 99 (622)
T ss_dssp HCCCEEECCSSCC-SCCCSCCC--TTCSEEEECSCC-CSCCCC--CCTTCCEEEECSCC-CSCCCCC-------------
T ss_pred CCCcEEEecCCCc-CccChhhC--CCCcEEEecCCC-CCCCCC--cCCCCCEEEcCCCc-CCcCCCC-------------
Confidence 3578888888874 46666554 788888888884 445665 57788888888876 4455442
Q ss_pred HhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCE
Q 042439 438 EEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLET 517 (766)
Q Consensus 438 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 517 (766)
+++|++|++++| .++.+ +. .+++|+.|++++|.... +|. .+++|++
T Consensus 100 --------------l~~L~~L~Ls~N-~l~~l-~~--------------~l~~L~~L~L~~N~l~~-lp~---~l~~L~~ 145 (622)
T 3g06_A 100 --------------PPGLLELSIFSN-PLTHL-PA--------------LPSGLCKLWIFGNQLTS-LPV---LPPGLQE 145 (622)
T ss_dssp --------------CTTCCEEEECSC-CCCCC-CC--------------CCTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred --------------CCCCCEEECcCC-cCCCC-CC--------------CCCCcCEEECCCCCCCc-CCC---CCCCCCE
Confidence 567888888776 33333 11 23668888888776443 443 2478888
Q ss_pred EEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCC
Q 042439 518 IDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVE 597 (766)
Q Consensus 518 L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 597 (766)
|++++|. +..+|. .+++|+.|++++| .+..+| ..+++|+.|++++|.+. .+|.. +++|+.|++++|.
T Consensus 146 L~Ls~N~-l~~l~~---~~~~L~~L~L~~N-~l~~l~---~~~~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~- 212 (622)
T 3g06_A 146 LSVSDNQ-LASLPA---LPSELCKLWAYNN-QLTSLP---MLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNR- 212 (622)
T ss_dssp EECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSC-
T ss_pred EECcCCc-CCCcCC---ccCCCCEEECCCC-CCCCCc---ccCCCCcEEECCCCCCC-CCCCc---cchhhEEECcCCc-
Confidence 8888875 445553 3567888888887 455566 34568888888888754 34442 4778888888874
Q ss_pred CCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEe
Q 042439 598 LPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLI 677 (766)
Q Consensus 598 l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 677 (766)
+..++. .+++|+.|++++|. +. .+| ..+++|+.|++++| .+..+|. .+++|+.|++
T Consensus 213 l~~l~~--~~~~L~~L~Ls~N~--L~---~lp---~~l~~L~~L~Ls~N--~L~~lp~------------~~~~L~~L~L 268 (622)
T 3g06_A 213 LTSLPA--LPSGLKELIVSGNR--LT---SLP---VLPSELKELMVSGN--RLTSLPM------------LPSGLLSLSV 268 (622)
T ss_dssp CSSCCC--CCTTCCEEECCSSC--CS---CCC---CCCTTCCEEECCSS--CCSCCCC------------CCTTCCEEEC
T ss_pred ccccCC--CCCCCCEEEccCCc--cC---cCC---CCCCcCcEEECCCC--CCCcCCc------------ccccCcEEeC
Confidence 334443 35788888888852 22 122 34578888888886 4556665 3568888888
Q ss_pred ccCCCCccchhhhccCCCcceeecccCcCc
Q 042439 678 FSFPNLERLSSSIVDLQNLTELYLEDCPKL 707 (766)
Q Consensus 678 ~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 707 (766)
++ +.++.+|..+..+++|+.|++++|+.-
T Consensus 269 s~-N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 269 YR-NQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CS-SCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred CC-CCCCcCCHHHhhccccCEEEecCCCCC
Confidence 88 478888888888888888888887643
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=3e-20 Score=191.90 Aligned_cols=176 Identities=11% Similarity=0.033 Sum_probs=98.2
Q ss_pred CCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccC-CCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEe
Q 042439 537 HQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGL-HNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWI 615 (766)
Q Consensus 537 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 615 (766)
++|++|++++|......+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|. ++.++....+++|++|++
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~L 198 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDL 198 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-CcccccccccccCCEEEC
Confidence 444444444443322222233344455555555554444333333 245555555555553 222333334556666666
Q ss_pred ccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCc--cchhhhccC
Q 042439 616 AGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLE--RLSSSIVDL 693 (766)
Q Consensus 616 ~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~l 693 (766)
++|. ...++..+..+++|++|++++| .+..+|..+ ..+++|+.|+++++ .+. .++.++..+
T Consensus 199 s~N~-----l~~l~~~~~~l~~L~~L~L~~N--~l~~l~~~~---------~~l~~L~~L~l~~N-~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 199 SSNK-----LAFMGPEFQSAAGVTWISLRNN--KLVLIEKAL---------RFSQNLEHFDLRGN-GFHCGTLRDFFSKN 261 (317)
T ss_dssp CSSC-----CCEECGGGGGGTTCSEEECTTS--CCCEECTTC---------CCCTTCCEEECTTC-CCBHHHHHHHHHTC
T ss_pred CCCc-----CCcchhhhcccCcccEEECcCC--cccchhhHh---------hcCCCCCEEEccCC-CccCcCHHHHHhcc
Confidence 6641 1122333677888888888886 455677655 46778888888885 454 667788889
Q ss_pred CCcceeecccCcCcccCCCCCc-ccccceeeecCChhH
Q 042439 694 QNLTELYLEDCPKLKYFPEKGL-PSSLLQLYIGGCPLI 730 (766)
Q Consensus 694 ~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~i~~~~~l 730 (766)
++|+.+++++|+.++....... .+.+....-.+|..+
T Consensus 262 ~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l 299 (317)
T 3o53_A 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299 (317)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCC
T ss_pred ccceEEECCCchhccCCchhccCCCceecccceeeccC
Confidence 9999999998777766544222 233333333445443
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=6.1e-19 Score=191.94 Aligned_cols=222 Identities=18% Similarity=0.183 Sum_probs=142.3
Q ss_pred CCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCC-CCCCCCCcceE
Q 042439 488 PPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPE-GGLPCAKLSKL 566 (766)
Q Consensus 488 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L 566 (766)
|+++++|++++|......+..|.++++|+.|++++|...+..+..+..+++|++|++++|. +..+|. .+..+++|++|
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEE
Confidence 3557777777777666666667777777777777775444445566777777777777774 344443 35567777777
Q ss_pred EeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCC--CCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEe
Q 042439 567 RIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEE--DGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRIS 644 (766)
Q Consensus 567 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~ 644 (766)
++++|.+....+..+..+++|++|++++|..++.++. ...+++|++|++++|. +.. .+ .+..+++|++|+++
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~--l~~---~~-~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN--IKD---MP-NLTPLVGLEELEMS 226 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC--CSS---CC-CCTTCTTCCEEECT
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc--ccc---cc-cccccccccEEECc
Confidence 7777775544445667777777777777666665553 3456777777777741 111 11 26677777777777
Q ss_pred ccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcCcccCCCCCc--ccccce
Q 042439 645 GCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPKLKYFPEKGL--PSSLLQ 721 (766)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~ 721 (766)
+| .+..+++.. +..+++|+.|++++ +.++.++. .+..+++|++|++++| .++.++...+ +++|++
T Consensus 227 ~N--~l~~~~~~~--------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 227 GN--HFPEIRPGS--------FHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp TS--CCSEECGGG--------GTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCE
T ss_pred CC--cCcccCccc--------ccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCE
Confidence 75 333443221 24566777777777 45665543 6677777777777775 5666665333 577777
Q ss_pred eeecCCh
Q 042439 722 LYIGGCP 728 (766)
Q Consensus 722 L~i~~~~ 728 (766)
|++++||
T Consensus 295 L~L~~Np 301 (452)
T 3zyi_A 295 LHLHHNP 301 (452)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 7777776
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=8.3e-19 Score=190.16 Aligned_cols=221 Identities=17% Similarity=0.190 Sum_probs=122.3
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCC-CCCCCCCcceEE
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPE-GGLPCAKLSKLR 567 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 567 (766)
++++.|++++|......+..|.++++|++|++++|...+..+..+..+++|++|++++| .+..++. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 44666666666655555555666666666666666433333445556666666666666 3334433 345566666666
Q ss_pred eccCcCccccCccCCCCCCCCeeEecCCCCCCCCCC--CCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEec
Q 042439 568 IHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEE--DGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISG 645 (766)
Q Consensus 568 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~ 645 (766)
+++|.+....+..+..+++|++|++++|..+..++. ...+++|++|++++|. +. .++ .+..+++|++|++++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~--l~---~~~-~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN--LR---EIP-NLTPLIKLDELDLSG 216 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC--CS---SCC-CCTTCSSCCEEECTT
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc--Cc---ccc-ccCCCcccCEEECCC
Confidence 666665444444556666666666666555554443 2445666666666641 11 111 255666666666666
Q ss_pred cCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcCcccCCCCCc--cccccee
Q 042439 646 CDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPKLKYFPEKGL--PSSLLQL 722 (766)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L 722 (766)
| .+..++... +..+++|+.|++++ +.++.++. .+..+++|++|++++| .++.++...+ +++|++|
T Consensus 217 N--~l~~~~~~~--------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 217 N--HLSAIRPGS--------FQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp S--CCCEECTTT--------TTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEE
T ss_pred C--ccCccChhh--------hccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEE
Confidence 5 333332211 23456666666666 35555543 5556666666666664 4555555322 5666666
Q ss_pred eecCCh
Q 042439 723 YIGGCP 728 (766)
Q Consensus 723 ~i~~~~ 728 (766)
++++||
T Consensus 285 ~L~~Np 290 (440)
T 3zyj_A 285 HLHHNP 290 (440)
T ss_dssp ECCSSC
T ss_pred EcCCCC
Confidence 666665
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=3.3e-22 Score=226.70 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=16.3
Q ss_pred CcccEEEeecCCCCcccCcccCCCCCccEEEecCC
Q 042439 358 CRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGC 392 (766)
Q Consensus 358 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~ 392 (766)
++|++|++++|...+.++..+..+++|++|++..+
T Consensus 211 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp TTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred CCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 45555555555333334444444455555554443
No 58
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=1.7e-21 Score=220.73 Aligned_cols=158 Identities=15% Similarity=0.170 Sum_probs=86.2
Q ss_pred CCCCcceEEEEecCC----CCCC-cc-------cc--CCCCCCeeEEEEecCCCCCCCC-CCC-CcCcccceeecCCCCc
Q 042439 96 PHEILEQFCISGYGG----TKFP-AW-------LG--DSSLPNLVTLKFENCDMCTALP-SVG-QLPSLKHLAVCGMSRV 159 (766)
Q Consensus 96 ~~~~L~~L~l~~~~~----~~lp-~~-------~~--~~~l~~L~~L~L~~~~~~~~l~-~l~-~l~~L~~L~L~~~~~~ 159 (766)
.+++|++|++.++.. ...| .| +. ...+++|++|+|++|.+....+ .+. .+++|++|++++|..+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 445888888887531 1112 11 10 0246788888888887443322 233 5778888888887655
Q ss_pred eecCc-ccccCCCCCCCCCccEEeccCccchhhhhccCCCccccccCcccceecccccc-cccC----CCCCCCCCccEE
Q 042439 160 KRLGS-EFYGNDPPIPFPCLETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCS-KLKG----PFPEHLPALEML 233 (766)
Q Consensus 160 ~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~-~l~~----~~p~~l~~L~~L 233 (766)
+..+. .+.+ .+++|++|++++|... +.. ...+......+++|++|++++|. .+.. .+...+++|+.|
T Consensus 144 ~~~~l~~~~~-----~~~~L~~L~L~~~~i~-~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L 216 (594)
T 2p1m_B 144 STDGLAAIAA-----TCRNLKELDLRESDVD-DVS-GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216 (594)
T ss_dssp EHHHHHHHHH-----HCTTCCEEECTTCEEE-CCC-GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEE
T ss_pred CHHHHHHHHH-----hCCCCCEEeCcCCccC-Ccc-hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEE
Confidence 44211 1111 1778888888887622 110 00022233456778888887764 1110 111235777777
Q ss_pred EEecCCCcc---cccCCCCccceEEEcCCC
Q 042439 234 VIEGCEELS---VSVSSLPALCKLQIGGCK 260 (766)
Q Consensus 234 ~l~~~~~l~---~~~~~~~~L~~L~l~~~~ 260 (766)
++++|..+. ..+..+++|++|.+..+.
T Consensus 217 ~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYT 246 (594)
T ss_dssp ECCTTSCHHHHHHHHHHCTTCSEEECSBCC
T ss_pred ecCCCCcHHHHHHHHhcCCcceEccccccc
Confidence 777774332 233446677777766654
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1.1e-18 Score=179.68 Aligned_cols=226 Identities=17% Similarity=0.095 Sum_probs=161.3
Q ss_pred CCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCC--cccccccCCCCCCEEEecCCCCccccCCCCCCCCCcce
Q 042439 488 PPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLK--NLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSK 565 (766)
Q Consensus 488 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 565 (766)
|+++++|++++|......+..+..+++|++|++++|.... ..+..+..+++|++|++++| .+..+|..+..+++|++
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH 105 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence 3568888888887664444457888889999998886432 22556667888999999888 45567766777888999
Q ss_pred EEeccCcCccccC-ccCCCCCCCCeeEecCCCCCCCCCC-CCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEE
Q 042439 566 LRIHGCERLEALP-KGLHNLTSLQELTIGRGVELPSLEE-DGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRI 643 (766)
Q Consensus 566 L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l 643 (766)
|++++|.+.+..+ ..+..+++|++|++++|......+. ...+++|++|++++|.. .. ...+..+..+++|++|++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~--~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF-QE--NFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE-GG--GEECSCCTTCTTCCEEEC
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc-cc--ccchhHHhhCcCCCEEEC
Confidence 9998887655443 4678888999999988865444433 35678899999988521 11 123445888999999999
Q ss_pred eccCCCCccCC-CCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcCcccCCC--CCccccc
Q 042439 644 SGCDDDMVSFP-PKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPKLKYFPE--KGLPSSL 719 (766)
Q Consensus 644 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~L 719 (766)
++| .+..++ ..+ ..+++|++|++++ +.++.++. .+..+++|++|++++|+.....+. ..++++|
T Consensus 183 s~n--~l~~~~~~~~---------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 183 SQC--QLEQLSPTAF---------NSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250 (306)
T ss_dssp TTS--CCCEECTTTT---------TTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred CCC--CcCCcCHHHh---------cCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence 987 344443 333 4678999999999 57777765 678899999999999754333333 1224689
Q ss_pred ceeeecCChh
Q 042439 720 LQLYIGGCPL 729 (766)
Q Consensus 720 ~~L~i~~~~~ 729 (766)
++|++++|+.
T Consensus 251 ~~L~L~~N~~ 260 (306)
T 2z66_A 251 AFLNLTQNDF 260 (306)
T ss_dssp CEEECTTCCE
T ss_pred CEEEccCCCe
Confidence 9999999864
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=9.1e-19 Score=184.04 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=39.9
Q ss_pred cCCCCCCCEEEeeeCCCCCcc-cccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCcc-CCCCCC
Q 042439 509 LDNNTSLETIDICYCGNLKNL-PSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKG-LHNLTS 586 (766)
Q Consensus 509 ~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~-~~~l~~ 586 (766)
+..+++|++|++++|...+.+ +..+..+++|++|++++|......|..+..+++|++|++++|.. +.+|.. +..+++
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~ 223 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSS 223 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTT
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhccc
Confidence 444555555555555333333 23444455555555555543333344444455555555555543 222221 223455
Q ss_pred CCeeEecCC
Q 042439 587 LQELTIGRG 595 (766)
Q Consensus 587 L~~L~l~~~ 595 (766)
|++|++++|
T Consensus 224 L~~L~L~~n 232 (353)
T 2z80_A 224 VECLELRDT 232 (353)
T ss_dssp EEEEEEESC
T ss_pred ccEEECCCC
Confidence 555555554
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=7.3e-18 Score=182.73 Aligned_cols=225 Identities=16% Similarity=0.138 Sum_probs=165.9
Q ss_pred CceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCccccc
Q 042439 453 SLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSG 532 (766)
Q Consensus 453 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~ 532 (766)
++++.|+++++ .++.+ +...|... ++|++|++++|......+..|.++++|++|++++|......+..
T Consensus 64 ~~l~~L~L~~n-~i~~~-~~~~~~~l----------~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQII-KVNSFKHL----------RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131 (440)
T ss_dssp TTCSEEECCSC-CCCEE-CTTTTSSC----------SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred CCCcEEEccCC-cCCee-CHHHhhCC----------CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhH
Confidence 36777888775 34444 33333332 77888888888877766778888999999999998644333446
Q ss_pred ccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCc-cCCCCCCCCeeEecCCCCCCCCCCCCCCCCcc
Q 042439 533 LHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPK-GLHNLTSLQELTIGRGVELPSLEEDGLPTNLH 611 (766)
Q Consensus 533 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~ 611 (766)
+..+++|++|++++|......+..+..+++|+.|++++|...+.++. .+..+++|++|++++| .++.++....+++|+
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~ 210 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLD 210 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCC
T ss_pred hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccC
Confidence 78889999999999854433334667788999999998877777754 5788999999999988 555677778888999
Q ss_pred eeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hh
Q 042439 612 SLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SI 690 (766)
Q Consensus 612 ~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~ 690 (766)
+|++++|. +. ...+..+..+++|+.|++++| .+..++... +..+++|+.|++++ +.++.++. .+
T Consensus 211 ~L~Ls~N~--l~--~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~ 275 (440)
T 3zyj_A 211 ELDLSGNH--LS--AIRPGSFQGLMHLQKLWMIQS--QIQVIERNA--------FDNLQSLVEINLAH-NNLTLLPHDLF 275 (440)
T ss_dssp EEECTTSC--CC--EECTTTTTTCTTCCEEECTTC--CCCEECTTS--------STTCTTCCEEECTT-SCCCCCCTTTT
T ss_pred EEECCCCc--cC--ccChhhhccCccCCEEECCCC--ceeEEChhh--------hcCCCCCCEEECCC-CCCCccChhHh
Confidence 99999862 22 222344888999999999987 444554322 34678899999999 58888876 56
Q ss_pred ccCCCcceeecccCc
Q 042439 691 VDLQNLTELYLEDCP 705 (766)
Q Consensus 691 ~~l~~L~~L~l~~c~ 705 (766)
..+++|++|++++|+
T Consensus 276 ~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 276 TPLHHLERIHLHHNP 290 (440)
T ss_dssp SSCTTCCEEECCSSC
T ss_pred ccccCCCEEEcCCCC
Confidence 788999999999876
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=183.51 Aligned_cols=226 Identities=19% Similarity=0.146 Sum_probs=124.8
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccc-cccCCCCCCEEEecCCCCccccCC--CCCCCCCcce
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPS-GLHNLHQLQEISIGRCGNLESFPE--GGLPCAKLSK 565 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~l~~--~~~~~~~L~~ 565 (766)
++|++|++++|...+..+..+.++++|++|++++|... .+|. .+..+++|++|++++| .+..+|. .+..+++|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQI 153 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcE
Confidence 34444444444443333444555666666666665433 3333 2555666666666665 3334443 3445566666
Q ss_pred EEeccCcCcccc-CccCCCCCCCCeeEecCCCCCCCC-CCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEE
Q 042439 566 LRIHGCERLEAL-PKGLHNLTSLQELTIGRGVELPSL-EEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRI 643 (766)
Q Consensus 566 L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l 643 (766)
|++++|...+.+ +..+..+++|++|++++|...... .....+++|++|++++|. +...+... +..+++|+.|++
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~--l~~~~~~~--~~~~~~L~~L~L 229 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ--HILLLEIF--VDVTSSVECLEL 229 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC--STTHHHHH--HHHTTTEEEEEE
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc--cccchhhh--hhhcccccEEEC
Confidence 666666433333 345556666666666666433322 223445666666666642 11111111 445678888888
Q ss_pred eccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCc-----cchhhhccCCCcceeecccCcCcccCCCCC--cc
Q 042439 644 SGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLE-----RLSSSIVDLQNLTELYLEDCPKLKYFPEKG--LP 716 (766)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~ 716 (766)
++|. +..++... .......+.++.++++++ .+. .+|.++..+++|++|++++| .++.+|... .+
T Consensus 230 ~~n~--l~~~~~~~-----l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l 300 (353)
T 2z80_A 230 RDTD--LDTFHFSE-----LSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRL 300 (353)
T ss_dssp ESCB--CTTCCCC-----------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred CCCc--cccccccc-----cccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcC
Confidence 8763 22222110 000123455666777664 333 46777888999999999985 677888743 37
Q ss_pred cccceeeecCChh
Q 042439 717 SSLLQLYIGGCPL 729 (766)
Q Consensus 717 ~~L~~L~i~~~~~ 729 (766)
++|++|++++|+.
T Consensus 301 ~~L~~L~L~~N~~ 313 (353)
T 2z80_A 301 TSLQKIWLHTNPW 313 (353)
T ss_dssp TTCCEEECCSSCB
T ss_pred CCCCEEEeeCCCc
Confidence 8899999999863
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=8.5e-19 Score=178.29 Aligned_cols=201 Identities=14% Similarity=0.054 Sum_probs=101.7
Q ss_pred CcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccC-CCCCCCCcceEEEccCCCCCccccccccCcchhHHHH
Q 042439 358 CRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFP-EVALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEIL 436 (766)
Q Consensus 358 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l 436 (766)
++|++|++++|.+.+..+..+..+++|++|++++|......+ ....+++|++|++++|..+..++..
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~------------ 99 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA------------ 99 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT------------
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH------------
Confidence 577777777777655555567777777777777774433323 2344666777777666544443221
Q ss_pred HHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCC
Q 042439 437 MEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLE 516 (766)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 516 (766)
.+..+++|++|+++++ ......+..+..+++|+
T Consensus 100 -----------~~~~l~~L~~L~l~~n------------------------------------~l~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 100 -----------TFHGLGRLHTLHLDRC------------------------------------GLQELGPGLFRGLAALQ 132 (285)
T ss_dssp -----------TTTTCTTCCEEECTTS------------------------------------CCCCCCTTTTTTCTTCC
T ss_pred -----------HhcCCcCCCEEECCCC------------------------------------cCCEECHhHhhCCcCCC
Confidence 1222444555555443 33333333444455555
Q ss_pred EEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCC-CCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCC
Q 042439 517 TIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPE-GGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRG 595 (766)
Q Consensus 517 ~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 595 (766)
+|++++|...+..+..+..+++|++|++++|. +..++. .+..+++|+.|++++|.+.+..|..+..+++|++|++++|
T Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 55555554332222334445555555555552 233332 2444555555555555544444455555555555555555
Q ss_pred CCCCCCCC-CCCCCCcceeEeccc
Q 042439 596 VELPSLEE-DGLPTNLHSLWIAGN 618 (766)
Q Consensus 596 ~~l~~~~~-~~~~~~L~~L~l~~N 618 (766)
......+. ...+++|++|++++|
T Consensus 212 ~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 212 NLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred cCCcCCHHHcccCcccCEEeccCC
Confidence 32222111 234455555555554
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=2.3e-18 Score=177.18 Aligned_cols=135 Identities=17% Similarity=0.127 Sum_probs=66.0
Q ss_pred hcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCcc-ccCCCCCCCCCcceEEeccCcCccccCccCCCCCC
Q 042439 508 RLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLE-SFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTS 586 (766)
Q Consensus 508 ~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~ 586 (766)
.+..+++|++|++++|...+..+..+..+++|++|++++|...+ .+|..+..+++|+.|++++|.+.+..|..+..+++
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 200 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence 34445555555555554333334444555555555555553322 24444555555555555555544444455555555
Q ss_pred CCeeEecCCCCCCCCC-CCCCCCCcceeEeccccccchhhhhcccccCCCC-CCcEEEEecc
Q 042439 587 LQELTIGRGVELPSLE-EDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFS-SLRQLRISGC 646 (766)
Q Consensus 587 L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~-~L~~L~l~~~ 646 (766)
|++|++++|......+ ....+++|++|++++|. .....+..+..++ +|++|++++|
T Consensus 201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~----l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH----IMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC----CCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CCEEECCCCccCccChhhccCcccCCEeECCCCC----CcccCHHHHHhhhccCCEEEccCC
Confidence 5555555553222211 12344555555555531 1111222355553 6677777665
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=3.3e-17 Score=182.63 Aligned_cols=113 Identities=23% Similarity=0.238 Sum_probs=79.6
Q ss_pred CCcceEEEEecCCCCCCccccCCCCCCeeEEEEecCCCCCCCCCCCCcCcccceeecCCCCceecCcccccCCCCCCCCC
Q 042439 98 EILEQFCISGYGGTKFPAWLGDSSLPNLVTLKFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPC 177 (766)
Q Consensus 98 ~~L~~L~l~~~~~~~lp~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 177 (766)
.++++|+++++.+..+|..+ .++|++|+|++|.+ +.+|. .+++|++|++++|. ++.++. .+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l----~~~L~~L~L~~N~l-~~lp~--~l~~L~~L~Ls~N~-l~~lp~---------~l~~ 102 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCL----PAHITTLVIPDNNL-TSLPA--LPPELRTLEVSGNQ-LTSLPV---------LPPG 102 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCC----CTTCSEEEECSCCC-SCCCC--CCTTCCEEEECSCC-CSCCCC---------CCTT
T ss_pred CCCcEEEecCCCcCccChhh----CCCCcEEEecCCCC-CCCCC--cCCCCCEEEcCCCc-CCcCCC---------CCCC
Confidence 36889999999888888866 37899999999985 46665 57889999998864 444443 2788
Q ss_pred ccEEeccCccchhhhhccCCCccccccCcccceecccccccccCCCCCCCCCccEEEEecCC
Q 042439 178 LETLIFENMREWEDWISHGSSQRVVEGFPKLRELHILRCSKLKGPFPEHLPALEMLVIEGCE 239 (766)
Q Consensus 178 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~p~~l~~L~~L~l~~~~ 239 (766)
|++|++++|.... ++. .+++|+.|++++|. ++ .+|..+++|++|++++|.
T Consensus 103 L~~L~Ls~N~l~~-------l~~---~l~~L~~L~L~~N~-l~-~lp~~l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 103 LLELSIFSNPLTH-------LPA---LPSGLCKLWIFGNQ-LT-SLPVLPPGLQELSVSDNQ 152 (622)
T ss_dssp CCEEEECSCCCCC-------CCC---CCTTCCEEECCSSC-CS-CCCCCCTTCCEEECCSSC
T ss_pred CCEEECcCCcCCC-------CCC---CCCCcCEEECCCCC-CC-cCCCCCCCCCEEECcCCc
Confidence 8888888876321 222 56778888887764 66 566655666666665553
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=2.5e-18 Score=174.86 Aligned_cols=204 Identities=20% Similarity=0.224 Sum_probs=151.3
Q ss_pred CCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCcccc-CCCCCCCCCcceE
Q 042439 488 PPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESF-PEGGLPCAKLSKL 566 (766)
Q Consensus 488 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L 566 (766)
|+++++|++++|......+..+..+++|++|++++|...+..|..+..+++|++|++++|..+..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 467999999988877766677888999999999998655554778888999999999998756666 5567778899999
Q ss_pred EeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCC-CCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEec
Q 042439 567 RIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEE-DGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISG 645 (766)
Q Consensus 567 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~ 645 (766)
++++|.+.+..|..+..+++|++|++++|......+. .+.+++|++|++++|. +.... +..+..+++|+.|++++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~--~~~~~~l~~L~~L~l~~ 186 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR--ISSVP--ERAFRGLHSLDRLLLHQ 186 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCEEC--TTTTTTCTTCCEEECCS
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc--ccccC--HHHhcCccccCEEECCC
Confidence 9999987777677788899999999998854443332 4567888888888851 22111 12377788888888888
Q ss_pred cCCCCccC-CCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcCc
Q 042439 646 CDDDMVSF-PPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPKL 707 (766)
Q Consensus 646 ~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l 707 (766)
|. +..+ |..+ ..+++|+.|++++ +.++.++. .+..+++|++|++++|+..
T Consensus 187 n~--l~~~~~~~~---------~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 187 NR--VAHVHPHAF---------RDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp SC--CCEECTTTT---------TTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred Cc--ccccCHhHc---------cCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 63 3333 3333 4567888888888 47777665 5777888888888887643
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=4.5e-18 Score=185.06 Aligned_cols=200 Identities=20% Similarity=0.189 Sum_probs=91.9
Q ss_pred CcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCC--CCCCCCcceEEEccCCCCCccccccccCcchhHHH
Q 042439 358 CRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPE--VALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEI 435 (766)
Q Consensus 358 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 435 (766)
++|++|++++|.+.+..+..+..+++|++|++++|.. +.++. ...+++|++|++++|. +..++..
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~----------- 165 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNP-IESIPSY----------- 165 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SBCCTTTSSSCTTCCEEECCSCC-CCEECTT-----------
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC-CccChhhhcccCCCCEEECCCCC-cceeCHh-----------
Confidence 5566666666655444445555566666666666532 23332 2335566666665554 2222211
Q ss_pred HHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCC
Q 042439 436 LMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSL 515 (766)
Q Consensus 436 l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 515 (766)
.+..+++|++|++++|..+..+ +...+... ++|++|++++|.... +| .+..+++|
T Consensus 166 ------------~~~~l~~L~~L~l~~~~~l~~i-~~~~~~~l----------~~L~~L~L~~n~l~~-~~-~~~~l~~L 220 (452)
T 3zyi_A 166 ------------AFNRVPSLMRLDLGELKKLEYI-SEGAFEGL----------FNLKYLNLGMCNIKD-MP-NLTPLVGL 220 (452)
T ss_dssp ------------TTTTCTTCCEEECCCCTTCCEE-CTTTTTTC----------TTCCEEECTTSCCSS-CC-CCTTCTTC
T ss_pred ------------HHhcCCcccEEeCCCCCCcccc-ChhhccCC----------CCCCEEECCCCcccc-cc-cccccccc
Confidence 1233455555555555544444 32222221 445555555444332 12 23444445
Q ss_pred CEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCC
Q 042439 516 ETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRG 595 (766)
Q Consensus 516 ~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 595 (766)
+.|++++|...+..|..+..+++|++|++++|......+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus 221 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 55555554433333444444555555555544333333333444445555555554433333333444444444444444
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=7e-18 Score=184.43 Aligned_cols=244 Identities=11% Similarity=0.037 Sum_probs=179.0
Q ss_pred HhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCCCCCCCCcceEEEccCCCCCccccccccCc
Q 042439 350 QQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPEVALPSKLRKIEICSCDALKSLPEAWMCDT 429 (766)
Q Consensus 350 ~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 429 (766)
+..+...+++|++|+|++|.+.+..|..+..+++|++|+|++|...+..+ ...+++|++|++++|. +..++.
T Consensus 26 l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~------ 97 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV------ 97 (487)
T ss_dssp HHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE------
T ss_pred HHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC------
Confidence 33344445799999999999877777789999999999999996554444 7779999999999986 333332
Q ss_pred chhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhc
Q 042439 430 NSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERL 509 (766)
Q Consensus 430 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~ 509 (766)
.++|+.|++++|. +..+ +... +++|++|++++|......|..+
T Consensus 98 ----------------------~~~L~~L~L~~N~-l~~~-~~~~-------------l~~L~~L~L~~N~l~~~~~~~~ 140 (487)
T 3oja_A 98 ----------------------GPSIETLHAANNN-ISRV-SCSR-------------GQGKKNIYLANNKITMLRDLDE 140 (487)
T ss_dssp ----------------------CTTCCEEECCSSC-CCCE-EECC-------------CSSCEEEECCSSCCCSGGGBCG
T ss_pred ----------------------CCCcCEEECcCCc-CCCC-Cccc-------------cCCCCEEECCCCCCCCCCchhh
Confidence 3589999999863 4433 2111 2679999999999888888888
Q ss_pred CCCCCCCEEEeeeCCCCCccccccc-CCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCC
Q 042439 510 DNNTSLETIDICYCGNLKNLPSGLH-NLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQ 588 (766)
Q Consensus 510 ~~l~~L~~L~l~~~~~l~~lp~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 588 (766)
+.+++|+.|++++|...+..|..+. .+++|++|++++|. +..+|. ...+++|+.|++++|.+.+ +|..+..+++|+
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~ 217 (487)
T 3oja_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVT 217 (487)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCS
T ss_pred cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCcc
Confidence 8899999999999977776677775 78999999999985 445554 3357899999999998665 555688899999
Q ss_pred eeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEe
Q 042439 589 ELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRIS 644 (766)
Q Consensus 589 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~ 644 (766)
.|++++|.....++....+++|+.|++++|..... ..+..+..+++|+.++++
T Consensus 218 ~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~---~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 218 WISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH---HHHHHHTTCHHHHHHHHH
T ss_pred EEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc---chHHHHHhCCCCcEEecc
Confidence 99999986554344456677888888888522211 122225566666666664
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=1.9e-18 Score=177.91 Aligned_cols=201 Identities=15% Similarity=0.087 Sum_probs=132.9
Q ss_pred CCCCCCEEEeeeCCCCCcccccc--cCCCCCCEEEecCCCCccccCCCCCCC-----CCcceEEeccCcCccccCccCCC
Q 042439 511 NNTSLETIDICYCGNLKNLPSGL--HNLHQLQEISIGRCGNLESFPEGGLPC-----AKLSKLRIHGCERLEALPKGLHN 583 (766)
Q Consensus 511 ~l~~L~~L~l~~~~~l~~lp~~l--~~l~~L~~L~l~~~~~l~~l~~~~~~~-----~~L~~L~l~~~~~~~~~p~~~~~ 583 (766)
++++|++|++++|...+.+|..+ ..+++|++|++++|.. ..+|..+..+ ++|++|++++|.+.+..|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC-SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC-cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 56777777777776666666655 6777777777777743 3335444333 67778888777766666667777
Q ss_pred CCCCCeeEecCCCCCCC---CCCC--CCCCCcceeEeccccccchhhhhcc-cccCCCCCCcEEEEeccCCCCccCC-CC
Q 042439 584 LTSLQELTIGRGVELPS---LEED--GLPTNLHSLWIAGNMEIWKSTIEWG-RGFHRFSSLRQLRISGCDDDMVSFP-PK 656 (766)
Q Consensus 584 l~~L~~L~l~~~~~l~~---~~~~--~~~~~L~~L~l~~N~~~l~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~ 656 (766)
+++|++|++++|...+. ++.. +.+++|++|++++|. +...+..+ ..+..+++|++|++++|. +...+ ..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~ 247 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG--METPSGVCSALAAARVQLQGLDLSHNS--LRDAAGAP 247 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC--CCCHHHHHHHHHHTTCCCSEEECTTSC--CCSSCCCS
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc--CcchHHHHHHHHhcCCCCCEEECCCCc--CCcccchh
Confidence 77888888877764332 1122 556778888887752 22111111 114577888888888863 33322 11
Q ss_pred cccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCCCCcccccceeeecCCh
Q 042439 657 ADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPEKGLPSSLLQLYIGGCP 728 (766)
Q Consensus 657 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~~~ 728 (766)
. +..+++|++|++++ +.++.+|..+. ++|++|++++| +++.+|....+++|++|++++|+
T Consensus 248 ~--------~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 248 S--------CDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp C--------CCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred h--------hhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 1 13467888888888 57888887555 88889999885 67777765457888888888886
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=9.3e-18 Score=173.19 Aligned_cols=242 Identities=14% Similarity=0.067 Sum_probs=143.9
Q ss_pred cCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCccc
Q 042439 451 TSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLP 530 (766)
Q Consensus 451 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp 530 (766)
.+++|++|+++++ .++.+ + +..+..+ ++|++|++++|...+..+ +..+++|++|++++|. +..++
T Consensus 32 ~~~~L~~L~L~~n-~l~~~-~----~~~~~~l------~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~-l~~l~ 96 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQI-S----AADLAPF------TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL 96 (317)
T ss_dssp TGGGCSEEECTTS-CCCCC-C----HHHHTTC------TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE-EEEEE
T ss_pred cCCCCCEEECcCC-ccCcC-C----HHHhhCC------CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc-ccccc
Confidence 3667777777775 33322 1 1222222 667777777776655443 6677777777777764 33332
Q ss_pred ccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCC-C-CCCC
Q 042439 531 SGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEE-D-GLPT 608 (766)
Q Consensus 531 ~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~-~~~~ 608 (766)
..++|++|++++|.. ..++.. .+++|+.|++++|.+.+..+..+..+++|++|++++|......+. . ..++
T Consensus 97 ----~~~~L~~L~l~~n~l-~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 97 ----VGPSIETLHAANNNI-SRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp ----ECTTCCEEECCSSCC-SEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred ----CCCCcCEEECCCCcc-CCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 247777777777744 333322 245777777777776665555667777777777777743332222 1 2456
Q ss_pred CcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh
Q 042439 609 NLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS 688 (766)
Q Consensus 609 ~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 688 (766)
+|++|++++|. +.. ++ ....+++|++|++++| .+..+|+.+ ..+++|+.|++++ +.++.+|.
T Consensus 170 ~L~~L~L~~N~--l~~---~~-~~~~l~~L~~L~Ls~N--~l~~l~~~~---------~~l~~L~~L~L~~-N~l~~l~~ 231 (317)
T 3o53_A 170 TLEHLNLQYNF--IYD---VK-GQVVFAKLKTLDLSSN--KLAFMGPEF---------QSAAGVTWISLRN-NKLVLIEK 231 (317)
T ss_dssp TCCEEECTTSC--CCE---EE-CCCCCTTCCEEECCSS--CCCEECGGG---------GGGTTCSEEECTT-SCCCEECT
T ss_pred cCCEEECCCCc--Ccc---cc-cccccccCCEEECCCC--cCCcchhhh---------cccCcccEEECcC-Ccccchhh
Confidence 77777777742 111 11 1334677777777776 455555544 3556777777777 46777777
Q ss_pred hhccCCCcceeecccCcCc-ccCCC-CCcccccceeeecCChhHHH
Q 042439 689 SIVDLQNLTELYLEDCPKL-KYFPE-KGLPSSLLQLYIGGCPLIAE 732 (766)
Q Consensus 689 ~~~~l~~L~~L~l~~c~~l-~~l~~-~~~~~~L~~L~i~~~~~l~~ 732 (766)
.+..+++|++|++++|+.. ..++. ....++|+.+++.+|+.++.
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 6777777777777776543 22222 11246677777776666654
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1.2e-17 Score=182.58 Aligned_cols=189 Identities=14% Similarity=0.067 Sum_probs=91.8
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEe
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRI 568 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 568 (766)
++|++|++++|...+..| +..+++|++|++++|. ++.+|. .++|++|++++|.... ++.. .+++|+.|++
T Consensus 58 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L~~N~l~~-~~~~--~l~~L~~L~L 127 (487)
T 3oja_A 58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAANNNISR-VSCS--RGQGKKNIYL 127 (487)
T ss_dssp TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEECCSSCCCC-EEEC--CCSSCEEEEC
T ss_pred CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC----CCCcCEEECcCCcCCC-CCcc--ccCCCCEEEC
Confidence 556666666555444333 5555566666666553 222221 2556666666553322 2221 2345666666
Q ss_pred ccCcCccccCccCCCCCCCCeeEecCCCCCCCCCC-C-CCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEecc
Q 042439 569 HGCERLEALPKGLHNLTSLQELTIGRGVELPSLEE-D-GLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGC 646 (766)
Q Consensus 569 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~-~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~ 646 (766)
++|.+.+..|..++.+++|++|++++|......+. . ..+++|++|++++|. +... + ....+++|+.|++++|
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~--l~~~---~-~~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF--IYDV---K-GQVVFAKLKTLDLSSN 201 (487)
T ss_dssp CSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC--CCEE---E-CCCCCTTCCEEECCSS
T ss_pred CCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc--cccc---c-ccccCCCCCEEECCCC
Confidence 66555555455555555666666665543332221 1 134555555555531 1111 1 1334555555555554
Q ss_pred CCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCc
Q 042439 647 DDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCP 705 (766)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 705 (766)
.+..+|+.+ ..+++|+.|++++ +.+..+|..+..+++|+.|++++|+
T Consensus 202 --~l~~~~~~~---------~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 202 --KLAFMGPEF---------QSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp --CCCEECGGG---------GGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred --CCCCCCHhH---------cCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCC
Confidence 333444333 2345555555555 3555555555555555555555544
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=5.6e-17 Score=160.02 Aligned_cols=201 Identities=17% Similarity=0.159 Sum_probs=125.9
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccc-cccCCCCCCEEEecCCCCccccCC-CCCCCCCcceE
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPS-GLHNLHQLQEISIGRCGNLESFPE-GGLPCAKLSKL 566 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L 566 (766)
+++++|++++|......+..|+.+++|++|++++|..++.++. .+..+++|++|++++|..+..++. .+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 4577777777665554455666677777777777653444433 556666777777766224444443 34456666666
Q ss_pred EeccCcCccccCccCCCCCCCC---eeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCc-EEE
Q 042439 567 RIHGCERLEALPKGLHNLTSLQ---ELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLR-QLR 642 (766)
Q Consensus 567 ~l~~~~~~~~~p~~~~~l~~L~---~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~-~L~ 642 (766)
++++|.+.+ +|. +..+++|+ +|++++|+.++.++. ..+..+++|+ +|+
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~--------------------------~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV--------------------------NAFQGLCNETLTLK 162 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT--------------------------TTTTTTBSSEEEEE
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCc--------------------------ccccchhcceeEEE
Confidence 666665433 443 55555555 555555532322221 1166777888 888
Q ss_pred EeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccC-CCcceeecccCcCcccCCCCCcccccc
Q 042439 643 ISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDL-QNLTELYLEDCPKLKYFPEKGLPSSLL 720 (766)
Q Consensus 643 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~L~ 720 (766)
+++| .+..+|... +.. ++|+.|+++++..++.++. .+..+ ++|++|++++ +.++.+|.. .+++|+
T Consensus 163 l~~n--~l~~i~~~~--------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~ 229 (239)
T 2xwt_C 163 LYNN--GFTSVQGYA--------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLK 229 (239)
T ss_dssp CCSC--CCCEECTTT--------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCS
T ss_pred cCCC--CCcccCHhh--------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCc
Confidence 8776 455666543 123 6888888888545888865 67778 8999999998 467788775 567899
Q ss_pred eeeecCChhH
Q 042439 721 QLYIGGCPLI 730 (766)
Q Consensus 721 ~L~i~~~~~l 730 (766)
+|++++++.|
T Consensus 230 ~L~l~~~~~l 239 (239)
T 2xwt_C 230 ELIARNTWTL 239 (239)
T ss_dssp EEECTTC---
T ss_pred eeeccCccCC
Confidence 9999888653
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=7.3e-18 Score=173.58 Aligned_cols=227 Identities=16% Similarity=0.110 Sum_probs=113.0
Q ss_pred ccCCCCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCC-CcccCcccC-------CCCCccEEEecCC
Q 042439 321 LQDSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQG-LVKLPQSSL-------SLSSLREIEIYGC 392 (766)
Q Consensus 321 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~-~~~~~~~~~-------~l~~L~~L~L~~~ 392 (766)
+...++|++|+++++.- .++... +..|+.|++++|.+ ...+|..+. .+++|++|++++|
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~-----------~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 105 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQF-----------TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL 105 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHH-----------HHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE
T ss_pred EccCCCceeEeeccccc--ccHHHH-----------HHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC
Confidence 44556677777776543 444321 12366777777765 234444443 6788888888888
Q ss_pred CCCcccCCC---CCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCcccc
Q 042439 393 WSLVSFPEV---ALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCI 469 (766)
Q Consensus 393 ~~l~~~~~~---~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 469 (766)
...+.+|.. ..+++|++|++++|..... |..+..... ...++|++|+++++. +..+
T Consensus 106 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~-------------------~~~~~L~~L~L~~N~-l~~~ 164 (312)
T 1wwl_A 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQ-------------------WLKPGLKVLSIAQAH-SLNF 164 (312)
T ss_dssp BCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT-------------------TCCTTCCEEEEESCS-CCCC
T ss_pred cccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHH-------------------hhcCCCcEEEeeCCC-Cccc
Confidence 666556642 4577888888887764333 432110000 002456666666642 2222
Q ss_pred ccCCCCccccccccccCCCCCcceeeecCCCchhh--hHhhc--CCCCCCCEEEeeeCCCCC--cccc-cccCCCCCCEE
Q 042439 470 FSKNELPATLESLEVGNLPPSLKSLHVLSCSKLES--IAERL--DNNTSLETIDICYCGNLK--NLPS-GLHNLHQLQEI 542 (766)
Q Consensus 470 ~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~--~~l~~L~~L~l~~~~~l~--~lp~-~l~~l~~L~~L 542 (766)
+...+.. .++|++|++++|...+. ++..+ +.+++|++|++++|...+ .++. .+..+++|++|
T Consensus 165 -~~~~~~~----------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 165 -SCEQVRV----------FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233 (312)
T ss_dssp -CTTTCCC----------CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred -hHHHhcc----------CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence 1111111 14566666665554433 22223 555666666666654321 1111 12345556666
Q ss_pred EecCCCCccccC-CCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCC
Q 042439 543 SIGRCGNLESFP-EGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRG 595 (766)
Q Consensus 543 ~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 595 (766)
++++|......| ..+..+++|++|++++|.+. .+|..+. ++|++|++++|
T Consensus 234 ~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYN 284 (312)
T ss_dssp ECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSS
T ss_pred ECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCC
Confidence 666554333232 12233455555555555533 4444333 45555555554
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=3e-16 Score=159.10 Aligned_cols=199 Identities=17% Similarity=0.105 Sum_probs=143.4
Q ss_pred cccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCc
Q 042439 449 RYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKN 528 (766)
Q Consensus 449 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 528 (766)
+..++++++++++++ .++.+ +.+ +|+++++|++++|......+..+..+++|+.|++++|. +..
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~i-p~~-------------~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~ 69 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTAL-PPD-------------LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTK 69 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSC-CSC-------------CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCE
T ss_pred ccccCCccEEECCCC-CCCcC-CCC-------------CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCc
Confidence 455778999999874 45544 322 34679999999999887778889999999999999986 555
Q ss_pred ccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCC-CCCC
Q 042439 529 LPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEE-DGLP 607 (766)
Q Consensus 529 lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~ 607 (766)
++.. ..+++|++|++++| .+..+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+. ...+
T Consensus 70 ~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 147 (290)
T 1p9a_G 70 LQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147 (290)
T ss_dssp EECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred ccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc
Confidence 5543 77899999999998 5568888888889999999999987766667788999999999999854433332 2456
Q ss_pred CCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccC
Q 042439 608 TNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSF 680 (766)
Q Consensus 608 ~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 680 (766)
++|+.|++++|. +...+ +..+..+++|+.|++++| .+..+|..+ ...++|+.+++.++
T Consensus 148 ~~L~~L~L~~N~--l~~l~--~~~~~~l~~L~~L~L~~N--~l~~ip~~~---------~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 148 PKLEKLSLANNN--LTELP--AGLLNGLENLDTLLLQEN--SLYTIPKGF---------FGSHLLPFAFLHGN 205 (290)
T ss_dssp TTCCEEECTTSC--CSCCC--TTTTTTCTTCCEEECCSS--CCCCCCTTT---------TTTCCCSEEECCSC
T ss_pred cCCCEEECCCCc--CCccC--HHHhcCcCCCCEEECCCC--cCCccChhh---------cccccCCeEEeCCC
Confidence 777777777752 22111 112566777777777776 455666654 23456777777763
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=8e-17 Score=162.81 Aligned_cols=204 Identities=18% Similarity=0.105 Sum_probs=139.3
Q ss_pred CCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceE
Q 042439 487 LPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKL 566 (766)
Q Consensus 487 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 566 (766)
+|+++++|++++|......+..+..+++|++|++++|...+..+..+..+++|++|++++|......+..+..+++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 34678889998887766666678888899999999886444444567888899999999886554444567778899999
Q ss_pred EeccCcCccccCccCCCCCCCCeeEecCCCCCC-C-CCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCc----E
Q 042439 567 RIHGCERLEALPKGLHNLTSLQELTIGRGVELP-S-LEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLR----Q 640 (766)
Q Consensus 567 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~-~-~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~----~ 640 (766)
++++|.+.+..+..+..+++|++|++++|.... . ......+++|++|++++|.. .... +..+..+++|+ .
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l--~~~~--~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI--QSIY--CTDLRVLHQMPLLNLS 181 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC--CEEC--GGGGHHHHTCTTCCEE
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC--CcCC--HHHhhhhhhcccccee
Confidence 999888766555568888889999988885433 1 22345667888888887521 1111 11244444444 7
Q ss_pred EEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcC
Q 042439 641 LRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPK 706 (766)
Q Consensus 641 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~ 706 (766)
|++++| .+..++... ....+|++|++++ +.++.+|. .+..+++|++|++++|+.
T Consensus 182 L~ls~n--~l~~~~~~~---------~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 182 LDLSLN--PMNFIQPGA---------FKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp EECCSS--CCCEECTTS---------SCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred eecCCC--cccccCccc---------cCCCcccEEECCC-CceeecCHhHhcccccccEEEccCCcc
Confidence 778776 445555433 1334788888887 46777776 456778888888887653
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=1.6e-16 Score=156.70 Aligned_cols=151 Identities=18% Similarity=0.219 Sum_probs=110.4
Q ss_pred CCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhh-hHhhcCCCCCCCEEEeeeCCCCCccc
Q 042439 452 SSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLES-IAERLDNNTSLETIDICYCGNLKNLP 530 (766)
Q Consensus 452 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~lp 530 (766)
.+++++|+++++ .++.+ +...+... ++|++|++++|...+. .+..|..+++|++|++++|..+..++
T Consensus 30 ~~~l~~L~l~~n-~l~~i-~~~~~~~l----------~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 30 PPSTQTLKLIET-HLRTI-PSHAFSNL----------PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CTTCCEEEEESC-CCSEE-CTTTTTTC----------TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred CCcccEEEEeCC-cceEE-CHHHccCC----------CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 348999999996 46665 44444332 8899999999974444 44578999999999999933455554
Q ss_pred -ccccCCCCCCEEEecCCCCccccCCCCCCCCCcc---eEEeccCcCccccC-ccCCCCCCCC-eeEecCCCCCCCCCCC
Q 042439 531 -SGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLS---KLRIHGCERLEALP-KGLHNLTSLQ-ELTIGRGVELPSLEED 604 (766)
Q Consensus 531 -~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~---~L~l~~~~~~~~~p-~~~~~l~~L~-~L~l~~~~~l~~~~~~ 604 (766)
..+..+++|++|++++|. +..+|. +..+++|+ .|++++|+....+| ..+..+++|+ +|++++|... .++..
T Consensus 98 ~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~ 174 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY 174 (239)
T ss_dssp TTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTT
T ss_pred HHHhCCCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHh
Confidence 567889999999999995 566887 77788888 99999993344454 5688999999 9999988533 33321
Q ss_pred -CCCCCcceeEecc
Q 042439 605 -GLPTNLHSLWIAG 617 (766)
Q Consensus 605 -~~~~~L~~L~l~~ 617 (766)
...++|++|++++
T Consensus 175 ~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 175 AFNGTKLDAVYLNK 188 (239)
T ss_dssp TTTTCEEEEEECTT
T ss_pred hcCCCCCCEEEcCC
Confidence 2224566666665
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=164.72 Aligned_cols=225 Identities=13% Similarity=0.054 Sum_probs=149.5
Q ss_pred CcceeeecCCCchh----hhHhhcCCCCCCCEEEeeeCCCCCcccccc--cCCCCCCEEEecCCCCccccC----CCCCC
Q 042439 490 SLKSLHVLSCSKLE----SIAERLDNNTSLETIDICYCGNLKNLPSGL--HNLHQLQEISIGRCGNLESFP----EGGLP 559 (766)
Q Consensus 490 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l--~~l~~L~~L~l~~~~~l~~l~----~~~~~ 559 (766)
.++.+.+.++.... .+.. +..+++|++|++++|...+..|..+ ..+++|++|++++|......+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 35556666555433 1111 2224568888888887666777666 778888888888886554333 12335
Q ss_pred CCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCC-----CCCCCCCCCcceeEeccccccchhhhhccc-ccC
Q 042439 560 CAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPS-----LEEDGLPTNLHSLWIAGNMEIWKSTIEWGR-GFH 633 (766)
Q Consensus 560 ~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~-----~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~-~~~ 633 (766)
+++|++|++++|.+.+..|..++.+++|++|++++|..... ....+.+++|++|++++|. ++..+..+. .+.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG--METPTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC--CCCHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC--CCchHHHHHHHHh
Confidence 77888888888887666667778888888888888864321 1122466788888888852 222122111 146
Q ss_pred CCCCCcEEEEeccCCCCccC-CCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCC
Q 042439 634 RFSSLRQLRISGCDDDMVSF-PPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPE 712 (766)
Q Consensus 634 ~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 712 (766)
.+++|++|++++|. +..+ |+.+.. ...+++|++|++++ +.++.+|..+. ++|++|++++| .++.+|.
T Consensus 222 ~l~~L~~L~Ls~N~--l~~~~p~~~~~------~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~ 289 (310)
T 4glp_A 222 AGVQPHSLDLSHNS--LRATVNPSAPR------CMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQ 289 (310)
T ss_dssp HTCCCSSEECTTSC--CCCCCCSCCSS------CCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCCC
T ss_pred cCCCCCEEECCCCC--CCccchhhHHh------ccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCch
Confidence 78899999999873 4443 554421 11247999999988 58888887554 89999999985 5677766
Q ss_pred CCcccccceeeecCChh
Q 042439 713 KGLPSSLLQLYIGGCPL 729 (766)
Q Consensus 713 ~~~~~~L~~L~i~~~~~ 729 (766)
...+++|++|++++|+.
T Consensus 290 ~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TTSCCCCSCEECSSTTT
T ss_pred hhhCCCccEEECcCCCC
Confidence 55578999999999863
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=7.7e-16 Score=156.11 Aligned_cols=197 Identities=15% Similarity=0.108 Sum_probs=139.2
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEe
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRI 568 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 568 (766)
+++++++++++... .+|..+ .++++.|++++|...+..+..+..+++|++|++++|. +..++.. ..+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEEC
T ss_pred CCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEEC
Confidence 67888888876644 455444 3688999999987555556778889999999999884 4555553 67788999999
Q ss_pred ccCcCccccCccCCCCCCCCeeEecCCCCCCCCCC-CCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccC
Q 042439 569 HGCERLEALPKGLHNLTSLQELTIGRGVELPSLEE-DGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCD 647 (766)
Q Consensus 569 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~ 647 (766)
++|.+. .+|..+..+++|++|++++|......+. ...+++|++|++++|. +.... +..+..+++|+.|++++|
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~--l~~~~--~~~~~~l~~L~~L~L~~N- 158 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE--LKTLP--PGLLTPTPKLEKLSLANN- 158 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC--CCCCC--TTTTTTCTTCCEEECTTS-
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC--CCccC--hhhcccccCCCEEECCCC-
Confidence 998754 6777788888999999988854433322 4567788888888852 22111 122567788888888876
Q ss_pred CCCccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcC
Q 042439 648 DDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPK 706 (766)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 706 (766)
.+..+|... +..+++|+.|++++ +.++.+|..+..+++|+.+++++|+.
T Consensus 159 -~l~~l~~~~--------~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 159 -NLTELPAGL--------LNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp -CCSCCCTTT--------TTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred -cCCccCHHH--------hcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCCc
Confidence 455666543 23567788888877 57777777777777788888887654
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=6.7e-16 Score=156.01 Aligned_cols=202 Identities=18% Similarity=0.108 Sum_probs=123.6
Q ss_pred CcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccC--CCCCCCCcceEEEccCCCCCccccccccCcchhHHH
Q 042439 358 CRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFP--EVALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEI 435 (766)
Q Consensus 358 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 435 (766)
++|++|++++|.+.+..+..+..+++|++|++++|... .++ ....+++|++|++++|......+.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------ 94 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALG------------ 94 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTT------------
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChh------------
Confidence 46777777777655444446667777777777777433 333 244467777777776653222211
Q ss_pred HHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchh-hhHhhcCCCCC
Q 042439 436 LMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLE-SIAERLDNNTS 514 (766)
Q Consensus 436 l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~ 514 (766)
.+..+++|++|+++++. +..+ +...+.. .++|++|++++|.... .+|..++.+++
T Consensus 95 ------------~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~----------l~~L~~L~l~~n~l~~~~l~~~~~~l~~ 150 (276)
T 2z62_A 95 ------------AFSGLSSLQKLVAVETN-LASL-ENFPIGH----------LKTLKELNVAHNLIQSFKLPEYFSNLTN 150 (276)
T ss_dssp ------------TTTTCTTCCEEECTTSC-CCCS-TTCCCTT----------CTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred ------------hhcCCccccEEECCCCC-cccc-Cchhccc----------CCCCCEEECcCCccceecCchhhccCCC
Confidence 12345667777776652 2222 1111111 1667777777776655 35677777888
Q ss_pred CCEEEeeeCCCCCcccccccCCCCCC----EEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCee
Q 042439 515 LETIDICYCGNLKNLPSGLHNLHQLQ----EISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQEL 590 (766)
Q Consensus 515 L~~L~l~~~~~l~~lp~~l~~l~~L~----~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 590 (766)
|++|++++|...+..+..+..+++|+ +|++++| .+..++.......+|+.|++++|.+.+..+..+..+++|++|
T Consensus 151 L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEE
T ss_pred CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEE
Confidence 88888888765444445555555555 7888887 445555555555678888888887654444456778888888
Q ss_pred EecCCCC
Q 042439 591 TIGRGVE 597 (766)
Q Consensus 591 ~l~~~~~ 597 (766)
++++|+.
T Consensus 230 ~l~~N~~ 236 (276)
T 2z62_A 230 WLHTNPW 236 (276)
T ss_dssp ECCSSCB
T ss_pred EccCCcc
Confidence 8887753
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=1.8e-16 Score=159.66 Aligned_cols=139 Identities=14% Similarity=-0.036 Sum_probs=92.3
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEe
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRI 568 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 568 (766)
++|++|++++|......+..+..+++|++|++++|...+..+..+..+++|++|++++|......+..+..+++|+.|++
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 55666666666655555556777888888888888644443444677888888888888544333334566788888888
Q ss_pred ccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCC
Q 042439 569 HGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSS 637 (766)
Q Consensus 569 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~ 637 (766)
++|.+.+..+..+..+++|++|++++|+.. +.+++|+.++++.| ...+.+|..++.++.
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n----~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWIN----KHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHH----HTGGGBBCTTSCBCG
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHH----hCCCcccCcccccCC
Confidence 888877666666788888888888888533 33456777777765 233444444444443
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=2.2e-15 Score=151.42 Aligned_cols=177 Identities=21% Similarity=0.259 Sum_probs=97.2
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccc-cccCCCCCCEEEecCCCCccccCC-CCCCCCCcceE
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPS-GLHNLHQLQEISIGRCGNLESFPE-GGLPCAKLSKL 566 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L 566 (766)
+++++|++++|......+..|..+++|++|++++|.. ..+|. .+..+++|++|++++|.. ..+|. .+..+++|++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEE
Confidence 4567777776665544445566666777777766643 33333 335566677777666633 33333 34456666666
Q ss_pred EeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEecc
Q 042439 567 RIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGC 646 (766)
Q Consensus 567 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~ 646 (766)
++++|.+.+..+..+..+++|++|++++|... .++. ..+..+++|++|++++|
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~--------------------------~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPK--------------------------GVFDKLTSLKELRLYNN 167 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT--------------------------TTTTTCTTCCEEECCSS
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCH--------------------------hHccCCcccceeEecCC
Confidence 66666655544455566666666666665322 2211 11445555555555554
Q ss_pred CCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCc
Q 042439 647 DDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCP 705 (766)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~ 705 (766)
.+..++... +..+++|+.|++++ +.++.++. .+..+++|+.|++++|+
T Consensus 168 --~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 168 --QLKRVPEGA--------FDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp --CCSCCCTTT--------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --cCcEeChhH--------hccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence 333343321 12345566666665 35555554 35566677777777655
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=6.9e-16 Score=161.51 Aligned_cols=223 Identities=20% Similarity=0.176 Sum_probs=160.8
Q ss_pred CCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccc-cccCCCCCCEEEecCCCCccccC-CCCCCCCCcce
Q 042439 488 PPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPS-GLHNLHQLQEISIGRCGNLESFP-EGGLPCAKLSK 565 (766)
Q Consensus 488 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~ 565 (766)
|+++++|++++|......+..|.++++|++|++++|...+.+|. .+.++++++++...++..+..++ ..+..+++|+.
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 46788888888876554445688899999999999877776654 46778887765554434556554 45667889999
Q ss_pred EEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCC---CCCCCcceeEeccccccchhhhhcccccCCCCCCcEEE
Q 042439 566 LRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEED---GLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLR 642 (766)
Q Consensus 566 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~ 642 (766)
|++++|.+....+..+....++..|++.++..+..++.. +....++.|++++|. ...++......++|++++
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-----i~~i~~~~f~~~~L~~l~ 183 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-----IQEIHNSAFNGTQLDELN 183 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-----CCEECTTSSTTEEEEEEE
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-----ccCCChhhccccchhHHh
Confidence 999998866555555666777888888887777666543 234568888888862 223343455667888888
Q ss_pred EeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCCCCccccccee
Q 042439 643 ISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPEKGLPSSLLQL 722 (766)
Q Consensus 643 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 722 (766)
++++ ..+..+|+.. +..+++|+.|++++ ++++.+|. ..+.+|++|.+.+|+.++.+|....+++|+.+
T Consensus 184 l~~~-n~l~~i~~~~--------f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l 251 (350)
T 4ay9_X 184 LSDN-NNLEELPNDV--------FHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEA 251 (350)
T ss_dssp CTTC-TTCCCCCTTT--------TTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEE
T ss_pred hccC-CcccCCCHHH--------hccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcChhhC
Confidence 8863 3677787654 35678899999998 58888885 34678888888888888888876567888888
Q ss_pred eecCC
Q 042439 723 YIGGC 727 (766)
Q Consensus 723 ~i~~~ 727 (766)
++.++
T Consensus 252 ~l~~~ 256 (350)
T 4ay9_X 252 SLTYP 256 (350)
T ss_dssp ECSCH
T ss_pred cCCCC
Confidence 88653
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=2.9e-15 Score=150.62 Aligned_cols=196 Identities=20% Similarity=0.252 Sum_probs=120.8
Q ss_pred CcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCC-CCCCCCcceEEe
Q 042439 490 SLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEG-GLPCAKLSKLRI 568 (766)
Q Consensus 490 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l 568 (766)
+.+.++++++... .+|..+ .++++.|++++|......+..+..+++|++|++++|. +..++.. +..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEEC
Confidence 3555665554433 234322 2455666666654332223345555666666665553 3334332 234555555555
Q ss_pred ccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCC
Q 042439 569 HGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDD 648 (766)
Q Consensus 569 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 648 (766)
++|.+.+..+..+..+++|++|++++|.... + .+..+..+++|++|++++|
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~--------------------------~~~~~~~l~~L~~L~Ls~n-- 143 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKS-L--------------------------PPRVFDSLTKLTYLSLGYN-- 143 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-C--------------------------CTTTTTTCTTCCEEECCSS--
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCe-e--------------------------CHHHhCcCcCCCEEECCCC--
Confidence 5555443333344455555555555542111 1 1122678899999999987
Q ss_pred CCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcCcccCCCCCc--ccccceeeec
Q 042439 649 DMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPKLKYFPEKGL--PSSLLQLYIG 725 (766)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~ 725 (766)
.+..+|... +..+++|++|++++ +.++.++. .+..+++|++|++++| .++.++...+ +++|+.|+++
T Consensus 144 ~l~~~~~~~--------~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 144 ELQSLPKGV--------FDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp CCCCCCTTT--------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCccCHhH--------ccCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEec
Confidence 466666543 34678999999999 58888887 5788999999999996 6788887433 7899999999
Q ss_pred CCh
Q 042439 726 GCP 728 (766)
Q Consensus 726 ~~~ 728 (766)
+||
T Consensus 214 ~N~ 216 (270)
T 2o6q_A 214 ENP 216 (270)
T ss_dssp SSC
T ss_pred CCC
Confidence 987
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=162.90 Aligned_cols=55 Identities=29% Similarity=0.372 Sum_probs=42.9
Q ss_pred CCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCc
Q 042439 636 SSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCP 705 (766)
Q Consensus 636 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 705 (766)
++|++|++++| .+..+|..+ +++|++|++++ +.++.+|. +..+++|++|++++|+
T Consensus 251 ~~L~~L~Ls~N--~l~~lp~~~-----------~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 251 SALNSLNLSFA--GLEQVPKGL-----------PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp TTCCCEECCSS--CCCSCCSCC-----------CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred CcCCEEECCCC--CCCchhhhh-----------cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCCC
Confidence 68888888886 455777644 37889999988 58888774 6788999999999975
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=6.7e-15 Score=153.99 Aligned_cols=223 Identities=17% Similarity=0.093 Sum_probs=153.5
Q ss_pred cCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCCC--CCCCCcceEEEccCCCCCccccccccCcchhHH
Q 042439 357 SCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPEV--ALPSKLRKIEICSCDALKSLPEAWMCDTNSSLE 434 (766)
Q Consensus 357 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~--~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 434 (766)
++++++|+|++|.+....+..|.++++|++|+|++|...+.++.. ..++++.++.+.+++.+..+++.
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~---------- 98 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE---------- 98 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT----------
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch----------
Confidence 367888888888854333346788888888888888777766643 34677776665555555555432
Q ss_pred HHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhH-hhcCCCC
Q 042439 435 ILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIA-ERLDNNT 513 (766)
Q Consensus 435 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~ 513 (766)
.+..+++|++|+++++ .++.+ +...+... .++..+++.++.....++ ..|..+.
T Consensus 99 -------------~f~~l~~L~~L~l~~n-~l~~~-~~~~~~~~----------~~l~~l~l~~~~~i~~l~~~~f~~~~ 153 (350)
T 4ay9_X 99 -------------AFQNLPNLQYLLISNT-GIKHL-PDVHKIHS----------LQKVLLDIQDNINIHTIERNSFVGLS 153 (350)
T ss_dssp -------------SBCCCTTCCEEEEEEE-CCSSC-CCCTTCCB----------SSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred -------------hhhhcccccccccccc-ccccC-Cchhhccc----------chhhhhhhccccccccccccchhhcc
Confidence 2345778888888875 34443 32222221 456677777666555554 3444443
Q ss_pred -CCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCC-CCCCCCcceEEeccCcCccccCccCCCCCCCCeeE
Q 042439 514 -SLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEG-GLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELT 591 (766)
Q Consensus 514 -~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 591 (766)
.++.|++++|. +..+|......++|++|++.++..++.+|.. +..+++|++|++++|.+ ..+|. ..+.+|+.|.
T Consensus 154 ~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l-~~lp~--~~~~~L~~L~ 229 (350)
T 4ay9_X 154 FESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPS--YGLENLKKLR 229 (350)
T ss_dssp SSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC-CCCCS--SSCTTCCEEE
T ss_pred hhhhhhcccccc-ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc-CccCh--hhhccchHhh
Confidence 57888998875 5667776667788999999887788888864 56788999999999874 45554 2356777777
Q ss_pred ecCCCCCCCCCCCCCCCCcceeEeccc
Q 042439 592 IGRGVELPSLEEDGLPTNLHSLWIAGN 618 (766)
Q Consensus 592 l~~~~~l~~~~~~~~~~~L~~L~l~~N 618 (766)
+.++..++.+|....+++|+.+++.++
T Consensus 230 ~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 230 ARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred hccCCCcCcCCCchhCcChhhCcCCCC
Confidence 778888888888888889999998874
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=7.1e-17 Score=168.54 Aligned_cols=107 Identities=17% Similarity=0.335 Sum_probs=45.6
Q ss_pred CCcceeeecCCC-chh-hhHhhcCCCCCCCEEEeeeCCCCCc--ccccccCCC-CCCEEEecCCC-Cc--cccCCCCCCC
Q 042439 489 PSLKSLHVLSCS-KLE-SIAERLDNNTSLETIDICYCGNLKN--LPSGLHNLH-QLQEISIGRCG-NL--ESFPEGGLPC 560 (766)
Q Consensus 489 ~~L~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~~l~~--lp~~l~~l~-~L~~L~l~~~~-~l--~~l~~~~~~~ 560 (766)
++|++|++++|. ... .++..+..+++|++|++++|..++. ++..+..++ +|++|++++|. .+ ..++..+..+
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~ 221 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 221 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC
Confidence 445555555442 222 2444444455555555555522221 233344455 55555555542 11 2222223334
Q ss_pred CCcceEEeccCc-CccccCccCCCCCCCCeeEecCC
Q 042439 561 AKLSKLRIHGCE-RLEALPKGLHNLTSLQELTIGRG 595 (766)
Q Consensus 561 ~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~~ 595 (766)
++|+.|++++|. .....+..+..+++|++|++++|
T Consensus 222 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 445555555544 22233334444444444444444
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=3.3e-15 Score=153.12 Aligned_cols=194 Identities=15% Similarity=0.209 Sum_probs=151.8
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEe
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRI 568 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 568 (766)
++|++|++++|.... ++ .+..+++|+.|++++|. +..++. +..+++|++|++++|. +..++ .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 679999999987554 44 57889999999999985 555555 8899999999999995 55565 4777899999999
Q ss_pred ccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCC
Q 042439 569 HGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDD 648 (766)
Q Consensus 569 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 648 (766)
++|.+.+ ++. +..+++|++|++++|. +..++....+++|++|++++|. +.. .+. +..+++|+.|++++|
T Consensus 115 ~~n~l~~-~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~--l~~---~~~-l~~l~~L~~L~l~~n-- 183 (308)
T 1h6u_A 115 TSTQITD-VTP-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQ--VSD---LTP-LANLSKLTTLKADDN-- 183 (308)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSC--CCC---CGG-GTTCTTCCEEECCSS--
T ss_pred CCCCCCC-chh-hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCc--CCC---Chh-hcCCCCCCEEECCCC--
Confidence 9998655 443 8899999999999984 4445557778999999999952 221 222 788999999999997
Q ss_pred CCccCCCCcccccccCCCCCccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCC
Q 042439 649 DMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPE 712 (766)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 712 (766)
.+..++. + ..+++|++|++++ +.+..++ .+..+++|++|++++|+ ++..|.
T Consensus 184 ~l~~~~~-l---------~~l~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 184 KISDISP-L---------ASLPNLIEVHLKN-NQISDVS-PLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp CCCCCGG-G---------GGCTTCCEEECTT-SCCCBCG-GGTTCTTCCEEEEEEEE-EECCCE
T ss_pred ccCcChh-h---------cCCCCCCEEEccC-CccCccc-cccCCCCCCEEEccCCe-eecCCe
Confidence 4555554 2 3678999999999 5888887 48889999999999965 555554
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=2.3e-15 Score=151.42 Aligned_cols=209 Identities=14% Similarity=0.117 Sum_probs=121.7
Q ss_pred ccCCCCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCCcccCC
Q 042439 321 LQDSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSLVSFPE 400 (766)
Q Consensus 321 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~ 400 (766)
...+++|++|+++++. ++.++. + ..+++|++|++++|.+.+ ++ .+..+++|++|++++|... .++.
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~~~~------l----~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~-~~~~ 102 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD-IKSVQG------I----QYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQ-SLPN 102 (272)
T ss_dssp HHHHTTCCEEECTTSC-CCCCTT------G----GGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCC-CCCT
T ss_pred cccccceeeeeeCCCC-cccccc------c----ccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccC-ccCh
Confidence 4567778888887753 444322 1 123778888888887543 33 5677788888888887443 3443
Q ss_pred --CCCCCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCCCccc
Q 042439 401 --VALPSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNELPAT 478 (766)
Q Consensus 401 --~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 478 (766)
...+++|++|++++|... .++.. .+..+++|++|++++| .++.+ +...+..
T Consensus 103 ~~~~~l~~L~~L~L~~n~l~-~~~~~-----------------------~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~- 155 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVENQLQ-SLPDG-----------------------VFDKLTNLTYLNLAHN-QLQSL-PKGVFDK- 155 (272)
T ss_dssp TTTTTCTTCCEEECTTSCCC-CCCTT-----------------------TTTTCTTCCEEECCSS-CCCCC-CTTTTTT-
T ss_pred hHhcCCcCCCEEECCCCcCC-ccCHH-----------------------HhccCCCCCEEECCCC-ccCcc-CHHHhcc-
Confidence 345777888888777633 22221 1234566777777765 33333 2221211
Q ss_pred cccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCC
Q 042439 479 LESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGL 558 (766)
Q Consensus 479 l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 558 (766)
.++|++|++++|......+..++.+++|+.|++++|...+..+..+..+++|++|++++|+.. .
T Consensus 156 ---------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~ 219 (272)
T 3rfs_A 156 ---------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------C 219 (272)
T ss_dssp ---------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------C
T ss_pred ---------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------c
Confidence 156666666666655544455566666666666666544443444566666666666666432 2
Q ss_pred CCCCcceEEeccCcCccccCccCCCCCC
Q 042439 559 PCAKLSKLRIHGCERLEALPKGLHNLTS 586 (766)
Q Consensus 559 ~~~~L~~L~l~~~~~~~~~p~~~~~l~~ 586 (766)
.+++|+.++++.|.+.+.+|..++.++.
T Consensus 220 ~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 220 TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 2445666666666666666665555443
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=5.4e-15 Score=151.49 Aligned_cols=199 Identities=15% Similarity=0.166 Sum_probs=150.1
Q ss_pred ccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCC
Q 042439 448 RRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLK 527 (766)
Q Consensus 448 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 527 (766)
....+++|++|++++| .++.+ + . +.. .++|++|++++|......+ +..+++|++|++++|. +.
T Consensus 36 ~~~~l~~L~~L~l~~~-~i~~l-~--~----~~~------l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~-l~ 98 (308)
T 1h6u_A 36 TQADLDGITTLSAFGT-GVTTI-E--G----VQY------LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LK 98 (308)
T ss_dssp CHHHHHTCCEEECTTS-CCCCC-T--T----GGG------CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CS
T ss_pred cHHHcCCcCEEEeeCC-CccCc-h--h----hhc------cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-CC
Confidence 3455889999999987 34433 1 1 222 2789999999987655443 8899999999999986 55
Q ss_pred cccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCC
Q 042439 528 NLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLP 607 (766)
Q Consensus 528 ~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 607 (766)
.++ .+..+++|++|++++|. +..++. +..+++|+.|++++|.+.+. +. +..+++|++|++++|. +..++....+
T Consensus 99 ~~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l 172 (308)
T 1h6u_A 99 NVS-AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQ-VSDLTPLANL 172 (308)
T ss_dssp CCG-GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSC-CCCCGGGTTC
T ss_pred Cch-hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCc-CCCChhhcCC
Confidence 554 68889999999999995 455654 77889999999999986554 33 8889999999999984 4445557788
Q ss_pred CCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccch
Q 042439 608 TNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLS 687 (766)
Q Consensus 608 ~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 687 (766)
++|+.|++++|. +.. ++. +..+++|++|++++| .+..+++ + ..+++|+.|++++ +.++..|
T Consensus 173 ~~L~~L~l~~n~--l~~---~~~-l~~l~~L~~L~L~~N--~l~~~~~-l---------~~l~~L~~L~l~~-N~i~~~~ 233 (308)
T 1h6u_A 173 SKLTTLKADDNK--ISD---ISP-LASLPNLIEVHLKNN--QISDVSP-L---------ANTSNLFIVTLTN-QTITNQP 233 (308)
T ss_dssp TTCCEEECCSSC--CCC---CGG-GGGCTTCCEEECTTS--CCCBCGG-G---------TTCTTCCEEEEEE-EEEECCC
T ss_pred CCCCEEECCCCc--cCc---Chh-hcCCCCCCEEEccCC--ccCcccc-c---------cCCCCCCEEEccC-CeeecCC
Confidence 999999999962 221 111 788999999999997 4555543 2 4688999999999 4677766
Q ss_pred h
Q 042439 688 S 688 (766)
Q Consensus 688 ~ 688 (766)
.
T Consensus 234 ~ 234 (308)
T 1h6u_A 234 V 234 (308)
T ss_dssp E
T ss_pred e
Confidence 4
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=1.3e-16 Score=166.41 Aligned_cols=131 Identities=11% Similarity=0.154 Sum_probs=88.7
Q ss_pred CceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhh-hHhhcCCCCCCCEEEeeeCCCCCcccc
Q 042439 453 SLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLES-IAERLDNNTSLETIDICYCGNLKNLPS 531 (766)
Q Consensus 453 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~lp~ 531 (766)
+.++.++++++. +... .+. +. ..++|++|++++|..... ++..+..+++|++|++++|...+..+.
T Consensus 70 ~~l~~L~l~~n~-l~~~-----~~~-~~------~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~ 136 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQP-----LAE-HF------SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN 136 (336)
T ss_dssp TTCSEEECTTCE-ECSC-----CCS-CC------CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHH
T ss_pred ccceEEEcCCcc-cccc-----chh-hc------cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHH
Confidence 788888888753 2222 111 11 127788888888876654 777788888888888888865556677
Q ss_pred cccCCCCCCEEEecCCCCcc--ccCCCCCCCCCcceEEeccC-cCccc-cCccCCCCC-CCCeeEecCCC
Q 042439 532 GLHNLHQLQEISIGRCGNLE--SFPEGGLPCAKLSKLRIHGC-ERLEA-LPKGLHNLT-SLQELTIGRGV 596 (766)
Q Consensus 532 ~l~~l~~L~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~-~~~~~-~p~~~~~l~-~L~~L~l~~~~ 596 (766)
.+..+++|++|++++|..+. .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++|.
T Consensus 137 ~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 77778888888888884444 24444556778888888887 44432 455566677 77777777763
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=4.8e-16 Score=165.37 Aligned_cols=262 Identities=12% Similarity=0.038 Sum_probs=168.1
Q ss_pred ccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCc---hhhhH-------hhcCCCCCCCEEE
Q 042439 450 YTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSK---LESIA-------ERLDNNTSLETID 519 (766)
Q Consensus 450 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~---~~~~~-------~~~~~l~~L~~L~ 519 (766)
..+++|++|++++|. +... ....++..+.. .++|++|++++|.. ...+| ..+..+++|++|+
T Consensus 29 ~~~~~L~~L~L~~n~-i~~~-~~~~l~~~l~~------~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNT-IGTE-AARWLSENIAS------KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHCSCCCEEECTTSE-ECHH-HHHHHHHTTTT------CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred hcCCCccEEECCCCC-CCHH-HHHHHHHHHHh------CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 346789999999873 3322 11111111111 27899999998742 22333 3457899999999
Q ss_pred eeeCCCCC----cccccccCCCCCCEEEecCCCCccc----cCCCCCCC---------CCcceEEeccCcCc-cccC---
Q 042439 520 ICYCGNLK----NLPSGLHNLHQLQEISIGRCGNLES----FPEGGLPC---------AKLSKLRIHGCERL-EALP--- 578 (766)
Q Consensus 520 l~~~~~l~----~lp~~l~~l~~L~~L~l~~~~~l~~----l~~~~~~~---------~~L~~L~l~~~~~~-~~~p--- 578 (766)
+++|.... .+|..+..+++|++|++++|..... ++..+..+ ++|++|++++|.+. ..++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 99997665 3677888899999999999965322 22222223 79999999999876 3444
Q ss_pred ccCCCCCCCCeeEecCCCCCC-----CCC-CCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCc-
Q 042439 579 KGLHNLTSLQELTIGRGVELP-----SLE-EDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMV- 651 (766)
Q Consensus 579 ~~~~~l~~L~~L~l~~~~~l~-----~~~-~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~- 651 (766)
..+..+++|++|++++|.... ..+ ....+++|+.|++++|...-.....++..+..+++|++|++++|.....
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 356678899999999985331 222 4466789999999996321111233444578899999999999742110
Q ss_pred --cCCCCcccccccCCCCCccccceEEeccCCCCcc-----chhhh-ccCCCcceeecccCcCcccCCC-----CCcccc
Q 042439 652 --SFPPKADDIRLGTALPLPASLTSLLIFSFPNLER-----LSSSI-VDLQNLTELYLEDCPKLKYFPE-----KGLPSS 718 (766)
Q Consensus 652 --~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~-~~l~~L~~L~l~~c~~l~~l~~-----~~~~~~ 718 (766)
.++..+. ....++|++|++++| .++. +|..+ .++++|++|++++|+. +.... ...++.
T Consensus 261 ~~~l~~~l~-------~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l-~~~~~~~~~l~~~l~~ 331 (386)
T 2ca6_A 261 AAAVVDAFS-------KLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFST 331 (386)
T ss_dssp HHHHHHHHH-------TCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBS-CTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHh-------hccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcC-CcchhHHHHHHHHhhh
Confidence 1222210 012678999999995 6766 77766 6689999999999753 33331 112455
Q ss_pred cceeeecCCh
Q 042439 719 LLQLYIGGCP 728 (766)
Q Consensus 719 L~~L~i~~~~ 728 (766)
++.+++....
T Consensus 332 ~~~~~l~~~d 341 (386)
T 2ca6_A 332 RGRGELDELD 341 (386)
T ss_dssp HTCCEECCCC
T ss_pred cCcchhhhcc
Confidence 6556655543
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=1.2e-13 Score=136.97 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=81.3
Q ss_pred CCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCC-CCCCCCcceeEe
Q 042439 537 HQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEE-DGLPTNLHSLWI 615 (766)
Q Consensus 537 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l 615 (766)
++++.|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++++|......+. ...+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 3455555555433322223344445555555555544443344444555555555555432222111 133444444444
Q ss_pred ccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCC
Q 042439 616 AGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQ 694 (766)
Q Consensus 616 ~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~ 694 (766)
++|. +.... +..+..+++|++|++++| .+..+|... +..+++|++|++++ +.++.++. .+..++
T Consensus 115 ~~N~--l~~~~--~~~~~~l~~L~~L~Ls~N--~l~~~~~~~--------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 115 GGNQ--LKSLP--SGVFDRLTKLKELRLNTN--QLQSIPAGA--------FDKLTNLQTLSLST-NQLQSVPHGAFDRLG 179 (251)
T ss_dssp CSSC--CCCCC--TTTTTTCTTCCEEECCSS--CCCCCCTTT--------TTTCTTCCEEECCS-SCCSCCCTTTTTTCT
T ss_pred CCCc--CCCcC--hhHhccCCcccEEECcCC--cCCccCHHH--------cCcCcCCCEEECCC-CcCCccCHHHHhCCC
Confidence 4431 11111 111567788888888876 455565532 23567788888887 57777665 567778
Q ss_pred CcceeecccCcC
Q 042439 695 NLTELYLEDCPK 706 (766)
Q Consensus 695 ~L~~L~l~~c~~ 706 (766)
+|++|++++|+.
T Consensus 180 ~L~~L~l~~N~~ 191 (251)
T 3m19_A 180 KLQTITLFGNQF 191 (251)
T ss_dssp TCCEEECCSCCB
T ss_pred CCCEEEeeCCce
Confidence 888888888653
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=1e-13 Score=137.61 Aligned_cols=155 Identities=17% Similarity=0.114 Sum_probs=103.1
Q ss_pred CCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEE
Q 042439 488 PPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLR 567 (766)
Q Consensus 488 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 567 (766)
++++++|++++|......+..+..+++|++|++++|...+..+..+..+++|++|++++|......+..+..+++|++|+
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 45688888888887777777788888888888888876555566677888888888888854433334556778888888
Q ss_pred eccCcCccccCccCCCCCCCCeeEecCCCCCCCCC-CCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEecc
Q 042439 568 IHGCERLEALPKGLHNLTSLQELTIGRGVELPSLE-EDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGC 646 (766)
Q Consensus 568 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~ 646 (766)
+++|.+.+..+..+..+++|++|++++|......+ ..+.+++|++|++++|. +.. ..+..+..+++|+.|++++|
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~--~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ--LQS--VPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSC--CCTTTTTTCTTCCEEECCSC
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc--CCc--cCHHHHhCCCCCCEEEeeCC
Confidence 88887665545556778888888888874333222 13455666666666641 111 11122555666666666664
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=8.7e-16 Score=163.41 Aligned_cols=230 Identities=14% Similarity=0.091 Sum_probs=164.3
Q ss_pred CCcceeeecCCCchhh----hHhhcCCCCCCCEEEeeeCCC---CCcccccc-------cCCCCCCEEEecCCCCcc---
Q 042439 489 PSLKSLHVLSCSKLES----IAERLDNNTSLETIDICYCGN---LKNLPSGL-------HNLHQLQEISIGRCGNLE--- 551 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~---l~~lp~~l-------~~l~~L~~L~l~~~~~l~--- 551 (766)
++|++|++++|..... ++..+..+++|++|++++|.. .+.+|.++ ..+++|++|++++|....
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 7899999999987765 445578899999999999742 22445544 679999999999996554
Q ss_pred -ccCCCCCCCCCcceEEeccCcCccccC----ccCCCC---------CCCCeeEecCCCCC-CCCC----CCCCCCCcce
Q 042439 552 -SFPEGGLPCAKLSKLRIHGCERLEALP----KGLHNL---------TSLQELTIGRGVEL-PSLE----EDGLPTNLHS 612 (766)
Q Consensus 552 -~l~~~~~~~~~L~~L~l~~~~~~~~~p----~~~~~l---------~~L~~L~l~~~~~l-~~~~----~~~~~~~L~~ 612 (766)
.+|..+..+++|++|++++|.+....+ ..+..+ ++|++|++++|... ..++ ....+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 356566778999999999998754333 233344 89999999999643 2233 2235679999
Q ss_pred eEeccccccchhhh-hcccccCCCCCCcEEEEeccCCC---CccCCCCcccccccCCCCCccccceEEeccCCCCcc---
Q 042439 613 LWIAGNMEIWKSTI-EWGRGFHRFSSLRQLRISGCDDD---MVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLER--- 685 (766)
Q Consensus 613 L~l~~N~~~l~~~~-~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--- 685 (766)
|++++|...-.... ..+..+..+++|+.|++++|... ...+|..+ ...++|++|++++| .++.
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l---------~~~~~L~~L~L~~n-~i~~~~~ 261 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL---------KSWPNLRELGLNDC-LLSARGA 261 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG---------GGCTTCCEEECTTC-CCCHHHH
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH---------ccCCCcCEEECCCC-CCchhhH
Confidence 99999522211111 12224889999999999997421 13444433 46789999999995 5664
Q ss_pred --chhhh--ccCCCcceeecccCcCccc-----CCCC--CcccccceeeecCChh
Q 042439 686 --LSSSI--VDLQNLTELYLEDCPKLKY-----FPEK--GLPSSLLQLYIGGCPL 729 (766)
Q Consensus 686 --l~~~~--~~l~~L~~L~l~~c~~l~~-----l~~~--~~~~~L~~L~i~~~~~ 729 (766)
++..+ ..+++|++|++++|. ++. +|.. ..+++|++|++++|+.
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 35555 348999999999975 454 6552 2268999999999964
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=1.1e-13 Score=131.79 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=101.6
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEe
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRI 568 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 568 (766)
++|++|++++|... .+| .+..+++|++|++++| .+..+ ..+..+++|++|++++|......+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 44566666555443 333 4666778888888887 34444 36777888888888888665556667777888888888
Q ss_pred ccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEecc
Q 042439 569 HGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGC 646 (766)
Q Consensus 569 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~ 646 (766)
++|.+.+..|..+..+++|++|++++|..++.++....+++|++|++++|. +.. ++ .+..+++|+.|++++|
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~--i~~---~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG--VHD---YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC--CCC---CT-TGGGCSSCCEEEECBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC--CcC---hH-HhccCCCCCEEEeeCc
Confidence 888877766777788888888888888656666656666777777777741 111 11 2667777777777775
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=7.4e-16 Score=162.15 Aligned_cols=107 Identities=8% Similarity=-0.050 Sum_probs=47.8
Q ss_pred CCcceeeecCCCchhhhH----hhcCC-CCCCCEEEeeeCCCCC----cccccccCCC-CCCEEEecCCCCccccCC---
Q 042439 489 PSLKSLHVLSCSKLESIA----ERLDN-NTSLETIDICYCGNLK----NLPSGLHNLH-QLQEISIGRCGNLESFPE--- 555 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~----~~~~~-l~~L~~L~l~~~~~l~----~lp~~l~~l~-~L~~L~l~~~~~l~~l~~--- 555 (766)
++|++|++++|......+ ..+.. .++|++|++++|.... .++..+..++ +|++|++++|......+.
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 188 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence 456666666665544222 22333 2466666666654332 1223333343 666666666533222111
Q ss_pred -CCCCC-CCcceEEeccCcCccc----cCccCCC-CCCCCeeEecCC
Q 042439 556 -GGLPC-AKLSKLRIHGCERLEA----LPKGLHN-LTSLQELTIGRG 595 (766)
Q Consensus 556 -~~~~~-~~L~~L~l~~~~~~~~----~p~~~~~-l~~L~~L~l~~~ 595 (766)
.+..+ ++|++|++++|.+... ++..+.. .++|++|++++|
T Consensus 189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 11122 3555566655553331 2223332 235555555555
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=4.1e-15 Score=156.42 Aligned_cols=231 Identities=14% Similarity=0.079 Sum_probs=151.5
Q ss_pred CCCCcceeeecCCCchhhhH----hhcCCCC-CCCEEEeeeCCCCCcccccccCC-----CCCCEEEecCCCCccccCCC
Q 042439 487 LPPSLKSLHVLSCSKLESIA----ERLDNNT-SLETIDICYCGNLKNLPSGLHNL-----HQLQEISIGRCGNLESFPEG 556 (766)
Q Consensus 487 ~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~l~~lp~~l~~l-----~~L~~L~l~~~~~l~~l~~~ 556 (766)
.+++|++|++++|......+ ..+..++ +|++|++++|......+..+..+ ++|++|++++|......+..
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 45679999999998766444 6778888 89999999997555545555554 89999999999644333221
Q ss_pred ----CCCC-CCcceEEeccCcCccccCcc----CCC-CCCCCeeEecCCCCCCCC----CC-C-CCCCCcceeEeccccc
Q 042439 557 ----GLPC-AKLSKLRIHGCERLEALPKG----LHN-LTSLQELTIGRGVELPSL----EE-D-GLPTNLHSLWIAGNME 620 (766)
Q Consensus 557 ----~~~~-~~L~~L~l~~~~~~~~~p~~----~~~-l~~L~~L~l~~~~~l~~~----~~-~-~~~~~L~~L~l~~N~~ 620 (766)
+..+ ++|++|++++|.+....+.. +.. .++|++|++++|.....- +. . ...++|++|++++|..
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 2233 79999999999875544333 334 369999999998533211 11 1 2234899999999632
Q ss_pred cchhhhhcccccCCC-CCCcEEEEeccCCCCcc-----CCCCcccccccCCCCCccccceEEeccCCCCccchh-----h
Q 042439 621 IWKSTIEWGRGFHRF-SSLRQLRISGCDDDMVS-----FPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-----S 689 (766)
Q Consensus 621 ~l~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-----~ 689 (766)
.-.....+...+..+ ++|++|++++|. +.. ++..+. ...++|++|++++ +.++..+. .
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--i~~~~~~~l~~~l~--------~~~~~L~~L~Ls~-N~l~~~~~~~l~~~ 248 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANL--LGLKSYAELAYIFS--------SIPNHVVSLNLCL-NCLHGPSLENLKLL 248 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSC--GGGSCHHHHHHHHH--------HSCTTCCEEECCS-SCCCCCCHHHHHHT
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCC--CChhHHHHHHHHHh--------cCCCCceEEECcC-CCCCcHHHHHHHHH
Confidence 211222222235556 499999999973 332 222221 1246899999999 47766442 4
Q ss_pred hccCCCcceeecccCcCcccCC--------C-CCcccccceeeecCChh
Q 042439 690 IVDLQNLTELYLEDCPKLKYFP--------E-KGLPSSLLQLYIGGCPL 729 (766)
Q Consensus 690 ~~~l~~L~~L~l~~c~~l~~l~--------~-~~~~~~L~~L~i~~~~~ 729 (766)
+..+++|++|++++|. +..+. . ...+++|++|++++|+.
T Consensus 249 ~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp TTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 4678899999999975 22222 1 12367899999999864
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=2.7e-13 Score=149.14 Aligned_cols=163 Identities=20% Similarity=0.222 Sum_probs=71.0
Q ss_pred CCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEe
Q 042439 513 TSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTI 592 (766)
Q Consensus 513 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 592 (766)
++|+.|++++|. ++.+| ..+++|++|++++| .+..+|. +.. +|+.|++++|.+.+ +|. .+++|++|++
T Consensus 80 ~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNA-LISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 344444444443 22333 22444555555544 2223444 222 45555555544333 333 3445555555
Q ss_pred cCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCcccc
Q 042439 593 GRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASL 672 (766)
Q Consensus 593 ~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 672 (766)
++|.. +.++. .+++|++|++++|. + ..+|. +. ++|+.|++++| .+..+|. +.. .-....+.|
T Consensus 148 s~N~l-~~lp~--~l~~L~~L~Ls~N~--L---~~lp~-l~--~~L~~L~Ls~N--~L~~lp~-~~~----~L~~~~~~L 209 (571)
T 3cvr_A 148 DNNQL-TMLPE--LPTSLEVLSVRNNQ--L---TFLPE-LP--ESLEALDVSTN--LLESLPA-VPV----RNHHSEETE 209 (571)
T ss_dssp CSSCC-SCCCC--CCTTCCEEECCSSC--C---SCCCC-CC--TTCCEEECCSS--CCSSCCC-CC------------CC
T ss_pred CCCcc-CcCCC--cCCCcCEEECCCCC--C---CCcch-hh--CCCCEEECcCC--CCCchhh-HHH----hhhcccccc
Confidence 54432 22332 34455555555531 1 11222 22 55555555554 3334444 210 000011222
Q ss_pred ceEEeccCCCCccchhhhccCCCcceeecccCcC
Q 042439 673 TSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPK 706 (766)
Q Consensus 673 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 706 (766)
+.|++++ |.++.+|..+..+++|+.|++++|+.
T Consensus 210 ~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 210 IFFRCRE-NRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred eEEecCC-CcceecCHHHhcCCCCCEEEeeCCcC
Confidence 6666666 46666666555566666666666543
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=1.9e-13 Score=129.96 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=123.7
Q ss_pred cccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCC
Q 042439 447 SRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNL 526 (766)
Q Consensus 447 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 526 (766)
.....+++|+.|+++++ .++.+ + .+..+ ++|++|++++|.. ..+ ..+..+++|++|++++|...
T Consensus 38 i~~~~l~~L~~L~l~~n-~i~~l------~-~l~~l------~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~ 101 (197)
T 4ezg_A 38 ITEAQMNSLTYITLANI-NVTDL------T-GIEYA------HNIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVT 101 (197)
T ss_dssp CBHHHHHTCCEEEEESS-CCSCC------T-TGGGC------TTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCB
T ss_pred CChhhcCCccEEeccCC-CccCh------H-HHhcC------CCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccC
Confidence 34466789999999986 34433 2 12222 7899999999943 333 36888999999999999876
Q ss_pred CcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCC
Q 042439 527 KNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGL 606 (766)
Q Consensus 527 ~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 606 (766)
+..+..+..+++|++|++++|......+..+..+++|++|++++|...+.+| .+..+++|++|++++|. +..++....
T Consensus 102 ~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~l~~ 179 (197)
T 4ezg_A 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRGIED 179 (197)
T ss_dssp GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTTGGG
T ss_pred cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHHhcc
Confidence 6678889999999999999997666566667789999999999998677776 68899999999999995 455666778
Q ss_pred CCCcceeEeccc
Q 042439 607 PTNLHSLWIAGN 618 (766)
Q Consensus 607 ~~~L~~L~l~~N 618 (766)
+++|+.|++++|
T Consensus 180 l~~L~~L~l~~N 191 (197)
T 4ezg_A 180 FPKLNQLYAFSQ 191 (197)
T ss_dssp CSSCCEEEECBC
T ss_pred CCCCCEEEeeCc
Confidence 899999999997
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=8.3e-13 Score=145.24 Aligned_cols=178 Identities=21% Similarity=0.218 Sum_probs=139.8
Q ss_pred CCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEe
Q 042439 513 TSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTI 592 (766)
Q Consensus 513 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 592 (766)
.+++.|++++|. ++.+|..+ +++|++|++++| .+..+| ..+++|+.|++++|.+.+ +|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSC-CSCCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCC-CCccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 389999999986 55588766 489999999999 456788 346899999999998766 777 655 9999999
Q ss_pred cCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCcccc
Q 042439 593 GRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASL 672 (766)
Q Consensus 593 ~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 672 (766)
++|.. +.++. .+++|+.|++++|. + ..+|. .+++|+.|++++| .+..+|. + . ++|
T Consensus 128 s~N~l-~~lp~--~l~~L~~L~Ls~N~--l---~~lp~---~l~~L~~L~Ls~N--~L~~lp~-l----------~-~~L 182 (571)
T 3cvr_A 128 DNNQL-TMLPE--LPALLEYINADNNQ--L---TMLPE---LPTSLEVLSVRNN--QLTFLPE-L----------P-ESL 182 (571)
T ss_dssp CSSCC-SCCCC--CCTTCCEEECCSSC--C---SCCCC---CCTTCCEEECCSS--CCSCCCC-C----------C-TTC
T ss_pred CCCcC-CCCCC--cCccccEEeCCCCc--c---CcCCC---cCCCcCEEECCCC--CCCCcch-h----------h-CCC
Confidence 99954 44665 78999999999972 2 22332 5789999999997 4666776 4 2 799
Q ss_pred ceEEeccCCCCccchhhhccCCCc-------ceeecccCcCcccCCC-CCcccccceeeecCChhHH
Q 042439 673 TSLLIFSFPNLERLSSSIVDLQNL-------TELYLEDCPKLKYFPE-KGLPSSLLQLYIGGCPLIA 731 (766)
Q Consensus 673 ~~L~l~~~~~l~~l~~~~~~l~~L-------~~L~l~~c~~l~~l~~-~~~~~~L~~L~i~~~~~l~ 731 (766)
+.|++++ +.++.+|. +.. +| ++|++++| .++.+|. ...+++|++|++++|+.-.
T Consensus 183 ~~L~Ls~-N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 183 EALDVST-NLLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CEEECCS-SCCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred CEEECcC-CCCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 9999999 58999997 543 77 99999995 6888987 3338999999999997633
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=2.7e-13 Score=137.45 Aligned_cols=175 Identities=17% Similarity=0.219 Sum_probs=138.0
Q ss_pred CCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCe
Q 042439 510 DNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQE 589 (766)
Q Consensus 510 ~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 589 (766)
..+++|+.|++++|. +..++ .+..+++|++|++++|. +..++. +..+++|+.|++++|.+.+ +| .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~-i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCC-cccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 347789999999985 55554 58889999999999994 455555 7789999999999998654 44 4899999999
Q ss_pred eEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCc
Q 042439 590 LTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLP 669 (766)
Q Consensus 590 L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (766)
|++++|. +..++....+++|+.|++++|. +... ..+..+++|+.|++++| .+..+++ + ..+
T Consensus 117 L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~--l~~~----~~l~~l~~L~~L~L~~N--~l~~~~~-l---------~~l 177 (291)
T 1h6t_A 117 LSLEHNG-ISDINGLVHLPQLESLYLGNNK--ITDI----TVLSRLTKLDTLSLEDN--QISDIVP-L---------AGL 177 (291)
T ss_dssp EECTTSC-CCCCGGGGGCTTCCEEECCSSC--CCCC----GGGGGCTTCSEEECCSS--CCCCCGG-G---------TTC
T ss_pred EECCCCc-CCCChhhcCCCCCCEEEccCCc--CCcc----hhhccCCCCCEEEccCC--ccccchh-h---------cCC
Confidence 9999994 5556667788999999999962 2211 23889999999999997 4555544 3 468
Q ss_pred cccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCC
Q 042439 670 ASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPE 712 (766)
Q Consensus 670 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 712 (766)
++|+.|++++ +.++.++ .+..+++|+.|++++|+ +...|.
T Consensus 178 ~~L~~L~L~~-N~i~~l~-~l~~l~~L~~L~l~~n~-i~~~~~ 217 (291)
T 1h6t_A 178 TKLQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQE-CLNKPI 217 (291)
T ss_dssp TTCCEEECCS-SCCCBCG-GGTTCTTCSEEEEEEEE-EECCCE
T ss_pred CccCEEECCC-CcCCCCh-hhccCCCCCEEECcCCc-ccCCcc
Confidence 8999999999 5888887 48889999999999964 444443
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=5.1e-13 Score=135.44 Aligned_cols=171 Identities=15% Similarity=0.138 Sum_probs=133.1
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEe
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRI 568 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 568 (766)
++|++|++++|..... + .+..+++|+.|++++|.. ..++. +..+++|++|++++|. +..++. +..+++|+.|++
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l-~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCcc-CCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEEC
Confidence 6799999999876443 3 377899999999999964 44554 8899999999999994 555654 778899999999
Q ss_pred ccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCC
Q 042439 569 HGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDD 648 (766)
Q Consensus 569 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 648 (766)
++|.+.+ + ..+..+++|++|++++|. +..++....+++|+.|++++|. +.. .+. +..+++|+.|++++|
T Consensus 120 ~~n~i~~-~-~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~--l~~---~~~-l~~l~~L~~L~L~~N-- 188 (291)
T 1h6t_A 120 EHNGISD-I-NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQ--ISD---IVP-LAGLTKLQNLYLSKN-- 188 (291)
T ss_dssp TTSCCCC-C-GGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC--CCC---CGG-GTTCTTCCEEECCSS--
T ss_pred CCCcCCC-C-hhhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCCc--ccc---chh-hcCCCccCEEECCCC--
Confidence 9998655 4 468889999999999984 4445667788999999999962 221 122 889999999999997
Q ss_pred CCccCCCCcccccccCCCCCccccceEEeccCCCCccch
Q 042439 649 DMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLS 687 (766)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 687 (766)
.+..++. + ..+++|+.|+++++ .+...|
T Consensus 189 ~i~~l~~-l---------~~l~~L~~L~l~~n-~i~~~~ 216 (291)
T 1h6t_A 189 HISDLRA-L---------AGLKNLDVLELFSQ-ECLNKP 216 (291)
T ss_dssp CCCBCGG-G---------TTCTTCSEEEEEEE-EEECCC
T ss_pred cCCCChh-h---------ccCCCCCEEECcCC-cccCCc
Confidence 4555543 2 46889999999994 666555
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.39 E-value=5.1e-12 Score=123.13 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=30.6
Q ss_pred cCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccC
Q 042439 632 FHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDC 704 (766)
Q Consensus 632 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c 704 (766)
+..+++|++|++++| .+..+|..+ ..+++|+.|++++ +.++.++. .+..+++|++|++++|
T Consensus 108 ~~~l~~L~~L~Ls~N--~l~~lp~~~---------~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 108 FDRLVHLKELFMCCN--KLTELPRGI---------ERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TTTCTTCCEEECCSS--CCCSCCTTG---------GGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred hCcchhhCeEeccCC--cccccCccc---------ccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 455666666666664 233444433 2344555555555 34444443 3444555555555554
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=5.2e-12 Score=121.28 Aligned_cols=156 Identities=15% Similarity=0.029 Sum_probs=91.9
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCC-CCCCCCCcceEE
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPE-GGLPCAKLSKLR 567 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 567 (766)
+++++|++++|......+..+..+++|++|++++|...+..+..+..+++|++|++++|.. ..++. .+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC-CccCHhHhcCccCCCEEE
Confidence 4566666666665544444566677777777777654333233456677777777777643 34443 345667777777
Q ss_pred eccCcCccccCccCCCCCCCCeeEecCCCCCCCCCC-CCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEecc
Q 042439 568 IHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEE-DGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGC 646 (766)
Q Consensus 568 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~ 646 (766)
+++|.+.+..+..+..+++|++|++++|......+. ...+++|++|++++|. ....+++|+.|+++.|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-----------~~~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-----------WDCTCPGIRYLSEWIN 175 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-----------BCCCTTTTHHHHHHHH
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-----------eecCCCCHHHHHHHHH
Confidence 777765544444566677777777777643332222 3456677777777751 0344566777777664
Q ss_pred CCCCccCCCCc
Q 042439 647 DDDMVSFPPKA 657 (766)
Q Consensus 647 ~~~~~~~~~~~ 657 (766)
. ....+|+.+
T Consensus 176 ~-~~g~ip~~~ 185 (208)
T 2o6s_A 176 K-HSGVVRNSA 185 (208)
T ss_dssp H-CTTTBBCTT
T ss_pred h-CCceeeccC
Confidence 3 334555544
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=1.8e-12 Score=124.51 Aligned_cols=162 Identities=16% Similarity=0.080 Sum_probs=96.7
Q ss_pred CCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCC-CCCCCCCcceEEeccCcCccccCccCCCCCCCCee
Q 042439 512 NTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPE-GGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQEL 590 (766)
Q Consensus 512 l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 590 (766)
.++|++|++++|...+..+..+..+++|++|++++|. +..++. .+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 4567777777775443333345677777777777774 344444 34567777777777777654444456777777777
Q ss_pred EecCCCCCCCCCC-CCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCc
Q 042439 591 TIGRGVELPSLEE-DGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLP 669 (766)
Q Consensus 591 ~l~~~~~l~~~~~-~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (766)
++++|......+. ...+++|++|++++|. +.... +..+..+++|+.|++++|. +. ...
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~--l~~~~--~~~~~~l~~L~~L~l~~N~--~~---------------~~~ 164 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ--LKSVP--DGVFDRLTSLQYIWLHDNP--WD---------------CTC 164 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCC--TTTTTTCTTCCEEECCSCC--BC---------------CCT
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCc--cceeC--HHHhccCCCccEEEecCCC--ee---------------cCC
Confidence 7777743332222 3556777777777752 11111 1225667777777777752 10 134
Q ss_pred cccceEEeccCCCCccchhhhccCCC
Q 042439 670 ASLTSLLIFSFPNLERLSSSIVDLQN 695 (766)
Q Consensus 670 ~~L~~L~l~~~~~l~~l~~~~~~l~~ 695 (766)
++|+.|+++.+..-..+|.+++.++.
T Consensus 165 ~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 165 PGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCHHHHHHHHHhCCceeeccCccccC
Confidence 56777777764444466766665554
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.37 E-value=1.6e-12 Score=144.81 Aligned_cols=175 Identities=17% Similarity=0.218 Sum_probs=138.8
Q ss_pred CCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCe
Q 042439 510 DNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQE 589 (766)
Q Consensus 510 ~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 589 (766)
..+++|+.|++++|. +..++ .+..+++|+.|+|++|. +..++. +..+++|+.|++++|.+.+ +| .+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 457889999999986 55665 58889999999999995 455554 7789999999999998654 44 6899999999
Q ss_pred eEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCc
Q 042439 590 LTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLP 669 (766)
Q Consensus 590 L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (766)
|++++|. +..++....+++|+.|++++|. +... ..+..+++|+.|+|++| .+..+++ + ..+
T Consensus 114 L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~--l~~l----~~l~~l~~L~~L~Ls~N--~l~~~~~-l---------~~l 174 (605)
T 1m9s_A 114 LSLEHNG-ISDINGLVHLPQLESLYLGNNK--ITDI----TVLSRLTKLDTLSLEDN--QISDIVP-L---------AGL 174 (605)
T ss_dssp EECTTSC-CCCCGGGGGCTTCSEEECCSSC--CCCC----GGGGSCTTCSEEECCSS--CCCCCGG-G---------TTC
T ss_pred EEecCCC-CCCCccccCCCccCEEECCCCc--cCCc----hhhcccCCCCEEECcCC--cCCCchh-h---------ccC
Confidence 9999995 4456777888999999999962 2211 23889999999999997 4445544 3 478
Q ss_pred cccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCC
Q 042439 670 ASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPE 712 (766)
Q Consensus 670 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 712 (766)
++|+.|++++ +.+..++ .+..+++|+.|++++|+ +...|.
T Consensus 175 ~~L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N~-l~~~p~ 214 (605)
T 1m9s_A 175 TKLQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQE-CLNKPI 214 (605)
T ss_dssp TTCCEEECCS-SCCCBCG-GGTTCTTCSEEECCSEE-EECCCC
T ss_pred CCCCEEECcC-CCCCCCh-HHccCCCCCEEEccCCc-CcCCcc
Confidence 8999999999 4888886 68899999999999975 444443
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=2.2e-12 Score=143.67 Aligned_cols=171 Identities=15% Similarity=0.140 Sum_probs=135.0
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEe
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRI 568 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 568 (766)
++|+.|++++|.... ++ .+..+++|+.|+|++|... .++. +..+++|+.|++++| .+..+| .+..+++|+.|++
T Consensus 43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEe
Confidence 779999999987544 33 4788999999999999644 4544 889999999999999 455665 5788999999999
Q ss_pred ccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCC
Q 042439 569 HGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDD 648 (766)
Q Consensus 569 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 648 (766)
++|.+.+ + ..+..+++|+.|++++|. +..++....+++|+.|++++|. +. ...+ +..+++|+.|+|++|
T Consensus 117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~--l~--~~~~--l~~l~~L~~L~Ls~N-- 185 (605)
T 1m9s_A 117 EHNGISD-I-NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQ--IS--DIVP--LAGLTKLQNLYLSKN-- 185 (605)
T ss_dssp TTSCCCC-C-GGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSC--CC--CCGG--GTTCTTCCEEECCSS--
T ss_pred cCCCCCC-C-ccccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCc--CC--Cchh--hccCCCCCEEECcCC--
Confidence 9998665 4 458899999999999995 4445667889999999999962 11 2223 889999999999997
Q ss_pred CCccCCCCcccccccCCCCCccccceEEeccCCCCccch
Q 042439 649 DMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLS 687 (766)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 687 (766)
.+..+|. + ..+++|+.|++++| .+...|
T Consensus 186 ~i~~l~~-l---------~~l~~L~~L~L~~N-~l~~~p 213 (605)
T 1m9s_A 186 HISDLRA-L---------AGLKNLDVLELFSQ-ECLNKP 213 (605)
T ss_dssp CCCBCGG-G---------TTCTTCSEEECCSE-EEECCC
T ss_pred CCCCChH-H---------ccCCCCCEEEccCC-cCcCCc
Confidence 4555543 2 46889999999995 666555
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=1.3e-11 Score=119.38 Aligned_cols=107 Identities=9% Similarity=0.042 Sum_probs=72.3
Q ss_pred CcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEec
Q 042439 490 SLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIH 569 (766)
Q Consensus 490 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 569 (766)
+|++|++++|......+..|..+++|++|++++|...+..+..+..+++|++|++++|......|..+..+++|+.|+++
T Consensus 58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 34444444444333334456667778888888776555545557778888888888875554445666677788888888
Q ss_pred cCcCccccCccCCCCCCCCeeEecCCC
Q 042439 570 GCERLEALPKGLHNLTSLQELTIGRGV 596 (766)
Q Consensus 570 ~~~~~~~~p~~~~~l~~L~~L~l~~~~ 596 (766)
+|.+.+..|..+..+++|++|++++|+
T Consensus 138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 138 DNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 887766667777778888888887774
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=1.2e-12 Score=130.59 Aligned_cols=119 Identities=15% Similarity=0.144 Sum_probs=60.8
Q ss_pred CcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEec
Q 042439 490 SLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIH 569 (766)
Q Consensus 490 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 569 (766)
++..++++++...+. + .+..+++|+.|++++|. +..++ .+..+++|++|++++| .+..++. +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence 345555555443322 2 24445666666666663 44444 4556666666666666 3344443 5555666666666
Q ss_pred cCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccc
Q 042439 570 GCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGN 618 (766)
Q Consensus 570 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N 618 (766)
+|.+.+ +|.. .. ++|++|++++| .++.++....+++|++|++++|
T Consensus 94 ~N~l~~-l~~~-~~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 94 RNRLKN-LNGI-PS-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNN 138 (263)
T ss_dssp SSCCSC-CTTC-CC-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTS
T ss_pred CCccCC-cCcc-cc-CcccEEEccCC-ccCCChhhcCcccccEEECCCC
Confidence 665433 3322 12 55666666655 2333333444445555555543
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=2.1e-11 Score=118.78 Aligned_cols=58 Identities=33% Similarity=0.460 Sum_probs=24.5
Q ss_pred ccccceEEeccCCCCccchhhhccCCCcceeecccCcCcccCCCCCc--ccccceeeecCCh
Q 042439 669 PASLTSLLIFSFPNLERLSSSIVDLQNLTELYLEDCPKLKYFPEKGL--PSSLLQLYIGGCP 728 (766)
Q Consensus 669 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~~~ 728 (766)
+++|++|++++ +.++.+|..+..+++|++|++++| .++.++...+ +++|++|++++||
T Consensus 111 l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 111 LVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred chhhCeEeccC-CcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 34444444444 344444444444444444444442 3334333211 3444444444443
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=1.1e-11 Score=119.82 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=97.3
Q ss_pred CCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCC-CCCCCCcceE
Q 042439 488 PPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEG-GLPCAKLSKL 566 (766)
Q Consensus 488 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L 566 (766)
|+++++|++++|......+..|..+++|+.|++++|...+..|..+..+++|++|++++| .+..+|.. +..+++|+.|
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEE
Confidence 466889999888877666667888899999999998765555778888999999999998 44566654 4568899999
Q ss_pred EeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCC-CCCCCCcceeEeccc
Q 042439 567 RIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEE-DGLPTNLHSLWIAGN 618 (766)
Q Consensus 567 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~N 618 (766)
++++|.+.+..|..+..+++|++|++++|......+. ...+++|++|++++|
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 9999887777777888888899999888854333322 234555666666654
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.30 E-value=1.7e-11 Score=128.50 Aligned_cols=102 Identities=13% Similarity=0.037 Sum_probs=53.7
Q ss_pred ceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCccccccc-CCCCCCEEEecCCCCccccCCCCCCCCCcceEEecc
Q 042439 492 KSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLH-NLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHG 570 (766)
Q Consensus 492 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 570 (766)
+.++++++. +..+|..+ .+.++.|++++|...+..+..+. .+++|++|++++|......+..+..+++|+.|++++
T Consensus 21 ~~l~c~~~~-l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSC-CSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCC-cCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 345555543 23344333 23466666666643332233344 566666666666633322223455566666666666
Q ss_pred CcCccccCccCCCCCCCCeeEecCCC
Q 042439 571 CERLEALPKGLHNLTSLQELTIGRGV 596 (766)
Q Consensus 571 ~~~~~~~p~~~~~l~~L~~L~l~~~~ 596 (766)
|.+....+..+..+++|++|++++|.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNH 123 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCc
Confidence 66544444455666666666666664
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=1.2e-11 Score=114.17 Aligned_cols=140 Identities=16% Similarity=0.054 Sum_probs=82.0
Q ss_pred CCCCCCEEEeeeCCCC-CcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCe
Q 042439 511 NNTSLETIDICYCGNL-KNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQE 589 (766)
Q Consensus 511 ~l~~L~~L~l~~~~~l-~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 589 (766)
..++|+.|++++|... +.+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3466777777776543 3566666667777777777774 3444 44566677777777777766556655566777777
Q ss_pred eEecCCCCCCCC--CCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCC
Q 042439 590 LTIGRGVELPSL--EEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPP 655 (766)
Q Consensus 590 L~l~~~~~l~~~--~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 655 (766)
|++++|...... .....+++|+.|++++|. ...........+..+++|++|++++| ....+|+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~ 164 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR--EDQEAPD 164 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET--TSCBCCS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC--Chhhccc
Confidence 777777432211 233455666666666641 11111000013667778888887775 3444443
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=4.4e-15 Score=164.41 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=47.1
Q ss_pred cceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEecc
Q 042439 491 LKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHG 570 (766)
Q Consensus 491 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 570 (766)
|+.|++++|...+ +|. ++.+++|+.|++++|. +..+|..+..+++|++|++++|. +..+| .+..+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCC
Confidence 4444444443322 333 4445555555555543 22445555555555555555542 23344 344455555555555
Q ss_pred CcCcccc-CccCCCCCCCCeeEecCC
Q 042439 571 CERLEAL-PKGLHNLTSLQELTIGRG 595 (766)
Q Consensus 571 ~~~~~~~-p~~~~~l~~L~~L~l~~~ 595 (766)
|.+.+.. |..++.+++|+.|++++|
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 5444333 444555555555555554
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.26 E-value=2.8e-11 Score=116.98 Aligned_cols=130 Identities=11% Similarity=-0.054 Sum_probs=74.5
Q ss_pred CCcceeeecCCCchhhhH-hhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEE
Q 042439 489 PSLKSLHVLSCSKLESIA-ERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLR 567 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 567 (766)
+.+++|++++|......+ ..|..+++|+.|++++|...+..+..+..+++|++|++++|......+..+..+++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 446777777766555433 3456677777777777654333344566677777777777644333333355566777777
Q ss_pred eccCcCccccCccCCCCCCCCeeEecCCCCCCCCC-CCCCCCCcceeEeccc
Q 042439 568 IHGCERLEALPKGLHNLTSLQELTIGRGVELPSLE-EDGLPTNLHSLWIAGN 618 (766)
Q Consensus 568 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~N 618 (766)
+++|.+.+..|..+..+++|++|++++|......+ ....+++|++|++++|
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 77776666556666666777777776664333212 1233444444444443
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.26 E-value=5.7e-11 Score=114.76 Aligned_cols=132 Identities=11% Similarity=0.093 Sum_probs=108.4
Q ss_pred CceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccc-
Q 042439 453 SLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPS- 531 (766)
Q Consensus 453 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~- 531 (766)
++++.|+++++ .++.+ +...|... ++|++|++++|......|..|..+++|++|++++|... .+|.
T Consensus 32 ~~l~~L~l~~n-~i~~i-~~~~~~~l----------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~ 98 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVI-PPGAFSPY----------KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKS 98 (220)
T ss_dssp TTCCEEECCSS-CCCEE-CTTSSTTC----------TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTT
T ss_pred cCCCEEECCCC-cCCCc-CHhHhhCC----------CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHh
Confidence 47899999986 45555 44344332 78999999999988888899999999999999999644 5554
Q ss_pred cccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCC
Q 042439 532 GLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVE 597 (766)
Q Consensus 532 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 597 (766)
.+..+++|++|++++|......|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+.
T Consensus 99 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 467899999999999966555566788899999999999998777677789999999999999953
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.25 E-value=1.2e-11 Score=129.77 Aligned_cols=153 Identities=12% Similarity=0.022 Sum_probs=107.2
Q ss_pred CCCcceeeecCCCchhhhHhhcC-CCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCC-CCCCCCCcce
Q 042439 488 PPSLKSLHVLSCSKLESIAERLD-NNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPE-GGLPCAKLSK 565 (766)
Q Consensus 488 ~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~ 565 (766)
|+.++.|++++|......+..+. .+++|+.|++++|...+..+..+..+++|++|++++|.. ..++. .+..+++|+.
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEV 116 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC-CcCCHHHhCCCcCCCE
Confidence 45688899988887766666676 888999999998865444455688889999999999854 44444 5677889999
Q ss_pred EEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCC-----CCCCCcceeEeccccccchhhhhcccccCCCCC--C
Q 042439 566 LRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEED-----GLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSS--L 638 (766)
Q Consensus 566 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~-----~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~--L 638 (766)
|++++|.+....|..+..+++|++|++++|... .++.. ..+++|+.|++++|. +...+ +..+..+++ +
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~--l~~l~--~~~~~~l~~~~l 191 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK--LKKLP--LTDLQKLPAWVK 191 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSC--CCCCC--HHHHHHSCHHHH
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCC--CCccC--HHHhhhccHhhc
Confidence 999998877776778888999999999988533 33322 346778888888752 11111 112445555 3
Q ss_pred cEEEEecc
Q 042439 639 RQLRISGC 646 (766)
Q Consensus 639 ~~L~l~~~ 646 (766)
+.|++++|
T Consensus 192 ~~l~l~~N 199 (361)
T 2xot_A 192 NGLYLHNN 199 (361)
T ss_dssp TTEECCSS
T ss_pred ceEEecCC
Confidence 67777775
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.22 E-value=5.2e-11 Score=118.58 Aligned_cols=142 Identities=23% Similarity=0.308 Sum_probs=95.3
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEe
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRI 568 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 568 (766)
++|++|++++|... .++ .+..+++|+.|++++|. +..++. +..+++|++|++++| .+..+|.... ++|+.|++
T Consensus 41 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEEEC
T ss_pred CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccEEEc
Confidence 45666666665433 233 46667888888888875 444554 778888888888887 4455655333 78888888
Q ss_pred ccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEecc
Q 042439 569 HGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGC 646 (766)
Q Consensus 569 ~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~ 646 (766)
++|.+.+ ++ .+..+++|++|++++|. ++.++....+++|++|++++|.. ... ..+..+++|+.|++++|
T Consensus 114 ~~N~l~~-~~-~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N~i--~~~----~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 114 DNNELRD-TD-SLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGNEI--TNT----GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CSSCCSB-SG-GGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTSCC--CBC----TTSTTCCCCCEEEEEEE
T ss_pred cCCccCC-Ch-hhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCCcC--cch----HHhccCCCCCEEeCCCC
Confidence 8887554 33 57788888888888884 44455556677788888877521 111 23777788888888876
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=7e-14 Score=154.77 Aligned_cols=197 Identities=14% Similarity=0.087 Sum_probs=120.4
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCC-------------CCCcccccccCCCCCCEEE-ecCCCCccccC
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCG-------------NLKNLPSGLHNLHQLQEIS-IGRCGNLESFP 554 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~l~~lp~~l~~l~~L~~L~-l~~~~~l~~l~ 554 (766)
++|+.|++++|.. +.+|..++++++|+.|++++|. ..+..|..+..+++|+.|+ ++.+ .+
T Consensus 349 ~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~---- 422 (567)
T 1dce_A 349 EQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YL---- 422 (567)
T ss_dssp TTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HH----
T ss_pred ccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-cc----
Confidence 6677888877654 4678778888888888876653 2334455556666666666 3332 11
Q ss_pred CCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcceeEeccccccchhhhhcccccCC
Q 042439 555 EGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHR 634 (766)
Q Consensus 555 ~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~ 634 (766)
.+|+.+.+.+|.+. .+|. ..|+.|++++| .++.+|..+.+++|+.|++++|. + ..+|..+..
T Consensus 423 ------~~L~~l~l~~n~i~-~l~~-----~~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~--l---~~lp~~~~~ 484 (567)
T 1dce_A 423 ------DDLRSKFLLENSVL-KMEY-----ADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNR--L---RALPPALAA 484 (567)
T ss_dssp ------HHHHHHHHHHHHHH-HHHH-----TTCSEEECTTS-CCSSCCCGGGGTTCCEEECCSSC--C---CCCCGGGGG
T ss_pred ------chhhhhhhhccccc-ccCc-----cCceEEEecCC-CCCCCcCccccccCcEeecCccc--c---cccchhhhc
Confidence 12233333333221 1111 13566666665 33334445555666666666642 1 133444778
Q ss_pred CCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccc--hhhhccCCCcceeecccCcCcccCCC
Q 042439 635 FSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERL--SSSIVDLQNLTELYLEDCPKLKYFPE 712 (766)
Q Consensus 635 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~l~~ 712 (766)
+++|+.|++++| .+..+| .+ ..+++|+.|++++ +.++.+ |..+..+++|++|++++|+ ++.+|+
T Consensus 485 l~~L~~L~Ls~N--~l~~lp-~l---------~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~ 550 (567)
T 1dce_A 485 LRCLEVLQASDN--ALENVD-GV---------ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEG 550 (567)
T ss_dssp CTTCCEEECCSS--CCCCCG-GG---------TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSS
T ss_pred CCCCCEEECCCC--CCCCCc-cc---------CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCcc
Confidence 888888888886 455566 33 3677888888888 578877 7788889999999999964 566554
Q ss_pred CC-----cccccceee
Q 042439 713 KG-----LPSSLLQLY 723 (766)
Q Consensus 713 ~~-----~~~~L~~L~ 723 (766)
.. .+++|+.|+
T Consensus 551 ~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 551 IQERLAEMLPSVSSIL 566 (567)
T ss_dssp CTTHHHHHCTTCSEEE
T ss_pred HHHHHHHHCcccCccC
Confidence 22 157777775
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.20 E-value=1.2e-11 Score=114.28 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=67.8
Q ss_pred CCcceeeecCCCch-hhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEE
Q 042439 489 PSLKSLHVLSCSKL-ESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLR 567 (766)
Q Consensus 489 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 567 (766)
++|++|++++|... ..+|..+..+++|+.|++++|. +..+ ..+..+++|++|++++|.....+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666655544 3445555556666666666654 3333 4455566666666666644333443333456666666
Q ss_pred eccCcCcccc-CccCCCCCCCCeeEecCCCCCCCCC----CCCCCCCcceeEeccc
Q 042439 568 IHGCERLEAL-PKGLHNLTSLQELTIGRGVELPSLE----EDGLPTNLHSLWIAGN 618 (766)
Q Consensus 568 l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~l~~~~----~~~~~~~L~~L~l~~N 618 (766)
+++|.+.+.. +..+..+++|++|++++|......+ ....+++|++|++++|
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 6666543321 1455566666666666664332222 2345566666666663
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.18 E-value=5.7e-12 Score=113.73 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=48.5
Q ss_pred CCcceeeecCCCch-hhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEE
Q 042439 489 PSLKSLHVLSCSKL-ESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLR 567 (766)
Q Consensus 489 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 567 (766)
+++++|++++|... +.+|..+..+++|+.|++++|... .+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555443 344444455555555555555322 22 3444455555555555533332333333344555555
Q ss_pred eccCcCccc-cCccCCCCCCCCeeEecCC
Q 042439 568 IHGCERLEA-LPKGLHNLTSLQELTIGRG 595 (766)
Q Consensus 568 l~~~~~~~~-~p~~~~~l~~L~~L~l~~~ 595 (766)
+++|.+.+. .+..+..+++|++|++++|
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 555543331 1234444455555555444
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.14 E-value=2.3e-11 Score=109.74 Aligned_cols=106 Identities=17% Similarity=0.067 Sum_probs=76.5
Q ss_pred CCCCCCEEEeeeCCCC-CcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCe
Q 042439 511 NNTSLETIDICYCGNL-KNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQE 589 (766)
Q Consensus 511 ~l~~L~~L~l~~~~~l-~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 589 (766)
..++|+.|++++|... +.+|..+..+++|++|++++|. +..+ ..+..+++|+.|++++|.+.+.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4577899999998755 4778777888999999999884 4444 55777888999999998877767777777888888
Q ss_pred eEecCCCCCCCC--CCCCCCCCcceeEeccc
Q 042439 590 LTIGRGVELPSL--EEDGLPTNLHSLWIAGN 618 (766)
Q Consensus 590 L~l~~~~~l~~~--~~~~~~~~L~~L~l~~N 618 (766)
|++++|...... .....+++|++|++++|
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 888888532211 23344555666666653
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=3e-10 Score=117.39 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=40.6
Q ss_pred CCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcc-eeecccCcCcccCCC
Q 042439 635 FSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLT-ELYLEDCPKLKYFPE 712 (766)
Q Consensus 635 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~-~L~l~~c~~l~~l~~ 712 (766)
+++|+.+++++| .+..+|+.. +...++|+++++.+ +++.|+. .+.+|++|+ .+.+.+ .++.++.
T Consensus 225 ~~~L~~l~L~~n--~i~~I~~~a--------F~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~ 290 (329)
T 3sb4_A 225 MPNLVSLDISKT--NATTIPDFT--------FAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEF 290 (329)
T ss_dssp CTTCCEEECTTB--CCCEECTTT--------TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECT
T ss_pred cCCCeEEECCCC--CcceecHhh--------hhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEch
Confidence 455556665554 344444432 34455555555554 2555554 455555565 555554 4555554
Q ss_pred CCc--ccccceeeecC
Q 042439 713 KGL--PSSLLQLYIGG 726 (766)
Q Consensus 713 ~~~--~~~L~~L~i~~ 726 (766)
..+ +++|+.+++.+
T Consensus 291 ~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATG 306 (329)
T ss_dssp TTTTTCTTEEEEEECS
T ss_pred hhhhCCccCCEEEeCC
Confidence 433 45555555544
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=2.8e-10 Score=107.33 Aligned_cols=109 Identities=14% Similarity=0.081 Sum_probs=80.2
Q ss_pred CCcceeeecCCCchhhhHh-hcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEE
Q 042439 489 PSLKSLHVLSCSKLESIAE-RLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLR 567 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 567 (766)
+++++|++++|......+. .++.+++|++|++++|...+..|..+..+++|++|++++|......+..+..+++|+.|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 4688888888766554443 377788888888888876665577778888888888888855444444566778888888
Q ss_pred eccCcCccccCccCCCCCCCCeeEecCCCC
Q 042439 568 IHGCERLEALPKGLHNLTSLQELTIGRGVE 597 (766)
Q Consensus 568 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 597 (766)
+++|.+.+..|..+..+++|++|++++|+.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 888887777777777888888888887753
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.11 E-value=5.4e-10 Score=115.51 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=24.3
Q ss_pred CCCccEEEecCCCCCcccCCC--CCCCCcceEEEccCCC
Q 042439 381 LSSLREIEIYGCWSLVSFPEV--ALPSKLRKIEICSCDA 417 (766)
Q Consensus 381 l~~L~~L~L~~~~~l~~~~~~--~~l~~L~~L~l~~~~~ 417 (766)
|++|++|++.+ .++.++.. ..+++|+++++.++..
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i 136 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTA 136 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSC
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCc
Confidence 88888888887 45556643 3478888888887763
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.07 E-value=2.9e-11 Score=138.21 Aligned_cols=180 Identities=16% Similarity=0.080 Sum_probs=103.5
Q ss_pred CcccccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCC
Q 042439 446 SSRRYTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGN 525 (766)
Q Consensus 446 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 525 (766)
+..+..++.|+.|+++++. +..+ +..+..+ ++|++|++++|... .+|..++.+++|+.|+|++|.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l------~~~~~~l------~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~- 281 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNI------SANIFKY------DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR- 281 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCC------CGGGGGC------CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-
T ss_pred hhhhccCCCCcEEECCCCC-CCCC------ChhhcCC------CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-
Confidence 3345667889999999874 3333 3222222 78999999998776 788888899999999999986
Q ss_pred CCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCC-CCeeEecCCCCCCCCCCC
Q 042439 526 LKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTS-LQELTIGRGVELPSLEED 604 (766)
Q Consensus 526 l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~L~l~~~~~l~~~~~~ 604 (766)
+..+|..+..+++|++|+|++| .++.+|..+..+++|+.|++++|.+.+.+|..+..+.. +..+++++|.....
T Consensus 282 l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~---- 356 (727)
T 4b8c_D 282 LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP---- 356 (727)
T ss_dssp CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC----
T ss_pred CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc----
Confidence 4478888999999999999998 55788888888999999999999988877766544322 22466777754333
Q ss_pred CCCCCcceeEeccccccchhhh----hcccccCCCCCCcEEEEecc
Q 042439 605 GLPTNLHSLWIAGNMEIWKSTI----EWGRGFHRFSSLRQLRISGC 646 (766)
Q Consensus 605 ~~~~~L~~L~l~~N~~~l~~~~----~~~~~~~~l~~L~~L~l~~~ 646 (766)
.+..|+.|+++.|-......+ ..+..+..+..+....+++|
T Consensus 357 -~p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~N 401 (727)
T 4b8c_D 357 -LPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYN 401 (727)
T ss_dssp -CCCC-----------------------------------------
T ss_pred -CccccceeEeecccccccccCCccccccchhhcccccceeeeecc
Confidence 345777888877411111111 11112344555555666665
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.04 E-value=1.2e-09 Score=102.79 Aligned_cols=106 Identities=18% Similarity=0.134 Sum_probs=57.7
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEe
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRI 568 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l 568 (766)
+++++|++++|... .+|..+..+++|+.|++++|...+..+..+..+++|++|++++|......+..+..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 45666666665543 44455666666666666666544333444556666666666666333222334555566666666
Q ss_pred ccCcCccccCccCCCCCCCCeeEecCC
Q 042439 569 HGCERLEALPKGLHNLTSLQELTIGRG 595 (766)
Q Consensus 569 ~~~~~~~~~p~~~~~l~~L~~L~l~~~ 595 (766)
++|.+....+..+..+++|++|++++|
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCC
Confidence 666544333334555555666655555
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.03 E-value=1.1e-09 Score=103.16 Aligned_cols=123 Identities=14% Similarity=0.054 Sum_probs=71.4
Q ss_pred ceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccc--cccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEec
Q 042439 492 KSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPS--GLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIH 569 (766)
Q Consensus 492 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~--~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 569 (766)
+.++++++.. +.+|..+ ..+++.|++++|.. +.++. .+..+++|++|++++|...+..|..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l-~~ip~~~--~~~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDI--PLHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCC-SSCCSCC--CTTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCc-CcCccCC--CCCCCEEECCCCcC-CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 4455555433 3344433 23677777777753 33333 26677777777777775544446666677777777777
Q ss_pred cCcCccccCccCCCCCCCCeeEecCCCCCCCCC-CCCCCCCcceeEeccc
Q 042439 570 GCERLEALPKGLHNLTSLQELTIGRGVELPSLE-EDGLPTNLHSLWIAGN 618 (766)
Q Consensus 570 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~N 618 (766)
+|.+.+..+..+..+++|++|++++|......+ ....+++|++|++++|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 777666656666777777777777764333222 1233344444444443
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.99 E-value=2.7e-08 Score=104.92 Aligned_cols=249 Identities=13% Similarity=0.154 Sum_probs=161.3
Q ss_pred ceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccc
Q 042439 454 LLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGL 533 (766)
Q Consensus 454 ~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l 533 (766)
+|+.+.+.. +++.+ +...|.. .+|+.+.+.+ .....-..+|.++++|+.+++.+|. +..++...
T Consensus 136 ~L~~i~l~~--~i~~I-~~~aF~~-----------~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~a 199 (401)
T 4fdw_A 136 QIAKVVLNE--GLKSI-GDMAFFN-----------STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPAST 199 (401)
T ss_dssp CCSEEECCT--TCCEE-CTTTTTT-----------CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTT
T ss_pred CccEEEeCC--CccEE-CHHhcCC-----------CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhh
Confidence 577777765 36666 5555554 3577777764 2222233568888889999988763 55665554
Q ss_pred cCCCCCCEEEecCCCCccccCC-CCCCCCCcceEEeccCcCccccC-ccCCCCCCCCeeEecCCCCCCCCCC--CCCCCC
Q 042439 534 HNLHQLQEISIGRCGNLESFPE-GGLPCAKLSKLRIHGCERLEALP-KGLHNLTSLQELTIGRGVELPSLEE--DGLPTN 609 (766)
Q Consensus 534 ~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~ 609 (766)
...++|+.+.+..+ +..++. .+..|++|+.+++..+ ...++ ..|.. .+|+.+.+.++ +..++. ...+++
T Consensus 200 F~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 200 FVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPE 272 (401)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTT
T ss_pred EeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCC
Confidence 45788888888754 555554 4557888888888764 34443 34445 78888888543 343433 245778
Q ss_pred cceeEecccccc---chhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccc
Q 042439 610 LHSLWIAGNMEI---WKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERL 686 (766)
Q Consensus 610 L~~L~l~~N~~~---l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 686 (766)
|+++++.+|... ....+ ...|.++++|+.+++.+ .+..++... +...++|+.+.+.+ +++.|
T Consensus 273 L~~l~l~~~~~~~~~~~~I~--~~aF~~c~~L~~l~l~~---~i~~I~~~a--------F~~c~~L~~l~lp~--~l~~I 337 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIH--PYCLEGCPKLARFEIPE---SIRILGQGL--------LGGNRKVTQLTIPA--NVTQI 337 (401)
T ss_dssp CCEEEEESSCCCCCTTCEEC--TTTTTTCTTCCEECCCT---TCCEECTTT--------TTTCCSCCEEEECT--TCCEE
T ss_pred CCEEEeCCccccCCcccEEC--HHHhhCCccCCeEEeCC---ceEEEhhhh--------hcCCCCccEEEECc--cccEE
Confidence 888888775322 00122 22388899999999885 356665543 45678899999965 58888
Q ss_pred hh-hhccCCCcceeecccCcCcccCCCCCc---ccccceeeecCChhHHHHhhccCCccccccc
Q 042439 687 SS-SIVDLQNLTELYLEDCPKLKYFPEKGL---PSSLLQLYIGGCPLIAEKCRKDGGQYWDLLT 746 (766)
Q Consensus 687 ~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~i~~~~~l~~~~~~~~~~~~~~i~ 746 (766)
+. .+.++ +|+++.+.++ .+..++...+ +.+++.|.|-.+. .+.+.. ...|...+
T Consensus 338 ~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~--~~~y~~--a~~W~~f~ 395 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES--VEKYKN--ANGWRDFT 395 (401)
T ss_dssp CTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG--HHHHHH--STTGGGGG
T ss_pred cHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH--HHHhhh--ccchhhhh
Confidence 76 77888 9999999985 5555655333 4678888888754 233332 23476554
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.98 E-value=5.1e-10 Score=103.94 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=40.6
Q ss_pred CCCCCCCEEEeeeCCCCCcccccccCC-CCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCC
Q 042439 510 DNNTSLETIDICYCGNLKNLPSGLHNL-HQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQ 588 (766)
Q Consensus 510 ~~l~~L~~L~l~~~~~l~~lp~~l~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 588 (766)
..+++|+.|++++|. +..+|. +..+ ++|++|++++|. +..+ ..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 345555555555553 223332 2222 366666666653 2333 3345555666666666554432222235556666
Q ss_pred eeEecCC
Q 042439 589 ELTIGRG 595 (766)
Q Consensus 589 ~L~l~~~ 595 (766)
+|++++|
T Consensus 92 ~L~L~~N 98 (176)
T 1a9n_A 92 ELILTNN 98 (176)
T ss_dssp EEECCSC
T ss_pred EEECCCC
Confidence 6666655
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.97 E-value=4.3e-08 Score=103.43 Aligned_cols=222 Identities=10% Similarity=0.127 Sum_probs=135.5
Q ss_pred ccCccccCCCCCCEEEEccCCCccccchhhhHHHHhhhhhccCcccEEEeecCCCCcccCcccCCCCCccEEEecCCCCC
Q 042439 316 SHNGLLQDSCSLKRLTIASCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSGCQGLVKLPQSSLSLSSLREIEIYGCWSL 395 (766)
Q Consensus 316 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l 395 (766)
+....|.++ +|+.+.+.+ .++.+....+.. .+|+.+.+.. .....-...|..|++|+.+++.+| .+
T Consensus 127 I~~~aF~~~-~L~~i~l~~--~i~~I~~~aF~~---------~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l 192 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNE--GLKSIGDMAFFN---------STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KI 192 (401)
T ss_dssp ECTTTTTTC-CCSEEECCT--TCCEECTTTTTT---------CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CC
T ss_pred ehHhhcccC-CccEEEeCC--CccEECHHhcCC---------CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cc
Confidence 344556664 688888765 366665554432 4688888875 323333457888899999999887 45
Q ss_pred cccCCCCC-CCCcceEEEccCCCCCccccccccCcchhHHHHHHhccccCcCcccccCCceeEEEecCCCCccccccCCC
Q 042439 396 VSFPEVAL-PSKLRKIEICSCDALKSLPEAWMCDTNSSLEILMEEGIQRSSSSRRYTSSLLEKLEIESCRSLTCIFSKNE 474 (766)
Q Consensus 396 ~~~~~~~~-l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 474 (766)
+.++...+ ..+|+.+.+..+ +..++. ..|..+++|+.+.+.. +++.+ +...
T Consensus 193 ~~I~~~aF~~~~L~~l~lp~~--l~~I~~-----------------------~aF~~~~~L~~l~l~~--~l~~I-~~~a 244 (401)
T 4fdw_A 193 TKLPASTFVYAGIEEVLLPVT--LKEIGS-----------------------QAFLKTSQLKTIEIPE--NVSTI-GQEA 244 (401)
T ss_dssp SEECTTTTTTCCCSEEECCTT--CCEECT-----------------------TTTTTCTTCCCEECCT--TCCEE-CTTT
T ss_pred eEechhhEeecccCEEEeCCc--hheehh-----------------------hHhhCCCCCCEEecCC--CccCc-cccc
Confidence 55553333 677888877633 444433 2345577788888765 35555 5555
Q ss_pred CccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCC----Ccc-cccccCCCCCCEEEecCCCC
Q 042439 475 LPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNL----KNL-PSGLHNLHQLQEISIGRCGN 549 (766)
Q Consensus 475 ~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l----~~l-p~~l~~l~~L~~L~l~~~~~ 549 (766)
|.. .+|+.+.+.+ .....-..+|.++++|+.+++.++... ..+ +..+..+++|+.+.+.. .
T Consensus 245 F~~-----------~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~ 310 (401)
T 4fdw_A 245 FRE-----------SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--S 310 (401)
T ss_dssp TTT-----------CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--T
T ss_pred ccc-----------CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--c
Confidence 544 4577777733 222223456777888888888775432 112 34566777888887774 3
Q ss_pred ccccCC-CCCCCCCcceEEeccCcCcccc-CccCCCCCCCCeeEecCCC
Q 042439 550 LESFPE-GGLPCAKLSKLRIHGCERLEAL-PKGLHNLTSLQELTIGRGV 596 (766)
Q Consensus 550 l~~l~~-~~~~~~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~ 596 (766)
+..++. .+..|++|+.+.+..+ ...+ +..|.++ +|+.+.+.+|.
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 555544 4455677777777554 2333 3456667 77777777763
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.97 E-value=7.2e-10 Score=102.92 Aligned_cols=60 Identities=13% Similarity=0.193 Sum_probs=38.3
Q ss_pred ccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCC
Q 042439 533 LHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRG 595 (766)
Q Consensus 533 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 595 (766)
+..+++|++|++++| .+..+|......++|+.|++++|.+.+. ..+..+++|++|++++|
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N 74 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN 74 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS
T ss_pred cCCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCC
Confidence 455778888888887 4445554222234777777777765443 45666777777777766
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.97 E-value=3.8e-09 Score=99.43 Aligned_cols=123 Identities=14% Similarity=0.043 Sum_probs=84.5
Q ss_pred ceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccC
Q 042439 492 KSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGC 571 (766)
Q Consensus 492 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~ 571 (766)
+.++++++.. ..+|..+ .++|+.|++++|. +..+|..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l-~~ip~~~--~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGL-KVLPKGI--PRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCC-SSCCSCC--CTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCC-CcCCCCC--CCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 3455554432 3444433 3578999999885 5577888888999999999998554444446777889999999998
Q ss_pred cCccccCccCCCCCCCCeeEecCCCCCCCCCC-CCCCCCcceeEeccc
Q 042439 572 ERLEALPKGLHNLTSLQELTIGRGVELPSLEE-DGLPTNLHSLWIAGN 618 (766)
Q Consensus 572 ~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~N 618 (766)
.+.+..|..+..+++|++|++++|......+. ...+++|+.|++++|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 87776667788888899999888853332221 234556666666654
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=3.1e-09 Score=98.78 Aligned_cols=107 Identities=16% Similarity=0.058 Sum_probs=64.0
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCC-CCCCCCCcceEE
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPE-GGLPCAKLSKLR 567 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~ 567 (766)
++|++|++++|......+..+..+++|++|++++|...+..+..+..+++|++|++++|.. ..++. .+..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-QSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc-cccCHHHhhCCcccCEEE
Confidence 4577777777665544444566677777777777654333233456677777777777643 33433 345566777777
Q ss_pred eccCcCccccCccCCCCCCCCeeEecCCC
Q 042439 568 IHGCERLEALPKGLHNLTSLQELTIGRGV 596 (766)
Q Consensus 568 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 596 (766)
+++|.+.+..+..+..+++|++|++++|+
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 77766543333334566677777776664
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.95 E-value=3.3e-10 Score=129.49 Aligned_cols=125 Identities=16% Similarity=0.169 Sum_probs=51.1
Q ss_pred CCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCC----CCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcc
Q 042439 489 PSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCG----NLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLS 564 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~ 564 (766)
+.++.|++.++.... .+..+.....|..+.+.... .+...+..+..+++|+.|++++|. +..+|..++.+++|+
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCC
Confidence 557777777665444 23222222223333222211 122335566677778888887774 446666666777777
Q ss_pred eEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCC-CCCCCCCcceeEecc
Q 042439 565 KLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLE-EDGLPTNLHSLWIAG 617 (766)
Q Consensus 565 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~ 617 (766)
.|+|++|.+. .+|..++.+++|++|++++|... .+| .++.+++|++|+|++
T Consensus 251 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 251 RLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCS
T ss_pred EEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCC
Confidence 7777777655 66777777777777777777433 232 223344444444444
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.88 E-value=1.4e-08 Score=94.22 Aligned_cols=83 Identities=19% Similarity=0.181 Sum_probs=50.5
Q ss_pred CCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCC-CCCCCCCcceEEeccCcCccccCccCCCCCCCCeeE
Q 042439 513 TSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPE-GGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELT 591 (766)
Q Consensus 513 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 591 (766)
++|+.|++++|...+..+..+..+++|++|++++|. +..++. .+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 567777777765433333345667777777777763 344443 345666777777777765544444456666777777
Q ss_pred ecCCC
Q 042439 592 IGRGV 596 (766)
Q Consensus 592 l~~~~ 596 (766)
+++|.
T Consensus 107 l~~N~ 111 (177)
T 2o6r_A 107 LDTNQ 111 (177)
T ss_dssp CCSSC
T ss_pred CcCCc
Confidence 76663
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.82 E-value=4.3e-11 Score=113.70 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=55.5
Q ss_pred cccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCCCCCCCcc
Q 042439 532 GLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEEDGLPTNLH 611 (766)
Q Consensus 532 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~ 611 (766)
.+..+++|++|++++| .+..+| .+..+++|+.|++++|.+. .+|..+..+++|++|++++|. +..++....+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHHHSS
T ss_pred HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCc-CCcCCccccCCCCC
Confidence 5666666666666666 334455 4555666666666666543 455555555666666666652 22233333344555
Q ss_pred eeEeccccccchhhhhcccccCCCCCCcEEEEecc
Q 042439 612 SLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGC 646 (766)
Q Consensus 612 ~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~ 646 (766)
+|++++|. +...+.. ..+..+++|++|++++|
T Consensus 119 ~L~l~~N~--i~~~~~~-~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 119 VLYMSNNK--ITNWGEI-DKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEEESEEE--CCCHHHH-HHHTTTTTCSEEEECSC
T ss_pred EEECCCCc--CCchhHH-HHHhcCCCCCEEEecCC
Confidence 55555531 1110100 11555666666666654
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.79 E-value=3.9e-11 Score=114.04 Aligned_cols=147 Identities=16% Similarity=0.230 Sum_probs=103.1
Q ss_pred cceeeecCCC-chhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEec
Q 042439 491 LKSLHVLSCS-KLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIH 569 (766)
Q Consensus 491 L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 569 (766)
++...+.+.. ..+.+|..+..+++|++|++++|. +..+| .+..+++|++|++++| .+..+|..+..+++|+.|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc
Confidence 4444444332 234455578889999999999986 44577 7888999999999998 556777756667899999999
Q ss_pred cCcCccccCccCCCCCCCCeeEecCCCCCCC--CCCCCCCCCcceeEeccccccchhh-----hhc-ccccCCCCCCcEE
Q 042439 570 GCERLEALPKGLHNLTSLQELTIGRGVELPS--LEEDGLPTNLHSLWIAGNMEIWKST-----IEW-GRGFHRFSSLRQL 641 (766)
Q Consensus 570 ~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~L~~L~l~~N~~~l~~~-----~~~-~~~~~~l~~L~~L 641 (766)
+|.+.+ +| .+..+++|++|++++|..... +.....+++|++|++++|...-... ..+ ...+..+++|+.|
T Consensus 102 ~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 102 YNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 998654 55 578889999999999853321 1235678899999999962111100 000 1126788899988
Q ss_pred E
Q 042439 642 R 642 (766)
Q Consensus 642 ~ 642 (766)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 7
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.75 E-value=4.1e-07 Score=96.32 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=50.0
Q ss_pred cCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcCcccC
Q 042439 632 FHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPKLKYF 710 (766)
Q Consensus 632 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l 710 (766)
+..+.+|+.+.+.++ +..+++.. +...++|+.+.+.+ .++.|.. .+.+|++|+.+.+..+ ++.+
T Consensus 293 F~~~~~L~~i~l~~~---i~~I~~~a--------F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I 357 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS---VKFIGEEA--------FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKI 357 (394)
T ss_dssp TTTCTTCCEEEECTT---CCEECTTT--------TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEE
T ss_pred ccccccccccccccc---cceechhh--------hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEe
Confidence 566677777777552 44444322 34456677777653 4666665 6777778888777653 6667
Q ss_pred CCCCc--ccccceeeecC
Q 042439 711 PEKGL--PSSLLQLYIGG 726 (766)
Q Consensus 711 ~~~~~--~~~L~~L~i~~ 726 (766)
+...+ +++|+.+++..
T Consensus 358 ~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTTTBTTCTTCCEEEEEG
T ss_pred hHHHhhCCCCCCEEEECC
Confidence 66554 56777777754
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.73 E-value=3.5e-08 Score=90.69 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=49.8
Q ss_pred CCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCC-CCCCCCcceEEeccCcCccccCccCCCCCCCCeeE
Q 042439 513 TSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEG-GLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELT 591 (766)
Q Consensus 513 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 591 (766)
++|+.|++++|...+..|..+..+++|++|++++|. +..+|.. +..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 556666666665444445556666667777776663 3444443 34566677777766665544444566666777777
Q ss_pred ecCCC
Q 042439 592 IGRGV 596 (766)
Q Consensus 592 l~~~~ 596 (766)
+++|+
T Consensus 109 L~~N~ 113 (170)
T 3g39_A 109 LLNNP 113 (170)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 76664
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.71 E-value=4.7e-07 Score=95.87 Aligned_cols=78 Identities=21% Similarity=0.312 Sum_probs=47.9
Q ss_pred hhcCCCCCCCEEEeeeCCCCCcc-cccccCCCCCCEEEecCCCCccccCC-CCCCCCCcceEEeccCcCccccCccCCCC
Q 042439 507 ERLDNNTSLETIDICYCGNLKNL-PSGLHNLHQLQEISIGRCGNLESFPE-GGLPCAKLSKLRIHGCERLEALPKGLHNL 584 (766)
Q Consensus 507 ~~~~~l~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~~~~~p~~~~~l 584 (766)
.+|.++++|+.+++.++ +..+ ..++.++++|+.+.+..+ +..++. .+..|++|+.+++..+ ...+...+.++
T Consensus 314 ~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c 387 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR--LEQYRYDFEDT 387 (394)
T ss_dssp TTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG--GGGGGGGBCTT
T ss_pred hhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC--CEEhhheecCC
Confidence 34666777777777542 4444 345667778888877654 445544 4556778888887654 23334456677
Q ss_pred CCCCee
Q 042439 585 TSLQEL 590 (766)
Q Consensus 585 ~~L~~L 590 (766)
++|+.+
T Consensus 388 ~~L~~I 393 (394)
T 4fs7_A 388 TKFKWI 393 (394)
T ss_dssp CEEEEE
T ss_pred CCCcEE
Confidence 777654
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.70 E-value=4.9e-08 Score=90.02 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=50.8
Q ss_pred CCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCC-CCCCCCcceEEeccCcCccccCccCCCCCCCCeeE
Q 042439 513 TSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEG-GLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELT 591 (766)
Q Consensus 513 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 591 (766)
++|+.|++++|...+..|..+..+++|++|++++| .+..+|.. +..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 56666666666544444555666677777777766 34445543 34566777777777665543333466677777777
Q ss_pred ecCCC
Q 042439 592 IGRGV 596 (766)
Q Consensus 592 l~~~~ 596 (766)
+++|+
T Consensus 112 L~~N~ 116 (174)
T 2r9u_A 112 LYNNP 116 (174)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 77664
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.66 E-value=1.1e-07 Score=87.51 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=49.1
Q ss_pred CEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCC
Q 042439 516 ETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRG 595 (766)
Q Consensus 516 ~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~ 595 (766)
+.++++++. ++.+|..+. ++|++|++++|...+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 566776653 566666553 67777777777544433555666777777777777655433334566777777777776
Q ss_pred C
Q 042439 596 V 596 (766)
Q Consensus 596 ~ 596 (766)
.
T Consensus 92 ~ 92 (174)
T 2r9u_A 92 H 92 (174)
T ss_dssp C
T ss_pred c
Confidence 3
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.65 E-value=1.2e-07 Score=87.13 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=49.1
Q ss_pred CCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecC
Q 042439 515 LETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGR 594 (766)
Q Consensus 515 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 594 (766)
.+.++++++. +..+|..+ .++|++|++++|...+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4566666653 55566544 36777777777744333355566677777777777765544444456677777777777
Q ss_pred CC
Q 042439 595 GV 596 (766)
Q Consensus 595 ~~ 596 (766)
|.
T Consensus 88 N~ 89 (170)
T 3g39_A 88 NQ 89 (170)
T ss_dssp SC
T ss_pred Cc
Confidence 64
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.38 E-value=6.8e-07 Score=92.93 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=42.9
Q ss_pred CCcceeeecC-CCchhhhHhhcCCCCCCCEEEeeeCCCCCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEE
Q 042439 489 PSLKSLHVLS-CSKLESIAERLDNNTSLETIDICYCGNLKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLR 567 (766)
Q Consensus 489 ~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 567 (766)
++|++|++++ |......+..|..+++|+.|+|++|...+..|..+.++++|++|+|++| .+..+|........|+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCceEEE
Confidence 4556666654 4444444455555666666666665433333444555666666666655 3334444333222355556
Q ss_pred eccCcC
Q 042439 568 IHGCER 573 (766)
Q Consensus 568 l~~~~~ 573 (766)
+.+|++
T Consensus 110 l~~N~~ 115 (347)
T 2ifg_A 110 LSGNPL 115 (347)
T ss_dssp CCSSCC
T ss_pred eeCCCc
Confidence 555554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.37 E-value=1.3e-08 Score=106.40 Aligned_cols=14 Identities=21% Similarity=0.116 Sum_probs=7.1
Q ss_pred CCCCCCcEEEEecc
Q 042439 633 HRFSSLRQLRISGC 646 (766)
Q Consensus 633 ~~l~~L~~L~l~~~ 646 (766)
...++|++|++++|
T Consensus 236 ~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 236 REHPSLELLHLYFN 249 (372)
T ss_dssp HHCSSCCEEECTTS
T ss_pred HhCCCCCEEeccCC
Confidence 34455555555554
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.34 E-value=6.5e-07 Score=92.53 Aligned_cols=188 Identities=18% Similarity=0.152 Sum_probs=92.7
Q ss_pred cCCCCCCCEEEeeeCCC---------CCcccccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCc
Q 042439 509 LDNNTSLETIDICYCGN---------LKNLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPK 579 (766)
Q Consensus 509 ~~~l~~L~~L~l~~~~~---------l~~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~ 579 (766)
...+++|+.|.+..... .+.++..+..+|+|+.|.+++|..+ .++. + ..++|+.|++..|.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 44566777777754321 1123444566788888888776322 2333 2 367888888887765433222
Q ss_pred cC--CCCCCCCeeEecCCCCC--CCCCCCCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCC
Q 042439 580 GL--HNLTSLQELTIGRGVEL--PSLEEDGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPP 655 (766)
Q Consensus 580 ~~--~~l~~L~~L~l~~~~~l--~~~~~~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 655 (766)
.+ ..+|+|++|+++.+... .... ... ...... ...+|+|+.|++.+|... ...+.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~----~~~--------------l~~~l~--~~~~p~Lr~L~L~~~~i~-~~~~~ 270 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGD----MNV--------------FRPLFS--KDRFPNLKWLGIVDAEEQ-NVVVE 270 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSC----GGG--------------TGGGSC--TTTCTTCCEEEEESCTTH-HHHHH
T ss_pred HHHHccCCCCcEEEEeccccccccchh----HHH--------------HHHHHh--cCCCCCcCEEeCCCCCCc-hHHHH
Confidence 22 35778888877532110 0000 000 000000 124566777777664211 00000
Q ss_pred CcccccccCCCCCccccceEEeccCCCCcc-----chhhhccCCCcceeecccCcCcccCCCCCccccc-ceeeecCCh
Q 042439 656 KADDIRLGTALPLPASLTSLLIFSFPNLER-----LSSSIVDLQNLTELYLEDCPKLKYFPEKGLPSSL-LQLYIGGCP 728 (766)
Q Consensus 656 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L-~~L~i~~~~ 728 (766)
.+ .. ...+++|++|+++. +.++. ++..+..+++|+.|++++|. +..-....+-..+ ..++++++.
T Consensus 271 ~l-----a~-a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 271 MF-----LE-SDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HH-----HH-CSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHHHHCCSEEECCSBC
T ss_pred HH-----Hh-CccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHHHHcCCEEEecCCc
Confidence 00 00 01356777777765 45654 34445667888888888863 3321111111112 456666654
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.33 E-value=3.8e-05 Score=81.10 Aligned_cols=83 Identities=16% Similarity=0.280 Sum_probs=51.3
Q ss_pred cCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcCcccC
Q 042439 632 FHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPKLKYF 710 (766)
Q Consensus 632 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l 710 (766)
|.++++|+.+.+.. .+..+++.. +....+|+++.+.+ .++.|.. .+.+|.+|+++.+-. .++.+
T Consensus 284 F~~c~~L~~i~l~~---~i~~I~~~a--------F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I 348 (394)
T 4gt6_A 284 FMNCPALQDIEFSS---RITELPESV--------FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKI 348 (394)
T ss_dssp TTTCTTCCEEECCT---TCCEECTTT--------TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBC
T ss_pred cccccccccccCCC---cccccCcee--------ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEE
Confidence 66667777776654 344444432 34456677777654 4666655 667777777777754 36666
Q ss_pred CCCCc--ccccceeeecCChh
Q 042439 711 PEKGL--PSSLLQLYIGGCPL 729 (766)
Q Consensus 711 ~~~~~--~~~L~~L~i~~~~~ 729 (766)
....+ +++|+.+++.++..
T Consensus 349 ~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 349 PESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CGGGGTTCTTCCEEEESSCHH
T ss_pred hHhHhhCCCCCCEEEECCcee
Confidence 66444 56777777777643
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.33 E-value=2.4e-08 Score=104.23 Aligned_cols=87 Identities=20% Similarity=0.198 Sum_probs=44.7
Q ss_pred CCcceeeecCCCchh----hhHhhcCCCCCCCEEEeeeCCCCCc----ccccccCCCCCCEEEecCCCCcc----ccCCC
Q 042439 489 PSLKSLHVLSCSKLE----SIAERLDNNTSLETIDICYCGNLKN----LPSGLHNLHQLQEISIGRCGNLE----SFPEG 556 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~----lp~~l~~l~~L~~L~l~~~~~l~----~l~~~ 556 (766)
++|++|++++|.... .++..+...++|++|++++|..... ++..+...++|++|++++|.... .++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 345555555555433 2344445566666666666642211 23344555666777776664322 12222
Q ss_pred CCCCCCcceEEeccCcCcc
Q 042439 557 GLPCAKLSKLRIHGCERLE 575 (766)
Q Consensus 557 ~~~~~~L~~L~l~~~~~~~ 575 (766)
+...++|++|++++|.+..
T Consensus 235 L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHCSSCCEEECTTSSCCH
T ss_pred HHhCCCCCEEeccCCCCCH
Confidence 2234567777777776543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.30 E-value=1.6e-06 Score=90.08 Aligned_cols=102 Identities=23% Similarity=0.207 Sum_probs=74.3
Q ss_pred eeeecCCCchhhhHhhcCCCCCCCEEEeee-CCCCCcc-cccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEecc
Q 042439 493 SLHVLSCSKLESIAERLDNNTSLETIDICY-CGNLKNL-PSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHG 570 (766)
Q Consensus 493 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~l~~l-p~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 570 (766)
.++.+++..+..+|. +..+++|+.|+|++ |. +..+ +..+..+++|++|+|++|......|..+..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 456666645667888 88888999999986 65 4444 46788899999999999854444444567788999999999
Q ss_pred CcCccccCccCCCCCCCCeeEecCCCC
Q 042439 571 CERLEALPKGLHNLTSLQELTIGRGVE 597 (766)
Q Consensus 571 ~~~~~~~p~~~~~l~~L~~L~l~~~~~ 597 (766)
|.+.+..+..+..++ |+.|++.+|+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCc
Confidence 886654444444444 89999988853
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.24 E-value=4.4e-05 Score=80.63 Aligned_cols=240 Identities=12% Similarity=0.152 Sum_probs=115.5
Q ss_pred ccccCCceeEEEecCC--CCccccccCCCCccccccccccCCCCCcceeeecCCCchhhhHhhcCCCCCCCEEEeeeCCC
Q 042439 448 RRYTSSLLEKLEIESC--RSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLESIAERLDNNTSLETIDICYCGN 525 (766)
Q Consensus 448 ~~~~~~~L~~L~l~~c--~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 525 (766)
.|..+.+|+.+.+... ..++.+ ....|... .+|+.+.+..+ ....-...|..+.+|+.+.+...
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~I-g~~aF~~c----------~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-- 147 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKI-GRQAFMFC----------SELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-- 147 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEE-CTTTTTTC----------TTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT--
T ss_pred HhhCCccCceEeecCCCCCeeeEe-chhhchhc----------ccceeeccCCc-cceehhhhhhhhcccccccccce--
Confidence 4556788888888653 345555 55555443 44554444321 11112244666777777777542
Q ss_pred CCcc-cccccCCCCCCEEEecCCCCccccCCCCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCC-
Q 042439 526 LKNL-PSGLHNLHQLQEISIGRCGNLESFPEGGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEE- 603 (766)
Q Consensus 526 l~~l-p~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~- 603 (766)
...+ ...+..+.+|+.+.+..+ +..+....+...+|+.+.+.... .......+..+.+++........... ...
T Consensus 148 ~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~-~~~~ 223 (394)
T 4gt6_A 148 VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPA-IDNV 223 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCB-SSSC
T ss_pred eeeecccceecccccccccccce--eeEeccccccccceeEEEECCcc-cccccchhhhccccceeccccccccc-ccce
Confidence 2222 234556677777777543 44444444444566666665432 11112344555555555443321100 000
Q ss_pred --------------CCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcccccccCCCCCc
Q 042439 604 --------------DGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLP 669 (766)
Q Consensus 604 --------------~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (766)
......+..+.+..+ ++..+. ..|..+.+|+.+.+.++ ...+.... +...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~ip~~---v~~i~~--~aF~~c~~L~~i~lp~~---~~~I~~~a--------F~~c 287 (394)
T 4gt6_A 224 LYEKSANGDYALIRYPSQREDPAFKIPNG---VARIET--HAFDSCAYLASVKMPDS---VVSIGTGA--------FMNC 287 (394)
T ss_dssp EEEECTTSCEEEEECCTTCCCSEEECCTT---EEEECT--TTTTTCSSCCEEECCTT---CCEECTTT--------TTTC
T ss_pred eecccccccccccccccccccceEEcCCc---ceEccc--ceeeecccccEEecccc---cceecCcc--------cccc
Confidence 000112222222221 111111 12566666666666542 22232221 2344
Q ss_pred cccceEEeccCCCCccchh-hhccCCCcceeecccCcCcccCCCCCc--ccccceeeec
Q 042439 670 ASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPKLKYFPEKGL--PSSLLQLYIG 725 (766)
Q Consensus 670 ~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~ 725 (766)
++|+.+.+.. .++.++. .+.+|++|+++.+.+ .++.+....+ +.+|+.+.+-
T Consensus 288 ~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 288 PALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp TTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEC
T ss_pred cccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEEC
Confidence 5666666642 5566655 566666677666654 2555555444 4556666553
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=1.9e-06 Score=89.00 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=18.5
Q ss_pred cCCCCCccEEEecCCCCCcccCCCCCCCCcceEEEccCC
Q 042439 378 SLSLSSLREIEIYGCWSLVSFPEVALPSKLRKIEICSCD 416 (766)
Q Consensus 378 ~~~l~~L~~L~L~~~~~l~~~~~~~~l~~L~~L~l~~~~ 416 (766)
+..+|+|+.|+|++|... .++.. ..++|+.|++..|.
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGG 204 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSB
T ss_pred HhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCC
Confidence 344566666666655222 12222 25566666665544
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.20 E-value=0.00065 Score=71.16 Aligned_cols=136 Identities=14% Similarity=0.137 Sum_probs=76.2
Q ss_pred CCCCCCCcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCCCC--CCCCCcceeEeccccccchhhhhcccccC
Q 042439 556 GGLPCAKLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLEED--GLPTNLHSLWIAGNMEIWKSTIEWGRGFH 633 (766)
Q Consensus 556 ~~~~~~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~N~~~l~~~~~~~~~~~ 633 (766)
.+..+.+|+.+.+..+- .......+..+..|+.+.+..+ ++.+... ..+.+|+.+.+..+ ++..+... |.
T Consensus 212 ~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~---i~~i~~~a--F~ 283 (379)
T 4h09_A 212 GFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK---VKTVPYLL--CS 283 (379)
T ss_dssp TTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC---CSEECTTT--TT
T ss_pred ccccccccceeeeccce-eEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc---ceeccccc--cc
Confidence 34445667666665431 1122234566777777777553 3333222 33556666666552 22222222 77
Q ss_pred CCCCCcEEEEeccCCCCccCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcCcccCCC
Q 042439 634 RFSSLRQLRISGCDDDMVSFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPKLKYFPE 712 (766)
Q Consensus 634 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~ 712 (766)
.+++|+.+.+.++ .+..+++.. +....+|+.+.+.. .++.|.. .+.+|++|+++.+.. .++.+..
T Consensus 284 ~c~~L~~i~l~~~--~i~~I~~~a--------F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 284 GCSNLTKVVMDNS--AIETLEPRV--------FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIES 349 (379)
T ss_dssp TCTTCCEEEECCT--TCCEECTTT--------TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECT
T ss_pred ccccccccccccc--ccceehhhh--------hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEch
Confidence 7788888887653 344454432 44556777777753 4677765 677778888777754 2555554
Q ss_pred C
Q 042439 713 K 713 (766)
Q Consensus 713 ~ 713 (766)
.
T Consensus 350 ~ 350 (379)
T 4h09_A 350 G 350 (379)
T ss_dssp T
T ss_pred h
Confidence 3
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=8.6e-07 Score=80.03 Aligned_cols=92 Identities=9% Similarity=0.047 Sum_probs=55.3
Q ss_pred CCeeEEEEecCCCCC-CCCCCCCcCcccceeecCCCCceecCcccccCCCCCCCCCccEEeccCccchhhhhccCCCccc
Q 042439 123 PNLVTLKFENCDMCT-ALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDPPIPFPCLETLIFENMREWEDWISHGSSQRV 201 (766)
Q Consensus 123 ~~L~~L~L~~~~~~~-~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 201 (766)
.+|++|++++|.+.. .+..+.++++|++|+|++|..+++.+....+.. ....++|++|++++|+.+.+.. + ..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~-~~~~~~L~~L~Ls~C~~ITD~G----l-~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL-ENLQKSMLEMEIISCGNVTDKG----I-IA 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC-HHHHHHCCEEEEESCTTCCHHH----H-HH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc-ccccCCCCEEEcCCCCcCCHHH----H-HH
Confidence 468888888887432 244567778888888888877776654433320 0002357777777776554433 2 12
Q ss_pred cccCcccceeccccccccc
Q 042439 202 VEGFPKLRELHILRCSKLK 220 (766)
Q Consensus 202 ~~~l~~L~~L~l~~c~~l~ 220 (766)
+..+++|++|++++|+.++
T Consensus 135 L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGGCTTCCEEEEESCTTCC
T ss_pred HhcCCCCCEEECCCCCCCC
Confidence 3456777777777776555
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.90 E-value=0.0011 Score=69.49 Aligned_cols=125 Identities=18% Similarity=0.173 Sum_probs=79.3
Q ss_pred CCCCCCCCeeEecCCCCCCCCCC--CCCCCCcceeEeccccccchhhhhcccccCCCCCCcEEEEeccCCCCccCCCCcc
Q 042439 581 LHNLTSLQELTIGRGVELPSLEE--DGLPTNLHSLWIAGNMEIWKSTIEWGRGFHRFSSLRQLRISGCDDDMVSFPPKAD 658 (766)
Q Consensus 581 ~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~N~~~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 658 (766)
+..+..|+.+.+..+ +..+.. ...+..|+.+.+..+ ++..+... +.++.+|+.+.+.. .+..++...
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~---v~~I~~~a--F~~~~~l~~i~l~~---~i~~i~~~a- 281 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN---VTSIGSFL--LQNCTALKTLNFYA---KVKTVPYLL- 281 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT---CCEECTTT--TTTCTTCCEEEECC---CCSEECTTT-
T ss_pred cccccccceeeeccc--eeEEccccccCCccceEEEcCCC---ccEeCccc--cceeehhccccccc---cceeccccc-
Confidence 344556666665443 222221 234567777777663 22222222 77788888888865 244454432
Q ss_pred cccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcCcccCCCCCc--ccccceeeecC
Q 042439 659 DIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPKLKYFPEKGL--PSSLLQLYIGG 726 (766)
Q Consensus 659 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~ 726 (766)
+...++|+.+.+.+ +.++.|+. .+.+|++|+.+.+.. .++.+....+ +.+|+.+.+..
T Consensus 282 -------F~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 282 -------CSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp -------TTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred -------cccccccccccccc-cccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 45678899999976 57888877 788899999999965 4777777555 57787777754
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=9.8e-06 Score=73.09 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=39.5
Q ss_pred CcceEEeccCcCccccCccCCCCCCCCeeEecCCCCCCCCC--CCCC----CCCcceeEeccccccchhhhhcccccCCC
Q 042439 562 KLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGVELPSLE--EDGL----PTNLHSLWIAGNMEIWKSTIEWGRGFHRF 635 (766)
Q Consensus 562 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~~--~~~~----~~~L~~L~l~~N~~~l~~~~~~~~~~~~l 635 (766)
+|+.|++++|.+...--..+..+++|++|++++|..++.-. .+.. .++|++|++++ |..++-.+-.. +..+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~-C~~ITD~Gl~~--L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIIS-CGNVTDKGIIA--LHHF 138 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEES-CTTCCHHHHHH--GGGC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCC-CCcCCHHHHHH--HhcC
Confidence 56666666666443333345566777777777775544211 0111 12455555555 44443222211 3445
Q ss_pred CCCcEEEEec
Q 042439 636 SSLRQLRISG 645 (766)
Q Consensus 636 ~~L~~L~l~~ 645 (766)
++|+.|++++
T Consensus 139 ~~L~~L~L~~ 148 (176)
T 3e4g_A 139 RNLKYLFLSD 148 (176)
T ss_dssp TTCCEEEEES
T ss_pred CCCCEEECCC
Confidence 5555555555
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.43 E-value=5e-05 Score=70.39 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=29.3
Q ss_pred CCcceeeecCC-Cchh----hhHhhcCCCCCCCEEEeeeCCCCCc----ccccccCCCCCCEEEecCCC
Q 042439 489 PSLKSLHVLSC-SKLE----SIAERLDNNTSLETIDICYCGNLKN----LPSGLHNLHQLQEISIGRCG 548 (766)
Q Consensus 489 ~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~----lp~~l~~l~~L~~L~l~~~~ 548 (766)
+.|++|++++| .... .+...+...++|++|++++|..... +...+...++|++|++++|.
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 44555555555 3322 2334445555666666666543221 12233344556666666653
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.31 E-value=4.4e-05 Score=70.78 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=74.1
Q ss_pred ccCCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchh----hhHhhcCCCCCCCEEEeeeCCC
Q 042439 450 YTSSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLE----SIAERLDNNTSLETIDICYCGN 525 (766)
Q Consensus 450 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~ 525 (766)
...+.|++|++++|..+..- ....+...+.. .++|++|++++|.... .+...+...++|++|++++|.+
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~-g~~~l~~~L~~------~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVP-TLKACAEALKT------NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHH-HHHHHHHHHTT------CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred hcCCCCCEEEecCCCCCCHH-HHHHHHHHHHh------CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 44678999999998455432 11111111111 2789999999998765 3455666778999999999975
Q ss_pred CCc----ccccccCCCCCCEEEe--cCCCCccc----cCCCCCCCCCcceEEeccCcC
Q 042439 526 LKN----LPSGLHNLHQLQEISI--GRCGNLES----FPEGGLPCAKLSKLRIHGCER 573 (766)
Q Consensus 526 l~~----lp~~l~~l~~L~~L~l--~~~~~l~~----l~~~~~~~~~L~~L~l~~~~~ 573 (766)
... +...+...++|++|++ ++|..-.. +...+...++|++|++++|.+
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 432 3556677788999999 66744321 222222345666666666653
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.26 E-value=8.4e-05 Score=72.51 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=56.5
Q ss_pred cCCCCCCCEEEeeeCCCCC--cccccccCCCCCCEEEecCCCCccccCCCCCCCC--CcceEEeccCcCccccCc-----
Q 042439 509 LDNNTSLETIDICYCGNLK--NLPSGLHNLHQLQEISIGRCGNLESFPEGGLPCA--KLSKLRIHGCERLEALPK----- 579 (766)
Q Consensus 509 ~~~l~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~--~L~~L~l~~~~~~~~~p~----- 579 (766)
..++++|+.|+|++|...+ .+|..+..+++|+.|+|++|.. ..+.. +..+. +|++|++++|++.+.+|.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCchh-hhhcccCCcceEEccCCcCccccCcchhHH
Confidence 3568899999999987554 4455666899999999999844 43321 22233 888889988887765542
Q ss_pred --cCCCCCCCCeeE
Q 042439 580 --GLHNLTSLQELT 591 (766)
Q Consensus 580 --~~~~l~~L~~L~ 591 (766)
.+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 345677887775
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.72 E-value=0.00062 Score=66.35 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=53.5
Q ss_pred CCcceeeecCCCchh--hhHhhcCCCCCCCEEEeeeCCCCCcccccccCCC--CCCEEEecCCCCccccCC-------CC
Q 042439 489 PSLKSLHVLSCSKLE--SIAERLDNNTSLETIDICYCGNLKNLPSGLHNLH--QLQEISIGRCGNLESFPE-------GG 557 (766)
Q Consensus 489 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~lp~~l~~l~--~L~~L~l~~~~~l~~l~~-------~~ 557 (766)
++|+.|++++|.... .++..+..+++|+.|+|++|...+. ..+..+. +|++|++++|+....+|. .+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 567777777777655 5566667788999999998864433 2344444 899999999987665552 23
Q ss_pred CCCCCcceEEe
Q 042439 558 LPCAKLSKLRI 568 (766)
Q Consensus 558 ~~~~~L~~L~l 568 (766)
..+|+|+.||-
T Consensus 248 ~~~P~L~~LDg 258 (267)
T 3rw6_A 248 ERFPKLLRLDG 258 (267)
T ss_dssp HHCTTCCEESS
T ss_pred HHCcccCeECC
Confidence 45778887764
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.66 E-value=0.094 Score=44.68 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=37.8
Q ss_pred EEEEeccCCCCc--cCCCCcccccccCCCCCccccceEEeccCCCCccchh-hhccCCCcceeecccCcC
Q 042439 640 QLRISGCDDDMV--SFPPKADDIRLGTALPLPASLTSLLIFSFPNLERLSS-SIVDLQNLTELYLEDCPK 706 (766)
Q Consensus 640 ~L~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~ 706 (766)
.++.+++ .+. .+|.. .+++|+.|+|++ |.|+.|+. .+..+++|++|++++|+.
T Consensus 12 ~v~Cs~~--~L~~~~vP~~-----------lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRR--GLTWASLPTA-----------FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSS--CCCTTTSCSC-----------CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCC--CCccccCCCC-----------CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 4555553 344 67753 456788888888 68888887 567788888888888763
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.84 E-value=0.25 Score=41.99 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=19.0
Q ss_pred CcceEEeccCcCccccCccCCCCCCCCeeEecCCC
Q 042439 562 KLSKLRIHGCERLEALPKGLHNLTSLQELTIGRGV 596 (766)
Q Consensus 562 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 596 (766)
+|+.|+|++|.+...-+..|..+++|+.|+|++|+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 55666666655433333344556666666666653
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.84 E-value=0.096 Score=47.98 Aligned_cols=59 Identities=14% Similarity=0.158 Sum_probs=26.5
Q ss_pred CCcceeeecCC-Cchh----hhHhhcCCCCCCCEEEeeeCCCCCc----ccccccCCCCCCEEEecCC
Q 042439 489 PSLKSLHVLSC-SKLE----SIAERLDNNTSLETIDICYCGNLKN----LPSGLHNLHQLQEISIGRC 547 (766)
Q Consensus 489 ~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~----lp~~l~~l~~L~~L~l~~~ 547 (766)
+.|++|+++++ .... .+...+..-+.|+.|+|++|.+-.. +...+..-+.|++|+|++|
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 34555555543 2211 2334444555566666655542211 1222233345555555555
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=85.98 E-value=0.3 Score=44.63 Aligned_cols=89 Identities=9% Similarity=0.080 Sum_probs=57.3
Q ss_pred CCceeEEEecCCCCccccccCCCCccccccccccCCCCCcceeeecCCCchh----hhHhhcCCCCCCCEEEeeeCCCCC
Q 042439 452 SSLLEKLEIESCRSLTCIFSKNELPATLESLEVGNLPPSLKSLHVLSCSKLE----SIAERLDNNTSLETIDICYCGNLK 527 (766)
Q Consensus 452 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~ 527 (766)
-+.|++|+++++..+.+- ....+...+. .-..|++|++++|...+ .+...+..-+.|+.|+|++|.+..
T Consensus 40 n~~L~~L~L~~nn~igd~-ga~~la~aL~------~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKE-RIRSLIEAAC------NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp CSSCCEEECTTCCSSCHH-HHHHHHHHHT------TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred CCCccEEECCCCCCCCHH-HHHHHHHHHh------hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 557999999876444322 1011111111 12779999999999866 455666678899999999997543
Q ss_pred c----ccccccCCCCCCEEEecCC
Q 042439 528 N----LPSGLHNLHQLQEISIGRC 547 (766)
Q Consensus 528 ~----lp~~l~~l~~L~~L~l~~~ 547 (766)
. +...+..-+.|++|++++|
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCC
Confidence 2 2334555567888888765
Done!