Query 042442
Match_columns 283
No_of_seqs 136 out of 1611
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:13:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02343 chap_CCT_epsi T-comp 100.0 9.7E-59 2.1E-63 453.9 25.6 264 12-281 20-321 (532)
2 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.4E-58 3.1E-63 452.6 24.9 263 13-281 17-317 (526)
3 TIGR02339 thermosome_arch ther 100.0 3.6E-58 7.7E-63 449.2 25.9 266 10-281 7-312 (519)
4 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.5E-57 3.2E-62 445.5 25.6 264 13-281 2-304 (527)
5 TIGR02344 chap_CCT_gamma T-com 100.0 9.1E-58 2E-62 446.9 23.0 265 11-281 8-312 (525)
6 TIGR02347 chap_CCT_zeta T-comp 100.0 2.4E-57 5.2E-62 443.6 25.7 265 11-281 8-318 (531)
7 cd03343 cpn60 cpn60 chaperonin 100.0 2.6E-57 5.6E-62 443.1 25.1 265 11-281 7-309 (517)
8 cd03340 TCP1_eta TCP-1 (CTT or 100.0 9.6E-57 2.1E-61 439.4 25.8 266 10-281 7-311 (522)
9 TIGR02340 chap_CCT_alpha T-com 100.0 1.3E-56 2.9E-61 439.5 26.5 266 11-281 4-308 (536)
10 TIGR02342 chap_CCT_delta T-com 100.0 1.2E-56 2.6E-61 438.1 25.8 263 13-281 3-308 (517)
11 KOG0358 Chaperonin complex com 100.0 1.6E-57 3.5E-62 410.4 17.3 266 10-281 17-324 (534)
12 TIGR02345 chap_CCT_eta T-compl 100.0 1.9E-56 4.2E-61 437.1 26.0 265 10-281 9-312 (522)
13 PTZ00212 T-complex protein 1 s 100.0 1.9E-56 4.1E-61 438.0 25.8 265 10-281 13-318 (533)
14 cd03336 TCP1_beta TCP-1 (CTT o 100.0 3.1E-56 6.7E-61 435.2 27.1 265 11-282 5-307 (517)
15 cd03338 TCP1_delta TCP-1 (CTT 100.0 2.1E-55 4.6E-60 429.4 25.2 263 13-281 2-307 (515)
16 TIGR02341 chap_CCT_beta T-comp 100.0 3.1E-55 6.6E-60 428.1 25.8 264 11-281 6-307 (519)
17 TIGR02346 chap_CCT_theta T-com 100.0 1.6E-54 3.4E-59 424.1 25.8 261 13-281 11-309 (531)
18 KOG0361 Chaperonin complex com 100.0 3E-55 6.4E-60 396.3 17.1 272 4-281 1-315 (543)
19 COG0459 GroL Chaperonin GroEL 100.0 4E-54 8.6E-59 417.4 25.2 265 11-281 3-301 (524)
20 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 7.1E-52 1.5E-56 401.5 21.5 236 11-281 4-275 (484)
21 KOG0360 Chaperonin complex com 100.0 3.6E-52 7.9E-57 384.0 15.8 274 3-281 3-315 (545)
22 KOG0362 Chaperonin complex com 100.0 2.6E-51 5.7E-56 380.3 18.6 263 8-278 14-309 (537)
23 cd03337 TCP1_gamma TCP-1 (CTT 100.0 1.7E-50 3.6E-55 391.6 18.2 224 11-281 8-271 (480)
24 KOG0363 Chaperonin complex com 100.0 2.8E-50 6.1E-55 362.0 13.8 264 10-280 9-310 (527)
25 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 8.4E-49 1.8E-53 379.6 20.7 244 31-281 1-275 (485)
26 PRK12849 groEL chaperonin GroE 100.0 1.3E-47 2.9E-52 375.1 23.1 239 13-281 4-279 (542)
27 cd00309 chaperonin_type_I_II c 100.0 8.9E-48 1.9E-52 371.5 20.6 221 14-281 3-258 (464)
28 PRK00013 groEL chaperonin GroE 100.0 2.3E-47 5E-52 373.5 22.6 238 13-281 4-279 (542)
29 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.1E-47 4.6E-52 369.2 20.7 220 16-281 5-261 (472)
30 PTZ00114 Heat shock protein 60 100.0 3.8E-47 8.3E-52 373.3 22.3 239 13-281 16-291 (555)
31 TIGR02348 GroEL chaperonin Gro 100.0 4.3E-47 9.3E-52 370.8 21.4 240 13-281 3-278 (524)
32 cd03344 GroEL GroEL_like type 100.0 3.3E-46 7.1E-51 364.1 24.5 238 14-281 3-277 (520)
33 PRK12851 groEL chaperonin GroE 100.0 1.7E-46 3.6E-51 367.5 22.4 238 13-280 5-279 (541)
34 PRK12850 groEL chaperonin GroE 100.0 3.8E-46 8.2E-51 365.3 23.0 237 13-279 5-278 (544)
35 KOG0364 Chaperonin complex com 100.0 1.5E-47 3.3E-52 350.6 10.3 271 5-281 2-312 (527)
36 CHL00093 groEL chaperonin GroE 100.0 1.7E-45 3.6E-50 360.0 22.2 241 13-281 4-280 (529)
37 PRK12852 groEL chaperonin GroE 100.0 2.8E-45 6.1E-50 359.5 22.6 240 13-281 5-280 (545)
38 PLN03167 Chaperonin-60 beta su 100.0 1.6E-44 3.5E-49 356.1 23.7 239 13-281 58-334 (600)
39 PRK14104 chaperonin GroEL; Pro 100.0 2.9E-44 6.3E-49 351.9 23.5 241 12-281 4-280 (546)
40 KOG0359 Chaperonin complex com 100.0 3.3E-41 7.1E-46 308.7 7.0 256 19-280 17-308 (520)
41 KOG0357 Chaperonin complex com 100.0 4.6E-30 1E-34 229.3 10.3 173 3-281 7-185 (400)
42 KOG0356 Mitochondrial chaperon 99.9 4.2E-25 9E-30 208.5 13.4 236 11-276 16-282 (550)
43 cd03334 Fab1_TCP TCP-1 like do 99.9 6.4E-22 1.4E-26 177.8 10.9 112 158-281 49-160 (261)
44 cd03333 chaperonin_like chaper 99.4 2.2E-13 4.8E-18 118.4 6.7 78 158-281 45-122 (209)
45 KOG0230 Phosphatidylinositol-4 99.0 8.8E-10 1.9E-14 114.9 7.8 112 158-281 363-474 (1598)
46 PF02579 Nitro_FeMo-Co: Dinitr 77.9 6.4 0.00014 28.8 5.3 36 242-279 45-80 (94)
47 COG1433 Uncharacterized conser 74.4 8.7 0.00019 30.5 5.4 35 242-278 57-91 (121)
48 cd00851 MTH1175 This uncharact 69.6 11 0.00023 28.1 4.8 37 242-280 55-91 (103)
49 cd00562 NifX_NifB This CD repr 68.7 12 0.00025 27.8 4.8 38 242-281 53-90 (102)
50 PF13167 GTP-bdg_N: GTP-bindin 56.0 34 0.00073 26.0 5.2 39 244-282 51-89 (95)
51 PF01297 TroA: Periplasmic sol 51.4 35 0.00075 30.1 5.5 37 241-277 190-226 (256)
52 cd01018 ZntC Metal binding pro 50.1 40 0.00087 30.1 5.7 37 242-278 209-245 (266)
53 cd01017 AdcA Metal binding pro 50.0 38 0.00083 30.5 5.6 38 240-277 210-247 (282)
54 cd00852 NifB NifB belongs to a 46.3 47 0.001 25.1 4.8 28 249-278 64-91 (106)
55 cd00853 NifX NifX belongs to a 44.8 65 0.0014 24.1 5.3 28 249-278 60-87 (102)
56 cd01019 ZnuA Zinc binding prot 42.5 65 0.0014 29.1 5.9 36 242-277 220-255 (286)
57 PRK09545 znuA high-affinity zi 42.1 67 0.0015 29.5 6.0 39 239-277 241-279 (311)
58 cd01137 PsaA Metal binding pro 38.1 60 0.0013 29.4 4.9 37 242-278 218-254 (287)
59 cd01141 TroA_d Periplasmic bin 36.0 54 0.0012 27.0 4.0 34 243-277 62-96 (186)
60 COG4126 Hydantoin racemase [Am 35.6 58 0.0013 28.7 4.1 47 235-282 159-206 (230)
61 PF02548 Pantoate_transf: Keto 35.4 1.1E+02 0.0024 27.6 6.0 45 237-282 95-140 (261)
62 COG0413 PanB Ketopantoate hydr 34.7 80 0.0017 28.5 4.9 47 235-282 92-139 (268)
63 PF13704 Glyco_tranf_2_4: Glyc 34.5 1.6E+02 0.0034 21.4 6.0 48 234-281 2-50 (97)
64 PF04719 TAFII28: hTAFII28-lik 33.6 96 0.0021 23.3 4.5 29 98-126 56-89 (90)
65 TIGR01490 HAD-SF-IB-hyp1 HAD-s 33.6 1.9E+02 0.0041 23.9 7.1 55 220-275 68-127 (202)
66 cd01143 YvrC Periplasmic bindi 30.1 95 0.0021 25.5 4.6 34 243-277 53-86 (195)
67 COG3845 ABC-type uncharacteriz 29.1 1.4E+02 0.0031 29.4 6.0 60 193-279 156-215 (501)
68 TIGR03659 IsdE heme ABC transp 28.6 90 0.002 27.9 4.5 34 243-277 84-117 (289)
69 COG1526 FdhD Uncharacterized p 28.5 1.3E+02 0.0029 27.2 5.4 38 242-280 213-250 (266)
70 cd00636 TroA-like Helical back 28.3 1E+02 0.0022 23.3 4.2 34 243-277 54-87 (148)
71 PF05221 AdoHcyase: S-adenosyl 27.0 1.4E+02 0.003 27.1 5.2 39 242-281 59-100 (268)
72 TIGR03859 PQQ_PqqD coenzyme PQ 26.5 1.9E+02 0.0041 20.9 5.1 46 41-86 13-58 (81)
73 PF13380 CoA_binding_2: CoA bi 26.2 1.9E+02 0.0041 22.3 5.4 36 242-278 71-107 (116)
74 cd01020 TroA_b Metal binding p 25.8 1.6E+02 0.0034 26.2 5.5 40 239-278 195-237 (264)
75 PF02603 Hpr_kinase_N: HPr Ser 25.6 78 0.0017 25.0 3.1 44 236-279 67-111 (127)
76 COG1058 CinA Predicted nucleot 25.4 1.1E+02 0.0024 27.6 4.2 39 239-278 50-92 (255)
77 PF12979 DUF3863: Domain of Un 24.7 2.3E+02 0.005 25.6 6.0 97 19-130 34-145 (351)
78 cd08048 TAF11 TATA Binding Pro 24.6 2.2E+02 0.0048 21.0 5.1 29 98-126 48-83 (85)
79 TIGR00129 fdhD_narQ formate de 24.5 1.8E+02 0.004 25.7 5.5 38 242-280 184-221 (237)
80 PF04471 Mrr_cat: Restriction 24.5 1.1E+02 0.0023 22.7 3.6 29 251-279 80-108 (115)
81 TIGR02663 nifX nitrogen fixati 24.3 1.5E+02 0.0033 22.9 4.5 28 249-278 62-89 (119)
82 PF07905 PucR: Purine cataboli 24.0 2.7E+02 0.0059 21.5 5.9 58 213-278 42-104 (123)
83 PRK00724 formate dehydrogenase 23.1 2E+02 0.0043 25.9 5.5 38 242-280 213-250 (263)
84 PTZ00106 60S ribosomal protein 22.5 2.3E+02 0.005 21.8 5.1 39 242-280 33-74 (108)
85 COG0803 LraI ABC-type metal io 22.5 1.6E+02 0.0034 27.0 4.9 36 240-275 231-266 (303)
86 COG1129 MglA ABC-type sugar tr 22.3 1.1E+02 0.0024 30.3 4.0 47 194-263 162-208 (500)
87 PF09419 PGP_phosphatase: Mito 22.0 2.7E+02 0.0059 23.3 5.8 39 242-280 67-113 (168)
88 KOG1615 Phosphoserine phosphat 20.8 1.6E+02 0.0034 25.7 4.1 37 239-276 93-129 (227)
89 PF02634 FdhD-NarQ: FdhD/NarQ 20.7 1.6E+02 0.0036 25.8 4.5 38 242-280 184-221 (236)
90 cd03213 ABCG_EPDR ABCG transpo 20.5 2E+02 0.0044 24.0 4.9 54 193-269 127-180 (194)
91 cd01016 TroA Metal binding pro 20.0 1.7E+02 0.0038 26.2 4.6 34 239-272 199-232 (276)
No 1
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.7e-59 Score=453.87 Aligned_cols=264 Identities=31% Similarity=0.491 Sum_probs=244.7
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcCC
Q 042442 12 GEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGD 91 (283)
Q Consensus 12 ~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (283)
.+...|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++||
T Consensus 20 ~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~a~~qd~~~GD 99 (532)
T TIGR02343 20 KKRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVELSKSQDDEIGD 99 (532)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHHHHHHHHHhcC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-C------ceE------EE-----ecCCc
Q 042442 92 GTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-K------HVL------EV-----GGDND 152 (283)
Q Consensus 92 Gttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-~------~~L------~i-----s~~~~ 152 (283)
||||+++||++||++|.+|+++|+||+.|++||+.| +.+++.|++ ++++ . +.| .+ +...+
T Consensus 100 GTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~-~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~ 178 (532)
T TIGR02343 100 GTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEE-ISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHR 178 (532)
T ss_pred CcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hccccCcCCCCHHHHHHHHHHhhccchhhHHHH
Confidence 999999999999999999999999999999999999 999999988 4775 1 223 11 11234
Q ss_pred hhhhh-------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccC
Q 042442 153 FFANL-------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLG 213 (283)
Q Consensus 153 ~~s~l-------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~ 213 (283)
.|+++ +|++.|++||+++||++++|++|++++.+++||+.++||||++++|+|++++++.+
T Consensus 179 ~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~~~~ 258 (532)
T TIGR02343 179 RFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTK 258 (532)
T ss_pred HHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEeeccccccccc
Confidence 45444 56778889999999999999999999999999999999999999999999999999
Q ss_pred eeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 214 VQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 214 ~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+++.++++++++.+.+ .|++++++++++|++.|++||+|+++|+|.+++||.+ +||++++|++
T Consensus 259 ~~~~i~~~~~~~~~~~----~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~-~~i~~v~~~~ 321 (532)
T TIGR02343 259 HKLDISSVEEYKKLQK----YEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQ-NDLPAVRWVG 321 (532)
T ss_pred eeEEeCCHHHHHHHHH----HHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHH-CCcEEEEcCC
Confidence 9999999999999999 9999999999999999999999999999999999997 9999999986
No 2
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-58 Score=452.61 Aligned_cols=263 Identities=31% Similarity=0.488 Sum_probs=244.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcCCC
Q 042442 13 EHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDG 92 (283)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (283)
+..+|.+++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++|||
T Consensus 17 ~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~GDG 96 (526)
T cd03339 17 KRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSKSQDDEIGDG 96 (526)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHHhhhhhhcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-C------ceE-----------EEecCCch
Q 042442 93 TTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-K------HVL-----------EVGGDNDF 153 (283)
Q Consensus 93 ttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-~------~~L-----------~is~~~~~ 153 (283)
|||+++||++||++|.+|+++|+||+.|++||++| +.+++.|++ ++++ . +.| +.+...++
T Consensus 97 Ttt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~-~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ 175 (526)
T cd03339 97 TTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEE-IADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQ 175 (526)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-hccccCCCcccHHHHHHHHHHhhcccchhhHHHH
Confidence 99999999999999999999999999999999999 999999988 4776 1 112 11112344
Q ss_pred hhhh-------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccCe
Q 042442 154 FANL-------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGV 214 (283)
Q Consensus 154 ~s~l-------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~~ 214 (283)
|+++ .|++.|++||+++||++++|++|++++.+++|++.++||||++++|+|++++++.++
T Consensus 176 ~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~~~~~ 255 (526)
T cd03339 176 FAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKTKH 255 (526)
T ss_pred HHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEecccCCccccce
Confidence 5544 567788999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 215 QVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 215 ~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
++.++++++++++.+ .|+++++++++++++.|+++|+++++|+|.|++||.+ +||++++|++
T Consensus 256 ~~~i~s~~~~~~~~~----~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~-~~I~av~~v~ 317 (526)
T cd03339 256 KLDITSVEDYKKLQE----YEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQ-NGLPAVRWVG 317 (526)
T ss_pred EEEeCCHHHHHHHHH----HHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHH-CCCEEEEeCC
Confidence 999999999999999 9999999999999999999999999999999999997 9999999986
No 3
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=3.6e-58 Score=449.24 Aligned_cols=266 Identities=42% Similarity=0.622 Sum_probs=246.2
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHc
Q 042442 10 TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREV 89 (283)
Q Consensus 10 ~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~ 89 (283)
.+.+..+|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++
T Consensus 7 ~~~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~qd~~~ 86 (519)
T TIGR02339 7 EGTQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDAEV 86 (519)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE------EE------ecCC
Q 042442 90 GDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL------EV------GGDN 151 (283)
Q Consensus 90 GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L------~i------s~~~ 151 (283)
||||||+++|+++||+++.+|+++|+||+.|++||++| +.+++.|++ ++++ ++.| .+ +.+.
T Consensus 87 GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~-~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~ 165 (519)
T TIGR02339 87 GDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDE-IATKISPEDRDLLKKVAETSLTGKASAEVTK 165 (519)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hccccCcccHHHHHHHHHhhhccccccchhH
Confidence 99999999999999999999999999999999999999 999999988 4776 1223 12 2234
Q ss_pred chhhhh----------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccc
Q 042442 152 DFFANL----------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTK 209 (283)
Q Consensus 152 ~~~s~l----------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k 209 (283)
++|+++ +|+++++.||+++||++++|++|++++.++.|+++++||||++++|+|++++
T Consensus 166 ~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~ 245 (519)
T TIGR02339 166 DKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEK 245 (519)
T ss_pred HHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEeccccccc
Confidence 667776 1336678899999999999999999999999999999999999999999999
Q ss_pred cccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 210 IQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 210 ~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
++.++++.+++++++.++.+ +|+++++++|++|++.|++||+++++|+|.|++||.+ +||++++|+.
T Consensus 246 ~~~~~~~~i~~~~~~~~~l~----~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~-~gI~~v~~v~ 312 (519)
T TIGR02339 246 TEIDAKIRITDPDQIKKFLD----QEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAK-AGILAVRRVK 312 (519)
T ss_pred cccceEEEECCHHHHHHHHH----HHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHH-CCCEEEecCC
Confidence 99999999999999999998 9999999999999999999999999999999999986 9999999985
No 4
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.5e-57 Score=445.49 Aligned_cols=264 Identities=68% Similarity=0.955 Sum_probs=242.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcCCC
Q 042442 13 EHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDG 92 (283)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (283)
+..+|.+++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDG 81 (527)
T cd03335 2 ERTSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDG 81 (527)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCC
Confidence 36788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE-----------EEecCCchhh
Q 042442 93 TTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL-----------EVGGDNDFFA 155 (283)
Q Consensus 93 ttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L-----------~is~~~~~~s 155 (283)
|||+++||++||++|.+|+++|+||+.|++||++| +.+++.|++.++++ ++.| .++.+.++|+
T Consensus 82 TTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls 161 (527)
T cd03335 82 TTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFA 161 (527)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHH
Confidence 99999999999999999999999999999999999 99999998523655 1122 1222335666
Q ss_pred hh----------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccC
Q 042442 156 NL----------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLG 213 (283)
Q Consensus 156 ~l----------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~ 213 (283)
++ +|++++..|+++++|++++|++|++++.++.||++++||||++++|||++++++.+
T Consensus 162 ~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~ 241 (527)
T cd03335 162 NMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKLG 241 (527)
T ss_pred HHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCccccc
Confidence 65 23444778989999999999999999999999999999999999999999999999
Q ss_pred eeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 214 VQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 214 ~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+++.++++++++.+.+ .|++++++++++|++.|++||+++++|+|.|++||.+ +||++++|+.
T Consensus 242 ~~~~~~~~~~le~~~~----~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~-~~I~~v~~v~ 304 (527)
T cd03335 242 VQVVVTDPEKLEKIRQ----RESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVE-AGAMAVRRVK 304 (527)
T ss_pred eeEEeCCHHHHHHHHH----HHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHH-CCcEEEEeCC
Confidence 9999999999999988 9999999999999999999999999999999999997 9999999986
No 5
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.1e-58 Score=446.92 Aligned_cols=265 Identities=32% Similarity=0.485 Sum_probs=244.3
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcC
Q 042442 11 RGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVG 90 (283)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (283)
+.+..+|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|++++|
T Consensus 8 ~~~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~~~~G 87 (525)
T TIGR02344 8 NTKRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQDEEVG 87 (525)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhhhhcc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE------EEec-----CCch
Q 042442 91 DGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL------EVGG-----DNDF 153 (283)
Q Consensus 91 DGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L------~is~-----~~~~ 153 (283)
|||||+++|+++||++|.+|+++|+||+.|++||+.| +.++++|++ ++++ ++.| .+++ +.+.
T Consensus 88 DGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ 166 (525)
T TIGR02344 88 DGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEE-ISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDL 166 (525)
T ss_pred CCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-hccccCCCCHHHHHHHHHHhhccccchhHHHH
Confidence 9999999999999999999999999999999999999 999999988 4776 1112 1121 2344
Q ss_pred hhhh-----------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEeccccccccc
Q 042442 154 FANL-----------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKI 210 (283)
Q Consensus 154 ~s~l-----------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~ 210 (283)
|+++ +|++.+++||+++||++++|++|++++.++.|+++++||||++++|||+++++
T Consensus 167 ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~~~~ 246 (525)
T TIGR02344 167 MCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKKG 246 (525)
T ss_pred HHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEecccccccc
Confidence 4444 14677788999999999999999999999999999999999999999999999
Q ss_pred ccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 211 QLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 211 ~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+.++++.++++++++++.+ +|++++++++++|.+.|++||+|+++|+|.+++||.+ +||++++|+.
T Consensus 247 ~~~~~i~i~~~~~~~~~l~----~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~-~~I~av~~v~ 312 (525)
T TIGR02344 247 ESQTNVEIMKEEDWNRILQ----MEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLK-ANISAIRRVR 312 (525)
T ss_pred cccceEEeCCHHHHHHHHH----HHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhH-CCceEEecCC
Confidence 9999999999999999999 9999999999999999999999999999999999998 9999999986
No 6
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.4e-57 Score=443.57 Aligned_cols=265 Identities=27% Similarity=0.422 Sum_probs=243.9
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcC
Q 042442 11 RGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVG 90 (283)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (283)
+.+...|.+++..|+.||.+++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++|
T Consensus 8 ~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~qd~~~G 87 (531)
T TIGR02347 8 KAESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQDDITG 87 (531)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHhhhhhc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc------CceE-----------EEecCCc
Q 042442 91 DGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD------KHVL-----------EVGGDND 152 (283)
Q Consensus 91 DGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~------~~~L-----------~is~~~~ 152 (283)
|||||+++||++||++|.+|+++|+||..|++||+.| +.+++.|++ ++++ ++.| .++.+++
T Consensus 88 DGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~-~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~ 166 (531)
T TIGR02347 88 DGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDK-FKIKTEDEVDRELLLNVARTSLRTKLPIDLAD 166 (531)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hhccCCCCCCHHHHHHHHHHHhccccchhhHH
Confidence 9999999999999999999999999999999999999 999999988 4743 1222 1223456
Q ss_pred hhhhh------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccCe
Q 042442 153 FFANL------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGV 214 (283)
Q Consensus 153 ~~s~l------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~~ 214 (283)
+|+++ .|++++..|++.+||++++|++|++++.+++||++++||||++++|||++++++.++
T Consensus 167 ~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~~~~~~ 246 (531)
T TIGR02347 167 QLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEVNS 246 (531)
T ss_pred HHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCCCccccCc
Confidence 77776 245556889999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------Cc---EEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 215 QVLVTNPRELEKICQRFLHREADMVKERIEKLLKAG-------AN---VVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 215 ~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~g-------v~---vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
++.+++++++..+.+ .|++++++++++|++.| ++ ||+|+++|+|.+++||.+ +||++++|+.
T Consensus 247 ~~~~~~~~~~~~~~~----~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~-~~I~~i~rv~ 318 (531)
T TIGR02347 247 GFFYSNAEQREKLVE----AERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAK-EGIMALRRAK 318 (531)
T ss_pred eEEEcCHHHHHHHHH----HHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHH-CCceEEccCC
Confidence 999999999999999 99999999999999977 26 999999999999999997 9999999975
No 7
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.6e-57 Score=443.14 Aligned_cols=265 Identities=41% Similarity=0.625 Sum_probs=246.1
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcC
Q 042442 11 RGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVG 90 (283)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (283)
+.+..+|.+++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++|
T Consensus 7 ~~~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~G 86 (517)
T cd03343 7 GTQRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQDEEVG 86 (517)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHHHHHhC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE-----------EEecCCch
Q 042442 91 DGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL-----------EVGGDNDF 153 (283)
Q Consensus 91 DGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L-----------~is~~~~~ 153 (283)
|||||+++|+++||+++.+++++|+||..|++||++| +.+++.|++ ++++ ++.| ..+...++
T Consensus 87 DGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~ 165 (517)
T cd03343 87 DGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDE-IAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDK 165 (517)
T ss_pred CChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH-hhcccCCCCHHHHHHHHHHhhcccchhhHHHH
Confidence 9999999999999999999999999999999999999 999999988 4765 1222 11112355
Q ss_pred hhhh---------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEeccccccccccc
Q 042442 154 FANL---------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQL 212 (283)
Q Consensus 154 ~s~l---------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~ 212 (283)
|+++ +|++.++.|++++||++++|++|++++.+++|+++++||||++++++||+++++.
T Consensus 166 l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~~k~~~ 245 (517)
T cd03343 166 LADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEI 245 (517)
T ss_pred HHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEeccccCCcccc
Confidence 6665 2778888999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 213 GVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 213 ~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
++++.++++++++++.+ +|++++++++++|++.|++||+++++|+|.|++||.+ +||++++|+.
T Consensus 246 ~~~~~i~s~~~~~~~~~----~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~-~gI~~v~~v~ 309 (517)
T cd03343 246 DAKIRITSPDQLQAFLE----QEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAK-AGILAVRRVK 309 (517)
T ss_pred ceeEEeCCHHHHHHHHH----HHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhH-CCcEEEEeCC
Confidence 99999999999999999 9999999999999999999999999999999999997 9999999985
No 8
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.6e-57 Score=439.43 Aligned_cols=266 Identities=36% Similarity=0.542 Sum_probs=246.4
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHc
Q 042442 10 TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREV 89 (283)
Q Consensus 10 ~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~ 89 (283)
.+.+.++|.++...|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++
T Consensus 7 ~~~~~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q~~~~ 86 (522)
T cd03340 7 EGTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQDAEV 86 (522)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHhHhHh
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc--C------ce-E-----------EEe
Q 042442 90 GDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD--K------HV-L-----------EVG 148 (283)
Q Consensus 90 GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~--~------~~-L-----------~is 148 (283)
||||||+++|+++||+++.+++++|+||+.|++||++| +.+++.|++ ++++ . +. | +.+
T Consensus 87 GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~-~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~ 165 (522)
T cd03340 87 GDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKE-IAVNIDKEDKEEQRELLEKCAATALNSKLIA 165 (522)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-hhcccCcccccccHHHHHHHHHHHhccCcch
Confidence 99999999999999999999999999999999999999 999999988 4776 1 11 2 122
Q ss_pred cCCchhhhh---------------hhhhhhccCCCeeeEEEEeceEeccccCCCC---CcceecCCEEEEeccccccccc
Q 042442 149 GDNDFFANL---------------GINILKAHVKSAIDSYLLNGYALNTGRAAQG---MPLRVAPPRIACLDFNLQKTKI 210 (283)
Q Consensus 149 ~~~~~~s~l---------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~---m~~~~~~~kIli~~~~le~~k~ 210 (283)
.+.++|+++ .|+++++.|++++||++++|++|++++.+++ ||++++||||+++++||+++++
T Consensus 166 ~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~ 245 (522)
T cd03340 166 SEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELELKAE 245 (522)
T ss_pred hHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCCCcc
Confidence 345677777 4667888999999999999999999999776 5899999999999999999999
Q ss_pred ccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 211 QLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 211 ~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+.+.++.++++++++++.+ .|+++++++++++++.|++||+|+++|+|.+++||.+ +||++++||.
T Consensus 246 ~~~~~i~i~~~~~~~~~~~----~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~-~~I~~~~~v~ 311 (522)
T cd03340 246 KDNAEVRVEDPEEYQAIVD----AEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFAD-RDIFCAGRVP 311 (522)
T ss_pred ccceEEEECCHHHHHHHHH----HHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHH-CCcEEEEeCC
Confidence 9999999999999999998 9999999999999999999999999999999999997 9999999985
No 9
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-56 Score=439.46 Aligned_cols=266 Identities=64% Similarity=0.911 Sum_probs=243.5
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcC
Q 042442 11 RGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVG 90 (283)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (283)
..++..|.+++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++|
T Consensus 4 ~~~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~G 83 (536)
T TIGR02340 4 GGERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVG 83 (536)
T ss_pred CcceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhC
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-C----ceE-----------EEecCCch
Q 042442 91 DGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-K----HVL-----------EVGGDNDF 153 (283)
Q Consensus 91 DGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-~----~~L-----------~is~~~~~ 153 (283)
|||||+++|+++||++|.+|+++|+||+.|++||+.| +.+++.|++..+++ . +.| .++.++++
T Consensus 84 DGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ 163 (536)
T TIGR02340 84 DGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDF 163 (536)
T ss_pred CChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHH
Confidence 9999999999999999999999999999999999999 99999998632555 1 112 22234456
Q ss_pred hhhh----------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccc
Q 042442 154 FANL----------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQ 211 (283)
Q Consensus 154 ~s~l----------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~ 211 (283)
|+++ +|+++++.|+++++|++++|++|++++.++.|+++++||||++++|||++++++
T Consensus 164 ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~~~ 243 (536)
T TIGR02340 164 FSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQKMA 243 (536)
T ss_pred HHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCccc
Confidence 6665 344556788899999999999999999999999999999999999999999999
Q ss_pred cCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 212 LGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 212 ~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
.++++.++++.+++.+.+ .|++++++++++|++.|++||+++++|+|.+++||.+ +||++++|+.
T Consensus 244 ~~~~~~~~~~~~le~~~~----~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k-~~I~~i~rv~ 308 (536)
T TIGR02340 244 LGVQIVVDDPAKLEGIRQ----READITKERIKKILKAGANVVLTTGGIDDMCLKYFVE-AGAMGVRRCK 308 (536)
T ss_pred CceeEEeCCHHHHHHHHH----HHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHH-CCcEEEecCC
Confidence 999999999999999999 9999999999999999999999999999999999998 9999999975
No 10
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.2e-56 Score=438.08 Aligned_cols=263 Identities=34% Similarity=0.522 Sum_probs=241.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcCCC
Q 042442 13 EHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDG 92 (283)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (283)
+...+.+++..|++||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|++++|||
T Consensus 3 ~~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 82 (517)
T TIGR02342 3 DKDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDG 82 (517)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCC
Confidence 44677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE-----------EEecCCchhh
Q 042442 93 TTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL-----------EVGGDNDFFA 155 (283)
Q Consensus 93 ttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L-----------~is~~~~~~s 155 (283)
|||+++|+++||++|.+|+++|+||+.|++||++| +.+++.|++ +++| .+.| .++.+.++|+
T Consensus 83 Ttt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~-~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls 161 (517)
T TIGR02342 83 TTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDE-MSIPVDLSDREILIKSATTSLSSKVVSQYSSLLA 161 (517)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-hccccCccCHHHHHHHHHHHhccccchhHHHHHH
Confidence 99999999999999999999999999999999999 999999988 4776 1122 2223345556
Q ss_pred hh--------------------hhhhhhccCCCeeeEEEEeceEeccccCC-CCCcceecCCEEEEecccccccccccCe
Q 042442 156 NL--------------------GINILKAHVKSAIDSYLLNGYALNTGRAA-QGMPLRVAPPRIACLDFNLQKTKIQLGV 214 (283)
Q Consensus 156 ~l--------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~-~~m~~~~~~~kIli~~~~le~~k~~~~~ 214 (283)
++ +|++++..||+.++|++++|++|++++.+ ++||+.++||||++++|+|++++++.+.
T Consensus 162 ~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~ 241 (517)
T TIGR02342 162 PLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMEN 241 (517)
T ss_pred HHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccc
Confidence 55 34556778999999999999999999998 4899999999999999999999999999
Q ss_pred eEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCC-----CHHHHHHHHhcCCceEEEeec
Q 042442 215 QVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGI-----DDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 215 ~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I-----~d~al~~l~~~~~i~~~~~~~ 281 (283)
++.++++++++.+.+ +|+++++.+++++++.|++||+|+++| +|.+++||.+ +||.+++|+.
T Consensus 242 ~~~~~~~~~~~~~~~----~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~-~~I~av~~v~ 308 (517)
T TIGR02342 242 QVIVNDYAQMDRVLK----EERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAK-MKIMVVKDIE 308 (517)
T ss_pred eEEeCCHHHHHHHHH----HHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhh-CCceEEecCC
Confidence 999999999999998 999999999999999999999999999 9999999998 9999999985
No 11
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-57 Score=410.35 Aligned_cols=266 Identities=33% Similarity=0.491 Sum_probs=247.6
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHc
Q 042442 10 TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREV 89 (283)
Q Consensus 10 ~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~ 89 (283)
...+....+++|.+||.|++++++.+||||||+||||||++..|+++|||||+|||+.|++-||+++|+++++..||.++
T Consensus 17 ~f~d~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~ea 96 (534)
T KOG0358|consen 17 AFKDKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEA 96 (534)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccc
Confidence 34456677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE-----------EEecCCc
Q 042442 90 GDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL-----------EVGGDND 152 (283)
Q Consensus 90 GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L-----------~is~~~~ 152 (283)
||||||+|+||++||+.+.+|+++|+||+.|++.|+.| ++++++|.+ |+.| ++.| ++|+++.
T Consensus 97 GDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~-m~~~velsdre~Li~~atTsLnSKvvSq~s~ 175 (534)
T KOG0358|consen 97 GDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDE-MSVPVELSDRESLIKSATTSLNSKVVSQYSS 175 (534)
T ss_pred cCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHh-cCCCcccCcHHHHHHHHHhHhhHHHHHhhcc
Confidence 99999999999999999999999999999999999999 999999998 5877 4434 4566665
Q ss_pred hhhhh--------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEeccccccccccc
Q 042442 153 FFANL--------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQL 212 (283)
Q Consensus 153 ~~s~l--------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~ 212 (283)
.++.+ +|+++|+.||.++|+++++|++|++......-|++++++||.+++|.|++||++.
T Consensus 176 llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdm 255 (534)
T KOG0358|consen 176 LLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDM 255 (534)
T ss_pred ccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCc
Confidence 55555 7899999999999999999999999887767899999999999999999999999
Q ss_pred CeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCC-----CHHHHHHHHhcCCceEEEeec
Q 042442 213 GVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGI-----DDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 213 ~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I-----~d~al~~l~~~~~i~~~~~~~ 281 (283)
..++.++++.+|+.+.+ +|++|+.++|++|++.|+||++.|++| +|+|+|||+| .+|+++..+.
T Consensus 256 en~iiv~DyaqMdrilk----eER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~k-lkimvikdie 324 (534)
T KOG0358|consen 256 ENQIIVNDYAQMDRILK----EERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVIKDIE 324 (534)
T ss_pred ccceEecCHHHHHHHHH----HHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHh-CcEEEEcccc
Confidence 99999999999999999 999999999999999999999999976 8999999998 9999998775
No 12
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.9e-56 Score=437.09 Aligned_cols=265 Identities=34% Similarity=0.513 Sum_probs=245.3
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHc
Q 042442 10 TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREV 89 (283)
Q Consensus 10 ~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~ 89 (283)
.+.+..+|.+++..|++||.++++++++||||+||+|||+++.| ++|||||+|||++|+++||+++|++++|++|++++
T Consensus 9 ~~~~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~q~~~~ 87 (522)
T TIGR02345 9 EGTDTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKSQDSEV 87 (522)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-C-------ceE-----------EEec
Q 042442 90 GDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-K-------HVL-----------EVGG 149 (283)
Q Consensus 90 GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-~-------~~L-----------~is~ 149 (283)
||||||+++|+++||++|.+|+++|+||+.|++||++| +.+++.|++ +++| . +.| +++.
T Consensus 88 GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~-~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~ 166 (522)
T TIGR02345 88 GDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKE-IAVTIDEVKGEQREVLEKCAATALNSKLIAH 166 (522)
T ss_pred CCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-hccCcCCcccccHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999 999999988 4776 2 123 2233
Q ss_pred CCchhhhh----------------hhhhhhccCCCeeeEEEEeceEeccccCCCCC---cceecCCEEEEeccccccccc
Q 042442 150 DNDFFANL----------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGM---PLRVAPPRIACLDFNLQKTKI 210 (283)
Q Consensus 150 ~~~~~s~l----------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m---~~~~~~~kIli~~~~le~~k~ 210 (283)
++++|+++ .|+++++.|++++||++++|++|++++.+++| |++++||||+++++||++.++
T Consensus 167 ~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~ 246 (522)
T TIGR02345 167 EKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELELKAE 246 (522)
T ss_pred hHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecCcccCcc
Confidence 45677777 34677788999999999999999999998765 899999999999999999999
Q ss_pred ccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 211 QLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 211 ~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+.+..+.++++++++++.+ .|++.++++++++++.|++||+|+++|+|.+++||.+ +||++++|+.
T Consensus 247 ~~~~~i~~~~~~~~~~~~~----~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~-~~I~~~~~v~ 312 (522)
T TIGR02345 247 KDNAEIRVEDVEDYQAIVD----AEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFAD-HNIFCAGRVS 312 (522)
T ss_pred ccceEEEECCHHHHHHHHH----HHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHH-CCcEEEecCC
Confidence 9999999999999999998 9999999999999999999999999999999999997 9999999985
No 13
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=1.9e-56 Score=437.96 Aligned_cols=265 Identities=35% Similarity=0.530 Sum_probs=244.4
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecC-----CCCeEEccCHHHHHhhcccccchhHHHHHHHHH
Q 042442 10 TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDD-----IGDVKITNDGATILKMLEIEHPAAKVLVELAEL 84 (283)
Q Consensus 10 ~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~-----~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~ 84 (283)
.+.+..+|.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+|||++|+++||+++|++++|++
T Consensus 13 ~~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~akll~~~a~~ 92 (533)
T PTZ00212 13 QGAQEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKILVDISKT 92 (533)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHh
Confidence 456688999999999999999999999999999999999998 599999999999999999999999999999999
Q ss_pred hhhHcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc--C------ceE------EEe-
Q 042442 85 QDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD--K------HVL------EVG- 148 (283)
Q Consensus 85 ~~~~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~--~------~~L------~is- 148 (283)
|++++||||||+++||++||++|.+|+++|+||+.|++||++| +.++++|++ ++++ . +.| .++
T Consensus 93 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~-~s~~~~~~~~~~~~~l~~va~t~l~s 171 (533)
T PTZ00212 93 QDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEE-IAFDHGSDEEKFKEDLLNIARTTLSS 171 (533)
T ss_pred hhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-hCcCCCccchhhHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999 999999988 4876 1 122 122
Q ss_pred ----cCCchhhhh---------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccc
Q 042442 149 ----GDNDFFANL---------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTK 209 (283)
Q Consensus 149 ----~~~~~~s~l---------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k 209 (283)
...+.|+++ .|++.+++||+++||++++|+++++++.+ .|+++++||||++++||||+++
T Consensus 172 k~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~~~~i~n~kIll~~~~Le~~k 250 (533)
T PTZ00212 172 KLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQPKRLENCKILVANTPMDTDK 250 (533)
T ss_pred cccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEEecccCC-CCCccccCCcEEEEeCCCCCCc
Confidence 234667777 45788899999999999999999998766 5899999999999999999999
Q ss_pred ccc-CeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 210 IQL-GVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 210 ~~~-~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
++. ++++.+++++++..+.+ .|++++++++++|++.|+++++++++|+|.+++||.+ +||++++|+.
T Consensus 251 ~~~~~~~~~i~~~~~~~~l~~----~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~-~~I~avr~v~ 318 (533)
T PTZ00212 251 IKIYGAKVKVDSMEKVAEIEA----AEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAE-AGIMAIEHAD 318 (533)
T ss_pred ccccCceEEeCCHHHHHHHHH----HHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHH-CCCEEEecCC
Confidence 997 88999999999998998 9999999999999999999999999999999999997 9999999985
No 14
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.1e-56 Score=435.19 Aligned_cols=265 Identities=35% Similarity=0.553 Sum_probs=244.1
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecC--CCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhH
Q 042442 11 RGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDD--IGDVKITNDGATILKMLEIEHPAAKVLVELAELQDRE 88 (283)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~--~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~ 88 (283)
..+..+|.+++..|+.||..++++++|||||+||+|||+++ .|+++|||||+||+++|+++||+++|++++|++|+++
T Consensus 5 ~~~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~qd~~ 84 (517)
T cd03336 5 GAQEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKVQDDE 84 (517)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHHHhH
Confidence 34678889999999999999999999999999999999998 4999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhccccC--------ceE------EEe-----
Q 042442 89 VGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQDK--------HVL------EVG----- 148 (283)
Q Consensus 89 ~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~~--------~~L------~is----- 148 (283)
+||||||+++||++||++|.+|+++|+||..|++||++| +.+++.|++ ++++. +.| .++
T Consensus 85 ~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~~~~~~~~~~~~~~~l~~ia~t~lssk~~~ 163 (517)
T cd03336 85 VGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLS-SAVDHSSDEEAFREDLLNIARTTLSSKILT 163 (517)
T ss_pred hCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-hccCcccccchhHHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999999999999 999999988 47761 122 133
Q ss_pred cCCchhhhh---------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEeccccccccccc-
Q 042442 149 GDNDFFANL---------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQL- 212 (283)
Q Consensus 149 ~~~~~~s~l---------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~- 212 (283)
.+.++|+++ .|++.++.|++++||++++|+++++.+.+ .||++++||||+++++||++++++.
T Consensus 164 ~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~~~~~~n~kIli~~~~le~~~~~~~ 242 (517)
T cd03336 164 QDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKIKIF 242 (517)
T ss_pred hhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccceEEEeeEEEecccCC-CCCCeeccccEEEEecCCCccccccc
Confidence 246778887 45778889999999999999999998765 4799999999999999999999997
Q ss_pred CeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeecc
Q 042442 213 GVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLCL 282 (283)
Q Consensus 213 ~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~~ 282 (283)
++++.+++++++..+.+ .|++++++++++|++.|+++++++++|+|.+++||.+ +||++++|++.
T Consensus 243 ~~~~~~~~~~~~~~l~~----~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~-~~I~av~~v~~ 307 (517)
T cd03336 243 GAKVRVDSTAKVAEIEE----AEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFAD-AGIMAIEHADF 307 (517)
T ss_pred CceEEeCCHHHHHHHHH----HHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHH-CCcEEEecCCH
Confidence 89999999999999888 9999999999999999999999999999999999997 99999999863
No 15
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-55 Score=429.38 Aligned_cols=263 Identities=32% Similarity=0.496 Sum_probs=241.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcCCC
Q 042442 13 EHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDG 92 (283)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDG 92 (283)
++..+.+++..|++||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|++++|||
T Consensus 2 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDG 81 (515)
T cd03338 2 DKEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDG 81 (515)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCC
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE-----------EEecCCchhh
Q 042442 93 TTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL-----------EVGGDNDFFA 155 (283)
Q Consensus 93 ttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L-----------~is~~~~~~s 155 (283)
|||+++|+++||+++.+++++|+||..|++||++| +.+++.|++ ++.+ ++.| .++.++++|+
T Consensus 82 Ttt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls 160 (515)
T cd03338 82 TTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDS-MSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLA 160 (515)
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-hccCCCCCCHHHHHHHHHHHhccccchhhHHHHH
Confidence 99999999999999999999999999999999999 999999988 4776 1223 1222456677
Q ss_pred hh--------------------hhhhhhccCCCeeeEEEEeceEeccccCCCC-CcceecCCEEEEecccccccccccCe
Q 042442 156 NL--------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQG-MPLRVAPPRIACLDFNLQKTKIQLGV 214 (283)
Q Consensus 156 ~l--------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~-m~~~~~~~kIli~~~~le~~k~~~~~ 214 (283)
++ .|++.+..|++++||++++|++|++++.+++ ||+.++|||+++++|||++++++.+.
T Consensus 161 ~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~ 240 (515)
T cd03338 161 PIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDN 240 (515)
T ss_pred HHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccccCc
Confidence 76 2346777899999999999999999999986 49999999999999999999999999
Q ss_pred eEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCC-----CHHHHHHHHhcCCceEEEeec
Q 042442 215 QVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGI-----DDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 215 ~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I-----~d~al~~l~~~~~i~~~~~~~ 281 (283)
++.++++++++.+.+ +|+++++.++++|++.|++||+|+++| ++.+++||.+ +||.+++|+.
T Consensus 241 ~~~i~~~~~~~~~~~----~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~-~~I~av~~~~ 307 (515)
T cd03338 241 NIVVNDYAQMDRILR----EERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVVKDIE 307 (515)
T ss_pred eEEeCCHHHHHHHHH----HHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHH-CCceEEecCC
Confidence 999999999999999 999999999999999999999999998 8999999997 9999999986
No 16
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.1e-55 Score=428.05 Aligned_cols=264 Identities=34% Similarity=0.521 Sum_probs=241.3
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCC--CCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhH
Q 042442 11 RGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDI--GDVKITNDGATILKMLEIEHPAAKVLVELAELQDRE 88 (283)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~--g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~ 88 (283)
+.+..+|++++..|+.||..++++++|||||+||+|||+++. |+++|||||+|||++|+++||+++|++++|++|+++
T Consensus 6 ~~~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~qd~~ 85 (519)
T TIGR02341 6 NAQEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKVQDDE 85 (519)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHHhHhh
Confidence 456788899999999999999999999999999999999985 999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-C-------ceE------EE-----e
Q 042442 89 VGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-K-------HVL------EV-----G 148 (283)
Q Consensus 89 ~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-~-------~~L------~i-----s 148 (283)
+||||||+++|+++||++|.+|+++|+||+.|++||+.| +.+++.|++ ++++ . +.| .+ +
T Consensus 86 ~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~-~~~~~~~~~~~~~~~L~~ia~t~l~ski~~ 164 (519)
T TIGR02341 86 VGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKK-SSIDNGSDKTKFRDDLLNIARTTLSSKILS 164 (519)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-hcccccCcccccHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999999999999 999999988 4776 1 122 11 1
Q ss_pred cCCchhhhh---------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEeccccccccccc-
Q 042442 149 GDNDFFANL---------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQL- 212 (283)
Q Consensus 149 ~~~~~~s~l---------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~- 212 (283)
...+.|+++ .+++.++.|+++++|++++|+++++.+.+ .||++++||||+++++||++++++.
T Consensus 165 ~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~Ili~~~~Le~~~~~~~ 243 (519)
T TIGR02341 165 QHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQPKRIENAKILIANTPMDTDKVKVF 243 (519)
T ss_pred hHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccceEEeeEEEeccCCC-CCceeeccccEEEEecCCCCCccccC
Confidence 223456655 45677788999999999999999999765 5899999999999999999999997
Q ss_pred CeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 213 GVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 213 ~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
++++.+++++++..+.+ .|+++++++++.|++.|+++++|+++|+|.+++||.+ ++|++++|++
T Consensus 244 ~~~~~~~~~~~~~~l~~----~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~-~~I~~v~~~~ 307 (519)
T TIGR02341 244 GSRVRVDSTAKVAELEA----AEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFAD-AGVMAIEHAD 307 (519)
T ss_pred CceEEeCCHHHHHHHHH----HHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHH-CCcEEEecCC
Confidence 88999999999999999 9999999999999999999999999999999999997 9999999986
No 17
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.6e-54 Score=424.07 Aligned_cols=261 Identities=32% Similarity=0.530 Sum_probs=237.5
Q ss_pred cccccH-HHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcCC
Q 042442 13 EHQSGQ-DVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGD 91 (283)
Q Consensus 13 ~~~~g~-~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (283)
+...|. +++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|++++|++|++++||
T Consensus 11 ~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a~sqd~~~GD 90 (531)
T TIGR02346 11 RHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMASEMQENEIGD 90 (531)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHHHHHhhhhCC
Confidence 466665 4899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhccc-c------CceE------EEe----cCCch
Q 042442 92 GTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQ-D------KHVL------EVG----GDNDF 153 (283)
Q Consensus 92 Gttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~-~------~~~L------~is----~~~~~ 153 (283)
||||++||+++||+++.+++++|+||..|++||+.| +.+++.|++ ++. + .+.| .++ +++++
T Consensus 91 GTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~-~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ 169 (531)
T TIGR02346 91 GTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEE-LVVWEVEDVRNKKELIKALKASISSKQYGNEDF 169 (531)
T ss_pred ChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-hccccCCCCCCHHHHHHHHHHHhccccCchHHH
Confidence 999999999999999999999999999999999999 999999988 475 3 1122 121 12566
Q ss_pred hhhh-------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccCe
Q 042442 154 FANL-------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGV 214 (283)
Q Consensus 154 ~s~l-------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~~ 214 (283)
|+++ .|+++++.|+++++|++++|++|++++. +||+.++||||+++++|+++++++.++
T Consensus 170 ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~~k~i~n~kI~l~~~~l~~~~~~~~~ 247 (531)
T TIGR02346 170 LAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAE--GSVKRVKNAKVAVFSCPLDTATTETKG 247 (531)
T ss_pred HHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCC--CCceeccCCCEEEEecCcCCCcccCce
Confidence 7766 3455666899999999999999999843 579999999999999999999999999
Q ss_pred eEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 215 QVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 215 ~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
++.+++++++..+.+ .|+++++++++++++.|++||+|+++|+|.+++||.+ +||.+++|++
T Consensus 248 ~~~~~~~~~l~~~~~----~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~-~~I~av~~~~ 309 (531)
T TIGR02346 248 TVLIHNAEELLNYSK----GEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEK-YNIMVLKIPS 309 (531)
T ss_pred EEEECCHHHHHHHHH----HHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHH-CCcEEEecCC
Confidence 999999999999988 9999999999999999999999999999999999996 9999999986
No 18
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-55 Score=396.32 Aligned_cols=272 Identities=35% Similarity=0.510 Sum_probs=250.0
Q ss_pred cCCCCC----CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHH
Q 042442 4 LSQTPD----TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLV 79 (283)
Q Consensus 4 ~~~~~~----~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~ 79 (283)
+++|+. ++++...|.-..-+|++||..+++.++|||||+||||+|++..|+++|||||+||||-|++-||+++.++
T Consensus 1 ~m~~~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlV 80 (543)
T KOG0361|consen 1 MMQPPIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLV 80 (543)
T ss_pred CCCCCEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHH
Confidence 355554 6777788887788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---------CceE----
Q 042442 80 ELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---------KHVL---- 145 (283)
Q Consensus 80 ~~~~~~~~~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---------~~~L---- 145 (283)
++|++||.++||||||+|+|++|+|+++-.+++.|+||..|+.+|++| ..+++.+++ ++.. ++.|
T Consensus 81 dia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~e-lav~i~~~~~~~~r~lL~KcA 159 (543)
T KOG0361|consen 81 DIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKE-LAVEIDGSSKTELRELLEKCA 159 (543)
T ss_pred HHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHH-heeEecccchhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 999999998 5764 2222
Q ss_pred -------EEecCCchhhhh---------------hhhhhhccCCCeeeEEEEeceEeccccCCCC---CcceecCCEEEE
Q 042442 146 -------EVGGDNDFFANL---------------GINILKAHVKSAIDSYLLNGYALNTGRAAQG---MPLRVAPPRIAC 200 (283)
Q Consensus 146 -------~is~~~~~~s~l---------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~---m~~~~~~~kIli 200 (283)
.++.+.+||+++ +|-|+|++||++.||.+++|+.|.+.|...+ .|+++.||||++
T Consensus 160 ~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~ 239 (543)
T KOG0361|consen 160 ATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILL 239 (543)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEE
Confidence 345577899988 5778899999999999999999999988653 589999999999
Q ss_pred ecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEee
Q 042442 201 LDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWL 280 (283)
Q Consensus 201 ~~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~ 280 (283)
+|..||....+.++++.+.++++++.+.+ .||+.+.+++++|.++|+|||++.-.|.|.|.+||++ .+|.+-.||
T Consensus 240 LnvELElKaEkdNAEiRv~~v~eyQ~iVD----AEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAd-rdiFCAGRV 314 (543)
T KOG0361|consen 240 LNVELELKAEKDNAEIRVDNVEEYQAIVD----AEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFAD-RDIFCAGRV 314 (543)
T ss_pred EeeeeeecccccCceeecCCHHHHHHHHh----HHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhc-cCceecCcC
Confidence 99999999999999999999999999999 9999999999999999999999999999999999998 888887776
Q ss_pred c
Q 042442 281 C 281 (283)
Q Consensus 281 ~ 281 (283)
-
T Consensus 315 ~ 315 (543)
T KOG0361|consen 315 P 315 (543)
T ss_pred C
Confidence 3
No 19
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-54 Score=417.42 Aligned_cols=265 Identities=35% Similarity=0.527 Sum_probs=243.2
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcC
Q 042442 11 RGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVG 90 (283)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (283)
+.+..+|.+++..|+.|++.+++++|+||||+||+|||+++.|+++|||||+||+++|+++||.|+|+++.|++|++++|
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~G 82 (524)
T COG0459 3 GKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAG 82 (524)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhc
Confidence 45678899999999999999999999999999999999999779999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---Cc-----eE----E-EecCCchhhh
Q 042442 91 DGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KH-----VL----E-VGGDNDFFAN 156 (283)
Q Consensus 91 DGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~-----~L----~-is~~~~~~s~ 156 (283)
|||||++||+++||++|.+++.+|+||+.|++||++| +.++++|++ ++.+ .+ .. . ...+.++|++
T Consensus 83 DGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~-~a~~v~~~~~~~~~~~t~v~sk~~~~~~~i~~ 161 (524)
T COG0459 83 DGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKE-IAKPVSDSEEELKIAITSVASKSANSDEEIGE 161 (524)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-hhccCCcchhhhhhhhheeeeeeccChHHHHH
Confidence 9999999999999999999999999999999999999 999999998 4877 22 11 1 2223468887
Q ss_pred h----------------hhhhhhccCCCeeeEEEEeceEecc-ccCCCCCc-ceecCCEEEEecccccccccccCeeEEE
Q 042442 157 L----------------GINILKAHVKSAIDSYLLNGYALNT-GRAAQGMP-LRVAPPRIACLDFNLQKTKIQLGVQVLV 218 (283)
Q Consensus 157 l----------------~I~i~k~~Gg~~~ds~li~G~v~~~-~~~~~~m~-~~~~~~kIli~~~~le~~k~~~~~~i~~ 218 (283)
+ .|.++|..|++.+++++++|++||+ ...|+.|| +.++||||++++++|++.+++.+.++.+
T Consensus 162 lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~l~~e~~i 241 (524)
T COG0459 162 LVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELPLEIVI 241 (524)
T ss_pred HHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccccCcceeEe
Confidence 7 3556677888889999999999999 45566788 8999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCc-EEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 219 TNPRELEKICQRFLHREA-DMVKERIEKLLKAGAN-VVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 219 ~s~~~l~~~~~~~~~~E~-~~i~~~v~~I~~~gv~-vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
++++++..+.+ +|+ +.+..+++++...|+| |+||+++|+|.+++||.+ ++|+++|||+
T Consensus 242 ~~~~~l~~i~e----~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d-~~Ilt~~~v~ 301 (524)
T COG0459 242 SSGKPLLIIAE----DEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLED-IAILTGRRVK 301 (524)
T ss_pred cCccHHHHHHH----HHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHh-hcceecceec
Confidence 99999999998 999 9999999999999999 999999999999999998 9999999986
No 20
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.1e-52 Score=401.47 Aligned_cols=236 Identities=27% Similarity=0.413 Sum_probs=213.9
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcC
Q 042442 11 RGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVG 90 (283)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (283)
+.+..+|.+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||++++++++|++|++++|
T Consensus 4 ~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~~G 83 (484)
T cd03342 4 KAEVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDITG 83 (484)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhHhC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-C-----ceE-----------EEecCCc
Q 042442 91 DGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-K-----HVL-----------EVGGDND 152 (283)
Q Consensus 91 DGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-~-----~~L-----------~is~~~~ 152 (283)
|||||+++|+++||++|.+++++|+||..|++||++| +.+++.|++ ++.+ . +.+ +++.+.+
T Consensus 84 DGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~-~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~ 162 (484)
T cd03342 84 DGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLES-FKVPVEIDTDRELLLSVARTSLRTKLHADLAD 162 (484)
T ss_pred CChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hcccCCCCCCHHHHHHHHHHHhCcccchhHHH
Confidence 9999999999999999999999999999999999999 999999988 4765 2 122 1222346
Q ss_pred hhhhh------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccCe
Q 042442 153 FFANL------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGV 214 (283)
Q Consensus 153 ~~s~l------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~~ 214 (283)
+|+++ +|+++++.||+.+||++++|++|++++.+++||++++||||++++|||++++++.++
T Consensus 163 ~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~~~~ 242 (484)
T cd03342 163 QLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNS 242 (484)
T ss_pred HHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCccccCc
Confidence 67776 355778889999999999999999999999999999999999999999999888776
Q ss_pred eEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 215 QVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 215 ~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
++.++ ||+|+++|+|.+++||.+ +||++++|+.
T Consensus 243 ~~~~~---------------------------------lvi~~~~I~~~al~~l~~-~~I~av~~~~ 275 (484)
T cd03342 243 GFFYS---------------------------------VVINQKGIDPPSLDMLAK-EGILALRRAK 275 (484)
T ss_pred EEEEE---------------------------------EEEeCCCccHHHHHHHHH-CCCeEEEeCC
Confidence 65432 999999999999999997 8999999985
No 21
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-52 Score=383.97 Aligned_cols=274 Identities=61% Similarity=0.847 Sum_probs=257.3
Q ss_pred ccCCCCCCcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHH
Q 042442 3 ILSQTPDTRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELA 82 (283)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~ 82 (283)
+.-+|.....++.+|+.+|..|..|+..+++++++||||-|++||+++..|.+++||||+|||+.+.++||++|++++.+
T Consensus 3 ~~~~~~~~~ge~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvela 82 (545)
T KOG0360|consen 3 EAKKPLLCKGERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELA 82 (545)
T ss_pred cccCCccccCCcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHH
Confidence 44578888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE-----------
Q 042442 83 ELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL----------- 145 (283)
Q Consensus 83 ~~~~~~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L----------- 145 (283)
+.|++++|||||+++++|++||+++.+|+.+++||..|++||+.| +.+++++.+.++.+ ++.|
T Consensus 83 q~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK 162 (545)
T KOG0360|consen 83 QLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSK 162 (545)
T ss_pred HhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcce
Confidence 999999999999999999999999999999999999999999999 99999998655554 2222
Q ss_pred EEecCCchhhhh----------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecc
Q 042442 146 EVGGDNDFFANL----------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDF 203 (283)
Q Consensus 146 ~is~~~~~~s~l----------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~ 203 (283)
+++...++|+++ .++|.|-+|++..+|.++.|+.++...++..||+++.++||++++|
T Consensus 163 ~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~ 242 (545)
T KOG0360|consen 163 IIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDF 242 (545)
T ss_pred ecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEec
Confidence 566677888876 4678899999999999999999999999999999999999999999
Q ss_pred cccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 204 NLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 204 ~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
.|+..+.+...++.+.+|++++++++ .|....++.+++|.+.|+|||+|++||||++++||.+ .|++++||++
T Consensus 243 ~Lqk~km~lGv~vvv~dp~kle~ir~----~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~ve-agamAVrR~~ 315 (545)
T KOG0360|consen 243 TLQKTKMKLGVQVVVDDPEKLEQIRQ----REQDITKERIKKILATGANVVLTTGGIDDMCLKYFVE-AGAMAVRRCK 315 (545)
T ss_pred ccccccccccceEEEcChHHHHHHHH----HHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHH-cchhhhHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999999999996 9999999975
No 22
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-51 Score=380.27 Aligned_cols=263 Identities=29% Similarity=0.480 Sum_probs=238.7
Q ss_pred CCCcccccccHH-HHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhh
Q 042442 8 PDTRGEHQSGQD-VRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQD 86 (283)
Q Consensus 8 ~~~~~~~~~g~~-~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~ 86 (283)
.-++++..+|.+ +...|++||+.+++++||+|||+||+||++|+.|++.+|||.+||+++++++||+||+++++++.|+
T Consensus 14 ~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv~a~~~q~ 93 (537)
T KOG0362|consen 14 LKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLVEATQMQE 93 (537)
T ss_pred HhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 347888888885 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-------Cce-E---EEe---cCC
Q 042442 87 REVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-------KHV-L---EVG---GDN 151 (283)
Q Consensus 87 ~~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-------~~~-L---~is---~~~ 151 (283)
++.||||+++|+|+++||++|.+||..|++|.+|++||+.| +++++.|++. ... ++. + +.+ .+.
T Consensus 94 ~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~l-v~~~~~d~~d~~~~~rs~i~skq~~~e 172 (537)
T KOG0362|consen 94 EEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPEL-VVQSIGDLEDKEWALRSVIMSKQYGNE 172 (537)
T ss_pred HhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHH-HHHhcccccChHHHHHHHHHHhhcchH
Confidence 99999999999999999999999999999999999999999 9999999883 332 121 1 111 123
Q ss_pred chhhhh-----------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccCe
Q 042442 152 DFFANL-----------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGV 214 (283)
Q Consensus 152 ~~~s~l-----------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~~ 214 (283)
++++++ +|+++|++|+++++|.++.||+|++.+. +.++..+++||+++.||++...+++++
T Consensus 173 d~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~e--G~v~~ak~arvAvf~cP~d~~~TEtkg 250 (537)
T KOG0362|consen 173 DFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPE--GEVKSAKDARVAVFACPFDIAQTETKG 250 (537)
T ss_pred HHHHHHHHHHHHhhcccccccccceEEEEEecCCcccceeeEEEEeccccC--CcccccccceeEEEecCCCcccccCcc
Confidence 344433 7899999999999999999999997754 456888999999999999999999999
Q ss_pred eEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEE
Q 042442 215 QVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFV 278 (283)
Q Consensus 215 ~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~ 278 (283)
++.++|++++.+|.+ .|++.++.+++.|...|++||++.+.|+++++||+++ .+|+++|
T Consensus 251 TvLi~~A~el~~FSK----gEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnk-y~ImVlq 309 (537)
T KOG0362|consen 251 TVLLKNAKELLNFSK----GEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNK-YKIMVLQ 309 (537)
T ss_pred eeeecCcHhhhhhcc----ccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhcc-ccEEEEE
Confidence 999999999999999 9999999999999999999999999999999999997 9999987
No 23
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-50 Score=391.62 Aligned_cols=224 Identities=34% Similarity=0.524 Sum_probs=203.2
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcC
Q 042442 11 RGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVG 90 (283)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (283)
+.+..+|.+++..|+.||..+++++++||||+||+|||+++.|+++|||||+|||++|+++||+++|++++|++|++++|
T Consensus 8 ~~~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q~~~~G 87 (480)
T cd03337 8 NTKRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQDEEVG 87 (480)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhHHHHhC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE-----------EEecCCch
Q 042442 91 DGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL-----------EVGGDNDF 153 (283)
Q Consensus 91 DGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L-----------~is~~~~~ 153 (283)
|||||+++|+++||++|.+|+++|+||+.|++||++| +.+++.|++ ++++ ++.| ..+.+.+.
T Consensus 88 DGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ 166 (480)
T cd03337 88 DGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEE-ISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDL 166 (480)
T ss_pred CCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-hccccccCCHHHHHHHHHHHhccCcchhHHHH
Confidence 9999999999999999999999999999999999999 999999988 4766 1112 11122233
Q ss_pred hhhh-----------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEeccccccccc
Q 042442 154 FANL-----------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKI 210 (283)
Q Consensus 154 ~s~l-----------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~ 210 (283)
|+++ +|++.+++|++.+||++++|++|++++.++.|+++++||||++++|||++
T Consensus 167 ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~--- 243 (480)
T cd03337 167 MCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEY--- 243 (480)
T ss_pred HHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCcce---
Confidence 4433 25678888999999999999999999999999999999999999999985
Q ss_pred ccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 211 QLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 211 ~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
||+|+++|+|.|++||.+ +||++++|+.
T Consensus 244 ------------------------------------------lvi~~k~I~d~al~~L~~-~~I~~v~~v~ 271 (480)
T cd03337 244 ------------------------------------------LVITEKGVSDLAQHYLVK-AGITALRRVR 271 (480)
T ss_pred ------------------------------------------EEEeCCCccHHHHHHHHH-CCcEEEEeCC
Confidence 999999999999999997 9999999985
No 24
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-50 Score=362.04 Aligned_cols=264 Identities=35% Similarity=0.558 Sum_probs=243.4
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecC--CCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhh
Q 042442 10 TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDD--IGDVKITNDGATILKMLEIEHPAAKVLVELAELQDR 87 (283)
Q Consensus 10 ~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~--~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~ 87 (283)
.+.....|+.++...|-++..++|+++|||||+||+|+++.. .|.+.+||||+|||+++.+++|+||++++.++-||+
T Consensus 9 ~~~~eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~~S~vQD~ 88 (527)
T KOG0363|consen 9 DGATEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVDISKVQDD 88 (527)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheecccccccc
Confidence 456677899999999999999999999999999999999864 478999999999999999999999999999999999
Q ss_pred HcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc--------CceE-----------EE
Q 042442 88 EVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD--------KHVL-----------EV 147 (283)
Q Consensus 88 ~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~--------~~~L-----------~i 147 (283)
++|||||+++||+++||++|.+|+.+.+||+.|+.|||.| ..+++.|.+. +++ ++.| ++
T Consensus 89 EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~-s~dns~~~~kfr~DLl~iarTTL~SKiL 167 (527)
T KOG0363|consen 89 EVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKS-SIDNSSDKEKFREDLLKIARTTLSSKIL 167 (527)
T ss_pred ccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHh-hhhccCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 9999999873 654 2223 45
Q ss_pred ecCCchhhhh---------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEeccccccccccc
Q 042442 148 GGDNDFFANL---------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQL 212 (283)
Q Consensus 148 s~~~~~~s~l---------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~ 212 (283)
+...++|+++ .|+|+|+.||++.||++-+|+++++.+.. +.|++++||||++.|.+++.+|.+.
T Consensus 168 sq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv-~qpkriena~iLIANT~mDtDKvKv 246 (527)
T KOG0363|consen 168 SQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKVKV 246 (527)
T ss_pred HhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccccccccceeccccCC-CCcccccccceEEecCCCcccceee
Confidence 6677899988 67899999999999999999999998653 6899999999999999999999886
Q ss_pred -CeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEee
Q 042442 213 -GVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWL 280 (283)
Q Consensus 213 -~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~ 280 (283)
.+.|.++|..++.++.. .|+++++.+|++|.+.|+||.++.+-|+++..+.|.. .||++++|-
T Consensus 247 fGarvrVds~~klaelE~----AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~d-agi~aIEHA 310 (527)
T KOG0363|consen 247 FGARVRVDSTAKLAELEK----AEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFAD-AGIMAIEHA 310 (527)
T ss_pred ecceEeecchhHHHHHHH----HHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhh-cCcceeecc
Confidence 68899999999999999 9999999999999999999999999999999999997 999999873
No 25
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=8.4e-49 Score=379.59 Aligned_cols=244 Identities=37% Similarity=0.557 Sum_probs=223.3
Q ss_pred HHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcCCCchhHHHHHHHHHHHHHHh
Q 042442 31 VANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDL 110 (283)
Q Consensus 31 l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt~vvLa~~LL~~a~~l 110 (283)
|++++++||||+|++|||++..|++++||||+||+++++++||+++++++++++|++++||||||+++|+++||+++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---C-ceE-----------EEecCCchhhhh---------------hh
Q 042442 111 VRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---K-HVL-----------EVGGDNDFFANL---------------GI 159 (283)
Q Consensus 111 i~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~-~~L-----------~is~~~~~~s~l---------------~I 159 (283)
+++|+||..|++||+.| +.+++.|++ ++++ . +.| ..+.+.++++++ .+
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~-~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i 159 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEK-ISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNI 159 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHH-HSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGE
T ss_pred hhccccccchhhhhhhhhhhhhhhhhh-hhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccccch
Confidence 99999999999999999 999999988 4766 2 334 111223566655 25
Q ss_pred hhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHH
Q 042442 160 NILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMV 239 (283)
Q Consensus 160 ~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i 239 (283)
+++++.|++.+||++++|+++++++.++.|++++++|||++++++|+++++ .++++.++++++++.+.+ +|++++
T Consensus 160 ~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~----~e~~~l 234 (485)
T PF00118_consen 160 KIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSK----QEKKYL 234 (485)
T ss_dssp EEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHH----HHHHHH
T ss_pred hhhhhccccccccccccceeeeccccccccccccccceEEeeecccccccc-cccccchhhHHHHHHHHh----hhhhhh
Confidence 567789999999999999999999999999999999999999999999999 899999999999999999 999999
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 240 KERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 240 ~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+++++++.+.|+++|+++++|++.+++||.+ +||++++||.
T Consensus 235 ~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~-~~I~~i~~v~ 275 (485)
T PF00118_consen 235 KKILEKIINLGVNLIISQKSIDDEALQYLNK-NGILVIRRVS 275 (485)
T ss_dssp HHHHHHHHTTTSSEEEESSEBTHHHHHHHHH-CTHEEESSEH
T ss_pred ccccceEeeeccceeeeecccccccchhhhh-hhhhccccch
Confidence 9999999999999999999999999999997 9999999985
No 26
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.3e-47 Score=375.12 Aligned_cols=239 Identities=18% Similarity=0.264 Sum_probs=209.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccc----hhHHHHHHHHHhhhH
Q 042442 13 EHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHP----AAKVLVELAELQDRE 88 (283)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 88 (283)
...+|.+++..|+.||+.++++++|||||+||+|||+++.|+++|||||+||+++|+++|| .|++++++|++|+++
T Consensus 4 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e 83 (542)
T PRK12849 4 IIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDV 83 (542)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCc
Confidence 4567899999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---CceE-----EEecCCchhhhhhh
Q 042442 89 VGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KHVL-----EVGGDNDFFANLGI 159 (283)
Q Consensus 89 ~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~~L-----~is~~~~~~s~l~I 159 (283)
+||||||+++||++||++|.+|+++|+||..|++||++| +.+++.|++ ++++ .+.| +.+.++++++++.+
T Consensus 84 ~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~-~s~~~~~~~~l~~va~ts~~~~~~l~~lv~ 162 (542)
T PRK12849 84 AGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKA-LARPVSGSEEIAQVATISANGDEEIGELIA 162 (542)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHHHHhcCChHHHHHHHH
Confidence 999999999999999999999999999999999999999 999999998 4877 2223 22345678898844
Q ss_pred hhhhc----------cCCCeee-EEEEeceEeccccCCCCC-------cceecCCEEEEecccccccccccCeeEEEcCH
Q 042442 160 NILKA----------HVKSAID-SYLLNGYALNTGRAAQGM-------PLRVAPPRIACLDFNLQKTKIQLGVQVLVTNP 221 (283)
Q Consensus 160 ~i~k~----------~Gg~~~d-s~li~G~v~~~~~~~~~m-------~~~~~~~kIli~~~~le~~k~~~~~~i~~~s~ 221 (283)
+.+.. .|++.+| +++++|++|++++.+++| +++++||+|+++|+.++ ++
T Consensus 163 ~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~-------------~~ 229 (542)
T PRK12849 163 EAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKIS-------------SL 229 (542)
T ss_pred HHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcC-------------CH
Confidence 43221 4666665 899999999999999865 78899999999999653 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcC------CceEEEeec
Q 042442 222 RELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDF------NFSHFVWLC 281 (283)
Q Consensus 222 ~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~------~i~~~~~~~ 281 (283)
+++. .+++++.+.|++||+++++|+|.|++||.+ | +|.+++|++
T Consensus 230 ~~~~---------------~~l~~i~~~~~~lvI~~~~I~~~al~~l~~-~~~~~~~~i~avr~~~ 279 (542)
T PRK12849 230 QDLL---------------PLLEKVAQSGKPLLIIAEDVEGEALATLVV-NKLRGGLKVAAVKAPG 279 (542)
T ss_pred HHHH---------------HHHHHHHHhCCCEEEECCCCcHHHHHHHHH-hhhhccccEEEEeCCC
Confidence 4433 367889999999999999999999999998 6 999999876
No 27
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=8.9e-48 Score=371.51 Aligned_cols=221 Identities=42% Similarity=0.610 Sum_probs=203.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcCCCc
Q 042442 14 HQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGT 93 (283)
Q Consensus 14 ~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGt 93 (283)
...|++++..|++||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++++++++++|++++||||
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGT 82 (464)
T cd00309 3 REFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGT 82 (464)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCch
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE-----------EEecCCchhhh
Q 042442 94 TSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL-----------EVGGDNDFFAN 156 (283)
Q Consensus 94 tt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L-----------~is~~~~~~s~ 156 (283)
||+++|+++||+++.+++++|+||+.|++||++| +.+++.|++ ++++ ++.| ..+.+++++++
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~ 161 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKE-IAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGE 161 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hcCccCCCCHHHHHHHhHhcccccccccchHHHHH
Confidence 9999999999999999999999999999999999 999999998 4775 2222 12234566676
Q ss_pred h------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccCeeEEE
Q 042442 157 L------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLV 218 (283)
Q Consensus 157 l------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~~~i~~ 218 (283)
+ .|++.+.+||+++||++++|++|++++.+++|+++++||||++++|+|++
T Consensus 162 l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~----------- 230 (464)
T cd00309 162 LVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY----------- 230 (464)
T ss_pred HHHHHHHHhccccCccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcce-----------
Confidence 6 35677889999999999999999999999999999999999999999986
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 219 TNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 219 ~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
||+++++|+|.|++||.+ +||.+++|+.
T Consensus 231 ----------------------------------lIi~~~~I~~~al~~L~~-~~I~~v~~~~ 258 (464)
T cd00309 231 ----------------------------------VVIAEKGIDDEALHYLAK-LGIMAVRRVR 258 (464)
T ss_pred ----------------------------------EEecCCCcCHHHHHHHHH-CCeEEEEeCC
Confidence 999999999999999997 9999999975
No 28
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.3e-47 Score=373.46 Aligned_cols=238 Identities=19% Similarity=0.313 Sum_probs=208.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccc----hhHHHHHHHHHhhhH
Q 042442 13 EHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHP----AAKVLVELAELQDRE 88 (283)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 88 (283)
...+|.+++..|++||+.+++++++||||+||+|||+++.|+++|||||+|||++|+++|| .+++++++|++|+++
T Consensus 4 ~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e 83 (542)
T PRK00013 4 DIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDV 83 (542)
T ss_pred hhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcc
Confidence 4567899999999999999999999999999999999999999999999999999999999 699999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---CceE----EEe-cCCchhhhhhh
Q 042442 89 VGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KHVL----EVG-GDNDFFANLGI 159 (283)
Q Consensus 89 ~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~~L----~is-~~~~~~s~l~I 159 (283)
+||||||+++|+++||+++.+++++|+||..|++||+.| +.++++|++ +++| .+.| ..+ .++++++++.+
T Consensus 84 ~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~-~a~~~~~~~~l~~va~ts~~~~~~ls~lv~ 162 (542)
T PRK00013 84 AGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKK-ISKPVEDKEEIAQVATISANGDEEIGKLIA 162 (542)
T ss_pred cCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHHHhcccchHHHHHHHH
Confidence 999999999999999999999999999999999999999 999999998 4877 2223 223 35678888843
Q ss_pred hhh------------hccCCCeeeEEEEeceEeccccCCCCC-------cceecCCEEEEecccccccccccCeeEEEcC
Q 042442 160 NIL------------KAHVKSAIDSYLLNGYALNTGRAAQGM-------PLRVAPPRIACLDFNLQKTKIQLGVQVLVTN 220 (283)
Q Consensus 160 ~i~------------k~~Gg~~~ds~li~G~v~~~~~~~~~m-------~~~~~~~kIli~~~~le~~k~~~~~~i~~~s 220 (283)
+.+ +..| +..++++++|++|++++.+++| +++++||+|+++|++++ +
T Consensus 163 ~Av~~v~~~g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~-------------~ 228 (542)
T PRK00013 163 EAMEKVGKEGVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKIS-------------N 228 (542)
T ss_pred HHHHHhCcCCcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccC-------------C
Confidence 333 3333 5579999999999999999976 78899999999999653 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCC------ceEEEeec
Q 042442 221 PRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFN------FSHFVWLC 281 (283)
Q Consensus 221 ~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~------i~~~~~~~ 281 (283)
++++. .+++++.+.|++||+++++|+|.|++||.+ |+ |.+++|++
T Consensus 229 ~~~l~---------------~~l~~i~~~g~~lvi~~~~I~~~al~~l~~-~~~~g~~~i~avr~~~ 279 (542)
T PRK00013 229 IQDLL---------------PVLEQVAQSGKPLLIIAEDVEGEALATLVV-NKLRGTLKVVAVKAPG 279 (542)
T ss_pred HHHHH---------------HHHHHHHHhCCCEEEECCCCcHHHHHHHHH-cCCcccceEEEEecCC
Confidence 44443 457889999999999999999999999997 64 99999875
No 29
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.1e-47 Score=369.25 Aligned_cols=220 Identities=29% Similarity=0.478 Sum_probs=196.5
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcCCCchh
Q 042442 16 SGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTS 95 (283)
Q Consensus 16 ~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt 95 (283)
.+++++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++++++++++|++++||||||
T Consensus 5 ~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTTt 84 (472)
T cd03341 5 GLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTNL 84 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-------CceE------E----EecCCchhhhh
Q 042442 96 VVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-------KHVL------E----VGGDNDFFANL 157 (283)
Q Consensus 96 ~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-------~~~L------~----is~~~~~~s~l 157 (283)
+++|+++||+++.+++++|+||+.|++||+.| +.+++.|++. +.+ .+.+ . ...+.++|+++
T Consensus 85 ~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~-~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l 163 (472)
T cd03341 85 VVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEEL-VVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPL 163 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh-hccccCCccCHHHHHHHHHHHhcccccchHHHHHHH
Confidence 99999999999999999999999999999999 9999999884 643 1112 1 11234566665
Q ss_pred -------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccCeeEEE
Q 042442 158 -------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLV 218 (283)
Q Consensus 158 -------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~~~i~~ 218 (283)
.++|++++|++.+||++++|++|++.+. .++++++||||+++++||++
T Consensus 164 ~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~~~~~~n~~Ili~~~~Le~----------- 230 (472)
T cd03341 164 VAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVKKAKVAVFSCPFDI----------- 230 (472)
T ss_pred HHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccC--CCceeccCCcEEEEeccccC-----------
Confidence 4556777899999999999999987653 45688999999999999985
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 219 TNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 219 ~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
|++||+++++|+|.+++||++ +||++++|++
T Consensus 231 -------------------------------g~~lvi~~~~I~d~al~~l~~-~~I~av~~~~ 261 (472)
T cd03341 231 -------------------------------GVNVIVAGGSVGDLALHYCNK-YGIMVIKINS 261 (472)
T ss_pred -------------------------------CCeEEEECCCCCHHHHHHHHH-CCeEEEEeCC
Confidence 899999999999999999997 9999999986
No 30
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=3.8e-47 Score=373.27 Aligned_cols=239 Identities=18% Similarity=0.282 Sum_probs=210.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccc----hhHHHHHHHHHhhhH
Q 042442 13 EHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHP----AAKVLVELAELQDRE 88 (283)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 88 (283)
+...|.+++..|++||..++++++|||||+||+|||+++.|+++|||||+||+++|+++|| .++|++++|++|+++
T Consensus 16 ~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~e 95 (555)
T PTZ00114 16 EIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDK 95 (555)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccc
Confidence 4667889999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---CceE-----EEecCCchhhhhhh
Q 042442 89 VGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KHVL-----EVGGDNDFFANLGI 159 (283)
Q Consensus 89 ~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~~L-----~is~~~~~~s~l~I 159 (283)
+||||||+++||++||+++.+++++|+||..|++||++| +.+++.|++ ++.+ .+.| +.+.++++++++.+
T Consensus 96 vGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~-~s~~v~~~~~l~~va~ts~~~~~~l~~li~ 174 (555)
T PTZ00114 96 AGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKE-QSRPVKTKEDILNVATISANGDVEIGSLIA 174 (555)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHHHHHcCChHHHHHHHH
Confidence 999999999999999999999999999999999999999 999999998 4876 2233 22234677888833
Q ss_pred h----------hhhccCCCeeeE-EEEeceEeccccCCCCC-------cceecCCEEEEecccccccccccCeeEEEcCH
Q 042442 160 N----------ILKAHVKSAIDS-YLLNGYALNTGRAAQGM-------PLRVAPPRIACLDFNLQKTKIQLGVQVLVTNP 221 (283)
Q Consensus 160 ~----------i~k~~Gg~~~ds-~li~G~v~~~~~~~~~m-------~~~~~~~kIli~~~~le~~k~~~~~~i~~~s~ 221 (283)
+ |.+..|+++.++ ++++|++|++++.+++| ++.+++|+|+++|++|+ ++
T Consensus 175 eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~-------------~~ 241 (555)
T PTZ00114 175 DAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKIS-------------SI 241 (555)
T ss_pred HHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCC-------------CH
Confidence 2 345578888887 89999999999999876 78899999999999987 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCC------ceEEEeec
Q 042442 222 RELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFN------FSHFVWLC 281 (283)
Q Consensus 222 ~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~------i~~~~~~~ 281 (283)
++ +...++++.+.|+++++++++|++.|++||.+ |+ |.+++|.+
T Consensus 242 ~~---------------i~~~le~i~~~~~~llI~~~~i~~~al~~L~~-n~~~g~~~i~avk~~~ 291 (555)
T PTZ00114 242 QS---------------ILPILEHAVKNKRPLLIIAEDVEGEALQTLII-NKLRGGLKVCAVKAPG 291 (555)
T ss_pred HH---------------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHH-hCCCCceEEEEEecCC
Confidence 33 33467889999999999999999999999997 54 99999853
No 31
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=4.3e-47 Score=370.82 Aligned_cols=240 Identities=20% Similarity=0.306 Sum_probs=208.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccc----hhHHHHHHHHHhhhH
Q 042442 13 EHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHP----AAKVLVELAELQDRE 88 (283)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 88 (283)
...+|.+++..|++|++.++++++|||||+||+|||+++.|+++|||||+||+++|+++|| .+++++++|++|+++
T Consensus 3 ~~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 82 (524)
T TIGR02348 3 QIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDV 82 (524)
T ss_pred cccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCce
Confidence 3457889999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---CceE-----EEecCCchhhhhhh
Q 042442 89 VGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KHVL-----EVGGDNDFFANLGI 159 (283)
Q Consensus 89 ~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~~L-----~is~~~~~~s~l~I 159 (283)
+||||||+++||++||+++.+++++|+||..|++||+.| +.++++|++ ++++ .+.| +.+.++++++++.+
T Consensus 83 ~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~-~s~~~~~~~~l~~va~ts~~~~~~l~~lv~ 161 (524)
T TIGR02348 83 AGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKK-LSKPVKGKKEIAQVATISANNDEEIGSLIA 161 (524)
T ss_pred eCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHHHHhccChHHHHHHHH
Confidence 999999999999999999999999999999999999999 999999998 4877 2223 22234678888844
Q ss_pred hhhhc----------cCCCe-eeEEEEeceEeccccCCCCC-------cceecCCEEEEecccccccccccCeeEEEcCH
Q 042442 160 NILKA----------HVKSA-IDSYLLNGYALNTGRAAQGM-------PLRVAPPRIACLDFNLQKTKIQLGVQVLVTNP 221 (283)
Q Consensus 160 ~i~k~----------~Gg~~-~ds~li~G~v~~~~~~~~~m-------~~~~~~~kIli~~~~le~~k~~~~~~i~~~s~ 221 (283)
+.+.. .|+.. .++++++|++|++++.+++| ++.++||+|++++++++ ++
T Consensus 162 ~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~-------------~~ 228 (524)
T TIGR02348 162 EAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKIS-------------NI 228 (524)
T ss_pred HHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcC-------------CH
Confidence 32221 24455 67999999999999999986 78899999999999654 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcC-----CceEEEeec
Q 042442 222 RELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDF-----NFSHFVWLC 281 (283)
Q Consensus 222 ~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~-----~i~~~~~~~ 281 (283)
++ +..+++++.+.|++||+++++|+|.|++||.+.+ +|++++|++
T Consensus 229 ~~---------------i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~ 278 (524)
T TIGR02348 229 KD---------------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPG 278 (524)
T ss_pred HH---------------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCC
Confidence 33 3446888999999999999999999999999732 899999874
No 32
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.3e-46 Score=364.13 Aligned_cols=238 Identities=21% Similarity=0.318 Sum_probs=208.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccc----hhHHHHHHHHHhhhHc
Q 042442 14 HQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHP----AAKVLVELAELQDREV 89 (283)
Q Consensus 14 ~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~~ 89 (283)
..+|.+++..|++||+.++++++|||||+||+|||+++.|+++|||||+||+++|+++|| .++++++++++|++++
T Consensus 3 ~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~ 82 (520)
T cd03344 3 IKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVA 82 (520)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcccc
Confidence 457889999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---CceE-----EEecCCchhhhhhhh
Q 042442 90 GDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KHVL-----EVGGDNDFFANLGIN 160 (283)
Q Consensus 90 GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~~L-----~is~~~~~~s~l~I~ 160 (283)
||||||+++||++||+++.+++++|+||..|++||+.| +.++++|++ ++++ .+.| .....+++++++.++
T Consensus 83 GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~-~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~ 161 (520)
T cd03344 83 GDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKK-LSKPVKTKEEIAQVATISANGDEEIGELIAE 161 (520)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHHHHhcCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999 999999998 4877 2223 222346788888433
Q ss_pred hhh----------ccCCCeee-EEEEeceEeccccCCCCC---c----ceecCCEEEEecccccccccccCeeEEEcCHH
Q 042442 161 ILK----------AHVKSAID-SYLLNGYALNTGRAAQGM---P----LRVAPPRIACLDFNLQKTKIQLGVQVLVTNPR 222 (283)
Q Consensus 161 i~k----------~~Gg~~~d-s~li~G~v~~~~~~~~~m---~----~~~~~~kIli~~~~le~~k~~~~~~i~~~s~~ 222 (283)
.+. ..|++.+| +++++|++|++++.+++| | ++++||+|+++|++++ +++
T Consensus 162 A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~-------------~~~ 228 (520)
T cd03344 162 AMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKIS-------------SIQ 228 (520)
T ss_pred HHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCC-------------CHH
Confidence 221 36777777 799999999999999886 3 5789999999999963 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCc------eEEEeec
Q 042442 223 ELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNF------SHFVWLC 281 (283)
Q Consensus 223 ~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i------~~~~~~~ 281 (283)
++. .+++++.+.|++||+++++|+|.|++||.+ ||| .+++|.+
T Consensus 229 ~l~---------------~~l~~i~~~~~~lvi~~~~i~~~al~~l~~-~~i~~~~~v~avk~~~ 277 (520)
T cd03344 229 ELL---------------PILELVAKAGRPLLIIAEDVEGEALATLVV-NKLRGGLKVCAVKAPG 277 (520)
T ss_pred HHH---------------HHHHHHHhhCCCEEEEcCCCCHHHHHHHHH-cCCccCceEEEEeCCC
Confidence 433 257889999999999999999999999997 988 8998874
No 33
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.7e-46 Score=367.54 Aligned_cols=238 Identities=18% Similarity=0.266 Sum_probs=208.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccc----hhHHHHHHHHHhhhH
Q 042442 13 EHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHP----AAKVLVELAELQDRE 88 (283)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~~ 88 (283)
...+|.+++..|+++++.+++++++||||+||+|||+++.|+++|||||+||+++|+++|| .+++++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e 84 (541)
T PRK12851 5 EVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDV 84 (541)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHh
Confidence 4556788999999999999999999999999999999999999999999999999999999 889999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---CceE-----EEecCCchhhhhhh
Q 042442 89 VGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KHVL-----EVGGDNDFFANLGI 159 (283)
Q Consensus 89 ~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~~L-----~is~~~~~~s~l~I 159 (283)
+||||||+++|+++||+++.+|+++|+||..|++||+.| +.+++.|++ ++++ .+.| +.+.++++|+++.+
T Consensus 85 ~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~-~s~~~~~~~~l~~va~~s~~~~~~l~~lv~ 163 (541)
T PRK12851 85 AGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKA-NARPVTTNAEIAQVATISANGDAEIGRLVA 163 (541)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHHHHhccChHHHHHHHH
Confidence 999999999999999999999999999999999999999 999999998 4876 2223 22245778898855
Q ss_pred hhhhccC-----------CCeeeEEEEeceEeccccCCCC-------CcceecCCEEEEecccccccccccCeeEEEcCH
Q 042442 160 NILKAHV-----------KSAIDSYLLNGYALNTGRAAQG-------MPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNP 221 (283)
Q Consensus 160 ~i~k~~G-----------g~~~ds~li~G~v~~~~~~~~~-------m~~~~~~~kIli~~~~le~~k~~~~~~i~~~s~ 221 (283)
+.+...| ++..++++++|++|++++.+++ |+++++||+|+++|++++ +.
T Consensus 164 ~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~-------------~~ 230 (541)
T PRK12851 164 EAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKIS-------------NL 230 (541)
T ss_pred HHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcC-------------cH
Confidence 4433221 3456799999999999999986 899999999999999853 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCc------eEEEee
Q 042442 222 RELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNF------SHFVWL 280 (283)
Q Consensus 222 ~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i------~~~~~~ 280 (283)
+ .+..+++++.+.|++||+++++|+|.|++||.+ ||| .+++|-
T Consensus 231 ~---------------~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~-n~i~g~~~i~av~~p 279 (541)
T PRK12851 231 Q---------------DLLPVLEAVVQSGKPLLIIAEDVEGEALATLVV-NKLRGGLKVAAVKAP 279 (541)
T ss_pred H---------------HHHHHHHHHHHhCcCEEEECCCCChHHHHHHHH-cCCcCceeEEEEecC
Confidence 1 245578899999999999999999999999997 886 889873
No 34
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.8e-46 Score=365.26 Aligned_cols=237 Identities=18% Similarity=0.294 Sum_probs=207.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccch----hHHHHHHHHHhhhH
Q 042442 13 EHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPA----AKVLVELAELQDRE 88 (283)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~----~~ll~~~~~~~~~~ 88 (283)
...+|.+++..|+.||+.++++++|||||+||+|||+++.|+++|||||+||+++|+++||+ +++++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e 84 (544)
T PRK12850 5 EIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDL 84 (544)
T ss_pred eecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcch
Confidence 45567899999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---CceE-----EEecCCchhhhhhh
Q 042442 89 VGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KHVL-----EVGGDNDFFANLGI 159 (283)
Q Consensus 89 ~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~~L-----~is~~~~~~s~l~I 159 (283)
+||||||+++||++||++|.+|+++|+||..|++||+.| +.++++|++ ++++ .+.| +...+++.++++.+
T Consensus 85 ~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~-~s~~v~~~~~l~~va~~s~~~~~~l~~lv~ 163 (544)
T PRK12850 85 AGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKK-IAKKVTSSKEIAQVATISANGDESIGEMIA 163 (544)
T ss_pred hcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHH-hccCCCCHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999 999999998 4876 2223 22235678898865
Q ss_pred hhhhccCC-----------CeeeEEEEeceEeccccCCCCC-------cceecCCEEEEecccccccccccCeeEEEcCH
Q 042442 160 NILKAHVK-----------SAIDSYLLNGYALNTGRAAQGM-------PLRVAPPRIACLDFNLQKTKIQLGVQVLVTNP 221 (283)
Q Consensus 160 ~i~k~~Gg-----------~~~ds~li~G~v~~~~~~~~~m-------~~~~~~~kIli~~~~le~~k~~~~~~i~~~s~ 221 (283)
+.+...|. .-.++++++|++|++++.+++| +++++||+|+++|+.++ +.
T Consensus 164 eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~-------------~~ 230 (544)
T PRK12850 164 EAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKIS-------------NL 230 (544)
T ss_pred HHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccC-------------CH
Confidence 55543331 1148999999999999999886 78899999999999653 21
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCc------eEEEe
Q 042442 222 RELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNF------SHFVW 279 (283)
Q Consensus 222 ~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i------~~~~~ 279 (283)
+ .+..+++++.+.|++||+++++|+|.|++||.+ |+| .+++|
T Consensus 231 ~---------------~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~-n~i~~~~~~~avk~ 278 (544)
T PRK12850 231 Q---------------DLLPILEAVVQSGRPLLIIAEDVEGEALATLVV-NKLRGGLKSVAVKA 278 (544)
T ss_pred H---------------HHHHHHHHHHHhCCCEEEECCCCChHHHHHHHH-cCCcccceEEEEeC
Confidence 1 255678899999999999999999999999997 999 99998
No 35
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-47 Score=350.59 Aligned_cols=271 Identities=31% Similarity=0.458 Sum_probs=244.8
Q ss_pred CCCCC---CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHH
Q 042442 5 SQTPD---TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVEL 81 (283)
Q Consensus 5 ~~~~~---~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~ 81 (283)
.+|.. .++.+.+|..++..|+.|+++++|.+++++||+.|.||+.++.|.+..||||..||+++++.||+|+-++++
T Consensus 2 ~apv~~~~~~~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel 81 (527)
T KOG0364|consen 2 QAPVLVLSKNTKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIEL 81 (527)
T ss_pred CCceeecccccCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhh
Confidence 34544 466788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---Cc---eE---------
Q 042442 82 AELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KH---VL--------- 145 (283)
Q Consensus 82 ~~~~~~~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~---~L--------- 145 (283)
+.+||+++||||||+++|++|+|.++..++++|+||..|+++|.+| ..++..++. .+.+ ++ .+
T Consensus 82 ~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~-~~~~~d~~~~~km~~vi~~~v~t 160 (527)
T KOG0364|consen 82 SRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDK-ISIPVDVKDQAKMLRVINSSVGT 160 (527)
T ss_pred hhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHh-hcccCCcccHHHHHhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999 999999986 3655 11 11
Q ss_pred -EEecCCchhhhh--------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEeccc
Q 042442 146 -EVGGDNDFFANL--------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFN 204 (283)
Q Consensus 146 -~is~~~~~~s~l--------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~ 204 (283)
+++..++...++ +.++.|++||.+.+|++++|+.+.+...||.|.+.++||||.++|||
T Consensus 161 k~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~ 240 (527)
T KOG0364|consen 161 KFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCP 240 (527)
T ss_pred hhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCC
Confidence 111112222222 56788999999999999999999999999999999999999999999
Q ss_pred ccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 205 LQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 205 le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
|+|.+.+++.++.+.-.+++....+ -|++++..+++.|....+|+|+|++|++|.|+|||.+ +||+++|++.
T Consensus 241 LeykkGeSqtnve~~~eed~~r~Lq----ieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k-~~iT~~rr~r 312 (527)
T KOG0364|consen 241 LEYKKGESQTNVEIVKEEDFTRILQ----IEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLK-ANITAIRRLR 312 (527)
T ss_pred ccCCCCccccceeeeechhHHHHHH----hhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHh-cCchhhhhhh
Confidence 9999999999999999999998888 9999999999999999999999999999999999998 9999999874
No 36
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.7e-45 Score=360.02 Aligned_cols=241 Identities=17% Similarity=0.215 Sum_probs=206.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhH----HHHHHHHHhhhH
Q 042442 13 EHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAK----VLVELAELQDRE 88 (283)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~----ll~~~~~~~~~~ 88 (283)
....|.+++.+.+++|+.+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++ |++++|.+|+++
T Consensus 4 ~~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e 83 (529)
T CHL00093 4 KILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDV 83 (529)
T ss_pred eeecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCce
Confidence 4556789999999999999999999999999999999999999999999999999999999995 788899999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---CceE----EEe-cCCchhhhhhh
Q 042442 89 VGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KHVL----EVG-GDNDFFANLGI 159 (283)
Q Consensus 89 ~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~~L----~is-~~~~~~s~l~I 159 (283)
+||||||++||+++||++|.+++++|+||+.|++||++| +.+++.|++ ++++ ++.| .++ .+++.|+++.+
T Consensus 84 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~-~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~ 162 (529)
T CHL00093 84 AGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAE-YARPVEDIQAITQVASISAGNDEEVGSMIA 162 (529)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHhccChHHHHHHHH
Confidence 999999999999999999999999999999999999999 999999998 5877 2334 223 35788999965
Q ss_pred hhhhccC-----------CCeeeEEEEeceEeccccCCCCC---cc----eecCCEEEEecccccccccccCeeEEEcCH
Q 042442 160 NILKAHV-----------KSAIDSYLLNGYALNTGRAAQGM---PL----RVAPPRIACLDFNLQKTKIQLGVQVLVTNP 221 (283)
Q Consensus 160 ~i~k~~G-----------g~~~ds~li~G~v~~~~~~~~~m---~~----~~~~~kIli~~~~le~~k~~~~~~i~~~s~ 221 (283)
+.+...| ++.+++++++|++|++++.+++| ++ +++||||++++++|++.+
T Consensus 163 eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~------------ 230 (529)
T CHL00093 163 DAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQ------------ 230 (529)
T ss_pred HHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchH------------
Confidence 5554332 23467799999999999999986 44 489999999999999532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHH--Hhc---CCceEEEeec
Q 042442 222 RELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKAS--LSD---FNFSHFVWLC 281 (283)
Q Consensus 222 ~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l--~~~---~~i~~~~~~~ 281 (283)
..+..+++++.+.|+++|+++++|++.++.+| ++. ++|.+++|++
T Consensus 231 ---------------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~ 280 (529)
T CHL00093 231 ---------------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPG 280 (529)
T ss_pred ---------------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCC
Confidence 12455788999999999999999999666544 764 5899999985
No 37
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.8e-45 Score=359.55 Aligned_cols=240 Identities=18% Similarity=0.295 Sum_probs=208.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhccc----ccchhHHHHHHHHHhhhH
Q 042442 13 EHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEI----EHPAAKVLVELAELQDRE 88 (283)
Q Consensus 13 ~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~----~hP~~~ll~~~~~~~~~~ 88 (283)
....|.+++..|+.|+..+++++++||||+||+|||+++.|+++|||||+||+++|++ +||.+++++++|++|+++
T Consensus 5 ~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e 84 (545)
T PRK12852 5 DVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDL 84 (545)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCce
Confidence 4556788999999999999999999999999999999999999999999999999999 499999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---CceE----EEe-cCCchhhhhhh
Q 042442 89 VGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KHVL----EVG-GDNDFFANLGI 159 (283)
Q Consensus 89 ~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~~L----~is-~~~~~~s~l~I 159 (283)
+||||||+++||++||+++.+|+++|+||..|++||++| +.+++.|++ ++++ .+.+ .++ ..+++++++.+
T Consensus 85 ~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~-~s~~v~~~~~l~~va~~s~~~~~~l~~li~ 163 (545)
T PRK12852 85 AGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEK-RAKPVASSAEIAQVGTISANGDAAIGKMIA 163 (545)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH-hcccCCCHHHHHHHHhhhcCChHHHHHHHH
Confidence 999999999999999999999999999999999999999 999999998 4877 2223 233 34578898855
Q ss_pred hhhhc----------cCCCe-eeEEEEeceEeccccCCCC-------CcceecCCEEEEecccccccccccCeeEEEcCH
Q 042442 160 NILKA----------HVKSA-IDSYLLNGYALNTGRAAQG-------MPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNP 221 (283)
Q Consensus 160 ~i~k~----------~Gg~~-~ds~li~G~v~~~~~~~~~-------m~~~~~~~kIli~~~~le~~k~~~~~~i~~~s~ 221 (283)
+.+.. .|++. .++++++|++|++++.+++ |+..++||+|+++++.++ ++
T Consensus 164 eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~-------------~~ 230 (545)
T PRK12852 164 QAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLS-------------GL 230 (545)
T ss_pred HHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccC-------------CH
Confidence 53322 24454 6999999999999999987 788899999999998653 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhc-----CCceEEEeec
Q 042442 222 RELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSD-----FNFSHFVWLC 281 (283)
Q Consensus 222 ~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~-----~~i~~~~~~~ 281 (283)
+ .+..+++++.+.|++||+++++|+|.|++||... .+|.+++|.+
T Consensus 231 ~---------------~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~ 280 (545)
T PRK12852 231 Q---------------AMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPG 280 (545)
T ss_pred H---------------HHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCC
Confidence 2 3444688999999999999999999999999973 2899999865
No 38
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=1.6e-44 Score=356.14 Aligned_cols=239 Identities=24% Similarity=0.370 Sum_probs=207.0
Q ss_pred cccccH--HHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccch----hHHHHHHHHHhh
Q 042442 13 EHQSGQ--DVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPA----AKVLVELAELQD 86 (283)
Q Consensus 13 ~~~~g~--~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~----~~ll~~~~~~~~ 86 (283)
+..+|. ++|.+.+.+|+.+++++++||||+||+|||+++.|+++|||||+||+++|+++||+ ++|++++|++|+
T Consensus 58 ~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd 137 (600)
T PLN03167 58 ELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTN 137 (600)
T ss_pred eeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhh
Confidence 445667 69999999999999999999999999999999999999999999999999999996 999999999999
Q ss_pred hHcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc--CceE----EEe-cCCchhhhhh
Q 042442 87 REVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD--KHVL----EVG-GDNDFFANLG 158 (283)
Q Consensus 87 ~~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~--~~~L----~is-~~~~~~s~l~ 158 (283)
+++||||||++|||++||+++.+++++|+||..|++||++| +.+++.|++ ++.+ .+.| .++ .+++.|+++.
T Consensus 138 ~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~-~s~~v~d~~L~~vA~tS~~~~~~i~~li 216 (600)
T PLN03167 138 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKK-MSKEVEDSELADVAAVSAGNNYEVGNMI 216 (600)
T ss_pred hhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH-hcccCCHHHHHHHHHHhccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999 999999998 4776 2334 233 3456889884
Q ss_pred hhhhh----------ccCCCeeeE-EEEeceEeccccCCC-------CCcceecCCEEEEecccccccccccCeeEEEcC
Q 042442 159 INILK----------AHVKSAIDS-YLLNGYALNTGRAAQ-------GMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTN 220 (283)
Q Consensus 159 I~i~k----------~~Gg~~~ds-~li~G~v~~~~~~~~-------~m~~~~~~~kIli~~~~le~~k~~~~~~i~~~s 220 (283)
++.++ ..|++.+|+ ++++|++|++++.+| .|+++++||||+++++++ ++
T Consensus 217 aeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i-------------~~ 283 (600)
T PLN03167 217 AEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKI-------------TN 283 (600)
T ss_pred HHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEcccc-------------CC
Confidence 44332 246677776 999999999999998 578889999999999854 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHH------hcCCceEEEeec
Q 042442 221 PRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASL------SDFNFSHFVWLC 281 (283)
Q Consensus 221 ~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~------~~~~i~~~~~~~ 281 (283)
++++.++ ++++.+.|+++|+++++|++.++++|. . .++.+++|.+
T Consensus 284 ~~~l~~~---------------le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~-~~i~aVk~p~ 334 (600)
T PLN03167 284 ARDLIGI---------------LEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGS-LKIAALKAPG 334 (600)
T ss_pred HHHHHHH---------------HHHHHHhCcCEEEEcCCCCHHHHHHHHHhhcccc-ceEEEEEccc
Confidence 6665553 346677899999999999999999998 4 7899999875
No 39
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=2.9e-44 Score=351.92 Aligned_cols=241 Identities=19% Similarity=0.298 Sum_probs=208.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccc----cchhHHHHHHHHHhhh
Q 042442 12 GEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIE----HPAAKVLVELAELQDR 87 (283)
Q Consensus 12 ~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~----hP~~~ll~~~~~~~~~ 87 (283)
.....|.+++..|+.|+..+++++++||||+||+|||.++.|+++|||||+||+++|+++ ||.++|++++|++|++
T Consensus 4 ~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~ 83 (546)
T PRK14104 4 KEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSAD 83 (546)
T ss_pred ceecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcc
Confidence 345678899999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---CceE----EEe-cCCchhhhhh
Q 042442 88 EVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KHVL----EVG-GDNDFFANLG 158 (283)
Q Consensus 88 ~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~~L----~is-~~~~~~s~l~ 158 (283)
++||||||+++||++||+++.+++++|+||..|++||++| +.+++.|.+ ++++ .+.| .++ .++++++++.
T Consensus 84 e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~-~a~~v~~~~~l~~va~~s~~~d~~i~~lv 162 (546)
T PRK14104 84 AAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVK-NSKKVTSNDEIAQVGTISANGDAEIGKFL 162 (546)
T ss_pred cccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHH-hcccCCCHHHHHHHHHHHhcCchHHHHHH
Confidence 9999999999999999999999999999999999999999 999999998 4877 2223 223 4567899886
Q ss_pred hhhhhccC----------CCe-eeEEEEeceEeccccCCCCC-------cceecCCEEEEecccccccccccCeeEEEcC
Q 042442 159 INILKAHV----------KSA-IDSYLLNGYALNTGRAAQGM-------PLRVAPPRIACLDFNLQKTKIQLGVQVLVTN 220 (283)
Q Consensus 159 I~i~k~~G----------g~~-~ds~li~G~v~~~~~~~~~m-------~~~~~~~kIli~~~~le~~k~~~~~~i~~~s 220 (283)
++.+...| ++. +++++++|++|++++.+|+| +.++++|+|++++..++ +
T Consensus 163 ~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~-------------~ 229 (546)
T PRK14104 163 ADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLS-------------S 229 (546)
T ss_pred HHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhc-------------C
Confidence 55544332 234 48999999999999999977 56789999999984432 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHh-c----CCceEEEeec
Q 042442 221 PRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLS-D----FNFSHFVWLC 281 (283)
Q Consensus 221 ~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~-~----~~i~~~~~~~ 281 (283)
+++ +..+++++.+.|++||+++++|++.|++||.. + .+|.+++|.+
T Consensus 230 ~~~---------------i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~ 280 (546)
T PRK14104 230 LNE---------------LLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPG 280 (546)
T ss_pred HHH---------------HHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccC
Confidence 333 44578899999999999999999999999984 1 4789999876
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-41 Score=308.66 Aligned_cols=256 Identities=25% Similarity=0.429 Sum_probs=234.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcCCCchhHHH
Q 042442 19 DVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVI 98 (283)
Q Consensus 19 ~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt~vv 98 (283)
.+..-|++++.-+.+++++.+||.|..||++++.|++.+|.||.+.+++|.+.||.+-++..++.+|++..|||||++|+
T Consensus 17 aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDGttS~Vl 96 (520)
T KOG0359|consen 17 AALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDGTTSVVL 96 (520)
T ss_pred cceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCCcceEEE
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc--CceE-----------------------------E
Q 042442 99 VAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD--KHVL-----------------------------E 146 (283)
Q Consensus 99 La~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~--~~~L-----------------------------~ 146 (283)
|+++++++|..++..|+||..|.+||+.| +.++++|++ .+.+ ++.| .
T Consensus 97 ligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k-~~~~~~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~ 175 (520)
T KOG0359|consen 97 LIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEK-VSREVDRETLKDVARTSLRTKVHAELADVLTPIVVDSVLC 175 (520)
T ss_pred eeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhc-cccchhHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhhee
Confidence 99999999999999999999999999999 999999986 4554 2222 1
Q ss_pred EecCCchhhhhhhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccCeeEEEcCHHHHHH
Q 042442 147 VGGDNDFFANLGINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEK 226 (283)
Q Consensus 147 is~~~~~~s~l~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~~~i~~~s~~~l~~ 226 (283)
+....+++.--+++++++..++..|+.+++|+++|++..|+.||++++|++|+++|.+|||.|++.++.|-+++++|.+.
T Consensus 176 i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~ 255 (520)
T KOG0359|consen 176 IRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREV 255 (520)
T ss_pred eccCCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchhccchhHHHH
Confidence 22233445555899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCc----EEEEcCCCCHHHHHHHHhcCCceEEEee
Q 042442 227 ICQRFLHREADMVKERIEKLLKAGAN----VVLTTKGIDDMAQKASLSDFNFSHFVWL 280 (283)
Q Consensus 227 ~~~~~~~~E~~~i~~~v~~I~~~gv~----vv~~~~~I~d~al~~l~~~~~i~~~~~~ 280 (283)
+.. .|++++.+.+++|++.+-. ||++|+||||..++-|++ .||.++||-
T Consensus 256 L~~----~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~-~gIlaLRRA 308 (520)
T KOG0359|consen 256 LVL----AERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAK-SGILALRRA 308 (520)
T ss_pred HHH----HHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhh-cchHHHHHH
Confidence 999 9999999999999988754 789999999999999997 999998874
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.6e-30 Score=229.30 Aligned_cols=173 Identities=35% Similarity=0.523 Sum_probs=157.4
Q ss_pred ccCCCCCCc-----ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHH
Q 042442 3 ILSQTPDTR-----GEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKV 77 (283)
Q Consensus 3 ~~~~~~~~~-----~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~l 77 (283)
.+++|+++. ..+..|.++.+.|+.+.+++++++++|+||+|++|+++.+.|.+.+|||| .|+++++
T Consensus 7 ~~~~~~iiLrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakL 77 (400)
T KOG0357|consen 7 EFGRPFIILRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKL 77 (400)
T ss_pred hhcCceEEeeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHH
Confidence 356777744 44667889999999999999999999999999999999999999999999 7899999
Q ss_pred HHHHHHHhhhHcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhccccCceEEEecCCchhhh
Q 042442 78 LVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQDKHVLEVGGDNDFFAN 156 (283)
Q Consensus 78 l~~~~~~~~~~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~~~~L~is~~~~~~s~ 156 (283)
+...+..|+.++|||||.+++|++.+++++..++.+|+||..|.+||..+ +.+++.|.+. +. .|.
T Consensus 78 mv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i-~~------------~~e- 143 (400)
T KOG0357|consen 78 IVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEI-SD------------PFE- 143 (400)
T ss_pred HHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhh-cc------------ccc-
Confidence 99999999999999999999999999999999999999999999999999 9999999873 22 222
Q ss_pred hhhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccCeeEEEcCHHHHHHHHHHHHHHHH
Q 042442 157 LGINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREA 236 (283)
Q Consensus 157 l~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~ 236 (283)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 237 DMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 237 ~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+.++++++++.|+++++||||+||+|.|.|.. |+++|+||||
T Consensus 144 --f~emi~~vK~~ga~l~icqwgfddeanhll~~-n~lpavrwVG 185 (400)
T KOG0357|consen 144 --FEEMIQQIKETGANLAICQWGFDDEANHLLLQ-NNLPAVRWVG 185 (400)
T ss_pred --HHHHHHHHHhhCCcEEEEecccCchhhhHHhh-cCCCceeecC
Confidence 23378999999999999999999999999986 9999999998
No 42
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.2e-25 Score=208.54 Aligned_cols=236 Identities=18% Similarity=0.262 Sum_probs=192.0
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccch----hHHHHHHHHHhh
Q 042442 11 RGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPA----AKVLVELAELQD 86 (283)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~----~~ll~~~~~~~~ 86 (283)
-++..+|.+++...+.++..+++++..|+||+||+.++.+..|.|.|||||.|+.+++.+.+++ |+++++.+.+.+
T Consensus 16 ak~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN 95 (550)
T KOG0356|consen 16 AKDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTN 95 (550)
T ss_pred ccccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhcc
Confidence 4556788999999999999999999999999999999999999999999999999999999998 799999999999
Q ss_pred hHcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---CceE----EEec-CCchhhhh
Q 042442 87 REVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KHVL----EVGG-DNDFFANL 157 (283)
Q Consensus 87 ~~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~~L----~is~-~~~~~s~l 157 (283)
+..|||||++++|+.++.+++..-+.+|.+|..+.+|...+ +.+++.|+++ +++ .+.+ .+|+ ++..++++
T Consensus 96 ~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~-sk~Vtt~eeIaqVAtiSAngD~~ig~l 174 (550)
T KOG0356|consen 96 EEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKM-SKPVTTPEEIAQVATISANGDKEIGNL 174 (550)
T ss_pred CccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHhhhcCCcHHHHHH
Confidence 99999999999999999999999999999999999999999 9999999984 887 3444 4454 45567776
Q ss_pred hhhhhhccC----------CCe-eeEEEEeceEeccccCCCCCcc-------eecCCEEEEecccccccccccCeeEEEc
Q 042442 158 GINILKAHV----------KSA-IDSYLLNGYALNTGRAAQGMPL-------RVAPPRIACLDFNLQKTKIQLGVQVLVT 219 (283)
Q Consensus 158 ~I~i~k~~G----------g~~-~ds~li~G~v~~~~~~~~~m~~-------~~~~~kIli~~~~le~~k~~~~~~i~~~ 219 (283)
.-.+++..| .+. .+.++++||-||+++.+|||.+ ++++|++++.+.+++
T Consensus 175 i~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~------------- 241 (550)
T KOG0356|consen 175 ISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKIS------------- 241 (550)
T ss_pred HHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhh-------------
Confidence 444444333 333 4678999999999999999854 467888887776654
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceE
Q 042442 220 NPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSH 276 (283)
Q Consensus 220 s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~ 276 (283)
+++++-+..+ .-......+++....|+.+|+..|.- |+.-.
T Consensus 242 ~v~~ivp~LE---------------~A~~~~~PLliIAeDi~~eaL~tLIl-NkLk~ 282 (550)
T KOG0356|consen 242 SVQSIVPALE---------------LALAKRRPLLIIAEDIDGEALATLVL-NKLKG 282 (550)
T ss_pred HHHHHhHHHH---------------HhhhccCceEEEehhcchhHHHHHHh-hhhcc
Confidence 4455544333 22223345778888999999888775 55443
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.87 E-value=6.4e-22 Score=177.84 Aligned_cols=112 Identities=21% Similarity=0.298 Sum_probs=106.4
Q ss_pred hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHH
Q 042442 158 GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREAD 237 (283)
Q Consensus 158 ~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~ 237 (283)
+|+|.|++||++.||++++|+++++++.++.||++++||||++++|||++++++. ++++++++.+ +|++
T Consensus 49 ~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~Le~~~~~~-------~~~~~~~~~~----~E~~ 117 (261)
T cd03334 49 YVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLEYQRVEN-------KLLSLDPVIL----QEKE 117 (261)
T ss_pred ceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeeeeccccccC-------CHHHHHHHHH----HHHH
Confidence 5999999999999999999999999999999999999999999999999999873 5788888888 9999
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 238 MVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 238 ~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
++++++++|++.|+|||||+|+|++.|++||.+ +||++++||.
T Consensus 118 ~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k-~gI~~v~~v~ 160 (261)
T cd03334 118 YLKNLVSRIVALRPDVILVEKSVSRIAQDLLLE-AGITLVLNVK 160 (261)
T ss_pred HHHHHHHHHHhcCCCEEEECCccCHHHHHHHHH-CCCEEEEecC
Confidence 999999999999999999999999999999998 8999999986
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.43 E-value=2.2e-13 Score=118.41 Aligned_cols=78 Identities=31% Similarity=0.316 Sum_probs=75.0
Q ss_pred hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHH
Q 042442 158 GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREAD 237 (283)
Q Consensus 158 ~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~ 237 (283)
+|++++.+||+++||++++|++|++++.+++||++++||||+++++||++
T Consensus 45 ~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~~~n~~Ill~~~~le~------------------------------ 94 (209)
T cd03333 45 VIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRLENAKILLLDCPLEY------------------------------ 94 (209)
T ss_pred HEEEEEecCcChhhceeEeeEEEeccccCCCCCeEcCCCcEEEEeCCeeE------------------------------
Confidence 78999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 238 MVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 238 ~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
||+++++|++.|++||.+ +||++++|+.
T Consensus 95 ---------------vii~~~~I~~~al~~l~~-~~I~~v~~~~ 122 (209)
T cd03333 95 ---------------VVIAEKGIDDLALHYLAK-AGIMAVRRVK 122 (209)
T ss_pred ---------------EEEecCcccHHHHHHHHH-CCCEEEEeCC
Confidence 999999999999999997 9999999985
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=98.98 E-value=8.8e-10 Score=114.94 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=101.0
Q ss_pred hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHH
Q 042442 158 GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREAD 237 (283)
Q Consensus 158 ~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~ 237 (283)
+|+++++.||+..||++++|+++.+..++..|..+.++|||+++.++|+|++-..+ ...++.+.+ +|.+
T Consensus 363 YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~leyqrisn~-------lsS~etvlq----qE~e 431 (1598)
T KOG0230|consen 363 YVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEYQRISNQ-------LSSIETVLQ----QEKE 431 (1598)
T ss_pred ceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchhhhhhhcc-------ccchHHHHh----hHHH
Confidence 78999999999999999999999999999999999999999999999999876542 223555666 8899
Q ss_pred HHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 238 MVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 238 ~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+++..|.+|....+|++++.++|++.|++||.. .+|+.+-.++
T Consensus 432 ~lk~~varI~s~~p~vllVeksVS~~aqe~L~~-k~I~lvlnvK 474 (1598)
T KOG0230|consen 432 YLKKVVARIESLRPDVLLVEKSVSRIAQELLLD-KGISLVLNVK 474 (1598)
T ss_pred HHHHHHHHHHhcCCCeEEEechHHHHHHHHhhc-cCeEEEEecc
Confidence 999999999999999999999999999999997 9999887765
No 46
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=77.91 E-value=6.4 Score=28.83 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=30.8
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEe
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVW 279 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~ 279 (283)
..+.+.+.|+++|+|. +|.+.+...|.+ +||.++.+
T Consensus 45 ~~~~l~~~~v~~li~~-~iG~~~~~~L~~-~gI~v~~~ 80 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICG-GIGEGAFRALKE-AGIKVYQG 80 (94)
T ss_dssp HHHHHHHTTESEEEES-CSCHHHHHHHHH-TTSEEEES
T ss_pred HHHHHHHcCCCEEEEe-CCCHHHHHHHHH-CCCEEEEc
Confidence 3456677899999998 799999999987 99999986
No 47
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=74.39 E-value=8.7 Score=30.52 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=30.8
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEE
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFV 278 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~ 278 (283)
..+.+++.|+|+|+|+ .+.+-|..+|.. +||-++.
T Consensus 57 ~a~~l~~~gvdvvi~~-~iG~~a~~~l~~-~GIkv~~ 91 (121)
T COG1433 57 IAELLVDEGVDVVIAS-NIGPNAYNALKA-AGIKVYV 91 (121)
T ss_pred HHHHHHHcCCCEEEEC-ccCHHHHHHHHH-cCcEEEe
Confidence 5678999999999998 899999999986 9987765
No 48
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=69.63 E-value=11 Score=28.11 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=31.5
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEee
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWL 280 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~ 280 (283)
..+.|.+.|+++|+|. ++.+.+.+.|.+ .||.++.+.
T Consensus 55 ~~~~l~~~~v~~vi~~-~iG~~~~~~l~~-~gI~v~~~~ 91 (103)
T cd00851 55 AAEFLADEGVDVVIVG-GIGPRALNKLRN-AGIKVYKGA 91 (103)
T ss_pred HHHHHHHcCCCEEEeC-CCCcCHHHHHHH-CCCEEEEcC
Confidence 5566777999999997 799999999986 999998764
No 49
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=68.65 E-value=12 Score=27.79 Aligned_cols=38 Identities=18% Similarity=0.080 Sum_probs=31.9
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
..+.+...|+++|+|. ++.+.+...|.+ .||.++...+
T Consensus 53 ~~~~l~~~~v~~vi~~-~iG~~a~~~l~~-~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVG-GIGGPAAAKLEA-AGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEc-ccCccHHHHHHH-cCCEEEEcCC
Confidence 3456778999999999 699999999987 9999987654
No 50
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=55.95 E-value=34 Score=25.96 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=33.4
Q ss_pred HHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeecc
Q 042442 244 EKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLCL 282 (283)
Q Consensus 244 ~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~~ 282 (283)
+.+...++++|++....++.-.+-|.+..|+.+++|..+
T Consensus 51 ~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~~V~DRt~L 89 (95)
T PF13167_consen 51 ELIEELDADLVVFDNELSPSQQRNLEKALGVKVIDRTQL 89 (95)
T ss_pred HHHhhcCCCEEEECCCCCHHHHHHHHHHHCCeeeccccH
Confidence 344567999999999999999999999999999988653
No 51
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=51.41 E-value=35 Score=30.10 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=29.4
Q ss_pred HHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEE
Q 042442 241 ERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHF 277 (283)
Q Consensus 241 ~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~ 277 (283)
+..+.+.+.++.+||+....++...+.++++.|+.++
T Consensus 190 ~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv 226 (256)
T PF01297_consen 190 ELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKVV 226 (256)
T ss_dssp HHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEE
T ss_pred HHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEE
Confidence 3556889999999999999999999999999998764
No 52
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=50.10 E-value=40 Score=30.09 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=32.3
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEE
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFV 278 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~ 278 (283)
.++.+.+.++.+||+...+++...+.++++.|+.++.
T Consensus 209 l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ 245 (266)
T cd01018 209 LIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKVVT 245 (266)
T ss_pred HHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeEEE
Confidence 5567999999999999999999999999999987653
No 53
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=49.97 E-value=38 Score=30.49 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=32.8
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEE
Q 042442 240 KERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHF 277 (283)
Q Consensus 240 ~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~ 277 (283)
.+.++.+.+.|+.+||++..+++...+.++++.|+.++
T Consensus 210 ~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~ 247 (282)
T cd01017 210 AELVEFVKKSDVKYIFFEENASSKIAETLAKETGAKLL 247 (282)
T ss_pred HHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCcEE
Confidence 34567899999999999999999999999998988765
No 54
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=46.30 E-value=47 Score=25.06 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=25.0
Q ss_pred CCCcEEEEcCCCCHHHHHHHHhcCCceEEE
Q 042442 249 AGANVVLTTKGIDDMAQKASLSDFNFSHFV 278 (283)
Q Consensus 249 ~gv~vv~~~~~I~d~al~~l~~~~~i~~~~ 278 (283)
.|+++|+|. ++.+.+.+.|.+ .||.++.
T Consensus 64 ~~~~vvi~~-~iG~~a~~~L~~-~GI~v~~ 91 (106)
T cd00852 64 SDCDAVLCA-KIGDEPKEKLEE-AGIEVIE 91 (106)
T ss_pred cCCcEEeeh-hhCccHHHHHHH-CCCEEEE
Confidence 699999998 899999999986 9999884
No 55
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=44.76 E-value=65 Score=24.12 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=25.1
Q ss_pred CCCcEEEEcCCCCHHHHHHHHhcCCceEEE
Q 042442 249 AGANVVLTTKGIDDMAQKASLSDFNFSHFV 278 (283)
Q Consensus 249 ~gv~vv~~~~~I~d~al~~l~~~~~i~~~~ 278 (283)
.++++|+|. +|.+.+...|.+ .||.++.
T Consensus 60 ~~~~vvi~~-~iG~~a~~~L~~-~GI~v~~ 87 (102)
T cd00853 60 EDCAILYCA-AIGGPAAARLVR-AGIHPIK 87 (102)
T ss_pred CCCcEEEEh-hcChhHHHHHHH-cCCEEEE
Confidence 599999988 899999999987 9999985
No 56
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=42.51 E-value=65 Score=29.14 Aligned_cols=36 Identities=8% Similarity=-0.009 Sum_probs=31.5
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEE
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHF 277 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~ 277 (283)
.++.+.+.++.+||++...++...+.++++.|+.++
T Consensus 220 l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~ 255 (286)
T cd01019 220 IRKEIKEKGATCVFAEPQFHPKIAETLAEGTGAKVG 255 (286)
T ss_pred HHHHHHHcCCcEEEecCCCChHHHHHHHHhcCceEE
Confidence 556799999999999999999999999998887553
No 57
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=42.12 E-value=67 Score=29.54 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=33.3
Q ss_pred HHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEE
Q 042442 239 VKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHF 277 (283)
Q Consensus 239 i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~ 277 (283)
+.+.++.+++.++.+||++..+++...+.++++-|+.++
T Consensus 241 l~~l~~~ik~~~v~~If~e~~~~~~~~~~la~e~g~~v~ 279 (311)
T PRK09545 241 LHEIRTQLVEQKATCVFAEPQFRPAVIESVAKGTSVRMG 279 (311)
T ss_pred HHHHHHHHHHcCCCEEEecCCCChHHHHHHHHhcCCeEE
Confidence 344667899999999999999999999999998887653
No 58
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=38.08 E-value=60 Score=29.43 Aligned_cols=37 Identities=16% Similarity=0.068 Sum_probs=31.9
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEE
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFV 278 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~ 278 (283)
.++.+.+.|+.+||++...++...+.++++.|+.++.
T Consensus 218 l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~gv~v~~ 254 (287)
T cd01137 218 LIEQVKKEKVPAVFVESTVNDRLMKQVAKETGAKIGG 254 (287)
T ss_pred HHHHHHHhCCCEEEEeCCCChHHHHHHHHHhCCcccc
Confidence 5567889999999999999999999999999987543
No 59
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=36.00 E-value=54 Score=27.05 Aligned_cols=34 Identities=9% Similarity=0.166 Sum_probs=25.2
Q ss_pred HHHHHHCCCcEEEEcCCCCHH-HHHHHHhcCCceEE
Q 042442 243 IEKLLKAGANVVLTTKGIDDM-AQKASLSDFNFSHF 277 (283)
Q Consensus 243 v~~I~~~gv~vv~~~~~I~d~-al~~l~~~~~i~~~ 277 (283)
+++|.+.++||||......+. ..+.|.+ .||+++
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~-~gIpvv 96 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQ-LGIPVL 96 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHH-cCCCEE
Confidence 578999999999886555443 6677765 888664
No 60
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=35.63 E-value=58 Score=28.72 Aligned_cols=47 Identities=23% Similarity=0.281 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEcC-CCCHHHHHHHHhcCCceEEEeecc
Q 042442 235 EADMVKERIEKLLKAGANVVLTTK-GIDDMAQKASLSDFNFSHFVWLCL 282 (283)
Q Consensus 235 E~~~i~~~v~~I~~~gv~vv~~~~-~I~d~al~~l~~~~~i~~~~~~~~ 282 (283)
|+..+...-+.+.+.|+++|+-+. |.++. .+-|.+++||++++.|.+
T Consensus 159 ~~~l~~~~~~a~~edgAeaIiLGCAGms~l-a~~Lq~~~gvPVIDgv~A 206 (230)
T COG4126 159 EALLVIEAAEALKEDGAEAIILGCAGMSDL-ADQLQKAFGVPVIDGVAA 206 (230)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEcCccHHHH-HHHHHHHhCCCcccchHH
Confidence 334444556778999999888754 66666 577888899999988765
No 61
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=35.40 E-value=1.1e+02 Score=27.64 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHCCCcEEEEcCCC-CHHHHHHHHhcCCceEEEeecc
Q 042442 237 DMVKERIEKLLKAGANVVLTTKGI-DDMAQKASLSDFNFSHFVWLCL 282 (283)
Q Consensus 237 ~~i~~~v~~I~~~gv~vv~~~~~I-~d~al~~l~~~~~i~~~~~~~~ 282 (283)
+.++.-.+-+.+.|++.|=.+++- .-...+.|.+ +||+++.|+|+
T Consensus 95 ~av~nA~rl~ke~GadaVKlEGg~~~~~~i~~l~~-~GIPV~gHiGL 140 (261)
T PF02548_consen 95 QAVRNAGRLMKEAGADAVKLEGGAEIAETIKALVD-AGIPVMGHIGL 140 (261)
T ss_dssp HHHHHHHHHHHTTT-SEEEEEBSGGGHHHHHHHHH-TT--EEEEEES
T ss_pred HHHHHHHHHHHhcCCCEEEeccchhHHHHHHHHHH-CCCcEEEEecC
Confidence 344445556677999999998874 3345678887 99999999987
No 62
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=34.75 E-value=80 Score=28.52 Aligned_cols=47 Identities=17% Similarity=0.112 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEcCCCCH-HHHHHHHhcCCceEEEeecc
Q 042442 235 EADMVKERIEKLLKAGANVVLTTKGIDD-MAQKASLSDFNFSHFVWLCL 282 (283)
Q Consensus 235 E~~~i~~~v~~I~~~gv~vv~~~~~I~d-~al~~l~~~~~i~~~~~~~~ 282 (283)
.++.++.-.+-+.+.|++.|=+++|..- ....+|.+ +||+++.||||
T Consensus 92 ~~~a~~nA~r~~ke~gA~aVKlEGG~~~~~~i~~L~~-~gIPV~gHiGL 139 (268)
T COG0413 92 PEQALKNAARLMKEAGADAVKLEGGEEMAETIKRLTE-RGIPVMGHIGL 139 (268)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHH-cCCceEEEecC
Confidence 3455566667778899999999988321 12357776 99999999997
No 63
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=34.55 E-value=1.6e+02 Score=21.36 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHCCCc-EEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 234 READMVKERIEKLLKAGAN-VVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 234 ~E~~~i~~~v~~I~~~gv~-vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
.|...+.+.+..-...|++ +++...+-+|...+.|.+..++.++++..
T Consensus 2 ne~~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~~~v~i~~~~~ 50 (97)
T PF13704_consen 2 NEADYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRALPGVGIIRWVD 50 (97)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhCCCcEEEEeCC
Confidence 4677788888988899998 55555555566778888888888887753
No 64
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=33.63 E-value=96 Score=23.27 Aligned_cols=29 Identities=21% Similarity=0.515 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhhc-----CCCcchhhHhhHH
Q 042442 98 IVAAEMLKRANDLVRN-----KIHPTSIISGYRV 126 (283)
Q Consensus 98 vLa~~LL~~a~~li~~-----gi~p~~I~~g~~~ 126 (283)
++.|+|+++|.+.-+. .+.|.++.++|++
T Consensus 56 vFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~rr 89 (90)
T PF04719_consen 56 VFVGEIVEEARDVQEEWGETGPLQPDHLREAYRR 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHTT--SS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHh
Confidence 7889999999987764 5788888888875
No 65
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=33.57 E-value=1.9e+02 Score=23.95 Aligned_cols=55 Identities=11% Similarity=0.184 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCce
Q 042442 220 NPRELEKICQRFLHR-----EADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFS 275 (283)
Q Consensus 220 s~~~l~~~~~~~~~~-----E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~ 275 (283)
+.+++..+.+.|.++ -...+.+.++.+.+.|..+++++.+.+..+...+. +.|+.
T Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~-~lg~~ 127 (202)
T TIGR01490 68 LEEDVRAIVEEFVNQKIESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLAR-ILGID 127 (202)
T ss_pred CHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHH-HcCCc
Confidence 566776666655422 14456777788889999999999898887765554 46664
No 66
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=30.12 E-value=95 Score=25.50 Aligned_cols=34 Identities=9% Similarity=0.082 Sum_probs=20.6
Q ss_pred HHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEE
Q 042442 243 IEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHF 277 (283)
Q Consensus 243 v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~ 277 (283)
++.|.+..+||||......+...+.|.+ .||+++
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~-~gi~v~ 86 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKD-AGIPVV 86 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHH-cCCcEE
Confidence 4567777778777755444444456654 677543
No 67
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=29.06 E-value=1.4e+02 Score=29.45 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=41.7
Q ss_pred ecCCEEEEecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcC
Q 042442 193 VAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDF 272 (283)
Q Consensus 193 ~~~~kIli~~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~ 272 (283)
+.+++++|+|-|=. +=||++.+++ ...++++++.|..||+.+...++. .+...+
T Consensus 156 yr~a~iLILDEPTa-----------VLTP~E~~~l------------f~~l~~l~~~G~tIi~ITHKL~Ev-~~iaDr-- 209 (501)
T COG3845 156 YRGARLLILDEPTA-----------VLTPQEADEL------------FEILRRLAAEGKTIIFITHKLKEV-MAIADR-- 209 (501)
T ss_pred hcCCCEEEEcCCcc-----------cCCHHHHHHH------------HHHHHHHHHCCCEEEEEeccHHHH-HHhhCe--
Confidence 46999999998721 1245555544 447899999999999999888774 444433
Q ss_pred CceEEEe
Q 042442 273 NFSHFVW 279 (283)
Q Consensus 273 ~i~~~~~ 279 (283)
++++|+
T Consensus 210 -vTVLR~ 215 (501)
T COG3845 210 -VTVLRR 215 (501)
T ss_pred -eEEEeC
Confidence 555554
No 68
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=28.61 E-value=90 Score=27.94 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=24.8
Q ss_pred HHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEE
Q 042442 243 IEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHF 277 (283)
Q Consensus 243 v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~ 277 (283)
+++|.+..||+||+....++...+.|.+ .||+++
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~-~gi~v~ 117 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQ-LGVEAT 117 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHH-cCCcEE
Confidence 4677888888888877777666677765 777664
No 69
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=28.48 E-value=1.3e+02 Score=27.21 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=33.7
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEee
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWL 280 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~ 280 (283)
+|+|-+..|+.++++-....++|.+.-. +.||+.+..+
T Consensus 213 mV~Kaa~~Gipil~S~SAPT~Lai~~Ae-~~~iTLvgf~ 250 (266)
T COG1526 213 MVQKAAMAGIPILASVSAPTSLAIEAAE-RLGLTLVGFV 250 (266)
T ss_pred HHHHHHHhCCcEEEEcccchHHHHHHHH-HcCCEEEEEe
Confidence 7889999999999999999999997766 4999998765
No 70
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=28.30 E-value=1e+02 Score=23.26 Aligned_cols=34 Identities=6% Similarity=0.038 Sum_probs=21.4
Q ss_pred HHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEE
Q 042442 243 IEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHF 277 (283)
Q Consensus 243 v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~ 277 (283)
.+.+.+.++|+||..+...+...+-+.+ .++.++
T Consensus 54 ~E~l~~l~pDlvi~~~~~~~~~~~~l~~-~~i~~~ 87 (148)
T cd00636 54 LEKIAALKPDLIIANGSGLEAWLDKLSK-IAIPVV 87 (148)
T ss_pred HHHHhccCCCEEEEecccchhHHHHHHH-hCCCEE
Confidence 3566677888888877655544455554 655544
No 71
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=27.03 E-value=1.4e+02 Score=27.08 Aligned_cols=39 Identities=26% Similarity=0.219 Sum_probs=30.3
Q ss_pred HHHHHHHCCCcEEEEcCCC---CHHHHHHHHhcCCceEEEeec
Q 042442 242 RIEKLLKAGANVVLTTKGI---DDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I---~d~al~~l~~~~~i~~~~~~~ 281 (283)
.++-|++.|++|.+|..++ .|.+-..|++ .||.+|-|=|
T Consensus 59 L~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~-~Gi~V~A~~g 100 (268)
T PF05221_consen 59 LAETLKALGAEVRWTGSNPLSTQDDVAAALAE-EGIPVFAWKG 100 (268)
T ss_dssp HHHHHHHTTEEEEEEESSTTT--HHHHHHHHH-TTEEEEE-TT
T ss_pred HHHHHHHcCCeEEEecCCCcccchHHHHHhcc-CCceEEEeCC
Confidence 4678999999999998755 5666678986 8999999854
No 72
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=26.54 E-value=1.9e+02 Score=20.86 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=36.0
Q ss_pred CCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhh
Q 042442 41 PVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQD 86 (283)
Q Consensus 41 P~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~ 86 (283)
+-+...++.++.|-+.+..-|+.|.+.++=.+-+..+...++...+
T Consensus 13 ~v~~~~Vl~~p~~~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~~Y~ 58 (81)
T TIGR03859 13 RAQDCYVLLYPEGMVKLNDSAGEILELCDGKRSLAEIIQELAQRFP 58 (81)
T ss_pred cccCcEEEEcCCceeeeChHHHHHHHHccCCCcHHHHHHHHHHHcC
Confidence 3455678888888888999999999999988877777766666443
No 73
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=26.18 E-value=1.9e+02 Score=22.28 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=20.6
Q ss_pred HHHHHHHCCCcEEEEcCCC-CHHHHHHHHhcCCceEEE
Q 042442 242 RIEKLLKAGANVVLTTKGI-DDMAQKASLSDFNFSHFV 278 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I-~d~al~~l~~~~~i~~~~ 278 (283)
.++.+.+.|+.-++.+.+- ++.+.+++. ++|+.++.
T Consensus 71 ~v~~~~~~g~~~v~~~~g~~~~~~~~~a~-~~gi~vig 107 (116)
T PF13380_consen 71 IVDEAAALGVKAVWLQPGAESEELIEAAR-EAGIRVIG 107 (116)
T ss_dssp HHHHHHHHT-SEEEE-TTS--HHHHHHHH-HTT-EEEE
T ss_pred HHHHHHHcCCCEEEEEcchHHHHHHHHHH-HcCCEEEe
Confidence 4566777788866665554 555555555 59988774
No 74
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.80 E-value=1.6e+02 Score=26.19 Aligned_cols=40 Identities=3% Similarity=-0.056 Sum_probs=31.4
Q ss_pred HHHHHHHHHHCCCcEEEEcCCCCHHHHHH---HHhcCCceEEE
Q 042442 239 VKERIEKLLKAGANVVLTTKGIDDMAQKA---SLSDFNFSHFV 278 (283)
Q Consensus 239 i~~~v~~I~~~gv~vv~~~~~I~d~al~~---l~~~~~i~~~~ 278 (283)
+.+.++.+.+.++.+||++...++-..+. ++++.|+.++.
T Consensus 195 l~~l~~~ik~~~v~~if~e~~~~~k~~~~l~~la~~~~~~v~~ 237 (264)
T cd01020 195 IAAFQNAIKNRQIDALIVNPQQASSATTNITGLAKRSGVPVVE 237 (264)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCcHHHHHHHHHHHHcCCCEEe
Confidence 44466788899999999999998877663 47888988754
No 75
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=25.60 E-value=78 Score=25.02 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHCCCcEEEEcCCCC-HHHHHHHHhcCCceEEEe
Q 042442 236 ADMVKERIEKLLKAGANVVLTTKGID-DMAQKASLSDFNFSHFVW 279 (283)
Q Consensus 236 ~~~i~~~v~~I~~~gv~vv~~~~~I~-d~al~~l~~~~~i~~~~~ 279 (283)
.+.-++.++++.+.++-+++...+.. +..+-.+++++++++++-
T Consensus 67 ~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 67 EEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEE
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEc
Confidence 34445678899999988777766664 444445566799999863
No 76
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=25.39 E-value=1.1e+02 Score=27.58 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=28.9
Q ss_pred HHHHHHHHHHCCCcEEEEcCCC----CHHHHHHHHhcCCceEEE
Q 042442 239 VKERIEKLLKAGANVVLTTKGI----DDMAQKASLSDFNFSHFV 278 (283)
Q Consensus 239 i~~~v~~I~~~gv~vv~~~~~I----~d~al~~l~~~~~i~~~~ 278 (283)
+.+.++...+. +|+||+.+|+ ||...+-+++..|-.++.
T Consensus 50 I~~~l~~a~~r-~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~ 92 (255)
T COG1058 50 IVEALREASER-ADVVITTGGLGPTHDDLTAEAVAKALGRPLVL 92 (255)
T ss_pred HHHHHHHHHhC-CCEEEECCCcCCCccHhHHHHHHHHhCCCccc
Confidence 33456666666 9999999998 778778888777765543
No 77
>PF12979 DUF3863: Domain of Unknown Function with PDB structure (DUF3863); InterPro: IPR024334 This entry represents a functionally uncharacterised domain found in bacterial sequences. The structure of one of the sequences, A6LGL1 from SWISSPROT from Parabacteroides distasonis atcc 8503, has been determined.; PDB: 3LM3_A.
Probab=24.73 E-value=2.3e+02 Score=25.64 Aligned_cols=97 Identities=21% Similarity=0.229 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcCCCchhHHH
Q 042442 19 DVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVI 98 (283)
Q Consensus 19 ~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt~vv 98 (283)
|..-..+.++..+.+.+++ .-|.|+.+-=.+ +..|+=..|-.+=+++.+.....++||-.|.+-=
T Consensus 34 E~~wHtl~gVr~~reAfa~-~nP~grLTWgft--------------~nALed~~~nyr~IR~y~v~c~~k~GDevsyfPG 98 (351)
T PF12979_consen 34 ETSWHTLEGVRALREAFAS-NNPDGRLTWGFT--------------LNALEDGRPNYRQIRDYVVECQQKYGDEVSYFPG 98 (351)
T ss_dssp -GGG--HHHHHHHHHHHHT-T-TT---EEEE---------------HHHHH--SHHHHHHHHHHHHHHHHH--EEEE---
T ss_pred cchhhHHHHHHHHHHHHHh-cCCCceEEEeee--------------cchhhcCChhHHHHHHHHHHHHHHhCCceeeccc
Confidence 3334457888899888875 468887665433 5666666777788888888888899998887643
Q ss_pred HHHHH----------HHHHHHhh----hcCCCcchhhHhhHHH-HHH
Q 042442 99 VAAEM----------LKRANDLV----RNKIHPTSIISGYRVG-REA 130 (283)
Q Consensus 99 La~~L----------L~~a~~li----~~gi~p~~I~~g~~~a-~~~ 130 (283)
...+| +.+|.++| .+|.-|+.|+.||--| +.+
T Consensus 99 yFpamYlpR~rVnRemseAi~lis~~vg~gyRP~si~gGFLsA~Nl~ 145 (351)
T PF12979_consen 99 YFPAMYLPRERVNREMSEAIQLISKMVGNGYRPQSIMGGFLSADNLR 145 (351)
T ss_dssp S-HHHHS-HHHHHHHHHHHHHHHHHHH-TT---SEEE-SS--HHHHH
T ss_pred cchhhcCcHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhcchhhhh
Confidence 32222 23444444 5899999999999888 543
No 78
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=24.55 E-value=2.2e+02 Score=21.00 Aligned_cols=29 Identities=21% Similarity=0.512 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhhc-------CCCcchhhHhhHH
Q 042442 98 IVAAEMLKRANDLVRN-------KIHPTSIISGYRV 126 (283)
Q Consensus 98 vLa~~LL~~a~~li~~-------gi~p~~I~~g~~~ 126 (283)
++.|+|+++|.+.-++ .+.|..|.++|++
T Consensus 48 vFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~rr 83 (85)
T cd08048 48 VFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYRR 83 (85)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHHH
Confidence 6778888888877643 3678888888875
No 79
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=24.54 E-value=1.8e+02 Score=25.66 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=33.1
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEee
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWL 280 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~ 280 (283)
++.|.+..|+.+|++...-.+.|.+.-. +.||+.+..+
T Consensus 184 mv~Ka~~aGIpvlvS~sapT~lavelA~-~~giTLigf~ 221 (237)
T TIGR00129 184 MVQKAARCGVPIIASKSAPTDLAIEVAE-ESNITLIGFA 221 (237)
T ss_pred HHHHHHHcCCCEEEEcccchHHHHHHHH-HhCCEEEEEe
Confidence 6889999999999999999999987655 5999998754
No 80
>PF04471 Mrr_cat: Restriction endonuclease; InterPro: IPR007560 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. This entry represents Mrr, a type IV restriction endonuclease involved in the acceptance of modified foreign DNA, restricting both adenine- and cytosine-methylated DNA. Plasmids carrying HincII, HpaI, and TaqI R and M genes are severely restricted in Escherichia coli strains that are Mrr+ []. Mrr appears to be the final effector of the bacterial SOS response, which is not only a vital reply to DNA damage but also constitutes an essential mechanism for the generation of genetic variability that in turn fuels adaptation and resistance development in bacterial populations []. Mrr possesses a cleavage domain that is similar to that found in type II restriction enzymes, however it has an unusual glutamine residue at the central position of the (D/E)-(D/E)XK hallmark of the active site [].; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0009307 DNA restriction-modification system; PDB: 1Y88_A.
Probab=24.49 E-value=1.1e+02 Score=22.67 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCHHHHHHHHhcCCceEEEe
Q 042442 251 ANVVLTTKGIDDMAQKASLSDFNFSHFVW 279 (283)
Q Consensus 251 v~vv~~~~~I~d~al~~l~~~~~i~~~~~ 279 (283)
.-++++..++++.|.++..+.++|..+.+
T Consensus 80 ~~iivt~~~~t~~a~~~~~~~~~I~l~d~ 108 (115)
T PF04471_consen 80 KGIIVTSSGFTPEAKEFAEKFKNIELIDG 108 (115)
T ss_dssp EEEEE-SSEE-HHHHHHHH----------
T ss_pred EEEEEECCcCCHHHHHHHHhhcccccccc
Confidence 34888899999999999887467766554
No 81
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=24.34 E-value=1.5e+02 Score=22.92 Aligned_cols=28 Identities=7% Similarity=0.075 Sum_probs=24.9
Q ss_pred CCCcEEEEcCCCCHHHHHHHHhcCCceEEE
Q 042442 249 AGANVVLTTKGIDDMAQKASLSDFNFSHFV 278 (283)
Q Consensus 249 ~gv~vv~~~~~I~d~al~~l~~~~~i~~~~ 278 (283)
.|+++|+|. +|.+.|..-|.+ .||.+++
T Consensus 62 ~~c~vvi~~-~IG~~a~~~L~~-~gI~~~~ 89 (119)
T TIGR02663 62 KDCAILYCL-AIGGPAAAKVVA-AKIHPIK 89 (119)
T ss_pred CCCcEEEEh-hcCccHHHHHHH-cCCeeEe
Confidence 599999998 899999999986 9998886
No 82
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=24.00 E-value=2.7e+02 Score=21.55 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=40.3
Q ss_pred CeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCC-----CCHHHHHHHHhcCCceEEE
Q 042442 213 GVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKG-----IDDMAQKASLSDFNFSHFV 278 (283)
Q Consensus 213 ~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~-----I~d~al~~l~~~~~i~~~~ 278 (283)
.+++.++|.-.+.. ...+.+.+.++.+.+.|+--+....+ |.+...++..+ .+++.|.
T Consensus 42 ~gElvlttg~~~~~-------~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~-~~lPli~ 104 (123)
T PF07905_consen 42 GGELVLTTGYALRD-------DDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADE-LGLPLIE 104 (123)
T ss_pred CCeEEEECCcccCC-------CCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHH-cCCCEEE
Confidence 45666665433321 12335677889999999886666555 89999988886 9998874
No 83
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=23.12 E-value=2e+02 Score=25.86 Aligned_cols=38 Identities=11% Similarity=0.208 Sum_probs=33.1
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEee
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWL 280 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~ 280 (283)
++.|.+..|+.+|++...-.+.|.+.-. +.||+.+..+
T Consensus 213 mv~Ka~~aGipvivS~saPT~lAVelA~-~~giTLiGf~ 250 (263)
T PRK00724 213 MVQKAAMAGIPILVAVSAPTSLAVELAE-ELGLTLVGFA 250 (263)
T ss_pred HHHHHHHcCCcEEEEcccchHHHHHHHH-HhCCEEEEEe
Confidence 7889999999999999999999997655 5999998754
No 84
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=22.52 E-value=2.3e+02 Score=21.81 Aligned_cols=39 Identities=8% Similarity=0.046 Sum_probs=29.7
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHH---HHHHhcCCceEEEee
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQ---KASLSDFNFSHFVWL 280 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al---~~l~~~~~i~~~~~~ 280 (283)
..+.|..-.+.+||...+.++... +++.+.++|+++.|.
T Consensus 33 vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~ 74 (108)
T PTZ00106 33 TLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYA 74 (108)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeC
Confidence 446677778899999999998765 344566899998873
No 85
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=22.47 E-value=1.6e+02 Score=26.95 Aligned_cols=36 Identities=3% Similarity=0.142 Sum_probs=31.5
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCce
Q 042442 240 KERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFS 275 (283)
Q Consensus 240 ~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~ 275 (283)
.+.++.+.+.++.+||....++....+.++++.|+.
T Consensus 231 ~~l~~~ik~~~i~~If~e~~~~~~~~~~la~e~g~~ 266 (303)
T COG0803 231 AKLVDLIKKKNIKAIFVESNVSSKSAETLAKETGVK 266 (303)
T ss_pred HHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCc
Confidence 346678999999999999999999999999998844
No 86
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=22.27 E-value=1.1e+02 Score=30.29 Aligned_cols=47 Identities=17% Similarity=0.326 Sum_probs=37.4
Q ss_pred cCCEEEEecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHH
Q 042442 194 APPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDM 263 (283)
Q Consensus 194 ~~~kIli~~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~ 263 (283)
.++|++|+|-|=.. +.. .|.+.+.+.++++.+.|+.+|+.+...++.
T Consensus 162 ~~arllIlDEPTaa-------------------Lt~----~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei 208 (500)
T COG1129 162 FDARVLILDEPTAA-------------------LTV----KETERLFDLIRRLKAQGVAIIYISHRLDEV 208 (500)
T ss_pred cCCCEEEEcCCccc-------------------CCH----HHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 48999999977221 222 788888889999999999999999776664
No 87
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=21.99 E-value=2.7e+02 Score=23.29 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=25.9
Q ss_pred HHHHHHHCCCc--EEEEcCCC------CHHHHHHHHhcCCceEEEee
Q 042442 242 RIEKLLKAGAN--VVLTTKGI------DDMAQKASLSDFNFSHFVWL 280 (283)
Q Consensus 242 ~v~~I~~~gv~--vv~~~~~I------~d~al~~l~~~~~i~~~~~~ 280 (283)
+.+++.+.+.. |++++.+- +..-.+.+.+..||++++|-
T Consensus 67 ~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~ 113 (168)
T PF09419_consen 67 WLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHR 113 (168)
T ss_pred HHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeC
Confidence 45666666654 66665553 34445678888999999874
No 88
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=20.82 E-value=1.6e+02 Score=25.69 Aligned_cols=37 Identities=16% Similarity=0.396 Sum_probs=29.3
Q ss_pred HHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceE
Q 042442 239 VKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSH 276 (283)
Q Consensus 239 i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~ 276 (283)
+++.|.++.+.|+.|.+.++|+..++. |.+..-||+.
T Consensus 93 i~eLv~~L~~~~~~v~liSGGF~~~i~-~Va~~Lgi~~ 129 (227)
T KOG1615|consen 93 IRELVSRLHARGTQVYLISGGFRQLIE-PVAEQLGIPK 129 (227)
T ss_pred HHHHHHHHHHcCCeEEEEcCChHHHHH-HHHHHhCCcH
Confidence 456889999999999999999999874 5555566543
No 89
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=20.74 E-value=1.6e+02 Score=25.82 Aligned_cols=38 Identities=13% Similarity=0.249 Sum_probs=28.8
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEee
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWL 280 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~ 280 (283)
++.|....|+.+|++...-.+.+.+.-. +.||+.+..+
T Consensus 184 mv~Ka~~aGipvivS~sapT~~av~~A~-~~gitLigf~ 221 (236)
T PF02634_consen 184 MVQKAARAGIPVIVSRSAPTSLAVELAR-KLGITLIGFA 221 (236)
T ss_dssp HHHHHHHHT-SEEEESS-B-HHHHHHHH-HHT-EEEEEE
T ss_pred HHHHHHHcCCCEEEEcccccHHHHHHHH-HhCCEEEEEe
Confidence 6888999999999999999999986554 5999988654
No 90
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=20.48 E-value=2e+02 Score=24.02 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=36.0
Q ss_pred ecCCEEEEecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHH
Q 042442 193 VAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASL 269 (283)
Q Consensus 193 ~~~~kIli~~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~ 269 (283)
+.+|+++++|-|...-. . ..++.+.+.++++.+.|..+|++....++...+++.
T Consensus 127 ~~~p~illlDEP~~~LD----------------~-------~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d 180 (194)
T cd03213 127 VSNPSLLFLDEPTSGLD----------------S-------SSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFD 180 (194)
T ss_pred HcCCCEEEEeCCCcCCC----------------H-------HHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcC
Confidence 46999999998865311 1 233455556777776788899998887654444443
No 91
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.02 E-value=1.7e+02 Score=26.18 Aligned_cols=34 Identities=6% Similarity=0.226 Sum_probs=28.1
Q ss_pred HHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcC
Q 042442 239 VKERIEKLLKAGANVVLTTKGIDDMAQKASLSDF 272 (283)
Q Consensus 239 i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~ 272 (283)
+.+.++.+.+.++.+||++..+++-..+.+.++.
T Consensus 199 l~~l~~~ik~~~v~~if~e~~~~~~~~~~l~~~~ 232 (276)
T cd01016 199 INELVDLIVERKIKAIFVESSVNQKSIEALQDAV 232 (276)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHH
Confidence 3446678999999999999999998888886643
Done!