Query 042442
Match_columns 283
No_of_seqs 136 out of 1611
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 10:28:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyg_G T-complex protein 1 sub 100.0 1.9E-63 6.6E-68 484.0 25.1 265 11-281 1-304 (515)
2 3iyg_A T-complex protein 1 sub 100.0 1.2E-62 4.2E-67 479.7 26.1 266 11-281 2-306 (529)
3 3iyg_H T-complex protein 1 sub 100.0 2.4E-62 8.2E-67 476.0 25.0 266 10-281 2-306 (515)
4 3ruv_A Chaperonin, CPN; double 100.0 1.9E-62 6.4E-67 479.5 23.9 271 5-281 3-310 (543)
5 3ko1_A Chaperonin; 9-fold symm 100.0 7.5E-63 2.6E-67 482.7 20.8 271 5-281 13-324 (553)
6 1q3q_A Thermosome alpha subuni 100.0 2.6E-62 8.8E-67 479.0 23.8 272 4-281 5-317 (548)
7 3p9d_D T-complex protein 1 sub 100.0 3.8E-62 1.3E-66 475.9 24.4 268 8-281 8-317 (528)
8 1a6d_B Thermosome (beta subuni 100.0 1E-62 3.4E-67 481.6 19.2 273 3-281 2-315 (543)
9 3iyg_B T-complex protein 1 sub 100.0 1.2E-61 4.3E-66 471.0 26.2 265 11-282 2-304 (513)
10 3iyg_E T-complex protein 1 sub 100.0 1.2E-61 4E-66 471.6 24.8 264 12-281 3-304 (515)
11 3iyg_Z T-complex protein 1 sub 100.0 1.9E-61 6.6E-66 469.9 24.8 264 12-281 3-309 (517)
12 3p9d_G T-complex protein 1 sub 100.0 8.9E-62 3E-66 475.1 21.3 267 10-282 15-320 (550)
13 1a6d_A Thermosome (alpha subun 100.0 1.5E-61 5.2E-66 473.2 20.8 266 10-281 13-314 (545)
14 3iyg_D T-complex protein 1 sub 100.0 7E-61 2.4E-65 466.2 24.9 264 11-281 3-308 (518)
15 3p9d_A T-complex protein 1 sub 100.0 1.8E-61 6.2E-66 473.8 19.4 269 8-281 13-322 (559)
16 3p9d_E T-complex protein 1 sub 100.0 2.8E-61 9.5E-66 472.7 19.6 273 4-282 25-348 (562)
17 3p9d_C T-complex protein 1 sub 100.0 7.1E-62 2.4E-66 477.8 14.7 271 5-281 2-321 (590)
18 3iyg_Q T-complex protein 1 sub 100.0 5.4E-60 1.8E-64 459.6 26.3 264 10-281 1-301 (512)
19 3p9d_F T-complex protein 1 sub 100.0 6.6E-61 2.2E-65 469.1 17.2 266 10-281 8-321 (546)
20 3p9d_H T-complex protein 1 sub 100.0 6.5E-60 2.2E-64 463.5 23.1 264 10-281 16-325 (568)
21 3p9d_B T-complex protein 1 sub 100.0 8.7E-60 3E-64 459.6 17.4 265 10-281 8-310 (527)
22 1we3_A CPN60(groel); chaperoni 100.0 1.7E-49 5.8E-54 387.4 21.9 238 12-278 3-275 (543)
23 3aq1_B Thermosome subunit; gro 100.0 2.8E-51 9.6E-56 397.2 8.6 229 47-281 1-268 (500)
24 1kp8_A Groel protein; chaperon 100.0 1.2E-49 4.1E-54 388.3 18.6 238 12-278 3-276 (547)
25 1iok_A Chaperonin 60; chaperon 100.0 7.9E-50 2.7E-54 389.7 15.5 238 12-278 4-277 (545)
26 3rtk_A 60 kDa chaperonin 2; he 100.0 6.3E-50 2.1E-54 389.7 11.0 240 12-280 3-277 (546)
27 1gml_A T-complex protein 1 sub 99.9 1.6E-25 5.3E-30 189.2 10.4 108 169-281 1-108 (178)
28 1ass_A Thermosome; chaperonin, 99.9 2.2E-24 7.6E-29 178.9 7.7 102 175-281 1-102 (159)
29 3m6c_A 60 kDa chaperonin 1; ch 97.6 3.5E-05 1.2E-09 64.5 4.3 70 172-269 2-78 (194)
30 1srv_A Protein (groel (HSP60 c 97.4 0.00026 8.8E-09 56.6 5.8 65 177-269 1-72 (145)
31 3osx_A 60 kDa chaperonin; alph 97.3 0.0004 1.4E-08 58.3 6.0 67 175-269 12-85 (201)
32 2yx6_A Hypothetical protein PH 70.4 6.2 0.00021 29.6 4.9 37 241-279 54-90 (121)
33 1o13_A Probable NIFB protein; 69.8 6.4 0.00022 30.5 4.9 37 242-280 68-104 (136)
34 1eo1_A Hypothetical protein MT 67.4 8.5 0.00029 29.0 5.1 37 242-280 57-93 (124)
35 2wfb_A Putative uncharacterize 64.9 6.7 0.00023 29.3 4.0 37 242-280 59-95 (120)
36 2re2_A Uncharacterized protein 63.2 13 0.00045 28.6 5.5 36 242-280 71-106 (136)
37 1rdu_A Conserved hypothetical 51.2 8.8 0.0003 28.4 2.5 36 242-279 54-89 (116)
38 2qtd_A Uncharacterized protein 50.2 29 0.001 25.0 5.3 33 244-279 50-82 (105)
39 3gi1_A LBP, laminin-binding pr 48.8 32 0.0011 29.9 6.2 37 241-277 219-255 (286)
40 2prs_A High-affinity zinc upta 48.7 28 0.00096 30.1 5.8 37 242-278 215-251 (284)
41 3cx3_A Lipoprotein; zinc-bindi 43.0 29 0.00098 30.1 4.9 36 242-277 218-253 (284)
42 2o1e_A YCDH; alpha-beta protei 40.6 29 0.001 30.6 4.6 36 242-277 231-266 (312)
43 1pq4_A Periplasmic binding pro 39.9 29 0.00099 30.2 4.5 37 242-278 229-265 (291)
44 1xvl_A Mn transporter, MNTC pr 38.0 44 0.0015 29.5 5.4 36 242-277 245-280 (321)
45 3hh8_A Metal ABC transporter s 37.9 28 0.00094 30.4 4.0 36 242-277 224-259 (294)
46 1toa_A Tromp-1, protein (perip 36.9 60 0.002 28.5 6.1 36 242-277 238-278 (313)
47 3ujp_A Mn transporter subunit; 30.4 50 0.0017 29.0 4.5 36 242-277 231-266 (307)
48 1p90_A NAFY protein, hypotheti 28.7 63 0.0022 25.0 4.3 29 249-279 66-94 (145)
49 3ff4_A Uncharacterized protein 28.6 54 0.0018 24.7 3.8 36 242-278 74-110 (122)
50 3psh_A Protein HI_1472; substr 25.3 85 0.0029 27.1 5.0 35 243-278 77-111 (326)
51 1gtz_A 3-dehydroquinate dehydr 23.8 1.6E+02 0.0053 23.4 5.7 63 190-269 1-67 (156)
52 2r7a_A Bacterial heme binding 22.8 1.1E+02 0.0037 25.2 5.1 34 243-277 52-86 (256)
53 3mfq_A TROA, high-affinity zin 22.2 81 0.0028 27.1 4.2 36 242-277 204-242 (282)
54 3md9_A Hemin-binding periplasm 22.1 1.1E+02 0.0039 25.0 5.1 35 243-278 52-87 (255)
55 1n2z_A Vitamin B12 transport p 21.4 1E+02 0.0034 25.3 4.5 34 243-277 50-84 (245)
56 2pw9_A Putative formate dehydr 20.6 1.2E+02 0.0042 26.1 5.0 38 242-280 207-244 (268)
57 2d59_A Hypothetical protein PH 20.3 1.6E+02 0.0055 22.3 5.2 36 242-278 93-129 (144)
No 1
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.9e-63 Score=483.96 Aligned_cols=265 Identities=30% Similarity=0.484 Sum_probs=244.9
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcC
Q 042442 11 RGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVG 90 (283)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (283)
++++.+|.+++..|+.||+.+++++||||||+||+|||+++.|+++|||||+|||++|+++||+|||++++|++||+++|
T Consensus 1 ~~~~~~g~~~~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~G 80 (515)
T 3iyg_G 1 NTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVG 80 (515)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEECCHHHHHHhcccCCHHHHHHHHHHHHhhhhhC
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE-----------EEecCCch
Q 042442 91 DGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL-----------EVGGDNDF 153 (283)
Q Consensus 91 DGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L-----------~is~~~~~ 153 (283)
|||||++|||++||++|.+++++|+||+.|++||++| +.++++|++ ++.+ ++.| .++...++
T Consensus 81 DGTTtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~v~~~~~~~l~~va~tsl~sK~i~~~~~~ 159 (515)
T 3iyg_G 81 DGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKK-ISIPVDTSNRDTMLNIINSSITTKVISRWSSL 159 (515)
T ss_pred CChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hhcccCCCCHHHHHHHHHHHhcCCchhhHHHH
Confidence 9999999999999999999999999999999999999 999999998 5776 1233 12222223
Q ss_pred hhhh----------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccc
Q 042442 154 FANL----------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQ 211 (283)
Q Consensus 154 ~s~l----------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~ 211 (283)
++++ +|+|+|++||+++||++++|++|++++.|++||++++||||++++|||++++++
T Consensus 160 ~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e 239 (515)
T 3iyg_G 160 ACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGE 239 (515)
T ss_pred HHHHHHHHHHhcccccCCCcccchhheeEEEEecCCCcccceEEeeEEEeCCCCCCCCcceeeeeEEEEEcccccccccc
Confidence 3322 267778889999999999999999999999999999999999999999999999
Q ss_pred cCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 212 LGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 212 ~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
.++++.++++++++++.+ +|++++++++++|++.|++||+|+++|+|++++||.+ +||++|+|+.
T Consensus 240 ~~~~v~is~~~~l~~~l~----~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~-~~I~av~~~~ 304 (515)
T 3iyg_G 240 SQTDIEITREEDFTRILQ----MEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMR-ANITAIRRVR 304 (515)
T ss_pred cCceEEeCCHHHHHHHHH----HHHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHH-CCceeeccCC
Confidence 999999999999999999 9999999999999999999999999999999999998 9999999985
No 2
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.2e-62 Score=479.66 Aligned_cols=266 Identities=59% Similarity=0.898 Sum_probs=248.0
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcC
Q 042442 11 RGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVG 90 (283)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (283)
++++.+|.+++..|+.||+.+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++|
T Consensus 2 ~~~~~~g~~a~~~ni~a~~~la~~v~ttlGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~e~G 81 (529)
T 3iyg_A 2 FGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVG 81 (529)
T ss_pred CcchhchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCChHHHHHHHHHHHhhhhhC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE-----------EEecCCch
Q 042442 91 DGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL-----------EVGGDNDF 153 (283)
Q Consensus 91 DGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L-----------~is~~~~~ 153 (283)
|||||++|||++||++|.+++++|+||+.|++||++| +.++++|++.++++ ++.| +++.++++
T Consensus 82 DGTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~l~~va~tsl~sK~~~~~~~~ 161 (529)
T 3iyg_A 82 DGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKVIGINGDF 161 (529)
T ss_pred CChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhccCcccccHHH
Confidence 9999999999999999999999999999999999999 99999998723665 2333 22335577
Q ss_pred hhhh----------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccc
Q 042442 154 FANL----------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQ 211 (283)
Q Consensus 154 ~s~l----------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~ 211 (283)
|+++ +|+|+++.|++++||++++|++|++++.|++||++++||||++++|||++++++
T Consensus 162 i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIlll~~~le~~k~e 241 (529)
T 3iyg_A 162 FANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMK 241 (529)
T ss_pred HHHHHHHHHHHHhhhccCCCcccccceEEEEEecCCCccceEEEeeeEEecCcccccCCcccCCceEEEecCCccccccc
Confidence 7766 156677889999999999999999999999999999999999999999999999
Q ss_pred cCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 212 LGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 212 ~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
.++++.++++++++.+.+ +|+++++.++++|++.|+|||+++++|+|+|++||.+ +||++++|+.
T Consensus 242 ~~~~v~i~~~~~~~~i~~----~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~-~gI~av~~v~ 306 (529)
T 3iyg_A 242 LGVQVVITDPEKLDQIRQ----RESDITKERIQKILATGANVILTTGGIDDMCLKYFVE-AGAMAVRRVL 306 (529)
T ss_pred CCceEEeCCHHHHHHHHH----HHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCceeccCC
Confidence 999999999999999999 9999999999999999999999999999999999998 9999999975
No 3
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=2.4e-62 Score=476.04 Aligned_cols=266 Identities=32% Similarity=0.472 Sum_probs=248.5
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHc
Q 042442 10 TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREV 89 (283)
Q Consensus 10 ~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~ 89 (283)
+++++.+|.+++..|+.||+.+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++
T Consensus 2 ~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~~ 81 (515)
T 3iyg_H 2 EGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEV 81 (515)
T ss_pred CCccccCcHHHHHHHHHHHHHHHHHHhhCcCCCCCeEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHHHHHHhhcee
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-C--------ceE-----------EEe
Q 042442 90 GDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-K--------HVL-----------EVG 148 (283)
Q Consensus 90 GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-~--------~~L-----------~is 148 (283)
||||||++|||++||++|.+++.+|+||+.|++||++| +.++++|++ ++++ . +.| .++
T Consensus 82 GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~-~a~~v~~~~~~~~~~~L~~va~tsl~sK~~s 160 (515)
T 3iyg_H 82 GDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKE-IAVTVKKEDKVEQRKLLEKCAMTALSSKLIS 160 (515)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hhcccccCChHHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999999999999 999999998 4765 1 112 234
Q ss_pred cCCchhhhh---------------hhhhhhccCCCeeeEEEEeceEeccccCCCCC---cceecCCEEEEeccccccccc
Q 042442 149 GDNDFFANL---------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGM---PLRVAPPRIACLDFNLQKTKI 210 (283)
Q Consensus 149 ~~~~~~s~l---------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m---~~~~~~~kIli~~~~le~~k~ 210 (283)
.++++|+++ .|+|+++.||+..||++++|++|++++.|++| |++++||||++++|||+++++
T Consensus 161 ~~~~~i~~livdAv~~V~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~p~~~~~p~~~en~kIll~~~~Le~~k~ 240 (515)
T 3iyg_H 161 QQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAE 240 (515)
T ss_pred ccHHHHHHHHHHHHHHhcccCCcceEEEEecCCCCccceEEEeeeEEecCccCcccccCCccccccEEEEEccccccccc
Confidence 566788887 35677888999999999999999999999976 789999999999999999999
Q ss_pred ccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 211 QLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 211 ~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+.++++.++++++++++.+ +|+++++.++++|++.|++||+|+++|+|.+++||++ +||++++|+.
T Consensus 241 e~~~~v~is~~~~l~~~~~----~E~~~l~~~le~I~~~g~~vvi~~~~I~dla~~~l~~-~gI~~v~~~~ 306 (515)
T 3iyg_H 241 KDNAEIRVHTVEDYQAIVD----AEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFAD-RDMFCAGRVP 306 (515)
T ss_pred ccCceEEeCCHHHHHHHHH----HHHHHHHHHHHHHHhcCCcEEEECCcccHHHHHHHHH-cCCccccccc
Confidence 9999999999999999999 9999999999999999999999999999999999986 9999999985
No 4
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=100.00 E-value=1.9e-62 Score=479.47 Aligned_cols=271 Identities=34% Similarity=0.554 Sum_probs=251.4
Q ss_pred CCCCC--CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHH
Q 042442 5 SQTPD--TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELA 82 (283)
Q Consensus 5 ~~~~~--~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~ 82 (283)
|||.. .++++.+|.+++..|+.||+.|++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|
T Consensus 3 ~~p~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a 82 (543)
T 3ruv_A 3 QQPGVLPENMKRYMGRDAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVA 82 (543)
T ss_dssp -CCCSSCSSEEEEETHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTSCEEEECCHHHHHHHSCCCCHHHHHHHHHH
T ss_pred CCCeeecCCcchhccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHH
Confidence 67833 4677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE-----------
Q 042442 83 ELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL----------- 145 (283)
Q Consensus 83 ~~~~~~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L----------- 145 (283)
++|++++||||||++|||++||++|.+++.+|+||+.|++||++| +.++++|++ ++++ ++.|
T Consensus 83 ~~qd~e~GDGTTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~v~~~d~~~L~~va~tsl~sK 161 (543)
T 3ruv_A 83 KTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKT-IACEVGAQDKEILTKIAMTSITGK 161 (543)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH-HCEECCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHhhhCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH-hhCCCCCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999 999999998 4765 2233
Q ss_pred EEecCCchhhhh------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccc
Q 042442 146 EVGGDNDFFANL------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQK 207 (283)
Q Consensus 146 ~is~~~~~~s~l------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~ 207 (283)
.++.++++|+++ +|+|++..|+++.||++++|++|++++.|++||++++||||++++|+|++
T Consensus 162 ~~~~~~~~i~~livdAv~~V~~~~g~~dl~~I~V~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~~n~kIll~~~~Le~ 241 (543)
T 3ruv_A 162 GAEKAKEKLAEIIVEAVSAVVDDEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIEI 241 (543)
T ss_dssp CGGGCCHHHHHHHHHHHHHHCCTTSCCCGGGEEEEEEECSCGGGCEEESSEEESCCCSCTTSCSEEEEEEEEEESSCBSC
T ss_pred ccchhHHHHHHHHHHHHHHhhccCCCcccceEEEEEcCCCCcccceeecceEEeccccCccccccccCcEEEEEcccccc
Confidence 223356778777 16667778999999999999999999999999999999999999999999
Q ss_pred cccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 208 TKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 208 ~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
++++.++++.++++++++++.+ +|+++++.++++|++.|+|||+++++|+++|++||.+ +||++++|+.
T Consensus 242 ~k~e~~~~v~Iss~~~l~~~~~----~E~~~l~~~ve~I~~~g~~vvi~~~~I~~~al~~L~~-~gI~~v~~v~ 310 (543)
T 3ruv_A 242 KETETDAEIRITDPAKLMEFIE----QEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAK-EGIVAARRVK 310 (543)
T ss_dssp CCCSSCCCEEECSTTHHHHHHH----HHHHHHHHHHHHHHHHTCSEEEESSCBCHHHHHHHHH-TTCEEECSCC
T ss_pred cccccCceeEeCCHHHHHHHHH----HHHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHH-cCcEEEeeCC
Confidence 9999999999999999999999 9999999999999999999999999999999999997 9999999985
No 5
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=100.00 E-value=7.5e-63 Score=482.74 Aligned_cols=271 Identities=35% Similarity=0.570 Sum_probs=243.5
Q ss_pred CCCCC---CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHH
Q 042442 5 SQTPD---TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVEL 81 (283)
Q Consensus 5 ~~~~~---~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~ 81 (283)
+||+. .++++.+|.+++..|+.||+.|++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++
T Consensus 13 ~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~ 92 (553)
T 3ko1_A 13 GIPVIILKEGSSRTYGKEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQI 92 (553)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEEECTTSCEEEECCHHHHHHSSCCCSHHHHHHHHH
T ss_pred CCeEEEEecCcccchhHHHHHHHHHHHHHHHHHHHhccCCcchhhHHHhhccceEEecCccchhhhhhccChhHHHHHHH
Confidence 47876 467788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE----------
Q 042442 82 AELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL---------- 145 (283)
Q Consensus 82 ~~~~~~~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L---------- 145 (283)
|++|++++||||||++|||++||++|.+++++|+||+.|++||++| +.++++|++ ++++ ++.|
T Consensus 93 a~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~v~~~d~e~L~~vA~tsl~s 171 (553)
T 3ko1_A 93 AKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQE-LAQTVSINDTDLLRKIAMTSLSS 171 (553)
T ss_dssp HHTCSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-TCEECCTTCHHHHHHHHHHHHTT
T ss_pred hhCCcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHH-hcCCCCCCcHHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999999 999999998 5765 2233
Q ss_pred -EEecCCchhhhh---------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecc
Q 042442 146 -EVGGDNDFFANL---------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDF 203 (283)
Q Consensus 146 -~is~~~~~~s~l---------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~ 203 (283)
.++.++++|+++ +|+|++..|+++.||++++|++|++++.|++||++++||||++++|
T Consensus 172 K~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~d~ 251 (553)
T 3ko1_A 172 KAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDA 251 (553)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGCEEESEEEECSCBSCTTSCSCCBSCEEEEECS
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccceeeEEEEecccccCCCCccccccceEEEecC
Confidence 122345677777 1667788899999999999999999999999999999999999999
Q ss_pred cccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 204 NLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 204 ~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+|++++++.++++.++++++++++.+ +|+++++.++++|++.|+|||+++++|+|+|++||.+ +||++++|+.
T Consensus 252 ~Le~~k~e~~~~v~Iss~~~l~~~~~----~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~-~gI~~v~~v~ 324 (553)
T 3ko1_A 252 SLEVEKPELDAEIRINDPTQMQKFLD----EEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAK-KGVLAVRRAK 324 (553)
T ss_dssp CBSCCCCTTTCCCCCCSHHHHHHHHH----HHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHH-HTCEEECCCC
T ss_pred cccccCcccCceEEeCCHHHHHHHHH----HHHHHHHHHHHHHHhhcceEEEeccChHHHHHHHHHh-cchhhhhhhh
Confidence 99999999999999999999999999 9999999999999999999999999999999999997 9999999985
No 6
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=100.00 E-value=2.6e-62 Score=478.97 Aligned_cols=272 Identities=32% Similarity=0.534 Sum_probs=248.8
Q ss_pred cCCCCC---CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHH
Q 042442 4 LSQTPD---TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVE 80 (283)
Q Consensus 4 ~~~~~~---~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~ 80 (283)
+++|+. .+++..+|.+++..|+.||+.+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+++++
T Consensus 5 ~~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e 84 (548)
T 1q3q_A 5 SGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVE 84 (548)
T ss_dssp ----CCCSCTTCEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHHHHHHHH
T ss_pred CCCCcccccCCcceechHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEcCCCCeEEECCHHHHHHHhhccchHHHHHHH
Confidence 346754 46788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE------E--
Q 042442 81 LAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL------E-- 146 (283)
Q Consensus 81 ~~~~~~~~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L------~-- 146 (283)
+|++|++++||||||++|||++||+++.+++.+|+||+.|++||++| +.++++|++ ++++ ++.| .
T Consensus 85 ~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~v~~~d~~~l~~va~tsl~ 163 (548)
T 1q3q_A 85 VAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDE-IAIRVDPDDEETLLKIAATSIT 163 (548)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH-HCEECCTTCHHHHHHHHHHHSC
T ss_pred HHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999 999999998 4775 2333 1
Q ss_pred --E-ecCCchhhhh---------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEec
Q 042442 147 --V-GGDNDFFANL---------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLD 202 (283)
Q Consensus 147 --i-s~~~~~~s~l---------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~ 202 (283)
+ +.++++|+++ .|+|+|+.|++++||++++|++|++++.|++||++++||||++++
T Consensus 164 sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~ 243 (548)
T 1q3q_A 164 GKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALIN 243 (548)
T ss_dssp SSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESSEEESCCCSSTTSCSEESSEEEEEEC
T ss_pred ccccccchHHHHHHHHHHHHHhccccCCCccccCCeEEEEEecCCCccceEEEeeEEEeccCCCCCCcceecCCEEEEEe
Confidence 1 2234566666 355666789999999999999999999999999999999999999
Q ss_pred ccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 203 FNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 203 ~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
|+|++++++.++++.++++++++.+.+ +|+++++.++++|++.|++||+++++|+|+|++||.+ +||++++|+.
T Consensus 244 ~~Le~~k~e~~~~v~i~~~~~l~~~~~----~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~-~~I~av~~~~ 317 (548)
T 1q3q_A 244 EALEVKKTETDAKINITSPDQLMSFLE----QEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAK-YGIMAVRRVK 317 (548)
T ss_dssp SCBSCCCCSSCCCEEECSHHHHHHHHH----HHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHH-TTCEEECSCC
T ss_pred cCcCcccccCCceEEeCCHHHHHHHHH----HHHHHHHHHHHHHHHhCcCEEEEcCCcCHHHHHHHHH-CCcEEEccCC
Confidence 999999999999999999999999999 9999999999999999999999999999999999998 9999999985
No 7
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=100.00 E-value=3.8e-62 Score=475.94 Aligned_cols=268 Identities=31% Similarity=0.481 Sum_probs=249.5
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhh
Q 042442 8 PDTRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDR 87 (283)
Q Consensus 8 ~~~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~ 87 (283)
...+.++.+|.+++..|+.||+.+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++
T Consensus 8 ~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~qd~ 87 (528)
T 3p9d_D 8 NATFKNKEKPQEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDS 87 (528)
T ss_dssp CCSSCBCCCHHHHHHHHHHHHHHHHHHHTTTSSTTCCCEEEECSSCCEEEECCHHHHHHHSCCCCTTHHHHHHHHHHHHH
T ss_pred ccccchhcchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEECCHHHHHHHcccCCHHHHHHHHHHHHhhh
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE-----------EEecC
Q 042442 88 EVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL-----------EVGGD 150 (283)
Q Consensus 88 ~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L-----------~is~~ 150 (283)
++||||||++|||++||++|.+++.+|+||+.|++||++| +.++++|++ ++++ ++.| .++.+
T Consensus 88 e~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~v~~~~~e~l~~va~tsl~sK~~~~~ 166 (528)
T 3p9d_D 88 EAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLE-MCHKVSLSDREQLVRAASTSLSSKIVSQY 166 (528)
T ss_dssp HTCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCSCCHHHHHHHHHHHSCSSSCSTT
T ss_pred hhCCChhhHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHH-hhCCCCCCCHHHHHHHHHHHhcCCccchh
Confidence 9999999999999999999999999999999999999999 999999998 5876 2333 12234
Q ss_pred Cchhhhh-------------------hhhhhhccCCCeeeEEEEeceEeccccCCCC-CcceecCCEEEEeccccccccc
Q 042442 151 NDFFANL-------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQG-MPLRVAPPRIACLDFNLQKTKI 210 (283)
Q Consensus 151 ~~~~s~l-------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~-m~~~~~~~kIli~~~~le~~k~ 210 (283)
+++|+++ .|+|+|++|++++||++++|++|++++.|++ ||++++||||++++|+|+++++
T Consensus 167 ~~~i~~livdAv~~V~~~~~~~i~v~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~~m~~~ien~kIll~~~~le~~k~ 246 (528)
T 3p9d_D 167 SSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKP 246 (528)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCCCGGGSBCCCCCSSCSCCCEEESSCBCCCCCCCSSSCCSEESSEEEEEECCCSSCCCC
T ss_pred HHHHHHHHHHHHHHhccccCCccceEEEEEEEecCCCccceEEEeeeEEeecccCcccCcccccCceEEEEecccccccc
Confidence 5666666 3566777799999999999999999999998 9999999999999999999999
Q ss_pred ccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCC-----CHHHHHHHHhcCCceEEEeec
Q 042442 211 QLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGI-----DDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 211 ~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I-----~d~al~~l~~~~~i~~~~~~~ 281 (283)
+.++++.++++++++.+.+ +|+++++.++++|++.|++||+++++| +++|++||.+ +||++++|+.
T Consensus 247 ~~~~~i~i~~~~~~~~~~~----~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~-~~I~av~~~~ 317 (528)
T 3p9d_D 247 DTENNIIVNDYRQMDKILK----EERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSK-LNIMVVKDIE 317 (528)
T ss_dssp SSEEEEEESSSSHHHHHTH----HHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTT-TSCCEEECCC
T ss_pred ccCceEEeCCHHHHHHHHH----HHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHH-cCcEEEEeCC
Confidence 9999999999999999999 999999999999999999999999999 9999999997 9999999986
No 8
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=100.00 E-value=1e-62 Score=481.61 Aligned_cols=273 Identities=37% Similarity=0.558 Sum_probs=242.0
Q ss_pred ccCCCCC---CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHH
Q 042442 3 ILSQTPD---TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLV 79 (283)
Q Consensus 3 ~~~~~~~---~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~ 79 (283)
++++|.. .+++..+|.+++..|+.||+.+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++
T Consensus 2 ~~~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~Akll~ 81 (543)
T 1a6d_B 2 IAGQPIFILKEGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMV 81 (543)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHH
T ss_pred CCCcchhhcCCcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHhhccchHHHHHH
Confidence 4567754 4677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE--------
Q 042442 80 ELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL-------- 145 (283)
Q Consensus 80 ~~~~~~~~~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L-------- 145 (283)
++|++|++++||||||++|||++||++|.+++.+|+||+.|++||++| +.++++|++ ++++ ++.|
T Consensus 82 e~a~~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~-~a~~v~~~~~~~l~~va~tsl 160 (543)
T 1a6d_B 82 EVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDE-ISTKIGADEKALLLKMAQTSL 160 (543)
T ss_dssp HHHTCTTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH-HCEECCTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999 999999998 4776 2333
Q ss_pred ---EEecCCchhhhh---------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEe
Q 042442 146 ---EVGGDNDFFANL---------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACL 201 (283)
Q Consensus 146 ---~is~~~~~~s~l---------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~ 201 (283)
+.+.++++|+++ +|+|+|+.|++++||++++|++|++++.|++||++++||||+++
T Consensus 161 ~sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~ 240 (543)
T 1a6d_B 161 NSKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALL 240 (543)
T ss_dssp TTSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEE
T ss_pred ccccccccHHHHHHHHHHHHHHhcccccCCcccccceEEEEEecCCCccceeEEccEEEecCCCCCCCcceecCCeEEEE
Confidence 112234666666 26667779999999999999999999999999999999999999
Q ss_pred cccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 202 DFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 202 ~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+|+|++++++.++++.++++++++.+.+ +|+++++.++++|++.|++||+++++|+++|++||.+ +||++++|+.
T Consensus 241 ~~~Le~~k~e~~~~v~i~~~~~l~~~~~----~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~-~~I~av~~v~ 315 (543)
T 1a6d_B 241 DAPLEIKKPEFDTNLRIEDPSMIQKFLA----QEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSR-AGIYAVRRVK 315 (543)
T ss_dssp SSCBSCCCCSSEEEECCCSTTHHHHHHH----HHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHH-TTCEEECSCC
T ss_pred ecccccccccCCceEEeCCHHHHHHHHH----HHHHHHHHHHHHHHHcCCCEEEECCCcCHHHHHHHHH-CCeeEeccCC
Confidence 9999999999999999999999999999 9999999999999999999999999999999999998 9999999985
No 9
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=100.00 E-value=1.2e-61 Score=471.02 Aligned_cols=265 Identities=32% Similarity=0.526 Sum_probs=247.7
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCC--CCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhH
Q 042442 11 RGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDI--GDVKITNDGATILKMLEIEHPAAKVLVELAELQDRE 88 (283)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~--g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~ 88 (283)
++++.+|.+++..|+.||+.+++++|+||||+||+|||+++. |+++|||||+|||++|+++||+|+|++++|++|+++
T Consensus 2 ~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~~G~~~iTnDG~tIlk~i~v~hp~Akll~e~a~~qd~e 81 (513)
T 3iyg_B 2 GADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDE 81 (513)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeecCCCCCCeEEECCHHHHHHHccccCHHHHHHHHHHHHhhhh
Confidence 467889999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-C-------ceE------EEe-----
Q 042442 89 VGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-K-------HVL------EVG----- 148 (283)
Q Consensus 89 ~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-~-------~~L------~is----- 148 (283)
+||||||++|||++||++|.+++.+|+||+.|++||++| +.++++|++ ++++ . +.| .++
T Consensus 82 ~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~v~~~~~~~~~~l~~va~tslssK~~~ 160 (513)
T 3iyg_B 82 VGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLN-SAVDHGSDEVKFRQDLMNIAGTTLSSKLLT 160 (513)
T ss_pred hCCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hCcCcccccccCHHHHHHHHHhhhcccccc
Confidence 999999999999999999999999999999999999999 999999998 5876 2 233 233
Q ss_pred cCCchhhhh---------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccc-c
Q 042442 149 GDNDFFANL---------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQ-L 212 (283)
Q Consensus 149 ~~~~~~s~l---------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~-~ 212 (283)
.++++|+++ .|+|+++.||+..||++++|++|++++.++ ||++++||||++++|||++++++ .
T Consensus 161 ~~~~~i~~livdAv~~V~~~~d~~~I~V~ki~gg~~~ds~lv~G~v~dk~~~~~-m~~~~en~kIll~~~~Le~~k~e~~ 239 (513)
T 3iyg_B 161 HHKDHFTKLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVN-QPKRIENAKILIANTGMDTDKIKIF 239 (513)
T ss_pred cchHHHHHHHHHHHHHhcccCCcCeEEEEEeCCCCccceeEEeeEEEeccccCC-CceeecCceEEEEcCCccccccccc
Confidence 356788887 356777789999999999999999999988 99999999999999999999999 8
Q ss_pred CeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeecc
Q 042442 213 GVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLCL 282 (283)
Q Consensus 213 ~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~~ 282 (283)
++++.+++++++.++.+ +|+++++.++++|++.|+|||+++++|+|+|++||.+ +||++++|++.
T Consensus 240 ~~~v~iss~~~l~~~~~----~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~-~~I~av~~~~~ 304 (513)
T 3iyg_B 240 GSRVRVDSTAKVAEIEH----AEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGA-AGVMAIEHADF 304 (513)
T ss_pred CCceEEcCHHHHHHHHH----HHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHH-cCceEEecCCH
Confidence 99999999999999999 9999999999999999999999999999999999997 99999999863
No 10
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.2e-61 Score=471.56 Aligned_cols=264 Identities=31% Similarity=0.475 Sum_probs=245.3
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcCC
Q 042442 12 GEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGD 91 (283)
Q Consensus 12 ~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (283)
+++.+|.+++..|+.||+.+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||
T Consensus 3 ~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~g~~~iTnDG~tIlk~i~~~hP~Akll~~~a~~qd~~~GD 82 (515)
T 3iyg_E 3 KSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD 82 (515)
T ss_pred chhhchHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEcCCCCeEEeCcHHHHHHHcccCCHHHHHHHHHHHHhhhhhCC
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-------CceE-----------EEecCCc
Q 042442 92 GTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-------KHVL-----------EVGGDND 152 (283)
Q Consensus 92 Gttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-------~~~L-----------~is~~~~ 152 (283)
||||++|||++||++|.+++.+|+||+.|++||++| +.++++|++ ++++ ++.| .++...+
T Consensus 83 GTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~v~~~~~~~~~l~~vA~tsl~sK~i~~~~~ 161 (515)
T 3iyg_E 83 GTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDK-ISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHR 161 (515)
T ss_pred chhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hceecCCCccCHHHHHHHHHHHhcccchhHHHH
Confidence 999999999999999999999999999999999999 999999998 4765 1333 1222334
Q ss_pred hhhhh-------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccC
Q 042442 153 FFANL-------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLG 213 (283)
Q Consensus 153 ~~s~l-------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~ 213 (283)
+|+++ +|+|++++||++.||++++|++|++++.|++||+++++|||++++||+++++++.+
T Consensus 162 ~l~~l~~dav~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lv~G~~~dk~~~~~~m~~~~~~~kIall~~~le~~k~~~~ 241 (515)
T 3iyg_E 162 QMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTK 241 (515)
T ss_pred HHHHHHHHHHHhhcccccCCCCcccEEEEEecCCCcccceEEeeEEEecccccccccccCCCceEEEEcCcccccccccc
Confidence 55555 35677788999999999999999999999999999999999999999999999999
Q ss_pred eeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 214 VQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 214 ~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+++.++++++++++.+ +|+++++.++++|++.|++||+++++|+++|++||.+ +||++++|++
T Consensus 242 ~~~~is~~~~l~~~~~----~E~~~l~~~lekI~~~g~~vvi~~~~I~~~al~~L~~-~~I~~v~~v~ 304 (515)
T 3iyg_E 242 HKLDVTSVEDFKALQK----YEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQ-NDLPAVRWVG 304 (515)
T ss_pred ceeeeCCHHHHHHHHH----HHHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHH-CCCEEEeccC
Confidence 9999999999999999 9999999999999999999999999999999999997 9999999986
No 11
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.9e-61 Score=469.90 Aligned_cols=264 Identities=26% Similarity=0.425 Sum_probs=244.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcCC
Q 042442 12 GEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGD 91 (283)
Q Consensus 12 ~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GD 91 (283)
.+...|.+++..|+.||+.+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||
T Consensus 3 ~~~~~~~~a~~~ni~a~~~la~~vkttlGPkG~~kml~~~~g~~~iTnDG~tIlk~i~v~hp~akll~~~a~~qd~e~GD 82 (517)
T 3iyg_Z 3 AEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGD 82 (517)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHhCC
Confidence 35668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc----CceE------E-----EecCCchhh
Q 042442 92 GTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD----KHVL------E-----VGGDNDFFA 155 (283)
Q Consensus 92 Gttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~----~~~L------~-----is~~~~~~s 155 (283)
||||++|||++||++|.+++.+|+||+.|++||++| +.+++.|++ ++++ ++.| . .+...++|+
T Consensus 83 GTTtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~v~~~~~~L~~va~tsl~sKi~~~~~d~la 161 (517)
T 3iyg_Z 83 GTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQ-VKVSKEMDRETLIDVARTSLRTKVHAELADVLT 161 (517)
T ss_pred CceeHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh-hCcCCCCCHHHHHHHHHHHhccccchhHHHHHH
Confidence 999999999999999999999999999999999999 999999998 5875 2333 1 112234555
Q ss_pred hh------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccCeeEE
Q 042442 156 NL------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVL 217 (283)
Q Consensus 156 ~l------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~~~i~ 217 (283)
++ +|+|+|++||+..||++++|++|++++.|++||++++||||++++|+|++++++.++++.
T Consensus 162 ~l~vdaV~~V~~~~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~m~~~ien~kIll~~~~le~~k~e~~~~~~ 241 (517)
T 3iyg_Z 162 EAVVDSILAIKKQDEPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFF 241 (517)
T ss_pred HHHHHHhheeccCCCcCChhHheeeeecCCCccccceEeeEEEeccCCCCCccccccCCeEEEecccccccccccceeEE
Confidence 54 577889999999999999999999999999999999999999999999999999999999
Q ss_pred EcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc---------EEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 218 VTNPRELEKICQRFLHREADMVKERIEKLLKAGAN---------VVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 218 ~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~---------vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
++++++++++.+ +|++++++++++|...|++ ||+|+++|+|+|++||.+ +||++++|+.
T Consensus 242 i~~~~~l~~~~~----~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~~L~~-~gI~~v~~v~ 309 (517)
T 3iyg_Z 242 YKSAEEREKLVK----AERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAK-EGIIALRRAK 309 (517)
T ss_pred eCCHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccCCHHHHHHHHH-CCCEEEEecC
Confidence 999999999999 9999999999999999988 499999999999999998 9999999985
No 12
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=100.00 E-value=8.9e-62 Score=475.13 Aligned_cols=267 Identities=31% Similarity=0.450 Sum_probs=247.8
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHc
Q 042442 10 TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREV 89 (283)
Q Consensus 10 ~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~ 89 (283)
.++++.+|.+++..|+.||+.|++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++
T Consensus 15 ~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll~e~a~~qd~e~ 94 (550)
T 3p9d_G 15 EGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDISRAQDAEV 94 (550)
T ss_dssp -CCCEEESHHHHHHHHHHHHHHHTTTGGGSTTTCCCEEEECSSSCEEEECCHHHHTTTSCCCSHHHHHHHHHHHHHHTTT
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHHHHHHhhhhh
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc--------CceE-----------EEec
Q 042442 90 GDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD--------KHVL-----------EVGG 149 (283)
Q Consensus 90 GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~--------~~~L-----------~is~ 149 (283)
||||||++|||++||++|.+++.+|+||+.|++||++| +.++++|++ ++++ ++.| .++.
T Consensus 95 GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~v~~~~~~~~~~L~~vA~tsl~sK~~~~ 173 (550)
T 3p9d_G 95 GDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINE-LAVDITSEKSSGRELLERCARTAMSSKLIHN 173 (550)
T ss_dssp SSCHHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHHHHHHHHHHHHH-SEECCCCC------CHHHHHHHHHHHTTTGG
T ss_pred CCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hcccCCCCcchhHHHHHHHHHHhccCccccc
Confidence 99999999999999999999999999999999999999 999999998 5766 1233 1234
Q ss_pred CCchhhhh----------------hhhhhhccCCCeeeEEEEeceEeccccCCC---CCcceecCCEEEEeccccccccc
Q 042442 150 DNDFFANL----------------GINILKAHVKSAIDSYLLNGYALNTGRAAQ---GMPLRVAPPRIACLDFNLQKTKI 210 (283)
Q Consensus 150 ~~~~~s~l----------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~---~m~~~~~~~kIli~~~~le~~k~ 210 (283)
++++|+++ +|+|+++.|++++||++++|++|++++.|+ .||++++||||++++|+|+++++
T Consensus 174 ~~~~i~~livdAv~~V~~~~~dl~~I~Vikv~Gg~~~ds~lv~G~~~dk~~~s~yf~~~~~~~en~kIll~~~~Le~~k~ 253 (550)
T 3p9d_G 174 NADFFVKMCVDAVLSLDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVELELKAE 253 (550)
T ss_dssp GHHHHHHHHHHHHHHCCSSSCCGGGCCCCBCCSSCGGGCCCCSSEEECCCSSCTTCSCSCSCCSSCCEEEECSCCSCCCC
T ss_pred cHhHHHHHHHHHHHHhCccccCchheeEEEecCCCccceeEEeeEEEeccccccccccCcccccCceEEEeccccccccc
Confidence 56778777 346778889999999999999999999988 57899999999999999999999
Q ss_pred ccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeecc
Q 042442 211 QLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLCL 282 (283)
Q Consensus 211 ~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~~ 282 (283)
+.++++.++++++++++.+ +|++++++++++|++.|++||+++++|+|.+++||++ +||++++|+.-
T Consensus 254 e~~~~v~is~~~~l~~il~----~E~~~l~~~v~~I~~~g~~vVi~~~~I~dla~~~L~~-~gI~~v~~v~k 320 (550)
T 3p9d_G 254 KDNAEVRVEHVEDYQAIVD----AEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFAD-RNIFCAGRVSA 320 (550)
T ss_dssp SSCEEEEECSSSHHHHHHH----HHHHHHHHHHHHHHTTTCSEEEESSCCCHHHHHTTGG-GTCEEEECCCT
T ss_pred cccceeeeCCHHHHHHHHH----HHHHHHHHHHHHHHhcCCCEEEECCCccHHHHHHHHH-cCCccccCcCH
Confidence 9999999999999999999 9999999999999999999999999999999999996 99999999863
No 13
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=100.00 E-value=1.5e-61 Score=473.25 Aligned_cols=266 Identities=36% Similarity=0.592 Sum_probs=245.2
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHc
Q 042442 10 TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREV 89 (283)
Q Consensus 10 ~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~ 89 (283)
.+++..+|.+++..|+.||+.+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|++++++|++|++++
T Consensus 13 ~~~~~~~g~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~ 92 (545)
T 1a6d_A 13 EGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAV 92 (545)
T ss_dssp ----CEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHHHHHHHGGGGCTTTCS
T ss_pred CcchhhchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCcHHHHHHhhhccchHHHHHHHHHHhcCCEE
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---CceE-----------EEecCCchh
Q 042442 90 GDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KHVL-----------EVGGDNDFF 154 (283)
Q Consensus 90 GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~~L-----------~is~~~~~~ 154 (283)
||||||++|||++||+++.+++++|+||+.|++||++| +.++++|++ ++++ ++.| +.+.++++|
T Consensus 93 GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~~~~~~~l~~va~tsl~sKi~~~~~~~i 171 (545)
T 1a6d_A 93 GDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDE-IAEKSTDDATLRKIALTALSGKNTGLSNDFL 171 (545)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH-HCEECCCHHHHHHHHHHHTTTSSCCSTHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHhcccccccHHHH
Confidence 99999999999999999999999999999999999999 999999998 4765 1223 122345667
Q ss_pred hhh---------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccC
Q 042442 155 ANL---------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLG 213 (283)
Q Consensus 155 s~l---------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~ 213 (283)
+++ .|+|+|+.|++++||++++|++|++++.|++||++++||||++++|+|++++++.+
T Consensus 172 ~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~ 251 (545)
T 1a6d_A 172 ADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIE 251 (545)
T ss_dssp HHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTCEEESEEEESCCCSCTTSCSEEEEEEEEEECSCBSCCCCSSC
T ss_pred HHHHHHHHHHHhcccCCCcccccceEEEEEecCCCceeeEEEeeEEEeccCCCCCCcceecCCEEEEEecCCCcccccCC
Confidence 766 35566778999999999999999999999999999999999999999999999999
Q ss_pred eeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 214 VQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 214 ~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+++.++++++++.+.+ +|+++++.++++|++.|++||+++++|+|+|++||.+ +||++++|+.
T Consensus 252 ~~v~i~~~~~l~~~~~----~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~-~~I~av~~~~ 314 (545)
T 1a6d_A 252 AKVQISDPSKIQDFLN----QETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAK-EGIYAVRRVK 314 (545)
T ss_dssp CEEEECSTTHHHHHHH----HHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHH-HTCEEECSCC
T ss_pred ceEEeCCHHHHHHHHH----HHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHH-CCeeEeccCC
Confidence 9999999999999999 9999999999999999999999999999999999998 9999999985
No 14
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=7e-61 Score=466.23 Aligned_cols=264 Identities=30% Similarity=0.470 Sum_probs=245.4
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcC
Q 042442 11 RGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVG 90 (283)
Q Consensus 11 ~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~G 90 (283)
+.++.+|.+++..|+.||+.+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++|
T Consensus 3 ~~~~~~g~~~~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~~~G 82 (518)
T 3iyg_D 3 YQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAG 82 (518)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhccCCCCCceeeeCCCCCeEEECCHHHHHHHcccchHHHHHHHHHHHHhhhhhC
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE-----------EEecCCch
Q 042442 91 DGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL-----------EVGGDNDF 153 (283)
Q Consensus 91 DGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L-----------~is~~~~~ 153 (283)
|||||++|||++||++|.+++.+|+||+.|++||++| +.++++|++ ++++ ++.| +++.+.++
T Consensus 83 DGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~v~~~~~~~l~~vA~tsl~sK~~~~~~~~ 161 (518)
T 3iyg_D 83 DGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTD-MSRPVELSDRETLLNSAATSLNSKVVSQYSSL 161 (518)
T ss_pred CCceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-heeeCCCCChHHHHHHhHhhhccccchhhHHH
Confidence 9999999999999999999999999999999999999 999999998 4776 2334 12233467
Q ss_pred hhhhh--------------------hhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccC
Q 042442 154 FANLG--------------------INILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLG 213 (283)
Q Consensus 154 ~s~l~--------------------I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~ 213 (283)
|+++. |+|+++.||+..||++++|++|++++.| +||++++||||++++|+|++++++.+
T Consensus 162 i~~livdAv~~V~~~~~~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~-~mp~~i~n~kIlll~~~Le~~k~~~~ 240 (518)
T 3iyg_D 162 LSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVAN-SGITRVEKAKIGLIQFCLSAPKTDMD 240 (518)
T ss_pred HHHHHHHHHHHhhccccCCCcccceEEEEEcCCCChhhheEeccEEEeccccc-CCCccccCceEEEEEeeccccccccC
Confidence 77761 5566668899999999999999999999 99999999999999999999999999
Q ss_pred eeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEE-----cCCCCHHHHHHHHhcCCceEEEeec
Q 042442 214 VQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLT-----TKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 214 ~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~-----~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+++.++++++++++.+ +|+++++.++++|++.|+|||++ +++|+++|++||.+ +||++++|++
T Consensus 241 ~~i~is~~~~~~~~~~----~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I~~~Al~~L~~-~~I~av~~~~ 308 (518)
T 3iyg_D 241 NQIVVSDYVQMDRVLR----EERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNK-MKIMVVKDIE 308 (518)
T ss_pred ceEEecCHHHHHHHHH----HHHHHHHHHHHHHHhcCCCEEEEeccccccCcCHHHHHHHHH-cCcEEEecCC
Confidence 9999999999999999 99999999999999999999999 89999999999997 9999999986
No 15
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=100.00 E-value=1.8e-61 Score=473.76 Aligned_cols=269 Identities=57% Similarity=0.843 Sum_probs=248.6
Q ss_pred CCCcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhh
Q 042442 8 PDTRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDR 87 (283)
Q Consensus 8 ~~~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~ 87 (283)
..+++++.+|.+++..|+.||+.|++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++
T Consensus 13 ~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~ 92 (559)
T 3p9d_A 13 LFLGGEKISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDR 92 (559)
T ss_dssp CCSSCEEEETHHHHHHHHHHHHHHHHHTTTTSSTTCCEEEECCSSSCCCEECCHHHHHHHHCCCSHHHHHHHHHHHHHHH
T ss_pred hhccccccchHHHHHHHHHHHHHHHHHHHhccCCCCCeeEeEcCCCCEEEECCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE-----------EEecC
Q 042442 88 EVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL-----------EVGGD 150 (283)
Q Consensus 88 ~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L-----------~is~~ 150 (283)
++||||||++|||++||++|.+++.+|+||+.|++||++| +.++++|++.++++ ++.| .++.+
T Consensus 93 e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~L~~vA~tsl~sK~~~~~ 172 (559)
T 3p9d_A 93 EIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTSMSSKIIGAD 172 (559)
T ss_dssp HTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCC--CTTHHHHHHHTTSSSGGGTT
T ss_pred HcCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhccCcccch
Confidence 9999999999999999999999999999999999999999 99999998822665 3344 12223
Q ss_pred Cchhhhhh----------------------hhhhhccCCCeeeEEEEeceEeccccCCCCCcceec--CCEEEEeccccc
Q 042442 151 NDFFANLG----------------------INILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVA--PPRIACLDFNLQ 206 (283)
Q Consensus 151 ~~~~s~l~----------------------I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~--~~kIli~~~~le 206 (283)
+++|+++. |+|++++|++++||++++|++|++++.|++||++++ ||||++++|+|+
T Consensus 173 ~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ie~~n~kIll~~~~Le 252 (559)
T 3p9d_A 173 SDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNLQ 252 (559)
T ss_dssp HHHHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSSCCBCCSEECCCCCCSSTTSCSEECSSSBCEEEETTCCS
T ss_pred hHHHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCccceeEeccEEEeecccCCCcceeeccCCceEEEEecccc
Confidence 46666662 555666688999999999999999999999999999 999999999999
Q ss_pred ccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 207 KTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 207 ~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+++++.++++.++++++++.+.+ +|+++++.++++|++.|++||+++++|+++|++||.+ +||++|+|+.
T Consensus 253 ~~k~e~~~~v~is~~~~l~~i~~----~E~~~l~~~le~I~~~g~~lvI~~~~I~~~al~~L~~-~~I~av~~~~ 322 (559)
T 3p9d_A 253 KARMAMGVQINIDDPEQLEQIRK----REAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVE-AKIMGVRRCK 322 (559)
T ss_dssp CCCCCTTCCEEECSSSCHHHHHH----HHHHHHHHHHHHHHTTCCSEEEESSCCCGGGTHHHHH-TTCEEESSCC
T ss_pred ccccccCceEEeCCHHHHHHHHH----HHHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHH-cCCceEccCC
Confidence 99999999999999999999999 9999999999999999999999999999999999998 9999999975
No 16
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*
Probab=100.00 E-value=2.8e-61 Score=472.70 Aligned_cols=273 Identities=34% Similarity=0.499 Sum_probs=244.3
Q ss_pred cCCCCCCcc-----cccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHH
Q 042442 4 LSQTPDTRG-----EHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVL 78 (283)
Q Consensus 4 ~~~~~~~~~-----~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll 78 (283)
+++|+.... ++.+|.+++..|+.||+.|++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|+
T Consensus 25 ~~~~~~~~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll 104 (562)
T 3p9d_E 25 MGRPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLL 104 (562)
T ss_dssp -----CCCSSBCCCSCSHHHHHHHHHHHHHHHHHHHTTTSSSTTCCEEEEECSSSCEEEESCHHHHHHHSCCCSHHHHHH
T ss_pred cCCCeEEeccCCcceecchHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCEEEECCHHHHHHHccCCCHHHHHH
Confidence 457754322 456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---C------ceE---
Q 042442 79 VELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---K------HVL--- 145 (283)
Q Consensus 79 ~~~~~~~~~~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~------~~L--- 145 (283)
+++|++|++++||||||++|||++||++|.+++.+|+||+.|++||++| +.++++|++ ++++ . +.|
T Consensus 105 ~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~v~~~~~~~~~e~L~~v 183 (562)
T 3p9d_E 105 VQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEE-TCDDISASNDELFRDFLLRA 183 (562)
T ss_dssp HHHHHHHHHHTSSCTTHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTT-TTSSSSBCCCSSCHHHHHHH
T ss_pred HHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hccCcCCCcchhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999998 4776 1 234
Q ss_pred --------EEecCCchhhhh-------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCccee-----
Q 042442 146 --------EVGGDNDFFANL-------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRV----- 193 (283)
Q Consensus 146 --------~is~~~~~~s~l-------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~----- 193 (283)
.++...++|+++ +|+|++++|++++||++++|++|++++.|++||++.
T Consensus 184 A~tSl~sK~i~~~~d~la~l~vdAV~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lveGmv~dk~~~sp~m~~~~~~~~~ 263 (562)
T 3p9d_E 184 AKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEG 263 (562)
T ss_dssp HHHHHSSSTTTTTHHHHHHHHHHHHHTSSTTTCSCCCCCCCEEEEESSSCGGGCEEESSEEESSCCCTTSCCC-----TT
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHheeecccccCCCCcccEEEEEecCCChhhhceeeeEEEecCCCCCCcCcccccccc
Confidence 122234556665 356777789999999999999999999999999999
Q ss_pred -cCCEEEEecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcC
Q 042442 194 -APPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDF 272 (283)
Q Consensus 194 -~~~kIli~~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~ 272 (283)
+++||++++||+++++++.++++.++++++++.+.+ +|+++++.++++|++.|++||+++++|+|+|++||.+ +
T Consensus 264 ~~~~kIall~~~le~~k~~~~~~~~Iss~~~~~~~~~----~E~~~l~~~lekI~~~g~~vvI~~~~I~~~Al~~L~~-~ 338 (562)
T 3p9d_E 264 SDGVKLAILTCPFEPPKPKTKHKLDISSVEEYQKLQT----YEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQ-N 338 (562)
T ss_dssp CSSCEECEEESCCSSCCCSSCCCCCCCSSSHHHHHHH----HHHHHHHHHHHHHHHHTCSCCEECSSCCSHHHHHHHT-T
T ss_pred cccceEEEecccccccccccCceEEECCHHHHHHHHH----HHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHH-C
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999997 9
Q ss_pred CceEEEeecc
Q 042442 273 NFSHFVWLCL 282 (283)
Q Consensus 273 ~i~~~~~~~~ 282 (283)
||++++|++-
T Consensus 339 ~I~~v~~v~k 348 (562)
T 3p9d_E 339 DLPAVRWVGG 348 (562)
T ss_dssp TCCCEECCCT
T ss_pred CCEEEeccCH
Confidence 9999999863
No 17
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B
Probab=100.00 E-value=7.1e-62 Score=477.80 Aligned_cols=271 Identities=28% Similarity=0.449 Sum_probs=248.1
Q ss_pred CCCCC---CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHH
Q 042442 5 SQTPD---TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVEL 81 (283)
Q Consensus 5 ~~~~~---~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~ 81 (283)
.+|+. .++++.+|.+++..|+.||+.+++++++||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++
T Consensus 2 ~~~~~~~~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~~~hP~Akll~e~ 81 (590)
T 3p9d_C 2 QAPVVFMNASQERTTGRQAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLEL 81 (590)
T ss_dssp ----CCSCTTCCBCTTHHHHHTTHHHHHHHHHHSTTTCSSSCCCCEEECTTTCCBCCCCHHHHHHHSCCCCHHHHTHHHH
T ss_pred CCCeEeecCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECCHHHHHHHhhCCCHHHHHHHHH
Confidence 34554 467889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHcCCCchhHHHHHHHHHHHHHHh-hhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-----CceE------EEe
Q 042442 82 AELQDREVGDGTTSVVIVAAEMLKRANDL-VRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-----KHVL------EVG 148 (283)
Q Consensus 82 ~~~~~~~~GDGttt~vvLa~~LL~~a~~l-i~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-----~~~L------~is 148 (283)
|++|++++||||||++|||++||++|.++ +.+|+||+.|++||++| +.++++|++ ++++ ++.| .++
T Consensus 82 a~~qd~e~GDGTTtvvVLA~eLL~~a~~l~l~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~v~~~~~e~L~~vA~tsls 160 (590)
T 3p9d_C 82 SRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQ-VSKPVDVENDAAMKKLIQASIG 160 (590)
T ss_dssp TTTHHHHCSSCHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHH-HCCTTTTCCTHHHHHHHTTTST
T ss_pred HHhhhhhhCCCccchHHHHHHHHhhhHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHH-HhhccccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 99999999999999999 999999998 4876 2334 122
Q ss_pred -----cCCchhhhh----------------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecC
Q 042442 149 -----GDNDFFANL----------------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAP 195 (283)
Q Consensus 149 -----~~~~~~s~l----------------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~ 195 (283)
.++++|+++ +|+|+|++||++.||++++|++|++++.++.||++++|
T Consensus 161 SK~~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~~I~I~ki~Ggs~~ds~lv~Gmvfdk~~~~~~m~~~~en 240 (590)
T 3p9d_C 161 TKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIEN 240 (590)
T ss_dssp TSTTGGGHHHHHHHHHHHHTTSTTCC-----------CCCSSSSCEEEESSCCGGGCBCCSSEEECCCCSCTTSCSCEES
T ss_pred cccccccHHHHHHHHHHHHHHhcccccCccccccccccchhhceEEEEecCCCcccceeeeEEEEecccCCCCCcceeee
Confidence 235666666 15567778999999999999999999999999999999
Q ss_pred CEEEEecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCce
Q 042442 196 PRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFS 275 (283)
Q Consensus 196 ~kIli~~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~ 275 (283)
|||++++|||++++++.++++.++++++++++.+ .|++++++++++|++.|++||||+++|+|+|++||.+ +||+
T Consensus 241 ~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~----~E~~~l~~~vekI~~~g~~vII~e~~I~d~Al~~L~k-~~I~ 315 (590)
T 3p9d_C 241 PRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQ----IEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLK-GGCS 315 (590)
T ss_dssp CCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHH----HHHHHHHHHHHHHHTTCCSEECCSSCCCTHHHHHHHH-TTCC
T ss_pred eEEEEEcccccccccccCceEEeCCHHHHHHHHH----HHHHHHHHHHHHHHhcCCcEEEecCCcCHHHHHHHHh-ccce
Confidence 9999999999999999999999999999999999 9999999999999999999999999999999999998 9999
Q ss_pred EEEeec
Q 042442 276 HFVWLC 281 (283)
Q Consensus 276 ~~~~~~ 281 (283)
+|+|+.
T Consensus 316 av~~~~ 321 (590)
T 3p9d_C 316 VLRRVK 321 (590)
T ss_dssp CCCCCC
T ss_pred eeccCC
Confidence 999975
No 18
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=5.4e-60 Score=459.59 Aligned_cols=264 Identities=27% Similarity=0.426 Sum_probs=243.7
Q ss_pred Cccccccc-HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhH
Q 042442 10 TRGEHQSG-QDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDRE 88 (283)
Q Consensus 10 ~~~~~~~g-~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~ 88 (283)
+++++++| ++++..|+.||+.+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|+++
T Consensus 1 ~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~ 80 (512)
T 3iyg_Q 1 EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQE 80 (512)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHHHHHhhhh
Confidence 46788999 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhccc----c---CceE------EEe----cC
Q 042442 89 VGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQ----D---KHVL------EVG----GD 150 (283)
Q Consensus 89 ~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~----~---~~~L------~is----~~ 150 (283)
+||||||++|||++||++|.+++.+|+||+.|++||++| +.++++|++ ++. + ++.| .++ ++
T Consensus 81 ~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~-~~~~~~~~~~~~~~l~~va~tsl~sK~~~~ 159 (512)
T 3iyg_Q 81 VGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPD-LVCCSAKNLRDVDEVSSLLHTSVMSKQYGN 159 (512)
T ss_pred hCCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hhcccCCCCCCHHHHHHHHHHHhCCCCccc
Confidence 999999999999999999999999999999999999999 999999998 443 3 2333 111 12
Q ss_pred Cchhhhh------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEeccccccccccc
Q 042442 151 NDFFANL------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQL 212 (283)
Q Consensus 151 ~~~~s~l------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~ 212 (283)
+++|+++ .|++.|.+|+++.||++++|++|++++.+ ||++.+||||++++||+++++++.
T Consensus 160 ~~~i~~livdAv~~V~~~~~~i~v~~I~i~k~~Ggs~~ds~lv~G~~~dk~~~~--~~~~~~n~kI~ll~~~le~~~~e~ 237 (512)
T 3iyg_Q 160 EVFLAKLIAQACVSIFPDSGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEG--DVTSVKDAKIAVYSCPFDGMITET 237 (512)
T ss_pred hHHHHHHHHHHHHHHhccCCcccHhHeeEeeccCCCcccceEEeeEEEecCcCC--CCcccccCceEEEecccccccccc
Confidence 4667766 35667788999999999999999999875 999999999999999999999999
Q ss_pred CeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 213 GVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 213 ~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
++++.+++++++.++.+ +|++++++++++|++.|++||+++++|++++++||.+ +||++++|++
T Consensus 238 k~~v~Is~~~~l~~~~~----~E~~~l~~~v~~I~~~g~~vvi~~~~I~~la~~~l~k-~~I~av~~~~ 301 (512)
T 3iyg_Q 238 KGTVLIKSAEELMNFSK----GEENLMDAQVKAIADTGANVVVTGGRVADMALHYANK-YNIMLVRLNS 301 (512)
T ss_pred cceEEeCCHHHHHHHHH----HHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHH-CCeEEEEeCC
Confidence 99999999999999999 9999999999999999999999999999999999997 9999999986
No 19
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=100.00 E-value=6.6e-61 Score=469.06 Aligned_cols=266 Identities=23% Similarity=0.419 Sum_probs=244.4
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHc
Q 042442 10 TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREV 89 (283)
Q Consensus 10 ~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~ 89 (283)
.++++..|.+++..|+.||+.|++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++
T Consensus 8 ~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~qd~e~ 87 (546)
T 3p9d_F 8 PKAESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQDEIT 87 (546)
T ss_dssp TTEEEEEHHHHHHHHHHHHTHHHHHHTTTSSTTCCEEEEECTTSCEEEECCHHHHHHTSCCCCHHHHHHHHHHHHHHHHC
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHh
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-------CceE----EEe-------cC
Q 042442 90 GDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-------KHVL----EVG-------GD 150 (283)
Q Consensus 90 GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-------~~~L----~is-------~~ 150 (283)
||||||++|||++||++|.+++.+|+||+.|++||++| +.++++|++ ++++ ++.| .++ ..
T Consensus 88 GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~-~a~~v~~~~~~~~~L~~vA~tsl~sKi~~~~ 166 (546)
T 3p9d_F 88 GDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDE-FKISKTNLSNDREFLLQVARSSLLTKVDADL 166 (546)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHH-HCCCCSSSSTTCHHHHHHHHHHTCSTTHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH-hhccccccccCHHHHHHHHHHHhCCCcchhH
Confidence 99999999999999999999999999999999999999 999999998 4765 2233 111 12
Q ss_pred Cchhhhh-------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccc
Q 042442 151 NDFFANL-------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQ 211 (283)
Q Consensus 151 ~~~~s~l-------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~ 211 (283)
.++|+++ +|+++|++||+..||++++|++|++++.|++||++++||||++++|||++++++
T Consensus 167 ~d~la~l~vdaV~~V~~~~~~~~dl~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~en~kIll~~~~Le~~k~e 246 (546)
T 3p9d_F 167 TEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTE 246 (546)
T ss_dssp CSSHHHHHHHHHHHTHHHHHTTCCGGGEEEECCCCSCTTTCCCCSSCEESCCCCSSSSCSSBCSCCCCEECCCSSSCCCS
T ss_pred HHHHHHHHHHhheEeecCCCCcccchheEEEEecCCCccccEEEeeEEEecccccccCcceecCceEEEecCcccccccc
Confidence 4555555 466778889999999999999999999999999999999999999999999999
Q ss_pred cCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 212 LGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAG----------ANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 212 ~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~g----------v~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
.++++.++++++++.+.+ +|++++++++++|...+ ++||+++++|+|+|++||.+ +||+++||+.
T Consensus 247 ~~~~~~i~~~~~~~~~~~----~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~Al~~L~~-~gI~~vr~v~ 321 (546)
T 3p9d_F 247 VNSGFFYSSADQRDKLAA----SERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAK-HNILALRRAK 321 (546)
T ss_dssp SCBCCCCCSSSCHHHHHH----HHHHHHHHHHHHHHHCC-----------CEEEESSCCCHHHHHHHTT-TTCEEECCCC
T ss_pred cCceEEEcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCcCcHHHHHHHHH-CCCeeEecCC
Confidence 999999999999999999 99999999999998865 34999999999999999998 9999999975
No 20
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=100.00 E-value=6.5e-60 Score=463.51 Aligned_cols=264 Identities=24% Similarity=0.391 Sum_probs=242.5
Q ss_pred Cccccccc-HHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhH
Q 042442 10 TRGEHQSG-QDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDRE 88 (283)
Q Consensus 10 ~~~~~~~g-~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~ 88 (283)
+++++++| ++++..|+.||+.|++++|+||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|+++
T Consensus 16 ~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll~e~a~~qd~e 95 (568)
T 3p9d_H 16 QGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATEQQKID 95 (568)
T ss_dssp SSCCBCCCHHHHHHHHHHHHHHHHHHHHTTSSSSSCEEEEECTTSCEEEESCHHHHTTTCCCCCHHHHHHHHHHHHHHTT
T ss_pred cCccccccHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHHHHhhhce
Confidence 57788888 47999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc-------CceE------EEe----cC
Q 042442 89 VGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD-------KHVL------EVG----GD 150 (283)
Q Consensus 89 ~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~-------~~~L------~is----~~ 150 (283)
+||||||++|||++||+++.+++.+|+||+.|++||++| +.++++|++ ++++ ++.| .++ ++
T Consensus 96 ~GDGTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~-~a~~v~~~~~~~~~l~~va~tsl~sK~~~~ 174 (568)
T 3p9d_H 96 MGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDE-MVVGEITDKNDKNELLKMIKPVISSKKYGS 174 (568)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH-HCCSCCCCCCTTHHHHHHHHHHHTTTSTTC
T ss_pred eCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hccccCCCCCCHHHHHHHHHHHhhccCcch
Confidence 999999999999999999999999999999999999999 999999998 4754 2333 111 22
Q ss_pred Cchhhhh------------------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceec---CCEEEEecc
Q 042442 151 NDFFANL------------------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVA---PPRIACLDF 203 (283)
Q Consensus 151 ~~~~s~l------------------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~---~~kIli~~~ 203 (283)
.++|+++ .|+|++++|++++||++++|++|++++. +||++++ ||||++++|
T Consensus 175 ~~~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS~lv~G~v~dk~~~--~m~~~i~~~~n~kIlll~~ 252 (568)
T 3p9d_H 175 EDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPE--GHVKSLSEDKKHKVAVFTC 252 (568)
T ss_dssp HHHHHHHHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGCEEESSCCBSSCBS--SGGGSCCCCSSCEEEEECS
T ss_pred HHHHHHHHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchheeeccEEEeeccc--CCcEEEecCCcceEEEEcc
Confidence 3566655 2556677899999999999999999974 7999999 999999999
Q ss_pred cccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 204 NLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 204 ~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+|++++++.++++.++++++++++.+ +|++++++++++|++.|+||||++++|+|+|++||.+ +||++++|++
T Consensus 253 ~Le~~k~e~~~~v~i~~~~~l~~~~~----~E~~~l~~~v~~I~~~g~~vvi~~~~I~~~al~~L~~-~gI~av~~v~ 325 (568)
T 3p9d_H 253 PLDIANTETKGTVLLHNAQEMLDFSK----GEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNR-YGILVLKVPS 325 (568)
T ss_dssp CSSSCCCSSSCEEECCSHHHHHHHHH----HHHHHHHHHHHHHHHTTCCEEEECSCCCHHHHHHHHH-HTCEEECCCC
T ss_pred CccccccccCceEEeCCHHHHHHHHH----HHHHHHHHHHHHHHhcCCeEEEECCCcChHHHHHHHH-CCeEEEecCC
Confidence 99999999999999999999999999 9999999999999999999999999999999999998 8999999986
No 21
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*
Probab=100.00 E-value=8.7e-60 Score=459.58 Aligned_cols=265 Identities=33% Similarity=0.505 Sum_probs=244.3
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeec-CCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhH
Q 042442 10 TRGEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFD-DIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDRE 88 (283)
Q Consensus 10 ~~~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~-~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~ 88 (283)
.+++..+|.+++..|+.||+.+++++|+||||+||+|||++ +.|+++|||||+|||++|+++||+|+|++++|++|+++
T Consensus 8 ~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~G~~~iTnDG~tIlk~i~~~hP~Akll~e~a~~qd~~ 87 (527)
T 3p9d_B 8 DQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDE 87 (527)
T ss_dssp SCEEEEESHHHHHHHHHHHHHHHHHHHSCSSSSCCEEEEECTTTCCEECCCCHHHHHHTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEecCCCCeEEeCCHHHHHHHhccCCHHHHHHHHHHHHhHhh
Confidence 56788999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhhc-CCCcchhhHhhHHH-HHHHHHHhhhcccc--C------ceE----EEe------
Q 042442 89 VGDGTTSVVIVAAEMLKRANDLVRN-KIHPTSIISGYRVG-REAWKRFFSKLCQD--K------HVL----EVG------ 148 (283)
Q Consensus 89 ~GDGttt~vvLa~~LL~~a~~li~~-gi~p~~I~~g~~~a-~~~l~~l~~~la~~--~------~~L----~is------ 148 (283)
+||||||++|||++||++|.+++.+ |+||+.|++||++| +.++++|++ ++++ . +.| .+|
T Consensus 88 ~GDGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~v~~~~~~~~~~l~~vA~tSl~sK~~ 166 (527)
T 3p9d_B 88 VGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTK-AAVDNSHDKTMFREDLIHIAKTTLSSKIL 166 (527)
T ss_dssp TCSCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHH-TCBCCCCCHHHHHHHHHHHHHHHHTTSGG
T ss_pred hCCcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-hCccCCCcchhhHHHHHHHHHhccccCcc
Confidence 9999999999999999999999999 99999999999999 999999998 5876 2 233 122
Q ss_pred -cCCchhhhh---------------hhhhhhccCCCeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccc-
Q 042442 149 -GDNDFFANL---------------GINILKAHVKSAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQ- 211 (283)
Q Consensus 149 -~~~~~~s~l---------------~I~i~k~~Gg~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~- 211 (283)
.++++|+++ .|+|.++.||+++||++++|++|++++.+++ |++++||||++++|+|++++++
T Consensus 167 ~~~~~~i~~li~dAv~~V~~~~~~~~I~V~k~~gg~~~ds~lv~G~~~dk~~~~~~-p~~~~n~kIlll~~~le~~k~~~ 245 (527)
T 3p9d_B 167 SQDKDHFAELATNAILRLKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQ-PKRIENAKILIANTTLDTDKVKI 245 (527)
T ss_dssp GGGHHHHHHHHHHHHHTTCTTCCTTSSCCCBCCCSSSSCCCEESSCCCSCCCSSSC-CSCCSSCEEEEECSCSSCCCCSS
T ss_pred cchHHHHHHHHHHHHHHhcccCCcceEEEEEcCCCCccccEEEEeEEEecccCCCC-CeeeecceEEEeccccccccccc
Confidence 234677777 3567777899999999999999999999987 9999999999999999999999
Q ss_pred cCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 212 LGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 212 ~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+++++.++++++++.+.+ +|+++++.++++|++.|++||+++++|++++++||.+ +||++++|++
T Consensus 246 ~~~~v~i~~~~~l~~~~~----~E~~~l~~~l~~I~~~g~~vvi~~~~I~~~al~~L~~-~~i~av~~~~ 310 (527)
T 3p9d_B 246 FGTKFKVDSTAKLAQLEK----AEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTD-LGINSIEHAD 310 (527)
T ss_dssp CCCBCCCCHHHHHHHHHH----HHHHHHHHHHHHHTTTCCBEEESSCCCTTTHHHHHHH-TCBCCCCCCH
T ss_pred cCceEEEcCHHHHHHHHH----HHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-CCCEEEecCC
Confidence 599999999999999999 9999999999999999999999999999999999998 9999999975
No 22
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=100.00 E-value=1.7e-49 Score=387.41 Aligned_cols=238 Identities=21% Similarity=0.317 Sum_probs=210.5
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccc----hhHHHHHHHHHhhh
Q 042442 12 GEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHP----AAKVLVELAELQDR 87 (283)
Q Consensus 12 ~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~ 87 (283)
++..+|.++|..|+.||+.+++++++||||+||+|||+++.|+++|||||+||+++|+++|| .|+|++++|++|++
T Consensus 3 k~~~~g~~ar~~~~~~~~~la~~vkttLGPkG~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~ 82 (543)
T 1we3_A 3 KILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTND 82 (543)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHcccCChHHhHHHHHHHHHHHhhhe
Confidence 45678999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---CceE----EEecCCchhhhhhh
Q 042442 88 EVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KHVL----EVGGDNDFFANLGI 159 (283)
Q Consensus 88 ~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~~L----~is~~~~~~s~l~I 159 (283)
++||||||++|||++||+++.+++.+|+||+.|++||++| +.+++.|++ ++++ ++.| .+|.++++|+++.+
T Consensus 83 e~GDGTTtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~v~~~~~l~~vA~iS~~~~~i~~li~ 161 (543)
T 1we3_A 83 VAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKA-LAIPVEDRKAIEEVATISANDPEVGKLIA 161 (543)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH-TCBCCCSHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ecCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hcccCCCHHHHHHhhhhhcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999998 5877 3344 34556788999854
Q ss_pred hhhhc----------cCCCeeeE-EEEeceEeccccCCCC-------CcceecCCEEEEecccccccccccCeeEEEcCH
Q 042442 160 NILKA----------HVKSAIDS-YLLNGYALNTGRAAQG-------MPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNP 221 (283)
Q Consensus 160 ~i~k~----------~Gg~~~ds-~li~G~v~~~~~~~~~-------m~~~~~~~kIli~~~~le~~k~~~~~~i~~~s~ 221 (283)
+.+.. .|+++++| ++++|++|++++.+++ |+++++||||++++++|+ ++
T Consensus 162 dAv~~V~~~g~I~Ve~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~Is-------------~~ 228 (543)
T 1we3_A 162 DAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVS-------------NV 228 (543)
T ss_dssp HHHHTTCTTSEEEEEECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEEESSCBC-------------CH
T ss_pred HHHHHhCcCCcEEEecCCccccceEEEcCEEEecCccccccccCcccCceeecCceEEEECCCcC-------------CH
Confidence 43332 56778888 9999999999999886 556799999999999754 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhc-----CCceEEE
Q 042442 222 RELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSD-----FNFSHFV 278 (283)
Q Consensus 222 ~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~-----~~i~~~~ 278 (283)
+++. .+++++++.|++||+++++|+++|++||.+. .++.+++
T Consensus 229 ~~l~---------------~~le~i~~~g~~lvii~~~I~~~Al~~L~~n~irg~~~v~aVk 275 (543)
T 1we3_A 229 RELL---------------PILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVK 275 (543)
T ss_dssp HHHH---------------HHHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHHTSCCEEEEE
T ss_pred HHHH---------------HHHHHHHhcCCCEEEEcCCccHHHHHHHHHhccccceeEEEEe
Confidence 4433 4677899999999999999999999999973 5677777
No 23
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=100.00 E-value=2.8e-51 Score=397.20 Aligned_cols=229 Identities=34% Similarity=0.517 Sum_probs=146.4
Q ss_pred EeecCCCCeEEccCHHHHHhhcccccchhHHHHHHHHHhhhHcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHH
Q 042442 47 CLFDDIGDVKITNDGATILKMLEIEHPAAKVLVELAELQDREVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRV 126 (283)
Q Consensus 47 ~i~~~~g~~~iTndg~tIl~~l~~~hP~~~ll~~~~~~~~~~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~ 126 (283)
||+++.|+++|||||+|||++|+++||+|++++++|++|++++||||||+++||++||+++.+++++|+||+.|++||++
T Consensus 1 mlv~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~ 80 (500)
T 3aq1_B 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRH 80 (500)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CccCCCCCeEEECcHHHHHHhCcCCCHHHHHHHHHHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHhhhcccc-----CceE-----------EEecCCchhhhh----------------------hhhhhhccCC
Q 042442 127 G-REAWKRFFSKLCQD-----KHVL-----------EVGGDNDFFANL----------------------GINILKAHVK 167 (283)
Q Consensus 127 a-~~~l~~l~~~la~~-----~~~L-----------~is~~~~~~s~l----------------------~I~i~k~~Gg 167 (283)
| +.+++.|++ ++++ ++.| +.+.++++|+++ +|+|.|+.|+
T Consensus 81 A~~~a~~~L~~-~s~~v~~~d~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G~ 159 (500)
T 3aq1_B 81 AAEKCREILET-ITIAISPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGG 159 (500)
T ss_dssp HHHHHHHHHHH-HCEECCTTCHHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEEESS
T ss_pred HHHHHHHHHHH-hcCCCCCCcHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEecCC
Confidence 9 999999998 4765 2333 112245666666 1566677899
Q ss_pred CeeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042442 168 SAIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLL 247 (283)
Q Consensus 168 ~~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~ 247 (283)
+++||++++|++|++++.|++||++++||||++++|+|++++++.++++.++++++++.+.+ +|+++++.++++|+
T Consensus 160 ~~~ds~lv~G~v~dk~~~~~~m~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~----~E~~~l~~~le~I~ 235 (500)
T 3aq1_B 160 SIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLD----QEEKMMREMAEKVI 235 (500)
T ss_dssp CGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBCC-----------------------------CHHHHHHHHHH
T ss_pred CccceEEEeeeEEeecCCCCCCcccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HCCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 248 KAGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 248 ~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+.|+|||+++++|+++|++||.+ +||++++|+.
T Consensus 236 ~~g~~lvi~~~~I~~~al~~L~~-~~I~av~~~~ 268 (500)
T 3aq1_B 236 ASGANVVFCQKGIDDMAQYYIEK-AGIYAVRRVK 268 (500)
T ss_dssp TTCCSEEEESSCBCHHHHHHHHH-TTCEEECSCC
T ss_pred HhCcCEEEECCCcCHHHHHHHHH-CCEEEEEeCC
Confidence 99999999999999999999998 9999999985
No 24
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=100.00 E-value=1.2e-49 Score=388.28 Aligned_cols=238 Identities=19% Similarity=0.322 Sum_probs=209.6
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccc----hhHHHHHHHHHhhh
Q 042442 12 GEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHP----AAKVLVELAELQDR 87 (283)
Q Consensus 12 ~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~ 87 (283)
++..+|.++|..|+.||+.|++++++||||+||+|||+++.|+++|||||+||+++|+++|| .|++++++|++|++
T Consensus 3 k~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~ 82 (547)
T 1kp8_A 3 KDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKAND 82 (547)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHhhcc
Confidence 45678999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---CceE----EEec-CCchhhhhh
Q 042442 88 EVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KHVL----EVGG-DNDFFANLG 158 (283)
Q Consensus 88 ~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~~L----~is~-~~~~~s~l~ 158 (283)
++||||||++|||++||+++.+++.+|+||+.|++||++| +.+++.|++ ++++ ++.| .+|. ++++|+++.
T Consensus 83 e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~v~~~e~l~~vA~iS~~~~~~i~~li 161 (547)
T 1kp8_A 83 AAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKA-LSVPCSDSKAIAQVGTISANSDETVGKLI 161 (547)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH-HCBCCCSHHHHHHHHHHHTTSCHHHHHHH
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hCcCCCCHHHHHHHHHHhccchhHHHHHH
Confidence 9999999999999999999999999999999999999999 999999998 5877 3444 3444 478899984
Q ss_pred hhhhh----------ccCCCeeeE-EEEeceEeccccCCCC-------CcceecCCEEEEecccccccccccCeeEEEcC
Q 042442 159 INILK----------AHVKSAIDS-YLLNGYALNTGRAAQG-------MPLRVAPPRIACLDFNLQKTKIQLGVQVLVTN 220 (283)
Q Consensus 159 I~i~k----------~~Gg~~~ds-~li~G~v~~~~~~~~~-------m~~~~~~~kIli~~~~le~~k~~~~~~i~~~s 220 (283)
++.+. ..|+++++| ++++|++|++++.|++ |+++++||||++++++|+ +
T Consensus 162 adAv~~V~~dg~I~Ve~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is-------------~ 228 (547)
T 1kp8_A 162 AEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKIS-------------N 228 (547)
T ss_dssp HHHHHHHCTTSEEEEECCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEEC-------------C
T ss_pred HHHHHHhCcCCcEEEEeCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcCC-------------C
Confidence 43322 167888888 9999999999999987 456799999999999754 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhc-----CCceEEE
Q 042442 221 PRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSD-----FNFSHFV 278 (283)
Q Consensus 221 ~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~-----~~i~~~~ 278 (283)
++++. .+++++++.|++||+++++|+++|++||.+. .++.+++
T Consensus 229 ~~~l~---------------~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk 276 (547)
T 1kp8_A 229 IREML---------------PVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVK 276 (547)
T ss_dssp GGGTH---------------HHHHHHHGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEE
T ss_pred HHHHH---------------HHHHHHHhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEe
Confidence 55543 3577899999999999999999999999973 4567776
No 25
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=100.00 E-value=7.9e-50 Score=389.67 Aligned_cols=238 Identities=17% Similarity=0.300 Sum_probs=191.6
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccc----hhHHHHHHHHHhhh
Q 042442 12 GEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHP----AAKVLVELAELQDR 87 (283)
Q Consensus 12 ~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP----~~~ll~~~~~~~~~ 87 (283)
++..+|.+++..|+.||+.+++++++||||+||+|||+++.|+++|||||+|||++|+++|| .|++++++|++|++
T Consensus 4 k~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~ 83 (545)
T 1iok_A 4 KEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTND 83 (545)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHGGG
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECCCCCeEEeCCHHHHHHHhccCChhhHHHHHHHHHHHHhhcc
Confidence 45678999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---CceE----EEec-CCchhhhhh
Q 042442 88 EVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KHVL----EVGG-DNDFFANLG 158 (283)
Q Consensus 88 ~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~~L----~is~-~~~~~s~l~ 158 (283)
++||||||++|||++||+++.+++.+|+||+.|++||++| +.+++.|++ ++++ ++.| .+|. ++++|+++.
T Consensus 84 e~GDGTTtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~-~s~~v~~~e~l~~va~iS~~~~~~i~~li 162 (545)
T 1iok_A 84 EAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKS-AARPVNDSSEVAQVGTISANGESFIGQQI 162 (545)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-TCBCCCSTTTTTHHHHHTTTTCHHHHHHH
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hcccCCCHHHHHHHHHhhcCCchhHHHHH
Confidence 9999999999999999999999999999999999999999 999999998 5877 4455 3444 477899984
Q ss_pred hhhhh----------ccCCCeeeE-EEEeceEeccccCCCC-------CcceecCCEEEEecccccccccccCeeEEEcC
Q 042442 159 INILK----------AHVKSAIDS-YLLNGYALNTGRAAQG-------MPLRVAPPRIACLDFNLQKTKIQLGVQVLVTN 220 (283)
Q Consensus 159 I~i~k----------~~Gg~~~ds-~li~G~v~~~~~~~~~-------m~~~~~~~kIli~~~~le~~k~~~~~~i~~~s 220 (283)
++.+. ..|+++++| ++++|++|++++.+++ |+++++||||++++++|+ +
T Consensus 163 ~dAv~~V~~~g~I~Ve~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I~-------------~ 229 (545)
T 1iok_A 163 AEAMQRVGNEGVITVEENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLS-------------S 229 (545)
T ss_dssp HHHHHHHCTTSCCCCEECSSSCCEEEEECCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBC-------------C
T ss_pred HHHHHHhccCCeEEEEeCCccccceEEEecEEEecCccccccccCcccCceeecCCeEEEEcCCcC-------------C
Confidence 43322 167888888 9999999999999886 566799999999999865 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhc-----CCceEEE
Q 042442 221 PRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSD-----FNFSHFV 278 (283)
Q Consensus 221 ~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~-----~~i~~~~ 278 (283)
++++. .+++++++.|++||+++++|+++|++||.+. .++.+++
T Consensus 230 ~~~l~---------------~~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk 277 (545)
T 1iok_A 230 LQPMV---------------PLLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVK 277 (545)
T ss_dssp CCC--------------------------CCCCEEEESCBC-----------------CEEEE
T ss_pred HHHHH---------------HHHHHHHhcCCCEEEECCCcCHHHHHHHHHccccccceeEEEe
Confidence 33332 3577889999999999999999999999972 3456666
No 26
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=100.00 E-value=6.3e-50 Score=389.67 Aligned_cols=240 Identities=20% Similarity=0.295 Sum_probs=144.2
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCceEeecCCCCeEEccCHHHHHhhcccccch----hHHHHHHHHHhhh
Q 042442 12 GEHQSGQDVRTQNVVARRAVANIVKSSLGPVGLDICLFDDIGDVKITNDGATILKMLEIEHPA----AKVLVELAELQDR 87 (283)
Q Consensus 12 ~~~~~g~~~~~~n~~~~~~l~~~i~~slGP~G~~k~i~~~~g~~~iTndg~tIl~~l~~~hP~----~~ll~~~~~~~~~ 87 (283)
++..+|.++|..|+.||+.+++++|+||||+||+|||+++.|+++|||||+|||++|+++||+ |||++++|++|++
T Consensus 3 k~~~~~~~ar~~~~~~~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hp~~n~gAkll~e~a~~qd~ 82 (546)
T 3rtk_A 3 KTIAYDEEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDD 82 (546)
T ss_dssp ----------------------------------------------------------CCCHHHHHHHHHHHHHHTSCC-
T ss_pred ceeeccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECcHHHHHHHccCCChhhhHHHHHHHHHHHhhhh
Confidence 456789999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred HcCCCchhHHHHHHHHHHHHHHhhhcCCCcchhhHhhHHH-HHHHHHHhhhcccc---CceE----EEecCCchhhhhhh
Q 042442 88 EVGDGTTSVVIVAAEMLKRANDLVRNKIHPTSIISGYRVG-REAWKRFFSKLCQD---KHVL----EVGGDNDFFANLGI 159 (283)
Q Consensus 88 ~~GDGttt~vvLa~~LL~~a~~li~~gi~p~~I~~g~~~a-~~~l~~l~~~la~~---~~~L----~is~~~~~~s~l~I 159 (283)
++||||||++|||++||+++.+++.+|+||+.|++||++| +.++++|++ ++++ ++.| .+|.++++++++.+
T Consensus 83 e~GDGTTtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~-~s~~v~~~e~L~~vA~iS~~~~~i~~lia 161 (546)
T 3rtk_A 83 VAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLK-GAKEVETKEQIAATAAISAGDQSIGDLIA 161 (546)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH-TCBCCCSHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-hcccCCChHHHHhHeEEeCCchHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999998 5877 3344 34555788888844
Q ss_pred hhhhcc-----------CCCeeeEEEEeceEeccccCCCC-------CcceecCCEEEEecccccccccccCeeEEEcCH
Q 042442 160 NILKAH-----------VKSAIDSYLLNGYALNTGRAAQG-------MPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNP 221 (283)
Q Consensus 160 ~i~k~~-----------Gg~~~ds~li~G~v~~~~~~~~~-------m~~~~~~~kIli~~~~le~~k~~~~~~i~~~s~ 221 (283)
+.+... ++...||++++|++|++++.||+ |+++++||||++++++++ ++
T Consensus 162 dAv~~V~~dgvI~Ve~~~~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~kIs-------------~~ 228 (546)
T 3rtk_A 162 EAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVS-------------TV 228 (546)
T ss_dssp HHHHHSCTTSEEEEECCSSSSCEEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSEEC-------------CS
T ss_pred HHHHHhccCCceEEEecCCcccceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCccC-------------CH
Confidence 433222 23347999999999999999885 578899999999999643 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHHHHHHhc-----CCceEEEee
Q 042442 222 RELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQKASLSD-----FNFSHFVWL 280 (283)
Q Consensus 222 ~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~-----~~i~~~~~~ 280 (283)
+++. .+++++.+.|++||+++++|+++|++||... .++.++++-
T Consensus 229 ~~l~---------------~~le~I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~~ 277 (546)
T 3rtk_A 229 KDLL---------------PLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAP 277 (546)
T ss_dssp TTTH---------------HHHHHHHTTTCCEEEEESEECHHHHHHHHHHHHHSSCCEEEEECS
T ss_pred HHHH---------------HHHHHHHhcCCCEEEEcCCCCHHHHHHHHHhCCCCceEEEEeccc
Confidence 5543 2578899999999999999999999999962 135666543
No 27
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=99.92 E-value=1.6e-25 Score=189.16 Aligned_cols=108 Identities=26% Similarity=0.358 Sum_probs=90.3
Q ss_pred eeeEEEEeceEeccccCCCCCcceecCCEEEEecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042442 169 AIDSYLLNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLK 248 (283)
Q Consensus 169 ~~ds~li~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~ 248 (283)
++||++++|++|++++.++.||++++||||++++|||++++++.++++.++++++++++.+ +|++++++++++|++
T Consensus 1 ~~dS~lv~Gvvl~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~----~E~~~l~~~v~kI~~ 76 (178)
T 1gml_A 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQ----MEEEYIHQLCEDIIQ 76 (178)
T ss_dssp --CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHH----HHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEEEEeccccCCCCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 3689999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCcEEEEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 249 AGANVVLTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 249 ~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+|+|||+|+++|+|+|++||++ +||++++||.
T Consensus 77 ~g~nVVl~~k~I~d~a~~~l~k-~gI~~vr~v~ 108 (178)
T 1gml_A 77 LKPDVVITEKGISDLAQHYLMR-ANVTAIRRVR 108 (178)
T ss_dssp TCCSEEEESSCBCHHHHHHHHH-TTCEEECCCC
T ss_pred cCCcEEEECCcccHHHHHHHHH-CCCEEEecCC
Confidence 9999999999999999999998 9999999986
No 28
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=99.90 E-value=2.2e-24 Score=178.85 Aligned_cols=102 Identities=28% Similarity=0.437 Sum_probs=99.6
Q ss_pred EeceEeccccCCCCCcceecCCEEEEecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEE
Q 042442 175 LNGYALNTGRAAQGMPLRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVV 254 (283)
Q Consensus 175 i~G~v~~~~~~~~~m~~~~~~~kIli~~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv 254 (283)
++|++|++++.++.||++++||||++++|||++++++.++++.++++++++++.+ +|+++++++|++|+++|+|||
T Consensus 1 i~Gvv~~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~----~E~~~l~~~v~kI~~~g~nVV 76 (159)
T 1ass_A 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLN----QETNTFKQMVEKIKKSGANVV 76 (159)
T ss_dssp CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHH----HHHHHHHHHHHHHHHTTCSEE
T ss_pred CceEEEecccCCCCCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHH----HHHHHHHHHhhhhhhCCCeEE
Confidence 5899999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHhcCCceEEEeec
Q 042442 255 LTTKGIDDMAQKASLSDFNFSHFVWLC 281 (283)
Q Consensus 255 ~~~~~I~d~al~~l~~~~~i~~~~~~~ 281 (283)
+|+++|+|+|++||++ +||+++|||.
T Consensus 77 l~~k~I~d~a~~~l~k-~gI~~v~~v~ 102 (159)
T 1ass_A 77 LCQKGIDDVAQHYLAK-EGIYAVRRVK 102 (159)
T ss_dssp EESSCBCHHHHHHHHH-TTCEEECSCC
T ss_pred EECCccCHHHHHHHHH-CCCEEEccCC
Confidence 9999999999999998 9999999986
No 29
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=97.65 E-value=3.5e-05 Score=64.50 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=56.8
Q ss_pred EEEEeceEeccccCCCCCc-------ceecCCEEEEecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 042442 172 SYLLNGYALNTGRAAQGMP-------LRVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIE 244 (283)
Q Consensus 172 s~li~G~v~~~~~~~~~m~-------~~~~~~kIli~~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~ 244 (283)
.++++||.||++|.+|||. ..++||+|++++.+++ +.+++.++. +
T Consensus 2 levvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkKIs-------------~i~~ilP~L---------------E 53 (194)
T 3m6c_A 2 LEFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDKIS-------------SLPDLLPLL---------------E 53 (194)
T ss_dssp CCCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSEEC-------------CHHHHHHHH---------------H
T ss_pred eEEEeeeEccCcccCceeeeccCCcEEEEecceEEEEcCccC-------------CHHHHHHHH---------------H
Confidence 4689999999999999875 3588999999998865 567777644 4
Q ss_pred HHHHCCCcEEEEcCCCCHHHHHHHH
Q 042442 245 KLLKAGANVVLTTKGIDDMAQKASL 269 (283)
Q Consensus 245 ~I~~~gv~vv~~~~~I~d~al~~l~ 269 (283)
++.+.|-.+++....|+.+|+..|.
T Consensus 54 ~~~~~~kpLlIIAedvegeaLatLv 78 (194)
T 3m6c_A 54 KVAGTGKPLLIVAEDVEGEALATLV 78 (194)
T ss_dssp HHHHHTCCEEEEESEECHHHHHHHH
T ss_pred HHHHhCCCeEEEecccccchhhhhh
Confidence 5666677788889999999998665
No 30
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=97.38 E-value=0.00026 Score=56.60 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=53.7
Q ss_pred ceEeccccCCCCCcc-------eecCCEEEEecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q 042442 177 GYALNTGRAAQGMPL-------RVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKA 249 (283)
Q Consensus 177 G~v~~~~~~~~~m~~-------~~~~~kIli~~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~ 249 (283)
||.||++|.+|||.+ .++||+|++.+.+++ +.+++.++. +++.+.
T Consensus 1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkKIs-------------~i~~llP~L---------------E~v~~~ 52 (145)
T 1srv_A 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVS-------------NVRELLPIL---------------EQVAQT 52 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEEC-------------CHHHHHHHH---------------HHHHTT
T ss_pred CccccCCccCceeecCccccEEEeeccEEEEeccccc-------------CHHHHHHHH---------------HHHHHH
Confidence 899999999998754 578999999998865 667777644 567788
Q ss_pred CCcEEEEcCCCCHHHHHHHH
Q 042442 250 GANVVLTTKGIDDMAQKASL 269 (283)
Q Consensus 250 gv~vv~~~~~I~d~al~~l~ 269 (283)
|-.+++....|+.+|+..|.
T Consensus 53 ~~pLlIIAedvegeaLatLv 72 (145)
T 1srv_A 53 GKPLLIIAEDVEGEALATLV 72 (145)
T ss_dssp TCCEEEEESEECHHHHHHHH
T ss_pred CCCEEEEecccchhhhhhhh
Confidence 88899999999999998765
No 31
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=97.26 E-value=0.0004 Score=58.29 Aligned_cols=67 Identities=21% Similarity=0.272 Sum_probs=54.9
Q ss_pred EeceEeccccCCCCCcc-------eecCCEEEEecccccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042442 175 LNGYALNTGRAAQGMPL-------RVAPPRIACLDFNLQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLL 247 (283)
Q Consensus 175 i~G~v~~~~~~~~~m~~-------~~~~~kIli~~~~le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~ 247 (283)
-+||.||++|.+|||.+ .++||+|++.+.+|+ +.+++.++. +++.
T Consensus 12 ~~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkKIs-------------~i~~ilP~L---------------E~v~ 63 (201)
T 3osx_A 12 SEGMQFDRGYLSPYFINKPESGSVELENPYILLVDKKIS-------------NIRELLPVL---------------EGVA 63 (201)
T ss_dssp CCCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEEEC-------------CHHHHHHHH---------------HHHH
T ss_pred ccccEecCccCChheeecccCCEEEecCCeEEEEcCccC-------------CHHHHHHHH---------------HHHH
Confidence 46999999999998754 588999999998865 567776644 5677
Q ss_pred HCCCcEEEEcCCCCHHHHHHHH
Q 042442 248 KAGANVVLTTKGIDDMAQKASL 269 (283)
Q Consensus 248 ~~gv~vv~~~~~I~d~al~~l~ 269 (283)
+.|-.+++....|+.+|+..|.
T Consensus 64 ~~~rpLlIIAEDvegEALatLv 85 (201)
T 3osx_A 64 KASKPLVIIAEDVEGEALATLV 85 (201)
T ss_dssp TSSCCEEEEEEEECHHHHHHHH
T ss_pred HhCCCeEEEeccccchhhhHHH
Confidence 8888899999999999998665
No 32
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=70.38 E-value=6.2 Score=29.59 Aligned_cols=37 Identities=27% Similarity=0.192 Sum_probs=31.9
Q ss_pred HHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEe
Q 042442 241 ERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVW 279 (283)
Q Consensus 241 ~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~ 279 (283)
...+.|.+.|+++|+|. +|.+-+.+.|.+ +||.++..
T Consensus 54 ~~~~~L~~~gv~~vi~~-~iG~~a~~~L~~-~GI~v~~~ 90 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTY-GIGRRAIEYFNS-LGISVVTG 90 (121)
T ss_dssp HHHHHHHHTTCCEEECS-BCCHHHHHHHHH-TTCEEECS
T ss_pred HHHHHHHHcCCCEEEEC-CCCHhHHHHHHH-CCCEEEEC
Confidence 35667788999999999 799999999986 99999875
No 33
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=69.76 E-value=6.4 Score=30.47 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=31.8
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEee
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWL 280 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~ 280 (283)
..+.|.+.|+++|+|. +|.+-+...|.+ +||.++...
T Consensus 68 ~a~~L~~~gv~vVI~g-~IG~~a~~~L~~-~GI~v~~~~ 104 (136)
T 1o13_A 68 VPNFVKEKGAELVIVR-GIGRRAIAAFEA-MGVKVIKGA 104 (136)
T ss_dssp HHHHHHHTTCSEEECS-CCCHHHHHHHHH-TTCEEECSC
T ss_pred HHHHHHHCCCCEEEEC-CCCHHHHHHHHH-CCCEEEecC
Confidence 4567888999999998 799999999986 999998753
No 34
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=67.44 E-value=8.5 Score=28.96 Aligned_cols=37 Identities=8% Similarity=0.068 Sum_probs=31.5
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEee
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWL 280 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~ 280 (283)
..+.|.+.|+++|+|. +|.+-+...|.+ +||.++.+.
T Consensus 57 ~~~~l~~~gv~~vi~~-~iG~~a~~~L~~-~GI~v~~~~ 93 (124)
T 1eo1_A 57 TAQIIANNGVKAVIAS-SPGPNAFEVLNE-LGIKIYRAT 93 (124)
T ss_dssp HHHHHHHTTCCEEEEC-CSSHHHHHHHHH-HTCEEEECC
T ss_pred HHHHHHHCCCCEEEEC-CcCHHHHHHHHH-CCCEEEEcC
Confidence 4566788999999999 699999999986 999998753
No 35
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=64.89 E-value=6.7 Score=29.35 Aligned_cols=37 Identities=27% Similarity=0.121 Sum_probs=31.5
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEee
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWL 280 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~ 280 (283)
..+.|.+.|+++|+|. +|.+-+.+.|.+ +||.++...
T Consensus 59 ~~~~l~~~gv~~vi~~-~iG~~a~~~L~~-~GI~v~~~~ 95 (120)
T 2wfb_A 59 AAQVLAKSGAGVLLTG-YVGPKAFQALQA-AGIKVGQDL 95 (120)
T ss_dssp HHHHHHHHTEEEEECS-CCCHHHHHHHHH-TTCEEECCC
T ss_pred HHHHHHHCCCCEEEEC-CCCHhHHHHHHH-CCCEEEEcC
Confidence 4566777999999999 699999999986 999998753
No 36
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=63.17 E-value=13 Score=28.64 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=30.1
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEee
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWL 280 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~ 280 (283)
..+.|.+.|+++|+|. +|.+-+...|. + ||.++...
T Consensus 71 ~~~~L~~~gv~~VI~g-~iG~~a~~~L~-~-GI~v~~~~ 106 (136)
T 2re2_A 71 MLKSALDHGANALVLS-EIGSPGFNFIK-N-KMDVYIVP 106 (136)
T ss_dssp HHHHHHHTTCSEEEES-CCBHHHHHHHT-T-TSEEEECC
T ss_pred HHHHHHHcCCCEEEEC-CCCHhHHHHHH-C-CCEEEEcC
Confidence 4566778899999999 79999999987 4 99998764
No 37
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=51.16 E-value=8.8 Score=28.45 Aligned_cols=36 Identities=8% Similarity=0.226 Sum_probs=30.3
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEe
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVW 279 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~ 279 (283)
..+.|.+.|+++|+|. +|.+-+.+.|.+ +||.++.+
T Consensus 54 ~~~~l~~~gv~~vi~~-~iG~~a~~~L~~-~GI~v~~~ 89 (116)
T 1rdu_A 54 VVQSLVSKGVEYLIAS-NVGRNAFETLKA-AGVKVYRF 89 (116)
T ss_dssp HHHHHHTTTCCEEECS-SCCSSCHHHHHT-TTCEEECC
T ss_pred HHHHHHHcCCCEEEEC-CCCHhHHHHHHH-CCCEEEEC
Confidence 3456778999999998 689999999986 99998875
No 38
>2qtd_A Uncharacterized protein MJ0327; ribonuclease H-like motif fold, iron-molybdenum cofactor, ST genomics; HET: MSE PG4; 1.70A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 2kla_A
Probab=50.22 E-value=29 Score=25.01 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=28.1
Q ss_pred HHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEe
Q 042442 244 EKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVW 279 (283)
Q Consensus 244 ~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~ 279 (283)
+.+.+.|+++|+|. ++.+-+.+.|.+ + |.++..
T Consensus 50 ~~l~~~gv~~vi~~-~iG~~a~~~L~~-~-I~v~~~ 82 (105)
T 2qtd_A 50 KSIVKENVNAIICK-NISEENYKKFSK-K-IEIYHA 82 (105)
T ss_dssp HHHHHTCCSEEEES-CCCHHHHHHHHT-T-CEEEEC
T ss_pred HHHHHCCCCEEEEC-CCCHHHHHHHHh-c-cEEEEC
Confidence 55667899999997 799999999987 6 988874
No 39
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=48.85 E-value=32 Score=29.85 Aligned_cols=37 Identities=5% Similarity=-0.009 Sum_probs=32.6
Q ss_pred HHHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEE
Q 042442 241 ERIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHF 277 (283)
Q Consensus 241 ~~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~ 277 (283)
+.++.+.+.++.+||++..+++...+.++++.|+.++
T Consensus 219 ~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~ 255 (286)
T 3gi1_A 219 EIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVK 255 (286)
T ss_dssp HHHHHHHHTTCCEEEECTTSCTHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCeEE
Confidence 3567899999999999999999988999999998765
No 40
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=48.66 E-value=28 Score=30.08 Aligned_cols=37 Identities=8% Similarity=-0.002 Sum_probs=32.3
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEE
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFV 278 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~ 278 (283)
.++.+.+.++.+||++..+++...+.++++.|+.++.
T Consensus 215 l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~ 251 (284)
T 2prs_A 215 IRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGT 251 (284)
T ss_dssp HHHHHHHTTCCEEEECTTSCSHHHHHHTTTSCCEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEE
Confidence 5568899999999999999998899999989988753
No 41
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=43.00 E-value=29 Score=30.06 Aligned_cols=36 Identities=6% Similarity=-0.037 Sum_probs=31.7
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEE
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHF 277 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~ 277 (283)
.++.+.+.++.+||++..+++...+.++++.|+.++
T Consensus 218 l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~ 253 (284)
T 3cx3_A 218 IQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLK 253 (284)
T ss_dssp HHHHHHHTTCCCEEECSSSCCHHHHHHHSSSSCCEE
T ss_pred HHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCeEE
Confidence 556889999999999999999888999998998765
No 42
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=40.56 E-value=29 Score=30.56 Aligned_cols=36 Identities=6% Similarity=-0.097 Sum_probs=32.0
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEE
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHF 277 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~ 277 (283)
.++.+.+.++.+||++..+++...+.++++.|+.++
T Consensus 231 l~~~ik~~~v~~If~e~~~~~~~~~~ia~e~g~~v~ 266 (312)
T 2o1e_A 231 LKTYAKEHNVKVIYFEEIASSKVADTLASEIGAKTE 266 (312)
T ss_dssp HHHHTTSSCCCEEECSSCCCHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCcEE
Confidence 556888999999999999999999999999998765
No 43
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=39.93 E-value=29 Score=30.20 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=31.9
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEE
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFV 278 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~ 278 (283)
.++.+.+.++.+||++..+++...+.++++.|+.++.
T Consensus 229 l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~ 265 (291)
T 1pq4_A 229 LIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVEL 265 (291)
T ss_dssp HHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEE
Confidence 5568899999999999999998889999888877653
No 44
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=38.02 E-value=44 Score=29.55 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=32.1
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEE
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHF 277 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~ 277 (283)
.++.+.+.++.+||++..+++...+.++++.|+.+.
T Consensus 245 l~~~ik~~~v~~If~e~~~~~~~~~~iA~e~g~~v~ 280 (321)
T 1xvl_A 245 VIEEVKTNNVPTIFCESTVSDKGQKQVAQATGARFG 280 (321)
T ss_dssp HHHHHHTTTCSEEEEETTSCSHHHHHHHTTTCCEEE
T ss_pred HHHHHHHcCCcEEEEeCCCChHHHHHHHHhcCCcee
Confidence 567889999999999999999888999999998875
No 45
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=37.95 E-value=28 Score=30.44 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=32.3
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEE
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHF 277 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~ 277 (283)
.++.+.+.++.+||++..+++...+.++++.|+.++
T Consensus 224 l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~ 259 (294)
T 3hh8_A 224 LIEKLKVIKPSALFVESSVDRRPMETVSKDSGIPIY 259 (294)
T ss_dssp HHHHHHHSCCSCEEEETTSCSHHHHHHHHHHCCCEE
T ss_pred HHHHHHHcCCCEEEEeCCCCcHHHHHHHHHhCCcEE
Confidence 567889999999999999999988999999998876
No 46
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=36.90 E-value=60 Score=28.55 Aligned_cols=36 Identities=6% Similarity=-0.105 Sum_probs=31.5
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHH-----hcCCceEE
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASL-----SDFNFSHF 277 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~-----~~~~i~~~ 277 (283)
.++.+.+.++.+||++..+++...+.+. ++.|+...
T Consensus 238 l~~~ik~~~v~~If~e~~~~~~~~~~la~~~~A~e~gv~v~ 278 (313)
T 1toa_A 238 LAAFIAQRKLPAIFIESSIPHKNVEALRDAVQARGHVVQIG 278 (313)
T ss_dssp HHHHHHHTTCSEEEEETTSCTHHHHHHHHHHHTTTCCCEEE
T ss_pred HHHHHHHcCCCEEEEeCCCChHHHHHHHccchhhhcCCcee
Confidence 5678899999999999999999889998 88998764
No 47
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=30.39 E-value=50 Score=29.01 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=31.9
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEE
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHF 277 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~ 277 (283)
.++.+.+.++.+||++..+++...+.++++.|+...
T Consensus 231 l~~~ik~~~v~~If~e~~~~~k~~~~ia~e~g~~v~ 266 (307)
T 3ujp_A 231 VIEEVKTNNVPTIFCESTVSDKGQKQVAQATGARFG 266 (307)
T ss_dssp HHHHHHTTTCSEEEEETTSCSHHHHHTTTTTCCEEE
T ss_pred HHHHHHhcCCcEEEEeCCCChHHHHHHHHHhCCcee
Confidence 567889999999999999999999999999998753
No 48
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=28.70 E-value=63 Score=25.01 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=25.4
Q ss_pred CCCcEEEEcCCCCHHHHHHHHhcCCceEEEe
Q 042442 249 AGANVVLTTKGIDDMAQKASLSDFNFSHFVW 279 (283)
Q Consensus 249 ~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~ 279 (283)
.||++|+|. +|.+-+...|.+ +||.++.-
T Consensus 66 ~g~~vvi~~-~iG~~a~~~L~~-~GI~v~~~ 94 (145)
T 1p90_A 66 QDCQVLYVV-SIGGPAAAKVVR-AGIHPLKK 94 (145)
T ss_dssp TTCSEEEES-BCCHHHHHHHHH-TTCEEEEC
T ss_pred CCCCEEEEC-CCCHHHHHHHHH-cCCEEEEe
Confidence 489999998 799999999986 99998863
No 49
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=28.57 E-value=54 Score=24.66 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=23.8
Q ss_pred HHHHHHHCCCcEEEEcCCCC-HHHHHHHHhcCCceEEE
Q 042442 242 RIEKLLKAGANVVLTTKGID-DMAQKASLSDFNFSHFV 278 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~-d~al~~l~~~~~i~~~~ 278 (283)
.++.+.+.|+..|+.+.|+. +.+.+.. +++||-++.
T Consensus 74 ~v~e~~~~g~k~v~~~~G~~~~e~~~~a-~~~Girvv~ 110 (122)
T 3ff4_A 74 EYNYILSLKPKRVIFNPGTENEELEEIL-SENGIEPVI 110 (122)
T ss_dssp GHHHHHHHCCSEEEECTTCCCHHHHHHH-HHTTCEEEE
T ss_pred HHHHHHhcCCCEEEECCCCChHHHHHHH-HHcCCeEEC
Confidence 44556667888777777764 5555555 569998774
No 50
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=25.27 E-value=85 Score=27.05 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=26.4
Q ss_pred HHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEE
Q 042442 243 IEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFV 278 (283)
Q Consensus 243 v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~ 278 (283)
+++|.+.++|+||.....++...+-|.+ .||+++.
T Consensus 77 ~E~i~~l~PDlIi~~~~~~~~~~~~L~~-~Gipvv~ 111 (326)
T 3psh_A 77 IESLLALKPDVVFVTNYAPSEMIKQISD-VNIPVVA 111 (326)
T ss_dssp HHHHHHTCCSEEEEETTCCHHHHHHHHT-TTCCEEE
T ss_pred HHHHHccCCCEEEEeCCCChHHHHHHHH-cCCCEEE
Confidence 4678888999999876556666777875 8888764
No 51
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=23.82 E-value=1.6e+02 Score=23.39 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=33.3
Q ss_pred cceecCCEEEEeccc----ccccccccCeeEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEcCCCCHHHH
Q 042442 190 PLRVAPPRIACLDFN----LQKTKIQLGVQVLVTNPRELEKICQRFLHREADMVKERIEKLLKAGANVVLTTKGIDDMAQ 265 (283)
Q Consensus 190 ~~~~~~~kIli~~~~----le~~k~~~~~~i~~~s~~~l~~~~~~~~~~E~~~i~~~v~~I~~~gv~vv~~~~~I~d~al 265 (283)
|+.+++.+|+++|.| |....++.=++ .|.++++...+ +.-.+.|+.|-+.|.+-.....
T Consensus 1 ~~~~~~m~IlvlNGPNLNlLG~REP~iYG~---~Tl~di~~~l~--------------~~a~~~g~~v~~~QSN~EGeLI 63 (156)
T 1gtz_A 1 PRSLANAPIMILNGPNLNLLGQAQPEIYGS---DTLADVEALCV--------------KAAAAHGGTVDFRQSNHEGELV 63 (156)
T ss_dssp -CCTTTSCEEEEECTTGGGTTTSCHHHHCS---CCHHHHHHHHH--------------HHHHTTTCCEEEEECSCHHHHH
T ss_pred CCCccCceEEEEeCCCccccCCCCCCcCCC---CCHHHHHHHHH--------------HHHHHcCCEEEEEeeCCHHHHH
Confidence 345677789999987 33333332111 23444444332 3345556666666665555555
Q ss_pred HHHH
Q 042442 266 KASL 269 (283)
Q Consensus 266 ~~l~ 269 (283)
+.+.
T Consensus 64 d~Ih 67 (156)
T 1gtz_A 64 DWIH 67 (156)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 52
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=22.85 E-value=1.1e+02 Score=25.22 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=24.1
Q ss_pred HHHHHHCCCcEEEEcCC-CCHHHHHHHHhcCCceEE
Q 042442 243 IEKLLKAGANVVLTTKG-IDDMAQKASLSDFNFSHF 277 (283)
Q Consensus 243 v~~I~~~gv~vv~~~~~-I~d~al~~l~~~~~i~~~ 277 (283)
+++|.+.++|+||.... .+....+-|.+ .||+++
T Consensus 52 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~-~gipvv 86 (256)
T 2r7a_A 52 SEGILSLRPDSVITWQDAGPQIVLDQLRA-QKVNVV 86 (256)
T ss_dssp HHHHHTTCCSEEEEETTCSCHHHHHHHHH-TTCEEE
T ss_pred HHHHHccCCCEEEEcCCCCCHHHHHHHHH-cCCcEE
Confidence 46788889999888654 45556667765 888765
No 53
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=22.20 E-value=81 Score=27.14 Aligned_cols=36 Identities=6% Similarity=0.001 Sum_probs=27.9
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHH---HhcCCceEE
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKAS---LSDFNFSHF 277 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l---~~~~~i~~~ 277 (283)
.++.+.+.++.+||++..+++...+.+ +++.|+.+.
T Consensus 204 l~~~ik~~~v~~if~e~~~~~~~~~~l~~~a~~~g~~v~ 242 (282)
T 3mfq_A 204 TVNLIIDHNIKAIFTESTTNPERMKKLQEAVKAKGGQVE 242 (282)
T ss_dssp HHHHHHHHTCCEEECBTTSCTHHHHHHHHHHHTTSCCCE
T ss_pred HHHHHHHcCCCEEEEeCCCChHHHHHHHHHHHhcCCceE
Confidence 556788899999999999988766665 456786654
No 54
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=22.12 E-value=1.1e+02 Score=25.04 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=24.6
Q ss_pred HHHHHHCCCcEEEEcCCCC-HHHHHHHHhcCCceEEE
Q 042442 243 IEKLLKAGANVVLTTKGID-DMAQKASLSDFNFSHFV 278 (283)
Q Consensus 243 v~~I~~~gv~vv~~~~~I~-d~al~~l~~~~~i~~~~ 278 (283)
+++|.+.++|+|+...... +...+-|.+ .||+++.
T Consensus 52 ~E~i~~l~PDlIi~~~~~~~~~~~~~L~~-~gipvv~ 87 (255)
T 3md9_A 52 AEGILAMKPTMLLVSELAQPSLVLTQIAS-SGVNVVT 87 (255)
T ss_dssp HHHHHTTCCSEEEEETTCSCHHHHHHHHH-TTCEEEE
T ss_pred HHHHHccCCCEEEEcCCcCchhHHHHHHH-cCCcEEE
Confidence 4678888999988876653 445566765 7877763
No 55
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=21.37 E-value=1e+02 Score=25.29 Aligned_cols=34 Identities=12% Similarity=0.261 Sum_probs=23.7
Q ss_pred HHHHHHCCCcEEEEcC-CCCHHHHHHHHhcCCceEE
Q 042442 243 IEKLLKAGANVVLTTK-GIDDMAQKASLSDFNFSHF 277 (283)
Q Consensus 243 v~~I~~~gv~vv~~~~-~I~d~al~~l~~~~~i~~~ 277 (283)
+++|.+.++|+|+... +.++...+-|.+ .||+++
T Consensus 50 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~-~gipvv 84 (245)
T 1n2z_A 50 LERIVALKPDLVIAWRGGNAERQVDQLAS-LGIKVM 84 (245)
T ss_dssp HHHHHHTCCSEEEECTTTSCHHHHHHHHH-HTCCEE
T ss_pred HHHHhccCCCEEEEeCCCCcHHHHHHHHH-CCCcEE
Confidence 3677888889888853 456666677765 777765
No 56
>2pw9_A Putative formate dehydrogenase accessory protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Desulfotalea psychrophila LSV54} SCOP: c.97.1.5
Probab=20.63 E-value=1.2e+02 Score=26.06 Aligned_cols=38 Identities=5% Similarity=0.099 Sum_probs=33.1
Q ss_pred HHHHHHHCCCcEEEEcCCCCHHHHHHHHhcCCceEEEee
Q 042442 242 RIEKLLKAGANVVLTTKGIDDMAQKASLSDFNFSHFVWL 280 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~d~al~~l~~~~~i~~~~~~ 280 (283)
+|+|.+..|+.++++...-...|.+.-. +.||+.+..+
T Consensus 207 mV~Kaa~aGIpvlvS~SApTslAV~lA~-~~giTLiGf~ 244 (268)
T 2pw9_A 207 MVLKCARIGIPIIMSRTSPSSLGLALAK-RSGATLVAYS 244 (268)
T ss_dssp HHHHHHHHTCCEEEESSCBCHHHHHHHH-HHTCEEEEEE
T ss_pred HHHHHHHcCCCEEEEcccccHHHHHHHH-HcCCEEEEEe
Confidence 6889999999999999999999987655 5999998754
No 57
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=20.30 E-value=1.6e+02 Score=22.27 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=23.6
Q ss_pred HHHHHHHCCCcEEEEcCCCC-HHHHHHHHhcCCceEEE
Q 042442 242 RIEKLLKAGANVVLTTKGID-DMAQKASLSDFNFSHFV 278 (283)
Q Consensus 242 ~v~~I~~~gv~vv~~~~~I~-d~al~~l~~~~~i~~~~ 278 (283)
.++.+.+.|+..++++.+.. +.+.+.. +++|+.++.
T Consensus 93 vv~~~~~~gi~~i~~~~g~~~~~l~~~a-~~~Gi~vvG 129 (144)
T 2d59_A 93 YVEQAIKKGAKVVWFQYNTYNREASKKA-DEAGLIIVA 129 (144)
T ss_dssp HHHHHHHHTCSEEEECTTCCCHHHHHHH-HHTTCEEEE
T ss_pred HHHHHHHcCCCEEEECCCchHHHHHHHH-HHcCCEEEc
Confidence 45667777888777766665 4444444 559988764
Done!