BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042443
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG
PE=1 SV=2
Length = 931
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 29 LSNSNSHALLGRLLKG-QRQYPIRSFAVASNAKSEKIQLPKKKRRLDEICLERF 81
L+N +++ L+G + RQ P ++AS A E++++P ++ LDE ++RF
Sbjct: 191 LANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVKMPTQRESLDEAAMKRF 244
>sp|Q9CKA6|RLUD_PASMU Ribosomal large subunit pseudouridine synthase D OS=Pasteurella
multocida (strain Pm70) GN=rluD PE=3 SV=1
Length = 324
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 61 SEKIQLPKKKRRLDEICLERFQQYSRTYIQSWILQ 95
S +IQL + +RLD+ E F YSR+ +++WI Q
Sbjct: 7 SAEIQLSQLGQRLDQALAELFPDYSRSRLKTWIEQ 41
>sp|A8XEN7|DCA11_CAEBR DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis
briggsae GN=wdr-23 PE=3 SV=2
Length = 554
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 15/86 (17%)
Query: 6 LKLPINLRCYNNPTSTANSGLFLLSNSNSHALLGRLLKGQRQYPIRSFAVASNAKSEKIQ 65
L+ IN RC P++++N+ + +L R ++ +R P+ + AS A
Sbjct: 82 LRTDINHRCGPRPSTSSNA---------TWNILNRDVQ-RRNGPVMT--SASRAHLLNTH 129
Query: 66 LPKKKRRLDEICLERFQQYSRTYIQS 91
LP KKRR+D++ R + + YIQ+
Sbjct: 130 LPNKKRRVDQL---RTKNFCAQYIQN 152
>sp|P44445|RLUD_HAEIN Ribosomal large subunit pseudouridine synthase D OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rluD PE=3 SV=1
Length = 324
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 61 SEKIQLPKKKRRLDEICLERFQQYSRTYIQSWI 93
S ++Q + +RLD+ E F +YSR+ +++WI
Sbjct: 7 SAEVQPEQMGQRLDQTLAELFPEYSRSRLKTWI 39
>sp|P65835|RLUD_SHIFL Ribosomal large subunit pseudouridine synthase D OS=Shigella
flexneri GN=rluD PE=3 SV=2
Length = 326
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 71 RRLDEICLERFQQYSRTYIQSWIL 94
+RLD+ E F YSR+ I+ WIL
Sbjct: 18 QRLDQALAEMFPDYSRSRIKEWIL 41
>sp|P65836|RLUD_SALTY Ribosomal large subunit pseudouridine synthase D OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rluD PE=1 SV=2
Length = 326
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 71 RRLDEICLERFQQYSRTYIQSWIL 94
+RLD+ E F YSR+ I+ WIL
Sbjct: 18 QRLDQALAEMFPDYSRSRIKEWIL 41
>sp|P65837|RLUD_SALTI Ribosomal large subunit pseudouridine synthase D OS=Salmonella
typhi GN=rluD PE=3 SV=2
Length = 326
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 71 RRLDEICLERFQQYSRTYIQSWIL 94
+RLD+ E F YSR+ I+ WIL
Sbjct: 18 QRLDQALAEMFPDYSRSRIKEWIL 41
>sp|P33643|RLUD_ECOLI Ribosomal large subunit pseudouridine synthase D OS=Escherichia
coli (strain K12) GN=rluD PE=1 SV=4
Length = 326
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 71 RRLDEICLERFQQYSRTYIQSWIL 94
+RLD+ E F YSR+ I+ WIL
Sbjct: 18 QRLDQALAEMFPDYSRSRIKEWIL 41
>sp|P65834|RLUD_ECOL6 Ribosomal large subunit pseudouridine synthase D OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluD
PE=3 SV=2
Length = 326
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 71 RRLDEICLERFQQYSRTYIQSWIL 94
+RLD+ E F YSR+ I+ WIL
Sbjct: 18 QRLDQALAEMFPDYSRSRIKEWIL 41
>sp|Q8X9F0|RLUD_ECO57 Ribosomal large subunit pseudouridine synthase D OS=Escherichia
coli O157:H7 GN=rluD PE=3 SV=3
Length = 326
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 71 RRLDEICLERFQQYSRTYIQSWIL 94
+RLD+ E F YSR+ I+ WIL
Sbjct: 18 QRLDQALAEMFPDYSRSRIKEWIL 41
>sp|Q8K9E9|RLUD_BUCAP Ribosomal large subunit pseudouridine synthase D OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=rluD PE=3 SV=1
Length = 315
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 71 RRLDEICLERFQQYSRTYIQSWIL 94
+RLD+I + F QYSR+ ++ WI+
Sbjct: 18 KRLDQILSKLFMQYSRSCLKKWII 41
>sp|A7TM79|ATG2_VANPO Autophagy-related protein 2 OS=Vanderwaltozyma polyspora (strain
ATCC 22028 / DSM 70294) GN=ATG2 PE=3 SV=1
Length = 1566
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 23 NSGLFLLSNSNSHALLGRLLKGQRQYPIRSFAVASNAKSEKIQLPKKKRR-----LDEIC 77
NS +++LS + S + RLLK +R+YPI S + SN++ + KK R + +C
Sbjct: 689 NSEVYMLSKTLS---IDRLLK-ERRYPILSCLLNSNSQEPTLIFEKKVRNKLKIYIKNVC 744
Query: 78 LERFQQ 83
L + +
Sbjct: 745 LHYYAR 750
>sp|Q0C0W2|SYS_HYPNA Serine--tRNA ligase OS=Hyphomonas neptunium (strain ATCC 15444)
GN=serS PE=3 SV=1
Length = 432
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 28 LLSNSNSHALLGRLLKGQRQYPIRSFAVASNAKSEK-IQLPKKKRRLD 74
L+++ HA LG LKGQ +P+ F A+ + + L K RL+
Sbjct: 135 LINDPKDHADLGEALKGQGGFPMMDFEAAARMSGARFVALRGKLTRLE 182
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,560,676
Number of Sequences: 539616
Number of extensions: 1011104
Number of successful extensions: 2541
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2531
Number of HSP's gapped (non-prelim): 13
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)